Citrus Sinensis ID: 001248
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1114 | 2.2.26 [Sep-21-2011] | |||||||
| Q94AI7 | 1131 | Protein TOPLESS OS=Arabid | yes | no | 0.991 | 0.977 | 0.829 | 0.0 | |
| Q0WV90 | 1120 | Topless-related protein 1 | no | no | 0.982 | 0.976 | 0.814 | 0.0 | |
| Q27GK7 | 1135 | Topless-related protein 4 | no | no | 0.989 | 0.970 | 0.682 | 0.0 | |
| Q9LRZ0 | 1131 | Topless-related protein 2 | no | no | 0.953 | 0.938 | 0.618 | 0.0 | |
| Q84JM4 | 1108 | Topless-related protein 3 | no | no | 0.955 | 0.960 | 0.596 | 0.0 | |
| Q00808 | 1356 | Vegetative incompatibilit | yes | no | 0.242 | 0.199 | 0.292 | 2e-18 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | no | no | 0.419 | 0.306 | 0.224 | 7e-15 | |
| Q54KL5 | 335 | WD repeat-containing prot | yes | no | 0.185 | 0.617 | 0.254 | 4e-13 | |
| Q8YV57 | 1683 | Uncharacterized WD repeat | no | no | 0.385 | 0.255 | 0.219 | 1e-11 | |
| Q8YTC2 | 1258 | Uncharacterized WD repeat | no | no | 0.425 | 0.376 | 0.209 | 2e-11 |
| >sp|Q94AI7|TPL_ARATH Protein TOPLESS OS=Arabidopsis thaliana GN=TPL PE=1 SV=1 | Back alignment and function desciption |
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Score = 1964 bits (5088), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 946/1140 (82%), Positives = 1027/1140 (90%), Gaps = 35/1140 (3%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDKHDR KAV+ILVKDLKVFSTFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFP L+NSRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
WQHQLCKNPRPNPDIKTLFVDH+CG PNGARAPSP NNPLLG +PKAG FPPLGAHGPFQ
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCGPPNGARAPSPVNNPLLGGIPKAGGFPPLGAHGPFQ 240
Query: 241 PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGD 300
PT +PVPTPLAGWMS+P +V HPAVS GAI LG PSIPAA LKHPRTPPTN S+DYPS D
Sbjct: 241 PTASPVPTPLAGWMSSPSSVPHPAVSAGAIALGGPSIPAA-LKHPRTPPTNASLDYPSAD 299
Query: 301 SDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSS 360
S+H+SKRTRP+GISDE+NL VN+LP+SF+G +H HS AF P+DLPKTV RTL+QGSS
Sbjct: 300 SEHVSKRTRPMGISDEVNLGVNMLPMSFSGQAHGHS--PAFKAPDDLPKTVARTLSQGSS 357
Query: 361 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 420
PMSMDFHP++QTLLLVGTNVGDIGLWEVGSRERLV + FKVWDL CSMPLQAALVK+P
Sbjct: 358 PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417
Query: 421 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 480
VSVNRVIWSPDGSLFGVAYSRHIVQ+YSYHGG+++RQHLEIDAHVGGVNDI+FS PNKQL
Sbjct: 418 VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQL 477
Query: 481 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 540
CVITCGDDKTIKVWDA G K++ FEGHEAPVYSVCPH+KENIQFIFSTALDGKIKAWLY
Sbjct: 478 CVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLY 537
Query: 541 DNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQGFRK 574
DN+GSRVDY+APGRWCTTMAYSADGTR TYQGF K
Sbjct: 538 DNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHK 597
Query: 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA 634
RSLGVVQFDTTKNR+LAAGDDFSIKFWDMD+VQLLT+ID DGGL ASPRIRFNK+G LLA
Sbjct: 598 RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEGSLLA 657
Query: 635 VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADR 694
VS N+N IKI+A SDG+RLL TFEN+ +SE+SKP I+ I+AAAAAAATSAG ADR
Sbjct: 658 VSGNENVIKIMANSDGLRLLHTFENI------SSESSKPAINSIAAAAAAAATSAGHADR 711
Query: 695 AASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 754
+A++VSI GMNGD R++ DVKP ITEESNDKSK+WKLTE+SEP+QCRSLRLPENLR KI
Sbjct: 712 SANVVSIQGMNGDSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPENLRVAKI 771
Query: 755 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 814
SRLIFTNSGNAILALASNAIHLLWKWQR ERN++GKATAS+ PQ WQP SGI+MTNDV +
Sbjct: 772 SRLIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASGILMTNDVAE 831
Query: 815 SNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI 874
+NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI
Sbjct: 832 TNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI 891
Query: 875 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 934
IAIGMDDS+IQIYNVRVDEVKSKLKGHSKRITGLAFS+ LNVLVSSGAD+QLCVW++DGW
Sbjct: 892 IAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDGW 951
Query: 935 EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRES 994
EKQ+++ L +P GR +A SDTRVQFHQDQ HFLVVHETQLAI+ETTKLEC+KQW RES
Sbjct: 952 EKQRSKVLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLECMKQWAVRES 1011
Query: 995 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIA 1054
APITHATFSCDSQLVYA F+DATVCVFS+ANL+LRCR+NPSAYLPA +S+SNVHPLVIA
Sbjct: 1012 LAPITHATFSCDSQLVYASFMDATVCVFSSANLRLRCRVNPSAYLPASLSNSNVHPLVIA 1071
Query: 1055 AHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR 1114
AHPQEPN FA+GLSDGGVH+FEPLESEGKWGV PP +NGS S P P VG S SDQ QR
Sbjct: 1072 AHPQEPNMFAVGLSDGGVHIFEPLESEGKWGVAPPAENGSASGAPTAPSVGASASDQPQR 1131
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Transcriptional corepressor. May repress the expression of root-promoting genes in the top half of the embryo to allow proper differentiation of the shoot pole during the transition stage of embryogenesis. Regulates the expression of PLT1 and PLT2. Negative regulator of jasmonate responses. Negative regulator of auxin responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WV90|TPR1_ARATH Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 1945 bits (5039), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 929/1140 (81%), Positives = 1017/1140 (89%), Gaps = 46/1140 (4%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD+HDR KAV+ILVKDLKVFSTFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFP L+ SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
WQHQLCKNPRPNPDIKTLFVDH+C PN ARAPSP NNPLLGSLPKA FPPLGAHGPFQ
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCRLPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPFQ 240
Query: 241 PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGD 300
PTP+PVPTPLAGWMS+P +V HPAVSGG I LG+PSI AALKHPRTPP+N +VDYPSGD
Sbjct: 241 PTPSPVPTPLAGWMSSPSSVPHPAVSGGPIALGAPSI-QAALKHPRTPPSNSAVDYPSGD 299
Query: 301 SDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSS 360
SDH+SKRTRP+GISDE++L VN+LP++F G +H H+ Q F P+DLPKTV RTL+QGSS
Sbjct: 300 SDHVSKRTRPMGISDEVSLGVNMLPMTFPGQAHGHN--QTFKAPDDLPKTVARTLSQGSS 357
Query: 361 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 420
PMSMDFHP++QTLLLVGTNVGDIGLWEVGSRERLV + FKVWDL CSMPLQAALVK+P
Sbjct: 358 PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417
Query: 421 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 480
VSVNRVIWSPDGSLFGVAYSRHIVQ+YSYHGG+++RQHLEIDAHVGGVNDIAFS PNKQL
Sbjct: 418 VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDIAFSTPNKQL 477
Query: 481 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 540
CV TCGDDKTIKVWDA G K+Y FEGHEAPVYS+CPH+KENIQFIFSTALDGKIKAWLY
Sbjct: 478 CVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLY 537
Query: 541 DNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQGFRK 574
DN+GSRVDYEAPGRWCTTMAYSADGTR TYQGF K
Sbjct: 538 DNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHK 597
Query: 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA 634
RSLGVVQFDTTKNR+LAAGDDFSIKFWDMD++QLLT+IDADGGL ASPRIRFNK+G LLA
Sbjct: 598 RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGGLQASPRIRFNKEGSLLA 657
Query: 635 VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADR 694
VS NDN IK++A SDG+RLL T ENL +SE+SKP I+ I + +R
Sbjct: 658 VSANDNMIKVMANSDGLRLLHTVENL------SSESSKPAINSIP-----------MVER 700
Query: 695 AASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 754
AS+VSIPGMNGD R++ DVKP ITEESNDKSKVWKLTE+ EP+QCRSLRLPEN+R TKI
Sbjct: 701 PASVVSIPGMNGDSRNMVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLPENMRVTKI 760
Query: 755 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 814
SRLIFTNSGNAILALASNAIHLLWKWQR +RN++GKATAS+ PQ WQP SGI+MTNDV +
Sbjct: 761 SRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASGILMTNDVAE 820
Query: 815 SNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI 874
+NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI
Sbjct: 821 TNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI 880
Query: 875 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 934
IAIGMDDS+IQIYNVRVDEVKSKLKGHSKRITGLAFS+ LNVLVSSGAD+QLCVW++DGW
Sbjct: 881 IAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDGW 940
Query: 935 EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRES 994
EKQK++ LQIP GR+ ++ SDTRVQFHQDQ+HFLVVHETQLAI+ETTKLEC+KQW RES
Sbjct: 941 EKQKSKVLQIPQGRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLECMKQWPVRES 1000
Query: 995 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIA 1054
+APITHATFSCDSQL+Y F+DAT+CVFS+ANL+LRCR+NPSAYLPA +S+SNVHPLVIA
Sbjct: 1001 AAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLSNSNVHPLVIA 1060
Query: 1055 AHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR 1114
AHPQE N FA+GLSDGGVH+FEPLESEGKWGV PP +NGS S++ ATP VG S SDQ QR
Sbjct: 1061 AHPQESNMFAVGLSDGGVHIFEPLESEGKWGVAPPPENGSASAVTATPSVGASASDQPQR 1120
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Transcriptional corepressor. Activates TIR-NB-LRR R protein-mediated immune responses through repression of negative regulators such as CNGC2/DND1. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q27GK7|TPR4_ARATH Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1615 bits (4181), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 783/1147 (68%), Positives = 913/1147 (79%), Gaps = 45/1147 (3%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
MSSLSRELVFLILQFLDEEKFK+TVH+LE+ESGFFFNM+YFED V G WDDVEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKDTVHRLEKESGFFFNMRYFEDSVTAGEWDDVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDK D AKAV+ILVK+LKVFSTFNEELFKEIT LLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKKDHAKAVDILVKELKVFSTFNEELFKEITMLLT 120
Query: 121 LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
L NFRENEQLSKYGDTKSAR IML ELKKLIEANPLFRDKLQFP+LKNSRLRTLINQSLN
Sbjct: 121 LTNFRENEQLSKYGDTKSARGIMLGELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
WQHQLCKNPRPNPDIKTLFVDHTCG PNGA PSP N L+GS+PK G FPPLGAHGPFQ
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHTCGHPNGAHTPSPTTNHLMGSVPKVGGFPPLGAHGPFQ 240
Query: 241 PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKH--PRTPPTNP-SVDYP 297
PTPAP+ T LAGWM NP +V HP VS G IGLG+P+ + LK PR+PPTN S+DY
Sbjct: 241 PTPAPLTTSLAGWMPNP-SVQHPTVSAGPIGLGAPNSAVSMLKRERPRSPPTNSLSMDYQ 299
Query: 298 SGDSDHLSKRTRPIGISDEIN-LPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLN 356
+ DS+ + KR RP GISD +N LPVNVLPV++ G SH+H+ +ST +DLPK V+R L+
Sbjct: 300 TADSESVLKRPRPFGISDGVNNLPVNVLPVTYPGQSHAHA---TYST-DDLPKNVSRILS 355
Query: 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALV 416
QGS+ SMDFHPVQQT+LLVGTN+GDI +WEVGSRE+LV R+FKVWDL C++ LQA+L
Sbjct: 356 QGSAIKSMDFHPVQQTMLLVGTNLGDIAIWEVGSREKLVSRSFKVWDLATCTVNLQASLA 415
Query: 417 KDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP 476
+ +VNRV+WSPDG L GVAYS+HIV IYSYHGG+++R HLEIDAH G VND+AFS P
Sbjct: 416 SEYTAAVNRVVWSPDGGLLGVAYSKHIVHIYSYHGGEDLRNHLEIDAHAGNVNDLAFSQP 475
Query: 477 NKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIK 536
N+QLCV+TCG+DKTIKVWDA G K + FEGHEAPVYSVCPH KENIQFIFSTA+DGKIK
Sbjct: 476 NQQLCVVTCGEDKTIKVWDAVTGNKLHTFEGHEAPVYSVCPHQKENIQFIFSTAVDGKIK 535
Query: 537 AWLYDNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQ 570
AWLYDN+GSRVDY+APGR CT+MAY ADGTR TY
Sbjct: 536 AWLYDNMGSRVDYDAPGRSCTSMAYCADGTRLFSCGTSKEGESFIVEWNESEGAVKRTYL 595
Query: 571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG 630
G KRS+GVVQFDT KN+FL AGD+F +KFWDMDSV LL+S A+GGLP+SP +R NK+G
Sbjct: 596 GLGKRSVGVVQFDTMKNKFLVAGDEFQVKFWDMDSVDLLSSTAAEGGLPSSPCLRINKEG 655
Query: 631 CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS---KPTISPISAAAAAAAT 687
LLAVST DNGIKILA ++G R+L + N D+SR S P + ++
Sbjct: 656 TLLAVSTTDNGIKILANAEGSRILHSMANRGLDSSRAPPGSVAKGPIVGTFGTPNSSTGM 715
Query: 688 SAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE 747
S + +R+ + S+ G+NGD RSL DVKPRI +++ +KSK WKLTE+SE +Q R+LRLP+
Sbjct: 716 SLSMGERSGPVASVTGLNGDNRSLPDVKPRIADDA-EKSKTWKLTEISERSQLRTLRLPD 774
Query: 748 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIM 807
L ++ +LI+TNSG AILALA NA H LWKWQ++ERN GKA ++V PQLWQP SG++
Sbjct: 775 TLLPARVVKLIYTNSGGAILALAENAAHKLWKWQKSERNLLGKANSNVPPQLWQPSSGVL 834
Query: 808 MTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAF 867
MTND + N E+ VPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFM PPPAAT LAF
Sbjct: 835 MTNDTREGNKEDVVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMAPPPAATSLAF 894
Query: 868 HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLC 927
HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH KR+TGLAFS+ LNVLVSSGADSQLC
Sbjct: 895 HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHQKRVTGLAFSNVLNVLVSSGADSQLC 954
Query: 928 VWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVK 987
VWS DGWEKQ ++ +QIP+G +P + TRVQFHQDQIH LVVH +QLAI+E KLE +K
Sbjct: 955 VWSMDGWEKQASKQIQIPSGHSPNPLAHTRVQFHQDQIHVLVVHASQLAIYEAPKLENMK 1014
Query: 988 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSN 1047
QW+P+ESS +T A +SCDSQ +YA F D +V + +A L+L+CRI P++YLP+ SS
Sbjct: 1015 QWIPKESSGSVTDAVYSCDSQSIYAAFDDGSVSILTATTLQLKCRIGPNSYLPSN-PSSR 1073
Query: 1048 VHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGS 1107
V+P +AAHP EPN+FA+GL+DGGVHV EP EGKWG+ P +NG+ S+ + P
Sbjct: 1074 VYPATVAAHPSEPNQFAVGLTDGGVHVIEPPGPEGKWGISAPPENGAGPSVSSAP----- 1128
Query: 1108 GSDQAQR 1114
GSDQ R
Sbjct: 1129 GSDQQPR 1135
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Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LRZ0|TPR2_ARATH Topless-related protein 2 OS=Arabidopsis thaliana GN=TPR2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1385 bits (3585), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 695/1123 (61%), Positives = 844/1123 (75%), Gaps = 61/1123 (5%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKE+VHKLEQESGFFFN+KYFE++ G WD+VEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD++DRAKAVEIL KDLKVF+TFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
LENFRENEQLSKYGDTKSARSIM ELKKLIEANPLFR+KL FP+ K SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAH-GPF 239
WQHQLCKNPRPNPDIKTLF+DH+C NGARA +P N P + ++ + F PLG H GPF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFLDHSCSPSNGARALTPVNLP-VAAVARPSNFVPLGVHGGPF 239
Query: 240 QP--TPAPVPTPLAGWMSNP-PTVTHPAVSGGAIGLGSPSIPAAA--LKHPRTPPTNPSV 294
Q PAP LAGWM+NP P+ + P SG P P+ LKHPR P + +
Sbjct: 240 QSNPAPAPNANALAGWMANPNPSSSVP--SGVVAASPFPMQPSQVNELKHPRAPSNSLGL 297
Query: 295 -DYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTR 353
DY S D + L KR R S+E+ P +HSH A + +DLP+ V
Sbjct: 298 MDYQSADHEQLMKRLRSAQTSNEVTYP-------------AHSHPPA--SLDDLPRNVVS 342
Query: 354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQA 413
T+ QGS +SMDFHP TLL VG + G++ LWEVGSRE++V FK+W++ ACS+ Q
Sbjct: 343 TIRQGSVVISMDFHPSHHTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQG 402
Query: 414 ALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF 473
++VK+P +SV RV WSPDG+L GV++++H++ +Y+Y G D +RQHLEIDAHVG VND+AF
Sbjct: 403 SIVKEPSISVTRVAWSPDGNLLGVSFTKHLIHVYAYQGSD-LRQHLEIDAHVGCVNDLAF 461
Query: 474 SHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDG 533
+HPNKQ+CV+TCGDDK IKVWD + G K + FEGHEAPVYS+CPH KENIQFIFSTALDG
Sbjct: 462 AHPNKQMCVVTCGDDKLIKVWDLS-GKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDG 520
Query: 534 KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT--------------------------R 567
KIKAWLYDN+GSRVDY+APG+WCTTM YSADG+ R
Sbjct: 521 KIKAWLYDNVGSRVDYDAPGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKR 580
Query: 568 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN 627
TY GFRK+S GVVQFDTT+NRFLA G+D IKFW+MD+ LLT ++A+GGLP PR+RFN
Sbjct: 581 TYLGFRKKSAGVVQFDTTRNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFN 640
Query: 628 KDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAAT 687
KDG LLAV+T DNG KILA +DG+R LR FE +++AS+ S + K + S ++++ + A
Sbjct: 641 KDGNLLAVTTADNGFKILANTDGLRTLRAFEARSFEASKASIDMKVSTSAMASSISPAIG 700
Query: 688 SAGLADRAASMVSIPGMNG-DVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLP 746
D + P NG + S KPR +S DKSK +LTE+ +P QCR + +P
Sbjct: 701 KIEHMDAGSPARPTPIPNGIEAMSRTMEKPR-NLDSVDKSKPLELTEIVDPTQCRQVTMP 759
Query: 747 ENLRA-TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSG 805
++ + +K++RL++TNSG +LAL SN + LWKW R E+N +GKATASV PQ WQP SG
Sbjct: 760 DSKDSVSKVARLLYTNSGVGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHWQPNSG 819
Query: 806 IMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFL 865
++M NDV + NPE +VPC ALSKNDSYVMSA GGK+SLFNMMTFK M TFMPPPPA+TFL
Sbjct: 820 LLMANDVPE-NPEGSVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFL 878
Query: 866 AFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ 925
AFHPQDNNIIAIGM+DSSI IYNVRVDEVK+KLKGH K ITGLAFS ALN+LVSSGAD+Q
Sbjct: 879 AFHPQDNNIIAIGMEDSSIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQ 938
Query: 926 LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC 985
L W++D WEK+K+ +Q+P G+ P DTRVQFH DQI LV HETQLAI++ +K+EC
Sbjct: 939 LFFWTADSWEKKKSSAIQLPPGKAPVG--DTRVQFHNDQIQLLVSHETQLAIYDASKMEC 996
Query: 986 VKQWVPRES-SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV- 1043
+ +WVP+E+ S+PIT A++SC+SQLVYA F D + VF A +L+LRCRI PSAY+P
Sbjct: 997 IHKWVPQEALSSPITSASYSCNSQLVYASFADGNIAVFDAESLRLRCRIAPSAYMPQPTP 1056
Query: 1044 SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGV 1086
+S+ + P VI AHPQEPN+ A+GLSDG V V EP E +WGV
Sbjct: 1057 NSAPIFPQVITAHPQEPNQLAVGLSDGSVKVIEPSELSRRWGV 1099
|
Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84JM4|TPR3_ARATH Topless-related protein 3 OS=Arabidopsis thaliana GN=TPR3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1338 bits (3462), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 675/1132 (59%), Positives = 828/1132 (73%), Gaps = 68/1132 (6%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
MSSLSRELVFLILQFL+EEKFKE+VH+LE+ESGFFFN KYF+++V G WDDVE YLSGF
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKESVHRLEKESGFFFNTKYFDEKVLAGEWDDVETYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD+ ++AKAVEILV+DL+VFSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQEKAKAVEILVQDLRVFSTFNEELYKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
L+NFRENEQLSKYGDTK+AR IML ELKKLIEANPLFRDKL FP L++SRLRTLINQSLN
Sbjct: 121 LQNFRENEQLSKYGDTKTARGIMLGELKKLIEANPLFRDKLMFPTLRSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAH-GPF 239
WQHQLCKNPRPNPDIKTLF DHTC PNG APS N P+ +L K +P LG H
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCTLPNGPLAPSAVNQPVT-TLTKPAAYPSLGPHVPFP 239
Query: 240 QPTPAPVPTPLAGWM--SNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPS-VDY 296
A LA WM ++ + AV A+ + P + LK PRTPP P VDY
Sbjct: 240 PGPAAANAGALASWMAAASGASAVQAAVVTPAL-MPQPQNQMSILKRPRTPPATPGIVDY 298
Query: 297 PSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLN 356
+ D + L KR RP +E+ P QA + EDLP L+
Sbjct: 299 QNPDHE-LMKRLRPAPSVEEVTYPA--------------PRQQAPWSLEDLPTKAALALH 343
Query: 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALV 416
QGS+ SM+F+P+Q TLLLVG+ G+I LWE+ +RERLV R FK+WD+ CS QA +
Sbjct: 344 QGSTVTSMEFYPMQNTLLLVGSATGEITLWELAARERLVSRPFKIWDMSNCSHQFQALIA 403
Query: 417 KDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP 476
K+ +SV RV WSPDG+ GVA+++H++Q+Y++ G +++RQH EIDAHVG VND+AF++P
Sbjct: 404 KETPISVTRVAWSPDGNFIGVAFTKHLIQLYAFSGPNDLRQHTEIDAHVGAVNDLAFANP 463
Query: 477 NKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIK 536
N+QLCVITCGDDK IKVWD + G K + FEGH+APVYS+CPH+KENIQFIFSTA+DGKIK
Sbjct: 464 NRQLCVITCGDDKLIKVWDVS-GRKHFTFEGHDAPVYSICPHYKENIQFIFSTAIDGKIK 522
Query: 537 AWLYDNLGSRVDYEAPGRWCTTMAYSADGT--------------------------RTYQ 570
AWLYDNLGSRVDY+APG+WCT M YSADGT RTY+
Sbjct: 523 AWLYDNLGSRVDYDAPGKWCTRMLYSADGTRLFSCGTSKDGDSFLVEWNESEGSIKRTYK 582
Query: 571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG 630
F+K+ GVVQFDT+KN FLA G+D IKFWDM+++ +LTS DA+GGLPA P +RFNKDG
Sbjct: 583 EFQKKLAGVVQFDTSKNHFLAVGEDGQIKFWDMNNINVLTSTDAEGGLPALPHLRFNKDG 642
Query: 631 CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAG 690
LLAV+T DNG KILA G R LR E A + RT + K + A A+
Sbjct: 643 NLLAVTTADNGFKILANPAGFRSLRAMETPASETMRTPVDFK------AVPGAPVASVNC 696
Query: 691 LADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL- 749
+R + + +NG + K RI ++S DK K W+L E+ +P+QC LP+
Sbjct: 697 KVERGSPVRHSQMLNG----VDPSKSRI-DDSTDKPKSWQLAEILDPSQCFQATLPDTAG 751
Query: 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 809
+TK+ +L++TNSG ILAL SN I LWKW E+N SGKATA+V PQ WQP SG++MT
Sbjct: 752 SSTKVVQLLYTNSGAGILALGSNGIQRLWKWVPNEQNPSGKATATVVPQHWQPNSGLLMT 811
Query: 810 NDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHP 869
NDV+ N E A PC ALSKNDSYVMSA+GGK+SLFNMMTFK M TFMPPPPA+TFLAFHP
Sbjct: 812 NDVSGVNLENAAPCIALSKNDSYVMSAAGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHP 871
Query: 870 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 929
QDNN+IAIGM+DS+I IYNVRVDEVKSKLKGH KRITGLAFS ALN+LVSSGAD+Q+C W
Sbjct: 872 QDNNVIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTALNILVSSGADAQICFW 931
Query: 930 SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQW 989
S D WEK+K+ +Q+P G+ A DTRVQFH DQ+ LVVHETQLA+F+ +K+EC++QW
Sbjct: 932 SIDTWEKRKSVAIQMPAGK--AANGDTRVQFHVDQLRILVVHETQLAVFDASKMECIRQW 989
Query: 990 VPRES-SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNV 1048
+P++S SAPI+ A ++C+SQL+Y F D + VF A +L+LRCRI+PSAYLP G + +
Sbjct: 990 IPQDSLSAPISSAVYACNSQLIYTTFRDGNIGVFDADSLRLRCRISPSAYLPQG--NQGL 1047
Query: 1049 HPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPP---VDNGSTSS 1097
PLV+AAHPQ+PN+FA+GL+DG V + EP E EGKWG+ PP +++ ST+S
Sbjct: 1048 SPLVVAAHPQDPNQFAVGLNDGSVKMMEPTEGEGKWGMIPPSEAINSPSTTS 1099
|
Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 95/325 (29%), Positives = 135/325 (41%), Gaps = 55/325 (16%)
Query: 350 TVTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDL--GA 406
T T+TL GSS +S+ F P Q V + GD + K+WD G
Sbjct: 958 TCTQTLEGHGSSVLSVAFSPDGQR---VASGSGD--------------KTIKIWDTASGT 1000
Query: 407 CSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVG 466
C+ L+ G SV V +SPDG ++I+ G Q LE H G
Sbjct: 1001 CTQTLEG-----HGGSVWSVAFSPDGQRVASGSDDKTIKIWDTASG-TCTQTLE--GHGG 1052
Query: 467 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI 526
V + FS P+ Q V + DD TIK+WDA +G EGH V+SV + Q +
Sbjct: 1053 WVQSVVFS-PDGQR-VASGSDDHTIKIWDAVSGTCTQTLEGHGDSVWSVA--FSPDGQRV 1108
Query: 527 FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV------- 579
S ++DG IK W + E G W ++A+S DG R G ++ +
Sbjct: 1109 ASGSIDGTIKIWDAASGTCTQTLEGHGGWVHSVAFSPDGQRVASGSIDGTIKIWDAASGT 1168
Query: 580 --------------VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIR 625
V F R + D +IK WD S +++ GG S +
Sbjct: 1169 CTQTLEGHGGWVQSVAFSPDGQRVASGSSDKTIKIWDTASGTCTQTLEGHGGWVQS--VA 1226
Query: 626 FNKDGCLLAVSTNDNGIKILATSDG 650
F+ DG +A ++DN IKI T+ G
Sbjct: 1227 FSPDGQRVASGSSDNTIKIWDTASG 1251
|
Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c. Podospora anserina (taxid: 5145) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 84.0 bits (206), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 119/531 (22%), Positives = 215/531 (40%), Gaps = 64/531 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
SV V +SPDG LF S IV+ + G E+ L H VN + FS K L
Sbjct: 866 SVLTVAFSPDGKLFATGDSGGIVRFWEAATGKEL---LTCKGHNSWVNSVGFSQDGKMLA 922
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
+ DD+T+++WD ++G F+GH + V SV N + S + D ++ W
Sbjct: 923 --SGSDDQTVRLWDISSGQCLKTFKGHTSRVRSVV--FSPNSLMLASGSSDQTVRLWDIS 978
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD-DFSIKF 600
+ ++ W ++A++ DG+ LA G D +++
Sbjct: 979 SGECLYIFQGHTGWVYSVAFNLDGS----------------------MLATGSGDQTVRL 1016
Query: 601 WDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL 660
WD+ S Q G + F+ DG +LA ++D +++ S G L T +
Sbjct: 1017 WDISSSQCFYIFQ--GHTSCVRSVVFSSDGAMLASGSDDQTVRLWDISSG-NCLYTLQG- 1072
Query: 661 AYDASRTSENSKPTISPISAAAAAAATS--AGLADRAAS--MVSIPGMNGDVRSLADVKP 716
TS SP A A+ L D ++ + ++ G VR L
Sbjct: 1073 -----HTSCVRSVVFSPDGAMLASGGDDQIVRLWDISSGNCLYTLQGYTSWVRFLVFSPN 1127
Query: 717 RITEESNDKSKVWKLTELSEPNQCRSLRLPEN-LRATKIS---RLIFTNSGNAILAL--- 769
+T + ++ +L ++S +L+ N + A S + + SG+ + L
Sbjct: 1128 GVTLANGSSDQIVRLWDISSKKCLYTLQGHTNWVNAVAFSPDGATLASGSGDQTVRLWDI 1187
Query: 770 -ASNAIHLLW---KW-QRTERNSSGKATASVAP----QLWQPPSGIMMTNDVTDSNPEEA 820
+S +++L W N G AS + +LW+ S + T
Sbjct: 1188 SSSKCLYILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCL---CTFQGHTSW 1244
Query: 821 VPCFALSKNDSYVMSASGGK-ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM 879
V + + S + S S K + L+++ + K + TF +AF+P D +++A G
Sbjct: 1245 VNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHTFQGHTNWVNSVAFNP-DGSMLASGS 1303
Query: 880 DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
D +++++ + + +GH+ ++ + FS +L S D + +WS
Sbjct: 1304 GDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWS 1354
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q54KL5|WDR5_DICDI WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum GN=wdr5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 111/236 (47%), Gaps = 29/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
S++ V +SPDG A + ++I+ + G R ++ H G++DIA+S +K +C
Sbjct: 48 SISSVKFSPDGKWLASASADKTIKIWGAYDGKFERT---LEGHKEGISDIAWSQDSKLIC 104
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
+ DDKTIK+WD +G +GH+ V+ V + + N+ I S + D ++ W
Sbjct: 105 --SASDDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNPQSNL--IVSGSFDENVRIWDV- 159
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
N G CT M + T V F+ ++ D +++ W
Sbjct: 160 NTGE----------CTKMISAHSDPVT----------GVHFNRDGTLVVSGSYDGTVRIW 199
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
D + QLL +I + G S ++F+ +G + T DN +++ + ++ + L+T+
Sbjct: 200 DTTTGQLLNTISTEDGKEVS-FVKFSPNGKFVLAGTLDNTLRLWSYNNNKKCLKTY 254
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 111/505 (21%), Positives = 200/505 (39%), Gaps = 75/505 (14%)
Query: 454 EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 513
E+++ ++ H GV I+ S + + + DKTIK+W + +G GHE VY
Sbjct: 1061 EMQERNRLEGHKDGVISISISRDGQ--TIASGSLDKTIKLW-SRDGRLFRTLNGHEDAVY 1117
Query: 514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT--RTYQG 571
SV + Q I S D IK W ++DGT +T G
Sbjct: 1118 SVS--FSPDGQTIASGGSDKTIKLW----------------------QTSDGTLLKTITG 1153
Query: 572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC 631
++++ V F +A D SIK WD S QLL ++ G +RF+ DG
Sbjct: 1154 -HEQTVNNVYFSPDGKNLASASSDHSIKLWDTTSGQLLMTLT--GHSAGVITVRFSPDGQ 1210
Query: 632 LLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGL 691
+A + D +K+ DG +LL+T + S + P +++A+A
Sbjct: 1211 TIAAGSEDKTVKLWHRQDG-KLLKTLN--GHQDWVNSLSFSPDGKTLASASADKTIKLWR 1267
Query: 692 ADRAASMVSIPGMNG---DVRSLADVKPRITEESNDKSKVWK------------------ 730
+ ++ G N DV +D K + ++ K+W
Sbjct: 1268 IADGKLVKTLKGHNDSVWDVNFSSDGKAIASASRDNTIKLWNRHGIELETFTGHSGGVYA 1327
Query: 731 LTELSEPNQCRSLRLPENLRATK---ISRLIFTNSGNAILALASNAIHLLWKWQRTERNS 787
+ L + N S L +R + IS L + + A++ +H + +
Sbjct: 1328 VNFLPDSNIIASASLDNTIRLWQRPLISPLEVLAGNSGVYAVS--FLH--------DGSI 1377
Query: 788 SGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGK-ISLFNM 846
A A QLW G ++ + +A+ + + + SA+ K + ++ +
Sbjct: 1378 IATAGADGNIQLWHSQDGSLLKTLPGN----KAIYGISFTPQGDLIASANADKTVKIWRV 1433
Query: 847 MTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT 906
K + T + + F P D +A D++++++NV + K LKGH+ +
Sbjct: 1434 RDGKALKTLIGHDNEVNKVNFSP-DGKTLASASRDNTVKLWNVSDGKFKKTLKGHTDEVF 1492
Query: 907 GLAFSHALNVLVSSGADSQLCVWSS 931
++FS ++ S+ AD + +W S
Sbjct: 1493 WVSFSPDGKIIASASADKTIRLWDS 1517
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 114/543 (20%), Positives = 205/543 (37%), Gaps = 69/543 (12%)
Query: 429 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD 488
SP+G L + V+++ G + L H V + FS P+ ++ + +CG D
Sbjct: 651 SPEGQLLATCDTDCHVRVWEVKSGKLL---LICRGHSNWVRFVVFS-PDGEI-LASCGAD 705
Query: 489 KTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD 548
+ +K+W +G GHE V+SV H + + + S + D IK W +
Sbjct: 706 ENVKLWSVRDGVCIKTLTGHEHEVFSVAFH--PDGETLASASGDKTIKLWDIQDGTCLQT 763
Query: 549 YEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL 608
W +A+S DG N ++ D +IK WD+ +
Sbjct: 764 LTGHTDWVRCVAFSPDG---------------------NTLASSAADHTIKLWDVSQGKC 802
Query: 609 LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTS 668
L ++ + G S + F+ DG LA + D IKI G L+T+ + + S S
Sbjct: 803 LRTLKSHTGWVRS--VAFSADGQTLASGSGDRTIKIWNYHTG-ECLKTY--IGHTNSVYS 857
Query: 669 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLA---DVKPRITEESNDK 725
P + + + + ++ G +V S+A D + +
Sbjct: 858 IAYSPDSKILVSGSGDRTIKLWDCQTHICIKTLHGHTNEVCSVAFSPDGQTLACVSLDQS 917
Query: 726 SKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHL-LWKWQRTE 784
++W QC L T + + + ILA SN + LW WQ +
Sbjct: 918 VRLWN----CRTGQC----LKAWYGNTDWALPVAFSPDRQILASGSNDKTVKLWDWQTGK 969
Query: 785 RNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPE----EAVPCFA-LSKNDSYVMS---- 835
SS + + P + + TDS+ CF L ++ +V +
Sbjct: 970 YISSLEGHTDFIYGIAFSPDSQTLASASTDSSVRLWNISTGQCFQILLEHTDWVYAVVFH 1029
Query: 836 ------ASGG---KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQI 886
A+G + L+N+ T + + T +A+ P D ++A D S+++
Sbjct: 1030 PQGKIIATGSADCTVKLWNISTGQCLKTLSEHSDKILGMAWSP-DGQLLASASADQSVRL 1088
Query: 887 YNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPT 946
++ L+GHS R+ FS ++ + D + + W+ Q+ + L+ T
Sbjct: 1089 WDCCTGRCVGILRGHSNRVYSAIFSPNGEIIATCSTDQTVKI-----WDWQQGKCLKTLT 1143
Query: 947 GRT 949
G T
Sbjct: 1144 GHT 1146
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1114 | ||||||
| 24461849 | 1127 | CTV.2 [Citrus trifoliata] | 0.988 | 0.976 | 0.964 | 0.0 | |
| 224134436 | 1172 | predicted protein [Populus trichocarpa] | 0.995 | 0.946 | 0.850 | 0.0 | |
| 356550630 | 1132 | PREDICTED: topless-related protein 1-lik | 0.991 | 0.976 | 0.856 | 0.0 | |
| 225463556 | 1138 | PREDICTED: protein TOPLESS [Vitis vinife | 0.993 | 0.972 | 0.858 | 0.0 | |
| 449517721 | 1139 | PREDICTED: LOW QUALITY PROTEIN: protein | 0.995 | 0.973 | 0.849 | 0.0 | |
| 449468952 | 1139 | PREDICTED: protein TOPLESS-like [Cucumis | 0.995 | 0.973 | 0.849 | 0.0 | |
| 356526242 | 1133 | PREDICTED: protein TOPLESS-like [Glycine | 0.991 | 0.975 | 0.858 | 0.0 | |
| 255553317 | 1115 | WD-repeat protein, putative [Ricinus com | 0.975 | 0.974 | 0.852 | 0.0 | |
| 357458875 | 1138 | WD repeat-containing protein, putative [ | 0.993 | 0.972 | 0.842 | 0.0 | |
| 356554802 | 1136 | PREDICTED: topless-related protein 1-lik | 0.995 | 0.976 | 0.842 | 0.0 |
| >gi|24461849|gb|AAN62336.1|AF506028_3 CTV.2 [Citrus trifoliata] | Back alignment and taxonomy information |
|---|
Score = 2236 bits (5795), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1099/1140 (96%), Positives = 1099/1140 (96%), Gaps = 39/1140 (3%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNS SLN
Sbjct: 121 LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNS--------SLN 172
Query: 181 WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ
Sbjct: 173 WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 232
Query: 241 PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGD 300
PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGD
Sbjct: 233 PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGD 292
Query: 301 SDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSS 360
SDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHS QAFS PEDLPKTVTRTLNQGSS
Sbjct: 293 SDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHS----QAFSAPEDLPKTVTRTLNQGSS 348
Query: 361 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 420
PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG
Sbjct: 349 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 408
Query: 421 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 480
VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL
Sbjct: 409 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 468
Query: 481 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 540
CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY
Sbjct: 469 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 528
Query: 541 DNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQGFRK 574
DNLGSRVDYEAPGRWCTTMAYSADGTR TYQGFRK
Sbjct: 529 DNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFRK 588
Query: 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA 634
RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA
Sbjct: 589 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA 648
Query: 635 VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADR 694
VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADR
Sbjct: 649 VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADR 708
Query: 695 AASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 754
AASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI
Sbjct: 709 AASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 768
Query: 755 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 814
SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD
Sbjct: 769 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 828
Query: 815 SNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI 874
SNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI
Sbjct: 829 SNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI 888
Query: 875 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 934
IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW SDGW
Sbjct: 889 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWGSDGW 948
Query: 935 EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRES 994
EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRES
Sbjct: 949 EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRES 1008
Query: 995 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIA 1054
SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV SSNVHPLVIA
Sbjct: 1009 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV-SSNVHPLVIA 1067
Query: 1055 AHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR 1114
AHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR
Sbjct: 1068 AHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR 1127
|
Source: Citrus trifoliata Species: Citrus trifoliata Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224134436|ref|XP_002327405.1| predicted protein [Populus trichocarpa] gi|222835959|gb|EEE74380.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2051 bits (5313), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1001/1177 (85%), Positives = 1054/1177 (89%), Gaps = 68/1177 (5%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDKHDR+KAVEILVKDLKVFSTFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
WQHQLCK PR NPDIKTLF DH+CGQPNGARAPSPANNPLLGSLPKAG FPPLGAHGPFQ
Sbjct: 181 WQHQLCKTPRSNPDIKTLFFDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQ 240
Query: 241 PTPAPVPTPLAGWMSNPPTVTHPAVSGG-AIGLGSPSIPA-------------------- 279
PTPAPVP PLAGWMSNPPTVTHPAVSGG AIGLG+PSI
Sbjct: 241 PTPAPVPAPLAGWMSNPPTVTHPAVSGGGAIGLGAPSISGSSFLLFAIDASANHHTEYVS 300
Query: 280 ----------------AALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNV 323
AALKHPRTPP+NPSVDYPSGD DH++KRTRP+GISDE+NLPVNV
Sbjct: 301 IHVSLFNNICILLPCVAALKHPRTPPSNPSVDYPSGDPDHVAKRTRPMGISDEVNLPVNV 360
Query: 324 LPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDI 383
LP+SF GH H H Q F+ P+DLPK V RTLNQGSSPMSMDFHPVQQT+LLVGTNVG+I
Sbjct: 361 LPMSFPGHGHGHG--QTFNAPDDLPKAVVRTLNQGSSPMSMDFHPVQQTILLVGTNVGEI 418
Query: 384 GLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI 443
GLWEVGSRERLVLRNFKVWDL ACSMPLQAALVKDPGVSVNRVIWSPDG+LFGVAYSRHI
Sbjct: 419 GLWEVGSRERLVLRNFKVWDLNACSMPLQAALVKDPGVSVNRVIWSPDGNLFGVAYSRHI 478
Query: 444 VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY 503
VQIYSYHG D+VRQHLEIDAHVGGVND+AFS PNKQLCVITCGDDK IKVWDA GAKQY
Sbjct: 479 VQIYSYHGNDDVRQHLEIDAHVGGVNDLAFSTPNKQLCVITCGDDKIIKVWDAATGAKQY 538
Query: 504 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA 563
FEGHEAPVYS+CPH+KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA
Sbjct: 539 TFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA 598
Query: 564 DGTR--------------------------TYQGFRKRSLGVVQFDTTKNRFLAAGDDFS 597
DGTR TY GFRK SLGVVQFDTTKNRFLAAGDDFS
Sbjct: 599 DGTRLFSCGTSKDGESYIVEWNESEGAVKRTYVGFRKHSLGVVQFDTTKNRFLAAGDDFS 658
Query: 598 IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
IKFWDMDSVQLLT+IDADGGLPASPRIRFNK+G LLAVS NDNGIKILA SDGIRLLRTF
Sbjct: 659 IKFWDMDSVQLLTTIDADGGLPASPRIRFNKEGTLLAVSANDNGIKILANSDGIRLLRTF 718
Query: 658 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPR 717
ENL+YDASR SE+ PT++PISAAAAAAATS+GLADR AS+V++ GMNGD R+L DVKPR
Sbjct: 719 ENLSYDASRASES--PTVNPISAAAAAAATSSGLADRGASVVAVAGMNGDARNLGDVKPR 776
Query: 718 ITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL 777
I EE NDKSK+WKLTE++EP+QCRSLRLPENLR TKISRLI+TNSGNAILALASNAIHLL
Sbjct: 777 IAEELNDKSKIWKLTEINEPSQCRSLRLPENLRVTKISRLIYTNSGNAILALASNAIHLL 836
Query: 778 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS 837
WKWQR++RN+SGKATA V PQLWQP SGI+MTND+TDSNPEEAV CFALSKNDSYVMSAS
Sbjct: 837 WKWQRSDRNASGKATAGVPPQLWQPSSGILMTNDITDSNPEEAVACFALSKNDSYVMSAS 896
Query: 838 GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 897
GGKISLFNMMTFKTM TFMPPPPAATFLAFHPQDNNIIAIGMDDS+IQIYNVRVDEVKSK
Sbjct: 897 GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSK 956
Query: 898 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTR 957
LKGHSKRITGLAFSH L+VLVSSGAD+QLCVW+SDGWEKQK RFLQ+PTGRT TAQSDTR
Sbjct: 957 LKGHSKRITGLAFSHVLSVLVSSGADAQLCVWNSDGWEKQKTRFLQVPTGRTTTAQSDTR 1016
Query: 958 VQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA 1017
VQFHQDQIHFLVVHETQLAIFETTKLECVKQW+PRESSAPI+HA FSCDSQLVYA FLDA
Sbjct: 1017 VQFHQDQIHFLVVHETQLAIFETTKLECVKQWLPRESSAPISHAVFSCDSQLVYASFLDA 1076
Query: 1018 TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1077
TVCVFSAANL+LRCRINPS+Y P V SSNVHPLVIAAHPQEPN+FALGLSDGGVHVFEP
Sbjct: 1077 TVCVFSAANLRLRCRINPSSYPPPNV-SSNVHPLVIAAHPQEPNQFALGLSDGGVHVFEP 1135
Query: 1078 LESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR 1114
LESEGKWGVPPP +NGS SS+ A P VG SGSDQAQR
Sbjct: 1136 LESEGKWGVPPPAENGSASSVAAIPSVGPSGSDQAQR 1172
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356550630|ref|XP_003543688.1| PREDICTED: topless-related protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2024 bits (5243), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 977/1141 (85%), Positives = 1050/1141 (92%), Gaps = 36/1141 (3%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VE+YLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDKHDR+KAVEILVKDLKVF+TFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
WQHQLCKNPRPNPDIKTLFVDH+CGQPNGARAPSPANNPLLGSLPKAG FPPLGAHGPFQ
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQ 240
Query: 241 PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGD 300
PTPAPVPTPLAGWMSNP TV HPAVSGGAIGLG+PSIPAA LKHPRTPPTNPSVDYPSGD
Sbjct: 241 PTPAPVPTPLAGWMSNPTTVAHPAVSGGAIGLGAPSIPAA-LKHPRTPPTNPSVDYPSGD 299
Query: 301 SDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSS 360
SDH+SKRTRPIG+SDE+NLPVNVL +F GH H QAF+ P+DLPKT R+LNQGSS
Sbjct: 300 SDHVSKRTRPIGMSDEVNLPVNVLSATFPGHGHG----QAFNAPDDLPKTAMRSLNQGSS 355
Query: 361 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 420
PMSMDFHPVQQTLLLVGTNVGDI LWEVGSRERL++RNFKVWDL ACSMP QAALVKDPG
Sbjct: 356 PMSMDFHPVQQTLLLVGTNVGDIALWEVGSRERLLMRNFKVWDLSACSMPFQAALVKDPG 415
Query: 421 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 480
VSVNRVIWSPDG+LFGVAYSRHIVQIYSYHGGD+V QHLEIDAHVGGVND+AFSHPNKQL
Sbjct: 416 VSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGDDVGQHLEIDAHVGGVNDLAFSHPNKQL 475
Query: 481 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 540
CVITCGDDKTIKVWDA GAKQY FEGHEAPVYS+CPH+KENIQFIFSTALDGKIKAWLY
Sbjct: 476 CVITCGDDKTIKVWDAATGAKQYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLY 535
Query: 541 DNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQGFRK 574
DNLGSRVDYEAPGRWCTTMAYSADGTR TYQGFRK
Sbjct: 536 DNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKEGESSIVEWNESEGAVKRTYQGFRK 595
Query: 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA 634
RSLGVVQFDTTKNR+LAAGDDFSIKFWDMD++QLLT++DADGGLPASPRIRFNKDG LLA
Sbjct: 596 RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTVDADGGLPASPRIRFNKDGALLA 655
Query: 635 VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN-SKPTISPISAAAAAAATSAGLAD 693
VS N+NGIKILA +DGIRLLRT EN YD SRTSE +KPTI+PISAAAAAA ++A LA+
Sbjct: 656 VSANENGIKILANADGIRLLRTLENSLYDTSRTSEAMTKPTINPISAAAAAATSAA-LAE 714
Query: 694 RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK 753
RA+S+V+I MNGD R+L DVKPRI+EESNDKSK+WKLTE++EP+QCRSL+LPEN+R K
Sbjct: 715 RASSVVAITAMNGDARNLGDVKPRISEESNDKSKIWKLTEINEPSQCRSLKLPENVRVNK 774
Query: 754 ISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 813
ISRLI+TNSGNAILALASNAIHLLWKWQR +RNS+GKATASV PQLWQP SGI+MTND+T
Sbjct: 775 ISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSTGKATASVQPQLWQPSSGILMTNDIT 834
Query: 814 DSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN 873
D+N E+AVPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAATFLAFHPQDNN
Sbjct: 835 DNNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNN 894
Query: 874 IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 933
IIAIGMDDSSIQIYNVRVDEVKSKLKGH+KRITGLAFSH LNVLVSSGAD+Q+CVW++DG
Sbjct: 895 IIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWNTDG 954
Query: 934 WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRE 993
WEKQK+RFLQ+P GRTP AQ+DTRVQFHQDQI FLVVHETQLAI+E TKLEC+KQW PR+
Sbjct: 955 WEKQKSRFLQLPAGRTPPAQADTRVQFHQDQIRFLVVHETQLAIYEATKLECLKQWFPRD 1014
Query: 994 SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVI 1053
SSAPI+HATFSCDSQL+YA FLDATVCV S +NL+LRCRINPSAYL A V SSNV PLVI
Sbjct: 1015 SSAPISHATFSCDSQLIYASFLDATVCVLSVSNLRLRCRINPSAYLSASV-SSNVQPLVI 1073
Query: 1054 AAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQ 1113
AAHPQEPN+FA+GLSDGGVHVFEP ESEGKWGVPPP++NGSTS+M AT G+ SD+AQ
Sbjct: 1074 AAHPQEPNQFAVGLSDGGVHVFEPHESEGKWGVPPPIENGSTSNMAATSV--GASSDEAQ 1131
Query: 1114 R 1114
R
Sbjct: 1132 R 1132
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225463556|ref|XP_002268265.1| PREDICTED: protein TOPLESS [Vitis vinifera] gi|297743564|emb|CBI36431.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2023 bits (5240), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 983/1145 (85%), Positives = 1053/1145 (91%), Gaps = 38/1145 (3%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVH+GNWD+VEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHSGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDKHDR+KAVEILVKDLKVF+TFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFP+LKNSRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPHLKNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAG FPPLGAHGPFQ
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQ 240
Query: 241 PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGD 300
PTPAPVPTPL WMSNP TVTHPAVSGG IGLG+PSIPAA LKHPRTPPTNPSVDYPSGD
Sbjct: 241 PTPAPVPTPL--WMSNPSTVTHPAVSGGPIGLGAPSIPAA-LKHPRTPPTNPSVDYPSGD 297
Query: 301 SDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSS 360
S+H++KR RP+GISDE+NLPVNVLPV+F GH HS QAF+ P+DLPKT+ R L QGSS
Sbjct: 298 SEHVAKRGRPMGISDEVNLPVNVLPVTFPGHGHS----QAFNAPDDLPKTLVRNLTQGSS 353
Query: 361 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 420
PMSMDFHPVQQTLLLVGTNVGDIGLWEVGS+++LV RNFKVWD+GACS+PLQAAL KDPG
Sbjct: 354 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSKQKLVSRNFKVWDIGACSVPLQAALAKDPG 413
Query: 421 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 480
VSVNR+IWSPDGSLFGVAYSRHIVQIYSYHGGD+VRQHLEIDAH GGVND+AFSHPNKQL
Sbjct: 414 VSVNRIIWSPDGSLFGVAYSRHIVQIYSYHGGDDVRQHLEIDAHAGGVNDLAFSHPNKQL 473
Query: 481 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 540
CVITCGDDKTIKVWDATNG KQY FEGHE VYSVCPH+KENIQFIFSTALDGKIKAWLY
Sbjct: 474 CVITCGDDKTIKVWDATNGTKQYTFEGHEDAVYSVCPHYKENIQFIFSTALDGKIKAWLY 533
Query: 541 DNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQGFRK 574
DNLGSRVDY+APGRWCTTMAYSADGTR TYQGFRK
Sbjct: 534 DNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGDSYIVEWNESEGAVKRTYQGFRK 593
Query: 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP---ASPRIRFNKDGC 631
RSLGVVQFDTTKNRFLAAGDDFSIKFWDMD++QLLT +DA+GGLP ASPRIRFNKDG
Sbjct: 594 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNIQLLTILDAEGGLPGLPASPRIRFNKDGT 653
Query: 632 LLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN-SKPTISPISAAAAAAATSA- 689
LLAVS N+N IKILA SDG+RLLRTF+NL+YDASR SE+ +KP I+ ISAAAAAAA ++
Sbjct: 654 LLAVSANENSIKILANSDGLRLLRTFDNLSYDASRASESVTKPAINSISAAAAAAAATSA 713
Query: 690 GLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL 749
GLADR AS+V+I GMNGD R++ DVKPR+ EE+NDKSK+WKLTE++E +QCRSLRL ENL
Sbjct: 714 GLADRGASVVAIAGMNGDARNMGDVKPRLAEETNDKSKIWKLTEINETSQCRSLRLQENL 773
Query: 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 809
R TKISRLI+TNSGNAILALASNAIH LWKWQR +RNSSGKATA+V+PQLWQP SGI+MT
Sbjct: 774 RITKISRLIYTNSGNAILALASNAIHFLWKWQRNDRNSSGKATATVSPQLWQPTSGILMT 833
Query: 810 NDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHP 869
NDV D+NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAATFLAFHP
Sbjct: 834 NDVADTNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHP 893
Query: 870 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 929
QDNNIIAIGMDDS+IQIYNVRVDEVKSKLKGHSKRITGLAFSH LNVLVSSGAD+QLCVW
Sbjct: 894 QDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSHVLNVLVSSGADAQLCVW 953
Query: 930 SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQW 989
SSDGWEKQK+RFLQ+P GRT T QSDTRVQFHQDQ HFLVVHETQLAI+E TKL+CVKQW
Sbjct: 954 SSDGWEKQKSRFLQVPAGRTSTGQSDTRVQFHQDQTHFLVVHETQLAIYEATKLDCVKQW 1013
Query: 990 VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVH 1049
V RE++API+HATFSCDS LVYA FLDATVCVFSAANL+LRCRINP+AYLPA VS+SNVH
Sbjct: 1014 VQREAAAPISHATFSCDSLLVYASFLDATVCVFSAANLRLRCRINPTAYLPASVSNSNVH 1073
Query: 1050 PLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGS 1109
PLVIAAHPQEPN+FALGLSDGGV VFEPLESEGKWGVPPPV+NGS SS+PATP VG SGS
Sbjct: 1074 PLVIAAHPQEPNQFALGLSDGGVCVFEPLESEGKWGVPPPVENGSASSVPATPSVGPSGS 1133
Query: 1110 DQAQR 1114
DQ QR
Sbjct: 1134 DQPQR 1138
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449517721|ref|XP_004165893.1| PREDICTED: LOW QUALITY PROTEIN: protein TOPLESS-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2016 bits (5222), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 972/1144 (84%), Positives = 1053/1144 (92%), Gaps = 35/1144 (3%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDKHDR+KAV+ILVKDLKVF TFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVDILVKDLKVFXTFNEELFKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFP+LKNSRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPHLKNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
WQHQLCKNPRPNPDIKTLFVDH+CGQPNGARAPSPANNPLLGSLPK G FPPLGAHGPFQ
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKPGGFPPLGAHGPFQ 240
Query: 241 PTPAPVPTPLAGWMSNPPTVTHPAVSGG-AIGLGSPSIPAAALKHPRTPPTNPSVDYPSG 299
PT APVP PLAGWMSNP VTHPAVSGG AIGLG+PSIPAA LKHPRTPPTNPSV+YPS
Sbjct: 241 PTAAPVPAPLAGWMSNPSAVTHPAVSGGGAIGLGAPSIPAA-LKHPRTPPTNPSVEYPSA 299
Query: 300 DSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGS 359
DSDH+SKR +P+G+SDE+NLPVNVLPVSFTGH H+ Q F+ P+DLPKTV RTLNQGS
Sbjct: 300 DSDHVSKRPKPMGMSDEVNLPVNVLPVSFTGHGHA----QTFNAPDDLPKTVMRTLNQGS 355
Query: 360 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP 419
+PMSMDFHP+QQTLLLVGTNVG+IGLWEVGSRERLV +NFKVWDL ACSMPLQAALVK+P
Sbjct: 356 NPMSMDFHPIQQTLLLVGTNVGEIGLWEVGSRERLVSKNFKVWDLNACSMPLQAALVKEP 415
Query: 420 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ 479
VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD++RQHLEIDAHVGGVND+AFS+PNKQ
Sbjct: 416 DVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDDMRQHLEIDAHVGGVNDLAFSNPNKQ 475
Query: 480 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 539
LCVITCGDDKTIKVWDA NGA+QYIFEGHEAPV+SVCPH+KENIQFIFSTALDGKIKAWL
Sbjct: 476 LCVITCGDDKTIKVWDAGNGARQYIFEGHEAPVFSVCPHYKENIQFIFSTALDGKIKAWL 535
Query: 540 YDNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQGFR 573
YDN+GSRVDY+APGRWCTTMAYSADGTR TYQGFR
Sbjct: 536 YDNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGDSYIVEWNESEGAVKRTYQGFR 595
Query: 574 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL 633
KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD+VQLLT++DADGGLPASPRIRFNKDG LL
Sbjct: 596 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADGGLPASPRIRFNKDGTLL 655
Query: 634 AVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE-NSKPTISPISAAAAAAATSAGLA 692
AVS N+NGIKILA DGIRLLRTFENL+YDA+RTSE +KPTI+PISAAAA AA +A +
Sbjct: 656 AVSGNENGIKILANVDGIRLLRTFENLSYDAARTSEAGTKPTINPISAAAAVAAAAAAGS 715
Query: 693 --DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLR 750
DR AS+V++ G+ GD RSL DVKPRI E+SNDKSK+WKLTE++EP+QCRSLRLPEN+R
Sbjct: 716 AADRGASVVTMSGVAGDSRSLGDVKPRIPEDSNDKSKIWKLTEINEPSQCRSLRLPENVR 775
Query: 751 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 810
KISRLI+TNSG+AILALASNAIHLLWKW R+ERNS+GKATA+V PQLWQP SGI+MTN
Sbjct: 776 VNKISRLIYTNSGSAILALASNAIHLLWKWTRSERNSTGKATANVLPQLWQPSSGILMTN 835
Query: 811 DVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ 870
DV D++ EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAATFLAFHPQ
Sbjct: 836 DVADTSSEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQ 895
Query: 871 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
DNNIIAIGMDDS+IQIYNVRVDEVKSKLKGHSKRITGLAFSH LNVLVSSGAD+QLCVWS
Sbjct: 896 DNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSHLLNVLVSSGADAQLCVWS 955
Query: 931 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 990
SD WEKQK RFLQ+P+GR P++QSDTRVQFHQDQ+HFLVVHETQ+AI+ETTKLECVKQW
Sbjct: 956 SDVWEKQKTRFLQLPSGRPPSSQSDTRVQFHQDQVHFLVVHETQIAIYETTKLECVKQWT 1015
Query: 991 PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHP 1050
PRES API+HATFSCDSQ++YA FLDATVCVF+ A+L+LRCRI+PSAYLPA VS+++V P
Sbjct: 1016 PRESGAPISHATFSCDSQMIYASFLDATVCVFTVASLRLRCRISPSAYLPASVSNASVQP 1075
Query: 1051 LVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSD 1110
LVIAAHPQE N+FALGLSDGGVHVFEPLESEGKWGVPPPV+NGS SS+P TP VG SGS+
Sbjct: 1076 LVIAAHPQEANQFALGLSDGGVHVFEPLESEGKWGVPPPVENGSASSVPTTPSVGASGSE 1135
Query: 1111 QAQR 1114
QA R
Sbjct: 1136 QAPR 1139
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449468952|ref|XP_004152185.1| PREDICTED: protein TOPLESS-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2016 bits (5222), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 972/1144 (84%), Positives = 1054/1144 (92%), Gaps = 35/1144 (3%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDKHDR+KAV+ILVKDLKVFSTFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFP+LKNSRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPHLKNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
WQHQLCKNPRPNPDIKTLFVDH+CGQPNGARAPSPANNPLLGSLPK G FPPLGAHGPFQ
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKPGGFPPLGAHGPFQ 240
Query: 241 PTPAPVPTPLAGWMSNPPTVTHPAVSGG-AIGLGSPSIPAAALKHPRTPPTNPSVDYPSG 299
PT APVP PLAGWMSNP VTHPAVSGG AIGLG+PSIPAA LKHPRTPPTNPSV+YPS
Sbjct: 241 PTAAPVPAPLAGWMSNPSAVTHPAVSGGGAIGLGAPSIPAA-LKHPRTPPTNPSVEYPSA 299
Query: 300 DSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGS 359
DSDH+SKR +P+G+SDE+NLPVNVLPVSFTGH H+ Q F+ P+DLPKTV RTLNQGS
Sbjct: 300 DSDHVSKRPKPMGMSDEVNLPVNVLPVSFTGHGHA----QNFNAPDDLPKTVMRTLNQGS 355
Query: 360 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP 419
+PMSMDFHP+QQTLLLVGT+VG+IGLWEVGSRERLV +NFKVWDL ACSMPLQAALVK+P
Sbjct: 356 NPMSMDFHPIQQTLLLVGTDVGEIGLWEVGSRERLVSKNFKVWDLNACSMPLQAALVKEP 415
Query: 420 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ 479
VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD++RQHLEIDAHVGGVND+AFS+PNKQ
Sbjct: 416 DVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDDMRQHLEIDAHVGGVNDLAFSNPNKQ 475
Query: 480 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 539
LCVITCGDDKTIKVWDA NGA+QYIFEGHEAPV+SVCPH+KENIQFIFSTALDGKIKAWL
Sbjct: 476 LCVITCGDDKTIKVWDAGNGARQYIFEGHEAPVFSVCPHYKENIQFIFSTALDGKIKAWL 535
Query: 540 YDNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQGFR 573
YDN+GSRVDY+APGRWCTTMAYSADGTR TYQGFR
Sbjct: 536 YDNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGDSYIVEWNESEGAVKRTYQGFR 595
Query: 574 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL 633
KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD+VQLLT++DADGGLPASPRIRFNKDG LL
Sbjct: 596 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADGGLPASPRIRFNKDGTLL 655
Query: 634 AVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE-NSKPTISPISAAAAAAATSAGLA 692
AVS N+NGIKILA DGIRLLRTFENL+YDA+RTSE +KPTI+PISAAAA AA +A +
Sbjct: 656 AVSGNENGIKILANVDGIRLLRTFENLSYDAARTSEAGTKPTINPISAAAAVAAAAAAGS 715
Query: 693 --DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLR 750
DR AS+V++ G+ GD RSL DVKPRI E+SNDKSK+WKLTE++EP+QCRSLRLPEN+R
Sbjct: 716 AADRGASVVTMSGVAGDSRSLGDVKPRIPEDSNDKSKIWKLTEINEPSQCRSLRLPENVR 775
Query: 751 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 810
KISRLI+TNSG+AILALASNAIHLLWKW R+ERNS+GKATA+V PQLWQP SGI+MTN
Sbjct: 776 VNKISRLIYTNSGSAILALASNAIHLLWKWTRSERNSTGKATANVLPQLWQPSSGILMTN 835
Query: 811 DVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ 870
DV D++ EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAATFLAFHPQ
Sbjct: 836 DVADTSSEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQ 895
Query: 871 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
DNNIIAIGMDDS+IQIYNVRVDEVKSKLKGHSKRITGLAFSH LNVLVSSGAD+QLCVWS
Sbjct: 896 DNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSHLLNVLVSSGADAQLCVWS 955
Query: 931 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 990
SD WEKQK RFLQ+P+GR P++QSDTRVQFHQDQ+HFLVVHETQ+AI+ETTKLECVKQW
Sbjct: 956 SDVWEKQKTRFLQLPSGRPPSSQSDTRVQFHQDQVHFLVVHETQIAIYETTKLECVKQWT 1015
Query: 991 PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHP 1050
PRES API+HATFSCDSQ++YA FLDATVCVF+ A+L+LRCRI+PSAYLPA VS+++V P
Sbjct: 1016 PRESGAPISHATFSCDSQMIYASFLDATVCVFTVASLRLRCRISPSAYLPASVSNASVQP 1075
Query: 1051 LVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSD 1110
LVIAAHPQE N+FALGLSDGGVHVFEPLESEGKWGVPPPV+NGS SS+P TP VG SGS+
Sbjct: 1076 LVIAAHPQEANQFALGLSDGGVHVFEPLESEGKWGVPPPVENGSASSVPTTPSVGASGSE 1135
Query: 1111 QAQR 1114
QA R
Sbjct: 1136 QAPR 1139
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356526242|ref|XP_003531727.1| PREDICTED: protein TOPLESS-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2014 bits (5219), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 980/1142 (85%), Positives = 1054/1142 (92%), Gaps = 37/1142 (3%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDKHDR+KAVEILVKDLKVF+TFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
WQHQLCKNPRPNPDIKTLFVDH+CGQPNGARAPSPANNPLLG+LPKAG FPPLGAHGPFQ
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGALPKAGGFPPLGAHGPFQ 240
Query: 241 PTPAPVPTPLAGWMSNPPTVTHPAVSGG-AIGLGSPSIPAAALKHPRTPPTNPSVDYPSG 299
PTPAPVPTPLAGWMSNP TV H AVSGG AIGLG+PS+PAA LKHPRTPPTNPSVDYPSG
Sbjct: 241 PTPAPVPTPLAGWMSNPTTVAHAAVSGGGAIGLGAPSMPAA-LKHPRTPPTNPSVDYPSG 299
Query: 300 DSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGS 359
DSDH++KRTRP+GISDE+NLPVNVL +F GH HSQAF+ P+D+PKTV RTLNQGS
Sbjct: 300 DSDHVAKRTRPMGISDEVNLPVNVLSATFPGHGQ---HSQAFNAPDDIPKTVVRTLNQGS 356
Query: 360 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP 419
SPMSMDFHP+QQ+LLLVGT+VGDI LWEVGSRERLV RNFKVWDL ACSMP QAALVKDP
Sbjct: 357 SPMSMDFHPMQQSLLLVGTHVGDIALWEVGSRERLVSRNFKVWDLSACSMPFQAALVKDP 416
Query: 420 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ 479
GVSVNRVIWSPDG+LFGVAYSRHIVQIYSYHGGDE+RQHLEIDAHVGGVND+AFSHPNKQ
Sbjct: 417 GVSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGDEIRQHLEIDAHVGGVNDLAFSHPNKQ 476
Query: 480 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 539
LCVITCGDDKTIKVWDA +GAKQY FEGHEAPVYSVCPH+KENIQFIFSTALDGKIKAWL
Sbjct: 477 LCVITCGDDKTIKVWDAASGAKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWL 536
Query: 540 YDNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQGFR 573
YDNLGSRVDYEAPGRWCTTMAYSADGTR TYQGFR
Sbjct: 537 YDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFR 596
Query: 574 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL 633
KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD+VQLLT++DADGGLPASPRIRFNKDG LL
Sbjct: 597 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADGGLPASPRIRFNKDGTLL 656
Query: 634 AVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN-SKPTISPISAAAAAAATSAGLA 692
AVS N+NGIKILA DGIRLLRT EN Y+ASR SE +KPTI+PISAAAAAA ++A LA
Sbjct: 657 AVSANENGIKILANGDGIRLLRTLENSLYEASRASEALTKPTINPISAAAAAATSAA-LA 715
Query: 693 DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 752
+RA+S+V+I GMNGD R+L DVKPRI+EESNDKSK+WKLTE++E +QCRSL+LPEN+R T
Sbjct: 716 ERASSVVAIAGMNGDTRNLGDVKPRISEESNDKSKIWKLTEINEQSQCRSLKLPENVRVT 775
Query: 753 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 812
KISRLI+TNSGNAILALASNAIHLLWKWQR ERNSSGKATA++ PQLWQP SGI+MTND+
Sbjct: 776 KISRLIYTNSGNAILALASNAIHLLWKWQRNERNSSGKATATLQPQLWQPSSGILMTNDI 835
Query: 813 TDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDN 872
DSNPE+AVPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAATFLAFHPQDN
Sbjct: 836 ADSNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDN 895
Query: 873 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 932
NIIAIGMDDSSIQIYNVRVDEVKSKLKGH+KRITGLAFSH LNVLVSSGAD+Q+CVW++D
Sbjct: 896 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWNTD 955
Query: 933 GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPR 992
GWEKQK+RFLQ+P GRTP AQSDTRVQFHQDQI FLVVHETQLAI+E TKLE +KQW PR
Sbjct: 956 GWEKQKSRFLQLPPGRTPPAQSDTRVQFHQDQIQFLVVHETQLAIYEATKLEGLKQWFPR 1015
Query: 993 ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLV 1052
+SSAPI++ATFSCDSQLV+A FLDAT+CVFSA+NL+LRCRINPS+YLPA V SSN+ PLV
Sbjct: 1016 DSSAPISYATFSCDSQLVFASFLDATICVFSASNLRLRCRINPSSYLPASV-SSNIQPLV 1074
Query: 1053 IAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQA 1112
IAAHPQEPN+FALGLSDGGVHVFEPLESEGKWGVPPP++NGS S++ AT VG SDQA
Sbjct: 1075 IAAHPQEPNQFALGLSDGGVHVFEPLESEGKWGVPPPIENGSASNVAAT-SVG--PSDQA 1131
Query: 1113 QR 1114
QR
Sbjct: 1132 QR 1133
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255553317|ref|XP_002517701.1| WD-repeat protein, putative [Ricinus communis] gi|223543333|gb|EEF44865.1| WD-repeat protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2002 bits (5186), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 974/1142 (85%), Positives = 1034/1142 (90%), Gaps = 55/1142 (4%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVH+GNWD+VEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHSGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDKHDR+KAV+ILVKDLKVF+TFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVDILVKDLKVFATFNEELFKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
LENFRENEQLSKYGDTKSAR+IML FPNLKNSRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIML------------------FPNLKNSRLRTLINQSLN 162
Query: 181 WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
WQHQLCKNPRPNPDIKTLFVDH+CGQPNGARAPSPANNPLLGSLPKAG FPPLGAHGPFQ
Sbjct: 163 WQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQ 222
Query: 241 PTPAPVPTPLAGWMSNPPTVTHPAVSGG-AIGLGSPSIPAAALKHPRTPPTNPSVDYPSG 299
PTPAPVP PLAGWMSNP VTHPAVSGG AIGLG+PSIPAA LKHPRTPPTNPSVDYPSG
Sbjct: 223 PTPAPVPAPLAGWMSNPSAVTHPAVSGGGAIGLGAPSIPAA-LKHPRTPPTNPSVDYPSG 281
Query: 300 DSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGS 359
DSDH++KRTRP+GISDE+NLPVNVLPVSF GH H Q F+ P+DLPKTV+RTLNQGS
Sbjct: 282 DSDHVAKRTRPMGISDEVNLPVNVLPVSFPGHGHG----QNFNAPDDLPKTVSRTLNQGS 337
Query: 360 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP 419
SPMSMDFHP++QTLLLVGTNVGD+ LWEVGSRERL+LRNFKVWD+ CSMPLQAALVKDP
Sbjct: 338 SPMSMDFHPLEQTLLLVGTNVGDVALWEVGSRERLMLRNFKVWDISTCSMPLQAALVKDP 397
Query: 420 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ 479
GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYH GD+VRQHLEIDAHVGGVND+AFS PNKQ
Sbjct: 398 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHRGDDVRQHLEIDAHVGGVNDLAFSTPNKQ 457
Query: 480 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 539
LCVITCGDDKTIKVWDA G +QY FEGHEAPVYSVCPH+KENIQFIFSTALDGKIKAWL
Sbjct: 458 LCVITCGDDKTIKVWDAATGTRQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWL 517
Query: 540 YDNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQGFR 573
YDNLGSRVDYEAPGRWCTTMAYSADGTR +YQGFR
Sbjct: 518 YDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESHIVEWNESEGNVKRSYQGFR 577
Query: 574 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL 633
KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD++QLLTSIDADGGLPASPRIRFNKDG LL
Sbjct: 578 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNLQLLTSIDADGGLPASPRIRFNKDGSLL 637
Query: 634 AVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN-SKPTISPISAAAAAAATSAGLA 692
AVS N+NGIKILA SDG RLLRTFENL+YDASR SE +KP I+PISAAAA +A A
Sbjct: 638 AVSANENGIKILANSDGHRLLRTFENLSYDASRASEAVTKPIINPISAAAATSAGLA--- 694
Query: 693 DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 752
DR AS+V+IPGMNGD R++ DVKPRITEESNDKSK+WKLTE++EP QCRSLRLP+NLR
Sbjct: 695 DRTASVVTIPGMNGDARNMGDVKPRITEESNDKSKIWKLTEINEPTQCRSLRLPDNLRVN 754
Query: 753 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 812
KISRLI+TNSGNAILALASNAIHLLWKWQR+ERNS+GKATA+V+PQLWQP SGI+MTND+
Sbjct: 755 KISRLIYTNSGNAILALASNAIHLLWKWQRSERNSTGKATANVSPQLWQPSSGILMTNDI 814
Query: 813 TDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDN 872
TD+NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAATFLAFHPQDN
Sbjct: 815 TDTNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDN 874
Query: 873 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 932
NIIAIGMDDS+IQIYNVRVDEVKSKLKGHSKRITGLAFSH LNVLVSSGAD+QLCVW+SD
Sbjct: 875 NIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSHVLNVLVSSGADAQLCVWNSD 934
Query: 933 GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPR 992
GWEKQK RFLQ+P GRT T QSDTRVQFHQDQI FLVVHETQLAI+E TKLEC KQWV R
Sbjct: 935 GWEKQKTRFLQVPPGRTTTGQSDTRVQFHQDQIQFLVVHETQLAIYEATKLECTKQWVTR 994
Query: 993 ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLV 1052
ESSAPI+HATFSCDSQLVYA FLDATVCVFSA NL+LRCRINPS+YL A VSSS +HPLV
Sbjct: 995 ESSAPISHATFSCDSQLVYASFLDATVCVFSAQNLRLRCRINPSSYLSANVSSS-LHPLV 1053
Query: 1053 IAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQA 1112
IAAHPQEPN+FALGLSDGGVHVFEPLESEGKWGVPPP +NGS SS+PATP VG SGSDQA
Sbjct: 1054 IAAHPQEPNQFALGLSDGGVHVFEPLESEGKWGVPPPAENGSASSVPATPSVGPSGSDQA 1113
Query: 1113 QR 1114
QR
Sbjct: 1114 QR 1115
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357458875|ref|XP_003599718.1| WD repeat-containing protein, putative [Medicago truncatula] gi|357468121|ref|XP_003604345.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355488766|gb|AES69969.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355505400|gb|AES86542.1| WD repeat-containing protein, putative [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1982 bits (5136), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 965/1145 (84%), Positives = 1038/1145 (90%), Gaps = 38/1145 (3%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDKHDR+KAVEILVKDLKVF+TFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
WQHQLCKNPRPNPDIKTLFVDH+CGQPNGARAPSPAN+PLLGSLPKAG FPPLGAHGPFQ
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANSPLLGSLPKAGGFPPLGAHGPFQ 240
Query: 241 PTPAPVPTPLAGWMSNPPTVTHPAVSG-GAIGLGSPSIPAAALKHPRTPPTNPSVDYPSG 299
P PA VPT LAGWMSNP TV H AVSG GAIGLG+PS+P A LKHPRTPP NPSVDYPSG
Sbjct: 241 PNPAAVPTQLAGWMSNPTTVAHAAVSGAGAIGLGAPSMPGA-LKHPRTPPINPSVDYPSG 299
Query: 300 DSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLP--KTVTRTLNQ 357
DSDH++KRTRP+GI+DE+NLPVNVL +F GH HS QAF+ P+DLP KTVTRTLNQ
Sbjct: 300 DSDHVAKRTRPMGITDEVNLPVNVLSGTFPGHGHS----QAFNAPDDLPLPKTVTRTLNQ 355
Query: 358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVK 417
GSSPMSMDFHPVQQ+LLLVGTNVG I LWEVGSRE+LV RNFKVWDL ACSMP QAALVK
Sbjct: 356 GSSPMSMDFHPVQQSLLLVGTNVGGIALWEVGSREKLVSRNFKVWDLSACSMPFQAALVK 415
Query: 418 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPN 477
DP VSVNRVIWSPDG+LFGVAYSRHIVQIYSYH GD+VRQHLEIDAHVGGVND+AFSHPN
Sbjct: 416 DPSVSVNRVIWSPDGALFGVAYSRHIVQIYSYHTGDDVRQHLEIDAHVGGVNDLAFSHPN 475
Query: 478 KQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 537
KQLCVITCGDDKTIKVWDA +GAKQY FEGHEAPVYSVCPH+KENIQFIFSTALDGKIKA
Sbjct: 476 KQLCVITCGDDKTIKVWDAVSGAKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKA 535
Query: 538 WLYDNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQG 571
WLYDNLGSRVDY+APGRWCTTMAYSADGTR TYQG
Sbjct: 536 WLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQG 595
Query: 572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC 631
FRKRS+GVVQFDTTKNRFLAAGDDFSIKFWDMD++QLLT++DADGGLPASPRIRFNKDG
Sbjct: 596 FRKRSMGVVQFDTTKNRFLAAGDDFSIKFWDMDNIQLLTTVDADGGLPASPRIRFNKDGT 655
Query: 632 LLAVSTNDNGIKILATSDGIRLLRTFENLA-YDASRTSENSKPTISPISAAAAAAATSAG 690
LLAVS NDNGIKI+A +DGIRLLRT EN + YDASR SE +KPTI+ S ++AAAATSA
Sbjct: 656 LLAVSANDNGIKIVANADGIRLLRTLENNSMYDASRASEMAKPTIN--SMSSAAAATSAA 713
Query: 691 LADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLR 750
LA+RA+S+ +I GMNGD RS+ DVKPRI+EE+NDKSK+WKLTE++EP+ CRSL+LPEN+R
Sbjct: 714 LAERASSVAAIAGMNGDTRSMGDVKPRISEEANDKSKIWKLTEINEPSHCRSLKLPENVR 773
Query: 751 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 810
KISRLI+TNSGNAILALASNAIHLLWKW R ERNSSGKA ASV QLWQP SGI+MTN
Sbjct: 774 VNKISRLIYTNSGNAILALASNAIHLLWKWPRNERNSSGKANASVPAQLWQPSSGILMTN 833
Query: 811 DVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ 870
D+ DSNPE++VPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAATFLAFHPQ
Sbjct: 834 DIADSNPEDSVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQ 893
Query: 871 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH+KRITGLAFSH LNVLVSSGAD+Q+CVW+
Sbjct: 894 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWN 953
Query: 931 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 990
+DGWEKQK RFLQ+P GRTP+AQSDTRVQFHQDQI FLVVHETQLAIFE TKLEC+KQW
Sbjct: 954 TDGWEKQKTRFLQLPPGRTPSAQSDTRVQFHQDQIQFLVVHETQLAIFEATKLECLKQWA 1013
Query: 991 PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSS-SNVH 1049
PR+SSAPI+HATFSCDSQL+YA FLDATVCVF+A+NL+LRCRINP AYLPA VSS SNV
Sbjct: 1014 PRDSSAPISHATFSCDSQLIYASFLDATVCVFNASNLRLRCRINPPAYLPASVSSNSNVQ 1073
Query: 1050 PLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGS 1109
PLVIAAHP E N+FA+GLSDGGVHVFEPLESEGKWGVPPP +NGS+S+ A G S
Sbjct: 1074 PLVIAAHPHEANQFAVGLSDGGVHVFEPLESEGKWGVPPPNENGSSSNNVAVATSVGLSS 1133
Query: 1110 DQAQR 1114
DQAQR
Sbjct: 1134 DQAQR 1138
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356554802|ref|XP_003545731.1| PREDICTED: topless-related protein 1-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1977 bits (5123), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 961/1141 (84%), Positives = 1036/1141 (90%), Gaps = 32/1141 (2%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VE+YLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFE+ KQKYLEALDKHDR+KAVEILVKDLKVF+TFN+ELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEVMKQKYLEALDKHDRSKAVEILVKDLKVFATFNDELFKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
LENFRENEQLSKY DTKSAR+IMLVELKKLIEANPLF DKLQFPNLK+SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYCDTKSARAIMLVELKKLIEANPLFHDKLQFPNLKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
WQHQLCKNPRPNPDIKTLFVDH+CGQ NGA APSPANN LLGSLPKAG FPPLGAHGPFQ
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCGQLNGAPAPSPANNLLLGSLPKAGGFPPLGAHGPFQ 240
Query: 241 PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGD 300
P+PAPVPTPLAGWMSNP TV HP VSGGAIGLG PSIPAA LKHPRTPPT PSVDYPSGD
Sbjct: 241 PSPAPVPTPLAGWMSNPTTVAHPEVSGGAIGLGVPSIPAA-LKHPRTPPTYPSVDYPSGD 299
Query: 301 SDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSS 360
SDH+SKRTRP+G+SDE+NLPVNVL +F GH H H H QAF+ P+DLPKT RTLNQGSS
Sbjct: 300 SDHVSKRTRPMGMSDEVNLPVNVLSATFPGHGHGHGHGQAFNAPDDLPKTAMRTLNQGSS 359
Query: 361 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 420
PMSMDFHPVQQTLLLVGTNVGDI LWEVGSRERL++RNFKVWDL ACSMP QAALVKDPG
Sbjct: 360 PMSMDFHPVQQTLLLVGTNVGDIALWEVGSRERLLMRNFKVWDLSACSMPFQAALVKDPG 419
Query: 421 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 480
VSV RVIWSPDG+LFGVAYSRHIVQIYSYH GD+V+QHLEIDAHVGGVND+AFSHPNKQL
Sbjct: 420 VSVYRVIWSPDGALFGVAYSRHIVQIYSYHSGDDVQQHLEIDAHVGGVNDLAFSHPNKQL 479
Query: 481 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 540
CVITCGDDKTIKVWDA GAKQY FEGHEAPVYSVCPH+KENIQFIFSTALDGKIKAWLY
Sbjct: 480 CVITCGDDKTIKVWDAATGAKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLY 539
Query: 541 DNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQGFRK 574
DNLGSRVDYEAPGRWCTTMAYSADGTR TYQGFRK
Sbjct: 540 DNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDAESSIVEWNESEGAVKRTYQGFRK 599
Query: 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA 634
RSLG VQFDTTKNR+LAAGDDFSIKFWDMD++QLLT++DADGGLP SPRIRFNKDG LLA
Sbjct: 600 RSLGFVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTVDADGGLPGSPRIRFNKDGALLA 659
Query: 635 VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE-NSKPTISPISAAAAAAATSAGLAD 693
VS +NGIKILA +DGIRLLRT EN YD SRTSE +KPTI+PISAAAAAA ++A L +
Sbjct: 660 VSAKENGIKILANADGIRLLRTLENSLYDTSRTSEVMTKPTINPISAAAAAATSAA-LGE 718
Query: 694 RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK 753
RA S+V I MNGD R+L DVKPRI+EESNDKSK+WKLTE++EP+QCRSL+LPEN+R K
Sbjct: 719 RALSVVGINAMNGDARNLGDVKPRISEESNDKSKIWKLTEINEPSQCRSLKLPENVRVNK 778
Query: 754 ISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 813
ISRLI+TNSGNAILALASNAIHLLWKWQR +RNS+ KA+ASV PQLWQP SGI+MTND+T
Sbjct: 779 ISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSTVKASASVQPQLWQPSSGILMTNDIT 838
Query: 814 DSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN 873
DSN E+AVPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAA FLAFHPQDNN
Sbjct: 839 DSNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAANFLAFHPQDNN 898
Query: 874 IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 933
IIAIGMDDSSIQIYNVRVDEVKSKLKGH+KRITGLAFSH LNVLVSSGAD+Q+CVW++DG
Sbjct: 899 IIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWNTDG 958
Query: 934 WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRE 993
WEKQK+RFLQ+P GRTP AQ+DTRVQFHQDQI FLVVHETQLAI+E TKLEC+KQW PR+
Sbjct: 959 WEKQKSRFLQLPAGRTPPAQADTRVQFHQDQIRFLVVHETQLAIYEATKLECLKQWFPRD 1018
Query: 994 SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVI 1053
SSAPI+HATFSCDSQL+YA FLDATVCVFS +NL+L+CRINPSAYL A V SSNV PLVI
Sbjct: 1019 SSAPISHATFSCDSQLIYASFLDATVCVFSVSNLRLQCRINPSAYLSASV-SSNVQPLVI 1077
Query: 1054 AAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQ 1113
AAHPQEPN+FA+GLSDGGVHVFEPLESEGKWGVPPP++NGSTS+M AT G+ SD+AQ
Sbjct: 1078 AAHPQEPNQFAVGLSDGGVHVFEPLESEGKWGVPPPIENGSTSNMAATSV--GASSDEAQ 1135
Query: 1114 R 1114
R
Sbjct: 1136 R 1136
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1114 | ||||||
| TAIR|locus:2198888 | 1120 | TPR1 "TOPLESS-related 1" [Arab | 0.986 | 0.981 | 0.734 | 0.0 | |
| TAIR|locus:2086770 | 1131 | TPR2 "TOPLESS-related 2" [Arab | 0.953 | 0.938 | 0.592 | 0.0 | |
| TAIR|locus:2036204 | 1131 | TPL "TOPLESS" [Arabidopsis tha | 0.508 | 0.500 | 0.854 | 0.0 | |
| TAIR|locus:2040100 | 740 | AT2G25420 "AT2G25420" [Arabido | 0.324 | 0.487 | 0.371 | 1.8e-91 | |
| DICTYBASE|DDB_G0278353 | 530 | smu1 "suppressor of mec-8 and | 0.141 | 0.298 | 0.305 | 4.8e-16 | |
| DICTYBASE|DDB_G0287273 | 335 | wdr5 "WD40 repeat-containing p | 0.142 | 0.474 | 0.282 | 2.6e-12 | |
| TAIR|locus:2159562 | 589 | AT5G08560 "AT5G08560" [Arabido | 0.170 | 0.322 | 0.246 | 1.2e-10 | |
| TAIR|locus:2172432 | 523 | AT5G43920 "AT5G43920" [Arabido | 0.166 | 0.355 | 0.253 | 2.3e-10 | |
| FB|FBgn0036354 | 391 | Poc1 "Proteome of centrioles 1 | 0.067 | 0.191 | 0.307 | 3.4e-10 | |
| ASPGD|ASPL0000006405 | 1878 | AN6960 [Emericella nidulans (t | 0.139 | 0.082 | 0.281 | 3.2e-05 |
| TAIR|locus:2198888 TPR1 "TOPLESS-related 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4257 (1503.6 bits), Expect = 0., P = 0.
Identities = 834/1135 (73%), Positives = 927/1135 (81%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD+HDR KAV+ILVKDLKVFSTFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFP L+ SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGXXX 240
WQHQLCKNPRPNPDIKTLFVDH+C PN ARAPSP NNPLLGSLPKA FPPLGAHG
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCRLPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPFQ 240
Query: 241 XXXXXXXXXLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGD 300
LAGWMS+P +V HPAVSGG I LG+PSI AA LKHPRTPP+N +VDYPSGD
Sbjct: 241 PTPSPVPTPLAGWMSSPSSVPHPAVSGGPIALGAPSIQAA-LKHPRTPPSNSAVDYPSGD 299
Query: 301 SDHLSKRTRPIGISDEINLPVNVLPVSFTGXXXXXXXXQAFSTPEDLPKTVTRTLNQGSS 360
SDH+SKRTRP+GISDE++L VN+LP++F G Q F P+DLPKTV RTL+QGSS
Sbjct: 300 SDHVSKRTRPMGISDEVSLGVNMLPMTFPGQAHGHN--QTFKAPDDLPKTVARTLSQGSS 357
Query: 361 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 420
PMSMDFHP++QTLLLVGTNVGDIGLWEVGSRERLV + FKVWDL CSMPLQAALVK+P
Sbjct: 358 PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417
Query: 421 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 480
VSVNRVIWSPDGSLFGVAYSRHIVQ+YSYHGG+++RQHLEIDAHVGGVNDIAFS PNKQL
Sbjct: 418 VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDIAFSTPNKQL 477
Query: 481 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 540
CV TCGDDKTIKVWDA G K+Y FEGHEAPVYS+CPH+KENIQFIFSTALDGKIKAWLY
Sbjct: 478 CVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLY 537
Query: 541 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQ-GFRKRSLG-VVQFDTTKNRFLAAGDDF-- 596
DN+GSRVDYEAPGRWCTTMAYSADGTR + G K +V+++ ++ F
Sbjct: 538 DNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHK 597
Query: 597 -SIKFWDMDSVQ---LLTSIDADGGLPASPRIRF----NKDGCLLA---VSTNDNGIKIL 645
S+ D+ + L D I+ + DG L A + N G +L
Sbjct: 598 RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGGLQASPRIRFNKEG-SLL 656
Query: 646 ATSDGIRLLRTFEN-----LAYDASR-TSENSKPTISPIXXXXXXXXXXXXXXXXXXXMV 699
A S +++ N L + +SE+SKP I+ I +V
Sbjct: 657 AVSANDNMIKVMANSDGLRLLHTVENLSSESSKPAINSIPMVERPAS-----------VV 705
Query: 700 SIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIF 759
SIPGMNGD R++ DVKP ITEESNDKSKVWKLTE+ EP+QCRSLRLPEN+R TKISRLIF
Sbjct: 706 SIPGMNGDSRNMVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLPENMRVTKISRLIF 765
Query: 760 TNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE 819
TNSGNAILALASNAIHLLWKWQR +RN++GKATAS+ PQ WQP SGI+MTNDV ++NPEE
Sbjct: 766 TNSGNAILALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASGILMTNDVAETNPEE 825
Query: 820 AVPCFALSKNDSYVMSASGGKISLFNXXXXXXXXXXXXXXXXXXXXXXHPQDNNIIAIGM 879
AVPCFALSKNDSYVMSASGGKISLFN HPQDNNIIAIGM
Sbjct: 826 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM 885
Query: 880 DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN 939
DDS+IQIYNVRVDEVKSKLKGHSKRITGLAFS+ LNVLVSSGAD+QLCVW++DGWEKQK+
Sbjct: 886 DDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDGWEKQKS 945
Query: 940 RFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPIT 999
+ LQIP GR+ ++ SDTRVQFHQDQ+HFLVVHETQLAI+ETTKLEC+KQW RES+APIT
Sbjct: 946 KVLQIPQGRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLECMKQWPVRESAAPIT 1005
Query: 1000 HATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1059
HATFSCDSQL+Y F+DAT+CVFS+ANL+LRCR+NPSAYLPA +S+SNVHPLVIAAHPQE
Sbjct: 1006 HATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLSNSNVHPLVIAAHPQE 1065
Query: 1060 PNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR 1114
N FA+GLSDGGVH+FEPLESEGKWGV PP +NGS S++ ATP VG S SDQ QR
Sbjct: 1066 SNMFAVGLSDGGVHIFEPLESEGKWGVAPPPENGSASAVTATPSVGASASDQPQR 1120
|
|
| TAIR|locus:2086770 TPR2 "TOPLESS-related 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3331 (1177.6 bits), Expect = 0., P = 0.
Identities = 665/1123 (59%), Positives = 809/1123 (72%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKE+VHKLEQESGFFFN+KYFE++ G WD+VEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD++DRAKAVEIL KDLKVF+TFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
LENFRENEQLSKYGDTKSARSIM ELKKLIEANPLFR+KL FP+ K SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGXXX 240
WQHQLCKNPRPNPDIKTLF+DH+C NGARA +P N P+ ++ + F PLG HG
Sbjct: 181 WQHQLCKNPRPNPDIKTLFLDHSCSPSNGARALTPVNLPV-AAVARPSNFVPLGVHGGPF 239
Query: 241 XXXXX---XXXXLAGWMSNP-PTVTHPAVSGGAIGLGSPSIPAAA--LKHPRTPPTNPSV 294
LAGWM+NP P+ + P SG P P+ LKHPR P + +
Sbjct: 240 QSNPAPAPNANALAGWMANPNPSSSVP--SGVVAASPFPMQPSQVNELKHPRAPSNSLGL 297
Query: 295 -DYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGXXXXXXXXQAFSTPEDLPKTVTR 353
DY S D + L KR R S+E+ P + P + + +DLP+ V
Sbjct: 298 MDYQSADHEQLMKRLRSAQTSNEVTYPAHSHPPA---------------SLDDLPRNVVS 342
Query: 354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQA 413
T+ QGS +SMDFHP TLL VG + G++ LWEVGSRE++V FK+W++ ACS+ Q
Sbjct: 343 TIRQGSVVISMDFHPSHHTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQG 402
Query: 414 ALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF 473
++VK+P +SV RV WSPDG+L GV++++H++ +Y+Y G D +RQHLEIDAHVG VND+AF
Sbjct: 403 SIVKEPSISVTRVAWSPDGNLLGVSFTKHLIHVYAYQGSD-LRQHLEIDAHVGCVNDLAF 461
Query: 474 SHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDG 533
+HPNKQ+CV+TCGDDK IKVWD + G K + FEGHEAPVYS+CPH KENIQFIFSTALDG
Sbjct: 462 AHPNKQMCVVTCGDDKLIKVWDLS-GKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDG 520
Query: 534 KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR-------------------------- 567
KIKAWLYDN+GSRVDY+APG+WCTTM YSADG+R
Sbjct: 521 KIKAWLYDNVGSRVDYDAPGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKR 580
Query: 568 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN 627
TY GFRK+S GVVQFDTT+NRFLA G+D IKFW+MD+ LLT ++A+GGLP PR+RFN
Sbjct: 581 TYLGFRKKSAGVVQFDTTRNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFN 640
Query: 628 KDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPIXXXXXXXXX 687
KDG LLAV+T DNG KILA +DG+R LR FE +++AS+ S + K + S +
Sbjct: 641 KDGNLLAVTTADNGFKILANTDGLRTLRAFEARSFEASKASIDMKVSTSAMASSISPAIG 700
Query: 688 XXXXXXXXXXMVSIPGMNG-DVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLP 746
P NG + S KPR +S DKSK +LTE+ +P QCR + +P
Sbjct: 701 KIEHMDAGSPARPTPIPNGIEAMSRTMEKPR-NLDSVDKSKPLELTEIVDPTQCRQVTMP 759
Query: 747 ENLRA-TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSG 805
++ + +K++RL++TNSG +LAL SN + LWKW R E+N +GKATASV PQ WQP SG
Sbjct: 760 DSKDSVSKVARLLYTNSGVGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHWQPNSG 819
Query: 806 IMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNXXXXXXXXXXXXXXXXXXXX 865
++M NDV + NPE +VPC ALSKNDSYVMSA GGK+SLFN
Sbjct: 820 LLMANDVPE-NPEGSVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFL 878
Query: 866 XXHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ 925
HPQDNNIIAIGM+DSSI IYNVRVDEVK+KLKGH K ITGLAFS ALN+LVSSGAD+Q
Sbjct: 879 AFHPQDNNIIAIGMEDSSIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQ 938
Query: 926 LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC 985
L W++D WEK+K+ +Q+P G+ P DTRVQFH DQI LV HETQLAI++ +K+EC
Sbjct: 939 LFFWTADSWEKKKSSAIQLPPGKAPVG--DTRVQFHNDQIQLLVSHETQLAIYDASKMEC 996
Query: 986 VKQWVPRES-SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV- 1043
+ +WVP+E+ S+PIT A++SC+SQLVYA F D + VF A +L+LRCRI PSAY+P
Sbjct: 997 IHKWVPQEALSSPITSASYSCNSQLVYASFADGNIAVFDAESLRLRCRIAPSAYMPQPTP 1056
Query: 1044 SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGV 1086
+S+ + P VI AHPQEPN+ A+GLSDG V V EP E +WGV
Sbjct: 1057 NSAPIFPQVITAHPQEPNQLAVGLSDGSVKVIEPSELSRRWGV 1099
|
|
| TAIR|locus:2036204 TPL "TOPLESS" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2597 (919.2 bits), Expect = 0., Sum P(2) = 0.
Identities = 486/569 (85%), Positives = 519/569 (91%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDKHDR KAV+ILVKDLKVFSTFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFP L+NSRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGXXX 240
WQHQLCKNPRPNPDIKTLFVDH+CG PNGARAPSP NNPLLG +PKAG FPPLGAHG
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCGPPNGARAPSPVNNPLLGGIPKAGGFPPLGAHGPFQ 240
Query: 241 XXXXXXXXXLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGD 300
LAGWMS+P +V HPAVS GAI LG PSIPAA LKHPRTPPTN S+DYPS D
Sbjct: 241 PTASPVPTPLAGWMSSPSSVPHPAVSAGAIALGGPSIPAA-LKHPRTPPTNASLDYPSAD 299
Query: 301 SDHLSKRTRPIGISDEINLPVNVLPVSFTGXXXXXXXXQAFSTPEDLPKTVTRTLNQGSS 360
S+H+SKRTRP+GISDE+NL VN+LP+SF+G AF P+DLPKTV RTL+QGSS
Sbjct: 300 SEHVSKRTRPMGISDEVNLGVNMLPMSFSGQAHGHS--PAFKAPDDLPKTVARTLSQGSS 357
Query: 361 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 420
PMSMDFHP++QTLLLVGTNVGDIGLWEVGSRERLV + FKVWDL CSMPLQAALVK+P
Sbjct: 358 PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417
Query: 421 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 480
VSVNRVIWSPDGSLFGVAYSRHIVQ+YSYHGG+++RQHLEIDAHVGGVNDI+FS PNKQL
Sbjct: 418 VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQL 477
Query: 481 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 540
CVITCGDDKTIKVWDA G K++ FEGHEAPVYSVCPH+KENIQFIFSTALDGKIKAWLY
Sbjct: 478 CVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLY 537
Query: 541 DNLGSRVDYEAPGRWCTTMAYSADGTRTY 569
DN+GSRVDY+APGRWCTTMAYSADGTR +
Sbjct: 538 DNMGSRVDYDAPGRWCTTMAYSADGTRLF 566
|
|
| TAIR|locus:2040100 AT2G25420 "AT2G25420" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 604 (217.7 bits), Expect = 1.8e-91, Sum P(2) = 1.8e-91
Identities = 139/374 (37%), Positives = 205/374 (54%)
Query: 730 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSG 789
K E+ +P+QC +L LP+ KI+RL ++ SG+ ILALA +A H LW W ++ N
Sbjct: 368 KPNEIKDPSQCNALVLPDCFSEEKIARLTYSPSGDYILALAEDATHKLWTWSSSQ-NEFC 426
Query: 790 KATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNXXXX 849
K P+L QP SG M N++ S +++ CFA+ SY+ S SGGKI++F+
Sbjct: 427 KENVYPKPRLHQPQSGKTMENEMATS-VQKSTSCFAVK--GSYLFSTSGGKIAVFDLKNF 483
Query: 850 XXXXXXXXXXXXXXXXXXHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLA 909
P D ++A+G+DD SI I+ + +VK KL+GH ++IT LA
Sbjct: 484 EKVASFGSPTPMATYFIFIPGD--LLAVGLDDGSIFIHCLSSRKVKEKLEGHDQKITCLA 541
Query: 910 FSHALNVLVSSGADSQLCVWSSDGWEK--QKNRFLQIPTGRTPTAQS-DTRVQFHQDQIH 966
FS NVLVSS +D +LC+WS+ W K KN + + S T +QF QI
Sbjct: 542 FSRCFNVLVSSDSDGKLCLWSTKSWVKLTSKNSTRKFCNRSNLESTSLVTHIQFDPYQIE 601
Query: 967 FLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1026
LVVH+ + ++E L+C QW+P S IT AT+S D +++Y F ++ + +
Sbjct: 602 LLVVHDGWIGLYEVRTLDCRLQWIPDASDPAITSATYSSDGEIIYVGFRCGSIKIVDSKT 661
Query: 1027 LKLRCRINPSAYLPAGVS--SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKW 1084
C+IN +++ S S V+P V+AAHP PN+ + GLS+G V V +PL S G W
Sbjct: 662 FMTLCQINLTSFTQLSTSNISLEVYPTVVAAHPSHPNQISAGLSNGKVIVLQPLWSGG-W 720
Query: 1085 GVPPPV-DNGSTSS 1097
G P+ DNG S+
Sbjct: 721 GEAAPLEDNGDYSN 734
|
|
| DICTYBASE|DDB_G0278353 smu1 "suppressor of mec-8 and unc-52-like protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 136 (52.9 bits), Expect = 4.8e-16, Sum P(3) = 4.8e-16
Identities = 58/190 (30%), Positives = 90/190 (47%)
Query: 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFNM----KYFEDEVHNGNWDDVEKYLSGF 60
S++++ LILQFL E ++ L++E+G N + F ++V NGNWD V
Sbjct: 16 SQDVIKLILQFLKENSLGNSLTALQEETGINLNAVDSKETFLNDVKNGNWDSV------L 69
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
T V R S + ++ +Q +E L H K E+ ++ N + + L
Sbjct: 70 TVVSTLRLSTTLLMDLYEQ-IVELL--H--LKEYELCKYLIRKTEPLNYMKLNQQERYLK 124
Query: 121 LENFRENEQLS-----KYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLI 175
LEN + E + KYG T R K+LIE L + + P+ SRL +L+
Sbjct: 125 LENHLQREYIDLGDFYKYGITTEKRR------KQLIEQ--LNNEIITVPS---SRLLSLL 173
Query: 176 NQSLNWQ-HQ 184
+QSL+WQ HQ
Sbjct: 174 SQSLHWQKHQ 183
|
|
| DICTYBASE|DDB_G0287273 wdr5 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 167 (63.8 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 48/170 (28%), Positives = 83/170 (48%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
S++ V +SPDG A + ++I+ + G R ++ H G++DIA+S +K +C
Sbjct: 48 SISSVKFSPDGKWLASASADKTIKIWGAYDGKFERT---LEGHKEGISDIAWSQDSKLIC 104
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
+ DDKTIK+WD +G +GH+ V+ V + + N+ I S + D ++ W
Sbjct: 105 --SASDDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNPQSNL--IVSGSFDENVRIWDV- 159
Query: 542 NLGSRVDY-EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 590
N G A T + ++ DGT G ++ + +DTT + L
Sbjct: 160 NTGECTKMISAHSDPVTGVHFNRDGTLVVSGSYDGTVRI--WDTTTGQLL 207
|
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| TAIR|locus:2159562 AT5G08560 "AT5G08560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 132 (51.5 bits), Expect = 1.2e-10, Sum P(4) = 1.2e-10
Identities = 50/203 (24%), Positives = 90/203 (44%)
Query: 7 ELVFLILQFLDEEKFKETVHKLEQESGFFFN---MKYFEDEVHNGNWDDVEKYLSGFTKV 63
E V +I + L + +T LE+ESG + +K F +V +G WD K L
Sbjct: 67 EFVRIITRALYSLGYDKTGAMLEEESGISLHNSTIKLFLQQVKDGKWDQSVKTLHRIGFP 126
Query: 64 DDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLEN 123
D+ F + +QK+LE L A A+ L ++ + + + + L++ +
Sbjct: 127 DEKAVKAASFL-LLEQKFLEFLKVEKIADALRTLRNEMAPLRINTKRVHELASSLISPSS 185
Query: 124 FRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQH 183
F + + ++ ++RS +L EL+ L+ A+ + +K RL L+ SL+ Q
Sbjct: 186 FISHTTSTPGKESVNSRSKVLEELQTLLPASVIIPEK---------RLECLVENSLHIQR 236
Query: 184 QLCKNPRPNPDIKTLFVDHTCGQ 206
C +L+ DH CG+
Sbjct: 237 DSCVFHNTLDSDLSLYSDHQCGK 259
|
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| TAIR|locus:2172432 AT5G43920 "AT5G43920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 118 (46.6 bits), Expect = 2.3e-10, Sum P(3) = 2.3e-10
Identities = 52/205 (25%), Positives = 90/205 (43%)
Query: 7 ELVFLILQFLDEEKFKETVHKLEQESGFFF---NMKYFEDEVHNGNWDDVEKYLSGF--T 61
E + +++Q L FK + LE ES + + ++ E +V +GNWD + L
Sbjct: 19 EFIRILVQCLYSLGFKNSASCLEFESKILYKTADSEFLEKQVLSGNWDSCVQVLDRIFDN 78
Query: 62 KVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTL 121
+DD R + + + KQ LE L + D + A+ +L K + E++ + ++
Sbjct: 79 SMDDTRNTA--LYLVFKQCLLEYLKRGDVSLALNVLRKQAPLLRMGKEKIHRLACDIVYS 136
Query: 122 ENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNW 181
+ E + R +LVEL+KLI PL + P RL L+ ++
Sbjct: 137 KEMESGEVDNCL--VLDLRRKLLVELEKLI---PL---PIVIPE---RRLEHLVETAVMD 185
Query: 182 QHQLCKNPRPNPDIKTLFVDHTCGQ 206
Q C + D +L+ DH CG+
Sbjct: 186 QIDTCMYHN-SCDAVSLYKDHCCGR 209
|
|
| FB|FBgn0036354 Poc1 "Proteome of centrioles 1" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 92 (37.4 bits), Expect = 3.4e-10, Sum P(3) = 3.4e-10
Identities = 24/78 (30%), Positives = 39/78 (50%)
Query: 580 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 639
V FD+T + L A DD S K W + Q ++S S + F+ +G L+A +++D
Sbjct: 108 VDFDSTGHLMLTASDDKSAKIWRVARRQFVSSFAQQNNWVRSAK--FSPNGKLVATASDD 165
Query: 640 NGIKILATSDGIRLLRTF 657
++I G +RTF
Sbjct: 166 KSVRIYDVDSG-ECVRTF 182
|
|
| ASPGD|ASPL0000006405 AN6960 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 146 (56.5 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 47/167 (28%), Positives = 79/167 (47%)
Query: 397 RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR 456
R K+W A + LQ L + V V++S D L A V+I+ ++
Sbjct: 453 RTVKIWH--AATGSLQRTL-EGHNDWVRSVVFSHDSRLIASASDDMTVKIWDT-ATVPLQ 508
Query: 457 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 516
+LE +H V + FSH ++ L + DD T+K+WD G+ + EGH+ V SV
Sbjct: 509 NNLE--SHDNWVRSVVFSHDSRLLA--SASDDMTVKIWDTATGSLENTLEGHDDRVNSVS 564
Query: 517 PHHKENIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYS 562
+ + + S + DG +K W Y G+ + ++ GR ++A+S
Sbjct: 565 --FSPDSRLLASASDDGTVKIW-YAATGTVQHTFDGSGRVAISLAFS 608
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q0WV90 | TPR1_ARATH | No assigned EC number | 0.8149 | 0.9820 | 0.9767 | no | no |
| Q94AI7 | TPL_ARATH | No assigned EC number | 0.8298 | 0.9919 | 0.9770 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | estExt_Genewise1_v1.C_440031 | hypothetical protein (1172 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1114 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 6e-24 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-23 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-21 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 8e-18 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-17 | |
| smart00668 | 58 | smart00668, CTLH, C-terminal to LisH motif | 1e-15 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-14 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 5e-13 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 6e-13 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 9e-13 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-12 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 6e-12 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-10 | |
| smart00667 | 34 | smart00667, LisH, Lissencephaly type-1-like homolo | 4e-06 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 6e-06 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 6e-06 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 4e-05 | |
| pfam10607 | 144 | pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif | 3e-04 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 0.001 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 6e-24
Identities = 60/245 (24%), Positives = 96/245 (39%), Gaps = 32/245 (13%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
V V +SPDG L ++++ G+ +R L+ H G V D+A S L
Sbjct: 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRT-LK--GHTGPVRDVAASADGTYL- 66
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
+ DKTI++WD G GH + V SV + + + S++ D IK W +
Sbjct: 67 -ASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP--DGRILSSSSRDKTIKVWDVE 123
Query: 542 NLGSRVDYEAPGRWCTTMAY----------SADGT------------RTYQGFRKRSLGV 579
W ++A+ S DGT T G
Sbjct: 124 TGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNS- 182
Query: 580 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 639
V F + L++ D +IK WD+ + + L ++ S + F+ DG LLA + D
Sbjct: 183 VAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNS--VAFSPDGYLLASGSED 240
Query: 640 NGIKI 644
I++
Sbjct: 241 GTIRV 245
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 4e-23
Identities = 64/325 (19%), Positives = 101/325 (31%), Gaps = 92/325 (28%)
Query: 362 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV 421
+ F P + L GS + + KVWDL + +K
Sbjct: 13 TCVAFSPDGKLLA-------------TGSGDGTI----KVWDLETGELLRT---LKGHTG 52
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR---QHLE------------------ 460
V V S DG+ S ++++ G+ VR H
Sbjct: 53 PVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSS 112
Query: 461 ------------------IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ 502
+ H VN +AFS V + D TIK+WD G
Sbjct: 113 RDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTF--VASSSQDGTIKLWDLRTGKCV 170
Query: 503 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS 562
GH V SV + S++ DG IK W ++A+S
Sbjct: 171 ATLTGHTGEVNSVAFSPDGE--KLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFS 228
Query: 563 ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD-DFSIKFWDMDSVQLLTSIDADGGLPAS 621
DG LA+G D +I+ WD+ + + + ++ +
Sbjct: 229 PDG----------------------YLLASGSEDGTIRVWDLRTGECVQTLSG----HTN 262
Query: 622 P--RIRFNKDGCLLAVSTNDNGIKI 644
+ ++ DG LA + D I+I
Sbjct: 263 SVTSLAWSPDGKRLASGSADGTIRI 287
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 94.3 bits (235), Expect = 5e-21
Identities = 68/303 (22%), Positives = 105/303 (34%), Gaps = 68/303 (22%)
Query: 318 NLPVNVLPVSFTGHSH-------SHSHSQAFSTPEDLPKTV----------TRTLNQGSS 360
+L L + GH+ S + S D KT+ RTL +S
Sbjct: 37 DLETGELLRTLKGHTGPVRDVAASADGTYLASGSSD--KTIRLWDLETGECVRTLTGHTS 94
Query: 361 P-MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP 419
S+ F P +L + I +W+V + + C L+ D
Sbjct: 95 YVSSVAFSP-DGRILSSSSRDKTIKVWDVETGK--------------CLTTLRGH--TDW 137
Query: 420 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ 479
VN V +SPDG+ + ++++ G V H G VN +AFS ++
Sbjct: 138 ---VNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL---TGHTGEVNSVAFSPDGEK 191
Query: 480 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 539
L + D TIK+WD + G GHE V SV + + S + DG I+ W
Sbjct: 192 LL--SSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYL--LASGSEDGTIRVWD 247
Query: 540 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIK 599
T++A+S DG R + D +I+
Sbjct: 248 LRTGECVQTLSGHTNSVTSLAWSPDG---------------------KRLASGSADGTIR 286
Query: 600 FWD 602
WD
Sbjct: 287 IWD 289
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 87.5 bits (215), Expect = 8e-18
Identities = 90/467 (19%), Positives = 170/467 (36%), Gaps = 55/467 (11%)
Query: 327 SFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSP-MSMDFHPVQQTLLLVGTNVGDIGL 385
+ S + + LP + L S+ F P + LLL G++ G I L
Sbjct: 33 LGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGE-LLLSGSSDGTIKL 91
Query: 386 WEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW-SPDGSLFGVAYSRHIV 444
W++ + E+L+ +L SV+++ SPDG+ +A S
Sbjct: 92 WDLDNGEKLI-----------------KSLEGLHDSSVSKLALSSPDGNSILLASSSLDG 134
Query: 445 QIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 504
+ + + ++ H V +AFS P+ +L D TIK+WD G
Sbjct: 135 TVKLWDLSTPGKLIRTLEGHSESVTSLAFS-PDGKLLASGSSLDGTIKLWDLRTGKPLST 193
Query: 505 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD 564
GH PV S+ + I S + DG I+ W G+ +
Sbjct: 194 LAGHTDPVSSLAFSPDGGL-LIASGSSDGTIRLWDLST----------GKLLRS------ 236
Query: 565 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRI 624
T G + F + + D +I+ WD+ S L + +
Sbjct: 237 ---TLSGHSDSVVSS--FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVL-SV 290
Query: 625 RFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAA 684
F+ DG LLA ++D +++ G +LL + ++ +S + P S + + +
Sbjct: 291 AFSPDGKLLASGSSDGTVRLWDLETG-KLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSD 349
Query: 685 AATSAGLADRAASMVSIPGMNGDVRSLA--DVKPRITEESNDKS-KVWKLTELSEPNQCR 741
T R + + +V S++ ++ S D + ++W L+ S
Sbjct: 350 DGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLD 409
Query: 742 SLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSS 788
++ L F+ G ++ + +S+ LW + + ++ S
Sbjct: 410 GHTSR-------VTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVS 449
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 2e-17
Identities = 51/203 (25%), Positives = 77/203 (37%), Gaps = 32/203 (15%)
Query: 458 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV-- 515
+ H GGV +AF P+ +L + T D TIKVWD G +GH PV V
Sbjct: 2 RRTLKGHTGGVTCVAF-SPDGKL-LATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA 59
Query: 516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 575
++ S + D I+ W D E RT G
Sbjct: 60 SADGT----YLASGSSDKTIRLW---------DLETGEC-----------VRTLTGHTSY 95
Query: 576 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV 635
V F ++ D +IK WD+++ + LT++ S + F+ DG +A
Sbjct: 96 VSS-VAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNS--VAFSPDGTFVAS 152
Query: 636 STNDNGIKILATSDGIRLLRTFE 658
S+ D IK+ G + + T
Sbjct: 153 SSQDGTIKLWDLRTG-KCVATLT 174
|
Length = 289 |
| >gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 1e-15
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 34 FFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAK 92
F K + + G+WD+ ++LS R S K+ FE+RKQK+LE + + +
Sbjct: 1 EFDERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKLEE 58
|
Alpha-helical motif of unknown function. Length = 58 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 3e-14
Identities = 42/219 (19%), Positives = 84/219 (38%), Gaps = 29/219 (13%)
Query: 821 VPCFALSKNDSYVMSASG-GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM 879
V C A S + + + SG G I ++++ T + + T +A D +A G
Sbjct: 12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA-DGTYLASGS 70
Query: 880 DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN 939
D +I+++++ E L GH+ ++ +AFS +L SS D + VW
Sbjct: 71 SDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWD--------- 121
Query: 940 RFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESS---- 995
T + T ++ H D ++ + + +++ +K W R
Sbjct: 122 ---------VETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVAT 172
Query: 996 -----APITHATFSCDSQLVYACFLDATVCVFSAANLKL 1029
+ FS D + + + D T+ ++ + K
Sbjct: 173 LTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC 211
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.4 bits (176), Expect = 5e-13
Identities = 93/492 (18%), Positives = 169/492 (34%), Gaps = 102/492 (20%)
Query: 454 EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY--IFEGHEAP 511
L + H + IAFS + L + D TIK+WD NG K + H++
Sbjct: 54 PDLSSLLLRGHEDSITSIAFSPDGELLL--SGSSDGTIKLWDLDNGEKLIKSLEGLHDSS 111
Query: 512 VYSVCPHHKE-NIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTY 569
V + + N + S++LDG +K W G + E T++A+S DG
Sbjct: 112 VSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDG---- 167
Query: 570 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD 629
K + D +IK WD+ + + L+++
Sbjct: 168 ----------------KLLASGSSLDGTIKLWDLRTGKPLSTLAGH-----------TDP 200
Query: 630 GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSA 689
LA S + + +SDG L S S +S +S S
Sbjct: 201 VSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFS---------- 250
Query: 690 GLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL 749
+G + + S+ ++W L S + S
Sbjct: 251 --------------PDGSLL--------ASGSSDGTIRLWDLRSSSSLLRTLSGHS---- 284
Query: 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 809
+ + + F+ G + + +S+ LW + S
Sbjct: 285 --SSVLSVAFSPDGKLLASGSSDGTVRLW-------DLETGKLLSS-------------- 321
Query: 810 NDVTDSNPEEAVPCFALSKNDSYVMSASG--GKISLFNMMTFKTMATFMPPPPAATFLAF 867
+T E V + S + S ++S G I L+++ T K + T ++F
Sbjct: 322 --LTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNV-LSVSF 378
Query: 868 HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLC 927
P D +++ G D +++++++ + L GH+ R+T L FS L S +D+ +
Sbjct: 379 SP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIR 437
Query: 928 VWSSDGWEKQKN 939
+W K +
Sbjct: 438 LWDLKTSLKSVS 449
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 6e-13
Identities = 37/170 (21%), Positives = 69/170 (40%), Gaps = 14/170 (8%)
Query: 863 TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA 922
T +AF P D ++A G D +I+++++ E+ LKGH+ + +A S L S +
Sbjct: 13 TCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSS 71
Query: 923 DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFET 980
D + +W + ++ TG T S V F D L + + +++
Sbjct: 72 DKTIRLWDL-----ETGECVRTLTGHTSYVSS---VAFSPDG-RILSSSSRDKTIKVWDV 122
Query: 981 TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR 1030
+C+ R + + FS D V + D T+ ++ K
Sbjct: 123 ETGKCLT--TLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCV 170
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 9e-13
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 2/114 (1%)
Query: 818 EEAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIA 876
V A S + ++S+S G I L+++ T K + T +AF P D ++A
Sbjct: 177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP-DGYLLA 235
Query: 877 IGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
G +D +I+++++R E L GH+ +T LA+S L S AD + +W
Sbjct: 236 SGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 4e-12
Identities = 48/238 (20%), Positives = 95/238 (39%), Gaps = 16/238 (6%)
Query: 798 QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTMATFM 856
++W +G ++ T V A S + +Y+ S S I L+++ T + + T
Sbjct: 34 KVWDLETGELLR---TLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLT 90
Query: 857 PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNV 916
+ +AF P D I++ D +I++++V + + L+GH+ + +AFS
Sbjct: 91 GHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTF 149
Query: 917 LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQL 975
+ SS D + +W + TG T S V F D L + +
Sbjct: 150 VASSSQDGTIKLWDLRTGKCVATL-----TGHTGEVNS---VAFSPDGEKLLSSSSDGTI 201
Query: 976 AIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1033
+++ + +C+ R + FS D L+ + D T+ V+ + +
Sbjct: 202 KLWDLSTGKCLGT--LRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL 257
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.0 bits (167), Expect = 6e-12
Identities = 69/303 (22%), Positives = 106/303 (34%), Gaps = 54/303 (17%)
Query: 348 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLW--EVGSRERLVLR-------- 397
K ++ S+ F P L+ G++ G I LW G R L
Sbjct: 188 GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVS 247
Query: 398 ----------------NFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR 441
++WDL + S L+ + SV V +SPDG L S
Sbjct: 248 SFSPDGSLLASGSSDGTIRLWDLRSSSSLLR--TLSGHSSSVLSVAFSPDGKLLASGSSD 305
Query: 442 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 501
V+++ G + L + H G V+ ++FS P+ L V DD TI++WD G
Sbjct: 306 GTVRLWDLETGKLLSS-LTLKGHEGPVSSLSFS-PDGSLLVSGGSDDGTIRLWDLRTGKP 363
Query: 502 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAY 561
EGH V SV + ST DG ++ W + + T++ +
Sbjct: 364 LKTLEGHS-NVLSVSFSPDGRVVSSGST--DGTVRLWDLSTGSLLRNLDGHTSRVTSLDF 420
Query: 562 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPAS 621
S DG + D +I+ WD+ + S DG + AS
Sbjct: 421 SPDG---------------------KSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLAS 459
Query: 622 PRI 624
Sbjct: 460 KSS 462
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.2 bits (152), Expect = 4e-10
Identities = 56/318 (17%), Positives = 111/318 (34%), Gaps = 21/318 (6%)
Query: 799 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG---GKISLFNMMT-FKTMAT 854
LW +G + + + S + + ++ AS G + L+++ T K + T
Sbjct: 91 LWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRT 150
Query: 855 FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL 914
+ T LAF P + + D +I+++++R + S L GH+ ++ LAFS
Sbjct: 151 LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDG 210
Query: 915 N-VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET 973
++ S +D + +W K L + ++ F D
Sbjct: 211 GLLIASGSSDGTIRLWDLSTG-KLLRSTLSGHSDSVVSS-------FSPDGSLLASGSSD 262
Query: 974 QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1033
+ S+ + FS D +L+ + D TV ++ KL +
Sbjct: 263 GTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSL 322
Query: 1034 NPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNG 1093
+ VSS ++ P + G DG + +++ + + +
Sbjct: 323 TLKGH-EGPVSS-------LSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVL 374
Query: 1094 STSSMPATPPVGGSGSDQ 1111
S S P V +D
Sbjct: 375 SVSFSPDGRVVSSGSTDG 392
|
Length = 466 |
| >gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 4e-06
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 4 LSRELVFLILQFLDEEKFKETVHKLEQESGF 34
EL LIL++L ++ET L++ESG
Sbjct: 2 SRSELNRLILEYLLRNGYEETAETLQKESGL 32
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 6e-06
Identities = 30/134 (22%), Positives = 52/134 (38%), Gaps = 11/134 (8%)
Query: 898 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTR 957
LKGH+ +T +AFS +L + D + VW + E R L+ TG
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL--RTLKGHTG------PVRD 56
Query: 958 VQFHQDQIHFLVVHE-TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD 1016
V D + + +++ ECV+ S ++ FS D +++ + D
Sbjct: 57 VAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTS--YVSSVAFSPDGRILSSSSRD 114
Query: 1017 ATVCVFSAANLKLR 1030
T+ V+ K
Sbjct: 115 KTIKVWDVETGKCL 128
|
Length = 289 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 6e-06
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495
+ H G V +AFS L + DD T++VWD
Sbjct: 6 TLKGHTGPVTSVAFSPDGNLL--ASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 1e-05
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 893 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
E+ LKGH+ +T +AFS L S D + +W
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 2e-05
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495
+ H G V +AFS K L + DD TIK+WD
Sbjct: 7 TLKGHTGPVTSVAFSPDGKYL--ASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 4e-05
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 893 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
++ LKGH+ +T +AFS N+L S D + VW
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|220824 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif domain | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 3e-04
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 11/105 (10%)
Query: 35 FFNMKYFEDEVHNGNWDDVEKYL----SGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDR 90
F + + NG+ ++ ++ K++ N + FE+R Q+++E + +
Sbjct: 2 FKERNKIRESLLNGDLEEALEWCNENKPELLKINSN-----LEFELRLQQFIELIREGKI 56
Query: 91 AKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD 135
+A+E ++L F FNE+ KEI +L+ L F + S Y
Sbjct: 57 LEALEYARENLAPF--FNEQHLKEIQKLMGLLAFPDPTDSSPYKS 99
|
RanBPM is a scaffolding protein and is important in regulating cellular function in both the immune system and the nervous system. This domain is at the C-terminus of the proteins and is the binding domain for the CRA motif (for CT11-RanBPM), which is comprised of approximately 100 amino acids at the C terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined. This region contains CTLH and CRA domains annotated by SMART; however, these may be a single domain, and it is refereed to as a C-terminal to LisH motif. Length = 144 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.4 bits (98), Expect = 0.001
Identities = 31/165 (18%), Positives = 55/165 (33%), Gaps = 25/165 (15%)
Query: 341 FSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFK 400
+ + S+ F P L+ G++ G I LW++ + + L
Sbjct: 311 WDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEG- 369
Query: 401 VWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLE 460
+V V +SPDG + + V+++ G +R
Sbjct: 370 -------------------HSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLR---N 407
Query: 461 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 505
+D H V + FS + + D TI++WD K F
Sbjct: 408 LDGHTSRVTSLDFS--PDGKSLASGSSDNTIRLWDLKTSLKSVSF 450
|
Length = 466 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1114 | |||
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.98 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.97 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.97 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.96 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.96 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.96 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.96 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.96 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.96 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.95 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.95 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.95 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.95 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.95 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.95 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.95 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.95 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.95 | |
| PTZ00421 | 493 | coronin; Provisional | 99.95 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.95 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.95 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.95 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.94 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.94 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.94 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.94 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| PTZ00421 | 493 | coronin; Provisional | 99.94 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.94 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.94 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.93 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.93 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.93 | |
| PTZ00420 | 568 | coronin; Provisional | 99.93 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.93 | |
| PTZ00420 | 568 | coronin; Provisional | 99.93 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.93 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.93 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.93 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.92 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.92 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.92 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.92 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.91 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.91 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.9 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.9 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.9 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.9 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.9 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.9 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.89 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.89 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.89 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.89 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.88 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.88 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.87 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.87 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.87 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.87 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.86 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.86 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.85 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.85 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.85 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.85 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.84 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.84 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.84 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.84 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.84 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.83 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.83 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.83 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.82 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.82 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.81 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.8 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.8 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.8 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.79 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.78 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.78 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.77 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.75 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.74 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.74 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.74 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.74 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.73 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.73 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.73 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.73 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.72 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.72 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.72 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.72 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.71 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.71 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.71 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.7 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.7 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.7 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.69 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.69 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.68 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.67 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.66 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.66 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 99.66 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.65 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.65 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.64 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.64 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.62 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.62 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.6 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.59 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.59 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.59 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.59 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.58 | |
| KOG2659 | 228 | consensus LisH motif-containing protein [Cytoskele | 99.58 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.58 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.58 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.57 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.57 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.54 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.54 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.53 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.52 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.51 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.51 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.51 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.5 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.47 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.45 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.44 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.44 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.43 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.43 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.42 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.41 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.41 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.41 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.39 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.39 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.39 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.38 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.38 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.38 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.38 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.37 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.37 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.37 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.37 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.36 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.36 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.36 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.35 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.35 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.33 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.32 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.3 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.3 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.29 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.28 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.27 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.27 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.26 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.25 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.24 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.22 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.21 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.18 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.15 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.14 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.13 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.12 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.12 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.12 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.11 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.05 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.03 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.03 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.99 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.98 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.96 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.94 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.9 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.89 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.88 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.83 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.82 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.8 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.78 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.77 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.76 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.75 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.74 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.74 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.73 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.72 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.69 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.68 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.65 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.64 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.62 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.6 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.6 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.59 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.55 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 98.55 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.5 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.49 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.49 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.48 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.48 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.45 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.45 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.42 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.41 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.41 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.41 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.4 | |
| PF10607 | 145 | CLTH: CTLH/CRA C-terminal to LisH motif domain; In | 98.4 | |
| KOG0396 | 389 | consensus Uncharacterized conserved protein [Funct | 98.39 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.38 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.37 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.36 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.29 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.27 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.25 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.23 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.23 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.18 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.17 | |
| PF08513 | 27 | LisH: LisH; InterPro: IPR013720 The LisH motif is | 98.15 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.11 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.11 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.07 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.07 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.05 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.04 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.0 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.98 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.95 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.94 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.94 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.93 | |
| smart00668 | 58 | CTLH C-terminal to LisH motif. Alpha-helical motif | 97.9 | |
| smart00667 | 34 | LisH Lissencephaly type-1-like homology motif. Alp | 97.9 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 97.89 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.89 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.86 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.84 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.84 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.83 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.83 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.8 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.76 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.76 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.75 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.7 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.69 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.6 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.58 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.53 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.53 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.51 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.51 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.49 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.43 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.43 | |
| KOG2817 | 394 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.39 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.32 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.29 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 97.25 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.22 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.21 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.21 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.11 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.06 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.04 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.03 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.03 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.99 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 96.98 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.92 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.9 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 96.87 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 96.86 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 96.81 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.74 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.68 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.59 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.57 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 96.55 | |
| PRK10115 | 686 | protease 2; Provisional | 96.4 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.34 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.31 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.26 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.26 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.24 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.22 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 96.2 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.19 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.16 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.11 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 96.11 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.05 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.04 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 95.95 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 95.93 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.81 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 95.7 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 95.61 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 95.56 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.44 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.3 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 95.12 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.09 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 94.98 | |
| PRK10115 | 686 | protease 2; Provisional | 94.7 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 94.7 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 94.61 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 94.36 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 94.3 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 94.18 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 93.85 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 93.82 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 93.81 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 93.8 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 93.66 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 93.63 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 93.43 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 93.42 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 93.11 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 92.94 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 92.94 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 92.94 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 92.8 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 92.7 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 92.29 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 92.03 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 91.99 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 91.91 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 91.89 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 91.77 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 91.74 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 91.64 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 91.59 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 91.54 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 91.42 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 91.41 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 91.28 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 91.27 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 91.16 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 91.0 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 90.8 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 90.59 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 90.5 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 90.49 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 90.13 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 90.11 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 90.04 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 89.98 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 89.46 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 88.99 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 88.59 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 88.34 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 88.34 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 87.59 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 87.25 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 87.13 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 87.12 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 86.82 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 86.73 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 86.49 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 85.76 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 85.73 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 85.57 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 85.42 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 85.31 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 85.3 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 85.28 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 85.24 | |
| KOG1896 | 1366 | consensus mRNA cleavage and polyadenylation factor | 85.19 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 85.05 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 84.17 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 84.03 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 83.96 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 83.88 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 83.48 | |
| KOG4659 | 1899 | consensus Uncharacterized conserved protein (Rhs f | 83.46 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 82.52 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 82.3 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 81.51 | |
| PF11635 | 753 | Med16: Mediator complex subunit 16; InterPro: IPR0 | 81.49 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 81.25 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 81.05 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 81.02 | |
| PF09862 | 113 | DUF2089: Protein of unknown function (DUF2089); In | 80.91 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 80.46 |
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-64 Score=499.82 Aligned_cols=457 Identities=22% Similarity=0.310 Sum_probs=375.6
Q ss_pred hHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCcc---HHHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHHHHHHH
Q 001248 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN---MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKY 81 (1114)
Q Consensus 5 ~~~v~~li~q~L~~~g~~~s~~~l~~Esg~~~~---~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (1114)
+-|++|+++|+|+.+||.+|+..||.|+|+.++ ...|.+.++.|+|++++..+..+...+ +.....+.|++.+|+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~~~d-e~~~~ea~fLv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRISFED-ERNRKEAMFLVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhccCcc-hhhhHHHHHHHHHHHH
Confidence 458999999999999999999999999999886 899999999999999999998885444 3334569999999999
Q ss_pred HHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccc-ccchhhhccCCCChHHHHHHHHHHHhhcccCCCcccc
Q 001248 82 LEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLEN-FRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDK 160 (1114)
Q Consensus 82 lell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~~R~~l~~~l~~~~~~~~~~~~~ 160 (1114)
||++..+.+..|+.+||+.+.++. .+.+++++|..-+..++ +..++... .......|.+|+++|+++|||+++
T Consensus 96 LEf~k~~~is~al~~l~~~~~~lr-~~~kk~~el~~sll~sn~~~~ne~~~-~~~~~n~R~~ll~elskyi~p~il---- 169 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYLR-KNKKKFHELASSLLVSNDQFSNEENT-TAQLNNERDKLLDELSKYIPPNIL---- 169 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhhh-hhHHHHHHHHHHHhccccccccccch-hhhhchhHHHHHHHHHhhCCHhhc----
Confidence 999999999999999999998885 58899999887665543 33333322 223567899999999999999999
Q ss_pred cCCCCCchhHHHHHHHHhHHHHHhhccCCCCCCCCcCcccccccCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCC
Q 001248 161 LQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240 (1114)
Q Consensus 161 ~~~~~~p~~rL~~ll~qa~~~Q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1114)
+|++||+.||+||+++|+++|.||+ ..+..|||.||+|++ ..+|
T Consensus 170 -----lP~rRLehLl~qAv~~Q~d~cvyhn-sldsvsll~Dh~c~~---------------~qip--------------- 213 (519)
T KOG0293|consen 170 -----LPKRRLEHLLEQAVKYQRDSCVYHN-SLDSVSLLSDHFCGR---------------LQIP--------------- 213 (519)
T ss_pred -----CChHHHHHHHHHHHHHHHhHhHHhc-ccchhhhhhhcccCc---------------ccCC---------------
Confidence 9999999999999999999999999 566689999999999 2222
Q ss_pred CCCCCCCCcccccccCCCCCcCCCcccCccCCCCCCCccccccCCCCCCCCCcccCCCCChhhhhcccCCCCCccccccC
Q 001248 241 PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLP 320 (1114)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 320 (1114)
T Consensus 214 -------------------------------------------------------------------------------- 213 (519)
T KOG0293|consen 214 -------------------------------------------------------------------------------- 213 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccCCCCcCCCCcCCCCCCCCCcceeEecc-CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeee
Q 001248 321 VNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNF 399 (1114)
Q Consensus 321 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~ 399 (1114)
.+..+++. |.++||.+.||++|+| ||+++.|.+..||++.....+.-
T Consensus 214 ----------------------------~qt~qil~~htdEVWfl~FS~nGky-LAsaSkD~Taiiw~v~~d~~~kl--- 261 (519)
T KOG0293|consen 214 ----------------------------SQTWQILQDHTDEVWFLQFSHNGKY-LASASKDSTAIIWIVVYDVHFKL--- 261 (519)
T ss_pred ----------------------------chhhhhHhhCCCcEEEEEEcCCCee-EeeccCCceEEEEEEecCcceee---
Confidence 11113444 9999999999999997 99999999999999876544221
Q ss_pred eeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCe
Q 001248 400 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ 479 (1114)
Q Consensus 400 ~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~ 479 (1114)
..++.+|..+|..+.||||.+||++++.|..+.+||+.+|....... .+|...+.+++|.|||.
T Consensus 262 -------------~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~- 325 (519)
T KOG0293|consen 262 -------------KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGF- 325 (519)
T ss_pred -------------eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCc-
Confidence 11588999999999999999999999999999999999998765321 24668999999999999
Q ss_pred eEEEEecCCCCEEEEeCCCCcceeEeeccc-cCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEE
Q 001248 480 LCVITCGDDKTIKVWDATNGAKQYIFEGHE-APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTT 558 (1114)
Q Consensus 480 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~ 558 (1114)
.+++|+.|+++..||+. |..+..+++-. ..|.++++ +.||+++++.+.|..|++++.++...+. +.....++++
T Consensus 326 -~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlai--t~Dgk~vl~v~~d~~i~l~~~e~~~dr~-lise~~~its 400 (519)
T KOG0293|consen 326 -RFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAI--TYDGKYVLLVTVDKKIRLYNREARVDRG-LISEEQPITS 400 (519)
T ss_pred -eeEecCCCCcEEEecCC-cchhhcccccccceeEEEEE--cCCCcEEEEEecccceeeechhhhhhhc-cccccCceeE
Confidence 69999999999999965 56666666543 55888886 4577899999999999999988754443 2234456777
Q ss_pred EEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcC-CCCEEEEEe
Q 001248 559 MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVST 637 (1114)
Q Consensus 559 ~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~ 637 (1114)
+++|.+++ ++++.-.+..+++||++..+.+..+.+|.....+..-+|.. +..++++|+
T Consensus 401 ~~iS~d~k---------------------~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGS 459 (519)
T KOG0293|consen 401 FSISKDGK---------------------LALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGS 459 (519)
T ss_pred EEEcCCCc---------------------EEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecC
Confidence 77777666 67777789999999999999999998887666666777776 568999999
Q ss_pred CCCcEEEEEccCCccceeeccc
Q 001248 638 NDNGIKILATSDGIRLLRTFEN 659 (1114)
Q Consensus 638 ~dg~i~iwd~~~~~~~~~~~~~ 659 (1114)
+|+.|+||+..++ ..+..+.|
T Consensus 460 ED~kvyIWhr~sg-kll~~LsG 480 (519)
T KOG0293|consen 460 EDSKVYIWHRISG-KLLAVLSG 480 (519)
T ss_pred CCceEEEEEccCC-ceeEeecC
Confidence 9999999999888 56655544
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-64 Score=484.50 Aligned_cols=459 Identities=20% Similarity=0.332 Sum_probs=388.7
Q ss_pred hHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCcc----HHHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHHHHHH
Q 001248 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQK 80 (1114)
Q Consensus 5 ~~~v~~li~q~L~~~g~~~s~~~l~~Esg~~~~----~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (1114)
..||+|||.|||+|+.+++|+++||+|+++++| ++.|.+.|.+|+||.++..+.+|++.+ +-+..||||.
T Consensus 7 ssdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsLKLP~------kkL~dLYEqi 80 (508)
T KOG0275|consen 7 SSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSLKLPD------KKLIDLYEQI 80 (508)
T ss_pred cchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhccCch------hHHHHHHHHH
Confidence 468999999999999999999999999999998 899999999999999999999995543 6889999999
Q ss_pred HHHHHhcCCHHHHHHHHHhh--cccccccCHHHHHHHHHHhccccccchhhhccCCCChHHHHHHHHHHHhhcccCCCcc
Q 001248 81 YLEALDKHDRAKAVEILVKD--LKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFR 158 (1114)
Q Consensus 81 ~lell~~~~~~~A~~~l~~~--l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~l~~~l~~~~~~~~~~~ 158 (1114)
.|||+|.++...|..+||+. +.-|+..+|++|-.|+.|+..+.+++++.|.+ .+.+.+|..+++.|...+.-
T Consensus 81 vlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~d-ssKEkrRa~IAQ~ls~EV~V----- 154 (508)
T KOG0275|consen 81 VLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGD-SSKEKRRAVIAQALSGEVHV----- 154 (508)
T ss_pred HHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCc-chHHHHHHHHHHHhcCceEE-----
Confidence 99999999999999999975 55567789999999999999999999999875 23445566777777666654
Q ss_pred cccCCCCCchhHHHHHHHHhHHHHHhhccCCCCCCCCcCcccccccCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCC
Q 001248 159 DKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGP 238 (1114)
Q Consensus 159 ~~~~~~~~p~~rL~~ll~qa~~~Q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (1114)
+||+||+.||+||++||+. +|.+|||+..++
T Consensus 155 -------VppSRLlaLlGQaLKWQqH------------------------------------------QGLLPPGt~iDL 185 (508)
T KOG0275|consen 155 -------VPPSRLLALLGQALKWQQH------------------------------------------QGLLPPGTTIDL 185 (508)
T ss_pred -------cChHHHHHHHHHHhhhHhh------------------------------------------cCCCCCCceeee
Confidence 9999999999999999987 789999999999
Q ss_pred CCCCCCCCCCcccccccCCCCCcCCCcccCccCCCCCCCccccccCCCCCCCCCcccCCCCChhhhhcccCCCCCccccc
Q 001248 239 FQPTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEIN 318 (1114)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 318 (1114)
|+|..+ |...+++..|+...+.|++++.++
T Consensus 186 FRGkAA---------~K~~~Ee~~Pt~l~r~IKFg~KSh----------------------------------------- 215 (508)
T KOG0275|consen 186 FRGKAA---------MKDQEEERYPTQLARSIKFGQKSH----------------------------------------- 215 (508)
T ss_pred ccchhh---------hhhhHhhhchHHhhhheecccccc-----------------------------------------
Confidence 998872 345567777777777777666665
Q ss_pred cCcccccccccCCCCcCCCCcCCCCCCCCCcceeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEee
Q 001248 319 LPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRN 398 (1114)
Q Consensus 319 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~ 398 (1114)
+.|..|||||+| |++|+.||.|.|||+-+|+......
T Consensus 216 ------------------------------------------~EcA~FSPDgqy-LvsgSvDGFiEVWny~~GKlrKDLk 252 (508)
T KOG0275|consen 216 ------------------------------------------VECARFSPDGQY-LVSGSVDGFIEVWNYTTGKLRKDLK 252 (508)
T ss_pred ------------------------------------------hhheeeCCCCce-Eeeccccceeeeehhccchhhhhhh
Confidence 378899999997 9999999999999999998875322
Q ss_pred eeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeec-cccCCeeEEEecCCC
Q 001248 399 FKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPN 477 (1114)
Q Consensus 399 ~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~d~ 477 (1114)
++. ...+.-|.++|.|+.||.|...||+|+.||.|+||.+.+|.+++ .+. .|...|+|+.||.|+
T Consensus 253 YQA-----------qd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClR---rFdrAHtkGvt~l~FSrD~ 318 (508)
T KOG0275|consen 253 YQA-----------QDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLR---RFDRAHTKGVTCLSFSRDN 318 (508)
T ss_pred hhh-----------hcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHH---HhhhhhccCeeEEEEccCc
Confidence 221 12466788999999999999999999999999999999999988 454 899999999999999
Q ss_pred CeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCC--e
Q 001248 478 KQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR--W 555 (1114)
Q Consensus 478 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~--~ 555 (1114)
. .+++++.|.++++.-+.+|++++.+.||.+.|+...| .++|..+++++.||+|++|+..+.++..++...+. .
T Consensus 319 S--qiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~f--t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~ 394 (508)
T KOG0275|consen 319 S--QILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATF--TDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYP 394 (508)
T ss_pred c--hhhcccccceEEEeccccchhHHHhcCccccccceEE--cCCCCeEEEecCCccEEEecCcchhhhhhccCCCCccc
Confidence 9 5899999999999999999999999999999999986 56778999999999999999999988887765432 4
Q ss_pred eEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccC-CCCCCcCeEEEcCCCCEEE
Q 001248 556 CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD-GGLPASPRIRFNKDGCLLA 634 (1114)
Q Consensus 556 v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~ 634 (1114)
|.++..-|... ..++++...++|+|.++ .|+.++.+... ...+...+.+.||.|.+++
T Consensus 395 vnsv~~~PKnp--------------------eh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiY 453 (508)
T KOG0275|consen 395 VNSVILLPKNP--------------------EHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIY 453 (508)
T ss_pred ceeEEEcCCCC--------------------ceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEE
Confidence 44444444332 46888889999999998 57778777532 2234567889999999999
Q ss_pred EEeCCCcEEEEEccCCccceeec
Q 001248 635 VSTNDNGIKILATSDGIRLLRTF 657 (1114)
Q Consensus 635 ~~~~dg~i~iwd~~~~~~~~~~~ 657 (1114)
+.+.|+.++.+...+| ..-+.+
T Consensus 454 cigED~vlYCF~~~sG-~LE~tl 475 (508)
T KOG0275|consen 454 CIGEDGVLYCFSVLSG-KLERTL 475 (508)
T ss_pred EEccCcEEEEEEeecC-ceeeee
Confidence 9999999999998888 444444
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-56 Score=475.89 Aligned_cols=574 Identities=15% Similarity=0.229 Sum_probs=473.0
Q ss_pred EEEcCCCCeEEEEEecCCcEEEEEcCCccee-EEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCC
Q 001248 364 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERL-VLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH 442 (1114)
Q Consensus 364 v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg 442 (1114)
++|+++|+. |++.. ...|.+-|+.++... .. .-......+++++.+||+++|++++..+
T Consensus 25 ~~~s~nG~~-L~t~~-~d~Vi~idv~t~~~~l~s------------------~~~ed~d~ita~~l~~d~~~L~~a~rs~ 84 (775)
T KOG0319|consen 25 VAWSSNGQH-LYTAC-GDRVIIIDVATGSIALPS------------------GSNEDEDEITALALTPDEEVLVTASRSQ 84 (775)
T ss_pred eeECCCCCE-EEEec-CceEEEEEccCCceeccc------------------CCccchhhhheeeecCCccEEEEeeccc
Confidence 899999995 88765 346888999998763 21 1234556899999999999999999999
Q ss_pred eEEEEEccCCceeeeeEeecc-ccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCC
Q 001248 443 IVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE 521 (1114)
Q Consensus 443 ~i~iwd~~~~~~~~~~~~l~~-h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 521 (1114)
.+++|++.+++.++ .+.. |.++|.-++|.|.+. ++++|+.|+.++|||+..+.+.+.|+||.+.|.++.|++..
T Consensus 85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence 99999999998776 5666 999999999999997 89999999999999999999999999999999999999998
Q ss_pred CceEEEEEecCCeEEEEEcCCCCC-eeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEE
Q 001248 522 NIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF 600 (1114)
Q Consensus 522 ~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 600 (1114)
+...|++|+.|+++++||+.+... ...+..|...|+++.+++|+. .+++++.|..+.+
T Consensus 160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~---------------------~~ls~~RDkvi~v 218 (775)
T KOG0319|consen 160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSL---------------------ELLSVGRDKVIIV 218 (775)
T ss_pred chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCc---------------------eEEEeccCcEEEE
Confidence 888899999999999999996554 667788888899998888865 6999999999999
Q ss_pred EECCCcceEEEeccCCCCCCcCeEEEcCC-----CCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCc
Q 001248 601 WDMDSVQLLTSIDADGGLPASPRIRFNKD-----GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTI 675 (1114)
Q Consensus 601 wd~~~~~~~~~~~~~~~~~~v~~~~~s~d-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (1114)
||+.+-+...+++.... +-++.+-++ |.++++++.+|.+++||.+++ ...........+ .+
T Consensus 219 wd~~~~~~l~~lp~ye~---~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~-~~~~~~~~~~~~----------e~ 284 (775)
T KOG0319|consen 219 WDLVQYKKLKTLPLYES---LESVVRLREELGGKGEYIITAGGSGVVQYWDSESG-KCVYKQRQSDSE----------EI 284 (775)
T ss_pred eehhhhhhhheechhhh---eeeEEEechhcCCcceEEEEecCCceEEEEecccc-hhhhhhccCCch----------hh
Confidence 99988777777765543 566777776 679999999999999999988 333322211100 00
Q ss_pred cchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceE
Q 001248 676 SPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKIS 755 (1114)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~ 755 (1114)
...........++....+..+.++|.++......+. +..+.|.
T Consensus 285 ------------------------------~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~iv-------G~ndEI~ 327 (775)
T KOG0319|consen 285 ------------------------------DHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIV-------GYNDEIL 327 (775)
T ss_pred ------------------------------hcceeccccCceEEEEccceEEEEEccccEEehhhc-------CCchhhe
Confidence 011112234556677778899999887755444433 4678899
Q ss_pred EEEE-ccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEE
Q 001248 756 RLIF-TNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM 834 (1114)
Q Consensus 756 ~l~~-s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~ 834 (1114)
++.| .|+.+.+++++..+.+|+|++..... . .+. +|...|.++....+|-+|+
T Consensus 328 Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c----------------------~--ii~--GH~e~vlSL~~~~~g~lla 381 (775)
T KOG0319|consen 328 DMKFLGPEESHLAVATNSPELRLYTLPTSYC----------------------Q--IIP--GHTEAVLSLDVWSSGDLLA 381 (775)
T ss_pred eeeecCCccceEEEEeCCCceEEEecCCCce----------------------E--EEe--CchhheeeeeecccCcEEE
Confidence 9887 56778899999999999997653211 1 133 3999999999888889999
Q ss_pred EEe-CCeEEEEEcCCC----ccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceE-----E----Eeecc
Q 001248 835 SAS-GGKISLFNMMTF----KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV-----K----SKLKG 900 (1114)
Q Consensus 835 ~~~-dg~i~iwd~~~~----~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~-----~----~~l~~ 900 (1114)
+++ |.++++|.++.+ .++....+|.+.|.+++++.....+|++++.|+++++|++...+. . .....
T Consensus 382 t~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~a 461 (775)
T KOG0319|consen 382 TGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERA 461 (775)
T ss_pred EecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHh
Confidence 999 999999987432 345567899999999999986678999999999999999976221 1 13357
Q ss_pred cccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEE
Q 001248 901 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFE 979 (1114)
Q Consensus 901 h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd 979 (1114)
|...|++|+.+|+.+++|+||.|++.+||+++. ......+.||.. .+.++.|+|..+.+++ ++|++|+||.
T Consensus 462 HdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~-----~~l~~vLsGH~R---Gvw~V~Fs~~dq~laT~SgD~TvKIW~ 533 (775)
T KOG0319|consen 462 HDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ-----LRLLGVLSGHTR---GVWCVSFSKNDQLLATCSGDKTVKIWS 533 (775)
T ss_pred hcccccceEecCCCceEEecccccceeeecccC-----ceEEEEeeCCcc---ceEEEEeccccceeEeccCCceEEEEE
Confidence 999999999999999999999999999999995 345777888885 8999999999999999 6999999999
Q ss_pred cCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCC
Q 001248 980 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1059 (1114)
Q Consensus 980 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d 1059 (1114)
+.+..|++++. ||...|..+.|-.+|+.|++++.||.|++|++.++++++.+. +|.+. |+ +++-++ +
T Consensus 534 is~fSClkT~e--GH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD-------~H~Dr-vW--aL~~~~-~ 600 (775)
T KOG0319|consen 534 ISTFSCLKTFE--GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLD-------AHNDR-VW--ALSVSP-L 600 (775)
T ss_pred eccceeeeeec--CccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhh-------hccce-eE--EEeecC-c
Confidence 99999999997 999999999999999999999999999999999999999887 55444 78 666667 4
Q ss_pred CCeEEEEeCCCcEEEEeccCCC
Q 001248 1060 PNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1060 ~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
...++||+.||.|.+|.=.+.+
T Consensus 601 ~~~~~tgg~Dg~i~~wkD~Te~ 622 (775)
T KOG0319|consen 601 LDMFVTGGGDGRIIFWKDVTEE 622 (775)
T ss_pred cceeEecCCCeEEEEeecCcHH
Confidence 6799999999999999866654
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-55 Score=469.41 Aligned_cols=546 Identities=14% Similarity=0.194 Sum_probs=453.6
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccC-CCCCeeEEEEcCCCCeE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD-PGVSVNRVIWSPDGSLF 435 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-h~~~V~~l~~spdg~~l 435 (1114)
..+.+++++.+||+++ |++++..+.+++|++.+|+.+. .++. |+++|.-++|+|.|.+|
T Consensus 61 d~d~ita~~l~~d~~~-L~~a~rs~llrv~~L~tgk~ir-------------------swKa~He~Pvi~ma~~~~g~Ll 120 (775)
T KOG0319|consen 61 DEDEITALALTPDEEV-LVTASRSQLLRVWSLPTGKLIR-------------------SWKAIHEAPVITMAFDPTGTLL 120 (775)
T ss_pred chhhhheeeecCCccE-EEEeeccceEEEEEcccchHhH-------------------hHhhccCCCeEEEEEcCCCceE
Confidence 5678999999999995 8899999999999999997765 2444 99999999999999999
Q ss_pred EEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCc-ceeEeeccccCEEE
Q 001248 436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFEGHEAPVYS 514 (1114)
Q Consensus 436 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~h~~~v~~ 514 (1114)
|+|+.|+.|+|||+..+.+.. .|.||.+.|.++.|.|+-...+|++|+.|+++++||+.+.. ++.++..|.+.|++
T Consensus 121 AtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vts 197 (775)
T KOG0319|consen 121 ATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTS 197 (775)
T ss_pred EeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheee
Confidence 999999999999999998777 79999999999999999886679999999999999999554 58889999999999
Q ss_pred EeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeC
Q 001248 515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 594 (1114)
Q Consensus 515 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 594 (1114)
++|.++ +..++++|.|..+.+||+...+....++.. ..+.++.+-+++. ...+.+++++++
T Consensus 198 L~~~~d--~~~~ls~~RDkvi~vwd~~~~~~l~~lp~y-e~~E~vv~l~~~~----------------~~~~~~~~TaG~ 258 (775)
T KOG0319|consen 198 LAFSED--SLELLSVGRDKVIIVWDLVQYKKLKTLPLY-ESLESVVRLREEL----------------GGKGEYIITAGG 258 (775)
T ss_pred eeeccC--CceEEEeccCcEEEEeehhhhhhhheechh-hheeeEEEechhc----------------CCcceEEEEecC
Confidence 997654 578999999999999999665554444322 2344555544411 111458999999
Q ss_pred CCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCC
Q 001248 595 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 674 (1114)
Q Consensus 595 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (1114)
+|.+++||..+++++........ ..+..+...+....++..+.|..+.++|..+. +..+.+-|....+. .
T Consensus 259 ~g~~~~~d~es~~~~~~~~~~~~-~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l-~i~k~ivG~ndEI~--------D 328 (775)
T KOG0319|consen 259 SGVVQYWDSESGKCVYKQRQSDS-EEIDHLLAIESMSQLLLVTAEQNLFLYDEDEL-TIVKQIVGYNDEIL--------D 328 (775)
T ss_pred CceEEEEecccchhhhhhccCCc-hhhhcceeccccCceEEEEccceEEEEEcccc-EEehhhcCCchhhe--------e
Confidence 99999999999988776654432 23666666666667777788899999999888 77777777776655 2
Q ss_pred ccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccce
Q 001248 675 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 754 (1114)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i 754 (1114)
+...+ ++...++.++....+++|+..+.... .+ .+|...|
T Consensus 329 m~~lG--------------------------------~e~~~laVATNs~~lr~y~~~~~~c~----ii----~GH~e~v 368 (775)
T KOG0319|consen 329 MKFLG--------------------------------PEESHLAVATNSPELRLYTLPTSYCQ----II----PGHTEAV 368 (775)
T ss_pred eeecC--------------------------------CccceEEEEeCCCceEEEecCCCceE----EE----eCchhhe
Confidence 33333 56788999999999999987764433 22 4699999
Q ss_pred EEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCC-CEE
Q 001248 755 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND-SYV 833 (1114)
Q Consensus 755 ~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~-~~l 833 (1114)
.++....+|..|++++.|.++++|.++.+..... ++ -...+|.+.|.+++++..+ .++
T Consensus 369 lSL~~~~~g~llat~sKD~svilWr~~~~~~~~~------------------~~---a~~~gH~~svgava~~~~~asff 427 (775)
T KOG0319|consen 369 LSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSL------------------CV---AQANGHTNSVGAVAGSKLGASFF 427 (775)
T ss_pred eeeeecccCcEEEEecCCceEEEEEecCCcchhh------------------hh---hhhcccccccceeeecccCccEE
Confidence 9999888889999999999999998843211100 01 1223599999999998765 478
Q ss_pred EEEe-CCeEEEEEcCCCc---------cccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeeccccc
Q 001248 834 MSAS-GGKISLFNMMTFK---------TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 903 (1114)
Q Consensus 834 ~~~~-dg~i~iwd~~~~~---------~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~ 903 (1114)
++++ |.++++|++...+ +..+...|...|++++++| +..++|+|+.|.+.+||+++.+++..++.||..
T Consensus 428 vsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~R 506 (775)
T KOG0319|consen 428 VSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTR 506 (775)
T ss_pred EEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEEEeeCCcc
Confidence 8888 9999999997521 1123457999999999999 889999999999999999999999999999999
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCC
Q 001248 904 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTK 982 (1114)
Q Consensus 904 ~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~ 982 (1114)
.|++|.|+|..+.|||+|.|+||+||.+++ ..|++.+.||.. .|..+.|-.+|+.|++ +.||-+++|++++
T Consensus 507 Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~-----fSClkT~eGH~~---aVlra~F~~~~~qliS~~adGliKlWnikt 578 (775)
T KOG0319|consen 507 GVWCVSFSKNDQLLATCSGDKTVKIWSIST-----FSCLKTFEGHTS---AVLRASFIRNGKQLISAGADGLIKLWNIKT 578 (775)
T ss_pred ceEEEEeccccceeEeccCCceEEEEEecc-----ceeeeeecCccc---eeEeeeeeeCCcEEEeccCCCcEEEEeccc
Confidence 999999999999999999999999999998 567899999985 8999999999999999 6999999999999
Q ss_pred CceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCC
Q 001248 983 LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1026 (1114)
Q Consensus 983 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~ 1026 (1114)
++|..++. .|...|++++.++++.++++|+.||.|.+|.=.|
T Consensus 579 ~eC~~tlD--~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 579 NECEMTLD--AHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred hhhhhhhh--hccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 99999876 8999999999999999999999999999996443
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-50 Score=414.70 Aligned_cols=579 Identities=14% Similarity=0.149 Sum_probs=437.1
Q ss_pred CCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEE
Q 001248 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 438 (1114)
Q Consensus 359 ~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 438 (1114)
+.-.-+.-.|.|..+|.+. ...|.+-++++..... ++.+|...++-..|||.|-|+|+|
T Consensus 19 g~~~~ig~dpkgd~ilY~n--Gksv~ir~i~~~~~~~-------------------iYtEH~~~vtVAkySPsG~yiASG 77 (603)
T KOG0318|consen 19 GVPIIIGGDPKGDNILYTN--GKSVIIRNIDNPASVD-------------------IYTEHAHQVTVAKYSPSGFYIASG 77 (603)
T ss_pred CcceEeccCCCCCeEEEeC--CCEEEEEECCCcccee-------------------eeccccceeEEEEeCCCceEEeec
Confidence 3445566678888877764 4678888888765543 578999999999999999999999
Q ss_pred eCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEe-cCCCCEEEEeCCCCcceeEeeccccCEEEEee
Q 001248 439 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC-GDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 517 (1114)
Q Consensus 439 ~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 517 (1114)
...|+|+|||....+.+ ...+++.-.++|..++|+.|+++ ++++| +.++..+++-+++|.-+..+.||...|+++.|
T Consensus 78 D~sG~vRIWdtt~~~hi-LKnef~v~aG~I~Di~Wd~ds~R-I~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~ 155 (603)
T KOG0318|consen 78 DVSGKVRIWDTTQKEHI-LKNEFQVLAGPIKDISWDFDSKR-IAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDF 155 (603)
T ss_pred CCcCcEEEEeccCccee-eeeeeeecccccccceeCCCCcE-EEEEecCccceeEEEEecCCCccceeeccceeEeeeec
Confidence 99999999998764433 22367778899999999999996 33343 33444444444578889999999999999998
Q ss_pred ccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCe
Q 001248 518 HHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS 597 (1114)
Q Consensus 518 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 597 (1114)
-++.. -.+++|+.|++|.+|+-...+-..++..|...|.++.| +|||.++++++.||.
T Consensus 156 KpsRP-fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRy---------------------sPDG~~Fat~gsDgk 213 (603)
T KOG0318|consen 156 KPSRP-FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRY---------------------SPDGSRFATAGSDGK 213 (603)
T ss_pred cCCCc-eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEE---------------------CCCCCeEEEecCCcc
Confidence 77654 57999999999999975544444444455555555554 555558999999999
Q ss_pred EEEEECCCcceEEEec-cCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCcc
Q 001248 598 IKFWDMDSVQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTIS 676 (1114)
Q Consensus 598 i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (1114)
|.+||-.+|+.+..+. ...|.+.|.+++|+||++.+++++.|.+++|||+.+. .+.+.+.-....
T Consensus 214 i~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~-slv~t~~~~~~v------------- 279 (603)
T KOG0318|consen 214 IYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTN-SLVSTWPMGSTV------------- 279 (603)
T ss_pred EEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeecc-ceEEEeecCCch-------------
Confidence 9999999999999997 3445668999999999999999999999999999988 565555321110
Q ss_pred chhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEE
Q 001248 677 PISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISR 756 (1114)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~ 756 (1114)
-.......+....|++.+.+|.+.+++.......... .+|...|++
T Consensus 280 ---------------------------~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i-------~GHnK~ITa 325 (603)
T KOG0318|consen 280 ---------------------------EDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVI-------SGHNKSITA 325 (603)
T ss_pred ---------------------------hceEEEEEEeCCeEEEEEcCcEEEEecccCCChhhee-------cccccceeE
Confidence 0111223445788999999999999998876533222 469999999
Q ss_pred EEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEE
Q 001248 757 LIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA 836 (1114)
Q Consensus 757 l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~ 836 (1114)
+..++++++|++++.||.|.-|+...+.. - .+.+..|...|.+++.+..+.++.++
T Consensus 326 Ltv~~d~~~i~SgsyDG~I~~W~~~~g~~----------------------~--~~~g~~h~nqI~~~~~~~~~~~~t~g 381 (603)
T KOG0318|consen 326 LTVSPDGKTIYSGSYDGHINSWDSGSGTS----------------------D--RLAGKGHTNQIKGMAASESGELFTIG 381 (603)
T ss_pred EEEcCCCCEEEeeccCceEEEEecCCccc----------------------c--ccccccccceEEEEeecCCCcEEEEe
Confidence 99999999999999999999998653321 1 13334599999999999888888888
Q ss_pred eCCeEEEEEcCCCccccc--cCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCC
Q 001248 837 SGGKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL 914 (1114)
Q Consensus 837 ~dg~i~iwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~ 914 (1114)
-|.++++.++........ ++- .....+++..+ ++.+++..+.++.+.+=|...-. ... -.-...+++++|++
T Consensus 382 ~Dd~l~~~~~~~~~~t~~~~~~l-g~QP~~lav~~-d~~~avv~~~~~iv~l~~~~~~~---~~~-~~y~~s~vAv~~~~ 455 (603)
T KOG0318|consen 382 WDDTLRVISLKDNGYTKSEVVKL-GSQPKGLAVLS-DGGTAVVACISDIVLLQDQTKVS---SIP-IGYESSAVAVSPDG 455 (603)
T ss_pred cCCeEEEEecccCcccccceeec-CCCceeEEEcC-CCCEEEEEecCcEEEEecCCcce---eec-cccccceEEEcCCC
Confidence 899999999865433322 121 22234888888 66677767666555544443221 211 22346789999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCeEEEEEcCCCceeeeeecCC
Q 001248 915 NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRE 993 (1114)
Q Consensus 915 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~ 993 (1114)
..+|.|+.|+.|+||.+...+......+. .|. +.|+.++||||+.|||++ ..+.+.+||..+.+.... .-.-
T Consensus 456 ~~vaVGG~Dgkvhvysl~g~~l~ee~~~~---~h~---a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~-~w~F 528 (603)
T KOG0318|consen 456 SEVAVGGQDGKVHVYSLSGDELKEEAKLL---EHR---AAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTN-RWAF 528 (603)
T ss_pred CEEEEecccceEEEEEecCCcccceeeee---ccc---CCceEEEECCCCcEEEEeccCCcEEEEEcccCceecc-eeee
Confidence 99999999999999999986643322221 222 589999999999999996 678999999998877322 2225
Q ss_pred CCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEE
Q 001248 994 SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVH 1073 (1114)
Q Consensus 994 h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~ 1073 (1114)
|...|.+++|+|+.+++|+|+.|.+|.||+++.-.....++ ..|... |+ .+.|. |...|++.+.|.+|+
T Consensus 529 HtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ik------nAH~~g-Vn--~v~wl--de~tvvSsG~Da~iK 597 (603)
T KOG0318|consen 529 HTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIK------NAHLGG-VN--SVAWL--DESTVVSSGQDANIK 597 (603)
T ss_pred eeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEec------cccccC-ce--eEEEe--cCceEEeccCcceeE
Confidence 89999999999999999999999999999998776664444 222233 66 88888 578999999999999
Q ss_pred EEecc
Q 001248 1074 VFEPL 1078 (1114)
Q Consensus 1074 vW~i~ 1078 (1114)
+|.+.
T Consensus 598 ~W~v~ 602 (603)
T KOG0318|consen 598 VWNVT 602 (603)
T ss_pred Eeccc
Confidence 99975
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-50 Score=429.68 Aligned_cols=571 Identities=18% Similarity=0.296 Sum_probs=443.5
Q ss_pred EeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCC
Q 001248 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1114)
..+.+...|++++.||+|.. |++....|.+.+-++.....++.++| ..+|.|+.|||||
T Consensus 50 l~~e~~~NI~~ialSp~g~l-llavdE~g~~~lvs~~~r~Vlh~f~f--------------------k~~v~~i~fSPng 108 (893)
T KOG0291|consen 50 LPLETRYNITRIALSPDGTL-LLAVDERGRALLVSLLSRSVLHRFNF--------------------KRGVGAIKFSPNG 108 (893)
T ss_pred EEeecCCceEEEEeCCCceE-EEEEcCCCcEEEEecccceeeEEEee--------------------cCccceEEECCCC
Confidence 44458899999999999995 66678889999999988877765444 3489999999999
Q ss_pred CeEEEEeCCCeEEEEEccCCce-----eeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcc--eeEe
Q 001248 433 SLFGVAYSRHIVQIYSYHGGDE-----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK--QYIF 505 (1114)
Q Consensus 433 ~~las~~~dg~i~iwd~~~~~~-----~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~ 505 (1114)
+++|.|.. +.+.||....... .....++.+|-..|.++.|+.|.+ +|++|+.|.++++|+++..+- .+.+
T Consensus 109 ~~fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr--~l~~gsrD~s~rl~~v~~~k~~~~~~l 185 (893)
T KOG0291|consen 109 KFFAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR--LLVTGSRDLSARLFGVDGNKNLFTYAL 185 (893)
T ss_pred cEEEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc--eEEeccccceEEEEEeccccccceEec
Confidence 99998864 5699998765332 234456789999999999999999 899999999999999986655 5678
Q ss_pred eccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeee-----cC---------CCCeeEEEEEecCCCeEEee
Q 001248 506 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-----EA---------PGRWCTTMAYSADGTRTYQG 571 (1114)
Q Consensus 506 ~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-----~~---------~~~~v~~~~~s~~g~~~~~~ 571 (1114)
.+|.+.|.+.-|.. +...+++.+.||.+.+|.....-....- .+ ....+....|..-. +.+-.
T Consensus 186 ~gHkd~VvacfF~~--~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~-k~~ln 262 (893)
T KOG0291|consen 186 NGHKDYVVACFFGA--NSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTK-KHYLN 262 (893)
T ss_pred cCCCcceEEEEecc--CcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEE-eeeec
Confidence 99999998877643 4467999999999999987732111000 00 00011111111111 11112
Q ss_pred ecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCC-CcEEEEEccCC
Q 001248 572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-NGIKILATSDG 650 (1114)
Q Consensus 572 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d-g~i~iwd~~~~ 650 (1114)
.....+.+.+|++..+.|+++-..|...+|++....+++.+....+ .|..++|+..|.+|+.|+.. |.+.+|+..+.
T Consensus 263 ~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~--~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE 340 (893)
T KOG0291|consen 263 QNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQ--KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE 340 (893)
T ss_pred ccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccc--eeeEEEecccCCEEEEcCCccceEEEEEeecc
Confidence 2235788999999999999999999999999999999999986644 79999999999999998764 78999987655
Q ss_pred ccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEE
Q 001248 651 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 730 (1114)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~ 730 (1114)
. .+-
T Consensus 341 s-YVl--------------------------------------------------------------------------- 344 (893)
T KOG0291|consen 341 S-YVL--------------------------------------------------------------------------- 344 (893)
T ss_pred c-eee---------------------------------------------------------------------------
Confidence 1 111
Q ss_pred eccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccc
Q 001248 731 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 810 (1114)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~ 810 (1114)
..++|...+.+++++|||.+++++++||.|+|||.. +|.+...
T Consensus 345 ---------------KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~----------------------SgfC~vT 387 (893)
T KOG0291|consen 345 ---------------KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ----------------------SGFCFVT 387 (893)
T ss_pred ---------------eccccccceeeEEECCCCcEEEeccCCCcEEEEecc----------------------CceEEEE
Confidence 113488899999999999999999999999998765 4544432
Q ss_pred cCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCC-CeEEEEEecCCCcEEEEEeCCC-cEEEE
Q 001248 811 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNIIAIGMDDS-SIQIY 887 (1114)
Q Consensus 811 ~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~-~i~~l~~sp~d~~~la~g~~dg-~v~iw 887 (1114)
+. .|.+.|+.+.|+.+|+.+++.+ ||+|+.||+......+++..... ...|++..| .|.++.+|+.|. .|+||
T Consensus 388 -Ft--eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~-sGelV~AG~~d~F~IfvW 463 (893)
T KOG0291|consen 388 -FT--EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVW 463 (893)
T ss_pred -ec--cCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEEE
Confidence 22 3999999999999999999999 99999999999999999875433 467888988 899999998776 79999
Q ss_pred EcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEE
Q 001248 888 NVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 967 (1114)
Q Consensus 888 d~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l 967 (1114)
++++|+++..+.||.++|.+++|+|++..|||+|.|.||++||+-..... .+.+... ..+..++|+|||+.|
T Consensus 464 S~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~-vEtl~i~-------sdvl~vsfrPdG~el 535 (893)
T KOG0291|consen 464 SVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGT-VETLEIR-------SDVLAVSFRPDGKEL 535 (893)
T ss_pred EeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCce-eeeEeec-------cceeEEEEcCCCCeE
Confidence 99999999999999999999999999999999999999999998764221 1222222 367999999999999
Q ss_pred EE-EeCCeEEEEEcCCCceeeeeec------------------CCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCe
Q 001248 968 LV-VHETQLAIFETTKLECVKQWVP------------------RESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1028 (1114)
Q Consensus 968 ~~-~~d~~i~iwd~~~~~~~~~~~~------------------~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~ 1028 (1114)
++ .-||+|.+||.+.+..+..+.. .......+.+++|+||.+|++|+....|++|++.++-
T Consensus 536 aVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~v 615 (893)
T KOG0291|consen 536 AVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGV 615 (893)
T ss_pred EEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhh
Confidence 99 5899999999987766544321 1124678999999999999999999999999999998
Q ss_pred eeEEeCCCcc----------------------------------------------cCCCCCCCCccceEEEecCCCCCe
Q 001248 1029 LRCRINPSAY----------------------------------------------LPAGVSSSNVHPLVIAAHPQEPNE 1062 (1114)
Q Consensus 1029 ~~~~~~~~~~----------------------------------------------~~~~~~~~~v~~~~~~~~~~d~~~ 1062 (1114)
++.++..+.. +...+....|.+.++.|+|. |+-
T Consensus 616 llkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPt-gra 694 (893)
T KOG0291|consen 616 LLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPT-GRA 694 (893)
T ss_pred eeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECCC-cCe
Confidence 7776652210 00012233577789999995 788
Q ss_pred EEEEeCCCcEEEEeccC
Q 001248 1063 FALGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1063 l~s~~~Dg~v~vW~i~~ 1079 (1114)
++.++..| |.++.+.+
T Consensus 695 FAaatTEG-l~IYsld~ 710 (893)
T KOG0291|consen 695 FAAATTEG-LLIYSLDT 710 (893)
T ss_pred eeeecccc-eEEEecCC
Confidence 88777666 35555543
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-53 Score=419.39 Aligned_cols=374 Identities=20% Similarity=0.342 Sum_probs=299.7
Q ss_pred CCCCCCcceeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCC
Q 001248 343 TPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVS 422 (1114)
Q Consensus 343 ~~~~~~~~~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~ 422 (1114)
.......+....-+|.+.|-|++|+|+|++ ||+|+.|.++++||+.+..... +.++|...
T Consensus 100 rvrpvtrCssS~~GH~e~Vl~~~fsp~g~~-l~tGsGD~TvR~WD~~TeTp~~-------------------t~KgH~~W 159 (480)
T KOG0271|consen 100 RVRPVTRCSSSIAGHGEAVLSVQFSPTGSR-LVTGSGDTTVRLWDLDTETPLF-------------------TCKGHKNW 159 (480)
T ss_pred cccccceeccccCCCCCcEEEEEecCCCce-EEecCCCceEEeeccCCCCcce-------------------eecCCccE
Confidence 333444445555669999999999999997 9999999999999999876655 58999999
Q ss_pred eeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecC-----CCCeeEEEEecCCCCEEEEeCC
Q 001248 423 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-----PNKQLCVITCGDDKTIKVWDAT 497 (1114)
Q Consensus 423 V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-----d~~~~~l~s~~~d~~i~iwd~~ 497 (1114)
|.|++|||||+.||+|+.||+|++||.++|+++.. .|.+|...|++++|-| ..+ +|++++.||+|+|||+.
T Consensus 160 VlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd~~ 235 (480)
T KOG0271|consen 160 VLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWDTK 235 (480)
T ss_pred EEEEEECCCcchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEEcc
Confidence 99999999999999999999999999999987765 6889999999999965 455 79999999999999999
Q ss_pred CCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccce
Q 001248 498 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 577 (1114)
Q Consensus 498 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v 577 (1114)
.+.++..+.||..+|+|++|-. + .++++|+.|++|++|+...+.....+.+|.+.|..++.+.|--
T Consensus 236 ~~~~~~~lsgHT~~VTCvrwGG--~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~----------- 301 (480)
T KOG0271|consen 236 LGTCVRTLSGHTASVTCVRWGG--E-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYV----------- 301 (480)
T ss_pred CceEEEEeccCccceEEEEEcC--C-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhh-----------
Confidence 9999999999999999999842 2 4999999999999999999889999999999999998877642
Q ss_pred eEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeec
Q 001248 578 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657 (1114)
Q Consensus 578 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 657 (1114)
|-+|..|.+=+-....+......+.. .....-..+..|++|+.|.++.+|+....++.
T Consensus 302 -----------LRtgaf~~t~~~~~~~se~~~~Al~r-------Y~~~~~~~~erlVSgsDd~tlflW~p~~~kkp---- 359 (480)
T KOG0271|consen 302 -----------LRTGAFDHTGRKPKSFSEEQKKALER-------YEAVLKDSGERLVSGSDDFTLFLWNPFKSKKP---- 359 (480)
T ss_pred -----------hhccccccccccCCChHHHHHHHHHH-------HHHhhccCcceeEEecCCceEEEecccccccc----
Confidence 22222221100000000000000000 00001112344555555555555543211111
Q ss_pred cccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCC
Q 001248 658 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP 737 (1114)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~ 737 (1114)
T Consensus 360 -------------------------------------------------------------------------------- 359 (480)
T KOG0271|consen 360 -------------------------------------------------------------------------------- 359 (480)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCC
Q 001248 738 NQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP 817 (1114)
Q Consensus 738 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~ 817 (1114)
+.+ +. +|
T Consensus 360 ----------------------------------------------------------------------i~r-mt--gH 366 (480)
T KOG0271|consen 360 ----------------------------------------------------------------------ITR-MT--GH 366 (480)
T ss_pred ----------------------------------------------------------------------hhh-hh--ch
Confidence 100 11 38
Q ss_pred CCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEE
Q 001248 818 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 896 (1114)
Q Consensus 818 ~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~ 896 (1114)
..-|..+.||||++++|+++ |..|++|+..+|+.+.+|++|-..|..++|+. |.++|++|+.|.++++||+.+.++..
T Consensus 367 q~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~tkKl~~ 445 (480)
T KOG0271|consen 367 QALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRTKKLKQ 445 (480)
T ss_pred hhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEEEEEeeeeeecc
Confidence 88899999999999999999 99999999999999999999999999999999 99999999999999999999999999
Q ss_pred eecccccCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 001248 897 KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930 (1114)
Q Consensus 897 ~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd 930 (1114)
.+.||.++|.++.|+|||..+++|+.|+.+++|.
T Consensus 446 DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 446 DLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred cCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999999999999999999999999999999994
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=401.64 Aligned_cols=541 Identities=17% Similarity=0.214 Sum_probs=426.8
Q ss_pred ceeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEc
Q 001248 350 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 429 (1114)
Q Consensus 350 ~~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 429 (1114)
.+...-.|...++-..|||.|-| +|+|...|+|+|||....+.+....|+ .-.++|..++|+
T Consensus 51 ~~~iYtEH~~~vtVAkySPsG~y-iASGD~sG~vRIWdtt~~~hiLKnef~-----------------v~aG~I~Di~Wd 112 (603)
T KOG0318|consen 51 SVDIYTEHAHQVTVAKYSPSGFY-IASGDVSGKVRIWDTTQKEHILKNEFQ-----------------VLAGPIKDISWD 112 (603)
T ss_pred ceeeeccccceeEEEEeCCCceE-EeecCCcCcEEEEeccCcceeeeeeee-----------------ecccccccceeC
Confidence 34455569999999999999996 999999999999999876555444433 335599999999
Q ss_pred CCCCeEEEEeCC----CeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEe
Q 001248 430 PDGSLFGVAYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 505 (1114)
Q Consensus 430 pdg~~las~~~d----g~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 505 (1114)
+|+++|++.+.. |.+.+|| +|..+. ++.||...|++++|-|.-.+ .++||++|++|.+|+=.--+...++
T Consensus 113 ~ds~RI~avGEGrerfg~~F~~D--SG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~ 186 (603)
T KOG0318|consen 113 FDSKRIAAVGEGRERFGHVFLWD--SGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSF 186 (603)
T ss_pred CCCcEEEEEecCccceeEEEEec--CCCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeecc
Confidence 999999988653 3455565 555455 78999999999999998776 7999999999999986555666788
Q ss_pred eccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeec---CCCCeeEEEEEecCCCeEEeeecccceeEEEe
Q 001248 506 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE---APGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 582 (1114)
Q Consensus 506 ~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~---~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~ 582 (1114)
..|...|.++.|+ |||.++++.+.||++.+||-.+++....+. +|.+.|.+++|+||++
T Consensus 187 r~HskFV~~VRys--PDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~---------------- 248 (603)
T KOG0318|consen 187 REHSKFVNCVRYS--PDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDST---------------- 248 (603)
T ss_pred cccccceeeEEEC--CCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCc----------------
Confidence 8899999999975 557899999999999999999998888776 6777777777777766
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCC-CCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccc
Q 001248 583 DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL-PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA 661 (1114)
Q Consensus 583 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 661 (1114)
.+++++.|.+++|||+.+.+++.++...... .....+-|- ...|++.+.+|+|.+++...+. ..+.+.+|.
T Consensus 249 -----~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~-~~~~i~GHn 320 (603)
T KOG0318|consen 249 -----QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPS-VLKVISGHN 320 (603)
T ss_pred -----eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCC-hhheecccc
Confidence 7999999999999999999999998754431 223345554 6678999999999999999994 889999998
Q ss_pred cccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCcccc
Q 001248 662 YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCR 741 (1114)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~ 741 (1114)
..+... ...+++.++++++.||.|.-|+...+......
T Consensus 321 K~ITaL-----------------------------------------tv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~- 358 (603)
T KOG0318|consen 321 KSITAL-----------------------------------------TVSPDGKTIYSGSYDGHINSWDSGSGTSDRLA- 358 (603)
T ss_pred cceeEE-----------------------------------------EEcCCCCEEEeeccCceEEEEecCCccccccc-
Confidence 865532 23457799999999999999999876544332
Q ss_pred ccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCc
Q 001248 742 SLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAV 821 (1114)
Q Consensus 742 ~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v 821 (1114)
...|...|.+++.+..+. +++.+.|.++++.++......... .. ......
T Consensus 359 -----g~~h~nqI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~~~-----------------~~-------~lg~QP 408 (603)
T KOG0318|consen 359 -----GKGHTNQIKGMAASESGE-LFTIGWDDTLRVISLKDNGYTKSE-----------------VV-------KLGSQP 408 (603)
T ss_pred -----cccccceEEEEeecCCCc-EEEEecCCeEEEEecccCcccccc-----------------ee-------ecCCCc
Confidence 245899999999988776 778888889998876533221110 00 023445
Q ss_pred cEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEE--Eeec
Q 001248 822 PCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK--SKLK 899 (1114)
Q Consensus 822 ~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~--~~l~ 899 (1114)
.+++..+|+.+++..+++.|.+..-.+ .+.+.. ..-...++|++| ++..+|+|+.||.|+||.+..+.+. ..+.
T Consensus 409 ~~lav~~d~~~avv~~~~~iv~l~~~~--~~~~~~-~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~ 484 (603)
T KOG0318|consen 409 KGLAVLSDGGTAVVACISDIVLLQDQT--KVSSIP-IGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLL 484 (603)
T ss_pred eeEEEcCCCCEEEEEecCcEEEEecCC--cceeec-cccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeee
Confidence 589999999888888877777665322 222222 334578999999 9999999999999999999876543 4567
Q ss_pred ccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEE
Q 001248 900 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIF 978 (1114)
Q Consensus 900 ~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iw 978 (1114)
.|.++|++++||||+.+||+|...+.+.+||+.+.+... ....-|. ..|.+++|+|+.+++|+ +-|..|.||
T Consensus 485 ~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~----~~w~FHt---akI~~~aWsP~n~~vATGSlDt~Viiy 557 (603)
T KOG0318|consen 485 EHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKT----NRWAFHT---AKINCVAWSPNNKLVATGSLDTNVIIY 557 (603)
T ss_pred cccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceec----ceeeeee---eeEEEEEeCCCceEEEeccccceEEEE
Confidence 799999999999999999999999999999999976521 1122233 47999999999999999 589999999
Q ss_pred EcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcC
Q 001248 979 ETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA 1025 (1114)
Q Consensus 979 d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~ 1025 (1114)
+++.-... .....+|...|+.+.|- |...|++.+.|..|++|++.
T Consensus 558 sv~kP~~~-i~iknAH~~gVn~v~wl-de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 558 SVKKPAKH-IIIKNAHLGGVNSVAWL-DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred EccChhhh-eEeccccccCceeEEEe-cCceEEeccCcceeEEeccc
Confidence 99876554 33345888889999997 55578888899999999864
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-48 Score=415.67 Aligned_cols=605 Identities=14% Similarity=0.214 Sum_probs=447.0
Q ss_pred cCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCCeEEE
Q 001248 367 HPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQI 446 (1114)
Q Consensus 367 spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~i 446 (1114)
+..|++ ++++....|.+||+.+|+..... ....-...|+|+.-+||.-.||+|..||.|+|
T Consensus 31 ~~~Gr~--va~~a~E~vn~WdlRtge~~~~l-----------------~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqi 91 (888)
T KOG0306|consen 31 SGKGRA--VAVSALEQVNIWDLRTGEIEKKL-----------------ILLKKKAEVTCLRSSDDILLLAVGYADGSVQI 91 (888)
T ss_pred cCCCcE--EEEeccccEeEEeeecchhhhhh-----------------hhhcccceEEEeeccCCcceEEEEecCceEEe
Confidence 345885 33445678999999999554320 12233458999999999999999999999999
Q ss_pred EEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEE
Q 001248 447 YSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI 526 (1114)
Q Consensus 447 wd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l 526 (1114)
|+..++.... ++.||...|+++.|...|. .|+|||.|+.|.+||+-...-+..+.||...|+..-|.. +.+++
T Consensus 92 f~~~s~~~~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~--~~~~l 164 (888)
T KOG0306|consen 92 FSLESEEILI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLN--GDSFL 164 (888)
T ss_pred eccCCCceee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccC--CCeEE
Confidence 9999876444 7999999999999999999 799999999999999998888999999999999877644 33799
Q ss_pred EEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCc
Q 001248 527 FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV 606 (1114)
Q Consensus 527 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 606 (1114)
++.+.|+.|++||+.+..+..+...|...+..+++.+ +.+++++.|+.+++|++...
T Consensus 165 vS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~-----------------------~~lvt~~~dse~~v~~L~~~ 221 (888)
T KOG0306|consen 165 VSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE-----------------------KLLVTAGTDSELKVWELAFE 221 (888)
T ss_pred EEeccCceEEEEecccceeeeEEecccceEEEEEEec-----------------------ceEEEEecCCceEEEEeecc
Confidence 9999999999999999888888888888888887766 25899999999999998321
Q ss_pred ------------ceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCC
Q 001248 607 ------------QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 674 (1114)
Q Consensus 607 ------------~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (1114)
+...++...+ .+....++..++++++++-+.|..+.++.+.+..+..+.+.........-.. .. .
T Consensus 222 ~D~~~~~~~~s~~~~G~~~rqs-k~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~-t~-e 298 (888)
T KOG0306|consen 222 DDEKETNRYISTKLRGTFIRQS-KGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAE-TE-E 298 (888)
T ss_pred cccccccccceeeccceeeecc-CCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhcc-cc-c
Confidence 0111222111 2234567777889999999999999999998764443333220000000000 00 0
Q ss_pred ccchhhhhhhhccccccccccccccccCCC-CCCccccCCC-cccccccCCCceeEEEeccCC-C-CccccccccCcccc
Q 001248 675 ISPISAAAAAAATSAGLADRAASMVSIPGM-NGDVRSLADV-KPRITEESNDKSKVWKLTELS-E-PNQCRSLRLPENLR 750 (1114)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~l~~~~~d~~i~iw~~~~~~-~-~~~~~~~~~~~~~~ 750 (1114)
...+...... ....+...+....-. ..+....... ..++. -.++++..|.++... . +...+.-.+...+|
T Consensus 299 -~~~~v~~sl~----~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GH 372 (888)
T KOG0306|consen 299 -NEDDVEKSLS----DEIKRLETIRTSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGH 372 (888)
T ss_pred -cccchhhhHH----HHHHHHHheechhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccc
Confidence 0000000000 000000000000000 0000001111 22333 556778888777611 1 11111222223569
Q ss_pred ccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCC
Q 001248 751 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 830 (1114)
Q Consensus 751 ~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~ 830 (1114)
...|.++++|.+...+++++ ++.+++|+.. +.++++.. ....+.+..|-|.+
T Consensus 373 R~dVRsl~vS~d~~~~~Sga-~~SikiWn~~----------------------t~kciRTi-----~~~y~l~~~Fvpgd 424 (888)
T KOG0306|consen 373 RSDVRSLCVSSDSILLASGA-GESIKIWNRD----------------------TLKCIRTI-----TCGYILASKFVPGD 424 (888)
T ss_pred hhheeEEEeecCceeeeecC-CCcEEEEEcc----------------------CcceeEEe-----ccccEEEEEecCCC
Confidence 99999999999987555544 5577777643 55554432 23467888999999
Q ss_pred CEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc-----ceEEEeec-----
Q 001248 831 SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-----DEVKSKLK----- 899 (1114)
Q Consensus 831 ~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~-----~~~~~~l~----- 899 (1114)
+++++|. .|.+.+||+.+...+.+.+.|.+.|..++.+| |+..+++|+.|.+|++||+.- |...+.+.
T Consensus 425 ~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~r 503 (888)
T KOG0306|consen 425 RYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTR 503 (888)
T ss_pred ceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccce
Confidence 9999999 79999999999999999999999999999999 999999999999999999752 11111111
Q ss_pred --ccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEE
Q 001248 900 --GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLA 976 (1114)
Q Consensus 900 --~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~ 976 (1114)
.-.+.|.|+.+||||++||.+--|.+|+||-+++ ......+.||.. +|.++..|||++++++ +.|+.|+
T Consensus 504 tLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDt-----lKFflsLYGHkL---PV~smDIS~DSklivTgSADKnVK 575 (888)
T KOG0306|consen 504 TLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDT-----LKFFLSLYGHKL---PVLSMDISPDSKLIVTGSADKNVK 575 (888)
T ss_pred EEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecc-----eeeeeeeccccc---ceeEEeccCCcCeEEeccCCCceE
Confidence 1346799999999999999999999999999998 334556678775 8999999999999999 6899999
Q ss_pred EEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEec
Q 001248 977 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAH 1056 (1114)
Q Consensus 977 iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 1056 (1114)
||-+.-|.|-+++. +|...|.++.|-|+..++++++.|+.|+-||-...+.+..+. +|+.. ++ +++-+
T Consensus 576 iWGLdFGDCHKS~f--AHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~-------~H~~e-v~--cLav~ 643 (888)
T KOG0306|consen 576 IWGLDFGDCHKSFF--AHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD-------GHHSE-VW--CLAVS 643 (888)
T ss_pred Eeccccchhhhhhh--cccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeec-------cchhe-ee--eeEEc
Confidence 99999999999998 899999999999999999999999999999999999998887 66555 77 67777
Q ss_pred CCCCCeEEEEeCCCcEEEEeccC
Q 001248 1057 PQEPNEFALGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1057 ~~d~~~l~s~~~Dg~v~vW~i~~ 1079 (1114)
| +|.++++++.|.+|++|.-.+
T Consensus 644 ~-~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 644 P-NGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred C-CCCeEEeccCCceeEeeeccC
Confidence 8 689999999999999999766
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-47 Score=408.51 Aligned_cols=514 Identities=13% Similarity=0.204 Sum_probs=406.7
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
...+|+|+.-+||.- +||.|..||.|+||+..++.... .+.||..+|+++.|+..|.+||
T Consensus 64 ~k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~-------------------tfngHK~AVt~l~fd~~G~rla 123 (888)
T KOG0306|consen 64 KKAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILI-------------------TFNGHKAAVTTLKFDKIGTRLA 123 (888)
T ss_pred ccceEEEeeccCCcc-eEEEEecCceEEeeccCCCceee-------------------eecccccceEEEEEcccCceEe
Confidence 446899999999987 69999999999999999886654 4889999999999999999999
Q ss_pred EEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEe
Q 001248 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 516 (1114)
Q Consensus 437 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~ 516 (1114)
+||.|+.|.+||+-....+. .+.||...|+.+-|..+.+ ++++.+.|+.|++||+++..|..+...|.+.+++++
T Consensus 124 SGskDt~IIvwDlV~E~Gl~---rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~ 198 (888)
T KOG0306|consen 124 SGSKDTDIIVWDLVGEEGLF---RLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALV 198 (888)
T ss_pred ecCCCccEEEEEeccceeeE---EeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccceeeeEEecccceEEEEE
Confidence 99999999999998765444 6899999999999998777 899999999999999999999999999999999999
Q ss_pred eccCCCceEEEEEecCCeEEEEEcCCCCCe------e------e-ecCCCCeeEEEEEecCCCeEEee------------
Q 001248 517 PHHKENIQFIFSTALDGKIKAWLYDNLGSR------V------D-YEAPGRWCTTMAYSADGTRTYQG------------ 571 (1114)
Q Consensus 517 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~------~------~-~~~~~~~v~~~~~s~~g~~~~~~------------ 571 (1114)
+.. +.+++++.|+.+++|++....-. . . .....+....+...++++.++..
T Consensus 199 ~~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~ 274 (888)
T KOG0306|consen 199 LDE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIR 274 (888)
T ss_pred Eec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeec
Confidence 754 58999999999999998221100 0 0 01111122223333333311000
Q ss_pred -------------------------------------------ecccceeEEEecCCCC---EEEEEeCCCeEEEEECCC
Q 001248 572 -------------------------------------------FRKRSLGVVQFDTTKN---RFLAAGDDFSIKFWDMDS 605 (1114)
Q Consensus 572 -------------------------------------------~~~~~v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~ 605 (1114)
.....+..+.+.|.++ .|+. -.++++..|.+..
T Consensus 275 s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~ 353 (888)
T KOG0306|consen 275 SKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLEN 353 (888)
T ss_pred CHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEE-eecCceEEEEecc
Confidence 0112344455555442 3333 6678888887765
Q ss_pred -cc------eEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccch
Q 001248 606 -VQ------LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPI 678 (1114)
Q Consensus 606 -~~------~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (1114)
+. .+..+...+|...|.++++|.+...+++|+. +.+++|+..+. ++++++.
T Consensus 354 s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~-kciRTi~-------------------- 411 (888)
T KOG0306|consen 354 SGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTL-KCIRTIT-------------------- 411 (888)
T ss_pred CCCCCccccccceeeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCc-ceeEEec--------------------
Confidence 21 2334555566778999999998887777665 78999998887 5555442
Q ss_pred hhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEE
Q 001248 679 SAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLI 758 (1114)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 758 (1114)
...+.+..
T Consensus 412 ------------------------------------------------------------------------~~y~l~~~ 419 (888)
T KOG0306|consen 412 ------------------------------------------------------------------------CGYILASK 419 (888)
T ss_pred ------------------------------------------------------------------------cccEEEEE
Confidence 23567788
Q ss_pred EccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-
Q 001248 759 FTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS- 837 (1114)
Q Consensus 759 ~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~- 837 (1114)
|-|.+++++.|..+|.+.+||+.. ..++.. .. .|.+.|.+++.+||++.+++|+
T Consensus 420 Fvpgd~~Iv~G~k~Gel~vfdlaS----------------------~~l~Et-i~--AHdgaIWsi~~~pD~~g~vT~sa 474 (888)
T KOG0306|consen 420 FVPGDRYIVLGTKNGELQVFDLAS----------------------ASLVET-IR--AHDGAIWSISLSPDNKGFVTGSA 474 (888)
T ss_pred ecCCCceEEEeccCCceEEEEeeh----------------------hhhhhh-hh--ccccceeeeeecCCCCceEEecC
Confidence 999999999999999999998753 222111 11 3999999999999999999999
Q ss_pred CCeEEEEEcCC-----CccccccC-------CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCe
Q 001248 838 GGKISLFNMMT-----FKTMATFM-------PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI 905 (1114)
Q Consensus 838 dg~i~iwd~~~-----~~~~~~~~-------~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V 905 (1114)
|.+|++||..- +...+.+. ..+..|.|+.+|| |+++||++--|.+|+||-+.+.+..-.+.||.-+|
T Consensus 475 DktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV 553 (888)
T KOG0306|consen 475 DKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPV 553 (888)
T ss_pred CcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeecccccce
Confidence 99999999741 22211111 1356799999999 99999999999999999999999999999999999
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCCCc
Q 001248 906 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLE 984 (1114)
Q Consensus 906 ~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~~~ 984 (1114)
.|+..|||++.++|||.|.+|+||-++-|.+ -+.+-+|. ++|+++.|-|+..++.+ |.|+.++-||-.+.+
T Consensus 554 ~smDIS~DSklivTgSADKnVKiWGLdFGDC-----HKS~fAHd---DSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe 625 (888)
T KOG0306|consen 554 LSMDISPDSKLIVTGSADKNVKIWGLDFGDC-----HKSFFAHD---DSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFE 625 (888)
T ss_pred eEEeccCCcCeEEeccCCCceEEeccccchh-----hhhhhccc---CceeEEEEcccceeEEEecCcceEEeechhhhh
Confidence 9999999999999999999999999998664 33444554 48999999999888877 799999999999999
Q ss_pred eeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeee
Q 001248 985 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR 1030 (1114)
Q Consensus 985 ~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~ 1030 (1114)
++..+. +|...|+|++.+|+|.+++++|.|.+|++|......++
T Consensus 626 ~iq~L~--~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~~ 669 (888)
T KOG0306|consen 626 EIQKLD--GHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEILI 669 (888)
T ss_pred hheeec--cchheeeeeEEcCCCCeEEeccCCceeEeeeccCccee
Confidence 998876 89999999999999999999999999999997664443
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-49 Score=392.42 Aligned_cols=367 Identities=20% Similarity=0.280 Sum_probs=291.0
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw 494 (1114)
.+.||.++|.|++|||+|+.||+|+.|.++++||+.+..... +..+|...|.|++|+|||+ .|++|+.||+|++|
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLW 184 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcc--hhhccccCCeEEEe
Confidence 478999999999999999999999999999999999987555 8999999999999999999 79999999999999
Q ss_pred eCCCCcce-eEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeec
Q 001248 495 DATNGAKQ-YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR 573 (1114)
Q Consensus 495 d~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~ 573 (1114)
|.++|+++ ..+.+|...|++++|.|-. ++
T Consensus 185 dpktg~~~g~~l~gH~K~It~Lawep~h----l~---------------------------------------------- 214 (480)
T KOG0271|consen 185 DPKTGQQIGRALRGHKKWITALAWEPLH----LV---------------------------------------------- 214 (480)
T ss_pred cCCCCCcccccccCcccceeEEeecccc----cC----------------------------------------------
Confidence 99999876 5899999999999986532 11
Q ss_pred ccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccc
Q 001248 574 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL 653 (1114)
Q Consensus 574 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~ 653 (1114)
|..++|++++.||.|+|||+..+.++..+.+| +..|+|+.|..+| ++++|+.|++|++|+...| .+
T Consensus 215 ----------p~~r~las~skDg~vrIWd~~~~~~~~~lsgH--T~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG-~~ 280 (480)
T KOG0271|consen 215 ----------PPCRRLASSSKDGSVRIWDTKLGTCVRTLSGH--TASVTCVRWGGEG-LIYSGSQDRTIKVWRALDG-KL 280 (480)
T ss_pred ----------CCccceecccCCCCEEEEEccCceEEEEeccC--ccceEEEEEcCCc-eEEecCCCceEEEEEccch-hH
Confidence 11225889999999999999999999999877 5689999998765 8999999999999999888 67
Q ss_pred eeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEecc
Q 001248 654 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 733 (1114)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~ 733 (1114)
.+.+.+|..
T Consensus 281 ~r~lkGHah----------------------------------------------------------------------- 289 (480)
T KOG0271|consen 281 CRELKGHAH----------------------------------------------------------------------- 289 (480)
T ss_pred HHhhcccch-----------------------------------------------------------------------
Confidence 777766554
Q ss_pred CCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCC
Q 001248 734 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 813 (1114)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~ 813 (1114)
.|..++.+.+-- |-++.-| +.+...... + +.....+.
T Consensus 290 -------------------wvN~lalsTdy~-LRtgaf~--------------~t~~~~~~~--------s-e~~~~Al~ 326 (480)
T KOG0271|consen 290 -------------------WVNHLALSTDYV-LRTGAFD--------------HTGRKPKSF--------S-EEQKKALE 326 (480)
T ss_pred -------------------heeeeeccchhh-hhccccc--------------cccccCCCh--------H-HHHHHHHH
Confidence 344444333211 1111111 111000000 0 00000000
Q ss_pred CCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcC-CCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc
Q 001248 814 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMM-TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 891 (1114)
Q Consensus 814 ~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~-~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~ 891 (1114)
-+..+.-..+..+++|+ |.++.+|+-. +.+++..+.+|...|..+.||| |++++|+++.|..|++||..+
T Consensus 327 -------rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~g~t 398 (480)
T KOG0271|consen 327 -------RYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP-DGRYIASASFDKSVKLWDGRT 398 (480)
T ss_pred -------HHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECC-CccEEEEeecccceeeeeCCC
Confidence 00111223557899999 7899999976 4457888999999999999999 999999999999999999999
Q ss_pred ceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEe
Q 001248 892 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH 971 (1114)
Q Consensus 892 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~ 971 (1114)
|+.+..|+||-+.|+.++||.|.++|+|||.|.++++|++.+.+. ..
T Consensus 399 Gk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl-----~~---------------------------- 445 (480)
T KOG0271|consen 399 GKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKL-----KQ---------------------------- 445 (480)
T ss_pred cchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeee-----cc----------------------------
Confidence 999999999999999999999999999999999999999988332 11
Q ss_pred CCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEE
Q 001248 972 ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1023 (1114)
Q Consensus 972 d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd 1023 (1114)
.+.+|...|.++.|+|||+.+++|+.|+.+++|.
T Consensus 446 ------------------DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 446 ------------------DLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ------------------cCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 1237888888888999998888888888888884
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-45 Score=393.45 Aligned_cols=546 Identities=15% Similarity=0.235 Sum_probs=422.3
Q ss_pred eEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCC
Q 001248 362 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR 441 (1114)
Q Consensus 362 ~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d 441 (1114)
-.+.|++||.. +.+ ...+.|.++|+..++... +.-.+...|.+++.||+|.+|++....
T Consensus 18 Gnl~ft~dG~s-viS-PvGNrvsv~dLknN~S~T-------------------l~~e~~~NI~~ialSp~g~lllavdE~ 76 (893)
T KOG0291|consen 18 GNLVFTKDGNS-VIS-PVGNRVSVFDLKNNKSYT-------------------LPLETRYNITRIALSPDGTLLLAVDER 76 (893)
T ss_pred CcEEECCCCCE-EEe-ccCCEEEEEEccCCccee-------------------EEeecCCceEEEEeCCCceEEEEEcCC
Confidence 45789999996 433 457899999998765533 123466789999999999999999999
Q ss_pred CeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCc--------ceeEeeccccCEE
Q 001248 442 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA--------KQYIFEGHEAPVY 513 (1114)
Q Consensus 442 g~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~--------~~~~~~~h~~~v~ 513 (1114)
|...+-++.....++ .+ ....+|.|+.|||||+ ++|.|. .+.+.||...... ..+++.+|-..|.
T Consensus 77 g~~~lvs~~~r~Vlh---~f-~fk~~v~~i~fSPng~--~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~ 149 (893)
T KOG0291|consen 77 GRALLVSLLSRSVLH---RF-NFKRGVGAIKFSPNGK--FFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDIT 149 (893)
T ss_pred CcEEEEecccceeeE---EE-eecCccceEEECCCCc--EEEEEe-cceeEEEecCcchhcccCcceEeeeecCCcccee
Confidence 999888887755443 22 2356899999999999 455443 5689999865322 2356789999999
Q ss_pred EEeeccCCCceEEEEEecCCeEEEEEcCCCCCe--eeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEE
Q 001248 514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR--VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 591 (1114)
Q Consensus 514 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~--~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~ 591 (1114)
++.|+. |.++|++|+.|.++++|.++..+.. ..+.+|...|....|..+ ...+++
T Consensus 150 si~Ws~--DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~---------------------~~~l~t 206 (893)
T KOG0291|consen 150 SIDWSD--DSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGAN---------------------SLDLYT 206 (893)
T ss_pred EEEecc--CCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccC---------------------cceEEE
Confidence 999865 4479999999999999999876653 344555555555544444 446999
Q ss_pred EeCCCeEEEEECCCc-----------------------ce-----EE----EeccCCCCCCcCeEEEcCCCCEEEEEeCC
Q 001248 592 AGDDFSIKFWDMDSV-----------------------QL-----LT----SIDADGGLPASPRIRFNKDGCLLAVSTND 639 (1114)
Q Consensus 592 ~~~dg~i~iwd~~~~-----------------------~~-----~~----~~~~~~~~~~v~~~~~s~d~~~l~~~~~d 639 (1114)
.+.||.+.+|..... +. .. ..-.......+++.+|++.-+.|++|-..
T Consensus 207 vskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFss 286 (893)
T KOG0291|consen 207 VSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSS 286 (893)
T ss_pred EecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecC
Confidence 999999999987611 10 00 00011112467888888888888888888
Q ss_pred CcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCccccc
Q 001248 640 NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRIT 719 (1114)
Q Consensus 640 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 719 (1114)
|.+.+|++.+- .++..+.
T Consensus 287 G~f~LyelP~f-~lih~LS------------------------------------------------------------- 304 (893)
T KOG0291|consen 287 GEFGLYELPDF-NLIHSLS------------------------------------------------------------- 304 (893)
T ss_pred CeeEEEecCCc-eEEEEee-------------------------------------------------------------
Confidence 88888876544 2222220
Q ss_pred ccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccC-ceEEEEeecccccCCCCCcccccccc
Q 001248 720 EESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN-AIHLLWKWQRTERNSSGKATASVAPQ 798 (1114)
Q Consensus 720 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~ 798 (1114)
....+|..++|+..|..++.++.. |.+.||+++.+.+-
T Consensus 305 -----------------------------is~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYV------------ 343 (893)
T KOG0291|consen 305 -----------------------------ISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYV------------ 343 (893)
T ss_pred -----------------------------cccceeeEEEecccCCEEEEcCCccceEEEEEeecccee------------
Confidence 134678999999999999999887 99999998754321
Q ss_pred ccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEE
Q 001248 799 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAI 877 (1114)
Q Consensus 799 ~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~ 877 (1114)
++..+|...+++++++|||+++|+|+ ||+|+|||..++-|..++..|...|+.+.|+. .++.+++
T Consensus 344 -------------lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~-~g~~lls 409 (893)
T KOG0291|consen 344 -------------LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTA-RGNVLLS 409 (893)
T ss_pred -------------eeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEe-cCCEEEE
Confidence 22335999999999999999999999 89999999999999999999999999999999 9999999
Q ss_pred EeCCCcEEEEEcccceEEEeecccc-cCeeEEEEcCCCCEEEEEeCCC-cEEEEeCCCCccccccccccCCCCCCCCCCc
Q 001248 878 GMDDSSIQIYNVRVDEVKSKLKGHS-KRITGLAFSHALNVLVSSGADS-QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD 955 (1114)
Q Consensus 878 g~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~s~d~~~l~s~s~D~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 955 (1114)
.+-||+|+.||+...+..+++.... -...+|+..|.|..+..|+.|. .|.+|++++|+ .+.++.||. ++|
T Consensus 410 sSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq-----llDiLsGHE---gPV 481 (893)
T KOG0291|consen 410 SSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ-----LLDILSGHE---GPV 481 (893)
T ss_pred eecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe-----eeehhcCCC---Ccc
Confidence 9999999999999999998887543 3456788888899999999886 59999999965 477888887 599
Q ss_pred eEEEEccCCcEEEE-EeCCeEEEEEcCCCc-eeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEe
Q 001248 956 TRVQFHQDQIHFLV-VHETQLAIFETTKLE-CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1033 (1114)
Q Consensus 956 ~~v~fspdg~~l~~-~~d~~i~iwd~~~~~-~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~ 1033 (1114)
.+++|+|+|..|++ +-|++|++||+-... .+.++ .+...++.++|+|||+-|+++..||.|.+||...+.....+
T Consensus 482 s~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl---~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~I 558 (893)
T KOG0291|consen 482 SGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL---EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSI 558 (893)
T ss_pred eeeEEccccCeEEeccccceEEEEEeeccCceeeeE---eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccc
Confidence 99999999999999 689999999986553 23333 34778999999999999999999999999999988777555
Q ss_pred CCCcccCCCC----------CCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCC--CcccCC
Q 001248 1034 NPSAYLPAGV----------SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE--GKWGVP 1087 (1114)
Q Consensus 1034 ~~~~~~~~~~----------~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~--~~~~~~ 1087 (1114)
.....+..|. ....-.-.+++|++ ||..|++|+..+.|+++++.++. .+|+..
T Consensus 559 dgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySa-DG~~IlAgG~sn~iCiY~v~~~vllkkfqiS 623 (893)
T KOG0291|consen 559 DGRKDLSGGRKETDRITAENSAKGKTFTTICYSA-DGKCILAGGESNSICIYDVPEGVLLKKFQIS 623 (893)
T ss_pred cchhhccccccccceeehhhcccCCceEEEEEcC-CCCEEEecCCcccEEEEECchhheeeeEEec
Confidence 4322222221 11123345899999 79999999999999999999987 445443
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-45 Score=387.16 Aligned_cols=627 Identities=15% Similarity=0.184 Sum_probs=417.2
Q ss_pred ceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEe-
Q 001248 361 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY- 439 (1114)
Q Consensus 361 v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~- 439 (1114)
-..++.+|-.. ++|. -....|.+||+...+.-+ ++..|..+++|+|||++|+|+|+|-
T Consensus 40 ~~gLa~~p~Sg-l~aY-pAGCvVVlfn~~~~tQ~h-------------------lvnssRk~~t~vAfS~~GryvatGEc 98 (1080)
T KOG1408|consen 40 ANGLASVPCSG-LCAY-PAGCVVVLFNVDSCTQSH-------------------LVNSSRKPLTCVAFSQNGRYVATGEC 98 (1080)
T ss_pred CCccccccccc-ceee-ccCcEEEEEcccccchhh-------------------eecccCcceeEEEEcCCCcEEEeccc
Confidence 35566666655 3443 234678899987654433 5778888999999999999999984
Q ss_pred -CCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecC--CCCEEEEeCCCCcceeEeeccccCEEEEe
Q 001248 440 -SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD--DKTIKVWDATNGAKQYIFEGHEAPVYSVC 516 (1114)
Q Consensus 440 -~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~h~~~v~~~~ 516 (1114)
....++||++.....+. +|..|.-.|+|++|+|.++ |+++.+. |-.|.+||++.......-+ -...|..++
T Consensus 99 G~~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asnk-iss~Vsav~ 172 (1080)
T KOG1408|consen 99 GRTPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASNK-ISSVVSAVA 172 (1080)
T ss_pred CCCccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhcccccccc-cceeEEEEE
Confidence 56679999999877555 7889999999999999999 6776664 4568889887554333222 346788888
Q ss_pred eccCCCceEEEEEecCCeEEEEEcCCCCCeee---ecCCC-----------------C---eeEEEEEecCCCeE-----
Q 001248 517 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVD---YEAPG-----------------R---WCTTMAYSADGTRT----- 568 (1114)
Q Consensus 517 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~---~~~~~-----------------~---~v~~~~~s~~g~~~----- 568 (1114)
| +.+|.|+++.+ ...|++|.++....... +.+.. . .-...+++..|...
T Consensus 173 f--sEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsR 249 (1080)
T KOG1408|consen 173 F--SEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSR 249 (1080)
T ss_pred E--ccCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechh
Confidence 6 56778998876 67899999876552210 00000 0 01223333333210
Q ss_pred --E---eeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEecc----------------------CCCCCCc
Q 001248 569 --Y---QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA----------------------DGGLPAS 621 (1114)
Q Consensus 569 --~---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------------------~~~~~~v 621 (1114)
+ ...+...-.|++++ .+++++|+.+|.|++|+..+.....++.. .......
T Consensus 250 RLLDKWVqcRTTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~ 327 (1080)
T KOG1408|consen 250 RLLDKWVQCRTTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDA 327 (1080)
T ss_pred hhhhhhhhhhccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCce
Confidence 0 00111223344444 45899999999999999877554444321 1112334
Q ss_pred CeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhcccccccccccccccc
Q 001248 622 PRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSI 701 (1114)
Q Consensus 622 ~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (1114)
..+.|++....|.+..+|..+++||+++-.+.-+... ...
T Consensus 328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s---~ly------------------------------------- 367 (1080)
T KOG1408|consen 328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSS---MLY------------------------------------- 367 (1080)
T ss_pred eEEEecCCCceEEEEEcCceEEEEeccccccccceee---eee-------------------------------------
Confidence 5788999999999999999999999987643322110 000
Q ss_pred CCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeec
Q 001248 702 PGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQ 781 (1114)
Q Consensus 702 ~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~ 781 (1114)
....||+++...... |.... +.-|.+. +++++.|++||+|++.
T Consensus 368 ----------------------HS~ciW~Ve~~p~nv-----------~~~~~---aclp~~c-F~TCSsD~TIRlW~l~ 410 (1080)
T KOG1408|consen 368 ----------------------HSACIWDVENLPCNV-----------HSPTA---ACLPRGC-FTTCSSDGTIRLWDLA 410 (1080)
T ss_pred ----------------------ccceeeeeccccccc-----------cCccc---ccCCccc-eeEecCCCcEEEeecc
Confidence 122344444321100 00000 0011111 4444444445555444
Q ss_pred ccccCCC--CCccccc--cc--------cccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCC
Q 001248 782 RTERNSS--GKATASV--AP--------QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT 848 (1114)
Q Consensus 782 ~~~~~~~--~~~~~~~--~~--------~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~ 848 (1114)
....+.. .+.+... ++ .+.|...+-.-.......+....+.++++||+|++||+|. .|+|+||++..
T Consensus 411 ~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~ 490 (1080)
T KOG1408|consen 411 FCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQE 490 (1080)
T ss_pred cccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehh
Confidence 3111000 0000000 00 0001111110000011112566799999999999999999 89999999999
Q ss_pred CccccccCCCCCCeEEEEEecC--CCcEEEEEeCCCcEEEEEccc-ceEEEeecccccCeeEEEEcCCC--CEEEEEeCC
Q 001248 849 FKTMATFMPPPPAATFLAFHPQ--DNNIIAIGMDDSSIQIYNVRV-DEVKSKLKGHSKRITGLAFSHAL--NVLVSSGAD 923 (1114)
Q Consensus 849 ~~~~~~~~~~~~~i~~l~~sp~--d~~~la~g~~dg~v~iwd~~~-~~~~~~l~~h~~~V~~l~~s~d~--~~l~s~s~D 923 (1114)
.+.+..+..|+.+|.|+.||-. ..++||+++.|..|+|||+.. ..++.++.+|+..|++|.|.-.| ..+++++.|
T Consensus 491 l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGAD 570 (1080)
T KOG1408|consen 491 LEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGAD 570 (1080)
T ss_pred hhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCc
Confidence 9999999999999999999852 357999999999999999975 46778999999999999998776 789999999
Q ss_pred CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCCCceeeeeec-CCCCcCeeEE
Q 001248 924 SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVP-RESSAPITHA 1001 (1114)
Q Consensus 924 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~-~~h~~~v~~l 1001 (1114)
+.|.+- ...... ...+-....+......+..++..|..+++++ +.|+.|+||++..++..+.|.. ++|.+....+
T Consensus 571 ksimFr-~~qk~~--~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv 647 (1080)
T KOG1408|consen 571 KSIMFR-VNQKAS--SGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKV 647 (1080)
T ss_pred hhhhee-hhcccc--CceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEE
Confidence 977643 322111 0111111112222356789999999999999 7999999999999999999974 3566788899
Q ss_pred EECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1002 TFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1002 ~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
...|.|-|||+.+.|+++.++|+.+|+++.+.. ||... |. .+.|.+ |.+.|++++.||+|+||.++...
T Consensus 648 ~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~-------GHsE~-VT--G~kF~n-DCkHlISvsgDgCIFvW~lp~~m 716 (1080)
T KOG1408|consen 648 ILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT-------GHSEA-VT--GVKFLN-DCKHLISVSGDGCIFVWKLPLTM 716 (1080)
T ss_pred EECCCccEEEEeecCCceEEEEeccchhhhhhc-------Ccchh-ee--eeeecc-cchhheeecCCceEEEEECchhH
Confidence 999999999999999999999999999998876 44233 44 899999 68999999999999999998744
Q ss_pred -----CcccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001248 1082 -----GKWGVPPPVDNGSTSSMPATPPVGGSGSD 1110 (1114)
Q Consensus 1082 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1110 (1114)
.+....+-...+.....|.+|.+++.+++
T Consensus 717 ii~m~~r~~~lr~rq~~~~~~~pl~p~~p~d~~~ 750 (1080)
T KOG1408|consen 717 IIRMVNRNGRLRVRQLEKFIAVPLEPDNPNDASC 750 (1080)
T ss_pred hHHHHHHhhHHHHHhccCCcCCCCCCCCCCCCcc
Confidence 22222344455555666666666666554
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-41 Score=355.91 Aligned_cols=546 Identities=13% Similarity=0.151 Sum_probs=375.5
Q ss_pred CCCCceEEEEcCCCCeEEEEEe--cCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCe
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 434 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~--~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 434 (1114)
|...++|++||++|+| +|+|- ....++||++.....+. -+..|.-.|+|++|||.++|
T Consensus 77 sRk~~t~vAfS~~Gry-vatGEcG~~pa~kVw~la~h~vVA-------------------EfvdHKY~vtcvaFsp~~ky 136 (1080)
T KOG1408|consen 77 SRKPLTCVAFSQNGRY-VATGECGRTPASKVWSLAFHGVVA-------------------EFVDHKYNVTCVAFSPGNKY 136 (1080)
T ss_pred cCcceeEEEEcCCCcE-EEecccCCCccceeeeeccccchh-------------------hhhhccccceeeeecCCCcE
Confidence 8889999999999997 99986 45579999998876554 27789999999999999999
Q ss_pred EEEEeC--CCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeE--------
Q 001248 435 FGVAYS--RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI-------- 504 (1114)
Q Consensus 435 las~~~--dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~-------- 504 (1114)
+++.+. |..|.+||++...... -+.-...|..++|+.||. |++|.+ ...|++|.++.++....
T Consensus 137 vvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs 209 (1080)
T KOG1408|consen 137 VVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRS 209 (1080)
T ss_pred EEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeee-eeeEEEEEeeccccccCCccccchh
Confidence 998765 5678899887543332 223355799999999999 788877 57899999876551110
Q ss_pred -----e------------------------ecc-----------------ccCEEEEeeccCCCceEEEEEecCCeEEEE
Q 001248 505 -----F------------------------EGH-----------------EAPVYSVCPHHKENIQFIFSTALDGKIKAW 538 (1114)
Q Consensus 505 -----~------------------------~~h-----------------~~~v~~~~~~~~~~~~~l~s~~~d~~i~~w 538 (1114)
+ .|| ...-.|++++ ..++++|+.+|.|+++
T Consensus 210 ~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs----~r~I~cgCa~g~vrlF 285 (1080)
T KOG1408|consen 210 YFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVS----SRLIACGCAKGMVRLF 285 (1080)
T ss_pred hhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeee----cceEEEeeccceeeec
Confidence 0 011 0112233432 2689999999999999
Q ss_pred EcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeeccc---ceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEe-cc
Q 001248 539 LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR---SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI-DA 614 (1114)
Q Consensus 539 d~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~ 614 (1114)
+..+.....++.....--..++--.+-...+.+.... ..-.+.|++....|.+...|..++|||++.-..+... ..
T Consensus 286 np~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~ 365 (1080)
T KOG1408|consen 286 NPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSM 365 (1080)
T ss_pred CcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeee
Confidence 8877655444432211000000000011111111111 2234678888899999999999999999874433211 11
Q ss_pred CCCCCCcCeEEEcC-----------CCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhh
Q 001248 615 DGGLPASPRIRFNK-----------DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAA 683 (1114)
Q Consensus 615 ~~~~~~v~~~~~s~-----------d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (1114)
-.|...|+.+.--| -...+++++.|++|++|++..+.. -..+......
T Consensus 366 lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctn-n~vyrRNils-------------------- 424 (1080)
T KOG1408|consen 366 LYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTN-NQVYRRNILS-------------------- 424 (1080)
T ss_pred eeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccc-cceeecccch--------------------
Confidence 11222344443333 023588999999999999876411 0111000000
Q ss_pred hhccccccccccccccccCCCCCCccccCCCcccccccCCCce--------eEEEeccCCCCccccccccCccccccceE
Q 001248 684 AAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKS--------KVWKLTELSEPNQCRSLRLPENLRATKIS 755 (1114)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i--------~iw~~~~~~~~~~~~~~~~~~~~~~~~i~ 755 (1114)
.+.+-.-..|++. -++|-.. .........+.
T Consensus 425 ------------------------------~~l~ki~y~d~~~q~~~d~~~~~fdka~-----------~s~~d~r~G~R 463 (1080)
T KOG1408|consen 425 ------------------------------ANLSKIPYEDSTQQIMHDASAGIFDKAL-----------VSTCDSRFGFR 463 (1080)
T ss_pred ------------------------------hhhhcCccccCchhhhhhccCCcccccc-----------hhhcCcccceE
Confidence 0000000001111 1111110 00012456789
Q ss_pred EEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEee---CCCE
Q 001248 756 RLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK---NDSY 832 (1114)
Q Consensus 756 ~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~---d~~~ 832 (1114)
+++++|+|+.|+++..-|.++||+++.-.. + .....|+..|.|+.||. ..++
T Consensus 464 ~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~----------------------~---~~~eAHesEilcLeyS~p~~~~kL 518 (1080)
T KOG1408|consen 464 ALAVSPDGQHLASGDRGGNLRVYDLQELEY----------------------T---CFMEAHESEILCLEYSFPVLTNKL 518 (1080)
T ss_pred EEEECCCcceecccCccCceEEEEehhhhh----------------------h---hheecccceeEEEeecCchhhhHh
Confidence 999999999999999999999999864221 0 11123999999999985 3478
Q ss_pred EEEEe-CCeEEEEEcC-CCccccccCCCCCCeEEEEEecCCC-cEEEEEeCCCcEEEEEcccceEEEeeccc-----ccC
Q 001248 833 VMSAS-GGKISLFNMM-TFKTMATFMPPPPAATFLAFHPQDN-NIIAIGMDDSSIQIYNVRVDEVKSKLKGH-----SKR 904 (1114)
Q Consensus 833 l~~~~-dg~i~iwd~~-~~~~~~~~~~~~~~i~~l~~sp~d~-~~la~g~~dg~v~iwd~~~~~~~~~l~~h-----~~~ 904 (1114)
||+++ |.-|+|||+. +..++.++.+|...|+++.|.-.++ ..+++++.|..|.+--..+..-...+..| ...
T Consensus 519 LASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktT 598 (1080)
T KOG1408|consen 519 LASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTT 598 (1080)
T ss_pred hhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccce
Confidence 99999 8999999997 4567789999999999999987332 56777888887765443321111222211 346
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCCC
Q 001248 905 ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKL 983 (1114)
Q Consensus 905 V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~~ 983 (1114)
++.++..|..+++++++.|+.|+||++++++. .+.+++.....+....+...|.|.|||+ +.|+++.++|.-++
T Consensus 599 lYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq-----~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg 673 (1080)
T KOG1408|consen 599 LYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ-----VKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG 673 (1080)
T ss_pred EEEeeeCCCcceEEEEecccceEEEeccccce-----eeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc
Confidence 88999999999999999999999999999765 3445555555567889999999999999 69999999999999
Q ss_pred ceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCC
Q 001248 984 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1027 (1114)
Q Consensus 984 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~ 1027 (1114)
+|+.+.. ||+..|+.+.|++|.+.|++++.||+|.||.+...
T Consensus 674 EcvA~m~--GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 674 ECVAQMT--GHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred hhhhhhc--CcchheeeeeecccchhheeecCCceEEEEECchh
Confidence 9999887 99999999999999999999999999999998753
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=339.01 Aligned_cols=357 Identities=18% Similarity=0.327 Sum_probs=281.9
Q ss_pred CCCcceeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeE
Q 001248 346 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR 425 (1114)
Q Consensus 346 ~~~~~~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~ 425 (1114)
++|....+.+.|+.+|.+.+|+|-..-+|++|+.|-+.++|++........ ..-++..|....-. -..-...|++
T Consensus 166 ~I~~~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~---~q~~lrh~~~~~~~--s~~~nkdVT~ 240 (524)
T KOG0273|consen 166 EIPSSKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGS---TQLVLRHCIREGGK--SVPSNKDVTS 240 (524)
T ss_pred cccccceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccc---hhhhhhhhhhhhcc--cCCccCCcce
Confidence 457777788889999999999998776799999999999999875111110 00000000000000 0112357999
Q ss_pred EEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEe
Q 001248 426 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 505 (1114)
Q Consensus 426 l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 505 (1114)
++|+.+|..||+|+.||.++||+..... +. ++..|.++|.++.|+.+|. +|++++.|+++.+||..+|...+.+
T Consensus 241 L~Wn~~G~~LatG~~~G~~riw~~~G~l-~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~~q~f 314 (524)
T KOG0273|consen 241 LDWNNDGTLLATGSEDGEARIWNKDGNL-IS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTVKQQF 314 (524)
T ss_pred EEecCCCCeEEEeecCcEEEEEecCchh-hh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceEEEee
Confidence 9999999999999999999999987653 33 6889999999999999999 8999999999999999999988888
Q ss_pred eccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCC
Q 001248 506 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 585 (1114)
Q Consensus 506 ~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~ 585 (1114)
.-|..+-..+.|-.. .
T Consensus 315 ~~~s~~~lDVdW~~~---~------------------------------------------------------------- 330 (524)
T KOG0273|consen 315 EFHSAPALDVDWQSN---D------------------------------------------------------------- 330 (524)
T ss_pred eeccCCccceEEecC---c-------------------------------------------------------------
Confidence 877766444444211 1
Q ss_pred CCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccc
Q 001248 586 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS 665 (1114)
Q Consensus 586 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 665 (1114)
.+++.+.|+.|+++.+....++.++.+| ...|.++.|+|.|.+|++++.|++++||..... .....+
T Consensus 331 --~F~ts~td~~i~V~kv~~~~P~~t~~GH--~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~-~~~~~l-------- 397 (524)
T KOG0273|consen 331 --EFATSSTDGCIHVCKVGEDRPVKTFIGH--HGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS-NSVHDL-------- 397 (524)
T ss_pred --eEeecCCCceEEEEEecCCCcceeeecc--cCceEEEEECCCCceEEEecCCCeeEeeecCCC-cchhhh--------
Confidence 2666677777777777777888888875 458999999999999999999999999987655 222222
Q ss_pred cCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCcccccccc
Q 001248 666 RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL 745 (1114)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~ 745 (1114)
T Consensus 398 -------------------------------------------------------------------------------- 397 (524)
T KOG0273|consen 398 -------------------------------------------------------------------------------- 397 (524)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEE
Q 001248 746 PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA 825 (1114)
Q Consensus 746 ~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~ 825 (1114)
+.|...|..+.++|.|... | +
T Consensus 398 --~~Hskei~t~~wsp~g~v~---------------------------------~----------------n-------- 418 (524)
T KOG0273|consen 398 --QAHSKEIYTIKWSPTGPVT---------------------------------S----------------N-------- 418 (524)
T ss_pred --hhhccceeeEeecCCCCcc---------------------------------C----------------C--------
Confidence 2367788888888887500 0 0
Q ss_pred EeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccC
Q 001248 826 LSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR 904 (1114)
Q Consensus 826 ~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~ 904 (1114)
...+..+++++ |++|++||+..+.++.+|..|..+|.+++|+| +|+++|+|+.||.|.+|+..++++++...+- +.
T Consensus 419 -~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~-~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~-~~ 495 (524)
T KOG0273|consen 419 -PNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP-NGRYLASGSLDGCVHIWSTKTGKLVKSYQGT-GG 495 (524)
T ss_pred -CcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC-CCcEEEecCCCCeeEeccccchheeEeecCC-Ce
Confidence 01344566666 99999999999999999999999999999999 9999999999999999999999999988864 55
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001248 905 ITGLAFSHALNVLVSSGADSQLCVWSSD 932 (1114)
Q Consensus 905 V~~l~~s~d~~~l~s~s~D~~v~iwd~~ 932 (1114)
|..|+|+.+|.+|..+-.|+.+++.|+.
T Consensus 496 Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 496 IFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 9999999999999999999999998874
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-37 Score=331.79 Aligned_cols=586 Identities=15% Similarity=0.159 Sum_probs=428.2
Q ss_pred EEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCCe
Q 001248 364 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI 443 (1114)
Q Consensus 364 v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~ 443 (1114)
..|..-|..++++.+.+....+||.+.-..+. +-..+...|+|++-..+--|.|+| ..
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~-------------------vs~~lp~~I~alas~~~~vy~A~g---~~ 96 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLF-------------------VSKPLPDKITALASDKDYVYVASG---NK 96 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEeccceEEEE-------------------ecCCCCCceEEEEecCceEEEecC---cE
Confidence 55666677788999999999999998766654 234677899999865554444433 34
Q ss_pred EEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCC-cce----eEeeccccCEEEEeec
Q 001248 444 VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQ----YIFEGHEAPVYSVCPH 518 (1114)
Q Consensus 444 i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~----~~~~~h~~~v~~~~~~ 518 (1114)
|.+|. .|+.+.. .+.+|...|.-+.- -|. .++++..++.+.||+...+ ... ..++.....|+++. |
T Consensus 97 i~~~~--rgk~i~~--~~~~~~a~v~~l~~--fGe--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H 167 (910)
T KOG1539|consen 97 IYAYA--RGKHIRH--TTLLHGAKVHLLLP--FGE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H 167 (910)
T ss_pred EEEEE--ccceEEE--EeccccceEEEEee--ecc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c
Confidence 66664 3433333 46677777776653 466 6889999999999998874 221 22233333488875 5
Q ss_pred cCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeE
Q 001248 519 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSI 598 (1114)
Q Consensus 519 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 598 (1114)
|+---+.++.|+.+|.+.+|++++++.+.++......|+++.-+|--. .++.|..+|+|
T Consensus 168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLD---------------------VVaiG~~~G~V 226 (910)
T KOG1539|consen 168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALD---------------------VVAIGLENGTV 226 (910)
T ss_pred chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcce---------------------EEEEeccCceE
Confidence 655556799999999999999999999999888888888776665432 58889999999
Q ss_pred EEEECCCcceEEEeccCCCCCCcCeEEEcCCCCE-EEEEeCCCcEEEEEccCCccceeecc-ccccccccCCCCCCCCcc
Q 001248 599 KFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCL-LAVSTNDNGIKILATSDGIRLLRTFE-NLAYDASRTSENSKPTIS 676 (1114)
Q Consensus 599 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 676 (1114)
.++|++.++.+.+++... +.|++++|.-||.. +++|+..|.+.+||++.. +....+. .|...+.
T Consensus 227 iifNlK~dkil~sFk~d~--g~VtslSFrtDG~p~las~~~~G~m~~wDLe~k-kl~~v~~nah~~sv~----------- 292 (910)
T KOG1539|consen 227 IIFNLKFDKILMSFKQDW--GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKK-KLINVTRNAHYGSVT----------- 292 (910)
T ss_pred EEEEcccCcEEEEEEccc--cceeEEEeccCCCeeEEeccCCceEEEEEcCCC-eeeeeeeccccCCcc-----------
Confidence 999999999999998763 47999999999975 556666799999999877 3433333 3322211
Q ss_pred chhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEE
Q 001248 677 PISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISR 756 (1114)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~ 756 (1114)
...+.+....+++++.|+.+++|-.+.+... .+.+... .+|..+-.+
T Consensus 293 ------------------------------~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~--pR~LR~R-~GHs~Pp~~ 339 (910)
T KOG1539|consen 293 ------------------------------GATFLPGEPVLVTAGADNSLKVWVFDSGDGV--PRLLRSR-GGHSAPPSC 339 (910)
T ss_pred ------------------------------cceecCCCceEeeccCCCceeEEEeeCCCCc--chheeec-cCCCCCchh
Confidence 2234456677889999999999977754432 2222222 479999999
Q ss_pred EEEc-cCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCC----C
Q 001248 757 LIFT-NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND----S 831 (1114)
Q Consensus 757 l~~s-~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~----~ 831 (1114)
+.|- .+|..+++++.|++.+.+++....++..-.. ......+..+.........-.+|..+++...- .
T Consensus 340 irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~-------~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~ 412 (910)
T KOG1539|consen 340 IRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQ-------LHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWD 412 (910)
T ss_pred eeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcc-------cccccccccccccchhhhcCCcceeeecccchhhhhc
Confidence 9997 7899999999999999888765433221111 01111111110000000022345555554321 1
Q ss_pred EEEEEe--CCeEEEEEcCCCcc-cccc-----CCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEee---cc
Q 001248 832 YVMSAS--GGKISLFNMMTFKT-MATF-----MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL---KG 900 (1114)
Q Consensus 832 ~l~~~~--dg~i~iwd~~~~~~-~~~~-----~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l---~~ 900 (1114)
-++++. +..++.|+...... ...+ +.....+++++.++ -|++.+.|+..|.|-+|++++|-....+ ..
T Consensus 413 Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~a 491 (910)
T KOG1539|consen 413 NVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPA 491 (910)
T ss_pred ceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccCeeecccccCcc
Confidence 244443 57799999976443 2222 22346799999999 9999999999999999999999888888 58
Q ss_pred cccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEE
Q 001248 901 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFE 979 (1114)
Q Consensus 901 h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd 979 (1114)
|.++|++++...-++.++|++.||.+++||..+..... ... ....+.++..+.....+++ ..|-.|+++|
T Consensus 492 h~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~-----~l~----l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD 562 (910)
T KOG1539|consen 492 HKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKK-----SLR----LGSSITGIVYHRVSDLLAIALDDFSIRVVD 562 (910)
T ss_pred ccCceeEEEecCCCceEEEccCcceEEEEecCCcceee-----eec----cCCCcceeeeeehhhhhhhhcCceeEEEEE
Confidence 99999999998888999999999999999998854211 111 1136788888888888888 5888999999
Q ss_pred cCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCC
Q 001248 980 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1059 (1114)
Q Consensus 980 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d 1059 (1114)
..+.+.++.+. +|+..|++++|||||++|++++.|++|++||+.++.++..+. .. ..++++.|+| +
T Consensus 563 ~~t~kvvR~f~--gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~----vd-------~~~~sls~SP-n 628 (910)
T KOG1539|consen 563 VVTRKVVREFW--GHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL----VD-------SPCTSLSFSP-N 628 (910)
T ss_pred chhhhhhHHhh--ccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe----cC-------CcceeeEECC-C
Confidence 99999999987 899999999999999999999999999999999999998776 22 2356899999 6
Q ss_pred CCeEEEEeCC-CcEEEEeccC
Q 001248 1060 PNEFALGLSD-GGVHVFEPLE 1079 (1114)
Q Consensus 1060 ~~~l~s~~~D-g~v~vW~i~~ 1079 (1114)
|++|+|+..| ..|++|.=..
T Consensus 629 gD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 629 GDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred CCEEEEEEecCceEEEEEchh
Confidence 9999999999 7899997443
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=333.48 Aligned_cols=285 Identities=18% Similarity=0.268 Sum_probs=258.6
Q ss_pred cccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCC
Q 001248 463 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 542 (1114)
Q Consensus 463 ~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 542 (1114)
|-+.+|..+.||.|++ .|+|||.+|.+++|+..+...+.+|.||...|.++.|+|..++..+++++.||++++|++++
T Consensus 173 gd~rPis~~~fS~ds~--~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSK--HLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ 250 (459)
T ss_pred cCCCcceeeEeecCCC--eEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence 4567899999999999 89999999999999999999999999999999999999986567899999999999999999
Q ss_pred CCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcC
Q 001248 543 LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASP 622 (1114)
Q Consensus 543 ~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 622 (1114)
...+..+.+|...|..++|.|+|+ +|++++.|.+-++||+.++..+....+| ...|.
T Consensus 251 e~~l~~l~gH~~RVs~VafHPsG~---------------------~L~TasfD~tWRlWD~~tk~ElL~QEGH--s~~v~ 307 (459)
T KOG0272|consen 251 ETPLQDLEGHLARVSRVAFHPSGK---------------------FLGTASFDSTWRLWDLETKSELLLQEGH--SKGVF 307 (459)
T ss_pred CcchhhhhcchhhheeeeecCCCc---------------------eeeecccccchhhcccccchhhHhhccc--ccccc
Confidence 888888888888777777766665 8999999999999999999888777766 55899
Q ss_pred eEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccC
Q 001248 623 RIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIP 702 (1114)
Q Consensus 623 ~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (1114)
+++|.+||.++++|+.|..-+|||++++ .++..+.
T Consensus 308 ~iaf~~DGSL~~tGGlD~~~RvWDlRtg-r~im~L~-------------------------------------------- 342 (459)
T KOG0272|consen 308 SIAFQPDGSLAATGGLDSLGRVWDLRTG-RCIMFLA-------------------------------------------- 342 (459)
T ss_pred eeEecCCCceeeccCccchhheeecccC-cEEEEec--------------------------------------------
Confidence 9999999999999999999999999988 2222111
Q ss_pred CCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecc
Q 001248 703 GMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQR 782 (1114)
Q Consensus 703 ~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~ 782 (1114)
T Consensus 343 -------------------------------------------------------------------------------- 342 (459)
T KOG0272|consen 343 -------------------------------------------------------------------------------- 342 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCC
Q 001248 783 TERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPA 861 (1114)
Q Consensus 783 ~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~ 861 (1114)
+|..+|.+++|+|+|-.||+|+ |++++|||+.....+.++.+|.+-
T Consensus 343 ---------------------------------gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nl 389 (459)
T KOG0272|consen 343 ---------------------------------GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNL 389 (459)
T ss_pred ---------------------------------ccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccch
Confidence 2677788888888888999998 899999999988889999999999
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 001248 862 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930 (1114)
Q Consensus 862 i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd 930 (1114)
|+.|.|+|..|.+|++++.|++++||...++++++.+.||.+.|.++..++|+.+++|++.|+++++|.
T Consensus 390 VS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 390 VSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred hhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 999999998899999999999999999999999999999999999999999999999999999999995
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-40 Score=328.86 Aligned_cols=285 Identities=19% Similarity=0.299 Sum_probs=259.5
Q ss_pred eccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCC--
Q 001248 354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-- 431 (1114)
Q Consensus 354 ~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd-- 431 (1114)
.++.+.+|..+.||+|++ +||||+-+|.++||+..+...+. +|.||...|.++.|+|.
T Consensus 171 Q~gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~-------------------~l~gH~~~v~~~~fhP~~~ 230 (459)
T KOG0272|consen 171 QVGDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQ-------------------TLRGHTSRVGAAVFHPVDS 230 (459)
T ss_pred hccCCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeE-------------------EEeccccceeeEEEccCCC
Confidence 345788999999999999 59999999999999999987665 58999999999999996
Q ss_pred CCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccC
Q 001248 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 511 (1114)
Q Consensus 432 g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 511 (1114)
+..+|+|+.||++++|++++...+. .+.+|...|..++|.|+|+ +|+|++.|.+-++||+.++..+....||...
T Consensus 231 ~~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~ 305 (459)
T KOG0272|consen 231 DLNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKG 305 (459)
T ss_pred ccceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhcccccc
Confidence 6789999999999999999977666 7999999999999999999 8999999999999999999999999999999
Q ss_pred EEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEE
Q 001248 512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 591 (1114)
Q Consensus 512 v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~ 591 (1114)
|.+++|++ ||.++++||.|..-++||++++.++..+.+|...|.++.|+|+|- .+++
T Consensus 306 v~~iaf~~--DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy---------------------~lAT 362 (459)
T KOG0272|consen 306 VFSIAFQP--DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGY---------------------HLAT 362 (459)
T ss_pred cceeEecC--CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCce---------------------EEee
Confidence 99999865 568999999999999999999999999999999999999888886 6999
Q ss_pred EeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcC-CCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCC
Q 001248 592 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN 670 (1114)
Q Consensus 592 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 670 (1114)
|+.|++++|||++..+.+.++..| ...|+.+.|+| .|.+|++++.|++++||...+. .+++.+.
T Consensus 363 gs~Dnt~kVWDLR~r~~ly~ipAH--~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~-~~~ksLa------------ 427 (459)
T KOG0272|consen 363 GSSDNTCKVWDLRMRSELYTIPAH--SNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW-SPLKSLA------------ 427 (459)
T ss_pred cCCCCcEEEeeecccccceecccc--cchhhheEecccCCeEEEEcccCcceeeecCCCc-ccchhhc------------
Confidence 999999999999999999999877 45799999999 7899999999999999988776 4444443
Q ss_pred CCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCcccc
Q 001248 671 SKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLR 750 (1114)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 750 (1114)
+|
T Consensus 428 ------------------------------------------------------------------------------GH 429 (459)
T KOG0272|consen 428 ------------------------------------------------------------------------------GH 429 (459)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 37
Q ss_pred ccceEEEEEccCcceeeecccCceEEEEe
Q 001248 751 ATKISRLIFTNSGNAILALASNAIHLLWK 779 (1114)
Q Consensus 751 ~~~i~~l~~s~~~~~l~~~~~dg~i~vw~ 779 (1114)
.++|.++.+++|+..+++++.|.++++|.
T Consensus 430 e~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 430 EGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ccceEEEEeccCCceEEEeccCceeeecc
Confidence 88999999999999999999999999984
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=301.74 Aligned_cols=292 Identities=20% Similarity=0.311 Sum_probs=258.4
Q ss_pred eEecc-CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC
Q 001248 352 TRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1114)
Q Consensus 352 ~~~~~-h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1114)
.++|. |...|.++.|++|+++ +++++.||.+.|||.-+..+.+. +.-....|..+||+|
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~-ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtCA~sP 107 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRR-IVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTCAYSP 107 (343)
T ss_pred EEEecccccceeeeEecCCcCe-EEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEEEECC
Confidence 36665 9999999999999996 99999999999999988877663 344566999999999
Q ss_pred CCCeEEEEeCCCeEEEEEccCC--c-eeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeec
Q 001248 431 DGSLFGVAYSRHIVQIYSYHGG--D-EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG 507 (1114)
Q Consensus 431 dg~~las~~~dg~i~iwd~~~~--~-~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 507 (1114)
.|+++|+|+-|+...||++.+. + ..+...++.+|.+-+.|+.|.+|+. |+|++.|.++.+||+++|+.+..|.|
T Consensus 108 Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f~G 184 (343)
T KOG0286|consen 108 SGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVFHG 184 (343)
T ss_pred CCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEecC
Confidence 9999999999999999999865 2 2234447899999999999999776 89999999999999999999999999
Q ss_pred cccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCC
Q 001248 508 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 587 (1114)
Q Consensus 508 h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~ 587 (1114)
|.+.|.++.+.|+ +++.+++|+-|+..++||++.+.....+.+|...|.++.|.|+|.
T Consensus 185 H~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~--------------------- 242 (343)
T KOG0286|consen 185 HTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD--------------------- 242 (343)
T ss_pred CcccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCC---------------------
Confidence 9999999998775 668999999999999999999999999999998888888777775
Q ss_pred EEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccC
Q 001248 588 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT 667 (1114)
Q Consensus 588 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 667 (1114)
-+++|++|++.++||++..+.+..+........|++++||..|++|++|..|.++.+||.-.+ +..-.+
T Consensus 243 afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~-e~vg~L---------- 311 (343)
T KOG0286|consen 243 AFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG-ERVGVL---------- 311 (343)
T ss_pred eeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc-ceEEEe----------
Confidence 699999999999999999999999987777778999999999999999999999999997666 222222
Q ss_pred CCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCc
Q 001248 668 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE 747 (1114)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~ 747 (1114)
T Consensus 312 -------------------------------------------------------------------------------- 311 (343)
T KOG0286|consen 312 -------------------------------------------------------------------------------- 311 (343)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccceEEEEEccCcceeeecccCceEEEEe
Q 001248 748 NLRATKISRLIFTNSGNAILALASNAIHLLWK 779 (1114)
Q Consensus 748 ~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~ 779 (1114)
.+|..+|+++..+|||..+++++.|..++||.
T Consensus 312 ~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 312 AGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 23889999999999999999999999999993
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=319.25 Aligned_cols=586 Identities=14% Similarity=0.171 Sum_probs=396.1
Q ss_pred eccCCCCceEEEEcCCCC---eEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC
Q 001248 354 TLNQGSSPMSMDFHPVQQ---TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1114)
Q Consensus 354 ~~~h~~~v~~v~~spdg~---~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1114)
.-+|..+|+|+.|-|+.+ + +++|+.||.|++|.+......... .+.+|.. .+++++.
T Consensus 50 l~GH~a~VnC~~~l~~s~~~a~-~vsG~sD~~v~lW~l~~~~~~~i~-----------------~~~g~~~--~~~cv~a 109 (764)
T KOG1063|consen 50 LDGHVARVNCVHWLPTSEIVAE-MVSGDSDGRVILWKLRDEYLIKIY-----------------TIQGHCK--ECVCVVA 109 (764)
T ss_pred ccCCccceEEEEEcccccccce-EEEccCCCcEEEEEEeehheEEEE-----------------eecCcce--eEEEEEe
Confidence 334999999999999887 5 899999999999999843333211 3556644 4555543
Q ss_pred CCCeEEEEeCCCeEEEEEccCCceeeeeEeeccc--cCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCC--cceeEee
Q 001248 431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAH--VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG--AKQYIFE 506 (1114)
Q Consensus 431 dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h--~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~ 506 (1114)
......+...|+++.+||.+..+ +.....+.-. ..--.|+++.++.+.++++.|+.+..|.++.-..+ +.+..+.
T Consensus 110 ~~~~~~~~~ad~~v~vw~~~~~e-~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~ 188 (764)
T KOG1063|consen 110 RSSVMTCKAADGTVSVWDKQQDE-VFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELE 188 (764)
T ss_pred eeeEEEeeccCceEEEeecCCCc-eeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEee
Confidence 33333334789999999996554 1111122211 12235777778666557888888888999876544 3456889
Q ss_pred ccccCEEEEeeccCCC-ceEEEEEecCCeEEEEEcCCCCCeeee------cC-CCCeeEEEEEecC----CCeEEeeecc
Q 001248 507 GHEAPVYSVCPHHKEN-IQFIFSTALDGKIKAWLYDNLGSRVDY------EA-PGRWCTTMAYSAD----GTRTYQGFRK 574 (1114)
Q Consensus 507 ~h~~~v~~~~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~------~~-~~~~v~~~~~s~~----g~~~~~~~~~ 574 (1114)
||.+.|.+++|..... .-+|+++|.|..|++|.+.-....... .. ...++..+...-+ -..++.||.+
T Consensus 189 GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeD 268 (764)
T KOG1063|consen 189 GHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHED 268 (764)
T ss_pred ccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCccc
Confidence 9999999999875543 468999999999999987643311100 00 0011111100000 0012234433
Q ss_pred cceeEEEecCCCCEEEEEeCCCeEEEEECCCcc--eEEEe--ccC-CCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccC
Q 001248 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ--LLTSI--DAD-GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 649 (1114)
Q Consensus 575 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~--~~~-~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~ 649 (1114)
-+..+.|+|.+..|++++.|.++.+|...+.. -+... ... +........-|+|+++.+++-+..|..++|...+
T Consensus 269 -WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d 347 (764)
T KOG1063|consen 269 -WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKD 347 (764)
T ss_pred -ceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccC
Confidence 67788888888889999999999999876542 22222 111 2233567899999999999999999999997322
Q ss_pred CccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEE
Q 001248 650 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW 729 (1114)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw 729 (1114)
.. .|
T Consensus 348 ~~----------------------------------------------------------------------------~w 351 (764)
T KOG1063|consen 348 KT----------------------------------------------------------------------------FW 351 (764)
T ss_pred cc----------------------------------------------------------------------------ce
Confidence 20 11
Q ss_pred EeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCcccc
Q 001248 730 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 809 (1114)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~ 809 (1114)
.... -..+|...|+++++.|.|.+|++.+.|.+-|++..-..+. -|.-..
T Consensus 352 ~~~~------------~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~-------------~wHEia----- 401 (764)
T KOG1063|consen 352 TQEP------------VISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQ-------------EWHEIA----- 401 (764)
T ss_pred eecc------------ccccccccceeeeecCCCCEEEEeccccceeeeccccccc-------------ceeeec-----
Confidence 1100 0034889999999999999999999999999875321110 011100
Q ss_pred ccCCCCCCCCCccEEEEeeCCCEEEEEeC-CeEEEEEcCC----------------------------------------
Q 001248 810 NDVTDSNPEEAVPCFALSKNDSYVMSASG-GKISLFNMMT---------------------------------------- 848 (1114)
Q Consensus 810 ~~~~~~~~~~~v~~v~~s~d~~~l~~~~d-g~i~iwd~~~---------------------------------------- 848 (1114)
...-|...++|+++-+....+++|.| .-+|+|+...
T Consensus 402 ---RPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e 478 (764)
T KOG1063|consen 402 ---RPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGE 478 (764)
T ss_pred ---ccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccc
Confidence 01126777788887765555666664 4577776410
Q ss_pred ---Cc---------------------------------cccccCCCCCCeEEEEEecCCCcEEEEEeCCC-----cEEEE
Q 001248 849 ---FK---------------------------------TMATFMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIY 887 (1114)
Q Consensus 849 ---~~---------------------------------~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg-----~v~iw 887 (1114)
|. .++.+-+|..+|.+++.+| +++++|+++... .|++|
T Consensus 479 ~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw 557 (764)
T KOG1063|consen 479 TNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLW 557 (764)
T ss_pred cccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEE
Confidence 00 0112345778899999999 999999998543 69999
Q ss_pred EcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEE
Q 001248 888 NVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 967 (1114)
Q Consensus 888 d~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l 967 (1114)
+..+...+..+.+|+-.|+.++|||||++|+++|+|+++.+|+.......... ......|. .-|..+.|+||++++
T Consensus 558 ~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~-fa~~k~Ht---RIIWdcsW~pde~~F 633 (764)
T KOG1063|consen 558 NTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFR-FACLKAHT---RIIWDCSWSPDEKYF 633 (764)
T ss_pred eccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhh-hccccccc---eEEEEcccCccccee
Confidence 99999888999999999999999999999999999999999998664443333 22234444 378999999999999
Q ss_pred EE-EeCCeEEEEEcCCC--ceeeeeecCCCCcCeeEEEECC-----CCCEEEEEEcCCeEEEEEcCCCee-----eEEeC
Q 001248 968 LV-VHETQLAIFETTKL--ECVKQWVPRESSAPITHATFSC-----DSQLVYACFLDATVCVFSAANLKL-----RCRIN 1034 (1114)
Q Consensus 968 ~~-~~d~~i~iwd~~~~--~~~~~~~~~~h~~~v~~l~~s~-----dg~~l~s~s~Dg~I~vwd~~~~~~-----~~~~~ 1034 (1114)
++ +.|++|++|..... +.+..+....++..|+.+++.| .+..+++|-..|.|.+|....... ...+.
T Consensus 634 aTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~ 713 (764)
T KOG1063|consen 634 ATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLD 713 (764)
T ss_pred EEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeec
Confidence 99 69999999999888 6666655567899999999977 223678899999999999651111 01111
Q ss_pred CCcccCCCCCCCCccceEEEecCCC-------CC--eEEEEeCCCcEEEEecc
Q 001248 1035 PSAYLPAGVSSSNVHPLVIAAHPQE-------PN--EFALGLSDGGVHVFEPL 1078 (1114)
Q Consensus 1035 ~~~~~~~~~~~~~v~~~~~~~~~~d-------~~--~l~s~~~Dg~v~vW~i~ 1078 (1114)
.......+|.+. |. .+.|.|.. .. .|++|++|.+++++++.
T Consensus 714 ~~l~~~~~~~~a-V~--rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 714 TRLCATIGPDSA-VN--RLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred cccccccChHHh-hh--eeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 111111122222 55 78888641 22 36999999999999874
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=314.97 Aligned_cols=464 Identities=17% Similarity=0.263 Sum_probs=352.2
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
+.+.|.++.|+|...+ +.++-.+|.|.|||.++...+.. +.-..-+|++..|-+..++++
T Consensus 12 rSdRVKsVd~HPtePw-~la~LynG~V~IWnyetqtmVks-------------------feV~~~PvRa~kfiaRknWiv 71 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPW-ILAALYNGDVQIWNYETQTMVKS-------------------FEVSEVPVRAAKFIARKNWIV 71 (794)
T ss_pred cCCceeeeecCCCCce-EEEeeecCeeEEEecccceeeee-------------------eeecccchhhheeeeccceEE
Confidence 8999999999999997 66677899999999999877754 222345899999999999999
Q ss_pred EEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCC-cceeEeeccccCEEEE
Q 001248 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPVYSV 515 (1114)
Q Consensus 437 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~ 515 (1114)
+|++|+.|+||+..+++.++ .+..|.+-|.+++..|... +++|+|+|-+|++||.+.+ .+.+++.||...|.++
T Consensus 72 ~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv 146 (794)
T KOG0276|consen 72 TGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQV 146 (794)
T ss_pred EecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEE
Confidence 99999999999999998776 7999999999999999999 8999999999999999865 5778999999999999
Q ss_pred eeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCC
Q 001248 516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 595 (1114)
Q Consensus 516 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 595 (1114)
+|.|..+ +.+++++.|++|++|.+....+.+++.+|...|.++.+-+.|. ..++++|++|
T Consensus 147 ~fnPkD~-ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gd-------------------kpylIsgaDD 206 (794)
T KOG0276|consen 147 AFNPKDP-NTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGD-------------------KPYLISGADD 206 (794)
T ss_pred EecCCCc-cceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCC-------------------cceEEecCCC
Confidence 9998655 7999999999999999999999999999999888888877653 3579999999
Q ss_pred CeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCc
Q 001248 596 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTI 675 (1114)
Q Consensus 596 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (1114)
..|+|||..+..+++++.+|.+ .|..+.|+|.=.++++|++||+++||+..+- +....+.
T Consensus 207 ~tiKvWDyQtk~CV~TLeGHt~--Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tLn----------------- 266 (794)
T KOG0276|consen 207 LTIKVWDYQTKSCVQTLEGHTN--NVSFVFFHPELPIIISGSEDGTVRIWNSKTY-KLEKTLN----------------- 266 (794)
T ss_pred ceEEEeecchHHHHHHhhcccc--cceEEEecCCCcEEEEecCCccEEEecCcce-ehhhhhh-----------------
Confidence 9999999999999999998754 7999999999999999999999999986554 1111110
Q ss_pred cchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceE
Q 001248 676 SPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKIS 755 (1114)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~ 755 (1114)
-...++.
T Consensus 267 -------------------------------------------------------------------------~gleRvW 273 (794)
T KOG0276|consen 267 -------------------------------------------------------------------------YGLERVW 273 (794)
T ss_pred -------------------------------------------------------------------------cCCceEE
Confidence 0235677
Q ss_pred EEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEE
Q 001248 756 RLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMS 835 (1114)
Q Consensus 756 ~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~ 835 (1114)
+++-.+.++.++.|.++|.+.+= -......+.+++.|+.+-+
T Consensus 274 ~I~~~k~~~~i~vG~Deg~i~v~--------------------------------------lgreeP~vsMd~~gKIiwa 315 (794)
T KOG0276|consen 274 CIAAHKGDGKIAVGFDEGSVTVK--------------------------------------LGREEPAVSMDSNGKIIWA 315 (794)
T ss_pred EEeecCCCCeEEEeccCCcEEEE--------------------------------------ccCCCCceeecCCccEEEE
Confidence 77777777778888888887651 1122234555566655444
Q ss_pred EeC--CeEEEE------EcCCCccc----cccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeeccccc
Q 001248 836 ASG--GKISLF------NMMTFKTM----ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 903 (1114)
Q Consensus 836 ~~d--g~i~iw------d~~~~~~~----~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~ 903 (1114)
... -.+.+- ++..|+.+ +.+-...-....++-+| +|+++++++ ||.-.||..-..+ ..+.+
T Consensus 316 ~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsP-NGrfV~Vcg-dGEyiIyTala~R-----nK~fG 388 (794)
T KOG0276|consen 316 VHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSP-NGRFVVVCG-DGEYIIYTALALR-----NKAFG 388 (794)
T ss_pred cCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCC-CCcEEEEec-CccEEEEEeeehh-----hcccc
Confidence 331 112222 22233322 11111122235678889 898887665 8888888743221 12445
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCC
Q 001248 904 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL 983 (1114)
Q Consensus 904 ~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~ 983 (1114)
.-....|++|.+..|+--.++.|+++ .+.+..+. +. .-..+.+--.|.+|.+..++.+++||..++
T Consensus 389 ~~~eFvw~~dsne~avRes~~~vki~--knfke~ks--i~----------~~~~~e~i~gg~Llg~~ss~~~~fydW~~~ 454 (794)
T KOG0276|consen 389 SGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHKS--IR----------PDMSAEGIFGGPLLGVRSSDFLCFYDWESG 454 (794)
T ss_pred cceeEEEcCCCCeEEEEecCCceEEE--ecceeccc--cc----------cccceeeecCCceEEEEeCCeEEEEEcccc
Confidence 56778999998888888888999998 33221110 00 011223333566777788999999999999
Q ss_pred ceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEE
Q 001248 984 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1023 (1114)
Q Consensus 984 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd 1023 (1114)
+.++.+.. ....+.|+.+|.+++.++.|. .+|+.
T Consensus 455 ~lVrrI~v-----~~k~v~w~d~g~lVai~~d~S-fyil~ 488 (794)
T KOG0276|consen 455 ELVRRIEV-----TSKHVYWSDNGELVAIAGDDS-FYILK 488 (794)
T ss_pred eEEEEEee-----ccceeEEecCCCEEEEEecCc-eeEEE
Confidence 99998863 456789999999998887554 44443
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=318.12 Aligned_cols=543 Identities=14% Similarity=0.197 Sum_probs=407.1
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
+.+.|+|++-..+-- +++ ....|.+|-- |+.+.. ++.+|...|.-+. +=|.+++
T Consensus 75 lp~~I~alas~~~~v---y~A-~g~~i~~~~r--gk~i~~------------------~~~~~~a~v~~l~--~fGe~li 128 (910)
T KOG1539|consen 75 LPDKITALASDKDYV---YVA-SGNKIYAYAR--GKHIRH------------------TTLLHGAKVHLLL--PFGEHLI 128 (910)
T ss_pred CCCceEEEEecCceE---EEe-cCcEEEEEEc--cceEEE------------------EeccccceEEEEe--eecceEE
Confidence 788999998766643 332 2456666653 333321 4667777787776 3489999
Q ss_pred EEeCCCeEEEEEccCC-ceeeeeEeec-cccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEE
Q 001248 437 VAYSRHIVQIYSYHGG-DEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 514 (1114)
Q Consensus 437 s~~~dg~i~iwd~~~~-~~~~~~~~l~-~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 514 (1114)
++..++.+.||+..++ +......++. .....|+++. .|..---.++.|+.+|.+++|++++++.+++++++...|++
T Consensus 129 a~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ 207 (910)
T KOG1539|consen 129 AVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITA 207 (910)
T ss_pred EEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeE
Confidence 9999999999999884 2211101222 2222366654 34321114889999999999999999999999999999999
Q ss_pred EeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeC
Q 001248 515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 594 (1114)
Q Consensus 515 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 594 (1114)
+.-+ |--..++.|..+|+|.+++++..+.+.++....+.|++++|..||.. .+++++.
T Consensus 208 ieqs--PaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p--------------------~las~~~ 265 (910)
T KOG1539|consen 208 IEQS--PALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNP--------------------LLASGRS 265 (910)
T ss_pred eccC--CcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCe--------------------eEEeccC
Confidence 9844 44469999999999999999999999999888889999999999873 5788888
Q ss_pred CCeEEEEECCCcceEEEec-cCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCc---cceeeccccccccccCCCC
Q 001248 595 DFSIKFWDMDSVQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI---RLLRTFENLAYDASRTSEN 670 (1114)
Q Consensus 595 dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~ 670 (1114)
.|.+-+||++..+.+..+. .| ...+....|.|....+++++.|+.+++|-..++. +.++.-.||..+..
T Consensus 266 ~G~m~~wDLe~kkl~~v~~nah--~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~----- 338 (910)
T KOG1539|consen 266 NGDMAFWDLEKKKLINVTRNAH--YGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPS----- 338 (910)
T ss_pred CceEEEEEcCCCeeeeeeeccc--cCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCch-----
Confidence 8999999999888776665 34 4468899999999999999999999998666442 34444456655433
Q ss_pred CCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccc--------
Q 001248 671 SKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS-------- 742 (1114)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~-------- 742 (1114)
++..++ ..+..+++++.|++.+.+.+...........
T Consensus 339 ---~irfy~--------------------------------~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~k 383 (910)
T KOG1539|consen 339 ---CIRFYG--------------------------------SQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAK 383 (910)
T ss_pred ---heeeec--------------------------------cCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccc
Confidence 222221 3466788888899888887654322222111
Q ss_pred -cc--cCccccccceEEEEEccC-----cceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccc--cccC
Q 001248 743 -LR--LPENLRATKISRLIFTNS-----GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM--TNDV 812 (1114)
Q Consensus 743 -~~--~~~~~~~~~i~~l~~s~~-----~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~--~~~~ 812 (1114)
.. ......-.+|..+++... .+.+.+.-.+...+.|+++.... |+.. ...+
T Consensus 384 k~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~-------------------G~~~L~~~~~ 444 (910)
T KOG1539|consen 384 KVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTS-------------------GRHVLDPKRF 444 (910)
T ss_pred cccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCccc-------------------ccEEecCccc
Confidence 00 011123345666666543 23344444457888888764321 1111 0001
Q ss_pred CCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCcccccc---CCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 001248 813 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATF---MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 888 (1114)
Q Consensus 813 ~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~---~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd 888 (1114)
. .....+++++.++.|++.+.|. .|.|-+|++++|-....+ ..|..+|+.++... -++.+++++.+|-+.+||
T Consensus 445 ~--~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~ 521 (910)
T KOG1539|consen 445 K--KDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWD 521 (910)
T ss_pred c--ccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC-CCceEEEccCcceEEEEe
Confidence 1 1456789999999999999998 899999999999988888 58999999999987 788999999999999999
Q ss_pred cccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEE
Q 001248 889 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 968 (1114)
Q Consensus 889 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~ 968 (1114)
..+..++..++- ...++++..+.....+|.+..|-.|+++|+.+. ...+.+.||.. .|+.++|||||++|+
T Consensus 522 f~~k~l~~~l~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~-----kvvR~f~gh~n---ritd~~FS~DgrWli 592 (910)
T KOG1539|consen 522 FKKKVLKKSLRL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTR-----KVVREFWGHGN---RITDMTFSPDGRWLI 592 (910)
T ss_pred cCCcceeeeecc-CCCcceeeeeehhhhhhhhcCceeEEEEEchhh-----hhhHHhhcccc---ceeeeEeCCCCcEEE
Confidence 999887777763 456888999988899999999999999999983 45667777774 899999999999999
Q ss_pred E-EeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcC-CeEEEEEc
Q 001248 969 V-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-ATVCVFSA 1024 (1114)
Q Consensus 969 ~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D-g~I~vwd~ 1024 (1114)
+ +.|++|++||+.++.++..+.. ..+.+++.|||+|.+||++..| .-|++|.=
T Consensus 593 sasmD~tIr~wDlpt~~lID~~~v---d~~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 593 SASMDSTIRTWDLPTGTLIDGLLV---DSPCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred EeecCCcEEEEeccCcceeeeEec---CCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 9 6899999999999999988865 6789999999999999999998 56999963
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=287.32 Aligned_cols=258 Identities=21% Similarity=0.319 Sum_probs=220.9
Q ss_pred eEecc-CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC
Q 001248 352 TRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1114)
Q Consensus 352 ~~~~~-h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1114)
..++. |++.|+.++..+.+..++++++.|.++.+|++.......- .....+.||+..|..++.++
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G--------------~~~r~~~GHsH~v~dv~~s~ 73 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYG--------------VPVRRLTGHSHFVSDVVLSS 73 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccC--------------ceeeeeeccceEecceEEcc
Confidence 34555 9999999999999888999999999999999876532211 11125889999999999999
Q ss_pred CCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeecc--
Q 001248 431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH-- 508 (1114)
Q Consensus 431 dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h-- 508 (1114)
||.+.++++.|+++++||+.+|+..+ .|.||...|.+++|++|++ .++||+.|++|++||+. |.+..++..+
T Consensus 74 dg~~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~-g~ck~t~~~~~~ 147 (315)
T KOG0279|consen 74 DGNFALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTL-GVCKYTIHEDSH 147 (315)
T ss_pred CCceEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeec-ccEEEEEecCCC
Confidence 99999999999999999999997665 6889999999999999999 59999999999999966 5556666544
Q ss_pred ccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCE
Q 001248 509 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 588 (1114)
Q Consensus 509 ~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~ 588 (1114)
.+.|.+++|+|..+..+|++++.|+++++||+++.+....+.+|.+.+..+++||||. .
T Consensus 148 ~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs---------------------l 206 (315)
T KOG0279|consen 148 REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS---------------------L 206 (315)
T ss_pred cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCC---------------------E
Confidence 7999999999998778999999999999999999888888888888888888888876 6
Q ss_pred EEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCcccee
Q 001248 589 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR 655 (1114)
Q Consensus 589 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~ 655 (1114)
.++|+.||.+.+||++.++.++.+.. ...|.+++|+|+...|+.+.. ..|+|||+.++ ..+.
T Consensus 207 casGgkdg~~~LwdL~~~k~lysl~a---~~~v~sl~fspnrywL~~at~-~sIkIwdl~~~-~~v~ 268 (315)
T KOG0279|consen 207 CASGGKDGEAMLWDLNEGKNLYSLEA---FDIVNSLCFSPNRYWLCAATA-TSIKIWDLESK-AVVE 268 (315)
T ss_pred EecCCCCceEEEEEccCCceeEeccC---CCeEeeEEecCCceeEeeccC-CceEEEeccch-hhhh
Confidence 88899999999999999999888864 356999999999877776655 56999999887 4443
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=310.83 Aligned_cols=549 Identities=17% Similarity=0.222 Sum_probs=386.5
Q ss_pred eEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCC---eEEEE
Q 001248 362 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS---LFGVA 438 (1114)
Q Consensus 362 ~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~---~las~ 438 (1114)
....|.|.+. +|.| ....|.+||........ .+.||..+|+|+.|-|+.+ ++++|
T Consensus 18 ~v~sw~~~~~--vafG-a~~~Iav~dp~k~~i~t-------------------~l~GH~a~VnC~~~l~~s~~~a~~vsG 75 (764)
T KOG1063|consen 18 KVSSWGPGGL--VAFG-AGPAIAVADPEKILIVT-------------------TLDGHVARVNCVHWLPTSEIVAEMVSG 75 (764)
T ss_pred ccccccccce--EEec-CCceEEEeCcccceeEE-------------------eccCCccceEEEEEcccccccceEEEc
Confidence 3445566653 5555 46789999987653222 5899999999999999888 89999
Q ss_pred eCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCc--ceeEeeccccCEEEEe
Q 001248 439 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA--KQYIFEGHEAPVYSVC 516 (1114)
Q Consensus 439 ~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~h~~~v~~~~ 516 (1114)
+.|+.|++|.++. +.+....++.+|...+.|+. .... .......|+++.+||.+..+ +...+.-..+.+..+|
T Consensus 76 ~sD~~v~lW~l~~-~~~~~i~~~~g~~~~~~cv~--a~~~--~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLc 150 (764)
T KOG1063|consen 76 DSDGRVILWKLRD-EYLIKIYTIQGHCKECVCVV--ARSS--VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLC 150 (764)
T ss_pred cCCCcEEEEEEee-hheEEEEeecCcceeEEEEE--eeee--EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHH
Confidence 9999999999994 34556667888776655554 2222 22223789999999985555 2233332223333333
Q ss_pred --eccCCCceEEEEEecCCeEEEEEcCCC--CCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEE
Q 001248 517 --PHHKENIQFIFSTALDGKIKAWLYDNL--GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 592 (1114)
Q Consensus 517 --~~~~~~~~~l~s~~~d~~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~ 592 (1114)
+.+.++.-+++.|+.+..|.++.-... .....+.+|.+.|.+++|...+. +.-+|+++
T Consensus 151 L~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~------------------~~~~laS~ 212 (764)
T KOG1063|consen 151 LAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGG------------------DDLLLASS 212 (764)
T ss_pred HhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCC------------------CcEEEEec
Confidence 334333335666677777888755432 33457889999999999887654 22368889
Q ss_pred eCCCeEEEEECCCcc---------------------eEEEec--------cCCCCCCcCeEEEcCCCCEEEEEeCCCcEE
Q 001248 593 GDDFSIKFWDMDSVQ---------------------LLTSID--------ADGGLPASPRIRFNKDGCLLAVSTNDNGIK 643 (1114)
Q Consensus 593 ~~dg~i~iwd~~~~~---------------------~~~~~~--------~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~ 643 (1114)
+.|..||||.+.-+. ....+. ..+|.+.|.++.|+|.+..|++++.|.++.
T Consensus 213 SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmi 292 (764)
T KOG1063|consen 213 SQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMI 292 (764)
T ss_pred CCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceE
Confidence 999999999864322 010111 125567899999999998889999999999
Q ss_pred EEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCC
Q 001248 644 ILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESN 723 (1114)
Q Consensus 644 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 723 (1114)
+|...+..-....
T Consensus 293 iW~pd~~tGiWv~------------------------------------------------------------------- 305 (764)
T KOG1063|consen 293 IWKPDENTGIWVD------------------------------------------------------------------- 305 (764)
T ss_pred EEecCCccceEEE-------------------------------------------------------------------
Confidence 9975443111000
Q ss_pred CceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCC
Q 001248 724 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP 803 (1114)
Q Consensus 724 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~ 803 (1114)
.+++=.+ .+....-.+..|+|+++.+++-+..|..++|.... ...|...
T Consensus 306 -~vRlGe~----------------gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d--------------~~~w~~~ 354 (764)
T KOG1063|consen 306 -VVRLGEV----------------GGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKD--------------KTFWTQE 354 (764)
T ss_pred -EEEeecc----------------cccccceeeEEEcCCCCEEEEecccCcEEEEeccC--------------ccceeec
Confidence 0000000 01344567888999999999999999999997221 1123221
Q ss_pred CCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCC----CccccccCCCCCCeEEEEEecCCCcEEEEE
Q 001248 804 SGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT----FKTMATFMPPPPAATFLAFHPQDNNIIAIG 878 (1114)
Q Consensus 804 ~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~sp~d~~~la~g 878 (1114)
....+|...|+.++|+|.|++|.+.+ |-+-|+|-.-. ...+..-+.|...++|++|-+ ....+++|
T Consensus 355 --------~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn-~~~~FVSg 425 (764)
T KOG1063|consen 355 --------PVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN-EDLQFVSG 425 (764)
T ss_pred --------cccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehcc-CCceeeec
Confidence 11135999999999999999999999 99999987652 123344466888899999998 57788889
Q ss_pred eCCCcEEEEEcc-------------------------------------------cce----------------------
Q 001248 879 MDDSSIQIYNVR-------------------------------------------VDE---------------------- 893 (1114)
Q Consensus 879 ~~dg~v~iwd~~-------------------------------------------~~~---------------------- 893 (1114)
.+...+|+|+.. +|.
T Consensus 426 AdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~ 505 (764)
T KOG1063|consen 426 ADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPT 505 (764)
T ss_pred ccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCCh
Confidence 999999999751 010
Q ss_pred -----------EEEeecccccCeeEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCccccccccccCCCCCCCCCCceE
Q 001248 894 -----------VKSKLKGHSKRITGLAFSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTR 957 (1114)
Q Consensus 894 -----------~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 957 (1114)
.+.++.||.-.|++++.+|+|+++||++... .|++|+..+... .+.+.+|.. .|+.
T Consensus 506 EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~-----~~~L~~HsL---TVT~ 577 (764)
T KOG1063|consen 506 EDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ-----VQELEGHSL---TVTR 577 (764)
T ss_pred HHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh-----hheecccce---EEEE
Confidence 1123458999999999999999999998764 489999998543 445667764 8999
Q ss_pred EEEccCCcEEEE-EeCCeEEEEEcCCCcee--eeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCC--eeeEE
Q 001248 958 VQFHQDQIHFLV-VHETQLAIFETTKLECV--KQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL--KLRCR 1032 (1114)
Q Consensus 958 v~fspdg~~l~~-~~d~~i~iwd~~~~~~~--~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~--~~~~~ 1032 (1114)
++|||||++|++ +.|+++.+|........ +--....|..-|.+..|+||+.+++|+|.|++|+||..... +.+.+
T Consensus 578 l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~ 657 (764)
T KOG1063|consen 578 LAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISR 657 (764)
T ss_pred EEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhh
Confidence 999999999998 89999999998544221 11114689999999999999999999999999999999888 44444
Q ss_pred eCCCcccCCCCCCCCccceEEEecCCCCC----eEEEEeCCCcEEEEecc
Q 001248 1033 INPSAYLPAGVSSSNVHPLVIAAHPQEPN----EFALGLSDGGVHVFEPL 1078 (1114)
Q Consensus 1033 ~~~~~~~~~~~~~~~v~~~~~~~~~~d~~----~l~s~~~Dg~v~vW~i~ 1078 (1114)
+. .++. +..|. +++|.|.+.+ .+++|-+.|.|.+|+..
T Consensus 658 ~a---~~~~---~~aVT--Av~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 658 FA---CLKF---SLAVT--AVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred hc---hhcc---CCcee--eEEeeccccccccceEEEEecccEEEEEecc
Confidence 32 1222 22245 6666664443 78999999999999976
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-36 Score=285.08 Aligned_cols=297 Identities=15% Similarity=0.219 Sum_probs=250.5
Q ss_pred cccccceEEEEEccC-cceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEE
Q 001248 748 NLRATKISRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL 826 (1114)
Q Consensus 748 ~~~~~~i~~l~~s~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~ 826 (1114)
.+|.+.|+.++..+. ...+++++.|..+.+|++... |...|..... +++ |...|..++.
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-----------------d~~~G~~~r~-~~G--HsH~v~dv~~ 71 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD-----------------DIKYGVPVRR-LTG--HSHFVSDVVL 71 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC-----------------ccccCceeee-eec--cceEecceEE
Confidence 459999999999887 556788899999999998743 2334444433 444 9999999999
Q ss_pred eeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecc-cccC
Q 001248 827 SKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG-HSKR 904 (1114)
Q Consensus 827 s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~-h~~~ 904 (1114)
++||++.++++ |+++++||+.+++..+.|.+|...|.+++|++ |++.+++|+.|.+|.+|+...........+ |++-
T Consensus 72 s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~W 150 (315)
T KOG0279|consen 72 SSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREW 150 (315)
T ss_pred ccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecccEEEEEecCCCcCc
Confidence 99999999999 99999999999999999999999999999999 899999999999999999876543333332 3788
Q ss_pred eeEEEEcCC--CCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcC
Q 001248 905 ITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETT 981 (1114)
Q Consensus 905 V~~l~~s~d--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~ 981 (1114)
|+++.|+|. ..+|+++|.|++|++||+++.+ ....+.+|. +.++.+++||||..+++ +.||.+.+||++
T Consensus 151 VscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~-----l~~~~~gh~---~~v~t~~vSpDGslcasGgkdg~~~LwdL~ 222 (315)
T KOG0279|consen 151 VSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ-----LRTTFIGHS---GYVNTVTVSPDGSLCASGGKDGEAMLWDLN 222 (315)
T ss_pred EEEEEEcCCCCCcEEEEccCCceEEEEccCCcc-----hhhcccccc---ccEEEEEECCCCCEEecCCCCceEEEEEcc
Confidence 999999998 7899999999999999999843 455556665 48999999999999999 689999999999
Q ss_pred CCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCC
Q 001248 982 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN 1061 (1114)
Q Consensus 982 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~ 1061 (1114)
.++++..+ +|...|.+++|+|+.-+|+.+. +..|+|||++++..+..+.+..-.+ ......+.+++++|++ ||.
T Consensus 223 ~~k~lysl---~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~-s~~~~~~~clslaws~-dG~ 296 (315)
T KOG0279|consen 223 EGKNLYSL---EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGP-SSKAGDPICLSLAWSA-DGQ 296 (315)
T ss_pred CCceeEec---cCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhcccccccc-ccccCCcEEEEEEEcC-CCc
Confidence 99997776 6789999999999987777664 6679999999999998887554444 2234457889999999 799
Q ss_pred eEEEEeCCCcEEEEeccC
Q 001248 1062 EFALGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1062 ~l~s~~~Dg~v~vW~i~~ 1079 (1114)
.|+.|..|+.|++|.+..
T Consensus 297 tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 297 TLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred EEEeeecCCcEEEEEeec
Confidence 999999999999999853
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=296.03 Aligned_cols=508 Identities=19% Similarity=0.261 Sum_probs=368.5
Q ss_pred eeEeccCCCCceEEEEcCCCCeEEEEEecCC--------cEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCC
Q 001248 351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVG--------DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVS 422 (1114)
Q Consensus 351 ~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg--------~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~ 422 (1114)
....++|++.|.|++.+||.-+ +++|...| .|+|||..+-..+. ++..-...
T Consensus 97 Qr~y~GH~ddikc~~vHPdri~-vatGQ~ag~~g~~~~phvriWdsv~L~TL~-------------------V~g~f~~G 156 (626)
T KOG2106|consen 97 QRHYLGHNDDIKCMAVHPDRIR-VATGQGAGTSGRPLQPHVRIWDSVTLSTLH-------------------VIGFFDRG 156 (626)
T ss_pred cccccCCCCceEEEeecCCcee-eccCcccccCCCcCCCeeeecccccceeee-------------------eecccccc
Confidence 3467789999999999999884 88887766 39999977766555 34455668
Q ss_pred eeEEEEcC--CCCeEEEE--eCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCC
Q 001248 423 VNRVIWSP--DGSLFGVA--YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 498 (1114)
Q Consensus 423 V~~l~~sp--dg~~las~--~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~ 498 (1114)
|.|++||+ .|.+|+.. +.+..+.+||+..+.... .....++.|....|.|.+.. ++++++ .+.+..|+++.
T Consensus 157 V~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~---~vk~sne~v~~a~FHPtd~n-liit~G-k~H~~Fw~~~~ 231 (626)
T KOG2106|consen 157 VTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLG---PVKTSNEVVFLATFHPTDPN-LIITCG-KGHLYFWTLRG 231 (626)
T ss_pred ceeeeecccCCCceEEEecCCCccccchhhchhhhccC---cceeccceEEEEEeccCCCc-EEEEeC-CceEEEEEccC
Confidence 99999998 45566654 445679999999877665 34445678999999999987 567766 57999999998
Q ss_pred CcceeE---eecc-ccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecc
Q 001248 499 GAKQYI---FEGH-EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1114)
Q Consensus 499 ~~~~~~---~~~h-~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~ 574 (1114)
+...++ +..+ ...|.+++|.+.. -+++|..+|.|.+|+..+.........|.+.|.+++...+|.
T Consensus 232 ~~l~k~~~~fek~ekk~Vl~v~F~eng---dviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-------- 300 (626)
T KOG2106|consen 232 GSLVKRQGIFEKREKKFVLCVTFLENG---DVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-------- 300 (626)
T ss_pred CceEEEeeccccccceEEEEEEEcCCC---CEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc--------
Confidence 876553 3333 3668899976554 489999999999999977655555558888999999988887
Q ss_pred cceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccce
Q 001248 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 654 (1114)
Q Consensus 575 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~ 654 (1114)
|++|+.|..|..|| ..-+.++..+.+...+.++.++=...+ |++|...+.|..=.+.++....
T Consensus 301 --------------llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~~~f~~~ 363 (626)
T KOG2106|consen 301 --------------LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTTRNFILQGTLENGFTLT 363 (626)
T ss_pred --------------EeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCc--EEEeeccceEEEeeecCCceEE
Confidence 88899999999999 444555566656656677766654433 6667665555443333331110
Q ss_pred eeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccC
Q 001248 655 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 734 (1114)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~ 734 (1114)
.
T Consensus 364 v------------------------------------------------------------------------------- 364 (626)
T KOG2106|consen 364 V------------------------------------------------------------------------------- 364 (626)
T ss_pred E-------------------------------------------------------------------------------
Confidence 0
Q ss_pred CCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCC
Q 001248 735 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 814 (1114)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~ 814 (1114)
.+|......++..|+...+++++.|+.+++|+-.. -+|...
T Consensus 365 -------------~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k---------------~~wt~~----------- 405 (626)
T KOG2106|consen 365 -------------QGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHK---------------LEWTKI----------- 405 (626)
T ss_pred -------------EecccceeeEEcCCChhheeeccCcceEEEccCCc---------------eeEEEE-----------
Confidence 23667788899999999999999999999997110 122211
Q ss_pred CCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc-
Q 001248 815 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD- 892 (1114)
Q Consensus 815 ~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~- 892 (1114)
...++.|+.|+|.| .+|.|. .|...+.|.++...+..-. ...++++++|+| +|.+||+|+.|+.|+||.+..+
T Consensus 406 --~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d~~~ls~v~ysp-~G~~lAvgs~d~~iyiy~Vs~~g 480 (626)
T KOG2106|consen 406 --IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-DNEQLSVVRYSP-DGAFLAVGSHDNHIYIYRVSANG 480 (626)
T ss_pred --ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-cCCceEEEEEcC-CCCEEEEecCCCeEEEEEECCCC
Confidence 45678899999999 888988 8999999999855554444 378899999999 9999999999999999998753
Q ss_pred eEEEee-cccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEe
Q 001248 893 EVKSKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH 971 (1114)
Q Consensus 893 ~~~~~l-~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~ 971 (1114)
...... +.|..+|+.+.||+|+++|.+-+.|-.|..|.-.. ..... ++..+.|....
T Consensus 481 ~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~--~~~~t-------------s~kDvkW~t~~------- 538 (626)
T KOG2106|consen 481 RKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSE--CKQIT-------------SVKDVKWATYT------- 538 (626)
T ss_pred cEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcccc--Ccccc-------------eecceeeeeeE-------
Confidence 222222 22448999999999999999999999999993322 11110 12333332211
Q ss_pred CCeEEEEEcCCCceeeee--ecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCcc
Q 001248 972 ETQLAIFETTKLECVKQW--VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVH 1049 (1114)
Q Consensus 972 d~~i~iwd~~~~~~~~~~--~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 1049 (1114)
|.--| ....|+..|..++-+.+.++||+|...|.|++|...--+....+. .+. +|.+. +.
T Consensus 539 -------------c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~h--e~~--ghs~~-vt 600 (626)
T KOG2106|consen 539 -------------CTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSH--EYG--GHSSH-VT 600 (626)
T ss_pred -------------EEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccce--eec--cccce-eE
Confidence 11111 113557778888999999999999999999999987655543322 222 33333 44
Q ss_pred ceEEEecCCCCCeEEEEeCCCcEEEEec
Q 001248 1050 PLVIAAHPQEPNEFALGLSDGGVHVFEP 1077 (1114)
Q Consensus 1050 ~~~~~~~~~d~~~l~s~~~Dg~v~vW~i 1077 (1114)
+++|.-.| ..+++.+.|.+|..|++
T Consensus 601 --~V~Fl~~d-~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 601 --NVAFLCKD-SHLISTGKDTSIMQWRL 625 (626)
T ss_pred --EEEEeeCC-ceEEecCCCceEEEEEe
Confidence 89999865 55555559999999997
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=291.17 Aligned_cols=339 Identities=17% Similarity=0.249 Sum_probs=285.1
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw 494 (1114)
.|..|++.|.+++.+|+.+++|+|+.|....||++.+|.... .+.+|...|+++.||.||. +||||+.+|.|+||
T Consensus 59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~---eltgHKDSVt~~~Fshdgt--lLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG---ELTGHKDSVTCCSFSHDGT--LLATGDMSGKVLVF 133 (399)
T ss_pred ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee---EecCCCCceEEEEEccCce--EEEecCCCccEEEE
Confidence 478999999999999999999999999999999999998554 7899999999999999999 89999999999999
Q ss_pred eCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecc
Q 001248 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1114)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~ 574 (1114)
...++.....+......+.=+.|+|.. .+|+.|+.||.+.+|.+.+......+.+|..++++-.|.|+|+
T Consensus 134 ~~stg~~~~~~~~e~~dieWl~WHp~a--~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGK-------- 203 (399)
T KOG0296|consen 134 KVSTGGEQWKLDQEVEDIEWLKWHPRA--HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGK-------- 203 (399)
T ss_pred EcccCceEEEeecccCceEEEEecccc--cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCc--------
Confidence 999999998887777888889998854 7999999999999999998877778888888888777777776
Q ss_pred cceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccce
Q 001248 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 654 (1114)
Q Consensus 575 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~ 654 (1114)
+++++..||+|++||..+++++..+....+ ....++.++..+..++.|+.++.+.+.+..++ +.+
T Consensus 204 -------------r~~tgy~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg-KVv 268 (399)
T KOG0296|consen 204 -------------RILTGYDDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSG-KVV 268 (399)
T ss_pred -------------eEEEEecCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccc-eEE
Confidence 699999999999999999999999875543 35789999999999999999999988877666 222
Q ss_pred eeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccC
Q 001248 655 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 734 (1114)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~ 734 (1114)
....+
T Consensus 269 ~~~n~--------------------------------------------------------------------------- 273 (399)
T KOG0296|consen 269 NCNNG--------------------------------------------------------------------------- 273 (399)
T ss_pred EecCC---------------------------------------------------------------------------
Confidence 21110
Q ss_pred CCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCC
Q 001248 735 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 814 (1114)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~ 814 (1114)
++..+....
T Consensus 274 ---------------------------~~~~l~~~~-------------------------------------------- 282 (399)
T KOG0296|consen 274 ---------------------------TVPELKPSQ-------------------------------------------- 282 (399)
T ss_pred ---------------------------CCccccccc--------------------------------------------
Confidence 000000000
Q ss_pred CCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccce
Q 001248 815 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE 893 (1114)
Q Consensus 815 ~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~ 893 (1114)
......|.++.++..-.+.|+|+ ||+|.|||+...+....+. |...|+.+.|-+ ..+|++++.||.|+.||.++|+
T Consensus 283 e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~ 359 (399)
T KOG0296|consen 283 EELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQ 359 (399)
T ss_pred hhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccc
Confidence 00223345556666777889999 9999999998866655554 888899999986 5688899999999999999999
Q ss_pred EEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001248 894 VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 932 (1114)
Q Consensus 894 ~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~ 932 (1114)
++..+.||...|.+++++|+.++++|+|.|++.+||++.
T Consensus 360 l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 360 LKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 999999999999999999999999999999999999874
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=282.96 Aligned_cols=285 Identities=16% Similarity=0.287 Sum_probs=238.7
Q ss_pred EeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEE
Q 001248 459 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 538 (1114)
Q Consensus 459 ~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~w 538 (1114)
.+|+||.+.|.++.|++|++ .+++++.||.+.|||.-+....+.+.-...+|..++|+|+. +++++|+.|+...||
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr--~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg--~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSR--RIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSG--NFVACGGLDNKCSIY 124 (343)
T ss_pred EEecccccceeeeEecCCcC--eEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCC--CeEEecCcCceeEEE
Confidence 47899999999999999999 79999999999999999998888888888999999986654 799999999999999
Q ss_pred EcCCCC------CeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEe
Q 001248 539 LYDNLG------SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI 612 (1114)
Q Consensus 539 d~~~~~------~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 612 (1114)
++.+.. ....+.+|...+.+..|..|+. +++++.|.+..+||+++++.+..+
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~----------------------ilT~SGD~TCalWDie~g~~~~~f 182 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH----------------------ILTGSGDMTCALWDIETGQQTQVF 182 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcCCCc----------------------eEecCCCceEEEEEcccceEEEEe
Confidence 998652 2235667777777777777664 999999999999999999999999
Q ss_pred ccCCCCCCcCeEEEcC-CCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhcccccc
Q 001248 613 DADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGL 691 (1114)
Q Consensus 613 ~~~~~~~~v~~~~~s~-d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1114)
.+| ...|.+++++| +++.+++|+-|+..++||++.+ ...+.|.+
T Consensus 183 ~GH--~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~-~c~qtF~g-------------------------------- 227 (343)
T KOG0286|consen 183 HGH--TGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG-QCVQTFEG-------------------------------- 227 (343)
T ss_pred cCC--cccEEEEecCCCCCCeEEecccccceeeeeccCc-ceeEeecc--------------------------------
Confidence 876 45799999999 9999999999999999999888 44444422
Q ss_pred ccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeeccc
Q 001248 692 ADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS 771 (1114)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~ 771 (1114)
T Consensus 228 -------------------------------------------------------------------------------- 227 (343)
T KOG0286|consen 228 -------------------------------------------------------------------------------- 227 (343)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCc
Q 001248 772 NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK 850 (1114)
Q Consensus 772 dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~ 850 (1114)
|+..|.+++|.|+|.-+++|+ |++.++||+...+
T Consensus 228 ---------------------------------------------hesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~ 262 (343)
T KOG0286|consen 228 ---------------------------------------------HESDINSVRFFPSGDAFATGSDDATCRLYDLRADQ 262 (343)
T ss_pred ---------------------------------------------cccccceEEEccCCCeeeecCCCceeEEEeecCCc
Confidence 444455555555555555555 4555666655555
Q ss_pred cccccC--CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEE
Q 001248 851 TMATFM--PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCV 928 (1114)
Q Consensus 851 ~~~~~~--~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~i 928 (1114)
.+..+. .....|++++||. .|++|.+|..|.++.+||.-+++.+..|.||.++|+++..+|||.-|++||.|.+++|
T Consensus 263 ~~a~ys~~~~~~gitSv~FS~-SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lri 341 (343)
T KOG0286|consen 263 ELAVYSHDSIICGITSVAFSK-SGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRI 341 (343)
T ss_pred EEeeeccCcccCCceeEEEcc-cccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheee
Confidence 544443 2345799999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred Ee
Q 001248 929 WS 930 (1114)
Q Consensus 929 wd 930 (1114)
|.
T Consensus 342 W~ 343 (343)
T KOG0286|consen 342 WA 343 (343)
T ss_pred cC
Confidence 94
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-34 Score=309.28 Aligned_cols=490 Identities=17% Similarity=0.268 Sum_probs=347.0
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
....|..++|+|...+ +.++-..|.|.+||+.-+..+. .+..|.++|..++|+|++.+++
T Consensus 8 kSsRvKglsFHP~rPw-ILtslHsG~IQlWDYRM~tli~-------------------rFdeHdGpVRgv~FH~~qplFV 67 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPW-ILTSLHSGVIQLWDYRMGTLID-------------------RFDEHDGPVRGVDFHPTQPLFV 67 (1202)
T ss_pred ccccccceecCCCCCE-EEEeecCceeeeehhhhhhHHh-------------------hhhccCCccceeeecCCCCeEE
Confidence 4577899999999997 7788899999999999888776 3789999999999999999999
Q ss_pred EEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEe
Q 001248 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 516 (1114)
Q Consensus 437 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~ 516 (1114)
+|++|..|+||+.++.+++. ++.||-+-|..+.|.+.-. .++|+|+|.+|+||++++++++..++||...|.|..
T Consensus 68 SGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAq 142 (1202)
T KOG0292|consen 68 SGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQ 142 (1202)
T ss_pred ecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEeec
Confidence 99999999999999987665 8999999999999999888 799999999999999999999999999999999999
Q ss_pred eccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCC-CCeeEE------EEEecCC--CeEEeeecccceeEEEecCCCC
Q 001248 517 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP-GRWCTT------MAYSADG--TRTYQGFRKRSLGVVQFDTTKN 587 (1114)
Q Consensus 517 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-~~~v~~------~~~s~~g--~~~~~~~~~~~v~~~~~~~~~~ 587 (1114)
|+|+. .+++|+|.|.+|++||+........-.+. ...... +--.+|- +.++.| ++..++.++|+|.-.
T Consensus 143 FhptE--DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEG-HDRGVNwaAfhpTlp 219 (1202)
T KOG0292|consen 143 FHPTE--DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEG-HDRGVNWAAFHPTLP 219 (1202)
T ss_pred cCCcc--ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecc-cccccceEEecCCcc
Confidence 99877 48999999999999999754433221110 000000 1001111 133344 455889999999999
Q ss_pred EEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccC
Q 001248 588 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT 667 (1114)
Q Consensus 588 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 667 (1114)
.+++|++|..|++|.+..-+.-..-...+|...|.++-|+|...++++.++|++|++||+... ..++.++.
T Consensus 220 liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR-t~v~tfrr-------- 290 (1202)
T KOG0292|consen 220 LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR-TSVQTFRR-------- 290 (1202)
T ss_pred eEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc-cceeeeec--------
Confidence 999999999999999876654433344456778999999999999999999999999998655 33332211
Q ss_pred CCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCc
Q 001248 668 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE 747 (1114)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~ 747 (1114)
T Consensus 291 -------------------------------------------------------------------------------- 290 (1202)
T KOG0292|consen 291 -------------------------------------------------------------------------------- 290 (1202)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEe
Q 001248 748 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 827 (1114)
Q Consensus 748 ~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s 827 (1114)
..++...++..|..+.++++ .|+-+.||.+.. ..+ +.++
T Consensus 291 --endRFW~laahP~lNLfAAg-HDsGm~VFkleR-----------------------------------Erp--a~~v- 329 (1202)
T KOG0292|consen 291 --ENDRFWILAAHPELNLFAAG-HDSGMIVFKLER-----------------------------------ERP--AYAV- 329 (1202)
T ss_pred --cCCeEEEEEecCCcceeeee-cCCceEEEEEcc-----------------------------------cCc--eEEE-
Confidence 34566788889999855555 454555666531 122 2333
Q ss_pred eCCCEEEEEeCCeEEEEEcCCCccc--cccCCC---CCCeEEEEEecCCCcEEEEEe-CCCcEEEEEcccceEE----Ee
Q 001248 828 KNDSYVMSASGGKISLFNMMTFKTM--ATFMPP---PPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDEVK----SK 897 (1114)
Q Consensus 828 ~d~~~l~~~~dg~i~iwd~~~~~~~--~~~~~~---~~~i~~l~~sp~d~~~la~g~-~dg~v~iwd~~~~~~~----~~ 897 (1114)
++..|...-|..|+.+|+.+.+-. ..++.. ..+..++.++|..+..|++.. ++|...++.+.+.... ..
T Consensus 330 -~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~ 408 (1202)
T KOG0292|consen 330 -NGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKD 408 (1202)
T ss_pred -cCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchh
Confidence 344455555899999999874432 233322 367899999995555555443 3445555555432110 00
Q ss_pred ecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEE
Q 001248 898 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAI 977 (1114)
Q Consensus 898 l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~i 977 (1114)
.. ......++-.. -+++.+---.+.++.+=++.+.... .+... -....+-+...|.+|+. ....|.+
T Consensus 409 ~~-k~tG~~a~fva-rNrfavl~k~~~~v~ik~l~N~vtk---kl~~~-------~~~~~IF~ag~g~lll~-~~~~v~l 475 (1202)
T KOG0292|consen 409 VK-KGTGEGALFVA-RNRFAVLDKSNEQVVIKNLKNKVTK---KLLLP-------ESTDDIFYAGTGNLLLR-SPDSVTL 475 (1202)
T ss_pred hh-cCCCCceEEEE-ecceEEEEecCcceEEecccchhhh---cccCc-------ccccceeeccCccEEEE-cCCeEEE
Confidence 00 11122333332 2233333333666777777652211 11111 13355666667766654 4567999
Q ss_pred EEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEE
Q 001248 978 FETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1023 (1114)
Q Consensus 978 wd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd 1023 (1114)
||++..+.+.++. -..|.-+.||+|..+++.-+ -.+|.|.+
T Consensus 476 fdvQq~~~~~si~----~s~vkyvvws~dm~~vAll~-Kh~i~i~~ 516 (1202)
T KOG0292|consen 476 FDVQQKKKVGSIK----VSKVKYVVWSNDMSRVALLS-KHTITIAD 516 (1202)
T ss_pred EEeecceEEEEEe----cCceeEEEEcCccchhhhcc-cceEEEEe
Confidence 9999999988887 56899999999998877655 45666665
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-36 Score=325.10 Aligned_cols=275 Identities=18% Similarity=0.263 Sum_probs=235.2
Q ss_pred CCCCcceeEecc-CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeE--------Eeeeee----eccCCCCccc
Q 001248 345 EDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLV--------LRNFKV----WDLGACSMPL 411 (1114)
Q Consensus 345 ~~~~~~~~~~~~-h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~--------~~~~~~----~d~~~~~~~~ 411 (1114)
..+|.-+..++. ....++|..||+|++ +||.|-.|..|++|.+...+... ...... -|+.......
T Consensus 364 ~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~ 442 (707)
T KOG0263|consen 364 NSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSG 442 (707)
T ss_pred CCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCc
Confidence 344565666655 567899999999999 79999999999999998543111 000000 1112222233
Q ss_pred ccccccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCE
Q 001248 412 QAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 491 (1114)
Q Consensus 412 ~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i 491 (1114)
....+.||+++|..+.|+||.++|++++.|++|++|.+.+..++- ...||..+|+++.|+|.|- +|||+|.|++.
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~tA 517 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQTA 517 (707)
T ss_pred eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCcee
Confidence 344589999999999999999999999999999999999987665 6889999999999999998 89999999999
Q ss_pred EEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEee
Q 001248 492 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG 571 (1114)
Q Consensus 492 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~ 571 (1114)
++|......+++.+.+|-+.|.|+.|+|+. .++++||.|.++++||+.++..+..+.+|..+|.+++|||+|+
T Consensus 518 rLWs~d~~~PlRifaghlsDV~cv~FHPNs--~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr----- 590 (707)
T KOG0263|consen 518 RLWSTDHNKPLRIFAGHLSDVDCVSFHPNS--NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGR----- 590 (707)
T ss_pred eeeecccCCchhhhcccccccceEEECCcc--cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCc-----
Confidence 999999999999999999999999988755 7999999999999999999999988888888888888888776
Q ss_pred ecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 572 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
+|++|++||.|.+||+.+++.+..+.+| .+.|.++.|+.||..|++|+.|++|++||+...
T Consensus 591 ----------------~LaSg~ed~~I~iWDl~~~~~v~~l~~H--t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 591 ----------------YLASGDEDGLIKIWDLANGSLVKQLKGH--TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred ----------------eEeecccCCcEEEEEcCCCcchhhhhcc--cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 7999999999999999999999999887 568999999999999999999999999998654
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=304.40 Aligned_cols=349 Identities=19% Similarity=0.295 Sum_probs=281.9
Q ss_pred cccCCCCCCCCCcccCCCCChhhhhcccCCCCCcccc-----ccCcccc-cccccCCCCcCCCCcCCCCCCCCCcceeEe
Q 001248 281 ALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEI-----NLPVNVL-PVSFTGHSHSHSHSQAFSTPEDLPKTVTRT 354 (1114)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-----~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (1114)
.+++.+++.+++.+||.++-..+...|....+....+ .+.+++| +..|..+ ....++.+..++
T Consensus 22 ~g~rlrk~~~Rr~VDy~s~v~~~~~nR~~~~~~d~~~~~p~~~~~~~~~pp~~~~~d-----------p~~~~~tKf~h~ 90 (464)
T KOG0284|consen 22 DGKRLRKPVARRTVDYNSPVCNYRQNRRWQYDRDRALLQPDSSYIIDLVPPSLYLDD-----------PSSAFTTKFVHT 90 (464)
T ss_pred cCccccchhhhcccCCCcHHHHHHHHHhhcccccccccCCCchhhhcccChhhccCC-----------cccccccceEec
Confidence 3477788888999999999998888776544422211 5556666 3333311 112233444444
Q ss_pred c--cCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCC
Q 001248 355 L--NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1114)
Q Consensus 355 ~--~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1114)
- .-+..|..|.|+|+|++ |++|+..|.+.+|+..+ ++|+ .++..|..+|+++.||++|
T Consensus 91 s~NKvkc~V~~v~WtPeGRR-Lltgs~SGEFtLWNg~~------fnFE-------------tilQaHDs~Vr~m~ws~~g 150 (464)
T KOG0284|consen 91 SSNKVKCPVNVVRWTPEGRR-LLTGSQSGEFTLWNGTS------FNFE-------------TILQAHDSPVRTMKWSHNG 150 (464)
T ss_pred cccccccceeeEEEcCCCce-eEeecccccEEEecCce------eeHH-------------HHhhhhcccceeEEEccCC
Confidence 3 25679999999999998 89999999999999632 2222 2578999999999999999
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeeeEeeccc-cCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccC
Q 001248 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAH-VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 511 (1114)
Q Consensus 433 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h-~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 511 (1114)
.++++|+.+|.|++|+..-.... .+.+| ...|++++|||++. .|+|++.||+|+|||....+....+.||.-.
T Consensus 151 ~wmiSgD~gG~iKyWqpnmnnVk----~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwd 224 (464)
T KOG0284|consen 151 TWMISGDKGGMIKYWQPNMNNVK----IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWD 224 (464)
T ss_pred CEEEEcCCCceEEecccchhhhH----HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCC
Confidence 99999999999999998754322 34454 48999999999888 7999999999999999999999999999999
Q ss_pred EEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEE
Q 001248 512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 591 (1114)
Q Consensus 512 v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~ 591 (1114)
|.++.|+|.. .+++++|.|..|++||.+++.++.++..|...|..+.|.+++. +|++
T Consensus 225 VksvdWHP~k--gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N---------------------~Llt 281 (464)
T KOG0284|consen 225 VKSVDWHPTK--GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGN---------------------WLLT 281 (464)
T ss_pred cceeccCCcc--ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCC---------------------eeEE
Confidence 9999999887 5999999999999999999999999998988888777777664 8999
Q ss_pred EeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcC-CCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCC
Q 001248 592 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN 670 (1114)
Q Consensus 592 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 670 (1114)
++.|..++++|+++.+.+.++.+| ...++++.|+| ...+|.+|+.||.|..|.+... +.+.
T Consensus 282 ~skD~~~kv~DiR~mkEl~~~r~H--kkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~-~p~~--------------- 343 (464)
T KOG0284|consen 282 GSKDQSCKVFDIRTMKELFTYRGH--KKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLE-EPLG--------------- 343 (464)
T ss_pred ccCCceEEEEehhHhHHHHHhhcc--hhhheeeccccccccceeeccCCCceEEEecccc-cccc---------------
Confidence 999999999999988888888876 45799999999 7788999999999999987522 1110
Q ss_pred CCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCcccc
Q 001248 671 SKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLR 750 (1114)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 750 (1114)
....+|
T Consensus 344 --------------------------------------------------------------------------~i~~AH 349 (464)
T KOG0284|consen 344 --------------------------------------------------------------------------EIPPAH 349 (464)
T ss_pred --------------------------------------------------------------------------CCCccc
Confidence 011348
Q ss_pred ccceEEEEEccCcceeeecccCceEEEEeec
Q 001248 751 ATKISRLIFTNSGNAILALASNAIHLLWKWQ 781 (1114)
Q Consensus 751 ~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~ 781 (1114)
...|.+++++|-|..|++++.|.+++.|.-.
T Consensus 350 d~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 350 DGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ccceeeeeccccceeEeecCCCcceeeeccC
Confidence 8999999999999999999999999999754
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=297.41 Aligned_cols=468 Identities=18% Similarity=0.220 Sum_probs=347.1
Q ss_pred ccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEe
Q 001248 416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495 (1114)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd 495 (1114)
+..|+..|.++.|+|...+++++-.+|.|.|||.++...++ .+.-..-+|.+..|-..-+ .+++|++|..|+||+
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN 83 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence 55688999999999999999999999999999999988776 5666778999999998877 799999999999999
Q ss_pred CCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCC-CCeeeecCCCCeeEEEEEecCCCeEEeeecc
Q 001248 496 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1114)
Q Consensus 496 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~ 574 (1114)
..+++.++.|..|.+.|.+++.+|.. .++++++.|-+|++||++.. .+.+++.+|.+.|.+++|.|...
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~-------- 153 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDP-------- 153 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCc--------
Confidence 99999999999999999999998876 79999999999999999976 45668899999999999888765
Q ss_pred cceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcC--CCCEEEEEeCCCcEEEEEccCCcc
Q 001248 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK--DGCLLAVSTNDNGIKILATSDGIR 652 (1114)
Q Consensus 575 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~~~~~dg~i~iwd~~~~~~ 652 (1114)
+.+++++-|++|++|.+.+..+..++.+| ...|+|+.+-+ |..+|++|+.|.++++||..+. .
T Consensus 154 ------------ntFaS~sLDrTVKVWslgs~~~nfTl~gH--ekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-~ 218 (794)
T KOG0276|consen 154 ------------NTFASASLDRTVKVWSLGSPHPNFTLEGH--EKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK-S 218 (794)
T ss_pred ------------cceeeeeccccEEEEEcCCCCCceeeecc--ccCcceEEeccCCCcceEEecCCCceEEEeecchH-H
Confidence 57999999999999999999999999866 55899999988 4469999999999999999887 6
Q ss_pred ceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEec
Q 001248 653 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT 732 (1114)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~ 732 (1114)
++++++|
T Consensus 219 CV~TLeG------------------------------------------------------------------------- 225 (794)
T KOG0276|consen 219 CVQTLEG------------------------------------------------------------------------- 225 (794)
T ss_pred HHHHhhc-------------------------------------------------------------------------
Confidence 6766654
Q ss_pred cCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccC
Q 001248 733 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 812 (1114)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~ 812 (1114)
|...|..+.|.|.-..++++++||+++||.-.+- ++....-
T Consensus 226 -----------------Ht~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty----------------------~lE~tLn 266 (794)
T KOG0276|consen 226 -----------------HTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY----------------------KLEKTLN 266 (794)
T ss_pred -----------------ccccceEEEecCCCcEEEEecCCccEEEecCcce----------------------ehhhhhh
Confidence 5667888999999999999999999999974321 1111000
Q ss_pred CCCCCCCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCC-CcEEEE----
Q 001248 813 TDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD-SSIQIY---- 887 (1114)
Q Consensus 813 ~~~~~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~d-g~v~iw---- 887 (1114)
..-.++.|++..+.+..+++|.|....+..+....+...+ ++ .|+++-+.... ..+.+-
T Consensus 267 ---~gleRvW~I~~~k~~~~i~vG~Deg~i~v~lgreeP~vsM------------d~-~gKIiwa~~~ei~~~~~ks~~~ 330 (794)
T KOG0276|consen 267 ---YGLERVWCIAAHKGDGKIAVGFDEGSVTVKLGREEPAVSM------------DS-NGKIIWAVHSEIQAVNLKSVGA 330 (794)
T ss_pred ---cCCceEEEEeecCCCCeEEEeccCCcEEEEccCCCCceee------------cC-CccEEEEcCceeeeeeceeccC
Confidence 1356789999989999999999766555565544433333 23 33333222110 011111
Q ss_pred --EcccceEEE----eecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEc
Q 001248 888 --NVRVDEVKS----KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH 961 (1114)
Q Consensus 888 --d~~~~~~~~----~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fs 961 (1114)
++..|+.+. .+-.-.-.-..++-||+|+++++|+ ||.-.||..-.. +.. . .+.-....|+
T Consensus 331 ~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~Vcg-dGEyiIyTala~-----RnK--~------fG~~~eFvw~ 396 (794)
T KOG0276|consen 331 QKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCG-DGEYIIYTALAL-----RNK--A------FGSGLEFVWA 396 (794)
T ss_pred cccccCCccccchhhhccccccchHHhccCCCCcEEEEec-CccEEEEEeeeh-----hhc--c------cccceeEEEc
Confidence 333343221 1111111123578899998777665 888888864321 111 1 1345778999
Q ss_pred cCCcEEEE-EeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccC
Q 001248 962 QDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLP 1040 (1114)
Q Consensus 962 pdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~ 1040 (1114)
+|....++ -+++.|+++ ++.+..+++....+... --.|.+|. ...++.+++||.++++++.++.
T Consensus 397 ~dsne~avRes~~~vki~--knfke~ksi~~~~~~e~------i~gg~Llg-~~ss~~~~fydW~~~~lVrrI~------ 461 (794)
T KOG0276|consen 397 ADSNEFAVRESNGNVKIF--KNFKEHKSIRPDMSAEG------IFGGPLLG-VRSSDFLCFYDWESGELVRRIE------ 461 (794)
T ss_pred CCCCeEEEEecCCceEEE--ecceeccccccccceee------ecCCceEE-EEeCCeEEEEEcccceEEEEEe------
Confidence 99777777 678999998 67777777664332111 12344444 5557889999999999999998
Q ss_pred CCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccC
Q 001248 1041 AGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1041 ~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~ 1079 (1114)
+.+-.+.|+- +|.+++.++ |...++..+..
T Consensus 462 -------v~~k~v~w~d-~g~lVai~~-d~Sfyil~~n~ 491 (794)
T KOG0276|consen 462 -------VTSKHVYWSD-NGELVAIAG-DDSFYILKFNA 491 (794)
T ss_pred -------eccceeEEec-CCCEEEEEe-cCceeEEEecH
Confidence 5555788885 566666555 55566766654
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=290.07 Aligned_cols=271 Identities=17% Similarity=0.272 Sum_probs=236.8
Q ss_pred eeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC
Q 001248 351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1114)
Q Consensus 351 ~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1114)
..++.+|...|+.+-|+|+-. +.++++.|++|++||..+|+... .+.||++.|..++|+.
T Consensus 101 ~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~-------------------~LrGHt~sv~di~~~a 160 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELER-------------------SLRGHTDSVFDISFDA 160 (406)
T ss_pred hhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhh-------------------hhhccccceeEEEEec
Confidence 345666999999999999988 79999999999999999998865 5899999999999999
Q ss_pred CCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeecccc
Q 001248 431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 510 (1114)
Q Consensus 431 dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 510 (1114)
.|++||+++.|-.+++||..+. ..+...+.+|...|.++.|-|.|. ++++++.|.+|+.|++.+|.+++++.+|..
T Consensus 161 ~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~h~e 236 (406)
T KOG0295|consen 161 SGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPGHSE 236 (406)
T ss_pred CccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccCchH
Confidence 9999999999999999999863 233337889999999999999998 899999999999999999999999999999
Q ss_pred CEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEec-CCCCEE
Q 001248 511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD-TTKNRF 589 (1114)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~-~~~~~l 589 (1114)
.|..+. +..||.++++++.|.++++|-+.+..+...+..|...|.+++|.|...+--. ....-+ ..+.++
T Consensus 237 wvr~v~--v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i-------~~at~~~~~~~~l 307 (406)
T KOG0295|consen 237 WVRMVR--VNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSI-------SEATGSTNGGQVL 307 (406)
T ss_pred hEEEEE--ecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcch-------hhccCCCCCccEE
Confidence 999998 4678899999999999999999999999999999999999999887641100 000000 134689
Q ss_pred EEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeec
Q 001248 590 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657 (1114)
Q Consensus 590 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 657 (1114)
.+++.|++|++||+.++.++.++.+|. ..|..++|+|.|+||+++.+|+++++||+.+. ++.+.+
T Consensus 308 ~s~SrDktIk~wdv~tg~cL~tL~ghd--nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~-~cmk~~ 372 (406)
T KOG0295|consen 308 GSGSRDKTIKIWDVSTGMCLFTLVGHD--NWVRGVAFSPGGKYILSCADDKTLRVWDLKNL-QCMKTL 372 (406)
T ss_pred EeecccceEEEEeccCCeEEEEEeccc--ceeeeeEEcCCCeEEEEEecCCcEEEEEeccc-eeeecc
Confidence 999999999999999999999999875 48999999999999999999999999999887 555544
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=267.96 Aligned_cols=230 Identities=20% Similarity=0.303 Sum_probs=188.9
Q ss_pred eEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccC
Q 001248 372 TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHG 451 (1114)
Q Consensus 372 ~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~ 451 (1114)
-||++++.|.+|++|...+|.+... +....+.|+.+.+.||++.||+++.. .|++||+.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S 70 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNS 70 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccCC-eeEEEEccC
Confidence 3899999999999999999998863 44456789999999999999999765 599999999
Q ss_pred CceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEec
Q 001248 452 GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL 531 (1114)
Q Consensus 452 ~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~ 531 (1114)
+... +..++.+|...|.++.|-.||+ .++|||+||+++|||++...+.+.++ |..+|+++..++.. .-|++|..
T Consensus 71 ~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQ--teLis~dq 144 (311)
T KOG0315|consen 71 NNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQ--TELISGDQ 144 (311)
T ss_pred CCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCc--ceEEeecC
Confidence 8753 5668999999999999999999 79999999999999999977766666 77999999987655 57999999
Q ss_pred CCeEEEEEcCCCCCeeeecC-CCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcc---
Q 001248 532 DGKIKAWLYDNLGSRVDYEA-PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ--- 607 (1114)
Q Consensus 532 d~~i~~wd~~~~~~~~~~~~-~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--- 607 (1114)
+|.|++||+....+...+.. ....+.++.+.||| .+++++...|..++|++-++.
T Consensus 145 sg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dg---------------------sml~a~nnkG~cyvW~l~~~~~~s 203 (311)
T KOG0315|consen 145 SGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDG---------------------SMLAAANNKGNCYVWRLLNHQTAS 203 (311)
T ss_pred CCcEEEEEccCCccccccCCCCCcceeeEEEcCCC---------------------cEEEEecCCccEEEEEccCCCccc
Confidence 99999999987655443322 23345555555555 578999999999999986643
Q ss_pred ---eEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 608 ---LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 608 ---~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
++..+..| ...+..+.+|||+++|++++.|.+++||+..+.
T Consensus 204 ~l~P~~k~~ah--~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 204 ELEPVHKFQAH--NGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred cceEhhheecc--cceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence 33444444 447889999999999999999999999987543
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-34 Score=265.60 Aligned_cols=281 Identities=14% Similarity=0.220 Sum_probs=235.4
Q ss_pred EEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCcc-ceeecccccccccc
Q 001248 588 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR-LLRTFENLAYDASR 666 (1114)
Q Consensus 588 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~ 666 (1114)
+|++++.|.+||+|...+|.+..++.... ..|+.+.+.||++.|++++. ..||+||++++.. .+..+
T Consensus 12 iLvsA~YDhTIRfWqa~tG~C~rTiqh~d--sqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~--------- 79 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTGICSRTIQHPD--SQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATF--------- 79 (311)
T ss_pred EEEeccCcceeeeeehhcCeEEEEEecCc--cceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEE---------
Confidence 58899999999999999999999998664 47999999999999999886 6899999887621 01000
Q ss_pred CCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccC
Q 001248 667 TSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLP 746 (1114)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~ 746 (1114)
T Consensus 80 -------------------------------------------------------------------------------- 79 (311)
T KOG0315|consen 80 -------------------------------------------------------------------------------- 79 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEE
Q 001248 747 ENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL 826 (1114)
Q Consensus 747 ~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~ 826 (1114)
. +|...|+++.|
T Consensus 80 ------------------------------------------------------------------e--~h~kNVtaVgF 91 (311)
T KOG0315|consen 80 ------------------------------------------------------------------E--GHTKNVTAVGF 91 (311)
T ss_pred ------------------------------------------------------------------e--ccCCceEEEEE
Confidence 0 16777888999
Q ss_pred eeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecc-cccC
Q 001248 827 SKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG-HSKR 904 (1114)
Q Consensus 827 s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~-h~~~ 904 (1114)
..||+++++|+ ||+++|||+....+.+.++ |..+|+++..+| +...|++|..+|.|++||+....+...+.. ....
T Consensus 92 ~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~ 169 (311)
T KOG0315|consen 92 QCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTS 169 (311)
T ss_pred eecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecC-CcceEEeecCCCcEEEEEccCCccccccCCCCCcc
Confidence 99999999999 8999999999877777776 679999999999 888899999999999999998776665543 4467
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccc-ccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCC
Q 001248 905 ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK-NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTK 982 (1114)
Q Consensus 905 V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~ 982 (1114)
|.++...|||.+|+.+..-|+..+|++-+..... ..++..++.|. +.+..+.+|||+++||+ +.|.+++||++.+
T Consensus 170 i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~---~~il~C~lSPd~k~lat~ssdktv~iwn~~~ 246 (311)
T KOG0315|consen 170 IQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHN---GHILRCLLSPDVKYLATCSSDKTVKIWNTDD 246 (311)
T ss_pred eeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheeccc---ceEEEEEECCCCcEEEeecCCceEEEEecCC
Confidence 9999999999999999999999999997733211 22233333443 57899999999999999 6999999999998
Q ss_pred CceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeC
Q 001248 983 LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 983 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
. ...+....+|.+.+...+||.||+||++|+.|+.+++|+++.++.+....
T Consensus 247 ~-~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~ 297 (311)
T KOG0315|consen 247 F-FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQ 297 (311)
T ss_pred c-eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecC
Confidence 8 44555566999999999999999999999999999999999999998876
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=287.06 Aligned_cols=279 Identities=15% Similarity=0.259 Sum_probs=242.2
Q ss_pred cccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeC
Q 001248 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d 829 (1114)
.+..|++++|+.+|..|+++..||.+++|+... .++.. + ..|.++|.++.|+..
T Consensus 234 ~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G-----------------------~l~~t-l--~~HkgPI~slKWnk~ 287 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGTLLATGSEDGEARIWNKDG-----------------------NLIST-L--GQHKGPIFSLKWNKK 287 (524)
T ss_pred ccCCcceEEecCCCCeEEEeecCcEEEEEecCc-----------------------hhhhh-h--hccCCceEEEEEcCC
Confidence 457899999999999999999999999998642 22211 1 129999999999999
Q ss_pred CCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEE
Q 001248 830 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL 908 (1114)
Q Consensus 830 ~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l 908 (1114)
|.||++++ |+++.+||..++...+.+.-|..+-..+.|- +..-+|+.+.||.|+|+.+....++.++.||.++|.+|
T Consensus 288 G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~al 365 (524)
T KOG0273|consen 288 GTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ--SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNAL 365 (524)
T ss_pred CCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEe--cCceEeecCCCceEEEEEecCCCcceeeecccCceEEE
Confidence 99999999 9999999999999999888888876778886 45678999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCC---------cEEEE-EeCCeEEEE
Q 001248 909 AFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ---------IHFLV-VHETQLAIF 978 (1114)
Q Consensus 909 ~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg---------~~l~~-~~d~~i~iw 978 (1114)
.|.|.|.+|+|+|.|+|++||++... .+...+..|.. .|..+.|+|+| ..+++ +.|++|++|
T Consensus 366 k~n~tg~LLaS~SdD~TlkiWs~~~~-----~~~~~l~~Hsk---ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lw 437 (524)
T KOG0273|consen 366 KWNPTGSLLASCSDDGTLKIWSMGQS-----NSVHDLQAHSK---EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLW 437 (524)
T ss_pred EECCCCceEEEecCCCeeEeeecCCC-----cchhhhhhhcc---ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEE
Confidence 99999999999999999999998763 34455556654 78899999964 45555 799999999
Q ss_pred EcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCC
Q 001248 979 ETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ 1058 (1114)
Q Consensus 979 d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 1058 (1114)
|+..+.++..+. .|..+|++++|||+|+|||+|+.||.|.+|++.++++..... + ...|. .++|+.
T Consensus 438 dv~~gv~i~~f~--kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~-------~--~~~If--el~Wn~- 503 (524)
T KOG0273|consen 438 DVESGVPIHTLM--KHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ-------G--TGGIF--ELCWNA- 503 (524)
T ss_pred EccCCceeEeec--cCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeec-------C--CCeEE--EEEEcC-
Confidence 999999999987 899999999999999999999999999999999999998876 2 22255 899998
Q ss_pred CCCeEEEEeCCCcEEEEecc
Q 001248 1059 EPNEFALGLSDGGVHVFEPL 1078 (1114)
Q Consensus 1059 d~~~l~s~~~Dg~v~vW~i~ 1078 (1114)
+|+.|..+-.||.++|-|+.
T Consensus 504 ~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 504 AGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CCCEEEEEecCCCceEEEec
Confidence 57899999999999998874
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=274.43 Aligned_cols=330 Identities=15% Similarity=0.192 Sum_probs=261.2
Q ss_pred EeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCC
Q 001248 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1114)
....|++.|.+++.+|+.+ ++|||+.|..-.||+..+|+... .+.+|++.|+++.||.||
T Consensus 59 tF~~H~~svFavsl~P~~~-l~aTGGgDD~AflW~~~~ge~~~-------------------eltgHKDSVt~~~Fshdg 118 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNN-LVATGGGDDLAFLWDISTGEFAG-------------------ELTGHKDSVTCCSFSHDG 118 (399)
T ss_pred ehhhcCCceEEEEeCCCCc-eEEecCCCceEEEEEccCCccee-------------------EecCCCCceEEEEEccCc
Confidence 3444999999999999777 69999999999999999998665 489999999999999999
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCE
Q 001248 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 512 (1114)
Q Consensus 433 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 512 (1114)
.+||+|+.+|.|+||+..++.... ++.+....+.-+.|.|-+. +|+.|+.||.+.+|.+.++...+.+.||..++
T Consensus 119 tlLATGdmsG~v~v~~~stg~~~~---~~~~e~~dieWl~WHp~a~--illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~c 193 (399)
T KOG0296|consen 119 TLLATGDMSGKVLVFKVSTGGEQW---KLDQEVEDIEWLKWHPRAH--ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPC 193 (399)
T ss_pred eEEEecCCCccEEEEEcccCceEE---EeecccCceEEEEeccccc--EEEeecCCCcEEEEECCCcceeeEecCCCCCc
Confidence 999999999999999999998666 4545667788999999888 89999999999999999988889999999999
Q ss_pred EEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEE
Q 001248 513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 592 (1114)
Q Consensus 513 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~ 592 (1114)
++=.|. |+|+.++++..||+|++|+..++.+...+....+ ....++.++..+..++.|
T Consensus 194 t~G~f~--pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~--------------------~~~~~~~~~~~~~~~~~g 251 (399)
T KOG0296|consen 194 TCGEFI--PDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEG--------------------LELPCISLNLAGSTLTKG 251 (399)
T ss_pred cccccc--CCCceEEEEecCceEEEEecCCCceeEEeccccc--------------------CcCCccccccccceeEec
Confidence 998875 4579999999999999999999877765543221 133344555555578888
Q ss_pred eCCCeEEEEECCCcceEEEeccC------CCCCCcCeEEE---cCCCCEEEEEeCCCcEEEEEccCCccceeeccccccc
Q 001248 593 GDDFSIKFWDMDSVQLLTSIDAD------GGLPASPRIRF---NKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYD 663 (1114)
Q Consensus 593 ~~dg~i~iwd~~~~~~~~~~~~~------~~~~~v~~~~~---s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 663 (1114)
+.++.+++-+..+|+.+...... .+...+.++.+ +..=.+.|+|+-||+|.|||....
T Consensus 252 ~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~------------- 318 (399)
T KOG0296|consen 252 NSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS------------- 318 (399)
T ss_pred cCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc-------------
Confidence 89999999998888877766521 01112222222 223344455555555555554322
Q ss_pred cccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCcccccc
Q 001248 664 ASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSL 743 (1114)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~ 743 (1114)
T Consensus 319 -------------------------------------------------------------------------------- 318 (399)
T KOG0296|consen 319 -------------------------------------------------------------------------------- 318 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccE
Q 001248 744 RLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC 823 (1114)
Q Consensus 744 ~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~ 823 (1114)
. +.. . -.|...|..
T Consensus 319 ----------------------------------------~----------------------~R~--~--c~he~~V~~ 332 (399)
T KOG0296|consen 319 ----------------------------------------T----------------------LRH--I--CEHEDGVTK 332 (399)
T ss_pred ----------------------------------------h----------------------hhe--e--ccCCCceEE
Confidence 0 000 0 016777888
Q ss_pred EEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcc
Q 001248 824 FALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 890 (1114)
Q Consensus 824 v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~ 890 (1114)
+.|-+ ..+|++++ +|.|+.||.++|++..++.+|...|.+++++| +.+++++++.|++.+||++.
T Consensus 333 l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 333 LKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 88877 56777777 99999999999999999999999999999999 99999999999999999864
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-34 Score=280.81 Aligned_cols=301 Identities=21% Similarity=0.326 Sum_probs=255.8
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw 494 (1114)
.+.+|..+|+.+-|.|+-..+++++.|++|++||..+|+..+ .++||...|.+|+|+..|+ ++++++.|-.+++|
T Consensus 103 ~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~---~LrGHt~sv~di~~~a~Gk--~l~tcSsDl~~~LW 177 (406)
T KOG0295|consen 103 KLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER---SLRGHTDSVFDISFDASGK--YLATCSSDLSAKLW 177 (406)
T ss_pred hhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh---hhhccccceeEEEEecCcc--EEEecCCccchhhe
Confidence 377899999999999999999999999999999999999765 7999999999999999999 89999999999999
Q ss_pred eCCC-CcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeec
Q 001248 495 DATN-GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR 573 (1114)
Q Consensus 495 d~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~ 573 (1114)
|.++ -++++.+.+|...|.+++|.|.+ .+
T Consensus 178 d~~~~~~c~ks~~gh~h~vS~V~f~P~g--d~------------------------------------------------ 207 (406)
T KOG0295|consen 178 DFDTFFRCIKSLIGHEHGVSSVFFLPLG--DH------------------------------------------------ 207 (406)
T ss_pred eHHHHHHHHHHhcCcccceeeEEEEecC--Ce------------------------------------------------
Confidence 9887 67788889999999998876543 23
Q ss_pred ccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccc
Q 001248 574 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL 653 (1114)
Q Consensus 574 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~ 653 (1114)
+++++.|.+|+.|++.++.++.++.+|.. .|..+..+.||.++++++.|.++++|-+.++ ++
T Consensus 208 ---------------ilS~srD~tik~We~~tg~cv~t~~~h~e--wvr~v~v~~DGti~As~s~dqtl~vW~~~t~-~~ 269 (406)
T KOG0295|consen 208 ---------------ILSCSRDNTIKAWECDTGYCVKTFPGHSE--WVRMVRVNQDGTIIASCSNDQTLRVWVVATK-QC 269 (406)
T ss_pred ---------------eeecccccceeEEecccceeEEeccCchH--hEEEEEecCCeeEEEecCCCceEEEEEeccc-hh
Confidence 55566666677777778888888887754 7889999999999999999999999988776 33
Q ss_pred eeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEecc
Q 001248 654 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 733 (1114)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~ 733 (1114)
...++
T Consensus 270 k~~lR--------------------------------------------------------------------------- 274 (406)
T KOG0295|consen 270 KAELR--------------------------------------------------------------------------- 274 (406)
T ss_pred hhhhh---------------------------------------------------------------------------
Confidence 33332
Q ss_pred CCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCC
Q 001248 734 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 813 (1114)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~ 813 (1114)
.|...|.+++|.|...+ ....+ ..
T Consensus 275 ---------------~hEh~vEci~wap~~~~--~~i~~---------------------------------------at 298 (406)
T KOG0295|consen 275 ---------------EHEHPVECIAWAPESSY--PSISE---------------------------------------AT 298 (406)
T ss_pred ---------------ccccceEEEEecccccC--cchhh---------------------------------------cc
Confidence 26667778888776431 00000 00
Q ss_pred CCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc
Q 001248 814 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 892 (1114)
Q Consensus 814 ~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~ 892 (1114)
+ .. ..++++.+++ |++|++||+.++.++.++.+|...|..++|+| +|++|+++.+|+++++||++++
T Consensus 299 ~--~~---------~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p-~Gkyi~ScaDDktlrvwdl~~~ 366 (406)
T KOG0295|consen 299 G--ST---------NGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSP-GGKYILSCADDKTLRVWDLKNL 366 (406)
T ss_pred C--CC---------CCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcC-CCeEEEEEecCCcEEEEEeccc
Confidence 0 00 1567889999 99999999999999999999999999999999 9999999999999999999999
Q ss_pred eEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001248 893 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 931 (1114)
Q Consensus 893 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~ 931 (1114)
++...+..|..-|+++.|..+..+++||+-|.++++|.-
T Consensus 367 ~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 367 QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 999999999999999999999999999999999999964
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=282.74 Aligned_cols=293 Identities=18% Similarity=0.274 Sum_probs=240.2
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw 494 (1114)
++..|++.|+.+.||++|+|||+++.|.+..||++.....++...++.+|..+|..+.||||++ ++++|+.|..+++|
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSLW 296 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheeec
Confidence 6889999999999999999999999999999999987776777778999999999999999999 79999999999999
Q ss_pred eCCCCcceeEee-ccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeec
Q 001248 495 DATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR 573 (1114)
Q Consensus 495 d~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~ 573 (1114)
|+.+|.+...+. +|...+.+++|.| ||..+++|+.|+++..||++.... ....+.+
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W~p--Dg~~~V~Gs~dr~i~~wdlDgn~~---------------------~~W~gvr 353 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAWCP--DGFRFVTGSPDRTIIMWDLDGNIL---------------------GNWEGVR 353 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEEcc--CCceeEecCCCCcEEEecCCcchh---------------------hcccccc
Confidence 999999887774 4568899999865 557899999999999999875321 1112222
Q ss_pred ccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccc
Q 001248 574 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL 653 (1114)
Q Consensus 574 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~ 653 (1114)
...+..+++.+||.++++.+.|..|++++..+......+..+ .+|+++++|.|++++++.-.+..+++||+... ..
T Consensus 354 ~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~---~~its~~iS~d~k~~LvnL~~qei~LWDl~e~-~l 429 (519)
T KOG0293|consen 354 DPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEE---QPITSFSISKDGKLALVNLQDQEIHLWDLEEN-KL 429 (519)
T ss_pred cceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccccc---CceeEEEEcCCCcEEEEEcccCeeEEeecchh-hH
Confidence 234455555556668999999999999999887666555433 36999999999999999999999999999855 55
Q ss_pred eeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEecc
Q 001248 654 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 733 (1114)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~ 733 (1114)
++.+.||...
T Consensus 430 v~kY~Ghkq~---------------------------------------------------------------------- 439 (519)
T KOG0293|consen 430 VRKYFGHKQG---------------------------------------------------------------------- 439 (519)
T ss_pred HHHhhccccc----------------------------------------------------------------------
Confidence 5555544321
Q ss_pred CCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCC
Q 001248 734 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 813 (1114)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~ 813 (1114)
.+++-.
T Consensus 440 ------------------------------~fiIrS-------------------------------------------- 445 (519)
T KOG0293|consen 440 ------------------------------HFIIRS-------------------------------------------- 445 (519)
T ss_pred ------------------------------ceEEEe--------------------------------------------
Confidence 111111
Q ss_pred CCCCCCCccEEEEe-eCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc
Q 001248 814 DSNPEEAVPCFALS-KNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 891 (1114)
Q Consensus 814 ~~~~~~~v~~v~~s-~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~ 891 (1114)
||- .|.+++++|+ |++|+||+..+++++.++.||...|.|++|+|.+..++|+|++||+|+||....
T Consensus 446 -----------CFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 446 -----------CFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred -----------ccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 111 2557899999 999999999999999999999999999999999999999999999999998653
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-29 Score=270.73 Aligned_cols=547 Identities=14% Similarity=0.150 Sum_probs=379.0
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCC-CCeeEEEEcCCCCeE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG-VSVNRVIWSPDGSLF 435 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~l 435 (1114)
...+|+|++||.+.+. ||.+-.+|.|.||++..+-... .++.++. ..|.+++|+ +|..|
T Consensus 24 ~Ps~I~slA~s~kS~~-lAvsRt~g~IEiwN~~~~w~~~------------------~vi~g~~drsIE~L~W~-e~~RL 83 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQ-LAVSRTDGNIEIWNLSNNWFLE------------------PVIHGPEDRSIESLAWA-EGGRL 83 (691)
T ss_pred eccceEEEEEeccCCc-eeeeccCCcEEEEccCCCceee------------------EEEecCCCCceeeEEEc-cCCeE
Confidence 5678999999999996 9999999999999998753332 2445554 689999999 56677
Q ss_pred EEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCccee--EeeccccCEE
Q 001248 436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY--IFEGHEAPVY 513 (1114)
Q Consensus 436 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~h~~~v~ 513 (1114)
.+.+.+|+|.-||+.+++... .+....+.|++++.+|.+. .++.|++||.+...+...++..+ .|....+.|.
T Consensus 84 FS~g~sg~i~EwDl~~lk~~~---~~d~~gg~IWsiai~p~~~--~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvL 158 (691)
T KOG2048|consen 84 FSSGLSGSITEWDLHTLKQKY---NIDSNGGAIWSIAINPENT--ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVL 158 (691)
T ss_pred EeecCCceEEEEecccCceeE---EecCCCcceeEEEeCCccc--eEEeecCCceEEEEecCCceEEEEeecccccceEE
Confidence 888899999999999988665 6777788999999999998 78999999988888887777654 4555678999
Q ss_pred EEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecC--------CCCeeEEEEEecCCCeEEeeecccceeEEEecCC
Q 001248 514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA--------PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 585 (1114)
Q Consensus 514 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--------~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~ 585 (1114)
++.|+++ +..+++|+.||.|++||...+........ ...-|.++.+-.++.
T Consensus 159 slsw~~~--~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t------------------- 217 (691)
T KOG2048|consen 159 SLSWNPT--GTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST------------------- 217 (691)
T ss_pred EEEecCC--ccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc-------------------
Confidence 9998654 46799999999999999998776652111 122455555555554
Q ss_pred CCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccc
Q 001248 586 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS 665 (1114)
Q Consensus 586 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 665 (1114)
+++|..-|+|.+||...+.+++.+..+. ..|.+++..+++..+++++-|+.|.-|...++...
T Consensus 218 ---I~sgDS~G~V~FWd~~~gTLiqS~~~h~--adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~------------ 280 (691)
T KOG2048|consen 218 ---IASGDSAGTVTFWDSIFGTLIQSHSCHD--ADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE------------ 280 (691)
T ss_pred ---EEEecCCceEEEEcccCcchhhhhhhhh--cceeEEEEcCCCCeEEEccCCCceEEEEecCCccc------------
Confidence 9999999999999999999999988774 47999999999999999999999988876555221
Q ss_pred cCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCcccccccc
Q 001248 666 RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL 745 (1114)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~ 745 (1114)
|-...
T Consensus 281 ---------------------------------------------------------------wv~~~------------ 285 (691)
T KOG2048|consen 281 ---------------------------------------------------------------WVINS------------ 285 (691)
T ss_pred ---------------------------------------------------------------eeeec------------
Confidence 11000
Q ss_pred CccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccE-E
Q 001248 746 PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC-F 824 (1114)
Q Consensus 746 ~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~-v 824 (1114)
+...|...+.+++..++ .+++++.|..+.+-....... .+.. +. ...+-.+ +
T Consensus 286 ~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~--------------~~h~----~~-------~~~p~~~~v 338 (691)
T KOG2048|consen 286 RRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKN--------------MDHR----QK-------NLFPASDRV 338 (691)
T ss_pred cccCCcccceeeeeecc--eEEecceeeEEEEccccccCc--------------hhhh----cc-------cccccccee
Confidence 01237788899998887 799999999888754332100 0000 00 0001111 2
Q ss_pred EEeeCCCEEEEEeCCeEEEEEcCCCccc---------cccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEE
Q 001248 825 ALSKNDSYVMSASGGKISLFNMMTFKTM---------ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 895 (1114)
Q Consensus 825 ~~s~d~~~l~~~~dg~i~iwd~~~~~~~---------~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~ 895 (1114)
...+..++++.-.+..+.+|.+.+.... +........|.+.+.|| +|++||.+.- ..++||.+.....+
T Consensus 339 ~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSP-dg~~Ia~st~-~~~~iy~L~~~~~v 416 (691)
T KOG2048|consen 339 SVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISP-DGNLIAISTV-SRTKIYRLQPDPNV 416 (691)
T ss_pred ecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCC-CCCEEEEeec-cceEEEEeccCcce
Confidence 3334444444444788888888665211 11223445799999999 9999998863 46888887652211
Q ss_pred --E---eecccccCeeEEEEcCCCCEEEEEe-CCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE
Q 001248 896 --S---KLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 969 (1114)
Q Consensus 896 --~---~l~~h~~~V~~l~~s~d~~~l~s~s-~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~ 969 (1114)
. ....-.-.+..+.|+-|+..++.++ .+..+.++++++........+... .....|..++.|+||+|+|+
T Consensus 417 k~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~----~~~~~I~~l~~SsdG~yiaa 492 (691)
T KOG2048|consen 417 KVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ----AKCPSISRLVVSSDGNYIAA 492 (691)
T ss_pred eEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccc----cCCCcceeEEEcCCCCEEEE
Confidence 1 1222334577889999998888888 677888888887543322211111 22358999999999999999
Q ss_pred -EeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECC-CCCEEEEEEcCCeEEEEEcCCCeeeEEeC-CCcccCCCCCCC
Q 001248 970 -VHETQLAIFETTKLECVKQWVPRESSAPITHATFSC-DSQLVYACFLDATVCVFSAANLKLRCRIN-PSAYLPAGVSSS 1046 (1114)
Q Consensus 970 -~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~-~~~~~~~~~~~~ 1046 (1114)
+..+.|.+|++++++...... .-...|+.++|+| +-..|+.+..|+.|+=||++..++-.-.. ....+|.....-
T Consensus 493 ~~t~g~I~v~nl~~~~~~~l~~--rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ws~~nt~nlpk~~~~l 570 (691)
T KOG2048|consen 493 ISTRGQIFVYNLETLESHLLKV--RLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTRWSKNNTRNLPKEPKTL 570 (691)
T ss_pred EeccceEEEEEcccceeecchh--ccCcceeeeeccccccCcEEEEecCCeEEEEecchhhhhhhhhccccccccChhhc
Confidence 789999999999887654432 1247899999995 55678889999999999994433211000 001122111111
Q ss_pred CccceEEEecCCCCCeEEEEeCCCcEEEEec
Q 001248 1047 NVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1077 (1114)
Q Consensus 1047 ~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i 1077 (1114)
.-....+.|+|.+...+++ -+.+.+.+.|.
T Consensus 571 ~~~~~gisfd~~n~s~~~~-~~a~w~~~id~ 600 (691)
T KOG2048|consen 571 IPGIPGISFDPKNSSRFIV-YDAHWSCLIDF 600 (691)
T ss_pred CCCCceEEeCCCCccEEEE-EcCcEEEEEec
Confidence 1122367788755444443 33455555554
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-30 Score=274.81 Aligned_cols=502 Identities=13% Similarity=0.166 Sum_probs=346.5
Q ss_pred CCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccc-cCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCC
Q 001248 421 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAH-VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG 499 (1114)
Q Consensus 421 ~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h-~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 499 (1114)
.+|.+||||.+.+.||.+=.||.|.||++..+-.... .+.++ +..|.+++|++.++ |++.+.+|.|.-||+.++
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~--vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~~l 100 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEP--VIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLHTL 100 (691)
T ss_pred cceEEEEEeccCCceeeeccCCcEEEEccCCCceeeE--EEecCCCCceeeEEEccCCe---EEeecCCceEEEEecccC
Confidence 4899999999999999999999999999998644333 45554 45899999996665 899999999999999999
Q ss_pred cceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeee--ecCCCCeeEEEEEecCCCeEEeeecccce
Q 001248 500 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD--YEAPGRWCTTMAYSADGTRTYQGFRKRSL 577 (1114)
Q Consensus 500 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~--~~~~~~~v~~~~~s~~g~~~~~~~~~~~v 577 (1114)
+.+..+....+.|++++.++.. ..++.|+.||.+...+......... +..... .+
T Consensus 101 k~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~s---------------------Rv 157 (691)
T KOG2048|consen 101 KQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKS---------------------RV 157 (691)
T ss_pred ceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccc---------------------eE
Confidence 9999999999999999987765 6899999999777776655433321 111223 44
Q ss_pred eEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEec-----cCC-CCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCc
Q 001248 578 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID-----ADG-GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI 651 (1114)
Q Consensus 578 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~-~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~ 651 (1114)
-++.|+|++..+++|+.||.|++||..++..+.... ... ...-|.++.|-.++ .|++|...|+|.+||...+
T Consensus 158 Lslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~g- 235 (691)
T KOG2048|consen 158 LSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFG- 235 (691)
T ss_pred EEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCc-
Confidence 455555555679999999999999999988776322 111 22234556666444 6788888888999987766
Q ss_pred cceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEe
Q 001248 652 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL 731 (1114)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~ 731 (1114)
.+++.+
T Consensus 236 TLiqS~-------------------------------------------------------------------------- 241 (691)
T KOG2048|consen 236 TLIQSH-------------------------------------------------------------------------- 241 (691)
T ss_pred chhhhh--------------------------------------------------------------------------
Confidence 222222
Q ss_pred ccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCcccccc
Q 001248 732 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND 811 (1114)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~ 811 (1114)
..|...|.+++.+++++++++++.|+.+.-+....... -|-...
T Consensus 242 ----------------~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~-------------~wv~~~------- 285 (691)
T KOG2048|consen 242 ----------------SCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS-------------EWVINS------- 285 (691)
T ss_pred ----------------hhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc-------------ceeeec-------
Confidence 12678899999999999999999999888876653211 021111
Q ss_pred CCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeE-EEEEecCCCcEEEEEeCCCcEEEEEc
Q 001248 812 VTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAAT-FLAFHPQDNNIIAIGMDDSSIQIYNV 889 (1114)
Q Consensus 812 ~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~-~l~~sp~d~~~la~g~~dg~v~iwd~ 889 (1114)
....|...+.+++..++ .+++|+ |.++.+-.....+...........-. -+...| .++|..--.+..+.+|.+
T Consensus 286 -~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~--~~~L~~~w~~h~v~lwrl 360 (691)
T KOG2048|consen 286 -RRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAP--ENRLLVLWKAHGVDLWRL 360 (691)
T ss_pred -cccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhhccccccccceeecCc--cceEEEEeccccccceec
Confidence 11238889999999887 777777 88877765543222111110001111 122333 334444445667778877
Q ss_pred ccce---------EEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEE
Q 001248 890 RVDE---------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF 960 (1114)
Q Consensus 890 ~~~~---------~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~f 960 (1114)
.+.. +++-...-...|.+.+.||||++++.+.-- .++||.+..........+...... ......+.|
T Consensus 361 GS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~~vk~~~v~~~~~~---~~~a~~i~f 436 (691)
T KOG2048|consen 361 GSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVS-RTKIYRLQPDPNVKVINVDDVPLA---LLDASAISF 436 (691)
T ss_pred cCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeecc-ceEEEEeccCcceeEEEeccchhh---hccceeeEE
Confidence 6541 122222233559999999999999987644 478888876332222221111111 125678899
Q ss_pred ccCCcEEEE-E-eCCeEEEEEcCCCce--eeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCC
Q 001248 961 HQDQIHFLV-V-HETQLAIFETTKLEC--VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPS 1036 (1114)
Q Consensus 961 spdg~~l~~-~-~d~~i~iwd~~~~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~ 1036 (1114)
+-|+..++. + .+..+.+++..+... +..+...+-...|..+..|+||+|||+.+.+|.|.+|++.+++.......
T Consensus 437 tid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~r- 515 (691)
T KOG2048|consen 437 TIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVR- 515 (691)
T ss_pred EecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhc-
Confidence 999888777 5 667888888776543 33333223356899999999999999999999999999999987754420
Q ss_pred cccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1037 AYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1037 ~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
+. ...++++|+|.+-+.|+.+..|+.|+-+|++..+
T Consensus 516 --ln-------~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~ 551 (691)
T KOG2048|consen 516 --LN-------IDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARN 551 (691)
T ss_pred --cC-------cceeeeeccccccCcEEEEecCCeEEEEecchhh
Confidence 11 3344788887777889999999999999995544
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-32 Score=256.93 Aligned_cols=246 Identities=20% Similarity=0.340 Sum_probs=196.5
Q ss_pred EeccCCCCceEEEEcCC-CCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCC
Q 001248 353 RTLNQGSSPMSMDFHPV-QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 431 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spd-g~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd 431 (1114)
.+.+|++.|+.++|+|- |. +||+++.|..|+||+...+.....+ ..+-.+|+..|+.+||||.
T Consensus 9 ~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~ck---------------~vld~~hkrsVRsvAwsp~ 72 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTCK---------------TVLDDGHKRSVRSVAWSPH 72 (312)
T ss_pred eecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEEE---------------EeccccchheeeeeeecCC
Confidence 34459999999999998 77 7999999999999999864333211 1134689999999999999
Q ss_pred CCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCC---cceeEeecc
Q 001248 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG---AKQYIFEGH 508 (1114)
Q Consensus 432 g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~h 508 (1114)
|++||+|+-|.++.||.-..++ .....++.||...|.|++|+++|. +|||++.|++|.||.+..+ .++..++.|
T Consensus 73 g~~La~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL~~H 149 (312)
T KOG0645|consen 73 GRYLASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVLQEH 149 (312)
T ss_pred CcEEEEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeeeccc
Confidence 9999999999999999877554 556678999999999999999999 8999999999999998854 456789999
Q ss_pred ccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCC---CCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCC
Q 001248 509 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL---GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 585 (1114)
Q Consensus 509 ~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~ 585 (1114)
...|..+.|+|+. .+|++++.|++|++|+-... .+..++..+...|.+ +.|++.
T Consensus 150 tqDVK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~---------------------~~F~~~ 206 (312)
T KOG0645|consen 150 TQDVKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWS---------------------LAFDNI 206 (312)
T ss_pred cccccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEE---------------------EEecCC
Confidence 9999999999987 49999999999999976531 234445555444444 445555
Q ss_pred CCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEcc
Q 001248 586 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 648 (1114)
Q Consensus 586 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~ 648 (1114)
|..|++++.|++++||...+. +. ..+...+..++|. ...|++++.|+.|++|...
T Consensus 207 G~rl~s~sdD~tv~Iw~~~~~-----~~-~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s 261 (312)
T KOG0645|consen 207 GSRLVSCSDDGTVSIWRLYTD-----LS-GMHSRALYDVPWD--NGVIASGGGDDAIRLFKES 261 (312)
T ss_pred CceEEEecCCcceEeeeeccC-----cc-hhcccceEeeeec--ccceEeccCCCEEEEEEec
Confidence 557999999999999986522 11 1123457788888 5578999999999999654
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=263.26 Aligned_cols=291 Identities=20% Similarity=0.338 Sum_probs=239.5
Q ss_pred ccccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEE
Q 001248 414 ALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 493 (1114)
Q Consensus 414 ~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~i 493 (1114)
..+.+|++.|..+.|+|+|.+||+|+.|..|.+|++.... ....++.+|.++|..+.|.+|+. .+++++.|++|+.
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRG 116 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceEEE
Confidence 4688999999999999999999999999999999976532 22336889999999999999999 7999999999999
Q ss_pred EeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeec
Q 001248 494 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR 573 (1114)
Q Consensus 494 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~ 573 (1114)
||+++|++++.+++|..-|++++.. ..+-.++.+++.|+++++||+++.+...++.. ..+++++.|
T Consensus 117 wD~~tG~~~rk~k~h~~~vNs~~p~-rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f------------ 182 (338)
T KOG0265|consen 117 WDAETGKRIRKHKGHTSFVNSLDPS-RRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGF------------ 182 (338)
T ss_pred EecccceeeehhccccceeeecCcc-ccCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEe------------
Confidence 9999999999999999999999832 23335788889999999999998766654432 223444444
Q ss_pred ccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCc--
Q 001248 574 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI-- 651 (1114)
Q Consensus 574 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~-- 651 (1114)
..++..+++|+-|+.|++||++....+..+.+| ...|+.+..+++|.++.+-+-|.++++||++.-.
T Consensus 183 ---------~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh--~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~ 251 (338)
T KOG0265|consen 183 ---------KDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGH--ADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPS 251 (338)
T ss_pred ---------cccccceeeccccCceeeeccccCcceEEeecc--cCceeeEEeccCCCccccccccceEEEEEecccCCC
Confidence 444457999999999999999999999999877 5589999999999999999999999999975431
Q ss_pred -cceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEE
Q 001248 652 -RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 730 (1114)
Q Consensus 652 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~ 730 (1114)
+++..++++.
T Consensus 252 ~R~v~if~g~~--------------------------------------------------------------------- 262 (338)
T KOG0265|consen 252 QRCVKIFQGHI--------------------------------------------------------------------- 262 (338)
T ss_pred CceEEEeecch---------------------------------------------------------------------
Confidence 0011111000
Q ss_pred eccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccc
Q 001248 731 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 810 (1114)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~ 810 (1114)
|
T Consensus 263 -------------------h------------------------------------------------------------ 263 (338)
T KOG0265|consen 263 -------------------H------------------------------------------------------------ 263 (338)
T ss_pred -------------------h------------------------------------------------------------
Confidence 0
Q ss_pred cCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 001248 811 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY 887 (1114)
Q Consensus 811 ~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iw 887 (1114)
+.......++|+|++..+..|+ |..+++||..+...+..+++|.+.|.+++|+| ...+|.+++.|.+|++=
T Consensus 264 -----nfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp-~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 264 -----NFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHP-TEPIILSCSSDKTIYLG 335 (338)
T ss_pred -----hhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecC-CCcEEEEeccCceeEee
Confidence 0122244578999999999998 99999999999999999999999999999999 88999999999999874
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=306.37 Aligned_cols=274 Identities=15% Similarity=0.219 Sum_probs=234.1
Q ss_pred cccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeC
Q 001248 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d 829 (1114)
....+.+..|++|+..++.+..|..|++|.+...+..+ ++ +.. +
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~------------------------lk---~~~---------~ 420 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKK------------------------LK---DAS---------D 420 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhcc------------------------cc---chh---------h
Confidence 45678999999999999999999999999875321100 00 000 1
Q ss_pred CCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEE
Q 001248 830 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL 908 (1114)
Q Consensus 830 ~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l 908 (1114)
...+=+.+ |-.+...|-.+....+++.+|.++|..+.|+| +.++|+++++|++||+|.+.+..++...+||..+|+.+
T Consensus 421 l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV 499 (707)
T KOG0263|consen 421 LSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDV 499 (707)
T ss_pred hccccccccchhhhhccccCCceeEEeecCCCceeeeeecc-cccceeeccCCcceeeeecccceeEEEecCCCcceeeE
Confidence 11111222 33366667777777788999999999999999 99999999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCCCceee
Q 001248 909 AFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVK 987 (1114)
Q Consensus 909 ~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~~~~~~ 987 (1114)
.|+|-|-++||+|.|++-++|..+. ..+++++.+|.. .|.|+.|+|++.|+++ +.|.++++||+.+|..++
T Consensus 500 ~F~P~GyYFatas~D~tArLWs~d~-----~~PlRifaghls---DV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VR 571 (707)
T KOG0263|consen 500 QFAPRGYYFATASHDQTARLWSTDH-----NKPLRIFAGHLS---DVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVR 571 (707)
T ss_pred EecCCceEEEecCCCceeeeeeccc-----CCchhhhccccc---ccceEEECCcccccccCCCCceEEEEEcCCCcEEE
Confidence 9999999999999999999999988 346778888874 8999999999999999 689999999999999999
Q ss_pred eeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEe
Q 001248 988 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1067 (1114)
Q Consensus 988 ~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~ 1067 (1114)
.|. ||.++|++++|||+|++|++|+.||.|.+||+.+++++..+. +|.+. ++ ++.|+. ||..||+|+
T Consensus 572 iF~--GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~-------~Ht~t-i~--SlsFS~-dg~vLasgg 638 (707)
T KOG0263|consen 572 IFT--GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLK-------GHTGT-IY--SLSFSR-DGNVLASGG 638 (707)
T ss_pred Eec--CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhh-------cccCc-ee--EEEEec-CCCEEEecC
Confidence 997 899999999999999999999999999999999999998887 55333 66 899998 799999999
Q ss_pred CCCcEEEEeccCCC
Q 001248 1068 SDGGVHVFEPLESE 1081 (1114)
Q Consensus 1068 ~Dg~v~vW~i~~~~ 1081 (1114)
.|++|++||+..-.
T Consensus 639 ~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 639 ADNSVRLWDLTKVI 652 (707)
T ss_pred CCCeEEEEEchhhc
Confidence 99999999997755
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=271.09 Aligned_cols=252 Identities=19% Similarity=0.300 Sum_probs=219.7
Q ss_pred CCcceeEecc-CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeE
Q 001248 347 LPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR 425 (1114)
Q Consensus 347 ~~~~~~~~~~-h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~ 425 (1114)
.|-++.+.+. |.+.|.|+++-|-.++ ++||+.|++|.|||+.+|+... .+.||-..|..
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP~n~w-f~tgs~DrtikIwDlatg~Lkl-------------------tltGhi~~vr~ 198 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDPGNEW-FATGSADRTIKIWDLATGQLKL-------------------TLTGHIETVRG 198 (460)
T ss_pred CcceehhhhhhccceEEEEeeCCCcee-EEecCCCceeEEEEcccCeEEE-------------------eecchhheeee
Confidence 3445555555 9999999999999886 9999999999999999998876 48999999999
Q ss_pred EEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEe
Q 001248 426 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 505 (1114)
Q Consensus 426 l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 505 (1114)
+++|+--.||.+++.|+.|+-||+...+.++ .+.||-..|.|++..|.-. .|+||+.|.+++|||+++...+.++
T Consensus 199 vavS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~~l 273 (460)
T KOG0285|consen 199 VAVSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVHVL 273 (460)
T ss_pred eeecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEEEe
Confidence 9999999999999999999999999988777 7889999999999999988 8999999999999999999999999
Q ss_pred eccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCC
Q 001248 506 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 585 (1114)
Q Consensus 506 ~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~ 585 (1114)
.||..+|..+.+.+.. ..+++|+.|++|++||+..++....+..|...+.+++. +|.
T Consensus 274 ~GH~~~V~~V~~~~~d--pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~l---------------------hP~ 330 (460)
T KOG0285|consen 274 SGHTNPVASVMCQPTD--PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCL---------------------HPK 330 (460)
T ss_pred cCCCCcceeEEeecCC--CceEEecCCceEEEeeeccCceeEeeecccceeeEEec---------------------CCc
Confidence 9999999999875543 58999999999999999988877776666655555554 455
Q ss_pred CCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 586 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 586 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
.+.+++++.| .|+.|++..|..+..+.++ ...|++++.+.|| ++++|++.|.+.+||.+++
T Consensus 331 e~~fASas~d-nik~w~~p~g~f~~nlsgh--~~iintl~~nsD~-v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 331 ENLFASASPD-NIKQWKLPEGEFLQNLSGH--NAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred hhhhhccCCc-cceeccCCccchhhccccc--cceeeeeeeccCc-eEEEcCCceEEEEEecCcC
Confidence 5567777765 5899999999999987766 4468899988776 6788999999999999988
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-30 Score=283.92 Aligned_cols=449 Identities=15% Similarity=0.256 Sum_probs=313.4
Q ss_pred ccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEe
Q 001248 416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495 (1114)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd 495 (1114)
+..-+..|..++|+|..-+++++-..|.|++||..-+..+. .|.+|.++|..++|.|++. +++|||+|..|+||+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence 33455689999999999999999999999999999888777 7899999999999999999 899999999999999
Q ss_pred CCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeeccc
Q 001248 496 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 575 (1114)
Q Consensus 496 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~ 575 (1114)
..+.+++.++.||.+.|..+.|+..- .+++|+|.|.+|++|++.+.+++..+.+|.+.|.+..|.|.
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhpt----------- 146 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPT----------- 146 (1202)
T ss_pred cccceehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCc-----------
Confidence 99999999999999999999998765 69999999999999999999999999999887776666553
Q ss_pred ceeEEEecCCCCEEEEEeCCCeEEEEECCCcce---------------------------EEEeccCCCCCCcCeEEEcC
Q 001248 576 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL---------------------------LTSIDADGGLPASPRIRFNK 628 (1114)
Q Consensus 576 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---------------------------~~~~~~~~~~~~v~~~~~s~ 628 (1114)
...++++|-|.+||+||+..-+. +...-..+|...|+-++|+|
T Consensus 147 ----------EDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp 216 (1202)
T KOG0292|consen 147 ----------EDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP 216 (1202)
T ss_pred ----------cceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC
Confidence 44799999999999999853221 11111223344566667776
Q ss_pred CCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCc
Q 001248 629 DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDV 708 (1114)
Q Consensus 629 d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (1114)
.-.++++|+.|..|++|.+...
T Consensus 217 TlpliVSG~DDRqVKlWrmnet---------------------------------------------------------- 238 (1202)
T KOG0292|consen 217 TLPLIVSGADDRQVKLWRMNET---------------------------------------------------------- 238 (1202)
T ss_pred CcceEEecCCcceeeEEEeccc----------------------------------------------------------
Confidence 6666777777777777755322
Q ss_pred cccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCC
Q 001248 709 RSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSS 788 (1114)
Q Consensus 709 ~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 788 (1114)
+.|.+++ | .+|.+.|+++.|+|..+.+++.++|++|+|||+...+.
T Consensus 239 ------------------KaWEvDt------c-------rgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~--- 284 (1202)
T KOG0292|consen 239 ------------------KAWEVDT------C-------RGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTS--- 284 (1202)
T ss_pred ------------------cceeehh------h-------hcccCCcceEEecCccceeEecCCCccEEEEecccccc---
Confidence 1233221 1 45999999999999999999999999999999863211
Q ss_pred CCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEe
Q 001248 789 GKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFH 868 (1114)
Q Consensus 789 ~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s 868 (1114)
+.. +. ........++..|..++++.|.|+.+.||.++... ++. +.+
T Consensus 285 -------------------v~t-fr--rendRFW~laahP~lNLfAAgHDsGm~VFkleREr----------pa~--~v~ 330 (1202)
T KOG0292|consen 285 -------------------VQT-FR--RENDRFWILAAHPELNLFAAGHDSGMIVFKLERER----------PAY--AVN 330 (1202)
T ss_pred -------------------eee-ee--ccCCeEEEEEecCCcceeeeecCCceEEEEEcccC----------ceE--EEc
Confidence 110 11 14567888999999999999999988888876422 222 333
Q ss_pred cCCCcEEEEEeCCCcEEEEEcccce--EEEeeccc---ccCeeEEEEcCCCCEE-EEEeCC-CcEEEEeCCCCccccccc
Q 001248 869 PQDNNIIAIGMDDSSIQIYNVRVDE--VKSKLKGH---SKRITGLAFSHALNVL-VSSGAD-SQLCVWSSDGWEKQKNRF 941 (1114)
Q Consensus 869 p~d~~~la~g~~dg~v~iwd~~~~~--~~~~l~~h---~~~V~~l~~s~d~~~l-~s~s~D-~~v~iwd~~~~~~~~~~~ 941 (1114)
++ .|...- |..|+-+|+.+.+ .+..++.- ..++.++.++|....+ ++...| +.--++.+..........
T Consensus 331 --~n-~LfYvk-d~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~ 406 (1202)
T KOG0292|consen 331 --GN-GLFYVK-DRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDG 406 (1202)
T ss_pred --CC-EEEEEc-cceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCc
Confidence 33 333333 8899999998854 33445543 3678899999975544 443333 444455554421111110
Q ss_pred cccCCCCCCCCCCceEEEEccCCcEEEEE-eCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEE
Q 001248 942 LQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVC 1020 (1114)
Q Consensus 942 ~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~ 1020 (1114)
.....+ .-....|-..+++.+.. .+.++.+-++.+.... .+.. ...+..|-+..+|.+|+.. ...|.
T Consensus 407 ~~~~k~------tG~~a~fvarNrfavl~k~~~~v~ik~l~N~vtk-kl~~---~~~~~~IF~ag~g~lll~~--~~~v~ 474 (1202)
T KOG0292|consen 407 KDVKKG------TGEGALFVARNRFAVLDKSNEQVVIKNLKNKVTK-KLLL---PESTDDIFYAGTGNLLLRS--PDSVT 474 (1202)
T ss_pred hhhhcC------CCCceEEEEecceEEEEecCcceEEecccchhhh-cccC---cccccceeeccCccEEEEc--CCeEE
Confidence 000000 11223333333443332 3555655555433222 2211 1234555666677665543 56799
Q ss_pred EEEcCCCeeeEEeC
Q 001248 1021 VFSAANLKLRCRIN 1034 (1114)
Q Consensus 1021 vwd~~~~~~~~~~~ 1034 (1114)
+||+..++.+..++
T Consensus 475 lfdvQq~~~~~si~ 488 (1202)
T KOG0292|consen 475 LFDVQQKKKVGSIK 488 (1202)
T ss_pred EEEeecceEEEEEe
Confidence 99999998888776
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-32 Score=261.46 Aligned_cols=256 Identities=18% Similarity=0.229 Sum_probs=218.4
Q ss_pred CcceeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEE
Q 001248 348 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 427 (1114)
Q Consensus 348 ~~~~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 427 (1114)
........+|+++|..+.|+|+|.+ +|+|+.|..|.+|++.....-. .++++|.++|..+.
T Consensus 37 ~ap~m~l~gh~geI~~~~F~P~gs~-~aSgG~Dr~I~LWnv~gdceN~------------------~~lkgHsgAVM~l~ 97 (338)
T KOG0265|consen 37 QAPIMLLPGHKGEIYTIKFHPDGSC-FASGGSDRAIVLWNVYGDCENF------------------WVLKGHSGAVMELH 97 (338)
T ss_pred cchhhhcCCCcceEEEEEECCCCCe-EeecCCcceEEEEeccccccce------------------eeeccccceeEeee
Confidence 3344566779999999999999995 9999999999999976433221 15789999999999
Q ss_pred EcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeec
Q 001248 428 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG 507 (1114)
Q Consensus 428 ~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 507 (1114)
|.+|+..|++++.|++|+.||.++|++.+ .+.+|..-|+++.-+.-|.. ++.|++.|+++++||+++..+++++.
T Consensus 98 ~~~d~s~i~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~- 172 (338)
T KOG0265|consen 98 GMRDGSHILSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE- 172 (338)
T ss_pred eccCCCEEEEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-
Confidence 99999999999999999999999999877 68899999999997777776 78999999999999999999888885
Q ss_pred cccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCC
Q 001248 508 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 587 (1114)
Q Consensus 508 h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~ 587 (1114)
..-.+++++|.. .+..+++|+-|+.|++||++.......+.+|.+.|+.+..+++|.
T Consensus 173 ~kyqltAv~f~d--~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs--------------------- 229 (338)
T KOG0265|consen 173 NKYQLTAVGFKD--TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGS--------------------- 229 (338)
T ss_pred cceeEEEEEecc--cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCC---------------------
Confidence 456788888754 446899999999999999999999999999999999888888876
Q ss_pred EEEEEeCCCeEEEEECCC----cceEEEeccCCCC--CCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 588 RFLAAGDDFSIKFWDMDS----VQLLTSIDADGGL--PASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 588 ~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~--~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
++++-+.|.++++||++. .+++..+.++.+. .....++|+|++..+.+|+.|..+++||....
T Consensus 230 ~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 230 FLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR 298 (338)
T ss_pred ccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc
Confidence 688999999999999874 3456777665443 23457899999999999999999999997654
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-32 Score=266.83 Aligned_cols=294 Identities=16% Similarity=0.322 Sum_probs=245.9
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw 494 (1114)
++.+|.+.|.|+++.|-..++++|+.|++|+|||+.+|+... ++.||...|..+++|+-.. |+++++.|+.|+.|
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKCw 220 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCW 220 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEEE
Confidence 689999999999999999999999999999999999998655 7999999999999999888 89999999999999
Q ss_pred eCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecc
Q 001248 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1114)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~ 574 (1114)
|++..+.++.+.||-..|.+++.+|.- ..|++|+.|.++++||+++...+..+.+|...|.++.+.|-..
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dp-------- 290 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDP-------- 290 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCC--------
Confidence 999999999999999999999998876 5899999999999999999999999999998888877665433
Q ss_pred cceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccce
Q 001248 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 654 (1114)
Q Consensus 575 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~ 654 (1114)
.+++|+.|++|++||+..|+...++..|. ..+.+++.+|....+++++.| .|+-|++..+ ..+
T Consensus 291 -------------qvit~S~D~tvrlWDl~agkt~~tlt~hk--ksvral~lhP~e~~fASas~d-nik~w~~p~g-~f~ 353 (460)
T KOG0285|consen 291 -------------QVITGSHDSTVRLWDLRAGKTMITLTHHK--KSVRALCLHPKENLFASASPD-NIKQWKLPEG-EFL 353 (460)
T ss_pred -------------ceEEecCCceEEEeeeccCceeEeeeccc--ceeeEEecCCchhhhhccCCc-cceeccCCcc-chh
Confidence 59999999999999999999999988774 479999999999999998886 5788887766 222
Q ss_pred eeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccC
Q 001248 655 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 734 (1114)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~ 734 (1114)
..+.
T Consensus 354 ~nls---------------------------------------------------------------------------- 357 (460)
T KOG0285|consen 354 QNLS---------------------------------------------------------------------------- 357 (460)
T ss_pred hccc----------------------------------------------------------------------------
Confidence 2222
Q ss_pred CCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCC
Q 001248 735 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 814 (1114)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~ 814 (1114)
+|..-|.+++.+.|+- +++++++|.+..||+..+..-..+.... .-|.+
T Consensus 358 --------------gh~~iintl~~nsD~v-~~~G~dng~~~fwdwksg~nyQ~~~t~v---------qpGSl------- 406 (460)
T KOG0285|consen 358 --------------GHNAIINTLSVNSDGV-LVSGGDNGSIMFWDWKSGHNYQRGQTIV---------QPGSL------- 406 (460)
T ss_pred --------------cccceeeeeeeccCce-EEEcCCceEEEEEecCcCcccccccccc---------cCCcc-------
Confidence 2666777888877774 8889999999999987543211111000 01111
Q ss_pred CCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCC
Q 001248 815 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT 848 (1114)
Q Consensus 815 ~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~ 848 (1114)
..+..|.+.+|...|..|+++. |.+|++|.-..
T Consensus 407 -~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 407 -ESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred -ccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 1456789999999999999998 99999997653
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=275.34 Aligned_cols=285 Identities=16% Similarity=0.262 Sum_probs=241.2
Q ss_pred cccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeC
Q 001248 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d 829 (1114)
....|..+.+.|+|+.|++++..|...+|+.....+ ..+ + ..|++.|+++.|+++
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF-------------------Eti----l--QaHDs~Vr~m~ws~~ 149 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF-------------------ETI----L--QAHDSPVRTMKWSHN 149 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeH-------------------HHH----h--hhhcccceeEEEccC
Confidence 346789999999999999999999999997532111 001 1 139999999999999
Q ss_pred CCEEEEEe-CCeEEEEEcCCCccccccCCCC-CCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeE
Q 001248 830 DSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG 907 (1114)
Q Consensus 830 ~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 907 (1114)
|.++++|+ +|.|++|+..- ..++.+..|. ..|++++||| ....++++++||+|+|||....+.-..+.||.-.|.+
T Consensus 150 g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVks 227 (464)
T KOG0284|consen 150 GTWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKS 227 (464)
T ss_pred CCEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcce
Confidence 99999999 89999999754 4455555554 8899999999 6667889999999999999988888899999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCCCcee
Q 001248 908 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECV 986 (1114)
Q Consensus 908 l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~~~~~ 986 (1114)
++|+|...+|||+|.|..|++||..++. ++..+.+|.. .|..+.|++++.+|++ +.|..+++||+++.+.+
T Consensus 228 vdWHP~kgLiasgskDnlVKlWDprSg~-----cl~tlh~HKn---tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl 299 (464)
T KOG0284|consen 228 VDWHPTKGLIASGSKDNLVKLWDPRSGS-----CLATLHGHKN---TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKEL 299 (464)
T ss_pred eccCCccceeEEccCCceeEeecCCCcc-----hhhhhhhccc---eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHH
Confidence 9999999999999999999999999954 5777777774 8999999999999999 79999999999988887
Q ss_pred eeeecCCCCcCeeEEEECC-CCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEE
Q 001248 987 KQWVPRESSAPITHATFSC-DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1065 (1114)
Q Consensus 987 ~~~~~~~h~~~v~~l~~s~-dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s 1065 (1114)
..+. +|...|++++|+| ...+|.+|+.||.|..|.+...+.+..+. .+|... |+ +++|+| =|.+|++
T Consensus 300 ~~~r--~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~------~AHd~~-iw--sl~~hP-lGhil~t 367 (464)
T KOG0284|consen 300 FTYR--GHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP------PAHDGE-IW--SLAYHP-LGHILAT 367 (464)
T ss_pred HHhh--cchhhheeeccccccccceeeccCCCceEEEeccccccccCCC------cccccc-ee--eeeccc-cceeEee
Confidence 7765 8999999999999 45578899999999999999666664433 444333 77 899999 5899999
Q ss_pred EeCCCcEEEEeccCCC
Q 001248 1066 GLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1066 ~~~Dg~v~vW~i~~~~ 1081 (1114)
|+.|.++++|.-....
T Consensus 368 gsnd~t~rfw~r~rp~ 383 (464)
T KOG0284|consen 368 GSNDRTVRFWTRNRPG 383 (464)
T ss_pred cCCCcceeeeccCCCC
Confidence 9999999999875543
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-30 Score=263.44 Aligned_cols=432 Identities=17% Similarity=0.239 Sum_probs=314.9
Q ss_pred eeEecc-CCCCceEEEEcCC--CCeEEEE-EecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEE
Q 001248 351 VTRTLN-QGSSPMSMDFHPV--QQTLLLV-GTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV 426 (1114)
Q Consensus 351 ~~~~~~-h~~~v~~v~~spd--g~~ll~t-g~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l 426 (1114)
.++.++ -...|+|++||+- |.++++. -+.+..+.|||+..+..... .+.-+..|...
T Consensus 146 TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~-------------------vk~sne~v~~a 206 (626)
T KOG2106|consen 146 TLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGP-------------------VKTSNEVVFLA 206 (626)
T ss_pred eeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCc-------------------ceeccceEEEE
Confidence 345555 6788999999983 4543433 23345688999988766542 23345578899
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeecccc-CCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEe
Q 001248 427 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 505 (1114)
Q Consensus 427 ~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~-~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 505 (1114)
+|.|-+.-|++....+.+..|+.+++...+....+.++. .-|.|++|.++|. ++||..+|.|.||+..+.+..+..
T Consensus 207 ~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd---viTgDS~G~i~Iw~~~~~~~~k~~ 283 (626)
T KOG2106|consen 207 TFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD---VITGDSGGNILIWSKGTNRISKQV 283 (626)
T ss_pred EeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC---EEeecCCceEEEEeCCCceEEeEe
Confidence 999966666666667889999999988777666666554 4699999999998 899999999999998877777777
Q ss_pred eccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeee--ecCCCCeeEEEEEe-------------------cC
Q 001248 506 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD--YEAPGRWCTTMAYS-------------------AD 564 (1114)
Q Consensus 506 ~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~--~~~~~~~v~~~~~s-------------------~~ 564 (1114)
..|.+.|.+++... +| .|++|+.|+.|..|| ..-+.+.. +....+.+..++-. ..
T Consensus 284 ~aH~ggv~~L~~lr--~G-tllSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~ 359 (626)
T KOG2106|consen 284 HAHDGGVFSLCMLR--DG-TLLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENG 359 (626)
T ss_pred eecCCceEEEEEec--Cc-cEeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCC
Confidence 79999999999643 43 577799999999999 33333322 22222333333211 11
Q ss_pred CCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEE
Q 001248 565 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 644 (1114)
Q Consensus 565 g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~i 644 (1114)
-.....+|.+ ...-++.+|+.+++++++.|+.+++|+ ..+++.+.... .++.|+.|+|.| .++.|+..|...+
T Consensus 360 f~~~v~gh~d-elwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~---d~~~~~~fhpsg-~va~Gt~~G~w~V 432 (626)
T KOG2106|consen 360 FTLTVQGHGD-ELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIE---DPAECADFHPSG-VVAVGTATGRWFV 432 (626)
T ss_pred ceEEEEeccc-ceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEec---CceeEeeccCcc-eEEEeeccceEEE
Confidence 1133334444 666788899999999999999999999 44454444332 357899999999 8999999999999
Q ss_pred EEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCC
Q 001248 645 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND 724 (1114)
Q Consensus 645 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 724 (1114)
.|.++. ..+..-
T Consensus 433 ~d~e~~-~lv~~~------------------------------------------------------------------- 444 (626)
T KOG2106|consen 433 LDTETQ-DLVTIH------------------------------------------------------------------- 444 (626)
T ss_pred Eecccc-eeEEEE-------------------------------------------------------------------
Confidence 988764 222110
Q ss_pred ceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCC
Q 001248 725 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPS 804 (1114)
Q Consensus 725 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~ 804 (1114)
....+++.+.|+|+|.+|++++.|+.|+||.++...
T Consensus 445 ------------------------~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g-------------------- 480 (626)
T KOG2106|consen 445 ------------------------TDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANG-------------------- 480 (626)
T ss_pred ------------------------ecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCC--------------------
Confidence 124688999999999999999999999999886432
Q ss_pred CccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCcccccc------------------CCCCCCeEEE
Q 001248 805 GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATF------------------MPPPPAATFL 865 (1114)
Q Consensus 805 g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~------------------~~~~~~i~~l 865 (1114)
+...+.-.. +..+|+.+.||+|++++.+-+ |-.|..|........... ..+...|..+
T Consensus 481 -~~y~r~~k~--~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~ 557 (626)
T KOG2106|consen 481 -RKYSRVGKC--SGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAV 557 (626)
T ss_pred -cEEEEeeee--cCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHh
Confidence 211111111 448899999999999999998 888999954332222111 1234456677
Q ss_pred EEecCCCcEEEEEeCCCcEEEEEcccc---eEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001248 866 AFHPQDNNIIAIGMDDSSIQIYNVRVD---EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 931 (1114)
Q Consensus 866 ~~sp~d~~~la~g~~dg~v~iwd~~~~---~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~ 931 (1114)
+-+. ..+++|+|.+.|+|++|...-- ....+..+|++-|++++|.-+...|++.+.|..|..|++
T Consensus 558 ~rs~-~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 558 ARSH-CEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred hhhh-hhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 7777 7889999999999999987643 234667899999999999988889998889999999986
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-31 Score=251.48 Aligned_cols=293 Identities=16% Similarity=0.222 Sum_probs=236.6
Q ss_pred cccccceEEEEEccC-cceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEE
Q 001248 748 NLRATKISRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL 826 (1114)
Q Consensus 748 ~~~~~~i~~l~~s~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~ 826 (1114)
.+|.+++..++++|- |..|++++.|..|++|+..... +=.+.. ....+|...|+++++
T Consensus 11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~-------------------s~~ck~--vld~~hkrsVRsvAw 69 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD-------------------SWTCKT--VLDDGHKRSVRSVAW 69 (312)
T ss_pred cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC-------------------cEEEEE--eccccchheeeeeee
Confidence 348889999999999 8899999999999999875200 001111 122359999999999
Q ss_pred eeCCCEEEEEe-CCeEEEEEcC--CCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc---eEEEeecc
Q 001248 827 SKNDSYVMSAS-GGKISLFNMM--TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD---EVKSKLKG 900 (1114)
Q Consensus 827 s~d~~~l~~~~-dg~i~iwd~~--~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~---~~~~~l~~ 900 (1114)
+|.|++||+++ |.++.||.-. ..+++.++.+|..+|.+++|++ +|++||+++.|..|-||.+..+ ++...+++
T Consensus 70 sp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~ 148 (312)
T KOG0645|consen 70 SPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQE 148 (312)
T ss_pred cCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeecc
Confidence 99999999999 9999999876 4577889999999999999999 9999999999999999999753 67889999
Q ss_pred cccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEE
Q 001248 901 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFE 979 (1114)
Q Consensus 901 h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd 979 (1114)
|...|..+.|+|...+|+|+|.|.+|++|.-.. .....+.+.+.+|.. .|.+++|.+.|..|++ +.|++++||.
T Consensus 149 HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~--dddW~c~~tl~g~~~---TVW~~~F~~~G~rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 149 HTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDED--DDDWECVQTLDGHEN---TVWSLAFDNIGSRLVSCSDDGTVSIWR 223 (312)
T ss_pred ccccccEEEEcCCcceeEEeccCCeEEEEeecC--CCCeeEEEEecCccc---eEEEEEecCCCceEEEecCCcceEeee
Confidence 999999999999999999999999999998774 234678888888874 8999999999988888 5889999998
Q ss_pred cCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCC
Q 001248 980 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1059 (1114)
Q Consensus 980 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d 1059 (1114)
..+. ....|+..++.++|. ...|++++.|+.|++|.-...-.--.++.-......| ...|+ ++.|.|..
T Consensus 224 ~~~~------~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aH-e~dVN--sV~w~p~~ 292 (312)
T KOG0645|consen 224 LYTD------LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAH-EVDVN--SVQWNPKV 292 (312)
T ss_pred eccC------cchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccc-ccccc--eEEEcCCC
Confidence 6511 123678999999998 5589999999999999876431111111111111122 23467 99999965
Q ss_pred CCeEEEEeCCCcEEEEecc
Q 001248 1060 PNEFALGLSDGGVHVFEPL 1078 (1114)
Q Consensus 1060 ~~~l~s~~~Dg~v~vW~i~ 1078 (1114)
.++|++|+.||.|++|.+.
T Consensus 293 ~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 293 SNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCceeecCCCceEEEEEec
Confidence 7899999999999999875
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=279.53 Aligned_cols=290 Identities=19% Similarity=0.307 Sum_probs=249.0
Q ss_pred cccCCCCCeeEEEEcC-CCCeEEEEeCCCeEEEEEccC-CceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEE
Q 001248 415 LVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 492 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~sp-dg~~las~~~dg~i~iwd~~~-~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~ 492 (1114)
.+.||+..|+++.|.| .+.+|++++.|+.|+||++-. +++++ ++.+|..+|.+++|+++|. .++|+|.|+.|+
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr---tf~gH~k~Vrd~~~s~~g~--~fLS~sfD~~lK 283 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR---TFKGHRKPVRDASFNNCGT--SFLSASFDRFLK 283 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh---hhhcchhhhhhhhccccCC--eeeeeecceeee
Confidence 5889999999999999 999999999999999999987 66666 8999999999999999999 699999999999
Q ss_pred EEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeee
Q 001248 493 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF 572 (1114)
Q Consensus 493 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~ 572 (1114)
+||+++|+++..+. -...+.++.|++++ .+.+++|+.|+.|+.||+++++.+..+..|.+.|..+.|-++|+
T Consensus 284 lwDtETG~~~~~f~-~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~------ 355 (503)
T KOG0282|consen 284 LWDTETGQVLSRFH-LDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGR------ 355 (503)
T ss_pred eeccccceEEEEEe-cCCCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCc------
Confidence 99999999999887 45677888988776 37899999999999999999999999999999999998888887
Q ss_pred cccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCcc
Q 001248 573 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR 652 (1114)
Q Consensus 573 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~ 652 (1114)
++++.++|++++||+.+.+..+..+.... .....++..+|+++++++-+.|+.|.++.+....+
T Consensus 356 ---------------rFissSDdks~riWe~~~~v~ik~i~~~~-~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r 419 (503)
T KOG0282|consen 356 ---------------RFISSSDDKSVRIWENRIPVPIKNIADPE-MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR 419 (503)
T ss_pred ---------------eEeeeccCccEEEEEcCCCccchhhcchh-hccCcceecCCCCCeehhhccCceEEEEecccccc
Confidence 69999999999999999887776554332 23578999999999999999999999997543311
Q ss_pred c--eeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEE
Q 001248 653 L--LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 730 (1114)
Q Consensus 653 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~ 730 (1114)
. .+.+++|.
T Consensus 420 ~nkkK~feGh~--------------------------------------------------------------------- 430 (503)
T KOG0282|consen 420 LNKKKRFEGHS--------------------------------------------------------------------- 430 (503)
T ss_pred cCHhhhhccee---------------------------------------------------------------------
Confidence 0 01111100
Q ss_pred eccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccc
Q 001248 731 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 810 (1114)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~ 810 (1114)
T Consensus 431 -------------------------------------------------------------------------------- 430 (503)
T KOG0282|consen 431 -------------------------------------------------------------------------------- 430 (503)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 001248 811 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 888 (1114)
Q Consensus 811 ~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd 888 (1114)
-.+--..+.|||||.+|++|+ ||.+.+||.++-+.+..++.|...++.+.|+|.....+|+++.||.|++||
T Consensus 431 ------vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 431 ------VAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ------ccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 122234678999999999998 999999999999999999999999999999998788999999999999996
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-31 Score=245.30 Aligned_cols=252 Identities=18% Similarity=0.249 Sum_probs=218.4
Q ss_pred CCcceeEecc-CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeE
Q 001248 347 LPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR 425 (1114)
Q Consensus 347 ~~~~~~~~~~-h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~ 425 (1114)
+|.+-.+.+. |.++|.++.|+-||+| .+|++.|.+|++|++..|..++ .+.+|...|..
T Consensus 5 ~ptkr~~~l~~~qgaV~avryN~dGnY-~ltcGsdrtvrLWNp~rg~lik-------------------tYsghG~EVlD 64 (307)
T KOG0316|consen 5 LPTKRLSILDCAQGAVRAVRYNVDGNY-CLTCGSDRTVRLWNPLRGALIK-------------------TYSGHGHEVLD 64 (307)
T ss_pred CcchhceeecccccceEEEEEccCCCE-EEEcCCCceEEeecccccceee-------------------eecCCCceeee
Confidence 4554556665 9999999999999997 7788889999999999999887 48899999999
Q ss_pred EEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCC--Cccee
Q 001248 426 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN--GAKQY 503 (1114)
Q Consensus 426 l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~--~~~~~ 503 (1114)
++.+.|...+++|+.|+.+.+||+.+|+..+ .+.+|.+.|+.++|+.+.. ++++|+.|.++++||.++ .++++
T Consensus 65 ~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePiQ 139 (307)
T KOG0316|consen 65 AALSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPIQ 139 (307)
T ss_pred ccccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCccc
Confidence 9999999999999999999999999999887 7999999999999999988 899999999999999875 46788
Q ss_pred EeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEec
Q 001248 504 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 583 (1114)
Q Consensus 504 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~ 583 (1114)
.+......|.++.+.. ..+++|+.||+++.||++.+.....+- +. ++++++|+
T Consensus 140 ildea~D~V~Si~v~~----heIvaGS~DGtvRtydiR~G~l~sDy~--g~---------------------pit~vs~s 192 (307)
T KOG0316|consen 140 ILDEAKDGVSSIDVAE----HEIVAGSVDGTVRTYDIRKGTLSSDYF--GH---------------------PITSVSFS 192 (307)
T ss_pred hhhhhcCceeEEEecc----cEEEeeccCCcEEEEEeecceeehhhc--CC---------------------cceeEEec
Confidence 8888889999998643 579999999999999998755433222 22 45555556
Q ss_pred CCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 584 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 584 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
++++..++++-|+++++.|-.+|+.+..+++|.....-..++++.....+++|++||.+.+||+.+.
T Consensus 193 ~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 193 KDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred CCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc
Confidence 6666899999999999999999999999998877655567888888899999999999999999887
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-31 Score=299.46 Aligned_cols=289 Identities=27% Similarity=0.425 Sum_probs=245.2
Q ss_pred cccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeC
Q 001248 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d 829 (1114)
+...|.++.|+++|+.+++++.++.+++|+..... + ..... + .+|...|..++|+||
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~----------------~----~~~~~-l--~~h~~~v~~~~fs~d 214 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIK----------------S----NLLRE-L--SGHTRGVSDVAFSPD 214 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeeccccc----------------c----hhhcc-c--cccccceeeeEECCC
Confidence 46789999999999999999999999999863211 0 01111 1 249999999999999
Q ss_pred CCEEEEEe-CCeEEEEEc-CCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeE
Q 001248 830 DSYVMSAS-GGKISLFNM-MTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG 907 (1114)
Q Consensus 830 ~~~l~~~~-dg~i~iwd~-~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 907 (1114)
++++++++ |++|+|||+ ..+..++++.+|...|++++|+| +++++++|+.|++|+|||+.+++++..+.+|.+.|++
T Consensus 215 ~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~ 293 (456)
T KOG0266|consen 215 GSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISG 293 (456)
T ss_pred CcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEE
Confidence 99999999 899999999 56688999999999999999999 7799999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCeEEEEEcCCCcee
Q 001248 908 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECV 986 (1114)
Q Consensus 908 l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~i~iwd~~~~~~~ 986 (1114)
++|++|+++|++++.|+.|+|||+.++... +.....++.... .++.+.|+|++++++++ .|+.+++||+..+.++
T Consensus 294 ~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~---~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~ 369 (456)
T KOG0266|consen 294 LAFSPDGNLLVSASYDGTIRVWDLETGSKL---CLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV 369 (456)
T ss_pred EEECCCCCEEEEcCCCccEEEEECCCCcee---eeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcce
Confidence 999999999999999999999999996643 344455555433 68999999999999995 7779999999999999
Q ss_pred eeeecCCCCc---CeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeE
Q 001248 987 KQWVPRESSA---PITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEF 1063 (1114)
Q Consensus 987 ~~~~~~~h~~---~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l 1063 (1114)
..+. +|.. .+.+..++++++++++|+.|+.|++||+.++..++++. +|....+. .+.++| ..+++
T Consensus 370 ~~~~--~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~-------~h~~~~~~--~~~~~~-~~~~~ 437 (456)
T KOG0266|consen 370 GTYT--GHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLE-------GHSKAAVS--DLSSHP-TENLI 437 (456)
T ss_pred eeec--ccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhc-------CCCCCcee--ccccCC-CcCee
Confidence 9887 4443 55666778999999999999999999999999998887 43222233 788888 47889
Q ss_pred EEEe--CCCcEEEEecc
Q 001248 1064 ALGL--SDGGVHVFEPL 1078 (1114)
Q Consensus 1064 ~s~~--~Dg~v~vW~i~ 1078 (1114)
++++ .|+.+++|...
T Consensus 438 ~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 438 ASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eecCcCCCceEEEecCC
Confidence 9888 79999999864
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=266.81 Aligned_cols=232 Identities=21% Similarity=0.360 Sum_probs=203.9
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
..+.|.|+.+..+ .+++|..|++|.|||.++-+.+. .+.||++.|.|+.| |.+.|+
T Consensus 196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~-------------------~L~GHtGSVLCLqy--d~rvii 251 (499)
T KOG0281|consen 196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLK-------------------ILTGHTGSVLCLQY--DERVIV 251 (499)
T ss_pred cCCceEEEEecch---hhhcccccCceEEeccccHHHHH-------------------hhhcCCCcEEeeec--cceEEE
Confidence 4578999999643 48999999999999998877665 58999999999999 577999
Q ss_pred EEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcc---eeEeeccccCEE
Q 001248 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK---QYIFEGHEAPVY 513 (1114)
Q Consensus 437 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~h~~~v~ 513 (1114)
+|+.|.+|+|||+++|+++. ++-+|...|..+.|+. . +++|++.|.++.+||+..... .+.+.||...|+
T Consensus 252 sGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~n--g--~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN 324 (499)
T KOG0281|consen 252 SGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSN--G--YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 324 (499)
T ss_pred ecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeC--C--EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence 99999999999999999887 7889999999999984 3 799999999999999987653 357789999999
Q ss_pred EEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEe
Q 001248 514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 593 (1114)
Q Consensus 514 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 593 (1114)
.+.|.. +++++++.|++|++|++.+.+.+.++.+|...|.++.+. ++++++|+
T Consensus 325 vVdfd~----kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr-----------------------~rlvVSGS 377 (499)
T KOG0281|consen 325 VVDFDD----KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR-----------------------DRLVVSGS 377 (499)
T ss_pred eecccc----ceEEEecCCceEEEEeccceeeehhhhcccccceehhcc-----------------------CeEEEecC
Confidence 998632 699999999999999999999999999998877776552 34789999
Q ss_pred CCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 594 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 594 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
.|.+|++||+..|.++..+.+|.. -|.++.| |.+.+++|..||+|++||+..+
T Consensus 378 SDntIRlwdi~~G~cLRvLeGHEe--LvRciRF--d~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 378 SDNTIRLWDIECGACLRVLEGHEE--LVRCIRF--DNKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred CCceEEEEeccccHHHHHHhchHH--hhhheee--cCceeeeccccceEEEEecccc
Confidence 999999999999999999998754 6899999 4678999999999999998776
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.1e-30 Score=295.37 Aligned_cols=256 Identities=21% Similarity=0.375 Sum_probs=213.5
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcc--eeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCe
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE--RLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 434 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 434 (1114)
|...|.|+.|||+|++ +++++.|+.+++|+..+++ ... .+.+|...|.+++|+|||++
T Consensus 158 ~~~sv~~~~fs~~g~~-l~~~~~~~~i~~~~~~~~~~~~~~-------------------~l~~h~~~v~~~~fs~d~~~ 217 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRA-LAAASSDGLIRIWKLEGIKSNLLR-------------------ELSGHTRGVSDVAFSPDGSY 217 (456)
T ss_pred ccCceEEEEEcCCCCe-EEEccCCCcEEEeecccccchhhc-------------------cccccccceeeeEECCCCcE
Confidence 4889999999999996 9999999999999997665 222 35899999999999999999
Q ss_pred EEEEeCCCeEEEEEc-cCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEE
Q 001248 435 FGVAYSRHIVQIYSY-HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 513 (1114)
Q Consensus 435 las~~~dg~i~iwd~-~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 513 (1114)
+++++.|++|+|||+ ..+..++ ++.+|...|++++|+|+|+ ++++|+.|++|+|||+++++++..+.+|.+.|+
T Consensus 218 l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 218 LLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred EEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 999999999999999 4445555 7889999999999999996 899999999999999999999999999999999
Q ss_pred EEeeccCCCceEEEEEecCCeEEEEEcCCCCC--eeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEE
Q 001248 514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 591 (1114)
Q Consensus 514 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~ 591 (1114)
+++|. +++.+|++++.|+.|++||+.++.. ...+..+... . .+..+.|+|++.++++
T Consensus 293 ~~~f~--~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~------------------~-~~~~~~fsp~~~~ll~ 351 (456)
T KOG0266|consen 293 GLAFS--PDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENS------------------A-PVTSVQFSPNGKYLLS 351 (456)
T ss_pred EEEEC--CCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCC------------------C-ceeEEEECCCCcEEEE
Confidence 99974 5668999999999999999998763 2333322221 0 3445555556668999
Q ss_pred EeCCCeEEEEECCCcceEEEeccCCCC-CCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccc
Q 001248 592 AGDDFSIKFWDMDSVQLLTSIDADGGL-PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN 659 (1114)
Q Consensus 592 ~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 659 (1114)
++.|+.+++||+..+.....+..+... ..+.+...++.+.++++|+.|+.|.+|+..++ ..+..+.+
T Consensus 352 ~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~-~~~~~l~~ 419 (456)
T KOG0266|consen 352 ASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG-GILQRLEG 419 (456)
T ss_pred ecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc-chhhhhcC
Confidence 999999999999999999998877653 23445556789999999999999999999886 44444443
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-30 Score=238.50 Aligned_cols=213 Identities=21% Similarity=0.336 Sum_probs=185.8
Q ss_pred ccccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEE
Q 001248 414 ALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 493 (1114)
Q Consensus 414 ~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~i 493 (1114)
.++..|+++|.++.|+-||+|.++++.|++|++|+...|..++ +..+|...|..++.+.|+. .+++|+.|+.+.+
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~v 85 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQV 85 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEEE
Confidence 3678999999999999999999999999999999999998887 8999999999999999998 6999999999999
Q ss_pred EeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCC--CCeeeecCCCCeeEEEEEecCCCeEEee
Q 001248 494 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL--GSRVDYEAPGRWCTTMAYSADGTRTYQG 571 (1114)
Q Consensus 494 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~g~~~~~~ 571 (1114)
||+.+|+.++.+.+|.+.|+.+.|+.. ...+++|+.|.++++||.++. ++++.+......|.++.+..
T Consensus 86 wDV~TGkv~Rr~rgH~aqVNtV~fNee--sSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~-------- 155 (307)
T KOG0316|consen 86 WDVNTGKVDRRFRGHLAQVNTVRFNEE--SSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE-------- 155 (307)
T ss_pred EEcccCeeeeecccccceeeEEEecCc--ceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc--------
Confidence 999999999999999999999998654 479999999999999999864 44555555566666665543
Q ss_pred ecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCc
Q 001248 572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI 651 (1114)
Q Consensus 572 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~ 651 (1114)
..+++|+.||+++.||++.|+.....-++ +|++++|++|++..++++-|+++++.|-.+|
T Consensus 156 ---------------heIvaGS~DGtvRtydiR~G~l~sDy~g~----pit~vs~s~d~nc~La~~l~stlrLlDk~tG- 215 (307)
T KOG0316|consen 156 ---------------HEIVAGSVDGTVRTYDIRKGTLSSDYFGH----PITSVSFSKDGNCSLASSLDSTLRLLDKETG- 215 (307)
T ss_pred ---------------cEEEeeccCCcEEEEEeecceeehhhcCC----cceeEEecCCCCEEEEeeccceeeecccchh-
Confidence 35999999999999999999877665533 7999999999999999999999999999998
Q ss_pred cceeeccccc
Q 001248 652 RLLRTFENLA 661 (1114)
Q Consensus 652 ~~~~~~~~~~ 661 (1114)
++++.+.+|.
T Consensus 216 klL~sYkGhk 225 (307)
T KOG0316|consen 216 KLLKSYKGHK 225 (307)
T ss_pred HHHHHhcccc
Confidence 6666665543
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-31 Score=269.90 Aligned_cols=291 Identities=19% Similarity=0.366 Sum_probs=244.9
Q ss_pred CcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCC-CCCeeeecCCCCeeEEEEEecCCCeEEeeecccce
Q 001248 499 GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 577 (1114)
Q Consensus 499 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v 577 (1114)
.+.+.++.||...|+++.|.+. .+.+|++++.|+.|++|++.. .+++.++.+|..+|..++|+.+|.
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~-~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~----------- 271 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPK-KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGT----------- 271 (503)
T ss_pred HhheeeccCCccccchhhhccc-eeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCC-----------
Confidence 3557789999999999999764 458999999999999999987 677778899998888888888876
Q ss_pred eEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCC-CEEEEEeCCCcEEEEEccCCccceee
Q 001248 578 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG-CLLAVSTNDNGIKILATSDGIRLLRT 656 (1114)
Q Consensus 578 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~~~~~dg~i~iwd~~~~~~~~~~ 656 (1114)
.+++++.|+.|++||.++|+++..+.... .+.|+.|.||+ +.+++|+.|+.|+.||++++ +.++.
T Consensus 272 ----------~fLS~sfD~~lKlwDtETG~~~~~f~~~~---~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~-kvvqe 337 (503)
T KOG0282|consen 272 ----------SFLSASFDRFLKLWDTETGQVLSRFHLDK---VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG-KVVQE 337 (503)
T ss_pred ----------eeeeeecceeeeeeccccceEEEEEecCC---CceeeecCCCCCcEEEEecCCCcEEEEeccch-HHHHH
Confidence 69999999999999999999999997543 47899999988 89999999999999999998 44433
Q ss_pred ccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCC
Q 001248 657 FENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSE 736 (1114)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~ 736 (1114)
+.
T Consensus 338 Yd------------------------------------------------------------------------------ 339 (503)
T KOG0282|consen 338 YD------------------------------------------------------------------------------ 339 (503)
T ss_pred HH------------------------------------------------------------------------------
Confidence 32
Q ss_pred CccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCC
Q 001248 737 PNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSN 816 (1114)
Q Consensus 737 ~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~ 816 (1114)
.|.+.|..+.|-++|++++++++|+.++||++... ..+..... .
T Consensus 340 ------------~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~----------------------v~ik~i~~--~ 383 (503)
T KOG0282|consen 340 ------------RHLGAILDITFVDEGRRFISSSDDKSVRIWENRIP----------------------VPIKNIAD--P 383 (503)
T ss_pred ------------hhhhheeeeEEccCCceEeeeccCccEEEEEcCCC----------------------ccchhhcc--h
Confidence 16678899999999999999999999999987632 11211111 1
Q ss_pred CCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCC---ccccccCCCC--CCeEEEEEecCCCcEEEEEeCCCcEEEEEcc
Q 001248 817 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTF---KTMATFMPPP--PAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 890 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~---~~~~~~~~~~--~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~ 890 (1114)
+.....++..+|++++++.-+ |+.|.+|.+... .....+.+|. +.-..+.||| ||.+|++|+.||.+.+||..
T Consensus 384 ~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp-DG~~l~SGdsdG~v~~wdwk 462 (503)
T KOG0282|consen 384 EMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP-DGRTLCSGDSDGKVNFWDWK 462 (503)
T ss_pred hhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC-CCCeEEeecCCccEEEeech
Confidence 445577899999999999999 999999987532 2334567774 4577899999 99999999999999999999
Q ss_pred cceEEEeecccccCeeEEEEcCC-CCEEEEEeCCCcEEEEe
Q 001248 891 VDEVKSKLKGHSKRITGLAFSHA-LNVLVSSGADSQLCVWS 930 (1114)
Q Consensus 891 ~~~~~~~l~~h~~~V~~l~~s~d-~~~l~s~s~D~~v~iwd 930 (1114)
+-+++..+++|...+..+.|+|. ...+|+|+.||.|++|+
T Consensus 463 t~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 463 TTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred hhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 99999999999999999999996 46799999999999996
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.8e-29 Score=259.65 Aligned_cols=625 Identities=14% Similarity=0.184 Sum_probs=342.6
Q ss_pred eeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC
Q 001248 351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1114)
Q Consensus 351 ~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1114)
+-.+-.|.+.|+.+.|||-...||||++.|..|+||.+..|-... ..-....+.+..-.|.|+.|+|
T Consensus 72 i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~-------------LSape~~~g~~~~~vE~l~fHp 138 (1012)
T KOG1445|consen 72 IGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQK-------------LSAPEIDVGGGNVIVECLRFHP 138 (1012)
T ss_pred cceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccc-------------cCCcceeecCCceEEEEeeccc
Confidence 334445999999999999877799999999999999998543221 1112223455556889999999
Q ss_pred CCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCC-CCcceeEeeccc
Q 001248 431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQYIFEGHE 509 (1114)
Q Consensus 431 dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~h~ 509 (1114)
...-|...+..|+++|||+.+++... ++.+|...|.++.|+.||+ ++++++.|+.|+|||.+ .++.+++..+|.
T Consensus 139 TaDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~H~ 213 (1012)
T KOG1445|consen 139 TADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEGHG 213 (1012)
T ss_pred CcCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCccccccccc
Confidence 66666666678999999999988665 7999999999999999999 89999999999999987 467788888887
Q ss_pred cCE-EEEeeccCCCceEEEEEecC----CeEEEEEcCCCCCe-eeecCC-CCeeEEEEEecCCCeE-EeeecccceeEEE
Q 001248 510 APV-YSVCPHHKENIQFIFSTALD----GKIKAWLYDNLGSR-VDYEAP-GRWCTTMAYSADGTRT-YQGFRKRSLGVVQ 581 (1114)
Q Consensus 510 ~~v-~~~~~~~~~~~~~l~s~~~d----~~i~~wd~~~~~~~-~~~~~~-~~~v~~~~~s~~g~~~-~~~~~~~~v~~~~ 581 (1114)
+.- .-+.| .++-..|++.+.+ ..|++||.+..... .++... ...|.--.+.||.+.+ +.|.....+.++.
T Consensus 214 ~~rdsRv~w--~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE 291 (1012)
T KOG1445|consen 214 GMRDSRVLW--AGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLE 291 (1012)
T ss_pred cchhheeee--ccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEE
Confidence 542 22344 3333466666654 56899998865432 222221 1223333455665533 2333344444444
Q ss_pred ecCCCCEEEEE--------------eCCCeE--------EEEECCCcceEEE--------e-ccC---------------
Q 001248 582 FDTTKNRFLAA--------------GDDFSI--------KFWDMDSVQLLTS--------I-DAD--------------- 615 (1114)
Q Consensus 582 ~~~~~~~l~~~--------------~~dg~i--------~iwd~~~~~~~~~--------~-~~~--------------- 615 (1114)
+.+...+|.-+ .-...+ +++.+.....+.. + ..|
T Consensus 292 ~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~~ 371 (1012)
T KOG1445|consen 292 MQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGCT 371 (1012)
T ss_pred ecCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCccCcC
Confidence 43332221110 000011 1111111100000 0 000
Q ss_pred ------CCCCCcCeEEEcCCCC-------------EEE-EEeCCCcEEEEEc-----------------cC--------C
Q 001248 616 ------GGLPASPRIRFNKDGC-------------LLA-VSTNDNGIKILAT-----------------SD--------G 650 (1114)
Q Consensus 616 ------~~~~~v~~~~~s~d~~-------------~l~-~~~~dg~i~iwd~-----------------~~--------~ 650 (1114)
+....+..++..|..+ ..+ +++ .+.+.-. .+ .
T Consensus 372 ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~s---f~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~~ 448 (1012)
T KOG1445|consen 372 AGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPS---FVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVPK 448 (1012)
T ss_pred ccceecCccccccccccCchhccCCCCCCCCCCCcccccCCC---CccccCCCCCCCccccccccccCCCccccCCCcCc
Confidence 0000111222221000 000 000 0000000 00 0
Q ss_pred ccceeec---------------------cccccccccCCCCCCCCccchhhhhhh-----hccccccccccccccccCCC
Q 001248 651 IRLLRTF---------------------ENLAYDASRTSENSKPTISPISAAAAA-----AATSAGLADRAASMVSIPGM 704 (1114)
Q Consensus 651 ~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 704 (1114)
+...+.+ ++....+..+...+.....+.+..... +.+.+... +..+-..-.++
T Consensus 449 ~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~-ksvPe~~~~~~ 527 (1012)
T KOG1445|consen 449 KEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFG-KSVPEQPPVNF 527 (1012)
T ss_pred chhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCcccc-ccCCCCCCccc
Confidence 0000000 000010000000000000000000000 00000000 00000000000
Q ss_pred CCCccccCCCcccccccC------CCceeEEEeccCCCCcccccc-ccCccccccceEEEEEccCcceeee--cccCceE
Q 001248 705 NGDVRSLADVKPRITEES------NDKSKVWKLTELSEPNQCRSL-RLPENLRATKISRLIFTNSGNAILA--LASNAIH 775 (1114)
Q Consensus 705 ~~~~~~~~~~~~l~~~~~------d~~i~iw~~~~~~~~~~~~~~-~~~~~~~~~~i~~l~~s~~~~~l~~--~~~dg~i 775 (1114)
.... ........+.+. =|.+.-|.--.+....+-..+ .+.+-...-+-.+--|+.+..++++ .+..|.|
T Consensus 528 g~~~--sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~rvAVPL~g~gG~i 605 (1012)
T KOG1445|consen 528 GKPI--SATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCANNKRVAVPLAGSGGVI 605 (1012)
T ss_pred CCCc--cccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCceeeccceEEEEecCCCceE
Confidence 0000 000000000000 011111111111100000000 0000000000011123334444443 5567999
Q ss_pred EEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEee-CCCEEEEEe-CCeEEEEEcCCCcc--
Q 001248 776 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSYVMSAS-GGKISLFNMMTFKT-- 851 (1114)
Q Consensus 776 ~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~-d~~~l~~~~-dg~i~iwd~~~~~~-- 851 (1114)
-||+++.....+++... +......|+.+.|.| |...||+++ ||.|++|.+..+..
T Consensus 606 ai~el~~PGrLPDgv~p---------------------~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e 664 (1012)
T KOG1445|consen 606 AIYELNEPGRLPDGVMP---------------------GLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE 664 (1012)
T ss_pred EEEEcCCCCCCCccccc---------------------ccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc
Confidence 99999876665555432 222566788899998 677888888 89999999875432
Q ss_pred -----ccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcE
Q 001248 852 -----MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQL 926 (1114)
Q Consensus 852 -----~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v 926 (1114)
-..+..|...|+++.|+|-..+.||+++.|-+|++||+.+++....+.+|.+.|.+++|||||+.+|+.+.||+|
T Consensus 665 ~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~ 744 (1012)
T KOG1445|consen 665 NEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTL 744 (1012)
T ss_pred ccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceE
Confidence 345678999999999999778899999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeC----CeEEEEEcCCCce--eeeeecCCCCcCee
Q 001248 927 CVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHE----TQLAIFETTKLEC--VKQWVPRESSAPIT 999 (1114)
Q Consensus 927 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d----~~i~iwd~~~~~~--~~~~~~~~h~~~v~ 999 (1114)
++|+-.+++.. +....+ +....--.+.|.-||+++++ +.| .+|.+||..+... +.+...+. .-.+.
T Consensus 745 rVy~Prs~e~p----v~Eg~g--pvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDv-aps~L 817 (1012)
T KOG1445|consen 745 RVYEPRSREQP----VYEGKG--PVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDV-APSPL 817 (1012)
T ss_pred EEeCCCCCCCc----cccCCC--CccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecc-cCccc
Confidence 99999886532 222222 21133467899999999988 544 5799999876542 22221111 11122
Q ss_pred EEEECCCCCE-EEEEEcCCeEEEEEcCCCee
Q 001248 1000 HATFSCDSQL-VYACFLDATVCVFSAANLKL 1029 (1114)
Q Consensus 1000 ~l~~s~dg~~-l~s~s~Dg~I~vwd~~~~~~ 1029 (1114)
--.+.+|... +++|-.|..|..|.+...+.
T Consensus 818 vP~YD~Ds~~lfltGKGD~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 818 VPHYDYDSNVLFLTGKGDRFVNMYEVIYESP 848 (1012)
T ss_pred cccccCCCceEEEecCCCceEEEEEecCCCc
Confidence 2234556665 56788899999999866554
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=244.17 Aligned_cols=289 Identities=17% Similarity=0.281 Sum_probs=243.4
Q ss_pred cccCCCCCeeEEEEcC---CCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCE
Q 001248 415 LVKDPGVSVNRVIWSP---DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 491 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~sp---dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i 491 (1114)
+..||+.+|..++||| +|-+|++++.|+.-.+-+-++|.-+. ++.||.+.|+......+.. ..++++.|-+.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig---tfeghkgavw~~~l~~na~--~aasaaadfta 83 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG---TFEGHKGAVWSATLNKNAT--RAASAAADFTA 83 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE---eeeccCcceeeeecCchhh--hhhhhcccchh
Confidence 4689999999999997 89999999999999888888988777 8999999999999988877 68999999999
Q ss_pred EEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEee
Q 001248 492 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG 571 (1114)
Q Consensus 492 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~ 571 (1114)
++||.-+|..+.+|. |..-|.+++|+. |.++|++|+.++.++++|++..+.
T Consensus 84 kvw~a~tgdelhsf~-hkhivk~~af~~--ds~~lltgg~ekllrvfdln~p~A-------------------------- 134 (334)
T KOG0278|consen 84 KVWDAVTGDELHSFE-HKHIVKAVAFSQ--DSNYLLTGGQEKLLRVFDLNRPKA-------------------------- 134 (334)
T ss_pred hhhhhhhhhhhhhhh-hhheeeeEEecc--cchhhhccchHHHhhhhhccCCCC--------------------------
Confidence 999999999999997 888999999754 446788888888777777754321
Q ss_pred ecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCc
Q 001248 572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI 651 (1114)
Q Consensus 572 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~ 651 (1114)
+...+. ++...|..+.|....+.+++.+.|++||+||.+++.
T Consensus 135 ------------------------------------pp~E~~--ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt 176 (334)
T KOG0278|consen 135 ------------------------------------PPKEIS--GHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGT 176 (334)
T ss_pred ------------------------------------Cchhhc--CCCCcceeEEEeccCceEEeeccCCceEEEEeccCc
Confidence 112222 234467888888888888888999999999998882
Q ss_pred cceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEe
Q 001248 652 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL 731 (1114)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~ 731 (1114)
.++.+
T Consensus 177 -~v~sL-------------------------------------------------------------------------- 181 (334)
T KOG0278|consen 177 -EVQSL-------------------------------------------------------------------------- 181 (334)
T ss_pred -EEEEE--------------------------------------------------------------------------
Confidence 22111
Q ss_pred ccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCcccccc
Q 001248 732 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND 811 (1114)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~ 811 (1114)
.
T Consensus 182 --------------------------~----------------------------------------------------- 182 (334)
T KOG0278|consen 182 --------------------------E----------------------------------------------------- 182 (334)
T ss_pred --------------------------e-----------------------------------------------------
Confidence 0
Q ss_pred CCCCCCCCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc
Q 001248 812 VTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 891 (1114)
Q Consensus 812 ~~~~~~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~ 891 (1114)
....|+++.+++||++|.++..+.|.+||..+...++.+. -+..|.+..++| +..++++|++|+.++.||+.+
T Consensus 183 -----~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P-~k~~fVaGged~~~~kfDy~T 255 (334)
T KOG0278|consen 183 -----FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYK-MPCNVESASLHP-KKEFFVAGGEDFKVYKFDYNT 255 (334)
T ss_pred -----cCCCCcceeeccCCCEEEEecCceeEEeccccccceeecc-CccccccccccC-CCceEEecCcceEEEEEeccC
Confidence 3456788889999999999989999999999999888876 345699999999 778999999999999999999
Q ss_pred ceEEEee-cccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc
Q 001248 892 DEVKSKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEK 936 (1114)
Q Consensus 892 ~~~~~~l-~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~ 936 (1114)
|+.+..+ ++|.++|-||.|+|||...|+||+||+|++|.+..++.
T Consensus 256 geEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 256 GEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred CceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 9998886 99999999999999999999999999999999876543
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-28 Score=302.46 Aligned_cols=310 Identities=15% Similarity=0.219 Sum_probs=222.7
Q ss_pred CCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCC----cee
Q 001248 380 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG----DEV 455 (1114)
Q Consensus 380 dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~----~~~ 455 (1114)
+|.+++|+..+.+..... ....+..|.+.|.+++|+|+|++||+|+.|+.|+|||.... ...
T Consensus 457 ~gl~~~~~~~~~~~~~~~--------------~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~ 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADL--------------KQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI 522 (793)
T ss_pred hhhhhhhcccceEEEEee--------------ccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc
Confidence 677888888765443210 11124569999999999999999999999999999997642 111
Q ss_pred e-eeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCe
Q 001248 456 R-QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGK 534 (1114)
Q Consensus 456 ~-~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~ 534 (1114)
. ....+. +...|.+++|++.... +|++++.|++|++||+.+++.+..+.+|.+.|++++|++. ++.+|++|+.|++
T Consensus 523 ~~~~~~~~-~~~~v~~l~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~ 599 (793)
T PLN00181 523 HYPVVELA-SRSKLSGICWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGS 599 (793)
T ss_pred ccceEEec-ccCceeeEEeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCE
Confidence 1 112233 3467999999986443 7999999999999999999999999999999999998753 3457777777777
Q ss_pred EEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEecc
Q 001248 535 IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA 614 (1114)
Q Consensus 535 i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 614 (1114)
|++||+++ +..+..+..
T Consensus 600 v~iWd~~~---------------------------------------------------------------~~~~~~~~~ 616 (793)
T PLN00181 600 VKLWSINQ---------------------------------------------------------------GVSIGTIKT 616 (793)
T ss_pred EEEEECCC---------------------------------------------------------------CcEEEEEec
Confidence 77776643 222223322
Q ss_pred CCCCCCcCeEEEc-CCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhcccccccc
Q 001248 615 DGGLPASPRIRFN-KDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLAD 693 (1114)
Q Consensus 615 ~~~~~~v~~~~~s-~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1114)
+ ..+.++.|+ ++|.+|++|+.||.|++||+.+.......+.
T Consensus 617 ~---~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~----------------------------------- 658 (793)
T PLN00181 617 K---ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI----------------------------------- 658 (793)
T ss_pred C---CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec-----------------------------------
Confidence 2 236778884 5799999999999999999865421111110
Q ss_pred ccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCc
Q 001248 694 RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNA 773 (1114)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg 773 (1114)
+
T Consensus 659 -------------------------------------------------------~------------------------ 659 (793)
T PLN00181 659 -------------------------------------------------------G------------------------ 659 (793)
T ss_pred -------------------------------------------------------C------------------------
Confidence 1
Q ss_pred eEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCC----
Q 001248 774 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT---- 848 (1114)
Q Consensus 774 ~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~---- 848 (1114)
|...|.++.|. ++.+|++++ |++|++||+..
T Consensus 660 -------------------------------------------h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~ 695 (793)
T PLN00181 660 -------------------------------------------HSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISG 695 (793)
T ss_pred -------------------------------------------CCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccc
Confidence 33344444443 344455554 55555555542
Q ss_pred --CccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEe-------------ecccccCeeEEEEcCC
Q 001248 849 --FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK-------------LKGHSKRITGLAFSHA 913 (1114)
Q Consensus 849 --~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~-------------l~~h~~~V~~l~~s~d 913 (1114)
...+..+.+|...+.+++|+| ++.+||+|+.||.|++|+......+.. ...|...|.+++|+++
T Consensus 696 ~~~~~l~~~~gh~~~i~~v~~s~-~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~ 774 (793)
T PLN00181 696 INETPLHSFMGHTNVKNFVGLSV-SDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQ 774 (793)
T ss_pred cCCcceEEEcCCCCCeeEEEEcC-CCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCC
Confidence 245667788999999999999 889999999999999999765433221 2335667999999999
Q ss_pred CCEEEEEeCCCcEEEEeC
Q 001248 914 LNVLVSSGADSQLCVWSS 931 (1114)
Q Consensus 914 ~~~l~s~s~D~~v~iwd~ 931 (1114)
+..|++|+.||+|+||++
T Consensus 775 ~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 775 SSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCeEEEecCCCcEEEEec
Confidence 999999999999999986
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-31 Score=256.57 Aligned_cols=234 Identities=17% Similarity=0.285 Sum_probs=208.0
Q ss_pred CCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEE
Q 001248 817 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 895 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~ 895 (1114)
....|+|+.+ |...+++|. |++|+|||..+..+.+.+.+|.+.|.|+.|. .+.|++|++|.+|+|||+++|+++
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd---~rviisGSSDsTvrvWDv~tge~l 270 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD---ERVIVSGSSDSTVRVWDVNTGEPL 270 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc---ceEEEecCCCceEEEEeccCCchh
Confidence 4567888887 667899998 9999999999999999999999999999995 569999999999999999999999
Q ss_pred EeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCe
Q 001248 896 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQ 974 (1114)
Q Consensus 896 ~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~ 974 (1114)
.++-+|...|..+.|+ +.++++++.|.++.+||+.+.. ...+...+.||.. +|..+.|+. +|+++ ++|.+
T Consensus 271 ~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps--~it~rrVLvGHrA---aVNvVdfd~--kyIVsASgDRT 341 (499)
T KOG0281|consen 271 NTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPT--DITLRRVLVGHRA---AVNVVDFDD--KYIVSASGDRT 341 (499)
T ss_pred hHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCch--HHHHHHHHhhhhh---heeeecccc--ceEEEecCCce
Confidence 9999999999999997 5699999999999999999854 3456677778874 788888854 58888 69999
Q ss_pred EEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEE
Q 001248 975 LAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIA 1054 (1114)
Q Consensus 975 i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 1054 (1114)
|++|++.++++++++. +|...|.|+.+ .|+++++|+.|.+|++||+..|.++..++ ||+.- |. ++.
T Consensus 342 ikvW~~st~efvRtl~--gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLe-------GHEeL-vR--ciR 407 (499)
T KOG0281|consen 342 IKVWSTSTCEFVRTLN--GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE-------GHEEL-VR--CIR 407 (499)
T ss_pred EEEEeccceeeehhhh--cccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHh-------chHHh-hh--hee
Confidence 9999999999999986 89999999987 79999999999999999999999998888 55444 55 788
Q ss_pred ecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1055 AHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1055 ~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
|. .+.+++|..||+|+|||+.++.
T Consensus 408 Fd---~krIVSGaYDGkikvWdl~aal 431 (499)
T KOG0281|consen 408 FD---NKRIVSGAYDGKIKVWDLQAAL 431 (499)
T ss_pred ec---CceeeeccccceEEEEeccccc
Confidence 85 5789999999999999999987
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=238.25 Aligned_cols=294 Identities=18% Similarity=0.287 Sum_probs=230.2
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw 494 (1114)
.++||+.+++.+.++.+|.+|.+++.|.++.||--.+|+.+. ++.||.+.|+|++..-+.+ +++||+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence 588999999999999999999999999999999998998777 8999999999999999999 79999999999999
Q ss_pred eCCCCcceeEeeccccCEEEEeeccCCCceEEEEEec-----CCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEE
Q 001248 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-----DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY 569 (1114)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-----d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~ 569 (1114)
|+++|+++.+++ ...+|..+.|++.. ++++.... .+.|.++|++....
T Consensus 80 Dv~tGk~la~~k-~~~~Vk~~~F~~~g--n~~l~~tD~~mg~~~~v~~fdi~~~~~------------------------ 132 (327)
T KOG0643|consen 80 DVETGKQLATWK-TNSPVKRVDFSFGG--NLILASTDKQMGYTCFVSVFDIRDDSS------------------------ 132 (327)
T ss_pred EcCCCcEEEEee-cCCeeEEEeeccCC--cEEEEEehhhcCcceEEEEEEccCChh------------------------
Confidence 999999999988 56788888876654 44444332 23344444432100
Q ss_pred eeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccC
Q 001248 570 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 649 (1114)
Q Consensus 570 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~ 649 (1114)
+....++...+..+. ..++.+-|+|-+++|++|..||.|.+||.++
T Consensus 133 --------------------------------~~~s~ep~~kI~t~~--skit~a~Wg~l~~~ii~Ghe~G~is~~da~~ 178 (327)
T KOG0643|consen 133 --------------------------------DIDSEEPYLKIPTPD--SKITSALWGPLGETIIAGHEDGSISIYDART 178 (327)
T ss_pred --------------------------------hhcccCceEEecCCc--cceeeeeecccCCEEEEecCCCcEEEEEccc
Confidence 111334455554443 4688999999999999999999999999988
Q ss_pred CccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEE
Q 001248 650 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW 729 (1114)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw 729 (1114)
+++.+...+
T Consensus 179 g~~~v~s~~----------------------------------------------------------------------- 187 (327)
T KOG0643|consen 179 GKELVDSDE----------------------------------------------------------------------- 187 (327)
T ss_pred Cceeeechh-----------------------------------------------------------------------
Confidence 843322110
Q ss_pred EeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCcccc
Q 001248 730 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 809 (1114)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~ 809 (1114)
T Consensus 188 -------------------------------------------------------------------------------- 187 (327)
T KOG0643|consen 188 -------------------------------------------------------------------------------- 187 (327)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEE-eCCC-----
Q 001248 810 NDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIG-MDDS----- 882 (1114)
Q Consensus 810 ~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g-~~dg----- 882 (1114)
.|...|+.+.+++|..++++++ |.+-++||..+.++++++. ...+|.+.+++| -..+++.| +.+.
T Consensus 188 ------~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP-~~d~VilgGGqeA~dVTT 259 (327)
T KOG0643|consen 188 ------EHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISP-LLDHVILGGGQEAMDVTT 259 (327)
T ss_pred ------hhccccccccccCCcceEEecccCccceeeeccceeeEEEee-ecccccceeccc-ccceEEecCCceeeeeee
Confidence 1666778888888888999998 8899999999999888887 456899999999 44444444 3331
Q ss_pred --------cEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001248 883 --------SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 933 (1114)
Q Consensus 883 --------~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~ 933 (1114)
.-+.|++-..+.+..+++|-++|++|+|+|||+..+||++||.|++.-.+.
T Consensus 260 T~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 260 TSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred ecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 123344444456778899999999999999999999999999999987665
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-28 Score=266.09 Aligned_cols=285 Identities=28% Similarity=0.473 Sum_probs=239.8
Q ss_pred eeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEE
Q 001248 460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 539 (1114)
Q Consensus 460 ~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd 539 (1114)
++.+|..+|.+++|+|+++ ++++++.|+.|++||+.+++....+..|...+..+.|.+. ++++++++.|+.|++||
T Consensus 4 ~~~~h~~~i~~~~~~~~~~--~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~~~~i~i~~ 79 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGK--LLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASAD--GTYLASGSSDKTIRLWD 79 (289)
T ss_pred HhcccCCCEEEEEEcCCCC--EEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCC--CCEEEEEcCCCeEEEEE
Confidence 5678999999999999998 7899999999999999999888899999999988887654 47899999999999999
Q ss_pred cCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCC
Q 001248 540 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP 619 (1114)
Q Consensus 540 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 619 (1114)
+...+....+..+...+.++.+++++ +++++++.++.|++||+.+++....+..+ ..
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~~---------------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~ 136 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPDG---------------------RILSSSSRDKTIKVWDVETGKCLTTLRGH--TD 136 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCCC---------------------CEEEEecCCCeEEEEECCCcEEEEEeccC--CC
Confidence 99876666666555556666655554 46777777999999999988888888754 34
Q ss_pred CcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhcccccccccccccc
Q 001248 620 ASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMV 699 (1114)
Q Consensus 620 ~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (1114)
.+.++.|+|++.++++++.++.|++||+.++. ....+.
T Consensus 137 ~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~-~~~~~~----------------------------------------- 174 (289)
T cd00200 137 WVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK-CVATLT----------------------------------------- 174 (289)
T ss_pred cEEEEEEcCcCCEEEEEcCCCcEEEEEccccc-cceeEe-----------------------------------------
Confidence 78999999999999988889999999976441 110000
Q ss_pred ccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEe
Q 001248 700 SIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWK 779 (1114)
Q Consensus 700 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~ 779 (1114)
T Consensus 175 -------------------------------------------------------------------------------- 174 (289)
T cd00200 175 -------------------------------------------------------------------------------- 174 (289)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCC
Q 001248 780 WQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP 858 (1114)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~ 858 (1114)
.|...+.+++++++++.+++++ ++.|++||+.+++.+..+..|
T Consensus 175 ------------------------------------~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~ 218 (289)
T cd00200 175 ------------------------------------GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGH 218 (289)
T ss_pred ------------------------------------cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhc
Confidence 0445677788888887777777 889999999888888888788
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 001248 859 PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930 (1114)
Q Consensus 859 ~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd 930 (1114)
...+.+++|+| ++.++++++.||.|++||+.+++.+..+.+|...|.+++|++++++|++++.|+.+++|+
T Consensus 219 ~~~i~~~~~~~-~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 219 ENGVNSVAFSP-DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCceEEEEEcC-CCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 88999999999 788999888899999999999999999999999999999999999999999999999996
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-30 Score=247.37 Aligned_cols=291 Identities=19% Similarity=0.291 Sum_probs=236.5
Q ss_pred cccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeC
Q 001248 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d 829 (1114)
....+.+..|+|||+++++++.||.|.||+..+++...+-+..+ ....+ . ++..|.|+.||.|
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQA---------qd~fM-M-------md~aVlci~FSRD 274 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQA---------QDNFM-M-------MDDAVLCISFSRD 274 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhh---------hccee-e-------cccceEEEeeccc
Confidence 45667899999999999999999999999877554332222111 11111 1 6789999999999
Q ss_pred CCEEEEEe-CCeEEEEEcCCCccccccC-CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeE
Q 001248 830 DSYVMSAS-GGKISLFNMMTFKTMATFM-PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG 907 (1114)
Q Consensus 830 ~~~l~~~~-dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 907 (1114)
..++|+|+ ||.|++|.+.+|.+++.+. .|...|+|+.||. |+..+.+++.|.+++|.-+.+|+++..++||++.|+.
T Consensus 275 sEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~ 353 (508)
T KOG0275|consen 275 SEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNE 353 (508)
T ss_pred HHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccc
Confidence 99999999 9999999999999999986 8999999999999 8888999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccC-CcEEEE-EeCCeEEEEEcCCCce
Q 001248 908 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-QIHFLV-VHETQLAIFETTKLEC 985 (1114)
Q Consensus 908 l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspd-g~~l~~-~~d~~i~iwd~~~~~~ 985 (1114)
..|++||..+++++.||+|++|+..+.++ +..+.... ...+|..+..-|. -..+++ -...++.|-++. |+.
T Consensus 354 a~ft~dG~~iisaSsDgtvkvW~~KtteC-----~~Tfk~~~-~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQv 426 (508)
T KOG0275|consen 354 ATFTDDGHHIISASSDGTVKVWHGKTTEC-----LSTFKPLG-TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQV 426 (508)
T ss_pred eEEcCCCCeEEEecCCccEEEecCcchhh-----hhhccCCC-CcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceE
Confidence 99999999999999999999999998554 33333221 1235667666663 444555 467788888885 777
Q ss_pred eeeeecCC-CCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEE
Q 001248 986 VKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA 1064 (1114)
Q Consensus 986 ~~~~~~~~-h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~ 1064 (1114)
++++.... ..+...+.+.||.|.++++.+.|+.++.|.+.+|++...+..+... ++.++-+| ..+.|+
T Consensus 427 VrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkd----------vIGl~HHP-HqNllA 495 (508)
T KOG0275|consen 427 VRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKD----------VIGLTHHP-HQNLLA 495 (508)
T ss_pred EeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccccc----------ccccccCc-ccchhh
Confidence 78776422 2556778889999999999999999999999999999888733322 33588888 468999
Q ss_pred EEeCCCcEEEEe
Q 001248 1065 LGLSDGGVHVFE 1076 (1114)
Q Consensus 1065 s~~~Dg~v~vW~ 1076 (1114)
+-++||.+++|.
T Consensus 496 sYsEDgllKLWk 507 (508)
T KOG0275|consen 496 SYSEDGLLKLWK 507 (508)
T ss_pred hhcccchhhhcC
Confidence 999999999996
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-28 Score=265.64 Aligned_cols=245 Identities=27% Similarity=0.436 Sum_probs=208.8
Q ss_pred cCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeE
Q 001248 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 435 (1114)
Q Consensus 356 ~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 435 (1114)
+|.+.|++++|+|++++ +++|+.||.|.+|++.+++... .+..|...+.++.|+|++++|
T Consensus 7 ~h~~~i~~~~~~~~~~~-l~~~~~~g~i~i~~~~~~~~~~-------------------~~~~~~~~i~~~~~~~~~~~l 66 (289)
T cd00200 7 GHTGGVTCVAFSPDGKL-LATGSGDGTIKVWDLETGELLR-------------------TLKGHTGPVRDVAASADGTYL 66 (289)
T ss_pred ccCCCEEEEEEcCCCCE-EEEeecCcEEEEEEeeCCCcEE-------------------EEecCCcceeEEEECCCCCEE
Confidence 59999999999999995 8889999999999999876544 356788899999999999999
Q ss_pred EEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEE
Q 001248 436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 515 (1114)
Q Consensus 436 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 515 (1114)
++++.||.|++||+.+++.+. .+..|...|.++.|+++++ ++++++.|+.|++||+.+++....+..|...+.++
T Consensus 67 ~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ 141 (289)
T cd00200 67 ASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSV 141 (289)
T ss_pred EEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEE
Confidence 999999999999999876554 5778998999999999977 78888889999999999999999999999999999
Q ss_pred eeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCC
Q 001248 516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 595 (1114)
Q Consensus 516 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 595 (1114)
+|++. +.++++++.|+.|++||++..+....+..+...+.++.+++++ +.+++++.+
T Consensus 142 ~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~---------------------~~l~~~~~~ 198 (289)
T cd00200 142 AFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDG---------------------EKLLSSSSD 198 (289)
T ss_pred EEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCc---------------------CEEEEecCC
Confidence 98765 4688888889999999998766666665555555555555554 468888889
Q ss_pred CeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 596 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 596 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
+.|++||+.+++.+..+..+. ..+.++.|++++.++++++.+|.|++|+..++
T Consensus 199 ~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 199 GTIKLWDLSTGKCLGTLRGHE--NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred CcEEEEECCCCceecchhhcC--CceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc
Confidence 999999999988888876543 37899999999999998888999999998765
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-28 Score=300.21 Aligned_cols=297 Identities=11% Similarity=0.168 Sum_probs=231.2
Q ss_pred ccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEee
Q 001248 749 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 828 (1114)
Q Consensus 749 ~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~ 828 (1114)
.|...|.+++|+|+|+++++++.|+.|+||++...... +... ..... .+ .+...+.+++|++
T Consensus 481 ~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~--~~~~------------~~~~~-~~---~~~~~v~~l~~~~ 542 (793)
T PLN00181 481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKD--GRDI------------HYPVV-EL---ASRSKLSGICWNS 542 (793)
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccc--cccc------------ccceE-Ee---cccCceeeEEecc
Confidence 37889999999999999999999999999997531100 0000 00000 01 1346788999987
Q ss_pred -CCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCee
Q 001248 829 -NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT 906 (1114)
Q Consensus 829 -d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~ 906 (1114)
++.+|++++ ||+|++||+.+++.+..+.+|...|++++|+|.++.+|++|+.||.|++||+.++..+..+..| ..|.
T Consensus 543 ~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~ 621 (793)
T PLN00181 543 YIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANIC 621 (793)
T ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeE
Confidence 478899998 9999999999999999999999999999999757899999999999999999999888888755 6799
Q ss_pred EEEEc-CCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCCC-
Q 001248 907 GLAFS-HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKL- 983 (1114)
Q Consensus 907 ~l~~s-~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~~- 983 (1114)
++.|+ +++.+|++|+.|++|++||+..... .+....+|. ..|..+.|. ++.+|++ +.|+.|++||+..+
T Consensus 622 ~v~~~~~~g~~latgs~dg~I~iwD~~~~~~----~~~~~~~h~---~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~ 693 (793)
T PLN00181 622 CVQFPSESGRSLAFGSADHKVYYYDLRNPKL----PLCTMIGHS---KTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSI 693 (793)
T ss_pred EEEEeCCCCCEEEEEeCCCeEEEEECCCCCc----cceEecCCC---CCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCc
Confidence 99995 5799999999999999999986432 223334554 378999997 6677777 68999999999753
Q ss_pred -----ceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcc--c---CCCCCCCCccceEE
Q 001248 984 -----ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAY--L---PAGVSSSNVHPLVI 1053 (1114)
Q Consensus 984 -----~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~--~---~~~~~~~~v~~~~~ 1053 (1114)
..+..+. +|...+.+++|+|++.+|++|+.|+.|++|+......+..+..... . ...+....|. ++
T Consensus 694 ~~~~~~~l~~~~--gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~--~v 769 (793)
T PLN00181 694 SGINETPLHSFM--GHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFIS--SV 769 (793)
T ss_pred cccCCcceEEEc--CCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEE--EE
Confidence 4455554 8899999999999999999999999999999887765543321100 0 0011122244 89
Q ss_pred EecCCCCCeEEEEeCCCcEEEEec
Q 001248 1054 AAHPQEPNEFALGLSDGGVHVFEP 1077 (1114)
Q Consensus 1054 ~~~~~d~~~l~s~~~Dg~v~vW~i 1077 (1114)
+|+| ++.+|++|+.||+|++|++
T Consensus 770 ~ws~-~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 770 CWRG-QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEcC-CCCeEEEecCCCcEEEEec
Confidence 9999 6899999999999999986
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-27 Score=247.19 Aligned_cols=626 Identities=16% Similarity=0.187 Sum_probs=346.8
Q ss_pred cccCCCCCeeEEEEcC-CCCeEEEEeCCCeEEEEEccCCceee---eeEeeccccCCeeEEEecCCCCeeEEEEecCCCC
Q 001248 415 LVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVR---QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT 490 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~sp-dg~~las~~~dg~i~iwd~~~~~~~~---~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~ 490 (1114)
++.+|.+.|+.+.||| +..+||+|+.|..|+||.+..|.... ....+.+..-.|.++.|.|.... ++++ +..|+
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg-il~s-~a~g~ 151 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG-ILAS-GAHGS 151 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc-eEEe-ccCce
Confidence 5889999999999999 77899999999999999998543221 11234444557899999998775 3444 45789
Q ss_pred EEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCC-CeeeecCCCCeeEEEEEecCCCeEE
Q 001248 491 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTY 569 (1114)
Q Consensus 491 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~~~ 569 (1114)
++|||+.+++.+..+.+|...|.++.|+ .||.+|++.+.|+.|++||.+... .+.....|++. .|.+
T Consensus 152 v~i~D~stqk~~~el~~h~d~vQSa~Ws--eDG~llatscKdkqirifDPRa~~~piQ~te~H~~~-------rdsR--- 219 (1012)
T KOG1445|consen 152 VYITDISTQKTAVELSGHTDKVQSADWS--EDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGM-------RDSR--- 219 (1012)
T ss_pred EEEEEcccCceeecccCCchhhhccccc--cCCceEeeecCCcceEEeCCccCCCccccccccccc-------hhhe---
Confidence 9999999999999999999999999985 577999999999999999998753 33344444331 1111
Q ss_pred eeecccceeEEEecCCCCEEEEEe----CCCeEEEEECCC-cceEEEeccCCCCCCcCeEEEcCCCCEEEEE-eCCCcEE
Q 001248 570 QGFRKRSLGVVQFDTTKNRFLAAG----DDFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNKDGCLLAVS-TNDNGIK 643 (1114)
Q Consensus 570 ~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~~dg~i~ 643 (1114)
+.|-.+-.+|++.+ .-..|++||.+. +..+.++..... ..|.---|.||.++|+.+ -.+.++.
T Consensus 220 ----------v~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~s-tGvLiPl~DpDt~llfLaGKG~~~l~ 288 (1012)
T KOG1445|consen 220 ----------VLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSS-TGVLIPLYDPDTRLLFLAGKGTNKLF 288 (1012)
T ss_pred ----------eeeccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecc-cceEeeeecCCCceEEEecCCcceEE
Confidence 22222223455544 356799999765 445566554432 235556688888776654 4567788
Q ss_pred EEEccCCccceee-----------------------ccccccccccCCCCCCCCccchhhh-------hhhhcccccccc
Q 001248 644 ILATSDGIRLLRT-----------------------FENLAYDASRTSENSKPTISPISAA-------AAAAATSAGLAD 693 (1114)
Q Consensus 644 iwd~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 693 (1114)
.+.+...+..+.. +.+....+.+.... .+-+.... .-.+.+.+...+
T Consensus 289 ~lE~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~---~ivPi~y~VPRksyrdFH~DLfPeT~G 365 (1012)
T KOG1445|consen 289 MLEMQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKS---SIVPIPYIVPRKSYRDFHSDLFPETRG 365 (1012)
T ss_pred EEEecCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccC---ceeecccccchhhhhhhhhhhCccccC
Confidence 8877654222111 11111111110000 01110000 000111111111
Q ss_pred ccccccccCCCCCCcccc--------------------CCCcccccccCCCceeEEEecc------------CCCCcccc
Q 001248 694 RAASMVSIPGMNGDVRSL--------------------ADVKPRITEESNDKSKVWKLTE------------LSEPNQCR 741 (1114)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~d~~i~iw~~~~------------~~~~~~~~ 741 (1114)
......+...+++..... +....--+++.+ .+.-... ...+....
T Consensus 366 ~~p~~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~---~v~~ppaaP~~~~n~~~~~~~~Pd~~~ 442 (1012)
T KOG1445|consen 366 AEPGCTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFV---PVPTPPAAPRPMSNNNSSSNNVPDVQE 442 (1012)
T ss_pred CccCcCccceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCc---cccCCCCCCCccccccccccCCCcccc
Confidence 111111111111111000 000000000000 0000000 00000000
Q ss_pred ccccCccccccceEEEEEcc----Cc------c---------eeeecccCc----------------eEEEEeecccccC
Q 001248 742 SLRLPENLRATKISRLIFTN----SG------N---------AILALASNA----------------IHLLWKWQRTERN 786 (1114)
Q Consensus 742 ~~~~~~~~~~~~i~~l~~s~----~~------~---------~l~~~~~dg----------------~i~vw~~~~~~~~ 786 (1114)
.-..+ ....+..+.+-| +| . .+-+.+... +..+-....++.-
T Consensus 443 qpaV~---~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksv 519 (1012)
T KOG1445|consen 443 QPAVP---KKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSV 519 (1012)
T ss_pred CCCcC---cchhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCccccccC
Confidence 00000 000011111100 00 0 000000000 0000000000000
Q ss_pred C----C--CCcc-cc------cccc----c------cCCCCCccccc-----cCCCCCCCCCccEEEEeeCCCEEEEE--
Q 001248 787 S----S--GKAT-AS------VAPQ----L------WQPPSGIMMTN-----DVTDSNPEEAVPCFALSKNDSYVMSA-- 836 (1114)
Q Consensus 787 ~----~--~~~~-~~------~~~~----~------w~~~~g~~~~~-----~~~~~~~~~~v~~v~~s~d~~~l~~~-- 836 (1114)
+ . +..+ ++ ..++ + +.-..|..... .+.+....-+-.+=-|..+.+++|+-
T Consensus 520 Pe~~~~~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~rvAVPL~ 599 (1012)
T KOG1445|consen 520 PEQPPVNFGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCANNKRVAVPLA 599 (1012)
T ss_pred CCCCCcccCCCccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCceeeccceEEEEec
Confidence 0 0 0000 00 0000 0 00000100000 00000011112222344566677753
Q ss_pred -eCCeEEEEEcCCCc-cccc-cCC--CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc-------eEEEeecccccC
Q 001248 837 -SGGKISLFNMMTFK-TMAT-FMP--PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-------EVKSKLKGHSKR 904 (1114)
Q Consensus 837 -~dg~i~iwd~~~~~-~~~~-~~~--~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~-------~~~~~l~~h~~~ 904 (1114)
+.|.|.||++.... ..-. +.+ ....|+.+.|.|.|...||++++||.|++|.+..+ ..-..+.+|...
T Consensus 600 g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eK 679 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEK 679 (1012)
T ss_pred CCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccce
Confidence 37899999997532 2211 111 24569999999999999999999999999999764 344678899999
Q ss_pred eeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCC
Q 001248 905 ITGLAFSHA-LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTK 982 (1114)
Q Consensus 905 V~~l~~s~d-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~ 982 (1114)
|+++.|+|- ...|++++.|.+|++||+.+.+ ....+.+|. +.|..++|||||+.+|+ +.||+|++|+.++
T Consensus 680 I~slRfHPLAadvLa~asyd~Ti~lWDl~~~~-----~~~~l~gHt---dqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs 751 (1012)
T KOG1445|consen 680 ITSLRFHPLAADVLAVASYDSTIELWDLANAK-----LYSRLVGHT---DQIFGIAWSPDGRRIATVCKDGTLRVYEPRS 751 (1012)
T ss_pred EEEEEecchhhhHhhhhhccceeeeeehhhhh-----hhheeccCc---CceeEEEECCCCcceeeeecCceEEEeCCCC
Confidence 999999984 4689999999999999999854 344566776 48999999999999999 8999999999988
Q ss_pred CceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCC----eEEEEEcCCCe--eeEEeCCCcccCCCCCCCCccceEEEec
Q 001248 983 LECVKQWVPRESSAPITHATFSCDSQLVYACFLDA----TVCVFSAANLK--LRCRINPSAYLPAGVSSSNVHPLVIAAH 1056 (1114)
Q Consensus 983 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg----~I~vwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 1056 (1114)
++..-.-....-...-..+.|.-||+++++.+.|. .|.+||..+.. .+.+.. +... -.++--.|.
T Consensus 752 ~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~----lDva-----ps~LvP~YD 822 (1012)
T KOG1445|consen 752 REQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQV----LDVA-----PSPLVPHYD 822 (1012)
T ss_pred CCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeee----eccc-----Ccccccccc
Confidence 76532211111133445678888999988877664 58899987644 222211 1100 223344566
Q ss_pred CCCCCeEEEEeCCCcEEEEeccCCCCcccCCCCCC
Q 001248 1057 PQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVD 1091 (1114)
Q Consensus 1057 ~~d~~~l~s~~~Dg~v~vW~i~~~~~~~~~~~~~~ 1091 (1114)
++.+-++++|-.|..|+++++-...+.+-.-.||.
T Consensus 823 ~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~ 857 (1012)
T KOG1445|consen 823 YDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPFM 857 (1012)
T ss_pred CCCceEEEecCCCceEEEEEecCCCceeeeccccc
Confidence 65556788999999999999988775555445543
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.3e-29 Score=232.64 Aligned_cols=296 Identities=16% Similarity=0.259 Sum_probs=249.9
Q ss_pred CccccccceEEEEEc---cCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCcc
Q 001248 746 PENLRATKISRLIFT---NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP 822 (1114)
Q Consensus 746 ~~~~~~~~i~~l~~s---~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~ 822 (1114)
...+|..+|..++|+ |+|-+|++++.|+.-++ .+-.+|..+.. +. +|.+.|.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pml----------------------r~g~tgdwigt-fe--ghkgavw 63 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPML----------------------RNGDTGDWIGT-FE--GHKGAVW 63 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchh----------------------ccCCCCCcEEe-ee--ccCccee
Confidence 336799999999997 48999999999976543 34446665543 22 4999999
Q ss_pred EEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc-eEEEeecc
Q 001248 823 CFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKG 900 (1114)
Q Consensus 823 ~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~-~~~~~l~~ 900 (1114)
+.+++.|...-|+++ |=+-++||.-+|..+..+. |..-|.+++|+. |.++|++|+.+..+||||++.- ....++.+
T Consensus 64 ~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~g 141 (334)
T KOG0278|consen 64 SATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISG 141 (334)
T ss_pred eeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhcC
Confidence 999999998888888 8899999999999999997 888999999999 8999999999999999999874 45678899
Q ss_pred cccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEc
Q 001248 901 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFET 980 (1114)
Q Consensus 901 h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~ 980 (1114)
|.+.|..+.|....+.++|.+.|++|++||..++...... ... ..|+++-+++||++|.++..+.|..||.
T Consensus 142 htg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL--~~~-------s~VtSlEvs~dG~ilTia~gssV~Fwda 212 (334)
T KOG0278|consen 142 HTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSL--EFN-------SPVTSLEVSQDGRILTIAYGSSVKFWDA 212 (334)
T ss_pred CCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEE--ecC-------CCCcceeeccCCCEEEEecCceeEEecc
Confidence 9999999999998899999999999999999997643321 111 4689999999999999999999999999
Q ss_pred CCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCC
Q 001248 981 TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEP 1060 (1114)
Q Consensus 981 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~ 1060 (1114)
.+...++.+.. ...|.+...+|+...+++|+.|..++.||+.+|+.+..+. .||.+. |. ++.|+| ||
T Consensus 213 ksf~~lKs~k~---P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n------kgh~gp-Vh--cVrFSP-dG 279 (334)
T KOG0278|consen 213 KSFGLLKSYKM---PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN------KGHFGP-VH--CVRFSP-DG 279 (334)
T ss_pred ccccceeeccC---ccccccccccCCCceEEecCcceEEEEEeccCCceeeecc------cCCCCc-eE--EEEECC-CC
Confidence 99999888765 5589999999999999999999999999999999997752 143333 55 899999 79
Q ss_pred CeEEEEeCCCcEEEEeccCCC--CcccCCCCC
Q 001248 1061 NEFALGLSDGGVHVFEPLESE--GKWGVPPPV 1090 (1114)
Q Consensus 1061 ~~l~s~~~Dg~v~vW~i~~~~--~~~~~~~~~ 1090 (1114)
...++||+||+|++|...-++ +.|.--.|-
T Consensus 280 E~yAsGSEDGTirlWQt~~~~~~~~~~~~~~e 311 (334)
T KOG0278|consen 280 ELYASGSEDGTIRLWQTTPGKTYGLWKCVKPE 311 (334)
T ss_pred ceeeccCCCceEEEEEecCCCchhhccccChh
Confidence 999999999999999998887 455555554
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=229.94 Aligned_cols=268 Identities=15% Similarity=0.216 Sum_probs=198.0
Q ss_pred eccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCC-CCcccccccccCCCCCeeEEEEcCCC
Q 001248 354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGA-CSMPLQAALVKDPGVSVNRVIWSPDG 432 (1114)
Q Consensus 354 ~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1114)
...|+.++.+.+|||||. |+|||+.|..|+|.|++..-... ....+..-.. ...|.. .++-.|.+.|+++.|+|..
T Consensus 108 lt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks-~~~em~~~~~qa~hPvI-RTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKS-KPKEMISGDTQARHPVI-RTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred EeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhc-chhhhccCCcccCCceE-eehhhccCcccceeecchh
Confidence 334999999999999999 69999999999999997321100 0000000000 011222 2577899999999999999
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEe---eccc
Q 001248 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF---EGHE 509 (1114)
Q Consensus 433 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~~h~ 509 (1114)
..|++|+.|++|+++|+......+....+ ....+|.++.|.|.|. +++.|..-.++++||+.+-++...- .+|.
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecCcccccc
Confidence 99999999999999999865433333233 3456899999999999 7889999999999999998876543 4699
Q ss_pred cCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecC-CC-CeeEEEEEecCCCeEEeeecccceeEEEecCCCC
Q 001248 510 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA-PG-RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 587 (1114)
Q Consensus 510 ~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~-~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~ 587 (1114)
+.|+++.++ +.+++.++++.||.|++||--+..++.++.. |+ ..|.+..|+.+| +
T Consensus 262 ~ai~~V~Ys--~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~---------------------k 318 (430)
T KOG0640|consen 262 GAITQVRYS--STGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNG---------------------K 318 (430)
T ss_pred cceeEEEec--CCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCC---------------------e
Confidence 999999864 5568999999999999999887777665532 22 245555555555 5
Q ss_pred EEEEEeCCCeEEEEECCCcceEEEeccCCCC---CCcCeEEEcCCCCEEEEEeC-CCcEEEEEccCC
Q 001248 588 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGL---PASPRIRFNKDGCLLAVSTN-DNGIKILATSDG 650 (1114)
Q Consensus 588 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~v~~~~~s~d~~~l~~~~~-dg~i~iwd~~~~ 650 (1114)
++++.+.|..+++|.+.+++++..+.+-+.. ..-+...|+....+++.-.+ .+.+.-||.+++
T Consensus 319 yiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta 385 (430)
T KOG0640|consen 319 YILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA 385 (430)
T ss_pred EEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch
Confidence 8999999999999999999999998765322 22345566666666665443 456777887766
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-27 Score=242.19 Aligned_cols=286 Identities=17% Similarity=0.269 Sum_probs=234.2
Q ss_pred cccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeC
Q 001248 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d 829 (1114)
....|.+++|+|...+=++....-.+.+|+... -..... +. .....++++.|-.|
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~----------------------~~~~k~-~s--rFk~~v~s~~fR~D 79 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVT----------------------RSVRKT-FS--RFKDVVYSVDFRSD 79 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecch----------------------hhhhhh-HH--hhccceeEEEeecC
Confidence 457899999999766555555555666665432 111111 11 15678999999999
Q ss_pred CCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEE
Q 001248 830 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL 908 (1114)
Q Consensus 830 ~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l 908 (1114)
|+++|+|. .|.|+|||+.+...++.+.+|..++..+.|+|.++.++++|++|+.+++||+.+......+.+|++.|.+.
T Consensus 80 G~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g 159 (487)
T KOG0310|consen 80 GRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCG 159 (487)
T ss_pred CeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEee
Confidence 99999999 79999999888778899999999999999999999999999999999999999998877999999999999
Q ss_pred EEcCCC-CEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCCceee
Q 001248 909 AFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVK 987 (1114)
Q Consensus 909 ~~s~d~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~~ 987 (1114)
+|+|-. ..++|||.||+|++||+.... ........+ .+|..+.|-|.|..+|+++...+++||+.+|....
T Consensus 160 ~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~elnhg-----~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll 231 (487)
T KOG0310|consen 160 DISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVELNHG-----CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLL 231 (487)
T ss_pred ccccCCCeEEEecCCCceEEEEEeccCC---ceeEEecCC-----CceeeEEEcCCCCEEEEcCCCeEEEEEecCCceeh
Confidence 999965 478999999999999998743 122223323 37899999999999999999999999999665443
Q ss_pred eeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEe
Q 001248 988 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1067 (1114)
Q Consensus 988 ~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~ 1067 (1114)
.... .|...|||+++..+++.|++|+-|+.|+|||+.+.+.+..+. .|.+ |. +++-+| |++.++.|.
T Consensus 232 ~~~~-~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~----~~~p-----vL--siavs~-dd~t~viGm 298 (487)
T KOG0310|consen 232 TSMF-NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK----YPGP-----VL--SIAVSP-DDQTVVIGM 298 (487)
T ss_pred hhhh-cccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee----cccc-----ee--eEEecC-CCceEEEec
Confidence 3332 489999999999999999999999999999999999999887 5544 44 788888 578999999
Q ss_pred CCCcEEEEeccCCC
Q 001248 1068 SDGGVHVFEPLESE 1081 (1114)
Q Consensus 1068 ~Dg~v~vW~i~~~~ 1081 (1114)
.||.+.+=+...++
T Consensus 299 snGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 299 SNGLVSIRRREVKK 312 (487)
T ss_pred ccceeeeehhhccc
Confidence 99999887665544
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.4e-27 Score=234.09 Aligned_cols=258 Identities=16% Similarity=0.286 Sum_probs=204.6
Q ss_pred CcceeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEE
Q 001248 348 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 427 (1114)
Q Consensus 348 ~~~~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 427 (1114)
|.+-...+-|.+.|.++... +++ +++|+.||.++|||.... ... .+.||.++|.+++
T Consensus 95 aP~pl~~~~hdDWVSsv~~~--~~~-IltgsYDg~~riWd~~Gk-~~~-------------------~~~Ght~~ik~v~ 151 (423)
T KOG0313|consen 95 APKPLQCFLHDDWVSSVKGA--SKW-ILTGSYDGTSRIWDLKGK-SIK-------------------TIVGHTGPIKSVA 151 (423)
T ss_pred CCCccccccchhhhhhhccc--Cce-EEEeecCCeeEEEecCCc-eEE-------------------EEecCCcceeeeE
Confidence 45555777899999999999 565 899999999999998754 333 4789999999888
Q ss_pred EcCC---CCeEEEEeCCCeEEEEEccCCceee-eeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCC-----
Q 001248 428 WSPD---GSLFGVAYSRHIVQIYSYHGGDEVR-QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN----- 498 (1114)
Q Consensus 428 ~spd---g~~las~~~dg~i~iwd~~~~~~~~-~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~----- 498 (1114)
|--. ...+++++.|.++++|.++.++... ....-.||...|-+++..++|. .+++|+.|.+|+||+..+
T Consensus 152 ~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~~ 229 (423)
T KOG0313|consen 152 WVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEEDE 229 (423)
T ss_pred EEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCcccc
Confidence 7543 3369999999999999998775432 1123349999999999999999 799999999999999321
Q ss_pred --------------------CcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEE
Q 001248 499 --------------------GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTT 558 (1114)
Q Consensus 499 --------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~ 558 (1114)
+.++-++.||..+|.++.|.. . ..+++++.|.+|+.||+.+++....+..
T Consensus 230 ~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~--~v~yS~SwDHTIk~WDletg~~~~~~~~------- 299 (423)
T KOG0313|consen 230 LESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-A--TVIYSVSWDHTIKVWDLETGGLKSTLTT------- 299 (423)
T ss_pred ccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-C--CceEeecccceEEEEEeecccceeeeec-------
Confidence 234567889999999999965 2 5899999999999999998766554332
Q ss_pred EEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcc---eEEEeccCCCCCCcCeEEEcC-CCCEEE
Q 001248 559 MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ---LLTSIDADGGLPASPRIRFNK-DGCLLA 634 (1114)
Q Consensus 559 ~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~s~-d~~~l~ 634 (1114)
+..+.++.++|..++|++|+.|..|++||.+++. ....+.+| ...|.++.|+| +..+|+
T Consensus 300 ---------------~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH--~nwVssvkwsp~~~~~~~ 362 (423)
T KOG0313|consen 300 ---------------NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGH--KNWVSSVKWSPTNEFQLV 362 (423)
T ss_pred ---------------CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecc--hhhhhheecCCCCceEEE
Confidence 2255666777777789999999999999998764 33455555 55899999999 567789
Q ss_pred EEeCCCcEEEEEccCCccceeec
Q 001248 635 VSTNDNGIKILATSDGIRLLRTF 657 (1114)
Q Consensus 635 ~~~~dg~i~iwd~~~~~~~~~~~ 657 (1114)
+++.|+++++||+++.+..+..+
T Consensus 363 S~S~D~t~klWDvRS~k~plydI 385 (423)
T KOG0313|consen 363 SGSYDNTVKLWDVRSTKAPLYDI 385 (423)
T ss_pred EEecCCeEEEEEeccCCCcceee
Confidence 99999999999998874444444
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.3e-27 Score=220.81 Aligned_cols=276 Identities=16% Similarity=0.251 Sum_probs=229.5
Q ss_pred eeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCccee--EeeccccCEEEEeeccCCCceEEEEEecCCeEEE
Q 001248 460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY--IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 537 (1114)
Q Consensus 460 ~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~ 537 (1114)
.+.+|...|.+++|+-+|. .+++|+.|+++.+|+++..+... ...+|.+.|..++|++... ..+++++.|++|++
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~--~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~-d~~atas~dk~ir~ 91 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGT--KLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHP-DLFATASGDKTIRI 91 (313)
T ss_pred HhhhhhhcceEEEEcccCc--eeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCC-cceEEecCCceEEE
Confidence 5778999999999999999 79999999999999999876654 4468999999999988654 68999999999999
Q ss_pred EEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCC
Q 001248 538 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 617 (1114)
Q Consensus 538 wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 617 (1114)
||++..++..........+ .+.|+|+|+++++++.|..|.+.|.++.+.....+..
T Consensus 92 wd~r~~k~~~~i~~~~eni----------------------~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~-- 147 (313)
T KOG1407|consen 92 WDIRSGKCTARIETKGENI----------------------NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK-- 147 (313)
T ss_pred EEeccCcEEEEeeccCcce----------------------EEEEcCCCCEEEEecCcccEEEEEecccceeehhccc--
Confidence 9999887766554433322 3566777779999999999999999988877666543
Q ss_pred CCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhcccccccccccc
Q 001248 618 LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAAS 697 (1114)
Q Consensus 618 ~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (1114)
..+.-++|+.++.+++.....|.|.|...... +.+..
T Consensus 148 -~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsL-kpv~s----------------------------------------- 184 (313)
T KOG1407|consen 148 -FEVNEISWNNSNDLFFLTNGLGCVEILSYPSL-KPVQS----------------------------------------- 184 (313)
T ss_pred -ceeeeeeecCCCCEEEEecCCceEEEEecccc-ccccc-----------------------------------------
Confidence 34677889988888877777788877754322 11100
Q ss_pred ccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEE
Q 001248 698 MVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL 777 (1114)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~v 777 (1114)
T Consensus 185 -------------------------------------------------------------------------------- 184 (313)
T KOG1407|consen 185 -------------------------------------------------------------------------------- 184 (313)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccC
Q 001248 778 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM 856 (1114)
Q Consensus 778 w~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~ 856 (1114)
+. .|.....|+.|+|+|+++|+|+ |-.+.+||++..-+.+.+.
T Consensus 185 ----------------------------------i~--AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~is 228 (313)
T KOG1407|consen 185 ----------------------------------IK--AHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCIS 228 (313)
T ss_pred ----------------------------------cc--cCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeec
Confidence 00 1677778899999999999999 8999999999999999999
Q ss_pred CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCC
Q 001248 857 PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD 923 (1114)
Q Consensus 857 ~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D 923 (1114)
.+.-+|+.+.||. ||++||+|++|..|-|=++++|..+..++ +.++-..|+|+|...+||-++.|
T Consensus 229 RldwpVRTlSFS~-dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 229 RLDWPVRTLSFSH-DGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred cccCceEEEEecc-CcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence 9999999999999 99999999999999999999999988887 78889999999999999988776
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-26 Score=209.42 Aligned_cols=276 Identities=17% Similarity=0.248 Sum_probs=209.5
Q ss_pred ceeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEc
Q 001248 350 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 429 (1114)
Q Consensus 350 ~~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 429 (1114)
+.+.++.....|.+++|+|.|. |.|+|+...+.+|-.+..-..++.. .+............-+.|.+.|.|.+||
T Consensus 24 ~~i~~l~dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~----hea~~~pp~v~~kr~khhkgsiyc~~ws 98 (350)
T KOG0641|consen 24 EAINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHA----HEAAKQPPSVLCKRNKHHKGSIYCTAWS 98 (350)
T ss_pred EEEEEecchhheeeEEecCCCc-eEEeccCCceEEEEccccccCcccc----cccccCCCeEEeeeccccCccEEEEEec
Confidence 3456777889999999999999 6999999999988776432222100 0000000011112356799999999999
Q ss_pred CCCCeEEEEeCCCeEEEEEccC--CceeeeeEeeccccCCeeEEEecCC---CCeeEEEEec-CCCCEEEEeCCCCccee
Q 001248 430 PDGSLFGVAYSRHIVQIYSYHG--GDEVRQHLEIDAHVGGVNDIAFSHP---NKQLCVITCG-DDKTIKVWDATNGAKQY 503 (1114)
Q Consensus 430 pdg~~las~~~dg~i~iwd~~~--~~~~~~~~~l~~h~~~V~~v~~s~d---~~~~~l~s~~-~d~~i~iwd~~~~~~~~ 503 (1114)
|+|++||+|++|++|++.-.+. ........++.-|.+.|..++|..+ +.. +|++++ .|..|++=|..+|+..+
T Consensus 99 ~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~~~ 177 (350)
T KOG0641|consen 99 PCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQGFH 177 (350)
T ss_pred CccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCcce
Confidence 9999999999999999876553 3333344468889999999999754 232 566655 57889999999999999
Q ss_pred EeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEec
Q 001248 504 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 583 (1114)
Q Consensus 504 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~ 583 (1114)
.+.||.+.|.++- +-+|-++++|+.|.+|++||++-..++..+... +.-.|.....+..++++
T Consensus 178 a~sghtghilaly---swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~--------------~~~~glessavaav~vd 240 (350)
T KOG0641|consen 178 ALSGHTGHILALY---SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDND--------------FHDGGLESSAVAAVAVD 240 (350)
T ss_pred eecCCcccEEEEE---EecCcEEEccCCCceEEEEeeeccceeeeccCc--------------ccCCCcccceeEEEEEC
Confidence 9999999999874 334579999999999999999865554433211 11112233466777888
Q ss_pred CCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 584 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 584 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
|.|++|++|-.|....+||++.++.++.+..| ...|.|+.|+|...++++++.|..|++-|+...
T Consensus 241 psgrll~sg~~dssc~lydirg~r~iq~f~ph--sadir~vrfsp~a~yllt~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 241 PSGRLLASGHADSSCMLYDIRGGRMIQRFHPH--SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD 305 (350)
T ss_pred CCcceeeeccCCCceEEEEeeCCceeeeeCCC--ccceeEEEeCCCceEEEEecccceEEEeecccc
Confidence 88889999999999999999999999999766 558999999999999999999999999987543
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-27 Score=233.95 Aligned_cols=303 Identities=17% Similarity=0.253 Sum_probs=223.1
Q ss_pred ccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCC-eeEEEEecCCCCEEEE
Q 001248 416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNK-QLCVITCGDDKTIKVW 494 (1114)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~-~~~l~s~~~d~~i~iw 494 (1114)
-..|.+.|.++... ++++++|+.||.++|||..... .. .+.||.++|.+++|--.+. .-.|++++.|.++++|
T Consensus 101 ~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~-~~---~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw 174 (423)
T KOG0313|consen 101 CFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKS-IK---TIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLW 174 (423)
T ss_pred cccchhhhhhhccc--CceEEEeecCCeeEEEecCCce-EE---EEecCCcceeeeEEEecCCccceEEEecCCceEEEE
Confidence 34688999999988 8999999999999999987643 33 5889999999888853322 1259999999999999
Q ss_pred eCCCCcc----eeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEE-EEecC-C---
Q 001248 495 DATNGAK----QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM-AYSAD-G--- 565 (1114)
Q Consensus 495 d~~~~~~----~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~-~~s~~-g--- 565 (1114)
-++.+.. +....||...|.++... ++|..+++|+.|.+|.+|+..... .-.+......-... ...+. +
T Consensus 175 ~~~~~~~~~~~~~~~~GHk~~V~sVsv~--~sgtr~~SgS~D~~lkiWs~~~~~-~~~~E~~s~~rrk~~~~~~~~~~r~ 251 (423)
T KOG0313|consen 175 KWNVGENKVKALKVCRGHKRSVDSVSVD--SSGTRFCSGSWDTMLKIWSVETDE-EDELESSSNRRRKKQKREKEGGTRT 251 (423)
T ss_pred EecCchhhhhHHhHhcccccceeEEEec--CCCCeEEeecccceeeecccCCCc-cccccccchhhhhhhhhhhcccccC
Confidence 9887653 33446999999999854 556899999999999999932211 00000000000000 00000 0
Q ss_pred C-eEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEE
Q 001248 566 T-RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 644 (1114)
Q Consensus 566 ~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~i 644 (1114)
. ..+.||++ .+..+.|++ ...+++++.|.+|+.||+.++..+.++.... .+.++.++|..++|++|+.|..+++
T Consensus 252 P~vtl~GHt~-~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k---sl~~i~~~~~~~Ll~~gssdr~irl 326 (423)
T KOG0313|consen 252 PLVTLEGHTE-PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK---SLNCISYSPLSKLLASGSSDRHIRL 326 (423)
T ss_pred ceEEeccccc-ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc---ceeEeecccccceeeecCCCCceee
Confidence 0 12222322 455555555 3458999999999999999999998887653 5899999999999999999999999
Q ss_pred EEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCC
Q 001248 645 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND 724 (1114)
Q Consensus 645 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 724 (1114)
||.+++...+
T Consensus 327 ~DPR~~~gs~---------------------------------------------------------------------- 336 (423)
T KOG0313|consen 327 WDPRTGDGSV---------------------------------------------------------------------- 336 (423)
T ss_pred cCCCCCCCce----------------------------------------------------------------------
Confidence 9987661100
Q ss_pred ceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCC
Q 001248 725 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPS 804 (1114)
Q Consensus 725 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~ 804 (1114)
....
T Consensus 337 ------------------------------v~~s---------------------------------------------- 340 (423)
T KOG0313|consen 337 ------------------------------VSQS---------------------------------------------- 340 (423)
T ss_pred ------------------------------eEEe----------------------------------------------
Confidence 0000
Q ss_pred CccccccCCCCCCCCCccEEEEeeCCC-EEEEEe-CCeEEEEEcCCCc-cccccCCCCCCeEEEEEecCCCcEEEEEeCC
Q 001248 805 GIMMTNDVTDSNPEEAVPCFALSKNDS-YVMSAS-GGKISLFNMMTFK-TMATFMPPPPAATFLAFHPQDNNIIAIGMDD 881 (1114)
Q Consensus 805 g~~~~~~~~~~~~~~~v~~v~~s~d~~-~l~~~~-dg~i~iwd~~~~~-~~~~~~~~~~~i~~l~~sp~d~~~la~g~~d 881 (1114)
+. +|.+.|.++.++|... .|++++ |+++++||+++.+ .+..+.+|...|.++.|+ ++..|++|+.|
T Consensus 341 -------~~--gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~--~~~~IvSGGaD 409 (423)
T KOG0313|consen 341 -------LI--GHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN--EGGLIVSGGAD 409 (423)
T ss_pred -------ee--cchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc--CCceEEeccCc
Confidence 11 2788888888888665 466777 9999999999877 889999999999999998 47799999999
Q ss_pred CcEEEEEc
Q 001248 882 SSIQIYNV 889 (1114)
Q Consensus 882 g~v~iwd~ 889 (1114)
.+|+|+.-
T Consensus 410 ~~l~i~~~ 417 (423)
T KOG0313|consen 410 NKLRIFKG 417 (423)
T ss_pred ceEEEecc
Confidence 99999864
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-28 Score=243.19 Aligned_cols=260 Identities=18% Similarity=0.288 Sum_probs=216.1
Q ss_pred CCCCcceeEecc-CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCe
Q 001248 345 EDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSV 423 (1114)
Q Consensus 345 ~~~~~~~~~~~~-h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V 423 (1114)
+.+|......+. |.++|..+.|-++... |++|+.|..|.+|++..++.... .++.|-.+.|
T Consensus 161 ~~lpS~~~~~ld~h~gev~~v~~l~~sdt-latgg~Dr~Ik~W~v~~~k~~~~-----------------~tLaGs~g~i 222 (459)
T KOG0288|consen 161 DTLPSRALFVLDAHEGEVHDVEFLRNSDT-LATGGSDRIIKLWNVLGEKSELI-----------------STLAGSLGNI 222 (459)
T ss_pred cccchhhhhhhhccccccceeEEccCcch-hhhcchhhhhhhhhcccchhhhh-----------------hhhhccCCCc
Confidence 345666666666 9999999999999775 99999999999999987662210 1577888899
Q ss_pred eEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCccee
Q 001248 424 NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY 503 (1114)
Q Consensus 424 ~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 503 (1114)
+.++|.++++.+++++.|+.+++|++...+... +|.||.+.|+++.|..... .+++|+.|.+|++||+....|.+
T Consensus 223 t~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~k 297 (459)
T KOG0288|consen 223 TSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSK 297 (459)
T ss_pred ceeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhheec
Confidence 999999999999999999999999999987666 7999999999999998776 59999999999999999998888
Q ss_pred EeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEec
Q 001248 504 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 583 (1114)
Q Consensus 504 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~ 583 (1114)
++- ....+..++.. ...+++|-.|+.|++||.++.........++ .|+++..+++|.
T Consensus 298 t~l-~~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~----------------- 354 (459)
T KOG0288|consen 298 TVL-PGSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGL----------------- 354 (459)
T ss_pred ccc-ccccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCe-----------------
Confidence 765 33455555533 2578999999999999999988777766655 677777766665
Q ss_pred CCCCEEEEEeCCCeEEEEECCCcceEEEeccCCC--CCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCcccee
Q 001248 584 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG--LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR 655 (1114)
Q Consensus 584 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~ 655 (1114)
.+++.+.|.++.+.|+++......+...+. ....+.+.|||++.|+++|+.||.|+||++.++ ++..
T Consensus 355 ----~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg-KlE~ 423 (459)
T KOG0288|consen 355 ----ELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG-KLEK 423 (459)
T ss_pred ----EEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc-eEEE
Confidence 688889999999999999998888865432 234788999999999999999999999999988 4433
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=237.10 Aligned_cols=269 Identities=18% Similarity=0.261 Sum_probs=216.2
Q ss_pred eeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeecc----CCCCcccccccccCCCCCeeEE
Q 001248 351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDL----GACSMPLQAALVKDPGVSVNRV 426 (1114)
Q Consensus 351 ~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~----~~~~~~~~~~~~~~h~~~V~~l 426 (1114)
....-.|.-.|+||+++||+++ .++++.+|+|.=|++.+|+.... +|.- +.-..+.+... .+|...|.++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~-~fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~ 208 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKR-VFSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTL 208 (479)
T ss_pred ceeeccccCcceEEEeeccccc-eeecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEE
Confidence 3445559999999999999997 99999999999999999986531 1111 10112222222 4899999999
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEee
Q 001248 427 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 506 (1114)
Q Consensus 427 ~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 506 (1114)
+.|+||+|||+|+.|..|.||+..+.+.++ .+.+|.+.|.+++|-.... -+++++.|++|++|+++....+.++-
T Consensus 209 avS~Dgkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetly 283 (479)
T KOG0299|consen 209 AVSSDGKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLY 283 (479)
T ss_pred EEcCCCcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHh
Confidence 999999999999999999999999988776 6899999999999987666 58999999999999999999999999
Q ss_pred ccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCC
Q 001248 507 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 586 (1114)
Q Consensus 507 ~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~ 586 (1114)
||.+.|.++...... ..+-.|+.|+++++|++. .+....+.++...+.+++|-.+..
T Consensus 284 GHqd~v~~IdaL~re--R~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~~H-------------------- 340 (479)
T KOG0299|consen 284 GHQDGVLGIDALSRE--RCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFINDEH-------------------- 340 (479)
T ss_pred CCccceeeechhccc--ceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecccc--------------------
Confidence 999999999754332 455555699999999994 345556666666777777665554
Q ss_pred CEEEEEeCCCeEEEEECCCcceEEEeccCC----------CCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCcccee
Q 001248 587 NRFLAAGDDFSIKFWDMDSVQLLTSIDADG----------GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR 655 (1114)
Q Consensus 587 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~ 655 (1114)
+++|+.+|.|.+|++...+++.+..... +..+|++++..|...++++|+.+|.|++|-+.++.+.+.
T Consensus 341 --fvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~ 417 (479)
T KOG0299|consen 341 --FVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAIN 417 (479)
T ss_pred --eeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccc
Confidence 9999999999999999988887764211 112788999999999999999999999999988844333
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-27 Score=265.48 Aligned_cols=304 Identities=18% Similarity=0.250 Sum_probs=239.8
Q ss_pred cccceEEEEEccCcceeeecc--cCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEe
Q 001248 750 RATKISRLIFTNSGNAILALA--SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 827 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s 827 (1114)
+...|.++..+|+|..+++++ .|+.++||+...--. ....++..-...+. ....|.+.|.|+.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~----------~~~~~~~~l~k~l~---~m~~h~~sv~CVR~S 78 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD----------EKEEKNENLPKHLC---TMDDHDGSVNCVRFS 78 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccc----------hhhhhhcccchhhe---eeccccCceeEEEEC
Confidence 455689999999999999999 788999998653110 01112221111111 112399999999999
Q ss_pred eCCCEEEEEe-CCeEEEEEcCC------------------CccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 001248 828 KNDSYVMSAS-GGKISLFNMMT------------------FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 888 (1114)
Q Consensus 828 ~d~~~l~~~~-dg~i~iwd~~~------------------~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd 888 (1114)
+||++||+|+ |+-|.||+... .+....+.+|...|..++|+| ++.+||+++-|++|.||+
T Consensus 79 ~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn 157 (942)
T KOG0973|consen 79 PDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWN 157 (942)
T ss_pred CCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEc
Confidence 9999999999 68899999872 124566889999999999999 999999999999999999
Q ss_pred cccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEE
Q 001248 889 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 968 (1114)
Q Consensus 889 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~ 968 (1114)
..+.+.+..+++|.+.|-++.|.|-|++|||-+.|++|+||++....... .+..+-.+.........+.|||||++|+
T Consensus 158 ~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k--~It~pf~~~~~~T~f~RlSWSPDG~~la 235 (942)
T KOG0973|consen 158 AKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEK--SITKPFEESPLTTFFLRLSWSPDGHHLA 235 (942)
T ss_pred cccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeE--eeccchhhCCCcceeeecccCCCcCeec
Confidence 99999999999999999999999999999999999999999977644322 2222223333334678999999999999
Q ss_pred E--EeC---CeEEEEEcCCCceeeeeecCCCCcCeeEEEECC-----CCC------------EEEEEEcCCeEEEEEcCC
Q 001248 969 V--VHE---TQLAIFETTKLECVKQWVPRESSAPITHATFSC-----DSQ------------LVYACFLDATVCVFSAAN 1026 (1114)
Q Consensus 969 ~--~~d---~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~-----dg~------------~l~s~s~Dg~I~vwd~~~ 1026 (1114)
+ +.. ..+.|.+-.+.+.-..+. ||.+++.++.|+| ..+ .+|+|+.|++|.||....
T Consensus 236 s~nA~n~~~~~~~IieR~tWk~~~~Lv--GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~ 313 (942)
T KOG0973|consen 236 SPNAVNGGKSTIAIIERGTWKVDKDLV--GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL 313 (942)
T ss_pred chhhccCCcceeEEEecCCceeeeeee--cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence 9 333 368888887777766766 8999999999988 111 578999999999999988
Q ss_pred CeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1027 LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1027 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
.+++..+. . +. + -..+.++|+| ||..|..+|.||+|.+..++++|
T Consensus 314 ~RPl~vi~--~-lf----~--~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 314 PRPLFVIH--N-LF----N--KSIVDMSWSP-DGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred CCchhhhh--h-hh----c--CceeeeeEcC-CCCeEEEEecCCeEEEEEcchHH
Confidence 88876543 1 11 1 3345999999 79999999999999999998877
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.5e-26 Score=215.53 Aligned_cols=234 Identities=12% Similarity=0.103 Sum_probs=198.7
Q ss_pred EeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCC
Q 001248 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1114)
.+.+|+.+++.+.|+.+|. ||++++.|.++.||-..+|+.+. .+.||++.|+|++.+-+.
T Consensus 5 ~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlG-------------------ty~GHtGavW~~Did~~s 64 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLG-------------------TYDGHTGAVWCCDIDWDS 64 (327)
T ss_pred ccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceee-------------------eecCCCceEEEEEecCCc
Confidence 4556999999999999999 79999999999999999999987 489999999999999999
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEec-----CCCCEEEEeCC-------CCc
Q 001248 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG-----DDKTIKVWDAT-------NGA 500 (1114)
Q Consensus 433 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~-----~d~~i~iwd~~-------~~~ 500 (1114)
+++++|+.|.++++||+++|+++.. + .-..+|..+.|+++|.. ++.+. ..+.|.++|++ ..+
T Consensus 65 ~~liTGSAD~t~kLWDv~tGk~la~---~-k~~~~Vk~~~F~~~gn~--~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~e 138 (327)
T KOG0643|consen 65 KHLITGSADQTAKLWDVETGKQLAT---W-KTNSPVKRVDFSFGGNL--ILASTDKQMGYTCFVSVFDIRDDSSDIDSEE 138 (327)
T ss_pred ceeeeccccceeEEEEcCCCcEEEE---e-ecCCeeEEEeeccCCcE--EEEEehhhcCcceEEEEEEccCChhhhcccC
Confidence 9999999999999999999998873 2 34668999999999994 33332 34679999998 445
Q ss_pred ceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCee-eecCCCCeeEEEEEecCCCeEEeeecccceeE
Q 001248 501 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 579 (1114)
Q Consensus 501 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~ 579 (1114)
+...+..+...++.+-|.+.. ++|++|..||.|..||++++.... ....|...|..+.+++|..
T Consensus 139 p~~kI~t~~skit~a~Wg~l~--~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T------------- 203 (327)
T KOG0643|consen 139 PYLKIPTPDSKITSALWGPLG--ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT------------- 203 (327)
T ss_pred ceEEecCCccceeeeeecccC--CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcc-------------
Confidence 677888889999999987765 799999999999999999875544 4456666777777777665
Q ss_pred EEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeC
Q 001248 580 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN 638 (1114)
Q Consensus 580 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 638 (1114)
++++++.|.+-++||..+.+.++++... .++++.+++|-...++.|+.
T Consensus 204 --------~FiT~s~Dttakl~D~~tl~v~Kty~te---~PvN~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 204 --------YFITGSKDTTAKLVDVRTLEVLKTYTTE---RPVNTAAISPLLDHVILGGG 251 (327)
T ss_pred --------eEEecccCccceeeeccceeeEEEeeec---ccccceecccccceEEecCC
Confidence 7999999999999999999999998754 46999999997777777654
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=238.63 Aligned_cols=248 Identities=21% Similarity=0.251 Sum_probs=202.6
Q ss_pred ccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCe
Q 001248 355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 434 (1114)
Q Consensus 355 ~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 434 (1114)
....+.|++++|||...|=+|+.+ .-.|.||+..+..... .+......|.++.|-.||++
T Consensus 23 ~ke~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k-------------------~~srFk~~v~s~~fR~DG~L 82 (487)
T KOG0310|consen 23 HKEHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRK-------------------TFSRFKDVVYSVDFRSDGRL 82 (487)
T ss_pred ccccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhh-------------------hHHhhccceeEEEeecCCeE
Confidence 346788999999997776455433 5689999988765543 24455668999999999999
Q ss_pred EEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEE
Q 001248 435 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 514 (1114)
Q Consensus 435 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 514 (1114)
||+|+..|.|+|+|+++...++ .+.+|..+|..+.|+|+++. .+++|++|+.+++||+.+......+.+|++.|.+
T Consensus 83 laaGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~ 158 (487)
T KOG0310|consen 83 LAAGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRC 158 (487)
T ss_pred EEccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeEe
Confidence 9999999999999977754455 68899999999999999887 7999999999999999999887799999999999
Q ss_pred EeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeC
Q 001248 515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 594 (1114)
Q Consensus 515 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 594 (1114)
.+|++.. +.+++|||.||.|++||++.......--.|+.+|.++.+-|.|. +++...
T Consensus 159 g~~~~~~-~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs----------------------~iasAg 215 (487)
T KOG0310|consen 159 GDISPAN-DHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGS----------------------LIASAG 215 (487)
T ss_pred eccccCC-CeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCC----------------------EEEEcC
Confidence 9998754 47999999999999999998754444455777888888888776 444445
Q ss_pred CCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 595 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 595 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
.+.|++||+.+|..+..... .|...|+|+.+..++..|++++-|+.+++||..+-
T Consensus 216 Gn~vkVWDl~~G~qll~~~~-~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~ 270 (487)
T KOG0310|consen 216 GNSVKVWDLTTGGQLLTSMF-NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY 270 (487)
T ss_pred CCeEEEEEecCCceehhhhh-cccceEEEEEeecCCceEeecccccceEEEEccce
Confidence 67899999986654443333 13558999999999999999999999999996544
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-26 Score=257.57 Aligned_cols=243 Identities=19% Similarity=0.336 Sum_probs=212.4
Q ss_pred cCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeE
Q 001248 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 435 (1114)
Q Consensus 356 ~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 435 (1114)
.+...+.|..|. ++ .+.+|+.+++|.+||..++..+.. .+.||.+.|+++++..-+.+|
T Consensus 206 ~~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~l 264 (537)
T KOG0274|consen 206 TDDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKL 264 (537)
T ss_pred cCcchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEE
Confidence 367889999999 44 389999999999999999988763 388999999999998889999
Q ss_pred EEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEE
Q 001248 436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 515 (1114)
Q Consensus 436 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 515 (1114)
++|+.|.+++|||..+|++.. ++.+|.+.|.++...+. ++++|+.|.+|++|+++++.++.++.+|.++|.++
T Consensus 265 vsgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v 337 (537)
T KOG0274|consen 265 VSGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCV 337 (537)
T ss_pred EEEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEE
Confidence 999999999999999999887 78999999999988643 68899999999999999999999999999999999
Q ss_pred eeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCC
Q 001248 516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 595 (1114)
Q Consensus 516 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 595 (1114)
..+ +.++++|+.|++|++||+.+.+++..+.+|...|.++.+.... .+++|+.|
T Consensus 338 ~~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~----------------------~~~Sgs~D 391 (537)
T KOG0274|consen 338 QLD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSEN----------------------RLLSGSLD 391 (537)
T ss_pred Eec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcc----------------------eEEeeeec
Confidence 864 3699999999999999999999999999999999998776542 59999999
Q ss_pred CeEEEEECCCc-ceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeec
Q 001248 596 FSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657 (1114)
Q Consensus 596 g~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 657 (1114)
++|++||+.++ +++.++..|.. .+. .+...+++|++++.|++|++||..++ +..+.+
T Consensus 392 ~~IkvWdl~~~~~c~~tl~~h~~--~v~--~l~~~~~~Lvs~~aD~~Ik~WD~~~~-~~~~~~ 449 (537)
T KOG0274|consen 392 TTIKVWDLRTKRKCIHTLQGHTS--LVS--SLLLRDNFLVSSSADGTIKLWDAEEG-ECLRTL 449 (537)
T ss_pred cceEeecCCchhhhhhhhcCCcc--ccc--ccccccceeEeccccccEEEeecccC-ceeeee
Confidence 99999999999 89999987754 333 33446789999999999999998887 444443
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-26 Score=215.28 Aligned_cols=278 Identities=17% Similarity=0.209 Sum_probs=225.1
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw 494 (1114)
-+.+|...|.+|+|+-+|..||+|+.|+++.+|++...+.. ......+|.+.|-.++|.|.... .+++++.|.+|++|
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~-~~~~~~gh~~svdql~w~~~~~d-~~atas~dk~ir~w 92 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR-KELVYRGHTDSVDQLCWDPKHPD-LFATASGDKTIRIW 92 (313)
T ss_pred HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhh-hhhcccCCCcchhhheeCCCCCc-ceEEecCCceEEEE
Confidence 46789999999999999999999999999999999987433 33457799999999999998777 79999999999999
Q ss_pred eCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecc
Q 001248 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1114)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~ 574 (1114)
|++.++++.......+.+.. +| +|+|.+++.++.|..|.+.|.++.+........ .
T Consensus 93 d~r~~k~~~~i~~~~eni~i-~w--sp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~-~-------------------- 148 (313)
T KOG1407|consen 93 DIRSGKCTARIETKGENINI-TW--SPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK-F-------------------- 148 (313)
T ss_pred EeccCcEEEEeeccCcceEE-EE--cCCCCEEEEecCcccEEEEEecccceeehhccc-c--------------------
Confidence 99999999988766666654 55 456689999999999999999875544332211 1
Q ss_pred cceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccce
Q 001248 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 654 (1114)
Q Consensus 575 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~ 654 (1114)
.+.-++|+.++++++.....|.|.|......++++.++.|. ....|+.|+|+|+++|+|+.|-.+.+||+... .+.
T Consensus 149 -e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~--snCicI~f~p~GryfA~GsADAlvSLWD~~EL-iC~ 224 (313)
T KOG1407|consen 149 -EVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHP--SNCICIEFDPDGRYFATGSADALVSLWDVDEL-ICE 224 (313)
T ss_pred -eeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCC--cceEEEEECCCCceEeeccccceeeccChhHh-hhh
Confidence 22334555555677777778999999999999999999875 46889999999999999999999999997543 111
Q ss_pred eeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccC
Q 001248 655 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 734 (1114)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~ 734 (1114)
+.+.
T Consensus 225 R~is---------------------------------------------------------------------------- 228 (313)
T KOG1407|consen 225 RCIS---------------------------------------------------------------------------- 228 (313)
T ss_pred eeec----------------------------------------------------------------------------
Confidence 1110
Q ss_pred CCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCC
Q 001248 735 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 814 (1114)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~ 814 (1114)
T Consensus 229 -------------------------------------------------------------------------------- 228 (313)
T KOG1407|consen 229 -------------------------------------------------------------------------------- 228 (313)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCC
Q 001248 815 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD 881 (1114)
Q Consensus 815 ~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~d 881 (1114)
.++-+|..+.||.||++||+++ |..|-|=++++|..+..++ +.++-..++|+| ...+||.+.+|
T Consensus 229 -RldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHP-k~~LLAyA~dd 293 (313)
T KOG1407|consen 229 -RLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHP-KRPLLAYACDD 293 (313)
T ss_pred -cccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecC-CCceeeEEecC
Confidence 0566788888888888888888 8888888999999888887 778899999999 88999988866
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=255.43 Aligned_cols=276 Identities=15% Similarity=0.246 Sum_probs=212.3
Q ss_pred ccccceEEEEEccCcceeeecccCceEEEEeeccccc---------------CCCCC--------------ccc------
Q 001248 749 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTER---------------NSSGK--------------ATA------ 793 (1114)
Q Consensus 749 ~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~---------------~~~~~--------------~~~------ 793 (1114)
.|.+.|.++.||+||++||++|.|+.|+||.+...+. ...+. ...
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 4899999999999999999999999999999876210 00000 000
Q ss_pred cccccccCCCCCccccccC-CCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCC
Q 001248 794 SVAPQLWQPPSGIMMTNDV-TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQD 871 (1114)
Q Consensus 794 ~~~~~~w~~~~g~~~~~~~-~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d 871 (1114)
... .+.+.....+....+ .-.+|...|..+.||.++ +|++++ |.+||||++...+++..|. |...|||++|+|.|
T Consensus 345 s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvD 421 (712)
T KOG0283|consen 345 SPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVD 421 (712)
T ss_pred Ccc-ccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccC
Confidence 000 011111111111100 112599999999999887 566666 9999999999999999998 99999999999999
Q ss_pred CcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCC
Q 001248 872 NNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPT 951 (1114)
Q Consensus 872 ~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 951 (1114)
.+++++|+-||.||||++...+.+.-.. -..-|++++|+|||+..+.|+.+|.+++|+....+......+....+....
T Consensus 422 DryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~ 500 (712)
T KOG0283|consen 422 DRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQ 500 (712)
T ss_pred CCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcccc
Confidence 9999999999999999999877654444 347899999999999999999999999999998776655555555444444
Q ss_pred CCCceEEEEccCC--cEEEEEeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCe
Q 001248 952 AQSDTRVQFHQDQ--IHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1028 (1114)
Q Consensus 952 ~~~i~~v~fspdg--~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~ 1028 (1114)
...|+.+.|.|.. +.|+++.|..|+|||..+...+..+..-.....-....|+.||++|+++++|..|+||++....
T Consensus 501 ~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 501 GKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred CceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 4579999999754 4788899999999999888888777632334455778899999999999999999999984433
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-26 Score=217.20 Aligned_cols=287 Identities=18% Similarity=0.255 Sum_probs=223.6
Q ss_pred eEEEEcC--CCCeEEEEEec-----CCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC-CCC
Q 001248 362 MSMDFHP--VQQTLLLVGTN-----VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGS 433 (1114)
Q Consensus 362 ~~v~~sp--dg~~ll~tg~~-----dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~ 433 (1114)
.++.||| +++..+|+++. .|++.|-++..++.+.. ++-+| -.+.+..++||+ ...
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e--~~s~d---------------~~D~LfdV~Wse~~e~ 74 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE--CQSYD---------------TEDGLFDVAWSENHEN 74 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE--EEeee---------------cccceeEeeecCCCcc
Confidence 6788999 45533444432 57899999875544432 22222 245899999999 456
Q ss_pred eEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEE
Q 001248 434 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 513 (1114)
Q Consensus 434 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 513 (1114)
.+++++.||+++|||+.- .-.++..++.|...|.++.|++-.++ .++++|-|++|++|+...++.++++.||..-|.
T Consensus 75 ~~~~a~GDGSLrl~d~~~--~s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy 151 (311)
T KOG0277|consen 75 QVIAASGDGSLRLFDLTM--PSKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIY 151 (311)
T ss_pred eEEEEecCceEEEeccCC--CCcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEEE
Confidence 788889999999999543 23355578999999999999998777 677889999999999999999999999999999
Q ss_pred EEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEe
Q 001248 514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 593 (1114)
Q Consensus 514 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 593 (1114)
...|+|... +++++++.|+++++||++.......+..|...+.+..|+.-.. +.+++|+
T Consensus 152 ~a~~sp~~~-nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~--------------------~vl~Tg~ 210 (311)
T KOG0277|consen 152 QAAFSPHIP-NLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNH--------------------NVLATGG 210 (311)
T ss_pred EEecCCCCC-CeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCC--------------------cEEEecC
Confidence 999998754 7999999999999999998887777888877777777765443 4689999
Q ss_pred CCCeEEEEECCCc-ceEEEeccCCCCCCcCeEEEcC-CCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCC
Q 001248 594 DDFSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS 671 (1114)
Q Consensus 594 ~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1114)
.|+.|++||++.- .++..+.+| .-.|+.+.||| ...+|++++.|-+++|||...+...+.....|+.-+...
T Consensus 211 vd~~vr~wDir~~r~pl~eL~gh--~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~---- 284 (311)
T KOG0277|consen 211 VDNLVRGWDIRNLRTPLFELNGH--GLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGL---- 284 (311)
T ss_pred CCceEEEEehhhccccceeecCC--ceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEecc----
Confidence 9999999999864 456666555 44799999999 467899999999999999987766777766665433211
Q ss_pred CCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEe
Q 001248 672 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL 731 (1114)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~ 731 (1114)
.+ ...+...+++.+-|..+.+|+.
T Consensus 285 --Dw----------------------------------s~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 285 --DW----------------------------------SLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred --cc----------------------------------ccccCceeeecccccceeeecc
Confidence 11 1125678899999999999974
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=256.40 Aligned_cols=272 Identities=14% Similarity=0.171 Sum_probs=203.0
Q ss_pred cCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEE-----------------------------eee-------
Q 001248 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL-----------------------------RNF------- 399 (1114)
Q Consensus 356 ~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~-----------------------------~~~------- 399 (1114)
.|.+.||++.||+||+| ||+|+.||.|+||.+...+.... ...
T Consensus 265 ah~gaIw~mKFS~DGKy-LAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKY-LASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCCCCce-eeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 49999999999999996 99999999999999876111000 000
Q ss_pred -----eeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEec
Q 001248 400 -----KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS 474 (1114)
Q Consensus 400 -----~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s 474 (1114)
.+.+......+-+...+.||.+.|..+.||.++ +|++++.|++|+||++...++++ .| .|..-|+||+|.
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~---~F-~HndfVTcVaFn 418 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLK---VF-SHNDFVTCVAFN 418 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceee---EE-ecCCeeEEEEec
Confidence 000000000111223588999999999999654 88999999999999999999887 33 699999999999
Q ss_pred CCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCC
Q 001248 475 HPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR 554 (1114)
Q Consensus 475 ~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~ 554 (1114)
|-+.. ||++|+-|+.|+||++...+.+.-.. -..-|+++|+. |||++.+.|+.+|.+++|+....+.......
T Consensus 419 PvDDr-yFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~--PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I--- 491 (712)
T KOG0283|consen 419 PVDDR-YFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYS--PDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI--- 491 (712)
T ss_pred ccCCC-cEeecccccceEEeecCcCeeEeehh-hhhhheeEEec--cCCceEEEEEeccEEEEEEccCCeEEEeeeE---
Confidence 97776 89999999999999998877654433 44889999975 4578999999999999999886554432211
Q ss_pred eeEEEEEecCCCeEEeeecccceeEEEecCCC-CEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEE
Q 001248 555 WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK-NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL 633 (1114)
Q Consensus 555 ~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 633 (1114)
.-.+++- ...+.|+.+.|.|.. ..+++.+.|..|||||.++..++..+++......-....|+.||++|
T Consensus 492 -------~~~~~Kk---~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~I 561 (712)
T KOG0283|consen 492 -------RLHNKKK---KQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHI 561 (712)
T ss_pred -------eeccCcc---ccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEE
Confidence 1110000 001134444444322 35888999999999999999999999877655556788999999999
Q ss_pred EEEeCCCcEEEEEccCC
Q 001248 634 AVSTNDNGIKILATSDG 650 (1114)
Q Consensus 634 ~~~~~dg~i~iwd~~~~ 650 (1114)
+++++|..|++|+....
T Consensus 562 Vs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 562 VSASEDSWVYIWKNDSF 578 (712)
T ss_pred EEeecCceEEEEeCCCC
Confidence 99999999999997543
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-25 Score=217.05 Aligned_cols=253 Identities=15% Similarity=0.247 Sum_probs=210.0
Q ss_pred CCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeC--CCcEEEEEcccce
Q 001248 817 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD--DSSIQIYNVRVDE 893 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~--dg~v~iwd~~~~~ 893 (1114)
....|.++.|+.+|.++++++ |..++|||..+++.++++..+.-.+..+.|.. ..+.+..++. |.+|+..++.+.+
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth-~~~~~i~sStk~d~tIryLsl~dNk 91 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTH-HSNTVIHSSTKEDDTIRYLSLHDNK 91 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEec-CCceEEEccCCCCCceEEEEeecCc
Confidence 467899999999999999988 78999999999999999998888899999987 4555555655 8899999999999
Q ss_pred EEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCC
Q 001248 894 VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET 973 (1114)
Q Consensus 894 ~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~ 973 (1114)
.++.|.||...|++|+.+|-+..++|++.|++|++||++..+.+.. +... .-..++|.|+|-++|++.++
T Consensus 92 ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~--l~~~--------~~pi~AfDp~GLifA~~~~~ 161 (311)
T KOG1446|consen 92 YLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL--LNLS--------GRPIAAFDPEGLIFALANGS 161 (311)
T ss_pred eEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE--EecC--------CCcceeECCCCcEEEEecCC
Confidence 9999999999999999999999999999999999999997544322 1111 23578999999999997444
Q ss_pred -eEEEEEcCCC--ceeeeeecC-CCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCcc
Q 001248 974 -QLAIFETTKL--ECVKQWVPR-ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVH 1049 (1114)
Q Consensus 974 -~i~iwd~~~~--~~~~~~~~~-~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 1049 (1114)
.|++||++.. ....++... +-....+.|.|||||++|+.+...+.+++.|.-+|..+..+. ++....-.
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs-------~~~~~~~~ 234 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFS-------GYPNAGNL 234 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEe-------eccCCCCc
Confidence 9999999865 233444432 346689999999999999999999999999999999998887 22233344
Q ss_pred ceEEEecCCCCCeEEEEeCCCcEEEEeccCCCCcccCCC
Q 001248 1050 PLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPP 1088 (1114)
Q Consensus 1050 ~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~~~~~~~~ 1088 (1114)
++..+|.| |++++++|+.||+|.+|++.+|+.......
T Consensus 235 ~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 235 PLSATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAVLRG 272 (311)
T ss_pred ceeEEECC-CCcEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence 57899999 799999999999999999999994444433
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-26 Score=235.94 Aligned_cols=296 Identities=16% Similarity=0.236 Sum_probs=226.5
Q ss_pred cccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEe
Q 001248 748 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 827 (1114)
Q Consensus 748 ~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s 827 (1114)
.+|...|..+++.|.|.++++++-|..|++||++.-..+ -...... .. .....|.++.|+
T Consensus 164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas-----------------~~~fr~l-~P--~E~h~i~sl~ys 223 (641)
T KOG0772|consen 164 KHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDAS-----------------MRSFRQL-QP--CETHQINSLQYS 223 (641)
T ss_pred cCCceEEEEeeecCCCceeeeccccceEEEEeccccccc-----------------chhhhcc-Cc--ccccccceeeec
Confidence 347888999999999999999999999999998742211 0000010 11 146679999999
Q ss_pred eCCCEEEEEe-CCeEEEEEcCCCccccc------------cCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccce-
Q 001248 828 KNDSYVMSAS-GGKISLFNMMTFKTMAT------------FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE- 893 (1114)
Q Consensus 828 ~d~~~l~~~~-dg~i~iwd~~~~~~~~~------------~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~- 893 (1114)
+.|..|++.+ ....+|+|....+.... -++|...++|.+|+|.....+.+++.||++||||+..-+
T Consensus 224 ~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~ 303 (641)
T KOG0772|consen 224 VTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS 303 (641)
T ss_pred CCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh
Confidence 9999888877 78899999865443322 257888999999999888899999999999999997632
Q ss_pred EEEee-----cccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEE
Q 001248 894 VKSKL-----KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 968 (1114)
Q Consensus 894 ~~~~l-----~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~ 968 (1114)
.+..+ .+-.-.++.++|++||+++|.|+.||.|.+|+..+..... .......|.. ...|+++.||+||++|+
T Consensus 304 q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p--~~~vk~AH~~-g~~Itsi~FS~dg~~Ll 380 (641)
T KOG0772|consen 304 QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRP--VMKVKDAHLP-GQDITSISFSYDGNYLL 380 (641)
T ss_pred heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCccccc--ceEeeeccCC-CCceeEEEeccccchhh
Confidence 22222 2344578999999999999999999999999986543322 2333344432 24799999999999999
Q ss_pred E-EeCCeEEEEEcCCCc-eeeeeecCCCCcCeeEEEECCCCCEEEEEEc------CCeEEEEEcCCCeeeEEeCCCcccC
Q 001248 969 V-VHETQLAIFETTKLE-CVKQWVPRESSAPITHATFSCDSQLVYACFL------DATVCVFSAANLKLRCRINPSAYLP 1040 (1114)
Q Consensus 969 ~-~~d~~i~iwd~~~~~-~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~------Dg~I~vwd~~~~~~~~~~~~~~~~~ 1040 (1114)
+ +.|+.+++||++..+ ++..+..-....+-+.++||||.++|++|.. .|.+++||..+...+.++...
T Consensus 381 SRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~---- 456 (641)
T KOG0772|consen 381 SRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS---- 456 (641)
T ss_pred hccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC----
Confidence 9 999999999998764 4444432223556789999999999999874 478999999999999988732
Q ss_pred CCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEec
Q 001248 1041 AGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1077 (1114)
Q Consensus 1041 ~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i 1077 (1114)
+ ..++.+.|+|. =+.|.+|+.||+++|+==
T Consensus 457 -~-----aSvv~~~Whpk-LNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 457 -T-----ASVVRCLWHPK-LNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred -C-----ceEEEEeecch-hhheeeecCCCceEEEEC
Confidence 1 34558999994 677888999999998643
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-27 Score=237.10 Aligned_cols=286 Identities=19% Similarity=0.327 Sum_probs=233.1
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw 494 (1114)
.+..|.+.|..+.|-++...|++|+.|..|++|++..++ ...+.+|.|..++|+++.|.++++ .+++++.|+.+++|
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLW 246 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeee
Confidence 477899999999999999999999999999999998776 334447888899999999999999 78999999999999
Q ss_pred eCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecc
Q 001248 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1114)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~ 574 (1114)
++...+...++.||.+.|+++.|.... ..+++|+.|.+|+.||+....+..+.- ....+..++.+
T Consensus 247 nvd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~------------ 311 (459)
T KOG0288|consen 247 NVDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS------------ 311 (459)
T ss_pred eccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheecccc-ccccccceEec------------
Confidence 999999999999999999999876544 349999999999999998755443322 11222222222
Q ss_pred cceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccce
Q 001248 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 654 (1114)
Q Consensus 575 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~ 654 (1114)
...+++|-.|+.|++||+++..+......++ .|+++..+++|..|.+.+.|.++.+.|.++. ...
T Consensus 312 -----------~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg---~vtSl~ls~~g~~lLsssRDdtl~viDlRt~-eI~ 376 (459)
T KOG0288|consen 312 -----------ISDVISGHFDKKVRFWDIRSADKTRSVPLGG---RVTSLDLSMDGLELLSSSRDDTLKVIDLRTK-EIR 376 (459)
T ss_pred -----------ceeeeecccccceEEEeccCCceeeEeecCc---ceeeEeeccCCeEEeeecCCCceeeeecccc-cEE
Confidence 1247788899999999999999999998765 5999999999999999999999999998765 221
Q ss_pred eeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccC
Q 001248 655 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 734 (1114)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~ 734 (1114)
..+
T Consensus 377 ~~~----------------------------------------------------------------------------- 379 (459)
T KOG0288|consen 377 QTF----------------------------------------------------------------------------- 379 (459)
T ss_pred EEe-----------------------------------------------------------------------------
Confidence 111
Q ss_pred CCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCC
Q 001248 735 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 814 (1114)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~ 814 (1114)
+..|. .
T Consensus 380 -------------------------sA~g~-----------------------------------------------k-- 385 (459)
T KOG0288|consen 380 -------------------------SAEGF-----------------------------------------------K-- 385 (459)
T ss_pred -------------------------ecccc-----------------------------------------------c--
Confidence 11110 0
Q ss_pred CCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCC--CeEEEEEecCCCcEEEEEeCCCcEEEE
Q 001248 815 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPP--AATFLAFHPQDNNIIAIGMDDSSIQIY 887 (1114)
Q Consensus 815 ~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~--~i~~l~~sp~d~~~la~g~~dg~v~iw 887 (1114)
.....+.+.|||++.|+++|+ ||.|+||++.++++...+..... .|++++|+| .|..|++++.++.+.+|
T Consensus 386 --~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~-sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 386 --CASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP-SGSGLLSADKQKAVTLW 458 (459)
T ss_pred --cccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcC-CCchhhcccCCcceEec
Confidence 122367789999999999999 99999999999998888765544 599999999 89999999999999999
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.9e-25 Score=249.15 Aligned_cols=299 Identities=14% Similarity=0.159 Sum_probs=217.0
Q ss_pred ccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEee-C
Q 001248 751 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-N 829 (1114)
Q Consensus 751 ~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~-d 829 (1114)
...|.....++++..++++..+.....|+...+. ..++....|+.......-.+|.+.|.+++|+| +
T Consensus 20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~------------~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d 87 (493)
T PTZ00421 20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGST------------AVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFD 87 (493)
T ss_pred eeccccccccCCCCCcEeECCceEEEEEecCCce------------EEeeccccccCCCCCceEeCCCCCEEEEEEcCCC
Confidence 3455556677787778888888888888754321 11333334443321111234999999999999 8
Q ss_pred CCEEEEEe-CCeEEEEEcCCC-------ccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeeccc
Q 001248 830 DSYVMSAS-GGKISLFNMMTF-------KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH 901 (1114)
Q Consensus 830 ~~~l~~~~-dg~i~iwd~~~~-------~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h 901 (1114)
+++|++++ |++|++||+.++ ..+..+.+|...|.+++|+|.++++|++|+.|++|+|||+.+++.+..+.+|
T Consensus 88 ~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h 167 (493)
T PTZ00421 88 PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCH 167 (493)
T ss_pred CCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCC
Confidence 89999999 999999999764 2456788999999999999944579999999999999999999999999999
Q ss_pred ccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-E----eCCeEE
Q 001248 902 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V----HETQLA 976 (1114)
Q Consensus 902 ~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~----~d~~i~ 976 (1114)
...|++++|+|+|.+|++++.|++|+|||+.+++. +....+|.. .....+.|.+++..+++ + .|+.|+
T Consensus 168 ~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~-----v~tl~~H~~--~~~~~~~w~~~~~~ivt~G~s~s~Dr~Vk 240 (493)
T PTZ00421 168 SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI-----VSSVEAHAS--AKSQRCLWAKRKDLIITLGCSKSQQRQIM 240 (493)
T ss_pred CCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE-----EEEEecCCC--CcceEEEEcCCCCeEEEEecCCCCCCeEE
Confidence 99999999999999999999999999999998553 222333432 23457789998888776 3 378999
Q ss_pred EEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEe
Q 001248 977 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAA 1055 (1114)
Q Consensus 977 iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s-~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 1055 (1114)
+||+++...........+...+....|++|+.+|++++ .|+.|++||+.+++++....... ..... .++|
T Consensus 241 lWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s-------~~~~~--g~~~ 311 (493)
T PTZ00421 241 LWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSS-------VEPHK--GLCM 311 (493)
T ss_pred EEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccC-------CCCCc--ceEe
Confidence 99998765433322112344566778999999999887 59999999999998876654111 11123 5667
Q ss_pred cCCCCCeEEEEeCCCcEEEEeccCC
Q 001248 1056 HPQEPNEFALGLSDGGVHVFEPLES 1080 (1114)
Q Consensus 1056 ~~~d~~~l~s~~~Dg~v~vW~i~~~ 1080 (1114)
.|. ..+-...---.+++.+...
T Consensus 312 ~pk---~~~dv~~~Ei~r~~~l~~~ 333 (493)
T PTZ00421 312 MPK---WSLDTRKCEIARFYALTYH 333 (493)
T ss_pred ccc---ccccccceeeeEEEEecCC
Confidence 762 2232333334466666543
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-25 Score=217.14 Aligned_cols=304 Identities=17% Similarity=0.239 Sum_probs=224.7
Q ss_pred CCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhcccccccccc
Q 001248 616 GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA 695 (1114)
Q Consensus 616 ~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1114)
+|...|++++|+.||++|++++.|++|++|++++-.. +.|...
T Consensus 84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~-----~eHr~~-------------------------------- 126 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFEN-----KEHRCI-------------------------------- 126 (420)
T ss_pred ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhh-----hhhhHh--------------------------------
Confidence 3355899999999999999999999999999876311 111100
Q ss_pred ccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeeccc-Cce
Q 001248 696 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS-NAI 774 (1114)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-dg~ 774 (1114)
...+ ..+..+.+.|+||-+.+++... ...
T Consensus 127 ----------------------------------------------R~nv----e~dhpT~V~FapDc~s~vv~~~~g~~ 156 (420)
T KOG2096|consen 127 ----------------------------------------------RQNV----EYDHPTRVVFAPDCKSVVVSVKRGNK 156 (420)
T ss_pred ----------------------------------------------hccc----cCCCceEEEECCCcceEEEEEccCCE
Confidence 0000 1235578899999887766655 468
Q ss_pred EEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCcccc
Q 001248 775 HLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMA 853 (1114)
Q Consensus 775 i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~ 853 (1114)
+++|.+...+. |...-. ..-||-. .. ...|.-.+..+-+..++++|++++ |.+|.+|+++ |+.+.
T Consensus 157 l~vyk~~K~~d---G~~~~~--~v~~D~~--~f------~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~ 222 (420)
T KOG2096|consen 157 LCVYKLVKKTD---GSGSHH--FVHIDNL--EF------ERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQ 222 (420)
T ss_pred EEEEEeeeccc---CCCCcc--ccccccc--cc------chhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceee
Confidence 99998764322 111110 0112200 00 012666677788888999999999 8899999998 88888
Q ss_pred ccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc---c-----eEEEeecccccCeeEEEEcCCCCEEEEEeCCCc
Q 001248 854 TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---D-----EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ 925 (1114)
Q Consensus 854 ~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~---~-----~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~ 925 (1114)
.+......-+..+.|| +|++||+++..--|++|.+-- | ..+..++||.+.|..++||++...+++.|.||+
T Consensus 223 ~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~ 301 (420)
T KOG2096|consen 223 SIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGK 301 (420)
T ss_pred eeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCc
Confidence 8877777778899999 999999999999999998742 2 245678999999999999999999999999999
Q ss_pred EEEEeCCCCcccccc--ccccCCCCC-CCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCCceeeeeecCCCCcCeeEEE
Q 001248 926 LCVWSSDGWEKQKNR--FLQIPTGRT-PTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHAT 1002 (1114)
Q Consensus 926 v~iwd~~~~~~~~~~--~~~~~~~~~-~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~ 1002 (1114)
++|||++-.-..... .+....... ...+....+.++|.|+.||++....+.+|..++++....+. +.|+..|++++
T Consensus 302 wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e-~~h~~~Is~is 380 (420)
T KOG2096|consen 302 WRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELE-DIHSTTISSIS 380 (420)
T ss_pred EEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHH-HhhcCceeeEE
Confidence 999998753222211 122211110 11134468999999999999999999999999998877765 47899999999
Q ss_pred ECCCCCEEEEEEcCCeEEEEE
Q 001248 1003 FSCDSQLVYACFLDATVCVFS 1023 (1114)
Q Consensus 1003 ~s~dg~~l~s~s~Dg~I~vwd 1023 (1114)
|++||+++++++ |..++|+.
T Consensus 381 ~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 381 YSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred ecCCCcEEeeec-ceeeeeec
Confidence 999999999987 88888876
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=223.41 Aligned_cols=247 Identities=13% Similarity=0.209 Sum_probs=201.0
Q ss_pred cccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeC
Q 001248 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d 829 (1114)
|...|.++.|.|....|++++.|++|+++|+........ ++-.....+|.++.|+|.
T Consensus 171 H~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA-----------------------~K~~qd~~~vrsiSfHPs 227 (430)
T KOG0640|consen 171 HVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRA-----------------------FKVFQDTEPVRSISFHPS 227 (430)
T ss_pred ccCcccceeecchhheEEeccCCCeEEEEecccHHHHHH-----------------------HHHhhccceeeeEeecCC
Confidence 889999999999999999999999999999864321100 000114678999999999
Q ss_pred CCEEEEEeC-CeEEEEEcCCCcccccc---CCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeec-ccc-c
Q 001248 830 DSYVMSASG-GKISLFNMMTFKTMATF---MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK-GHS-K 903 (1114)
Q Consensus 830 ~~~l~~~~d-g~i~iwd~~~~~~~~~~---~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~-~h~-~ 903 (1114)
|.+|++|.| .++++||+.+.++...- .+|.+.|+++.+++ .+++.++|+.||.|++||--+++++.++. +|. .
T Consensus 228 GefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gs 306 (430)
T KOG0640|consen 228 GEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGS 306 (430)
T ss_pred CceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCc
Confidence 999999995 78999999998876543 46888999999999 99999999999999999999999998874 464 4
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE--eCCeEEEEEcC
Q 001248 904 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETT 981 (1114)
Q Consensus 904 ~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~--~d~~i~iwd~~ 981 (1114)
.|.+..|+.+|+++.|.+.|.++++|++.++.....-.-.-..+... .-+...|.....|++.- ..+.++-||.+
T Consensus 307 evcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~---~rtqAvFNhtEdyVl~pDEas~slcsWdaR 383 (430)
T KOG0640|consen 307 EVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQK---HRTQAVFNHTEDYVLFPDEASNSLCSWDAR 383 (430)
T ss_pred eeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchh---hhhhhhhcCccceEEccccccCceeecccc
Confidence 69999999999999999999999999999976533211111111111 22456777777787773 45789999999
Q ss_pred CCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEc
Q 001248 982 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1024 (1114)
Q Consensus 982 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~ 1024 (1114)
++..+..+.. +|++.+..+.-||.+.-+++++.|..+++|--
T Consensus 384 tadr~~l~sl-gHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 384 TADRVALLSL-GHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred chhhhhhccc-CCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 9998887775 89999999999999999999999999999963
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-24 Score=213.37 Aligned_cols=288 Identities=19% Similarity=0.349 Sum_probs=231.9
Q ss_pred eeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEec--CCeEEE
Q 001248 460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL--DGKIKA 537 (1114)
Q Consensus 460 ~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~--d~~i~~ 537 (1114)
.+..-.+.|.++.|+++|. ++++++.|.++++||..+|+.++++..+.-.+..++|...++ .++.++. |.+|+.
T Consensus 9 ~f~~~~~~i~sl~fs~~G~--~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~--~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 9 VFRETNGKINSLDFSDDGL--LLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSN--TVIHSSTKEDDTIRY 84 (311)
T ss_pred ccccCCCceeEEEecCCCC--EEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCc--eEEEccCCCCCceEE
Confidence 4555677899999999999 788999999999999999999999998888898899866553 4555555 889999
Q ss_pred EEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCC
Q 001248 538 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 617 (1114)
Q Consensus 538 wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 617 (1114)
-++.+.+.+..+.+|...|.+++.+|-+. .+++++.|++|++||++..++...+...+.
T Consensus 85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~d---------------------~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~ 143 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPGHKKRVNSLSVSPKDD---------------------TFLSSSLDKTVRLWDLRVKKCQGLLNLSGR 143 (311)
T ss_pred EEeecCceEEEcCCCCceEEEEEecCCCC---------------------eEEecccCCeEEeeEecCCCCceEEecCCC
Confidence 99999999999999998888888777654 699999999999999999888887765433
Q ss_pred CCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCc-cceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccc
Q 001248 618 LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI-RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAA 696 (1114)
Q Consensus 618 ~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1114)
..++|.|+|-++|++...+.|++||++.-. .....+
T Consensus 144 ----pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf--------------------------------------- 180 (311)
T KOG1446|consen 144 ----PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTF--------------------------------------- 180 (311)
T ss_pred ----cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeE---------------------------------------
Confidence 568999999999999988899999986531 011000
Q ss_pred cccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEE
Q 001248 697 SMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHL 776 (1114)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~ 776 (1114)
..+
T Consensus 181 ---------------------------------------------------------------~i~-------------- 183 (311)
T KOG1446|consen 181 ---------------------------------------------------------------SIT-------------- 183 (311)
T ss_pred ---------------------------------------------------------------ccC--------------
Confidence 000
Q ss_pred EEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCcccccc
Q 001248 777 LWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATF 855 (1114)
Q Consensus 777 vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~ 855 (1114)
.+.....+.+.|||||++++.+. .+.+++.|.-+|..+.++
T Consensus 184 --------------------------------------~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tf 225 (311)
T KOG1446|consen 184 --------------------------------------DNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTF 225 (311)
T ss_pred --------------------------------------CCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeE
Confidence 00234456778888888888777 677888888888888877
Q ss_pred CCCCCCe---EEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecc-cccCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001248 856 MPPPPAA---TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG-HSKRITGLAFSHALNVLVSSGADSQLCVWSS 931 (1114)
Q Consensus 856 ~~~~~~i---~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~-h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~ 931 (1114)
..+...- ...+|+| |++++.+|+.||+|.+|+++++..+..+++ +.+++.++.|+|.-..+||+ +..+.+|-.
T Consensus 226 s~~~~~~~~~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p 302 (311)
T KOG1446|consen 226 SGYPNAGNLPLSATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLP 302 (311)
T ss_pred eeccCCCCcceeEEECC-CCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEec
Confidence 6655432 6788999 999999999999999999999999999999 79999999999876666655 567888865
Q ss_pred CC
Q 001248 932 DG 933 (1114)
Q Consensus 932 ~~ 933 (1114)
..
T Consensus 303 ~~ 304 (311)
T KOG1446|consen 303 DE 304 (311)
T ss_pred cc
Confidence 54
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-26 Score=244.84 Aligned_cols=253 Identities=19% Similarity=0.262 Sum_probs=208.5
Q ss_pred CCCCce---EEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCC
Q 001248 357 QGSSPM---SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 433 (1114)
Q Consensus 357 h~~~v~---~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 433 (1114)
|...|. ++..+..+.++|+||+.||.|++|++....... +.++.. .+..|.+.|+.++...+|+
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~------------s~~~~a-sme~HsDWVNDiiL~~~~~ 86 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEP------------STPYIA-SMEHHSDWVNDIILCGNGK 86 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCc------------ccchhh-hhhhhHhHHhhHHhhcCCC
Confidence 444455 555655444459999999999999987543321 112222 4788999999999999999
Q ss_pred eEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEe-cCCCCeeEEEEecCCCCEEEEeCCCCc--ceeE------
Q 001248 434 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF-SHPNKQLCVITCGDDKTIKVWDATNGA--KQYI------ 504 (1114)
Q Consensus 434 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~-s~d~~~~~l~s~~~d~~i~iwd~~~~~--~~~~------ 504 (1114)
.|++++.|-+|++|+...+. -.+..++..|..-|.|++. .++.. ++|+||.|+.|.+||+.++. .+.+
T Consensus 87 tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~ 163 (735)
T KOG0308|consen 87 TLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVTV 163 (735)
T ss_pred ceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence 99999999999999998774 1233378899999999999 66666 89999999999999999873 2322
Q ss_pred --ee-ccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEE
Q 001248 505 --FE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581 (1114)
Q Consensus 505 --~~-~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~ 581 (1114)
+. |+...|.+++.+ ++|..+++|+..+.+++||.++.+.+..+.+|...|..+..+.||+
T Consensus 164 ~sl~sG~k~siYSLA~N--~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt--------------- 226 (735)
T KOG0308|consen 164 NSLGSGPKDSIYSLAMN--QTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGT--------------- 226 (735)
T ss_pred ccCCCCCccceeeeecC--CcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCC---------------
Confidence 23 788999999864 4557999999999999999999999999999998888888777776
Q ss_pred ecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 582 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 582 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
++++++.||+|++||+...+++.++..|.. .|.++..+|+=..+++|+.||.|..-|+.+.
T Consensus 227 ------~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e--~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 227 ------RLLSASSDGTIRLWDLGQQRCLATYIVHKE--GVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred ------eEeecCCCceEEeeeccccceeeeEEeccC--ceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 699999999999999999999999988854 5999999999999999999999999888775
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-25 Score=251.70 Aligned_cols=295 Identities=18% Similarity=0.259 Sum_probs=241.5
Q ss_pred CCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCC
Q 001248 418 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT 497 (1114)
Q Consensus 418 ~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~ 497 (1114)
.|...+.+..|. +.++++++.|++|++||..++..+.. .+.||.+.|++++|..-+. ++++|+.|.++++||..
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~ 279 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCS 279 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecC
Confidence 356788999998 77899999999999999999887662 3889999999999987555 79999999999999999
Q ss_pred CCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccce
Q 001248 498 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 577 (1114)
Q Consensus 498 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v 577 (1114)
+|++..++.+|.+.|.++.... .++++|+.|.+|++|++.++..+..+.+|..+|.++.+.
T Consensus 280 sg~C~~~l~gh~stv~~~~~~~----~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--------------- 340 (537)
T KOG0274|consen 280 TGECTHSLQGHTSSVRCLTIDP----FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--------------- 340 (537)
T ss_pred CCcEEEEecCCCceEEEEEccC----ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec---------------
Confidence 9999999999999999997432 578899999999999999988888888888888887765
Q ss_pred eEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeec
Q 001248 578 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657 (1114)
Q Consensus 578 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 657 (1114)
+.++++|+.|++|.+||+.+++++..+.+| ...|.++.+... ..+++|+.|++|++||+.+..+++..+
T Consensus 341 --------~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH--~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl 409 (537)
T KOG0274|consen 341 --------EPLLVSGSYDGTVKVWDPRTGKCLKSLSGH--TGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTL 409 (537)
T ss_pred --------CCEEEEEecCceEEEEEhhhceeeeeecCC--cceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhh
Confidence 236999999999999999999999999986 458999987665 899999999999999998774333333
Q ss_pred cccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCC
Q 001248 658 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP 737 (1114)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~ 737 (1114)
.+|
T Consensus 410 ~~h----------------------------------------------------------------------------- 412 (537)
T KOG0274|consen 410 QGH----------------------------------------------------------------------------- 412 (537)
T ss_pred cCC-----------------------------------------------------------------------------
Confidence 222
Q ss_pred ccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCC
Q 001248 738 NQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP 817 (1114)
Q Consensus 738 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~ 817 (1114)
T Consensus 413 -------------------------------------------------------------------------------- 412 (537)
T KOG0274|consen 413 -------------------------------------------------------------------------------- 412 (537)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCC-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEE
Q 001248 818 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 895 (1114)
Q Consensus 818 ~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~ 895 (1114)
..-+..+. ..+++|++++ |++|++||..++++++++.+ |...|.++++. ...+++++.||++++||+.++++.
T Consensus 413 ~~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~---~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 413 TSLVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG---KEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred cccccccc--cccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC---cceEEEEecCCeeEEEecccCchh
Confidence 11121111 2456788888 99999999999999999998 67889888886 347888999999999999999988
Q ss_pred Eeecccc-cCeeEEEE
Q 001248 896 SKLKGHS-KRITGLAF 910 (1114)
Q Consensus 896 ~~l~~h~-~~V~~l~~ 910 (1114)
..+-.+. .....+++
T Consensus 488 ~~l~~~~~~~~~~~~~ 503 (537)
T KOG0274|consen 488 RTLLSTDLGATWGVAP 503 (537)
T ss_pred hhhhhccccccccccc
Confidence 8774443 33333444
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-26 Score=215.62 Aligned_cols=252 Identities=13% Similarity=0.253 Sum_probs=210.8
Q ss_pred eeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC
Q 001248 351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1114)
Q Consensus 351 ~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1114)
..+.+.-.+.+..|+||+.....+++++.||.++|||...... +...++.|..+|.++.|++
T Consensus 53 e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~------------------Pi~~~kEH~~EV~Svdwn~ 114 (311)
T KOG0277|consen 53 ECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK------------------PIHKFKEHKREVYSVDWNT 114 (311)
T ss_pred EEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc------------------chhHHHhhhhheEEecccc
Confidence 3455567889999999999888899999999999999543221 2225889999999999999
Q ss_pred -CCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccc
Q 001248 431 -DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE 509 (1114)
Q Consensus 431 -dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~ 509 (1114)
+++.+++++-|++|++|+...+..+. ++.||...|...+|+|.... +++++|.|+++++||++.......+..|.
T Consensus 115 ~~r~~~ltsSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~l~lwdvr~~gk~~~i~ah~ 190 (311)
T KOG0277|consen 115 VRRRIFLTSSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPHIPN-LFASASGDGTLRLWDVRSPGKFMSIEAHN 190 (311)
T ss_pred ccceeEEeeccCCceEeecCCCCcceE---eecCCccEEEEEecCCCCCC-eEEEccCCceEEEEEecCCCceeEEEecc
Confidence 67778888999999999998877666 79999999999999998777 79999999999999998655555589999
Q ss_pred cCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCC-CeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCE
Q 001248 510 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 588 (1114)
Q Consensus 510 ~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~ 588 (1114)
..|.++.|+... ..++++|+.|+.|+.||++..+ ++..+.+|+-.|..+.+||... ..
T Consensus 191 ~Eil~cdw~ky~-~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~--------------------~l 249 (311)
T KOG0277|consen 191 SEILCCDWSKYN-HNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHA--------------------SL 249 (311)
T ss_pred ceeEeecccccC-CcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchh--------------------hH
Confidence 999999997554 4799999999999999999865 4557788888899999888765 35
Q ss_pred EEEEeCCCeEEEEECCCc-ceEEEeccCCCCCCcCeEEEcC-CCCEEEEEeCCCcEEEEEc
Q 001248 589 FLAAGDDFSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILAT 647 (1114)
Q Consensus 589 l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~dg~i~iwd~ 647 (1114)
|++++.|-+++|||...+ ..+.+...| ...+..+.||+ ++.++++.+.|+.+.||+.
T Consensus 250 LaSasYDmT~riw~~~~~ds~~e~~~~H--tEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 250 LASASYDMTVRIWDPERQDSAIETVDHH--TEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhccccceEEecccccchhhhhhhhcc--ceEEeccccccccCceeeecccccceeeecc
Confidence 899999999999998743 445555555 44688899998 7889999999999999974
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=253.74 Aligned_cols=280 Identities=21% Similarity=0.311 Sum_probs=223.0
Q ss_pred CCCCceEEEEcCCCCeEEEEEe--cCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCe
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 434 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~--~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 434 (1114)
++..|..+..+|||.. +|||+ .||.++||+.+.=-. ..+.++.. .+.....+..|.+.|+|+.|||||+|
T Consensus 12 ~~~~IfSIdv~pdg~~-~aTgGq~~d~~~~iW~~~~vl~----~~~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~ 83 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVK-FATGGQVLDGGIVIWSQDPVLD----EKEEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSY 83 (942)
T ss_pred CCeeEEEEEecCCcee-EecCCccccccceeeccccccc----hhhhhhcc---cchhheeeccccCceeEEEECCCCCe
Confidence 3456899999999996 99999 899999999754110 00111111 22223356789999999999999999
Q ss_pred EEEEeCCCeEEEEEccC----------C-----ceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCC
Q 001248 435 FGVAYSRHIVQIYSYHG----------G-----DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG 499 (1114)
Q Consensus 435 las~~~dg~i~iwd~~~----------~-----~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 499 (1114)
||+|++|+.|.||.... | +..+....+.+|...|..++|+|++. ++++++.|++|.|||..+.
T Consensus 84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc
Confidence 99999999999999872 0 12335567899999999999999999 8999999999999999999
Q ss_pred cceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCC------CCeeEEEEEecCCCe------
Q 001248 500 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP------GRWCTTMAYSADGTR------ 567 (1114)
Q Consensus 500 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~------~~~v~~~~~s~~g~~------ 567 (1114)
+.+.++.+|.+.|..+.|. |-|+++++-+.|++|++|++.+-+....+..+ ...+..+.|||||.+
T Consensus 162 ~~~~vl~~H~s~VKGvs~D--P~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 162 ELLKVLRGHQSLVKGVSWD--PIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred eeeeeeecccccccceEEC--CccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 9999999999999999985 45689999999999999997765555444433 336788999999983
Q ss_pred --------------------EEeeecccceeEEEecCC------C-------C----EEEEEeCCCeEEEEECCCcceEE
Q 001248 568 --------------------TYQGFRKRSLGVVQFDTT------K-------N----RFLAAGDDFSIKFWDMDSVQLLT 610 (1114)
Q Consensus 568 --------------------~~~~~~~~~v~~~~~~~~------~-------~----~l~~~~~dg~i~iwd~~~~~~~~ 610 (1114)
.+.||+. .+.++.|+|. . + .+++|+.|++|.||.....+++.
T Consensus 240 ~n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred ccCCcceeEEEecCCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 3445555 8889999873 1 1 56779999999999998777766
Q ss_pred EeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 611 SIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 611 ~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
....-. ...|..++|+|||..|++++.||+|.++.+...
T Consensus 319 vi~~lf-~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 319 VIHNLF-NKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred hhhhhh-cCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 553222 246899999999999999999999999988654
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.5e-25 Score=212.19 Aligned_cols=248 Identities=17% Similarity=0.207 Sum_probs=194.5
Q ss_pred cCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCc-ceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCe
Q 001248 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR-ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 434 (1114)
Q Consensus 356 ~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 434 (1114)
.-.+.|.+++|||....++++||-||+|++|+++.. .... .....|.++|.+++||.||..
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~Wsddgsk 86 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSK 86 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCce
Confidence 367899999999977767889999999999999873 2221 246789999999999999999
Q ss_pred EEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEE
Q 001248 435 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 514 (1114)
Q Consensus 435 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 514 (1114)
+++|+.|+.+++||+.+++.. .+..|.++|.++.|-+...+-.|+|||-|++|+.||.+...++.++. -.+.+.+
T Consensus 87 Vf~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa 161 (347)
T KOG0647|consen 87 VFSGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYA 161 (347)
T ss_pred EEeeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeee
Confidence 999999999999999998644 47789999999999887665579999999999999999999988887 5567777
Q ss_pred EeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeC
Q 001248 515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 594 (1114)
Q Consensus 515 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 594 (1114)
+..-. .+++.+..++.|.+|+++.....+...... ....+++++...+....+.|+-
T Consensus 162 ~Dv~~----pm~vVata~r~i~vynL~n~~te~k~~~Sp-------------------Lk~Q~R~va~f~d~~~~alGsi 218 (347)
T KOG0647|consen 162 ADVLY----PMAVVATAERHIAVYNLENPPTEFKRIESP-------------------LKWQTRCVACFQDKDGFALGSI 218 (347)
T ss_pred hhccC----ceeEEEecCCcEEEEEcCCCcchhhhhcCc-------------------ccceeeEEEEEecCCceEeeee
Confidence 65422 488999999999999997654333211100 1113444555555556789999
Q ss_pred CCeEEEEECCCc--ceEEEeccCCC-------CCCcCeEEEcCCCCEEEEEeCCCcEEEEEccC
Q 001248 595 DFSIKFWDMDSV--QLLTSIDADGG-------LPASPRIRFNKDGCLLAVSTNDNGIKILATSD 649 (1114)
Q Consensus 595 dg~i~iwd~~~~--~~~~~~~~~~~-------~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~ 649 (1114)
+|.+-|..++.+ +.-.+++.|.. .-.|++++|+|.-..|++++.||++.+||-..
T Consensus 219 EGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkda 282 (347)
T KOG0647|consen 219 EGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDA 282 (347)
T ss_pred cceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchh
Confidence 999999999886 44445555542 22477899999888999999999999998643
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=231.20 Aligned_cols=311 Identities=20% Similarity=0.256 Sum_probs=229.6
Q ss_pred CCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhcccccccccc
Q 001248 616 GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA 695 (1114)
Q Consensus 616 ~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1114)
.+...|.++++.|.|..|++|+.|.+|++||+.......+.+..
T Consensus 165 hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~------------------------------------ 208 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQ------------------------------------ 208 (641)
T ss_pred CCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhc------------------------------------
Confidence 34567899999999999999999999999998655222221110
Q ss_pred ccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceE
Q 001248 696 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH 775 (1114)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i 775 (1114)
+ . ......|.++.|++.|..|++.+.....
T Consensus 209 -----------------------------------------------l-~--P~E~h~i~sl~ys~Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 209 -----------------------------------------------L-Q--PCETHQINSLQYSVTGDQILVVSGSAQA 238 (641)
T ss_pred -----------------------------------------------c-C--cccccccceeeecCCCCeEEEEecCcce
Confidence 0 0 1145678999999999999999999999
Q ss_pred EEEeecccccCCCCCccccccccccCCCCCc-cccccCCCCCCCCCccEEEEeeCCC-EEEEEe-CCeEEEEEcCCCcc-
Q 001248 776 LLWKWQRTERNSSGKATASVAPQLWQPPSGI-MMTNDVTDSNPEEAVPCFALSKNDS-YVMSAS-GGKISLFNMMTFKT- 851 (1114)
Q Consensus 776 ~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~-~~~~~~~~~~~~~~v~~v~~s~d~~-~l~~~~-dg~i~iwd~~~~~~- 851 (1114)
+|+|-.... . -....|. .+.......+|...++|.+|+|+.+ .+++++ ||++||||+...+.
T Consensus 239 kl~DRdG~~-------~-------~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q 304 (641)
T KOG0772|consen 239 KLLDRDGFE-------I-------VEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ 304 (641)
T ss_pred eEEccCCce-------e-------eeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh
Confidence 998854321 1 1111222 2222223346999999999999876 455555 99999999975432
Q ss_pred cccc-----CCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccce---EEEeeccccc--CeeEEEEcCCCCEEEEEe
Q 001248 852 MATF-----MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---VKSKLKGHSK--RITGLAFSHALNVLVSSG 921 (1114)
Q Consensus 852 ~~~~-----~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~---~~~~l~~h~~--~V~~l~~s~d~~~l~s~s 921 (1114)
+..+ .+..-.++.++|++ |+++||+|+.||.|.+|+..+.. ....-.+|.. .|+||.||+||++|+|-+
T Consensus 305 ~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg 383 (641)
T KOG0772|consen 305 LQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG 383 (641)
T ss_pred eeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhcc
Confidence 2222 22334689999999 99999999999999999985532 2234466877 899999999999999999
Q ss_pred CCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEe-------CCeEEEEEcCCCceeeeeecCCC
Q 001248 922 ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH-------ETQLAIFETTKLECVKQWVPRES 994 (1114)
Q Consensus 922 ~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~-------d~~i~iwd~~~~~~~~~~~~~~h 994 (1114)
.|+++++||+...+.........+.. -.-+.++||||.++|++|. .+.+.+||..+.+.+..+...
T Consensus 384 ~D~tLKvWDLrq~kkpL~~~tgL~t~-----~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~-- 456 (641)
T KOG0772|consen 384 FDDTLKVWDLRQFKKPLNVRTGLPTP-----FPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS-- 456 (641)
T ss_pred CCCceeeeeccccccchhhhcCCCcc-----CCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC--
Confidence 99999999999865433222222222 2458899999999999842 357999999999988887643
Q ss_pred CcCeeEEEECCCCCEEEEEEcCCeEEEEEcC----CCeeeEEeC
Q 001248 995 SAPITHATFSCDSQLVYACFLDATVCVFSAA----NLKLRCRIN 1034 (1114)
Q Consensus 995 ~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~----~~~~~~~~~ 1034 (1114)
...|..+.|.|.=..|++|+.||.++||--. .|..+|..+
T Consensus 457 ~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~~S~RGak~cv~k 500 (641)
T KOG0772|consen 457 TASVVRCLWHPKLNQIFAGSGDGTAHVYYDPNESIRGAKLCVVK 500 (641)
T ss_pred CceEEEEeecchhhheeeecCCCceEEEECccccccchhheeec
Confidence 6789999999999999999999999998433 344455554
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=211.51 Aligned_cols=240 Identities=20% Similarity=0.226 Sum_probs=202.2
Q ss_pred CCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCc--EEEEEeCCCcEEEEEcccc
Q 001248 816 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN--IIAIGMDDSSIQIYNVRVD 892 (1114)
Q Consensus 816 ~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~--~la~g~~dg~v~iwd~~~~ 892 (1114)
.|...++++|+ ++.++|+|+ |.+|+|||+.....+..+-.|.+.|+++.|.+ ... .|.+|++||.|.+|+..++
T Consensus 41 aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~W 117 (362)
T KOG0294|consen 41 AHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGSW 117 (362)
T ss_pred ccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcCCe
Confidence 48999999998 688999999 99999999999999999999999999999998 543 8899999999999999999
Q ss_pred eEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeC
Q 001248 893 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE 972 (1114)
Q Consensus 893 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d 972 (1114)
+++..+++|.+.|+.++.+|.+++-++.+.|+.++.||+-+++......+.. ..+.+.|+|.|.+++++..
T Consensus 118 ~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~---------~at~v~w~~~Gd~F~v~~~ 188 (362)
T KOG0294|consen 118 ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN---------KATLVSWSPQGDHFVVSGR 188 (362)
T ss_pred EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC---------cceeeEEcCCCCEEEEEec
Confidence 9999999999999999999999999999999999999998876533222221 2356999999999999989
Q ss_pred CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceE
Q 001248 973 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLV 1052 (1114)
Q Consensus 973 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1052 (1114)
..|-+|.+.+....+.+.. ...+.++.|- ++..|++|..|+.|.+||.++....+.+. +|... |- .
T Consensus 189 ~~i~i~q~d~A~v~~~i~~---~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~-------AH~~R-VK--~ 254 (362)
T KOG0294|consen 189 NKIDIYQLDNASVFREIEN---PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFL-------AHENR-VK--D 254 (362)
T ss_pred cEEEEEecccHhHhhhhhc---cccceeeeec-CCceEEEecCCceEEEeccCCCccceeee-------cchhh-ee--e
Confidence 9999999998887776642 3567777775 66788999999999999999988887776 44333 44 3
Q ss_pred EE-ecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1053 IA-AHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1053 ~~-~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
+. |...++.+|+|+++||.|+|||+....
T Consensus 255 i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 255 IASYTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred eEEEecCCceEEEEeccCceEEEEEccccc
Confidence 43 333367899999999999999998773
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-24 Score=243.87 Aligned_cols=264 Identities=14% Similarity=0.142 Sum_probs=196.8
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC-CCCeE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLF 435 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l 435 (1114)
|-..|....+++|+.. +++++.+.....|+...+..+. ..-+.+ ..+.....+.+|.+.|.+++|+| ++++|
T Consensus 19 ~~~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~----~~~~~G--~~~~~~~~l~GH~~~V~~v~fsP~d~~~L 91 (493)
T PTZ00421 19 HFLNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVL----KHTDYG--KLASNPPILLGQEGPIIDVAFNPFDPQKL 91 (493)
T ss_pred ceeccccccccCCCCC-cEeECCceEEEEEecCCceEEe----eccccc--cCCCCCceEeCCCCCEEEEEEcCCCCCEE
Confidence 4456677788889774 6777778888899877654321 111111 11111235789999999999999 89999
Q ss_pred EEEeCCCeEEEEEccCCce----eeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccC
Q 001248 436 GVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 511 (1114)
Q Consensus 436 as~~~dg~i~iwd~~~~~~----~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 511 (1114)
|+|+.|++|+|||+.++.. ......+.+|...|.+++|+|++.. +|++|+.|++|+|||+.+++.+..+.+|...
T Consensus 92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~ 170 (493)
T PTZ00421 92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQ 170 (493)
T ss_pred EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCc
Confidence 9999999999999986532 1233468899999999999998644 7999999999999999999999999999999
Q ss_pred EEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEE
Q 001248 512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 591 (1114)
Q Consensus 512 v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~ 591 (1114)
|.+++|++ +|.+|++++.|+.|++||++++.....+..|.... ...+.|.++++.+++
T Consensus 171 V~sla~sp--dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~--------------------~~~~~w~~~~~~ivt 228 (493)
T PTZ00421 171 ITSLEWNL--DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAK--------------------SQRCLWAKRKDLIIT 228 (493)
T ss_pred eEEEEEEC--CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCc--------------------ceEEEEcCCCCeEEE
Confidence 99999875 55899999999999999999877665555554321 122334444445665
Q ss_pred Ee----CCCeEEEEECCCcc-eEEEeccCCCCCCcCeEEEcCCCCEEEEEe-CCCcEEEEEccCCc
Q 001248 592 AG----DDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDGI 651 (1114)
Q Consensus 592 ~~----~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-~dg~i~iwd~~~~~ 651 (1114)
++ .|+.|++||+++.. .+.....+. ...+....|++++++|++++ .|+.|++||+.++.
T Consensus 229 ~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~-~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 229 LGCSKSQQRQIMLWDTRKMASPYSTVDLDQ-SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred EecCCCCCCeEEEEeCCCCCCceeEeccCC-CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 44 47999999998754 333333222 23455667899999999887 59999999999873
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-25 Score=238.51 Aligned_cols=255 Identities=16% Similarity=0.274 Sum_probs=215.8
Q ss_pred CCCCcceeEecc-CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccC-CCCC
Q 001248 345 EDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD-PGVS 422 (1114)
Q Consensus 345 ~~~~~~~~~~~~-h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-h~~~ 422 (1114)
......+..+.. +.+.|+++.|+++|++ ||+|..+|.|.|||..+.+.+.. +.+ |...
T Consensus 203 ~~~s~~v~~l~~~~~~~vtSv~ws~~G~~-LavG~~~g~v~iwD~~~~k~~~~-------------------~~~~h~~r 262 (484)
T KOG0305|consen 203 SASSGSVTELCSFGEELVTSVKWSPDGSH-LAVGTSDGTVQIWDVKEQKKTRT-------------------LRGSHASR 262 (484)
T ss_pred ecCCCceEEeEecCCCceEEEEECCCCCE-EEEeecCCeEEEEehhhcccccc-------------------ccCCcCce
Confidence 334444555555 4899999999999996 99999999999999998777653 555 9999
Q ss_pred eeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcce
Q 001248 423 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ 502 (1114)
Q Consensus 423 V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 502 (1114)
|.+++|+ +..+.+|+.|+.|..+|+...+.... ++.+|...|..+.|++|+. ++++|+.|+.+.|||......+
T Consensus 263 vg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~--~lASGgnDN~~~Iwd~~~~~p~ 336 (484)
T KOG0305|consen 263 VGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGN--QLASGGNDNVVFIWDGLSPEPK 336 (484)
T ss_pred eEEEecc--CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCC--eeccCCCccceEeccCCCcccc
Confidence 9999998 77899999999999999998776543 4889999999999999999 7999999999999999888999
Q ss_pred eEeeccccCEEEEeeccCCCceEEEEEec--CCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEE
Q 001248 503 YIFEGHEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 580 (1114)
Q Consensus 503 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~--d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~ 580 (1114)
..+..|...|.+++|+|-.. .+||+|+. |++|++||..++..+.... ....|.++.|++..+
T Consensus 337 ~~~~~H~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~k-------------- 400 (484)
T KOG0305|consen 337 FTFTEHTAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYK-------------- 400 (484)
T ss_pred EEEeccceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCC--------------
Confidence 99999999999999998876 48888764 9999999999766554433 345677777777765
Q ss_pred EecCCCCEEEE--EeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 581 QFDTTKNRFLA--AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 581 ~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
.+++ |..++.|.||+..+.+.+..+.+|. ..|..++++|||..+++|+.|.++++|++-+.
T Consensus 401 -------Ei~sthG~s~n~i~lw~~ps~~~~~~l~gH~--~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 401 -------ELLSTHGYSENQITLWKYPSMKLVAELLGHT--SRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred -------EEEEecCCCCCcEEEEeccccceeeeecCCc--ceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 3444 4578899999999988888888774 47999999999999999999999999998664
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.5e-25 Score=236.04 Aligned_cols=275 Identities=19% Similarity=0.262 Sum_probs=228.3
Q ss_pred eEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCC
Q 001248 362 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR 441 (1114)
Q Consensus 362 ~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d 441 (1114)
+-+.||..+ +||+|. ...|++|+..+++.... ...+...|+++.|+++|++||+|..+
T Consensus 181 nlldWss~n--~laVal-g~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~~~ 238 (484)
T KOG0305|consen 181 NLLDWSSAN--VLAVAL-GQSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGTSD 238 (484)
T ss_pred hHhhcccCC--eEEEEe-cceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEeecC
Confidence 346788554 477664 56899999999885542 23337799999999999999999999
Q ss_pred CeEEEEEccCCceeeeeEeecc-ccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeE-eeccccCEEEEeecc
Q 001248 442 HIVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI-FEGHEAPVYSVCPHH 519 (1114)
Q Consensus 442 g~i~iwd~~~~~~~~~~~~l~~-h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~h~~~v~~~~~~~ 519 (1114)
|.|.|||..+.+.++ .+.+ |...|.+++|. +. .+.+|+.|+.|..+|++..+.... +.+|...|..+.|++
T Consensus 239 g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~ 311 (484)
T KOG0305|consen 239 GTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP 311 (484)
T ss_pred CeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC
Confidence 999999999877666 6777 99999999998 44 689999999999999998776655 899999999999865
Q ss_pred CCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEe--CCCe
Q 001248 520 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG--DDFS 597 (1114)
Q Consensus 520 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~ 597 (1114)
|+.++++|+.|+.+.+||.....+...+..|...|..++|+|-.. +.|++|+ .|+.
T Consensus 312 --d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~--------------------~lLAsGGGs~D~~ 369 (484)
T KOG0305|consen 312 --DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQS--------------------GLLATGGGSADRC 369 (484)
T ss_pred --CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCcc--------------------CceEEcCCCcccE
Confidence 558999999999999999988899999999999999999988654 3577754 7999
Q ss_pred EEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEE--eCCCcEEEEEccCCccceeeccccccccccCCCCCCCCc
Q 001248 598 IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS--TNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTI 675 (1114)
Q Consensus 598 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (1114)
|++||..+++.+..+.... .|.++.|++..+-|+++ ..++.|.||+..+. .....+
T Consensus 370 i~fwn~~~g~~i~~vdtgs---QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~-~~~~~l------------------ 427 (484)
T KOG0305|consen 370 IKFWNTNTGARIDSVDTGS---QVCSLIWSKKYKELLSTHGYSENQITLWKYPSM-KLVAEL------------------ 427 (484)
T ss_pred EEEEEcCCCcEecccccCC---ceeeEEEcCCCCEEEEecCCCCCcEEEEecccc-ceeeee------------------
Confidence 9999999999998887543 59999999988777664 45678899987664 222222
Q ss_pred cchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceE
Q 001248 676 SPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKIS 755 (1114)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~ 755 (1114)
.+|..+|.
T Consensus 428 ------------------------------------------------------------------------~gH~~RVl 435 (484)
T KOG0305|consen 428 ------------------------------------------------------------------------LGHTSRVL 435 (484)
T ss_pred ------------------------------------------------------------------------cCCcceeE
Confidence 23888999
Q ss_pred EEEEccCcceeeecccCceEEEEeec
Q 001248 756 RLIFTNSGNAILALASNAIHLLWKWQ 781 (1114)
Q Consensus 756 ~l~~s~~~~~l~~~~~dg~i~vw~~~ 781 (1114)
.++++|||..+++++.|.++++|++-
T Consensus 436 ~la~SPdg~~i~t~a~DETlrfw~~f 461 (484)
T KOG0305|consen 436 YLALSPDGETIVTGAADETLRFWNLF 461 (484)
T ss_pred EEEECCCCCEEEEecccCcEEecccc
Confidence 99999999999999999999999864
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-24 Score=208.44 Aligned_cols=315 Identities=16% Similarity=0.215 Sum_probs=213.5
Q ss_pred cccccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCc-----eeeeeEeeccccCCeeEEEecCCCCeeEEEEecC
Q 001248 413 AALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD-----EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 487 (1114)
Q Consensus 413 ~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~-----~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~ 487 (1114)
..++++|.+.|++++||.||++||+++.|++|+||+++.-. +++...++ +--+.++|+||-+. +++++-.
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~----dhpT~V~FapDc~s-~vv~~~~ 153 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEY----DHPTRVVFAPDCKS-VVVSVKR 153 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccC----CCceEEEECCCcce-EEEEEcc
Confidence 33699999999999999999999999999999999998632 22222122 23578999999986 5666666
Q ss_pred CCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCe
Q 001248 488 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 567 (1114)
Q Consensus 488 d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 567 (1114)
..++++|.+...+. ..+.-|.-.+-.+.|. ..|.-.+..+-..
T Consensus 154 g~~l~vyk~~K~~d-G~~~~~~v~~D~~~f~-------------------------------~kh~v~~i~iGiA----- 196 (420)
T KOG2096|consen 154 GNKLCVYKLVKKTD-GSGSHHFVHIDNLEFE-------------------------------RKHQVDIINIGIA----- 196 (420)
T ss_pred CCEEEEEEeeeccc-CCCCcccccccccccc-------------------------------hhcccceEEEeec-----
Confidence 67788887543221 1111111111111110 0011111222221
Q ss_pred EEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEc
Q 001248 568 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT 647 (1114)
Q Consensus 568 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~ 647 (1114)
..+.++++++.|..|.+|++. |+.+..+.... ..-...+.||+|+++++++..--|++|.+
T Consensus 197 ----------------~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq--~~n~~aavSP~GRFia~~gFTpDVkVwE~ 257 (420)
T KOG2096|consen 197 ----------------GNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQ--SSNYDAAVSPDGRFIAVSGFTPDVKVWEP 257 (420)
T ss_pred ----------------CCceEEEEecCCCcEEEEecC-Cceeeeecccc--ccccceeeCCCCcEEEEecCCCCceEEEE
Confidence 223368889999999999997 88888876542 24467899999999999999999999975
Q ss_pred cCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCcee
Q 001248 648 SDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSK 727 (1114)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 727 (1114)
.-++ .+ .|. ...+
T Consensus 258 ~f~k------dG--------------~fq-----------------------------------------------ev~r 270 (420)
T KOG2096|consen 258 IFTK------DG--------------TFQ-----------------------------------------------EVKR 270 (420)
T ss_pred Eecc------Cc--------------chh-----------------------------------------------hhhh
Confidence 3220 00 000 1112
Q ss_pred EEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeeccc-ccCCCCCccccccccccCCCCCc
Q 001248 728 VWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRT-ERNSSGKATASVAPQLWQPPSGI 806 (1114)
Q Consensus 728 iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~-~~~~~~~~~~~~~~~~w~~~~g~ 806 (1114)
++.+ .+|...|..++|+++.+++++.+.||..+|||..-. ....+.+.+.. |.
T Consensus 271 vf~L----------------kGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~----------g~ 324 (420)
T KOG2096|consen 271 VFSL----------------KGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKE----------GS 324 (420)
T ss_pred hhee----------------ccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhc----------CC
Confidence 2222 349999999999999999999999999999998632 11122222211 11
Q ss_pred cccccCCCCCCCCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCcccccc-CCCCCCeEEEEEecCCCcEEEEEeCCCcEE
Q 001248 807 MMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATF-MPPPPAATFLAFHPQDNNIIAIGMDDSSIQ 885 (1114)
Q Consensus 807 ~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~l~~sp~d~~~la~g~~dg~v~ 885 (1114)
..+. ........++++|+|+.||.+....+++|..++++..-++ ..|...|.+++|++ +|+++|+++ |..++
T Consensus 325 ---~pl~--aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~-~g~~~atcG-dr~vr 397 (420)
T KOG2096|consen 325 ---APLH--AAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSS-DGKYIATCG-DRYVR 397 (420)
T ss_pred ---cchh--hcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecC-CCcEEeeec-ceeee
Confidence 0011 1233445899999999999999999999999998877665 46888999999999 999999887 67788
Q ss_pred EEE
Q 001248 886 IYN 888 (1114)
Q Consensus 886 iwd 888 (1114)
++.
T Consensus 398 v~~ 400 (420)
T KOG2096|consen 398 VIR 400 (420)
T ss_pred eec
Confidence 876
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8e-25 Score=211.87 Aligned_cols=251 Identities=17% Similarity=0.332 Sum_probs=213.6
Q ss_pred eeEec-cCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEc
Q 001248 351 VTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 429 (1114)
Q Consensus 351 ~~~~~-~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 429 (1114)
+.+.+ +|++.||.++--.... ++.+++.|.+-+||.+++|.++. .+.||.+.|++++|+
T Consensus 140 lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~-------------------~Y~GH~GSVNsikfh 199 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLA-------------------TYTGHTGSVNSIKFH 199 (481)
T ss_pred ehhhhcccccceeeehhhcCCc-ceeecccccceeEEeecccccee-------------------eecccccceeeEEec
Confidence 44444 4999999999987777 89999999999999999999987 489999999999999
Q ss_pred CCCCeEEEEeCCCeEEEEEc------cC------------------------------Cce-eeeeEeeccccCCeeEEE
Q 001248 430 PDGSLFGVAYSRHIVQIYSY------HG------------------------------GDE-VRQHLEIDAHVGGVNDIA 472 (1114)
Q Consensus 430 pdg~~las~~~dg~i~iwd~------~~------------------------------~~~-~~~~~~l~~h~~~V~~v~ 472 (1114)
+.+.++++++.|++..||.. .. +.. -.+...|.+|.+.|.+..
T Consensus 200 ~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~d 279 (481)
T KOG0300|consen 200 NSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACD 279 (481)
T ss_pred cccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehh
Confidence 99999999999999999962 11 000 113456889999999999
Q ss_pred ecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCC-CCeeeecC
Q 001248 473 FSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEA 551 (1114)
Q Consensus 473 ~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~ 551 (1114)
|...|+ -+++++.|.+..+||+++|+.+..+.||....+.++-++.. .++++.+.|.++++||++.. ..+..+.+
T Consensus 280 WL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ--rLVvTsSrDtTFRLWDFReaI~sV~VFQG 355 (481)
T KOG0300|consen 280 WLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ--RLVVTSSRDTTFRLWDFREAIQSVAVFQG 355 (481)
T ss_pred hhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCCcc--eEEEEeccCceeEeccchhhcceeeeecc
Confidence 999999 58999999999999999999999999999999998876654 78999999999999999853 23446788
Q ss_pred CCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCc-ceEEEeccCCCCCCcCeEEEcCCC
Q 001248 552 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNKDG 630 (1114)
Q Consensus 552 ~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~d~ 630 (1114)
|...|++..|..+.+ +++|+.|.+|++||+++. .++.++... ..++.++++..+
T Consensus 356 HtdtVTS~vF~~dd~----------------------vVSgSDDrTvKvWdLrNMRsplATIRtd---S~~NRvavs~g~ 410 (481)
T KOG0300|consen 356 HTDTVTSVVFNTDDR----------------------VVSGSDDRTVKVWDLRNMRSPLATIRTD---SPANRVAVSKGH 410 (481)
T ss_pred cccceeEEEEecCCc----------------------eeecCCCceEEEeeeccccCcceeeecC---CccceeEeecCC
Confidence 888888888888776 999999999999999764 456666543 358899999988
Q ss_pred CEEEEEeCCCcEEEEEccCC
Q 001248 631 CLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 631 ~~l~~~~~dg~i~iwd~~~~ 650 (1114)
.+++.--.+..|++||+...
T Consensus 411 ~iIAiPhDNRqvRlfDlnG~ 430 (481)
T KOG0300|consen 411 PIIAIPHDNRQVRLFDLNGN 430 (481)
T ss_pred ceEEeccCCceEEEEecCCC
Confidence 89999999999999999765
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-24 Score=221.17 Aligned_cols=293 Identities=16% Similarity=0.189 Sum_probs=225.6
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeee--------------Eee-ccccCCeeEEEecCCCCe
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQH--------------LEI-DAHVGGVNDIAFSHPNKQ 479 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~--------------~~l-~~h~~~V~~v~~s~d~~~ 479 (1114)
+...|.-+|.+|+++||+++..+++.+++|.=|++.+|+..+.. ..- .+|...|.+++.|+||+
T Consensus 137 ~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk- 215 (479)
T KOG0299|consen 137 VIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK- 215 (479)
T ss_pred eeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc-
Confidence 46778999999999999999999999999999999988744111 011 27888999999999999
Q ss_pred eEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEE
Q 001248 480 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM 559 (1114)
Q Consensus 480 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~ 559 (1114)
+|++|+.|..|.|||.++.+.++.+.+|.+.|.+++|-... ..+++++.|+.|++|+++....+.++-+|...|.++
T Consensus 216 -ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 216 -YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred -EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 89999999999999999999999999999999999986544 579999999999999999888888888899888888
Q ss_pred EEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCC
Q 001248 560 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 639 (1114)
Q Consensus 560 ~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d 639 (1114)
....-++ .+-+|+.|+++++|++.... ...+.++ ...+-|++|-.+ ..+++|+.+
T Consensus 293 daL~reR---------------------~vtVGgrDrT~rlwKi~ees-qlifrg~--~~sidcv~~In~-~HfvsGSdn 347 (479)
T KOG0299|consen 293 DALSRER---------------------CVTVGGRDRTVRLWKIPEES-QLIFRGG--EGSIDCVAFIND-EHFVSGSDN 347 (479)
T ss_pred chhcccc---------------------eEEeccccceeEEEeccccc-eeeeeCC--CCCeeeEEEecc-cceeeccCC
Confidence 7766665 24445699999999994433 2333333 346788888755 567899999
Q ss_pred CcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCccccc
Q 001248 640 NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRIT 719 (1114)
Q Consensus 640 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 719 (1114)
|.|.+|++...+.++..-..|.....
T Consensus 348 G~IaLWs~~KKkplf~~~~AHgv~~~------------------------------------------------------ 373 (479)
T KOG0299|consen 348 GSIALWSLLKKKPLFTSRLAHGVIPE------------------------------------------------------ 373 (479)
T ss_pred ceEEEeeecccCceeEeeccccccCC------------------------------------------------------
Confidence 99999998877443332222211000
Q ss_pred ccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccc
Q 001248 720 EESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQL 799 (1114)
Q Consensus 720 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 799 (1114)
. ....+...|++++..|..+.+++++.+|.|++|.+..+-.
T Consensus 374 --------------------~-----~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r-------------- 414 (479)
T KOG0299|consen 374 --------------------L-----DPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR-------------- 414 (479)
T ss_pred --------------------c-----cccccccceeeeEecccCceEEecCCCCceEEEEecCCcc--------------
Confidence 0 0011336899999999999999999999999998764311
Q ss_pred cCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe
Q 001248 800 WQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS 837 (1114)
Q Consensus 800 w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~ 837 (1114)
....+......+.|++++|+++|+++++|.
T Consensus 415 --------~i~~l~~ls~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 415 --------AINLLYSLSLVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred --------ccceeeecccccEEEEEEEccCCCEEEEec
Confidence 001111122567899999999999888875
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-25 Score=237.36 Aligned_cols=372 Identities=16% Similarity=0.197 Sum_probs=265.4
Q ss_pred CCCCee---EEEEc-CCCCeEEEEeCCCeEEEEEccCCcee---eeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCE
Q 001248 419 PGVSVN---RVIWS-PDGSLFGVAYSRHIVQIYSYHGGDEV---RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 491 (1114)
Q Consensus 419 h~~~V~---~l~~s-pdg~~las~~~dg~i~iwd~~~~~~~---~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i 491 (1114)
|...|. ++..+ |.++||.+||.||.|++|++...... .....++.|...|+.++...+++ .|+++|.|-+|
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTV 97 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTV 97 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceE
Confidence 344455 44444 47778999999999999998754321 12346889999999999999998 69999999999
Q ss_pred EEEeCCCC--cceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEE
Q 001248 492 KVWDATNG--AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY 569 (1114)
Q Consensus 492 ~iwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~ 569 (1114)
++|+...+ -++.++..|...|.|++.- ..+..++++||.|+.|.+||+.++.....
T Consensus 98 K~W~~~~~~~~c~stir~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~--------------------- 155 (735)
T KOG0308|consen 98 KVWNAHKDNTFCMSTIRTHKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLV--------------------- 155 (735)
T ss_pred EEeecccCcchhHhhhhcccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhh---------------------
Confidence 99999887 6788999999999999973 44557999999999999999986432100
Q ss_pred eeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccC
Q 001248 570 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 649 (1114)
Q Consensus 570 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~ 649 (1114)
++. ..+..=++.. +....|.+++.++.|..+++|+.++.+++||.++
T Consensus 156 ----------------------~s~-n~~t~~sl~s----------G~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt 202 (735)
T KOG0308|consen 156 ----------------------ASF-NNVTVNSLGS----------GPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRT 202 (735)
T ss_pred ----------------------hhc-cccccccCCC----------CCccceeeeecCCcceEEEecCcccceEEecccc
Confidence 000 0000001100 2245688999999999999999999999999887
Q ss_pred CccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEE
Q 001248 650 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW 729 (1114)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw 729 (1114)
+++..+ ++
T Consensus 203 ~~kimk-Lr----------------------------------------------------------------------- 210 (735)
T KOG0308|consen 203 CKKIMK-LR----------------------------------------------------------------------- 210 (735)
T ss_pred ccceee-ee-----------------------------------------------------------------------
Confidence 732211 11
Q ss_pred EeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCcccc
Q 001248 730 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 809 (1114)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~ 809 (1114)
T Consensus 211 -------------------------------------------------------------------------------- 210 (735)
T KOG0308|consen 211 -------------------------------------------------------------------------------- 210 (735)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 001248 810 NDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 888 (1114)
Q Consensus 810 ~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd 888 (1114)
+|...|.++..+.||..+++++ ||+|++||+...+++.++..|...|.++..+| +-..+.+|+.||.|+.=|
T Consensus 211 ------GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~-sf~~vYsG~rd~~i~~Td 283 (735)
T KOG0308|consen 211 ------GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP-SFTHVYSGGRDGNIYRTD 283 (735)
T ss_pred ------ccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC-CcceEEecCCCCcEEecc
Confidence 2666677777777888888877 88899999988899999999999999999999 889999999999999999
Q ss_pred cccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEE
Q 001248 889 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 968 (1114)
Q Consensus 889 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~ 968 (1114)
+.+......+-....+|..+..+.+.+-+-+++.|+.|+-|..+- ...+++.|.+..
T Consensus 284 l~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~-----------------------~~~l~~s~~~~~ 340 (735)
T KOG0308|consen 284 LRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP-----------------------DIALSVSGDLDF 340 (735)
T ss_pred cCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCcc-----------------------ccccccCCCCCc
Confidence 987432222222345576777764444446677899999997654 113444444444
Q ss_pred EEeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEe
Q 001248 969 VVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1033 (1114)
Q Consensus 969 ~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~ 1033 (1114)
.+.|....+.+... ... ...+| ...|..-++-.|.+++++-...|.+.+||+-.++.+..+
T Consensus 341 ~~T~~~~~~~~~~~-tp~--~vi~G-g~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~ 401 (735)
T KOG0308|consen 341 FSTDSNNHSCDLTN-TPD--SVIPG-GAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVEDF 401 (735)
T ss_pred ccccCCCccccccC-CCc--eeccC-chhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehhhc
Confidence 44444444433321 000 11111 345666677789999999999999999999777665444
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-23 Score=192.35 Aligned_cols=308 Identities=14% Similarity=0.133 Sum_probs=225.5
Q ss_pred cccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeC
Q 001248 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d 829 (1114)
....|.+++|.|.|...++++...+.+|.....-.....+...+.. ....+. .....|.+.|.|.+|||+
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~--------pp~v~~--kr~khhkgsiyc~~ws~~ 100 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQ--------PPSVLC--KRNKHHKGSIYCTAWSPC 100 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccC--------CCeEEe--eeccccCccEEEEEecCc
Confidence 5678999999999999999999999999764321100000000000 000111 111238899999999999
Q ss_pred CCEEEEEe-CCeEEEEEcCCCcc-----ccccCCCCCCeEEEEEecC---CCcEEEEEe-CCCcEEEEEcccceEEEeec
Q 001248 830 DSYVMSAS-GGKISLFNMMTFKT-----MATFMPPPPAATFLAFHPQ---DNNIIAIGM-DDSSIQIYNVRVDEVKSKLK 899 (1114)
Q Consensus 830 ~~~l~~~~-dg~i~iwd~~~~~~-----~~~~~~~~~~i~~l~~sp~---d~~~la~g~-~dg~v~iwd~~~~~~~~~l~ 899 (1114)
|++|++|+ |.+|++.......+ -.++.-|.+.|..++|-.+ ++.+|++++ .|..|++-|..+|+....+.
T Consensus 101 geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s 180 (350)
T KOG0641|consen 101 GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS 180 (350)
T ss_pred cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec
Confidence 99999999 89999876653322 2346778999999999642 356888765 57789999999999999999
Q ss_pred ccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCeEEEE
Q 001248 900 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIF 978 (1114)
Q Consensus 900 ~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~i~iw 978 (1114)
||.+.|.++ ++-+|-.+++|+.|.+|++||+.-...... .-..+.+.......|.+++..|.|++|+++ .|..-.+|
T Consensus 181 ghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~-l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~ly 258 (350)
T KOG0641|consen 181 GHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNT-LDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLY 258 (350)
T ss_pred CCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeee-ccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEE
Confidence 999999876 334688999999999999999986433221 111122222223578999999999999996 78889999
Q ss_pred EcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCC
Q 001248 979 ETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ 1058 (1114)
Q Consensus 979 d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 1058 (1114)
|++.+..+..+. .|+..|.++.|||.-.||++++.|..|++-|+... +-..+.. ..-..|... .+.+.|+|+
T Consensus 259 dirg~r~iq~f~--phsadir~vrfsp~a~yllt~syd~~ikltdlqgd-la~el~~--~vv~ehkdk---~i~~rwh~~ 330 (350)
T KOG0641|consen 259 DIRGGRMIQRFH--PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD-LAHELPI--MVVAEHKDK---AIQCRWHPQ 330 (350)
T ss_pred EeeCCceeeeeC--CCccceeEEEeCCCceEEEEecccceEEEeecccc-hhhcCce--EEEEeccCc---eEEEEecCc
Confidence 999999999886 78999999999999999999999999999998632 2222210 011123333 346999997
Q ss_pred CCCeEEEEeCCCcEEEEecc
Q 001248 1059 EPNEFALGLSDGGVHVFEPL 1078 (1114)
Q Consensus 1059 d~~~l~s~~~Dg~v~vW~i~ 1078 (1114)
| --+++.+.|.++-+|.++
T Consensus 331 d-~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 331 D-FSFISSSADKTATLWALN 349 (350)
T ss_pred c-ceeeeccCcceEEEeccC
Confidence 5 568888999999999864
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-24 Score=207.77 Aligned_cols=207 Identities=18% Similarity=0.208 Sum_probs=161.4
Q ss_pred ccCCCCCeeEEEEcC-CCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE
Q 001248 416 VKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1114)
Q Consensus 416 ~~~h~~~V~~l~~sp-dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw 494 (1114)
-...++.|.+|+||| ...++++++-|++|++|+++....... .....|.++|.+++|+.||. .+++|+.|+.+++|
T Consensus 23 ~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 23 PNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLW 99 (347)
T ss_pred CCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEE
Confidence 345678999999999 555666889999999999987422222 35668999999999999998 79999999999999
Q ss_pred eCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecc
Q 001248 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1114)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~ 574 (1114)
|+.+++ +..+..|.++|..+.|....+-..|++|+.|++|++||.+...++..+..++. ++++.
T Consensus 100 DL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR-vYa~D-------------- 163 (347)
T KOG0647|consen 100 DLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER-VYAAD-------------- 163 (347)
T ss_pred EccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce-eeehh--------------
Confidence 999995 66777899999999998777667899999999999999998877776665542 22221
Q ss_pred cceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 575 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
-....++.+..++.|.+|+++.+..........-.-.++|++..+|....+.|+-+|.+.|..+..+
T Consensus 164 ---------v~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~ 230 (347)
T KOG0647|consen 164 ---------VLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDP 230 (347)
T ss_pred ---------ccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCC
Confidence 1123577888999999999977654332211111235789999998888899999999998887665
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-24 Score=217.19 Aligned_cols=242 Identities=18% Similarity=0.294 Sum_probs=197.6
Q ss_pred cccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeC
Q 001248 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d 829 (1114)
|...|..+.|+++...+++++.|..|+||........ .. ...|..+|+.+..+|.
T Consensus 260 h~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~-------------------~~------~~~h~~~V~~ls~h~t 314 (506)
T KOG0289|consen 260 HTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP-------------------TS------SRPHEEPVTGLSLHPT 314 (506)
T ss_pred cceEEEEEEeccchhheeecCCcceEEeeccccccCc-------------------cc------cccccccceeeeeccC
Confidence 6678899999999999999999999999976532110 00 1138999999999999
Q ss_pred CCEEEEEe-CCeEEEEEcCCCccccccCC--CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCee
Q 001248 830 DSYVMSAS-GGKISLFNMMTFKTMATFMP--PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT 906 (1114)
Q Consensus 830 ~~~l~~~~-dg~i~iwd~~~~~~~~~~~~--~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~ 906 (1114)
|.||++++ |+++.+.|+.++..+..... ..-.+++.+|+| ||.++++|..||.|+|||+.++..+..|.+|+++|.
T Consensus 315 geYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk 393 (506)
T KOG0289|consen 315 GEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVK 393 (506)
T ss_pred CcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCcee
Confidence 99999999 89999999999988776653 234589999999 999999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCeEEEEEcCCCce
Q 001248 907 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC 985 (1114)
Q Consensus 907 ~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~i~iwd~~~~~~ 985 (1114)
.|+|+.+|-|||+++.|+.|++||++.-+.... +..... ..+..+.|.+.|.+|+.+ .+=+|++++-.+..-
T Consensus 394 ~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt--~~l~~~-----~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W 466 (506)
T KOG0289|consen 394 AISFSENGYWLATAADDGSVKLWDLRKLKNFKT--IQLDEK-----KEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSW 466 (506)
T ss_pred EEEeccCceEEEEEecCCeEEEEEehhhcccce--eecccc-----ccceeEEEcCCCCeEEeecceeEEEEEecccccc
Confidence 999999999999999999999999987443221 111111 258999999999999994 555676766444433
Q ss_pred eeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEc
Q 001248 986 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1024 (1114)
Q Consensus 986 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~ 1024 (1114)
........|.+..+.+.|..+.+++++++.|..++++.+
T Consensus 467 ~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 467 TEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 333333477889999999999999999999999888764
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=238.62 Aligned_cols=224 Identities=16% Similarity=0.218 Sum_probs=178.2
Q ss_pred CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccce--------EEEeecccccCeeEEE
Q 001248 838 GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE--------VKSKLKGHSKRITGLA 909 (1114)
Q Consensus 838 dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~--------~~~~l~~h~~~V~~l~ 909 (1114)
++.|++|+......+..+.+|...|.+++|+|+++.+||+|+.||+|+|||+.++. .+..+.+|...|++++
T Consensus 53 ~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVa 132 (568)
T PTZ00420 53 IGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIID 132 (568)
T ss_pred eeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEE
Confidence 57899999887777888999999999999999558999999999999999997642 3456789999999999
Q ss_pred EcCCCCE-EEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCCCceee
Q 001248 910 FSHALNV-LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVK 987 (1114)
Q Consensus 910 ~s~d~~~-l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~~~~~~ 987 (1114)
|+|++.. |++++.|++|+|||+.+++... ... +. ..|.+++|+|+|.+|++ +.|+.|++||+++++.+.
T Consensus 133 f~P~g~~iLaSgS~DgtIrIWDl~tg~~~~-----~i~-~~---~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~ 203 (568)
T PTZ00420 133 WNPMNYYIMCSSGFDSFVNIWDIENEKRAF-----QIN-MP---KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIAS 203 (568)
T ss_pred ECCCCCeEEEEEeCCCeEEEEECCCCcEEE-----EEe-cC---CcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEE
Confidence 9999875 5799999999999999865321 111 11 36899999999999998 579999999999999888
Q ss_pred eeecCCCCcCee-----EEEECCCCCEEEEEEcCC----eEEEEEcCC-CeeeEEeCCCcccCCCCCCCCccceEEEecC
Q 001248 988 QWVPRESSAPIT-----HATFSCDSQLVYACFLDA----TVCVFSAAN-LKLRCRINPSAYLPAGVSSSNVHPLVIAAHP 1057 (1114)
Q Consensus 988 ~~~~~~h~~~v~-----~l~~s~dg~~l~s~s~Dg----~I~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 1057 (1114)
.+. +|.+.+. ...|++++.+|++++.|+ .|+|||+.+ ++.+..+. +..+ ..++...|.+
T Consensus 204 tl~--gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~----ld~~-----~~~L~p~~D~ 272 (568)
T PTZ00420 204 SFH--IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMS----IDNA-----SAPLIPHYDE 272 (568)
T ss_pred EEe--cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEE----ecCC-----ccceEEeeeC
Confidence 775 6765543 234578999999988774 799999985 55565543 1111 2333455667
Q ss_pred CCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1058 QEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1058 ~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
+++.++++|+.|++|++|++..+.
T Consensus 273 ~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 273 STGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred CCCCEEEEEECCCeEEEEEccCCc
Confidence 678899999999999999998765
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-25 Score=218.78 Aligned_cols=286 Identities=16% Similarity=0.226 Sum_probs=220.7
Q ss_pred ccCCCCCeeEEEEcCCC-CeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE
Q 001248 416 VKDPGVSVNRVIWSPDG-SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1114)
Q Consensus 416 ~~~h~~~V~~l~~spdg-~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw 494 (1114)
+.||.+.|.|+|=+|.. ..+|+|+.||.|+|||+....+.. ++..|.+.|..+++.. . .+++++.|++|+.|
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~---~f~AH~G~V~Gi~v~~--~--~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR---TFKAHEGLVRGICVTQ--T--SFFTVGDDKTVKQW 134 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh---eeecccCceeeEEecc--c--ceEEecCCcceeee
Confidence 58999999999999987 889999999999999999987776 7999999999999987 3 48999999999999
Q ss_pred eCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecc
Q 001248 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1114)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~ 574 (1114)
-+.- ..++++.+ ...+..+.-+. .+..++|+|. .|.+||.....++..+.-....+.++.|+|-..
T Consensus 135 k~~~-~p~~tilg-~s~~~gIdh~~--~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvET-------- 200 (433)
T KOG0268|consen 135 KIDG-PPLHTILG-KSVYLGIDHHR--KNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVET-------- 200 (433)
T ss_pred eccC-Ccceeeec-ccccccccccc--ccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcc--------
Confidence 9764 46677653 34455555332 2357888775 489999987666666655555555555555443
Q ss_pred cceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccce
Q 001248 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 654 (1114)
Q Consensus 575 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~ 654 (1114)
..|++++.|+.|.+||++++.++..+...- .-+.++|+|.+-.++++++|..++.+|++.....+
T Consensus 201 ------------sILas~~sDrsIvLyD~R~~~Pl~KVi~~m---RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~ 265 (433)
T KOG0268|consen 201 ------------SILASCASDRSIVLYDLRQASPLKKVILTM---RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPL 265 (433)
T ss_pred ------------hheeeeccCCceEEEecccCCccceeeeec---cccceecCccccceeeccccccceehhhhhhcccc
Confidence 346777799999999999999888776443 35789999988889999999999999997664333
Q ss_pred eeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccC
Q 001248 655 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 734 (1114)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~ 734 (1114)
...
T Consensus 266 ~v~----------------------------------------------------------------------------- 268 (433)
T KOG0268|consen 266 NVH----------------------------------------------------------------------------- 268 (433)
T ss_pred hhh-----------------------------------------------------------------------------
Confidence 322
Q ss_pred CCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCC
Q 001248 735 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 814 (1114)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~ 814 (1114)
.+|...|.++.|||.|+-+++++-|.+|+||....... ..... +
T Consensus 269 -------------~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~S-------------------RdiYh---t- 312 (433)
T KOG0268|consen 269 -------------KDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHS-------------------RDIYH---T- 312 (433)
T ss_pred -------------cccceeEEEeccCCCcchhccccccceEEEeecCCCcc-------------------hhhhh---H-
Confidence 23777899999999999999999999999998653210 00000 0
Q ss_pred CCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCcc
Q 001248 815 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT 851 (1114)
Q Consensus 815 ~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~ 851 (1114)
..-..|.|+.||.|.+|+++|+ |+.|++|.....+.
T Consensus 313 -kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 313 -KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred -hhhheeeEEEEeccccEEEecCCCcceeeeecchhhh
Confidence 0124588999999999999999 79999999765443
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.4e-24 Score=239.86 Aligned_cols=235 Identities=14% Similarity=0.191 Sum_probs=179.6
Q ss_pred EecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCC-CCeEEEEeCCCeEEEEEccCCce-
Q 001248 377 GTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHGGDE- 454 (1114)
Q Consensus 377 g~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~las~~~dg~i~iwd~~~~~~- 454 (1114)
|+.++.|.+|+......+. .+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++..
T Consensus 50 GG~~gvI~L~~~~r~~~v~-------------------~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~ 110 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVI-------------------KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES 110 (568)
T ss_pred CCceeEEEeeecCCCceEE-------------------EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence 4456677777765543322 47899999999999996 89999999999999999986432
Q ss_pred e----eeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEe
Q 001248 455 V----RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA 530 (1114)
Q Consensus 455 ~----~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~ 530 (1114)
. .....+.+|...|.+++|+|++.. ++++++.|++|+|||+.+++.+..+. |...|.+++|++ +|.+|++++
T Consensus 111 ~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswsp--dG~lLat~s 186 (568)
T PTZ00420 111 VKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNI--KGNLLSGTC 186 (568)
T ss_pred ccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECC--CCCEEEEEe
Confidence 1 122357899999999999999885 56899999999999999998887776 667899999865 567999999
Q ss_pred cCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCC----eEEEEECCC-
Q 001248 531 LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF----SIKFWDMDS- 605 (1114)
Q Consensus 531 ~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~- 605 (1114)
.|+.|++||+++......+..|.+.+....+ ....|+++++++++++.++ .|++||++.
T Consensus 187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v----------------~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~ 250 (568)
T PTZ00420 187 VGKHMHIIDPRKQEIASSFHIHDGGKNTKNI----------------WIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT 250 (568)
T ss_pred cCCEEEEEECCCCcEEEEEecccCCceeEEE----------------EeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC
Confidence 9999999999988777777666654432221 2233556777889887664 799999985
Q ss_pred cceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 606 VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 606 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
++++..+..+.....+......++|.++++|+.|+.|++|++..+
T Consensus 251 ~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 251 TSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred CCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 666766655544333333334456899999999999999999765
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=222.86 Aligned_cols=268 Identities=14% Similarity=0.228 Sum_probs=217.2
Q ss_pred eeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC
Q 001248 351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1114)
Q Consensus 351 ~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1114)
....+.|.++|+.+.+-|....|+|+++..+.|.|||+.+-...... .+.-.+...+.||...=..++|++
T Consensus 117 i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~---------~~~~~Pdl~L~gH~~eg~glsWn~ 187 (422)
T KOG0264|consen 117 ISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA---------SGECRPDLRLKGHEKEGYGLSWNR 187 (422)
T ss_pred EEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc---------cccCCCceEEEeeccccccccccc
Confidence 44567799999999999999999999999999999999764332210 001122235889999888899999
Q ss_pred -CCCeEEEEeCCCeEEEEEccCCce----eeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCC--CCccee
Q 001248 431 -DGSLFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT--NGAKQY 503 (1114)
Q Consensus 431 -dg~~las~~~dg~i~iwd~~~~~~----~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~--~~~~~~ 503 (1114)
..-+|++++.|++|++||+..... +.....+.+|...|..++|.+-... +|++++.|+.+.|||++ +.++..
T Consensus 188 ~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~~ 266 (422)
T KOG0264|consen 188 QQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPSH 266 (422)
T ss_pred ccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCcc
Confidence 455789999999999999985433 5556678999999999999998877 79999999999999999 566677
Q ss_pred EeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCC-CeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEe
Q 001248 504 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 582 (1114)
Q Consensus 504 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~ 582 (1114)
...+|.++|+|++|++.. +.+|++|+.|++|.+||+++.. ++..+..|...|..+.|+|...
T Consensus 267 ~~~ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~e---------------- 329 (422)
T KOG0264|consen 267 SVKAHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNE---------------- 329 (422)
T ss_pred cccccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCC----------------
Confidence 888999999999998876 4799999999999999999875 4558888888899998888765
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCcce------------EEEeccCCCCCCcCeEEEcCCCC-EEEEEeCCCcEEEEEccC
Q 001248 583 DTTKNRFLAAGDDFSIKFWDMDSVQL------------LTSIDADGGLPASPRIRFNKDGC-LLAVSTNDNGIKILATSD 649 (1114)
Q Consensus 583 ~~~~~~l~~~~~dg~i~iwd~~~~~~------------~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~dg~i~iwd~~~ 649 (1114)
..|++++.|+.+.+||+..-.. ...|...+|...|..+.|+|... .+++.++|+.+.||.+..
T Consensus 330 ----tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 330 ----TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ----ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 3588899999999999864221 22344556677899999999665 567789999999998764
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-24 Score=210.29 Aligned_cols=201 Identities=14% Similarity=0.243 Sum_probs=171.4
Q ss_pred CCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc-eE
Q 001248 817 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EV 894 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~-~~ 894 (1114)
|...|.+..|-..|+.+++++ |.+..+||++++..+..+.+|..+.+.++-+| ..+++++.+.|.+.++||+... ..
T Consensus 271 H~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI~s 349 (481)
T KOG0300|consen 271 HRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAIQS 349 (481)
T ss_pred cccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cceEEEEeccCceeEeccchhhcce
Confidence 889999999999999999999 99999999999999999999999999999999 8999999999999999999853 45
Q ss_pred EEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCC
Q 001248 895 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HET 973 (1114)
Q Consensus 895 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~ 973 (1114)
+..|+||.+.|+++.|..| ..+++|+.|.+|+|||+.+-.. .+.... ...++..++.+..+..++.- .+.
T Consensus 350 V~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRs----plATIR----tdS~~NRvavs~g~~iIAiPhDNR 420 (481)
T KOG0300|consen 350 VAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRS----PLATIR----TDSPANRVAVSKGHPIIAIPHDNR 420 (481)
T ss_pred eeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccC----cceeee----cCCccceeEeecCCceEEeccCCc
Confidence 6889999999999999876 5699999999999999987332 122111 12478999999999999994 667
Q ss_pred eEEEEEcCCCceeeee--ecCCCCcCeeEEEECCCCC--EEEEEEcCCeEEEEEcCCC
Q 001248 974 QLAIFETTKLECVKQW--VPRESSAPITHATFSCDSQ--LVYACFLDATVCVFSAANL 1027 (1114)
Q Consensus 974 ~i~iwd~~~~~~~~~~--~~~~h~~~v~~l~~s~dg~--~l~s~s~Dg~I~vwd~~~~ 1027 (1114)
+|++||+......+.. ...+|...|+|.+|+.+.- -|++++.|..+.=|.+.+.
T Consensus 421 qvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 421 QVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred eEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 9999999877655544 3458999999999987654 3889999999999998754
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-24 Score=229.14 Aligned_cols=240 Identities=18% Similarity=0.299 Sum_probs=204.1
Q ss_pred eEecc-CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeE-EEEc
Q 001248 352 TRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR-VIWS 429 (1114)
Q Consensus 352 ~~~~~-h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~-l~~s 429 (1114)
.+.+. |...|..+++.+... +++++.||++++|+-..++.+.. +.+.+|.+-|.+ +++-
T Consensus 7 s~~l~gH~~DVr~v~~~~~~~--i~s~sRd~t~~vw~~~~~~~l~~-----------------~~~~~~~g~i~~~i~y~ 67 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTDGVC--IISGSRDGTVKVWAKKGKQYLET-----------------HAFEGPKGFIANSICYA 67 (745)
T ss_pred EEEeccCccchheeEecCCeE--EeecCCCCceeeeeccCcccccc-----------------eecccCcceeeccceec
Confidence 34444 999999999888774 88999999999999765554431 246678888887 8887
Q ss_pred C-CCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeecc
Q 001248 430 P-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH 508 (1114)
Q Consensus 430 p-dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h 508 (1114)
+ |+-+|++|+.|.+|.+|...+...+. +|.+|...|.++....++. ++|||-|.++++|- .+++...+.+|
T Consensus 68 e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~--~~~l~~~l~gH 139 (745)
T KOG0301|consen 68 ESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR--IGELVYSLQGH 139 (745)
T ss_pred cccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec--chhhhcccCCc
Confidence 6 55669999999999999999988665 8999999999999887775 89999999999996 46777889999
Q ss_pred ccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCE
Q 001248 509 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 588 (1114)
Q Consensus 509 ~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~ 588 (1114)
...|+++...+. +.++||+.|++|++|.- ++...++.+|...|..+++-+++.
T Consensus 140 ~asVWAv~~l~e---~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~---------------------- 192 (745)
T KOG0301|consen 140 TASVWAVASLPE---NTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH---------------------- 192 (745)
T ss_pred chheeeeeecCC---CcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC----------------------
Confidence 999999986544 38999999999999965 567778899999999999999876
Q ss_pred EEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEcc
Q 001248 589 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 648 (1114)
Q Consensus 589 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~ 648 (1114)
+++++.||.|+.|++ +|+++..+.+| ...+.+++...++..++++++|++++||+..
T Consensus 193 flScsNDg~Ir~w~~-~ge~l~~~~gh--tn~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 193 FLSCSNDGSIRLWDL-DGEVLLEMHGH--TNFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred eEeecCCceEEEEec-cCceeeeeecc--ceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 999999999999999 78888877655 5578999988889999999999999999865
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-22 Score=223.63 Aligned_cols=517 Identities=15% Similarity=0.182 Sum_probs=326.5
Q ss_pred eEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCe-eEEEEecCCCCEEEEeCCCCcce
Q 001248 424 NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ-LCVITCGDDKTIKVWDATNGAKQ 502 (1114)
Q Consensus 424 ~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~-~~l~s~~~d~~i~iwd~~~~~~~ 502 (1114)
..-.||+|+++++.... ..|.||...+|.++. .+.+|..++..+.+.|.... .++++++.||+|++||...+.++
T Consensus 20 ~~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Ll 95 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCTG-NFVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELL 95 (792)
T ss_pred cccccccCCcEEEEeeC-CEEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEE
Confidence 33569999999988764 569999999999887 79999999999999987663 47889999999999999999999
Q ss_pred eEeeccccCEEEEeeccC--CCceEEEEEe-cCCeE-EEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeeccccee
Q 001248 503 YIFEGHEAPVYSVCPHHK--ENIQFIFSTA-LDGKI-KAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG 578 (1114)
Q Consensus 503 ~~~~~h~~~v~~~~~~~~--~~~~~l~s~~-~d~~i-~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~ 578 (1114)
+++..+ .++.++.+.+. .. ...+..+ .|..+ .....+..+ ......-..+...-..+...+. .-.
T Consensus 96 kt~~~~-~~v~~~~~~~~~a~~-s~~~~~s~~~~~~~~~~s~~~~~-------q~~~~~~~t~~~~~~d~~~~~~--~~~ 164 (792)
T KOG1963|consen 96 KTFDNN-LPVHALVYKPAQADI-SANVYVSVEDYSILTTFSKKLSK-------QSSRFVLATFDSAKGDFLKEHQ--EPK 164 (792)
T ss_pred EEEecC-CceeEEEechhHhCc-cceeEeecccceeeeeccccccc-------ceeeeEeeeccccchhhhhhhc--CCc
Confidence 988744 33333322110 10 1122111 11111 000000000 0000000000000000001110 123
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEECCCcceEEEe--ccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceee
Q 001248 579 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI--DADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRT 656 (1114)
Q Consensus 579 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~ 656 (1114)
++.+++.+.+ .....+..+.+|+..++...... ....|...+++.+++|.++++++|..||.|.+|.-....
T Consensus 165 ~I~~~~~ge~-~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~----- 238 (792)
T KOG1963|consen 165 SIVDNNSGEF-KGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSS----- 238 (792)
T ss_pred cEEEcCCceE-EEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccc-----
Confidence 4555555554 44445667889998775511111 111233447899999999999999999999999632210
Q ss_pred ccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCC
Q 001248 657 FENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSE 736 (1114)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~ 736 (1114)
.. +...++.-|
T Consensus 239 --~~------------------------------------------------------------~~t~t~lHW------- 249 (792)
T KOG1963|consen 239 --DD------------------------------------------------------------SETCTLLHW------- 249 (792)
T ss_pred --cc------------------------------------------------------------cccceEEEe-------
Confidence 00 000122223
Q ss_pred CccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCC
Q 001248 737 PNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSN 816 (1114)
Q Consensus 737 ~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~ 816 (1114)
|...|.+++|+++|.+|++|+.+|.+.+|.+.++ . ...++.
T Consensus 250 -------------H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~----------------------~--kqfLPR-- 290 (792)
T KOG1963|consen 250 -------------HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETG----------------------K--KQFLPR-- 290 (792)
T ss_pred -------------cccccceeEEecCCceEeecccceEEEEEeecCC----------------------C--cccccc--
Confidence 6789999999999999999999999999877532 2 111222
Q ss_pred CCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCC-----------CCCeEEEEEecCCCcEEEEEeCCCcE
Q 001248 817 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP-----------PPAATFLAFHPQDNNIIAIGMDDSSI 884 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~-----------~~~i~~l~~sp~d~~~la~g~~dg~v 884 (1114)
..++|..+.+|||+.+.+... |+.|.+....+.....++.+. .+-.+.++++| ..+.++..+..|.|
T Consensus 291 Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~v 369 (792)
T KOG1963|consen 291 LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHV 369 (792)
T ss_pred cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceE
Confidence 578899999999999888777 999999988776655554432 23367788999 77788888999999
Q ss_pred EEEEcccceEEEeec-----------ccccCeeEEEEcCCCCEEEEEeC--------CC--cEEEEeCCCCccccccccc
Q 001248 885 QIYNVRVDEVKSKLK-----------GHSKRITGLAFSHALNVLVSSGA--------DS--QLCVWSSDGWEKQKNRFLQ 943 (1114)
Q Consensus 885 ~iwd~~~~~~~~~l~-----------~h~~~V~~l~~s~d~~~l~s~s~--------D~--~v~iwd~~~~~~~~~~~~~ 943 (1114)
.+||+.+.+.+..+. .+.-.|++++.+-.|.+++|.-. || .+++|-.......-.....
T Consensus 370 Q~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~ 449 (792)
T KOG1963|consen 370 QFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTK 449 (792)
T ss_pred EEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEE
Confidence 999999877665542 13345788888888999998632 33 4789987765543322223
Q ss_pred cCCCCCCCCCCceEEEE-ccCCc-EEEE-EeCCeEEEEEcCCCcee--------eeeecCCCCcCeeEEEECCCCCEEEE
Q 001248 944 IPTGRTPTAQSDTRVQF-HQDQI-HFLV-VHETQLAIFETTKLECV--------KQWVPRESSAPITHATFSCDSQLVYA 1012 (1114)
Q Consensus 944 ~~~~~~~~~~~i~~v~f-spdg~-~l~~-~~d~~i~iwd~~~~~~~--------~~~~~~~h~~~v~~l~~s~dg~~l~s 1012 (1114)
+...|.. .....+| ++... .+++ +.||.+++|-....+-+ ......-|..++++++||.||..|++
T Consensus 450 I~~PH~~---~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~ 526 (792)
T KOG1963|consen 450 INNPHGN---AFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAV 526 (792)
T ss_pred EecCCCc---eeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEE
Confidence 3333322 3333333 33332 5555 69999999988433211 11112246889999999999977765
Q ss_pred EEcCCeEEEEEcCC-CeeeEEeCCCcccCCCCCCCCccceEEEecCC-CCCeEEEEeCCCcEEEEeccCCCCcc
Q 001248 1013 CFLDATVCVFSAAN-LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ-EPNEFALGLSDGGVHVFEPLESEGKW 1084 (1114)
Q Consensus 1013 ~s~Dg~I~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-d~~~l~s~~~Dg~v~vW~i~~~~~~~ 1084 (1114)
+ .|++|.+||..+ .++.+... ....+.+ .+.|..+ .....++....+.+.+|++.+..-.|
T Consensus 527 s-~~~~Itiwd~~~~~~l~~~~~-~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 527 S-FDDTITIWDYDTKNELLCTEG-SRNWPIA---------ELLFTAQTQNDGALVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred e-cCCEEEEecCCChhhhhcccc-ccccchH---------hHhhhcccccccceeeccCceEehHhhhhhheec
Confidence 4 689999999999 55555444 2222222 1222210 12234455568899999999988666
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=213.15 Aligned_cols=281 Identities=20% Similarity=0.282 Sum_probs=227.2
Q ss_pred CeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCe
Q 001248 467 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR 546 (1114)
Q Consensus 467 ~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 546 (1114)
.+.++...+... .+++|+.|.++.++|..+++.+.+++||...|+.+.+++.. ..+++++.|..|++|........
T Consensus 221 gi~ald~~~s~~--~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~--~~v~~aSad~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 221 GITALDIIPSSS--KILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDL--DTVITASADEIIRVWSVPLSSEP 296 (506)
T ss_pred CeeEEeecCCCC--cceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccch--hheeecCCcceEEeeccccccCc
Confidence 577788877744 68999999999999999999999999999999999987765 58999999999999998877766
Q ss_pred eeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEE
Q 001248 547 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRF 626 (1114)
Q Consensus 547 ~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 626 (1114)
.....|..+|+.+...|.| .||++++.|++..+.|++++..+...........+++.+|
T Consensus 297 ~~~~~h~~~V~~ls~h~tg---------------------eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~f 355 (506)
T KOG0289|consen 297 TSSRPHEEPVTGLSLHPTG---------------------EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAF 355 (506)
T ss_pred cccccccccceeeeeccCC---------------------cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeE
Confidence 6666666666665555554 5899999999999999999998888766544456899999
Q ss_pred cCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCC
Q 001248 627 NKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNG 706 (1114)
Q Consensus 627 s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (1114)
+|||.++.+|+.||.++|||+.++. ....
T Consensus 356 HpDgLifgtgt~d~~vkiwdlks~~-~~a~-------------------------------------------------- 384 (506)
T KOG0289|consen 356 HPDGLIFGTGTPDGVVKIWDLKSQT-NVAK-------------------------------------------------- 384 (506)
T ss_pred cCCceEEeccCCCceEEEEEcCCcc-cccc--------------------------------------------------
Confidence 9999999999999999999987661 1111
Q ss_pred CccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccC
Q 001248 707 DVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERN 786 (1114)
Q Consensus 707 ~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~ 786 (1114)
T Consensus 385 -------------------------------------------------------------------------------- 384 (506)
T KOG0289|consen 385 -------------------------------------------------------------------------------- 384 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCC-CCCeEE
Q 001248 787 SSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP-PPAATF 864 (1114)
Q Consensus 787 ~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~-~~~i~~ 864 (1114)
+. +|.++|.+++|+.||-|||++. |+.|++||++..+...++... ..++.+
T Consensus 385 -------------------------Fp--ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s 437 (506)
T KOG0289|consen 385 -------------------------FP--GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNS 437 (506)
T ss_pred -------------------------CC--CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeecccccccee
Confidence 11 1666777777777777777777 566888887766666665433 237999
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEEcc--cceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001248 865 LAFHPQDNNIIAIGMDDSSIQIYNVR--VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 931 (1114)
Q Consensus 865 l~~sp~d~~~la~g~~dg~v~iwd~~--~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~ 931 (1114)
+.|.+ .|.+|++++.|=+|++++-. .+.++..+..|.+..+++.|....++++++|.|..++++.+
T Consensus 438 ~~fD~-SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 438 LSFDQ-SGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EEEcC-CCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 99999 89999999888666666633 46788899999999999999999999999999999988754
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=224.87 Aligned_cols=276 Identities=14% Similarity=0.235 Sum_probs=224.4
Q ss_pred cccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccE-EEE
Q 001248 748 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC-FAL 826 (1114)
Q Consensus 748 ~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~-v~~ 826 (1114)
.+|...|..+++.+.. .+++++.||++++|+-..... .-...+. +|.+.|.+ +++
T Consensus 11 ~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~---------------------l~~~~~~--~~~g~i~~~i~y 66 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQY---------------------LETHAFE--GPKGFIANSICY 66 (745)
T ss_pred ccCccchheeEecCCe-EEeecCCCCceeeeeccCccc---------------------ccceecc--cCcceeecccee
Confidence 4688889888877665 589999999999997532111 0001111 25555555 777
Q ss_pred ee-CCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccC
Q 001248 827 SK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR 904 (1114)
Q Consensus 827 s~-d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~ 904 (1114)
-+ ++-.+++|+ |.+|.+|......++.++.+|...|.+++... ++. +++|+.|.++++|-. +++...+.+|...
T Consensus 67 ~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~as 142 (745)
T KOG0301|consen 67 AESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHTAS 142 (745)
T ss_pred ccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcchh
Confidence 65 444577777 99999999999999999999999999999776 565 999999999999976 4667779999999
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCCc
Q 001248 905 ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLE 984 (1114)
Q Consensus 905 V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~ 984 (1114)
|+++++-|++ .++|||.|.+|++|.-.+ .++.+.+|.. .|+.+++-+++.+|-++.||.|+.|++ +|+
T Consensus 143 VWAv~~l~e~-~~vTgsaDKtIklWk~~~-------~l~tf~gHtD---~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge 210 (745)
T KOG0301|consen 143 VWAVASLPEN-TYVTGSADKTIKLWKGGT-------LLKTFSGHTD---CVRGLAVLDDSHFLSCSNDGSIRLWDL-DGE 210 (745)
T ss_pred eeeeeecCCC-cEEeccCcceeeeccCCc-------hhhhhccchh---heeeeEEecCCCeEeecCCceEEEEec-cCc
Confidence 9999999987 899999999999998755 6788888875 899999999999999999999999999 788
Q ss_pred eeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEE
Q 001248 985 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA 1064 (1114)
Q Consensus 985 ~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~ 1064 (1114)
++.... +|..-|+++...++++.++++++|++++||+.. ++...+. +|. ..++ ++.+.+ +| -|+
T Consensus 211 ~l~~~~--ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~----lPt----tsiW--sa~~L~-Ng-DIv 274 (745)
T KOG0301|consen 211 VLLEMH--GHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVIT----LPT----TSIW--SAKVLL-NG-DIV 274 (745)
T ss_pred eeeeee--ccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEe----cCc----cceE--EEEEee-CC-CEE
Confidence 877765 999999999999999999999999999999987 5565555 332 2355 666665 23 488
Q ss_pred EEeCCCcEEEEeccC
Q 001248 1065 LGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1065 s~~~Dg~v~vW~i~~ 1079 (1114)
+|++||-||||....
T Consensus 275 vg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 275 VGGSDGRVRVFTVDK 289 (745)
T ss_pred EeccCceEEEEEecc
Confidence 899999999999873
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-24 Score=214.28 Aligned_cols=243 Identities=17% Similarity=0.237 Sum_probs=194.8
Q ss_pred EeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCC
Q 001248 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1114)
.+-+|.+.|.|++=+|..--.+|+|+.||.|+|||+...+++. .+..|.+.|..|++..
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~-------------------~f~AH~G~V~Gi~v~~-- 119 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR-------------------TFKAHEGLVRGICVTQ-- 119 (433)
T ss_pred hccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh-------------------eeecccCceeeEEecc--
Confidence 3345999999999999884359999999999999999887765 4789999999999987
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCE
Q 001248 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 512 (1114)
Q Consensus 433 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 512 (1114)
..+++++.|.+|+.|.+... ..+ ++.+ ...+..+.-...+. .++|||. .|.|||.+...++..+.-....|
T Consensus 120 ~~~~tvgdDKtvK~wk~~~~-p~~---tilg-~s~~~gIdh~~~~~--~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti 190 (433)
T KOG0268|consen 120 TSFFTVGDDKTVKQWKIDGP-PLH---TILG-KSVYLGIDHHRKNS--VFATCGE--QIDIWDEQRDNPVSSMSWGADSI 190 (433)
T ss_pred cceEEecCCcceeeeeccCC-cce---eeec-cccccccccccccc--cccccCc--eeeecccccCCccceeecCCCce
Confidence 77889999999999998863 232 3433 34566676666666 6889886 58999999999999998888899
Q ss_pred EEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEE
Q 001248 513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 592 (1114)
Q Consensus 513 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~ 592 (1114)
.++.|++... .+|++++.|+.|.+||++...++....... ..+.++|+|..--++++
T Consensus 191 ~svkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~~m----------------------RTN~IswnPeafnF~~a 247 (433)
T KOG0268|consen 191 SSVKFNPVET-SILASCASDRSIVLYDLRQASPLKKVILTM----------------------RTNTICWNPEAFNFVAA 247 (433)
T ss_pred eEEecCCCcc-hheeeeccCCceEEEecccCCccceeeeec----------------------cccceecCccccceeec
Confidence 9999988765 689999999999999999877665332111 22345666655568889
Q ss_pred eCCCeEEEEECCCcc-eEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 593 GDDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 593 ~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
++|..++.||++... ++.....| ...|.++.|||.|+-+++|+.|.+|+||....+
T Consensus 248 ~ED~nlY~~DmR~l~~p~~v~~dh--vsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 248 NEDHNLYTYDMRNLSRPLNVHKDH--VSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred cccccceehhhhhhcccchhhccc--ceeEEEeccCCCcchhccccccceEEEeecCCC
Confidence 999999999987643 44455544 557999999999999999999999999988765
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-22 Score=196.57 Aligned_cols=247 Identities=16% Similarity=0.268 Sum_probs=195.6
Q ss_pred eeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEE
Q 001248 457 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIK 536 (1114)
Q Consensus 457 ~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~ 536 (1114)
+...+..|.++|+++|.+ +. ++++||.|-+|+|||+.+...+..+-.|.+.|+++.|.+......|++|+.||.|.
T Consensus 35 ~lF~~~aH~~sitavAVs--~~--~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~ 110 (362)
T KOG0294|consen 35 PLFAFSAHAGSITALAVS--GP--YVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHII 110 (362)
T ss_pred ccccccccccceeEEEec--ce--eEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEE
Confidence 455678999999999996 66 89999999999999999999999999999999999987665445899999999999
Q ss_pred EEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCC
Q 001248 537 AWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG 616 (1114)
Q Consensus 537 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 616 (1114)
+|+...-.....+..|.+.|+.+++.|.|+ .-++.+.|+.++.||+-+|+.-..+....
T Consensus 111 iw~~~~W~~~~slK~H~~~Vt~lsiHPS~K---------------------LALsVg~D~~lr~WNLV~Gr~a~v~~L~~ 169 (362)
T KOG0294|consen 111 IWRVGSWELLKSLKAHKGQVTDLSIHPSGK---------------------LALSVGGDQVLRTWNLVRGRVAFVLNLKN 169 (362)
T ss_pred EEEcCCeEEeeeecccccccceeEecCCCc---------------------eEEEEcCCceeeeehhhcCccceeeccCC
Confidence 999998877778888887777777766665 67889999999999999988766665443
Q ss_pred CCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccc
Q 001248 617 GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAA 696 (1114)
Q Consensus 617 ~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1114)
. ...+.|+|.|.+++.+..+ .|-+|.+.+. ..+..+.
T Consensus 170 ~---at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A-~v~~~i~-------------------------------------- 206 (362)
T KOG0294|consen 170 K---ATLVSWSPQGDHFVVSGRN-KIDIYQLDNA-SVFREIE-------------------------------------- 206 (362)
T ss_pred c---ceeeEEcCCCCEEEEEecc-EEEEEecccH-hHhhhhh--------------------------------------
Confidence 2 3559999999988887764 6777766544 1111110
Q ss_pred cccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEE
Q 001248 697 SMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHL 776 (1114)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~ 776 (1114)
T Consensus 207 -------------------------------------------------------------------------------- 206 (362)
T KOG0294|consen 207 -------------------------------------------------------------------------------- 206 (362)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCcccccc
Q 001248 777 LWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATF 855 (1114)
Q Consensus 777 vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~ 855 (1114)
....+.|+.|. ++..|++|. |+.|.+||..+..+...+
T Consensus 207 ----------------------------------------~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~ 245 (362)
T KOG0294|consen 207 ----------------------------------------NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEF 245 (362)
T ss_pred ----------------------------------------ccccceeeeec-CCceEEEecCCceEEEeccCCCccceee
Confidence 11122333332 445666666 788999999998999999
Q ss_pred CCCCCCeEEEEEe-cCCCcEEEEEeCCCcEEEEEcccc
Q 001248 856 MPPPPAATFLAFH-PQDNNIIAIGMDDSSIQIYNVRVD 892 (1114)
Q Consensus 856 ~~~~~~i~~l~~s-p~d~~~la~g~~dg~v~iwd~~~~ 892 (1114)
.+|..+|..+.+- ..++.+|+++++||.|+|||+...
T Consensus 246 ~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 246 LAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 9999999999843 226789999999999999999865
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.8e-23 Score=209.80 Aligned_cols=271 Identities=15% Similarity=0.234 Sum_probs=205.8
Q ss_pred cccccCCCCcCCCCcCCCCCCCCCcc--eeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeee
Q 001248 325 PVSFTGHSHSHSHSQAFSTPEDLPKT--VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVW 402 (1114)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~ 402 (1114)
++.|+++.. .-..+|.. .+++|.|..-|.++.+|...++ +.||+ .|.|+|||+...... .
T Consensus 393 PvpfP~dal---------~g~gIPrharq~~tL~HGEvVcAvtIS~~trh-VyTgG-kgcVKVWdis~pg~k--~----- 454 (705)
T KOG0639|consen 393 PVPFPPDAL---------VGPGIPRHARQINTLAHGEVVCAVTISNPTRH-VYTGG-KGCVKVWDISQPGNK--S----- 454 (705)
T ss_pred CCCCCchhh---------cCCCCCchHHhhhhhccCcEEEEEEecCCcce-eEecC-CCeEEEeeccCCCCC--C-----
Confidence 567777543 12334443 4567789999999999999997 88886 689999999754211 0
Q ss_pred ccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEE
Q 001248 403 DLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCV 482 (1114)
Q Consensus 403 d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l 482 (1114)
+...--...-.+.|..+.++|||+.|++|+.-.++.|||+..... +...++..-.-..++++.+||.+ +.
T Consensus 455 -------PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTp-rikaeltssapaCyALa~spDak--vc 524 (705)
T KOG0639|consen 455 -------PVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDAK--VC 524 (705)
T ss_pred -------ccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCc-chhhhcCCcchhhhhhhcCCccc--ee
Confidence 111101223456899999999999999999999999999987542 22224444445678999999999 88
Q ss_pred EEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEe
Q 001248 483 ITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS 562 (1114)
Q Consensus 483 ~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s 562 (1114)
+++..||.|.|||+.+...++.|+||.+.+.|+.+ +.||..|.+|+.|++|+.||++.+.++...... ..|.+
T Consensus 525 FsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdi--s~dGtklWTGGlDntvRcWDlregrqlqqhdF~-SQIfS---- 597 (705)
T KOG0639|consen 525 FSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI--SKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFS-SQIFS---- 597 (705)
T ss_pred eeeccCCcEEEEEcccceeeecccCCCCCceeEEe--cCCCceeecCCCccceeehhhhhhhhhhhhhhh-hhhee----
Confidence 99999999999999999999999999999999986 456789999999999999999987665533221 23334
Q ss_pred cCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcE
Q 001248 563 ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGI 642 (1114)
Q Consensus 563 ~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i 642 (1114)
+.++|++.+++.|-+.+.+.+-..... ....+. -+...|.++.|.+-|+++++.+.|+.+
T Consensus 598 -----------------Lg~cP~~dWlavGMens~vevlh~skp-~kyqlh--lheScVLSlKFa~cGkwfvStGkDnlL 657 (705)
T KOG0639|consen 598 -----------------LGYCPTGDWLAVGMENSNVEVLHTSKP-EKYQLH--LHESCVLSLKFAYCGKWFVSTGKDNLL 657 (705)
T ss_pred -----------------cccCCCccceeeecccCcEEEEecCCc-cceeec--ccccEEEEEEecccCceeeecCchhhh
Confidence 445555668999999999988876443 333333 345579999999999999999999999
Q ss_pred EEEEccCC
Q 001248 643 KILATSDG 650 (1114)
Q Consensus 643 ~iwd~~~~ 650 (1114)
..|...-|
T Consensus 658 nawrtPyG 665 (705)
T KOG0639|consen 658 NAWRTPYG 665 (705)
T ss_pred hhccCccc
Confidence 99977655
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.6e-24 Score=197.83 Aligned_cols=256 Identities=18% Similarity=0.235 Sum_probs=205.7
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC--CCCe
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGSL 434 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~ 434 (1114)
|++.|-.+...--|++ |||++.|++|+|+.+..+.... ....|.||.++|+.++|.. -|.+
T Consensus 10 H~D~IHda~lDyygkr-lATcsSD~tVkIf~v~~n~~s~----------------ll~~L~Gh~GPVwqv~wahPk~G~i 72 (299)
T KOG1332|consen 10 HEDMIHDAQLDYYGKR-LATCSSDGTVKIFEVRNNGQSK----------------LLAELTGHSGPVWKVAWAHPKFGTI 72 (299)
T ss_pred hhhhhhHhhhhhhcce-eeeecCCccEEEEEEcCCCCce----------------eeeEecCCCCCeeEEeecccccCcE
Confidence 8888998988889997 9999999999999998765321 1125899999999999987 8999
Q ss_pred EEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCC-c--ceeEeeccccC
Q 001248 435 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-A--KQYIFEGHEAP 511 (1114)
Q Consensus 435 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~--~~~~~~~h~~~ 511 (1114)
||+++.||.|.||.-.+| ...+..+...|...|++++|.|.+-.+.|++++.||.|.|.+.++. . ..+....|.-.
T Consensus 73 LAScsYDgkVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~G 151 (299)
T KOG1332|consen 73 LASCSYDGKVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIG 151 (299)
T ss_pred eeEeecCceEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccc
Confidence 999999999999999888 4555667889999999999999988889999999999999988754 1 22345789999
Q ss_pred EEEEeeccCCC-c-----------eEEEEEecCCeEEEEEcCCCCCe--eeecCCCCeeEEEEEecCCCeEEeeecccce
Q 001248 512 VYSVCPHHKEN-I-----------QFIFSTALDGKIKAWLYDNLGSR--VDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 577 (1114)
Q Consensus 512 v~~~~~~~~~~-~-----------~~l~s~~~d~~i~~wd~~~~~~~--~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v 577 (1114)
|++++|.|..- | ..|++|+.|..|++|+.++..-. ..+..|.+.|..+++.|.-..
T Consensus 152 vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl---------- 221 (299)
T KOG1332|consen 152 VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGL---------- 221 (299)
T ss_pred cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCC----------
Confidence 99999987622 1 46999999999999999876322 357889999999999886421
Q ss_pred eEEEecCCCCEEEEEeCCCeEEEEECCCc--ceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEcc
Q 001248 578 GVVQFDTTKNRFLAAGDDFSIKFWDMDSV--QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 648 (1114)
Q Consensus 578 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~ 648 (1114)
-..++++++.||++.||..+.. .-..++. +.-...+..++||..|++|++++.|+.+.+|.-.
T Consensus 222 -------~~s~iAS~SqDg~viIwt~~~e~e~wk~tll-~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 222 -------PKSTIASCSQDGTVIIWTKDEEYEPWKKTLL-EEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred -------CceeeEEecCCCcEEEEEecCccCccccccc-ccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 1125999999999999986532 1111111 1223468899999999999999999999999644
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-22 Score=224.29 Aligned_cols=285 Identities=16% Similarity=0.187 Sum_probs=218.9
Q ss_pred ccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEee
Q 001248 749 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 828 (1114)
Q Consensus 749 ~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~ 828 (1114)
.|....+.++|.|+|..|++++.||.|++|+.......| ..+. .+...|.+++.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P------------------~ti~------~~g~~v~~ia~-- 64 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEP------------------ETID------ISGELVSSIAC-- 64 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCC------------------chhh------ccCceeEEEee--
Confidence 478889999999999999999999999999865321111 0110 04455666655
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeE
Q 001248 829 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG 907 (1114)
Q Consensus 829 d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 907 (1114)
++.+|++++ +++|.+|...+++.-..+....-++++++|+. +|+++|.|++|-.|++-++.+......+++|.++|.+
T Consensus 65 ~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~ 143 (933)
T KOG1274|consen 65 YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQ 143 (933)
T ss_pred cccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceee
Confidence 455888888 89999999998877656666677899999999 9999999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCCCcee
Q 001248 908 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECV 986 (1114)
Q Consensus 908 l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~~~~~ 986 (1114)
|.|+|.+.+||+.+.||.|+||++.++....................+..++|+|+|..+++ +.|+.|++|+..+.+..
T Consensus 144 l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~ 223 (933)
T KOG1274|consen 144 LSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQ 223 (933)
T ss_pred eeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeh
Confidence 99999999999999999999999998654332111111111111235678999999555555 89999999999999998
Q ss_pred eeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEE
Q 001248 987 KQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG 1066 (1114)
Q Consensus 987 ~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~ 1066 (1114)
..+..+.|...+..++|||+|+|||+++.||.|.|||+++-+. +.+ ...|. +++|.|+ ++-|-.-
T Consensus 224 f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-~~~-----------~~~Vc--~~aw~p~-~n~it~~ 288 (933)
T KOG1274|consen 224 FKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-HEF-----------KRAVC--CEAWKPN-ANAITLI 288 (933)
T ss_pred eeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-ccc-----------cceeE--EEecCCC-CCeeEEE
Confidence 8888777777799999999999999999999999999997221 111 11144 7888884 5554444
Q ss_pred eCCCcEEEE
Q 001248 1067 LSDGGVHVF 1075 (1114)
Q Consensus 1067 ~~Dg~v~vW 1075 (1114)
..-|...+|
T Consensus 289 ~~~g~~~~~ 297 (933)
T KOG1274|consen 289 TALGTLGVS 297 (933)
T ss_pred eeccccccC
Confidence 444544444
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.5e-23 Score=211.89 Aligned_cols=282 Identities=12% Similarity=0.179 Sum_probs=223.9
Q ss_pred cccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeC
Q 001248 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d 829 (1114)
|..-|..+.+|...+.+.+++. |.|+|||+....... .+. .+.......-|+++.+.||
T Consensus 418 HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~-------------------Pvs-qLdcl~rdnyiRSckL~pd 476 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKS-------------------PVS-QLDCLNRDNYIRSCKLLPD 476 (705)
T ss_pred cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCC-------------------ccc-cccccCcccceeeeEecCC
Confidence 7777888889888887777664 689999987532110 000 0111125677899999999
Q ss_pred CCEEEEEe-CCeEEEEEcCCCccc--cccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCee
Q 001248 830 DSYVMSAS-GGKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT 906 (1114)
Q Consensus 830 ~~~l~~~~-dg~i~iwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~ 906 (1114)
|+.|++|+ -.++.|||+...... ..+......+.+++.+| |.++.+++..||.|.|||+....+++.|+||.+.+.
T Consensus 477 grtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGas 555 (705)
T KOG0639|consen 477 GRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS 555 (705)
T ss_pred CceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCce
Confidence 99999999 689999999865543 33444445688899999 999999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCeEEEEEcCCCce
Q 001248 907 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC 985 (1114)
Q Consensus 907 ~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~i~iwd~~~~~~ 985 (1114)
||..++||..|-+|+-|.+|+-||+..+...... + ....|.++-.+|.+.+|+++ .++.+.|......+.
T Consensus 556 cIdis~dGtklWTGGlDntvRcWDlregrqlqqh-----d----F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k 626 (705)
T KOG0639|consen 556 CIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH-----D----FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK 626 (705)
T ss_pred eEEecCCCceeecCCCccceeehhhhhhhhhhhh-----h----hhhhheecccCCCccceeeecccCcEEEEecCCccc
Confidence 9999999999999999999999999985442211 1 11468899999999999997 567788887765444
Q ss_pred eeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEE
Q 001248 986 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1065 (1114)
Q Consensus 986 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s 1065 (1114)
+..+-|.+.|.++.|++.|+++++.+.|..+-.|...-|..+.+.+ +...|. ++..+. |.++|||
T Consensus 627 ---yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk---------E~SsVl--sCDIS~-ddkyIVT 691 (705)
T KOG0639|consen 627 ---YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK---------ESSSVL--SCDISF-DDKYIVT 691 (705)
T ss_pred ---eeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc---------ccCcce--eeeecc-CceEEEe
Confidence 2334689999999999999999999999999999999999887655 122244 666666 5699999
Q ss_pred EeCCCcEEEEec
Q 001248 1066 GLSDGGVHVFEP 1077 (1114)
Q Consensus 1066 ~~~Dg~v~vW~i 1077 (1114)
|+.|...-|+.+
T Consensus 692 GSGdkkATVYeV 703 (705)
T KOG0639|consen 692 GSGDKKATVYEV 703 (705)
T ss_pred cCCCcceEEEEE
Confidence 999998888876
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-23 Score=193.92 Aligned_cols=222 Identities=20% Similarity=0.278 Sum_probs=179.6
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecC--CCCeeEEEEecCCCCEE
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH--PNKQLCVITCGDDKTIK 492 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~--d~~~~~l~s~~~d~~i~ 492 (1114)
+...|.+.|..+...--|++||+++.|++|+|+.+..+.......+|.||.++|..++|.. .|. +|++++.||.|.
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVI 83 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVI 83 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEE
Confidence 4678999999998888899999999999999999998776667779999999999999987 677 899999999999
Q ss_pred EEeCCCCc--ceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCC---eeeecCCCCeeEEEEEecC---
Q 001248 493 VWDATNGA--KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS---RVDYEAPGRWCTTMAYSAD--- 564 (1114)
Q Consensus 493 iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~--- 564 (1114)
||.-++|+ ..+....|...|++++|.|..-|-.|++++.||.|.+.+++.... ......|.-.|.++++.|.
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP 163 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence 99977774 345667899999999999999999999999999999999887621 2244567778899999886
Q ss_pred CCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCC----CEEEEEeCCC
Q 001248 565 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG----CLLAVSTNDN 640 (1114)
Q Consensus 565 g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~----~~l~~~~~dg 640 (1114)
|...-++... .-..|++|+.|+.|+||+...++-+..-...+|.+.|+.++|.|.- .+|++++.||
T Consensus 164 g~~~~~~~~~----------~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg 233 (299)
T KOG1332|consen 164 GSLVDQGPAA----------KVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDG 233 (299)
T ss_pred ccccccCccc----------ccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCC
Confidence 3211111111 0146999999999999999887533332234557789999999953 5799999999
Q ss_pred cEEEEEcc
Q 001248 641 GIKILATS 648 (1114)
Q Consensus 641 ~i~iwd~~ 648 (1114)
++.||...
T Consensus 234 ~viIwt~~ 241 (299)
T KOG1332|consen 234 TVIIWTKD 241 (299)
T ss_pred cEEEEEec
Confidence 99999765
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-20 Score=209.83 Aligned_cols=513 Identities=13% Similarity=0.145 Sum_probs=317.6
Q ss_pred eEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCC---CeEEEE
Q 001248 362 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG---SLFGVA 438 (1114)
Q Consensus 362 ~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg---~~las~ 438 (1114)
....||+|++++++. .+..|.||...+|+++. .+.+|..++..+.+.|.. .++.++
T Consensus 20 ~~avfSnD~k~l~~~--~~~~V~VyS~~Tg~~i~-------------------~l~~~~a~l~s~~~~~~~~~~~~~~~~ 78 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLC--TGNFVKVYSTATGECIT-------------------SLEDHTAPLTSVIVLPSSENANYLIVC 78 (792)
T ss_pred cccccccCCcEEEEe--eCCEEEEEecchHhhhh-------------------hcccccCccceeeecCCCccceEEEEE
Confidence 456799999975543 47899999999999876 588999999999998854 467789
Q ss_pred eCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecC----CCCe--------eEEEEecCC--CCEEEEeCCCC--cce
Q 001248 439 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH----PNKQ--------LCVITCGDD--KTIKVWDATNG--AKQ 502 (1114)
Q Consensus 439 ~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~----d~~~--------~~l~s~~~d--~~i~iwd~~~~--~~~ 502 (1114)
+.||.|++||...+..++ ++.. ..++..+.+.| .... ..+.+.+.+ ++++-+.+.+- ...
T Consensus 79 sl~G~I~vwd~~~~~Llk---t~~~-~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~ 154 (792)
T KOG1963|consen 79 SLDGTIRVWDWSDGELLK---TFDN-NLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKG 154 (792)
T ss_pred ecCccEEEecCCCcEEEE---EEec-CCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccch
Confidence 999999999999988765 3322 22333333321 1110 011111111 11111111110 011
Q ss_pred eEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEe
Q 001248 503 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 582 (1114)
Q Consensus 503 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~ 582 (1114)
..+.+|.. -.++...+.. .+.....+..+.+|+..... ... .. +-..-++...+.+.++
T Consensus 155 d~~~~~~~-~~~I~~~~~g---e~~~i~~~~~~~~~~v~~~~-~~~-~~---------------~~~~~~Htf~~t~~~~ 213 (792)
T KOG1963|consen 155 DFLKEHQE-PKSIVDNNSG---EFKGIVHMCKIHIYFVPKHT-KHT-SS---------------RDITVHHTFNITCVAL 213 (792)
T ss_pred hhhhhhcC-CccEEEcCCc---eEEEEEEeeeEEEEEecccc-eee-cc---------------chhhhhhcccceeEEe
Confidence 11222322 2233333332 34444456678888876543 110 00 0011112223677888
Q ss_pred cCCCCEEEEEeCCCeEEEEECCC--cceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeecccc
Q 001248 583 DTTKNRFLAAGDDFSIKFWDMDS--VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL 660 (1114)
Q Consensus 583 ~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 660 (1114)
+|.+++++++..||.|.+|.--. +.....-..|.|...|.+++|+++|.+|++|+.+|.+.+|.+.++++.+ +
T Consensus 214 spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqf--L--- 288 (792)
T KOG1963|consen 214 SPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQF--L--- 288 (792)
T ss_pred ccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCccc--c---
Confidence 88888999999999999997433 3333333345666789999999999999999999999999998884211 1
Q ss_pred ccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccc
Q 001248 661 AYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQC 740 (1114)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~ 740 (1114)
T Consensus 289 -------------------------------------------------------------------------------- 288 (792)
T KOG1963|consen 289 -------------------------------------------------------------------------------- 288 (792)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCC
Q 001248 741 RSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEA 820 (1114)
Q Consensus 741 ~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~ 820 (1114)
| .-...|..+.++||+.......+|+.|.+-....-+.... +.-..+.+.... ....+-
T Consensus 289 -----P--RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~t--------Isgi~~~~~~~k------~~~~~l 347 (792)
T KOG1963|consen 289 -----P--RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKST--------ISGIKPPTPSTK------TRPQSL 347 (792)
T ss_pred -----c--ccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhh--------ccCccCCCcccc------cccccc
Confidence 0 0246789999999999999999999998876543211100 000000000000 013455
Q ss_pred ccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccC-----C------CCCCeEEEEEecCCCcEEEEEe--------C
Q 001248 821 VPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM-----P------PPPAATFLAFHPQDNNIIAIGM--------D 880 (1114)
Q Consensus 821 v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~-----~------~~~~i~~l~~sp~d~~~la~g~--------~ 880 (1114)
.+.++++|.-+.++-.+ .|.|.+||+-+.+.+..+. . +.-.+++++.+- .|.+++++- .
T Consensus 348 ~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~-~gs~maT~E~~~d~~~~~ 426 (792)
T KOG1963|consen 348 TTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSR-FGSWMATLEARIDKFNFF 426 (792)
T ss_pred ceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhc-cceEEEEeeeeehhhhcc
Confidence 67788998555555555 8999999998777665542 1 123478888888 689998864 3
Q ss_pred CC--cEEEEEcccce----EEE-eecccccCeeEEEEcCC-CC-EEEEEeCCCcEEEEeCCCCcc-----ccccccccCC
Q 001248 881 DS--SIQIYNVRVDE----VKS-KLKGHSKRITGLAFSHA-LN-VLVSSGADSQLCVWSSDGWEK-----QKNRFLQIPT 946 (1114)
Q Consensus 881 dg--~v~iwd~~~~~----~~~-~l~~h~~~V~~l~~s~d-~~-~l~s~s~D~~v~iwd~~~~~~-----~~~~~~~~~~ 946 (1114)
|| .+++|-..... +.. .-..|...+...+|.+. .. ..++++.||.++||-+...+. ..+.+..+..
T Consensus 427 ~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~s 506 (792)
T KOG1963|consen 427 DGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGS 506 (792)
T ss_pred CceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeec
Confidence 33 56788765432 222 23468887777777543 23 799999999999999843221 1233333332
Q ss_pred CCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCC-ceeeeeecCCCCcCeeEEEECCCCC--EEEEEEcCCeEEEEE
Q 001248 947 GRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL-ECVKQWVPRESSAPITHATFSCDSQ--LVYACFLDATVCVFS 1023 (1114)
Q Consensus 947 ~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~-~~~~~~~~~~h~~~v~~l~~s~dg~--~l~s~s~Dg~I~vwd 1023 (1114)
.|. ..+..++|+.||..|+++.++.|.+||..+. +...... .-..++..+.+..... ..+.....+.+.+|+
T Consensus 507 y~k---~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~WN 581 (792)
T KOG1963|consen 507 YHK---TPITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCTEG--SRNWPIAELLFTAQTQNDGALVHATQQRLSVWN 581 (792)
T ss_pred ccc---CcccchhhcCCCcEEEEecCCEEEEecCCChhhhhcccc--ccccchHhHhhhcccccccceeeccCceEehHh
Confidence 233 4789999999999999999999999999883 3322221 1123344444432111 123344578899999
Q ss_pred cCCCeeeEE
Q 001248 1024 AANLKLRCR 1032 (1114)
Q Consensus 1024 ~~~~~~~~~ 1032 (1114)
+-++.+...
T Consensus 582 ll~~~l~w~ 590 (792)
T KOG1963|consen 582 LLSMSLIWN 590 (792)
T ss_pred hhhhheecc
Confidence 998887763
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=208.37 Aligned_cols=232 Identities=16% Similarity=0.164 Sum_probs=183.7
Q ss_pred eeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCe
Q 001248 400 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ 479 (1114)
Q Consensus 400 ~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~ 479 (1114)
.+|.+..+....+..++. ++|.|++-+|+|.+|+.|+..|.+++|.+.+|..+. .+.+|-..|+|+.|+.||.
T Consensus 64 ~vw~i~k~~~~~q~~v~P---g~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs- 136 (476)
T KOG0646|consen 64 HVWEILKKDQVVQYIVLP---GPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGS- 136 (476)
T ss_pred cccccCchhhhhhhcccc---cceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCc-
Confidence 445544443333333333 489999999999999999999999999999999877 6789999999999999999
Q ss_pred eEEEEecCCCCEEEEeCC---------CCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeec
Q 001248 480 LCVITCGDDKTIKVWDAT---------NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE 550 (1114)
Q Consensus 480 ~~l~s~~~d~~i~iwd~~---------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 550 (1114)
+|+|||.||.|.+|.+. +-++++.|..|.-+|+++...+.+-..+++++|.|.++++||+..+..+.++.
T Consensus 137 -~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~ 215 (476)
T KOG0646|consen 137 -HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT 215 (476)
T ss_pred -EEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe
Confidence 89999999999999864 34677899999999999998777666799999999999999998765444332
Q ss_pred CCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCc----------------ceEEEecc
Q 001248 551 APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV----------------QLLTSIDA 614 (1114)
Q Consensus 551 ~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------------~~~~~~~~ 614 (1114)
. +..+.++.++|.+..+++|+++|.|.+.++..- ..+..+.+
T Consensus 216 f----------------------p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~G 273 (476)
T KOG0646|consen 216 F----------------------PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVG 273 (476)
T ss_pred c----------------------CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeecc
Confidence 2 224555666666667888888888888776432 23445555
Q ss_pred CCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeecccccc
Q 001248 615 DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY 662 (1114)
Q Consensus 615 ~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 662 (1114)
|.....|+|++++-||.+|++|+.||.+.+||+.+. ++++.+.....
T Consensus 274 h~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~-Q~iRtl~~~kg 320 (476)
T KOG0646|consen 274 HENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK-QCIRTLQTSKG 320 (476)
T ss_pred ccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH-HHHHHHhhhcc
Confidence 655558999999999999999999999999999887 77776654333
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.7e-22 Score=190.22 Aligned_cols=242 Identities=16% Similarity=0.243 Sum_probs=180.1
Q ss_pred EeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC-C
Q 001248 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-D 431 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-d 431 (1114)
....|.+.|+++...+..-+++++|+.||.|.|||++.........+ +-+ ..|. .....-.+|.-.|..+.|-| |
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l-i~k-~~c~--v~~~h~~~Hky~iss~~WyP~D 113 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL-IAK-HKCI--VAKQHENGHKYAISSAIWYPID 113 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc-eeh-eeee--ccccCCccceeeeeeeEEeeec
Confidence 34459999999999986444699999999999999986542110000 000 0011 11223578999999999999 7
Q ss_pred CCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCC-eeEEEEecCCCCEEEEeCCCCcceeEeecccc
Q 001248 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNK-QLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 510 (1114)
Q Consensus 432 g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 510 (1114)
...+.+++-|.+++|||..+-+... .| .-.+.|++-+|||-.. .-++++|..|-.|++.|+.+|.+-+++.||.+
T Consensus 114 tGmFtssSFDhtlKVWDtnTlQ~a~---~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~ 189 (397)
T KOG4283|consen 114 TGMFTSSSFDHTLKVWDTNTLQEAV---DF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD 189 (397)
T ss_pred CceeecccccceEEEeecccceeeE---Ee-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC
Confidence 7788999999999999999866443 23 2456788888888643 33688888999999999999999999999999
Q ss_pred CEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEE
Q 001248 511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 590 (1114)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~ 590 (1114)
.|.++.|+++.+ -.|++|+.||.|++||++..
T Consensus 190 ~vlaV~Wsp~~e-~vLatgsaDg~irlWDiRra----------------------------------------------- 221 (397)
T KOG4283|consen 190 GVLAVEWSPSSE-WVLATGSADGAIRLWDIRRA----------------------------------------------- 221 (397)
T ss_pred ceEEEEeccCce-eEEEecCCCceEEEEEeecc-----------------------------------------------
Confidence 999999998875 68999999999999999742
Q ss_pred EEeCCCeEEEEECCCcceEEEec-cCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccce
Q 001248 591 AAGDDFSIKFWDMDSVQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 654 (1114)
Q Consensus 591 ~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~ 654 (1114)
.|..++.|...++....++ ...+.+.+..++|+.||.++++.+.|..+++|+..+|....
T Consensus 222 ----sgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl 282 (397)
T KOG4283|consen 222 ----SGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTL 282 (397)
T ss_pred ----cceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccc
Confidence 1223333333332222222 22334579999999999999999999999999998885433
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.6e-22 Score=191.57 Aligned_cols=242 Identities=19% Similarity=0.206 Sum_probs=186.3
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
-.+.|..|.|+|.+.. |++++-||++++||+...+... .-.|+.++.+++|.+ ...++
T Consensus 12 P~d~IS~v~f~~~~~~-LLvssWDgslrlYdv~~~~l~~--------------------~~~~~~plL~c~F~d-~~~~~ 69 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSD-LLVSSWDGSLRLYDVPANSLKL--------------------KFKHGAPLLDCAFAD-ESTIV 69 (323)
T ss_pred ChhceeeEEEcCcCCc-EEEEeccCcEEEEeccchhhhh--------------------heecCCceeeeeccC-CceEE
Confidence 4688999999999997 5556799999999998875432 345888999999986 56788
Q ss_pred EEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEe
Q 001248 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 516 (1114)
Q Consensus 437 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~ 516 (1114)
+|+.||.|+.+|+.++.... +..|..+|.||.+++... .+++||.|++|++||.+......++. ....|.++.
T Consensus 70 ~G~~dg~vr~~Dln~~~~~~----igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~ 142 (323)
T KOG1036|consen 70 TGGLDGQVRRYDLNTGNEDQ----IGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMD 142 (323)
T ss_pred EeccCceEEEEEecCCccee----eccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEe
Confidence 99999999999999987653 778999999999998777 69999999999999998766666665 344888876
Q ss_pred eccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCC
Q 001248 517 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF 596 (1114)
Q Consensus 517 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 596 (1114)
. .|+.|+.|+.|..+.+||+++...........- .-.++++++.|++.-+++++-||
T Consensus 143 v----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~l-------------------kyqtR~v~~~pn~eGy~~sSieG 199 (323)
T KOG1036|consen 143 V----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSL-------------------KYQTRCVALVPNGEGYVVSSIEG 199 (323)
T ss_pred c----cCCEEEEeecCceEEEEEcccccchhhhccccc-------------------eeEEEEEEEecCCCceEEEeecc
Confidence 4 336899999999999999998765552221111 11334444445445688889999
Q ss_pred eEEEEECCCc----ceEEEeccCCC-------CCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 597 SIKFWDMDSV----QLLTSIDADGG-------LPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 597 ~i~iwd~~~~----~~~~~~~~~~~-------~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
.|.+=.++.. +....++.|.. .-+|++++|+|--+.|++|+.||.|.+||..+.
T Consensus 200 RVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 200 RVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR 264 (323)
T ss_pred eEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcch
Confidence 9888666554 33344444421 236889999998889999999999999998766
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.8e-22 Score=191.68 Aligned_cols=295 Identities=17% Similarity=0.221 Sum_probs=218.8
Q ss_pred eeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcce
Q 001248 423 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ 502 (1114)
Q Consensus 423 V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 502 (1114)
-.|+.||+.|.+||+|+.||.|.|||+.|...-+ .+.+|..+|++++||+||+ .|+|+|.|..|++||+..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 7899999999999999999999999999866433 6889999999999999999 7999999999999999999999
Q ss_pred eEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEe
Q 001248 503 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 582 (1114)
Q Consensus 503 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~ 582 (1114)
+.+. ..++|+.+.|++...+..+++- .+..-.+-++.... -..+..++++.... .-.+..|
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~-~~~sp~vi~~s~~~-----------h~~Lp~d~d~dln~------sas~~~f 161 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATI-MEESPVVIDFSDPK-----------HSVLPKDDDGDLNS------SASHGVF 161 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEE-ecCCcEEEEecCCc-----------eeeccCCCcccccc------ccccccc
Confidence 9887 7899999999998775555443 33323333333211 11222233332111 1112358
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeecccccc
Q 001248 583 DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY 662 (1114)
Q Consensus 583 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 662 (1114)
++.|+++++|...|.+.++|..+.+++..++... ...|..+.++..|..|+.-+.|..||.|++..-... +
T Consensus 162 dr~g~yIitGtsKGkllv~~a~t~e~vas~rits-~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~-----~--- 232 (405)
T KOG1273|consen 162 DRRGKYIITGTSKGKLLVYDAETLECVASFRITS-VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDE-----G--- 232 (405)
T ss_pred cCCCCEEEEecCcceEEEEecchheeeeeeeech-heeeeEEEEeccCcEEEEecCCceEEEEehhhhccc-----C---
Confidence 8889999999999999999999999988886543 246888999999999999999999999986532000 0
Q ss_pred ccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccc
Q 001248 663 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS 742 (1114)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~ 742 (1114)
.++.+ ...
T Consensus 233 -----------------------------------------------------------r~~e~-----------e~~-- 240 (405)
T KOG1273|consen 233 -----------------------------------------------------------RDGEV-----------EPE-- 240 (405)
T ss_pred -----------------------------------------------------------ccCCc-----------Chh--
Confidence 00000 000
Q ss_pred cccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCcc
Q 001248 743 LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP 822 (1114)
Q Consensus 743 ~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~ 822 (1114)
| ++-|+ -..-.-.
T Consensus 241 -------~-----------------------------------------------K~qDv-------------VNk~~Wk 253 (405)
T KOG1273|consen 241 -------H-----------------------------------------------KLQDV-------------VNKLQWK 253 (405)
T ss_pred -------H-----------------------------------------------HHHHH-------------Hhhhhhh
Confidence 0 00000 0233456
Q ss_pred EEEEeeCCCEEEEEe--CCeEEEEEcCCCccccccCCCC-CCeEEEEEecCCCcEEEEEeCCCcEEEEEccc
Q 001248 823 CFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 891 (1114)
Q Consensus 823 ~v~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~ 891 (1114)
+++||.+|.|++.++ ...++||....|.+++.+.|.. .....+.|+| -...+++- ..|.|+||....
T Consensus 254 ~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp-~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 254 KCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHP-VRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred heeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeeccccc-ceeeeeec-cCCceEEEEeec
Confidence 789999999999888 4679999999999999998887 5678899999 66677766 789999998653
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.5e-22 Score=201.14 Aligned_cols=249 Identities=13% Similarity=0.194 Sum_probs=194.5
Q ss_pred cccceEEEEEccCcc-eeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEee
Q 001248 750 RATKISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 828 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~ 828 (1114)
...+|.+..|.|+|. .+++++.-..++.||+...+...-.. +.+ -....+....+|+
T Consensus 256 ~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~---------------------~~g-~e~~~~e~FeVSh 313 (514)
T KOG2055|consen 256 EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKP---------------------PYG-VEEKSMERFEVSH 313 (514)
T ss_pred ccCccceeeecCCCceEEEecccceEEEEeeccccccccccC---------------------CCC-cccchhheeEecC
Confidence 346789999999999 88888888999999886433221110 111 0234577889999
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeeccccc-Cee
Q 001248 829 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK-RIT 906 (1114)
Q Consensus 829 d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~-~V~ 906 (1114)
++++|+..+ .|.|.+....+++.+.+++ ..+.|..++|+. +++.|.+.+.+|.|++||+....++..+....+ .=+
T Consensus 314 d~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gt 391 (514)
T KOG2055|consen 314 DSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGT 391 (514)
T ss_pred CCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCcccee
Confidence 999999998 8999999999999998887 567899999998 888888888899999999999998888864322 236
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCcccc-ccccccCCCCCCCCCCceEEEEccCCcEEEEE---eCCeEEEEEcCC
Q 001248 907 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQK-NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTK 982 (1114)
Q Consensus 907 ~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~---~d~~i~iwd~~~ 982 (1114)
++|.|+++.+||+|+..|.|.|||.++.-... ..++..... ....|+.+.|++|+..||.+ ....+++-.+.+
T Consensus 392 s~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dN---Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS 468 (514)
T KOG2055|consen 392 SLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDN---LTTAITSLQFNHDAQILAIASRVKKNALRLVHVPS 468 (514)
T ss_pred eeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhh---hheeeeeeeeCcchhhhhhhhhccccceEEEeccc
Confidence 78888999999999999999999976522111 111211111 12478999999999999984 566899999998
Q ss_pred CceeeeeecCC-CCcCeeEEEECCCCCEEEEEEcCCeEEEEEcC
Q 001248 983 LECVKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAA 1025 (1114)
Q Consensus 983 ~~~~~~~~~~~-h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~ 1025 (1114)
......|.... .-+.|+||+|||.|.+||.|..+|.|.+|.+.
T Consensus 469 ~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 469 CTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 88888887542 24679999999999999999999999999864
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-20 Score=208.44 Aligned_cols=205 Identities=17% Similarity=0.201 Sum_probs=147.9
Q ss_pred EEEEeeCCCEEEEE-e-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCC-cEEEEEcccceEEEeec
Q 001248 823 CFALSKNDSYVMSA-S-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS-SIQIYNVRVDEVKSKLK 899 (1114)
Q Consensus 823 ~v~~s~d~~~l~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg-~v~iwd~~~~~~~~~l~ 899 (1114)
.++++|+++.++++ . ++.|++||+.+.+.+..+.. ...+.+++|+| ++.+++++..++ .+.+||..+++....+.
T Consensus 77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~ 154 (300)
T TIGR03866 77 LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVL 154 (300)
T ss_pred EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEE
Confidence 45666777665544 3 67888888887766665542 23468899999 899998888765 57788998887765543
Q ss_pred ccccCeeEEEEcCCCCEEEE-EeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE--EeCCeEE
Q 001248 900 GHSKRITGLAFSHALNVLVS-SGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHETQLA 976 (1114)
Q Consensus 900 ~h~~~V~~l~~s~d~~~l~s-~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~--~~d~~i~ 976 (1114)
. ...+.+++|+|++++|+. +..++.|++||+++++............+ ........++|+|+|+++++ +.++.+.
T Consensus 155 ~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~s~dg~~~~~~~~~~~~i~ 232 (300)
T TIGR03866 155 V-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVH-PEAVQPVGIKLTKDGKTAFVALGPANRVA 232 (300)
T ss_pred c-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccc-cccCCccceEECCCCCEEEEEcCCCCeEE
Confidence 2 234678999999998854 45699999999998654321111111000 00113357899999998655 4567899
Q ss_pred EEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCCeeeEEeC
Q 001248 977 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 977 iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s-~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
+||..+++.+..+. +...+.+++|+|+|++|++++ .+|.|+|||+.+++.+.++.
T Consensus 233 v~d~~~~~~~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 233 VVDAKTYEVLDYLL---VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred EEECCCCcEEEEEE---eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 99999888776553 245789999999999998864 58999999999999998887
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-22 Score=205.44 Aligned_cols=296 Identities=16% Similarity=0.251 Sum_probs=216.4
Q ss_pred EEecCCC-CEEEEeCCCCcceeEeecc-ccCEEEEeeccCCCceEEEEEec-CCeEEEEEcCCCCCeeeecCCCCeeEEE
Q 001248 483 ITCGDDK-TIKVWDATNGAKQYIFEGH-EAPVYSVCPHHKENIQFIFSTAL-DGKIKAWLYDNLGSRVDYEAPGRWCTTM 559 (1114)
Q Consensus 483 ~s~~~d~-~i~iwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~~~v~~~ 559 (1114)
.+++.|. ++.+||+++|....++++- ...-.++.. -++.+++++.. ...|.+|.+.............+.+.+
T Consensus 11 sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~---l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~a- 86 (476)
T KOG0646|consen 11 SSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTA---LNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHA- 86 (476)
T ss_pred eccCCCCcceeEEecCCCceeEEecCcccccchhhhh---hchhheeeecccCccccccccCchhhhhhhcccccceee-
Confidence 3444454 4999999999999888765 222222221 12246666654 457889988765444433333334444
Q ss_pred EEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCC
Q 001248 560 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 639 (1114)
Q Consensus 560 ~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d 639 (1114)
+.-+|.|.+|+.|+..|.|++|.+.+|..+..+..|- ..|+|+.|+.||.++++|+.|
T Consensus 87 --------------------l~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHY--Q~ITcL~fs~dgs~iiTgskD 144 (476)
T KOG0646|consen 87 --------------------LASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHY--QSITCLKFSDDGSHIITGSKD 144 (476)
T ss_pred --------------------eecCCCceEEEeecccCcEEEEEeccccHHHHHHhhc--cceeEEEEeCCCcEEEecCCC
Confidence 4445555578888899999999999999999997664 489999999999999999999
Q ss_pred CcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCccccc
Q 001248 640 NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRIT 719 (1114)
Q Consensus 640 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 719 (1114)
|.|.+|.+.+-.. ....|.
T Consensus 145 g~V~vW~l~~lv~---a~~~~~---------------------------------------------------------- 163 (476)
T KOG0646|consen 145 GAVLVWLLTDLVS---ADNDHS---------------------------------------------------------- 163 (476)
T ss_pred ccEEEEEEEeecc---cccCCC----------------------------------------------------------
Confidence 9999998754311 000000
Q ss_pred ccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccC--cceeeecccCceEEEEeecccccCCCCCccccccc
Q 001248 720 EESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNS--GNAILALASNAIHLLWKWQRTERNSSGKATASVAP 797 (1114)
Q Consensus 720 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 797 (1114)
-..++.| ..|.-.|+++...+. ..++++++.|.++++||+..
T Consensus 164 ---~~p~~~f------------------~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~--------------- 207 (476)
T KOG0646|consen 164 ---VKPLHIF------------------SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL--------------- 207 (476)
T ss_pred ---ccceeee------------------ccCcceeEEEEecCCCccceEEEecCCceEEEEEecc---------------
Confidence 0011122 237788888887664 45799999999999998863
Q ss_pred cccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCc----------------cccccCCCCC
Q 001248 798 QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK----------------TMATFMPPPP 860 (1114)
Q Consensus 798 ~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~----------------~~~~~~~~~~ 860 (1114)
|.++.... .+..+.+++++|-++.+.+|. +|.|.+.++.... .+..+.+|.+
T Consensus 208 -------g~LLlti~----fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~ 276 (476)
T KOG0646|consen 208 -------GVLLLTIT----FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHEN 276 (476)
T ss_pred -------ceeeEEEe----cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccC
Confidence 33332211 577899999999999999998 8999988875322 2344677877
Q ss_pred --CeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCC
Q 001248 861 --AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA 913 (1114)
Q Consensus 861 --~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d 913 (1114)
.|+|++++- ||.+|++|+.||.|+|||+.+.++++++....++|+.+.+.|=
T Consensus 277 ~~~ITcLais~-DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 277 ESAITCLAIST-DGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred CcceeEEEEec-CccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence 999999999 9999999999999999999999999998877889999999654
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-21 Score=188.87 Aligned_cols=307 Identities=14% Similarity=0.188 Sum_probs=220.5
Q ss_pred ccccceEEEEEcc-CcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEe
Q 001248 749 LRATKISRLIFTN-SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 827 (1114)
Q Consensus 749 ~~~~~i~~l~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s 827 (1114)
.|.+.|.++.+.+ .|+++++++.||.|.|||+++.........++.. .++...-...+|...|..+.|-
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~----------~c~v~~~h~~~Hky~iss~~Wy 110 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKH----------KCIVAKQHENGHKYAISSAIWY 110 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceehe----------eeeccccCCccceeeeeeeEEe
Confidence 3788999999987 5889999999999999999875433222222111 0100011123488899999998
Q ss_pred eCC-CEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCC--CcEEEEEeCCCcEEEEEcccceEEEeeccccc
Q 001248 828 KND-SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQD--NNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 903 (1114)
Q Consensus 828 ~d~-~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d--~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~ 903 (1114)
|-. -++.+++ |.+++|||..+.+....|+ -++.|.+-++||-. -.++|+|..|-+|++.|+.+|..-..+.||.+
T Consensus 111 P~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~ 189 (397)
T KOG4283|consen 111 PIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD 189 (397)
T ss_pred eecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC
Confidence 844 4566666 9999999999988877776 45668887888732 35889999999999999999999999999999
Q ss_pred CeeEEEEcCCCCE-EEEEeCCCcEEEEeCCCCcccccccc--------ccCCCCCCCCCCceEEEEccCCcEEEE-EeCC
Q 001248 904 RITGLAFSHALNV-LVSSGADSQLCVWSSDGWEKQKNRFL--------QIPTGRTPTAQSDTRVQFHQDQIHFLV-VHET 973 (1114)
Q Consensus 904 ~V~~l~~s~d~~~-l~s~s~D~~v~iwd~~~~~~~~~~~~--------~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~ 973 (1114)
.|.+|.|+|...+ |++|+.||.|++||+..-.. ...++ ...+......+.+..++|+.||.++++ +.|.
T Consensus 190 ~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasg-cf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~ 268 (397)
T KOG4283|consen 190 GVLAVEWSPSSEWVLATGSADGAIRLWDIRRASG-CFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD 268 (397)
T ss_pred ceEEEEeccCceeEEEecCCCceEEEEEeecccc-eeEEeecccCccCccccccccccceeeeeeecccchhhhhccCcc
Confidence 9999999998766 78999999999999986311 01111 111112223367899999999999999 7999
Q ss_pred eEEEEEcCCCcee-eeeecCCCCcC---eeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCcc
Q 001248 974 QLAIFETTKLECV-KQWVPRESSAP---ITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVH 1049 (1114)
Q Consensus 974 ~i~iwd~~~~~~~-~~~~~~~h~~~---v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 1049 (1114)
.+++|+..+|+-. +.+....|... -..+. +.+...++---.|+.+.++++-.|+.+..+. +| ...+.
T Consensus 269 r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~-------~h-~k~i~ 339 (397)
T KOG4283|consen 269 RIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLS-------TH-LKRIN 339 (397)
T ss_pred ceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeee-------cc-cceee
Confidence 9999999888642 22221122211 11122 3444444444456899999999999998887 32 22233
Q ss_pred ceEEEecCCCCCeEEEEeCCCcEEEEeccC
Q 001248 1050 PLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1050 ~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~ 1079 (1114)
+..|-| +-+.+.+|+.|+++..|-+.-
T Consensus 340 --c~~~~~-~fq~~~tg~~d~ni~~w~p~l 366 (397)
T KOG4283|consen 340 --CAAYRP-DFEQCFTGDMNGNIYMWSPAL 366 (397)
T ss_pred --EEeecC-chhhhhccccCCccccccccc
Confidence 677777 577899999999999998733
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-22 Score=213.01 Aligned_cols=435 Identities=15% Similarity=0.146 Sum_probs=274.6
Q ss_pred EEEcC---CCCeEEEEeCCCeEEEEEccCCcee---eeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCC
Q 001248 426 VIWSP---DGSLFGVAYSRHIVQIYSYHGGDEV---RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG 499 (1114)
Q Consensus 426 l~~sp---dg~~las~~~dg~i~iwd~~~~~~~---~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 499 (1114)
..|++ ....||.+..||.|.++|......- +++.....|...|..+.|.| |+. .|++++.|.++++||+.++
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~-~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GES-LLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-Cce-eEEEccCCceeeeeeeccc
Confidence 55665 4557899999999999998753211 22345678999999999999 554 7999999999999999999
Q ss_pred cceeE--eeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccce
Q 001248 500 AKQYI--FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 577 (1114)
Q Consensus 500 ~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v 577 (1114)
+++.. +.||.+.|.++||.+... ..+++|+.||.|.+||++-..... +. .....++..|....
T Consensus 133 ~l~G~~~~~GH~~SvkS~cf~~~n~-~vF~tGgRDg~illWD~R~n~~d~-~e------------~~~~~~~~~~n~~p- 197 (720)
T KOG0321|consen 133 RLVGGRLNLGHTGSVKSECFMPTNP-AVFCTGGRDGEILLWDCRCNGVDA-LE------------EFDNRIYGRHNTAP- 197 (720)
T ss_pred eeecceeecccccccchhhhccCCC-cceeeccCCCcEEEEEEeccchhh-HH------------HHhhhhhccccCCC-
Confidence 98876 899999999999987654 689999999999999997533110 00 00000000000000
Q ss_pred eEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCe---EEEcCCCCEEEEEeC-CCcEEEEEccCCccc
Q 001248 578 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPR---IRFNKDGCLLAVSTN-DNGIKILATSDGIRL 653 (1114)
Q Consensus 578 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~---~~~s~d~~~l~~~~~-dg~i~iwd~~~~~~~ 653 (1114)
.|.. . ....++-|-. + ...|.+ +.+..|...||+++. |+.|++||++.....
T Consensus 198 -----tpsk--p----~~kr~~k~kA-----------~--s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~ 253 (720)
T KOG0321|consen 198 -----TPSK--P----LKKRIRKWKA-----------A--SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTA 253 (720)
T ss_pred -----CCCc--h----hhcccccccc-----------c--cCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccc
Confidence 0000 0 0011111111 1 112333 556678888998887 999999999876322
Q ss_pred eeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEecc
Q 001248 654 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 733 (1114)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~ 733 (1114)
.+.-.....
T Consensus 254 ~r~ep~~~~----------------------------------------------------------------------- 262 (720)
T KOG0321|consen 254 YRQEPRGSD----------------------------------------------------------------------- 262 (720)
T ss_pred cccCCCccc-----------------------------------------------------------------------
Confidence 211100000
Q ss_pred CCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCC
Q 001248 734 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 813 (1114)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~ 813 (1114)
.+... ......+.++.....|.+|++.+.|+.|+.|++......+.+.. .|.+.
T Consensus 263 --------~~~t~-skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~------------sg~~~----- 316 (720)
T KOG0321|consen 263 --------KYPTH-SKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEF------------SGKLN----- 316 (720)
T ss_pred --------CccCc-ccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhc------------cCccc-----
Confidence 00000 00234677888888999999999999999999876555443321 11111
Q ss_pred CCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCcc-ccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc
Q 001248 814 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT-MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 891 (1114)
Q Consensus 814 ~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~ 891 (1114)
...-..-..+||+.++++|+ |....+|.+.+.+. ...+.+|...|++++|.|..-.-+|++++|..++||++..
T Consensus 317 ----~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 317 ----SSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred ----ceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccC
Confidence 11111235689999999999 99999999987654 4557899999999999986556677889999999999965
Q ss_pred ce--------------EEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceE
Q 001248 892 DE--------------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTR 957 (1114)
Q Consensus 892 ~~--------------~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 957 (1114)
+- ....+++|.-.+..+.++-.+.+.... .+..++|... ..
T Consensus 393 ~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss~~~t~~~pR--~~~~r~~ssP-----------------------~s 447 (720)
T KOG0321|consen 393 GLEEIYAADKDSIVYEYSRRFKGHLPQVLNVNSSLRKTYKDPR--EGMNRISSSP-----------------------VS 447 (720)
T ss_pred chhhccccccchhhhhhhhhhhccccccccccccccccccchh--hhccccccCc-----------------------cc
Confidence 42 223345565555555554333322221 3334444322 33
Q ss_pred EEEccCCcEEEEE-----eCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEc-----------CCeEEE
Q 001248 958 VQFHQDQIHFLVV-----HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL-----------DATVCV 1021 (1114)
Q Consensus 958 v~fspdg~~l~~~-----~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~-----------Dg~I~v 1021 (1114)
++..|++.-...+ ..-.|...+.+..+....-...+|-..|+...+++.+..+++.+- ++.+.+
T Consensus 448 ~a~~~s~~s~~~~~~~t~qt~~i~~~p~kr~~~~ss~~s~~~~~Svs~~d~ss~~s~~~s~SP~~~~~stpp~sets~~s 527 (720)
T KOG0321|consen 448 LACSPSGASDDCGYGVTDQTSGIVVFPTKRNKPSSSRGSGGHLSSVSAEDWSSEKSQLASRSPQKNRGSTPPISETSVNS 527 (720)
T ss_pred hhcCcCCcccccCCCcccccccceecchhccCccccccccccccccccCCCccccccccccCcccccCCCCCcCcccccc
Confidence 4444444444331 112355555554444444333456667777777777777888887 788888
Q ss_pred EEcCCC
Q 001248 1022 FSAANL 1027 (1114)
Q Consensus 1022 wd~~~~ 1027 (1114)
|....-
T Consensus 528 ~~s~l~ 533 (720)
T KOG0321|consen 528 PNSSLH 533 (720)
T ss_pred cccccC
Confidence 876543
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.7e-21 Score=186.82 Aligned_cols=283 Identities=15% Similarity=0.187 Sum_probs=209.1
Q ss_pred cCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeC
Q 001248 417 KDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA 496 (1114)
Q Consensus 417 ~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~ 496 (1114)
....+.|+.|.|+|.+..|++++.||++++||+....... .-.|..++.+++|.++.+ +++|+.||.|+.+|+
T Consensus 10 npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~----~~~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dl 82 (323)
T KOG1036|consen 10 NPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL----KFKHGAPLLDCAFADEST---IVTGGLDGQVRRYDL 82 (323)
T ss_pred CCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh----heecCCceeeeeccCCce---EEEeccCceEEEEEe
Confidence 3456799999999999999999999999999999874332 235889999999998765 899999999999999
Q ss_pred CCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccc
Q 001248 497 TNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 576 (1114)
Q Consensus 497 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~ 576 (1114)
.++... .+..|..+|.++...+.. ..+++||.|++|++||.+.......+.... .|.++
T Consensus 83 n~~~~~-~igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~----------------- 141 (323)
T KOG1036|consen 83 NTGNED-QIGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCM----------------- 141 (323)
T ss_pred cCCcce-eeccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCc-eEEEE-----------------
Confidence 988754 455699999999976544 579999999999999998633333322222 33333
Q ss_pred eeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccce-e
Q 001248 577 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL-R 655 (1114)
Q Consensus 577 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~-~ 655 (1114)
+-.++.|+.|+.+..+.+||+++...........-.-.++|+++-|++.-.++++-||.|.+=.+....... +
T Consensus 142 ------~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~sk 215 (323)
T KOG1036|consen 142 ------DVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSK 215 (323)
T ss_pred ------eccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhh
Confidence 334457999999999999999876544322222222357899999988888999999998775443320000 0
Q ss_pred eccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCC
Q 001248 656 TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS 735 (1114)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~ 735 (1114)
.+ +|.+
T Consensus 216 ky----------------aFkC---------------------------------------------------------- 221 (323)
T KOG1036|consen 216 KY----------------AFKC---------------------------------------------------------- 221 (323)
T ss_pred ce----------------eEEe----------------------------------------------------------
Confidence 00 0000
Q ss_pred CCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCC
Q 001248 736 EPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDS 815 (1114)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~ 815 (1114)
| .-+.++ .-
T Consensus 222 --------------H-------r~~~~~----------~~---------------------------------------- 230 (323)
T KOG1036|consen 222 --------------H-------RLSEKD----------TE---------------------------------------- 230 (323)
T ss_pred --------------e-------ecccCC----------ce----------------------------------------
Confidence 0 000001 10
Q ss_pred CCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeC
Q 001248 816 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD 880 (1114)
Q Consensus 816 ~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~ 880 (1114)
.-.+|.+++|+|--..||+|+ ||.|.+||+.+.+.+..+..-+..|..++|+. +|..||+|+.
T Consensus 231 -~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~-dG~~LAia~s 294 (323)
T KOG1036|consen 231 -IIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSM-DGSLLAIASS 294 (323)
T ss_pred -EEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEecc-CCCeEEEEec
Confidence 123578899999988999998 99999999999999999887778899999999 9999999874
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.1e-22 Score=204.57 Aligned_cols=233 Identities=20% Similarity=0.319 Sum_probs=182.9
Q ss_pred ceeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEc
Q 001248 350 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 429 (1114)
Q Consensus 350 ~~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 429 (1114)
.-+++.+|.++-..++|++...-.|++|+.|++|.+||+....... ........+.+|++.|..++|+
T Consensus 169 Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~------------~~~~p~~~~~~h~~~VeDV~~h 236 (422)
T KOG0264|consen 169 PDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKED------------KVVDPKTIFSGHEDVVEDVAWH 236 (422)
T ss_pred CceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCC------------ccccceEEeecCCcceehhhcc
Confidence 3457778999899999999888779999999999999998654420 0112233689999999999999
Q ss_pred C-CCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCC-cceeEeec
Q 001248 430 P-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEG 507 (1114)
Q Consensus 430 p-dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~ 507 (1114)
+ +..++++++.|+.+.|||++++ .........+|.+.|+|++|+|-+.. +|||||.|++|++||+++- +++.++.+
T Consensus 237 ~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah~~~vn~~~fnp~~~~-ilAT~S~D~tV~LwDlRnL~~~lh~~e~ 314 (422)
T KOG0264|consen 237 PLHEDLFGSVGDDGKLMIWDTRSN-TSKPSHSVKAHSAEVNCVAFNPFNEF-ILATGSADKTVALWDLRNLNKPLHTFEG 314 (422)
T ss_pred ccchhhheeecCCCeEEEEEcCCC-CCCCcccccccCCceeEEEeCCCCCc-eEEeccCCCcEEEeechhcccCceeccC
Confidence 9 7788999999999999999964 33344467899999999999999887 7999999999999999864 56789999
Q ss_pred cccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCC
Q 001248 508 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 587 (1114)
Q Consensus 508 h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~ 587 (1114)
|...|..+.|+|..+ ..|++++.|+.+.+||+..-.....-.........+ .+..|.+...|.-+.|+|...
T Consensus 315 H~dev~~V~WSPh~e-tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEl-------lF~HgGH~~kV~DfsWnp~eP 386 (422)
T KOG0264|consen 315 HEDEVFQVEWSPHNE-TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPEL-------LFIHGGHTAKVSDFSWNPNEP 386 (422)
T ss_pred CCcceEEEEeCCCCC-ceeEecccCCcEEEEeccccccccChhhhccCCcce-------eEEecCcccccccccCCCCCC
Confidence 999999999999876 699999999999999998655443211111111111 233444445677778888876
Q ss_pred EE-EEEeCCCeEEEEECC
Q 001248 588 RF-LAAGDDFSIKFWDMD 604 (1114)
Q Consensus 588 ~l-~~~~~dg~i~iwd~~ 604 (1114)
++ +++++|+.+.||.+.
T Consensus 387 W~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 387 WTIASVAEDNILQIWQMA 404 (422)
T ss_pred eEEEEecCCceEEEeecc
Confidence 65 557899999999975
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-18 Score=191.00 Aligned_cols=254 Identities=16% Similarity=0.232 Sum_probs=204.7
Q ss_pred ccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCe
Q 001248 355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 434 (1114)
Q Consensus 355 ~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 434 (1114)
..|+..-+.++|.|+|.. |.+++.||.|++|+....+..- . .+.-++..|.+++. ++.+
T Consensus 10 yaht~G~t~i~~d~~gef-i~tcgsdg~ir~~~~~sd~e~P-----------------~-ti~~~g~~v~~ia~--~s~~ 68 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEF-ICTCGSDGDIRKWKTNSDEEEP-----------------E-TIDISGELVSSIAC--YSNH 68 (933)
T ss_pred hhccCceEEEEEcCCCCE-EEEecCCCceEEeecCCcccCC-----------------c-hhhccCceeEEEee--cccc
Confidence 358888999999999995 8888899999999987652111 0 12226667877776 4569
Q ss_pred EEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEE
Q 001248 435 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 514 (1114)
Q Consensus 435 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 514 (1114)
|++|+.+++|.+|.+..++.-. .+....-++.+++|+.+|+ +++.||.|-.|++-++.+......+.+|.++|.+
T Consensus 69 f~~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~ 143 (933)
T KOG1274|consen 69 FLTGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQ 143 (933)
T ss_pred eEEeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCceee
Confidence 9999999999999999876443 2334456899999999999 7999999999999999999999999999999999
Q ss_pred EeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeC
Q 001248 515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 594 (1114)
Q Consensus 515 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 594 (1114)
+.+++ ++++|++.+.||.|++||+.++.....+..-...-.. .....+..++|+|++..++..+.
T Consensus 144 l~~~p--~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~-------------~~s~i~~~~aW~Pk~g~la~~~~ 208 (933)
T KOG1274|consen 144 LSYDP--KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEF-------------ILSRICTRLAWHPKGGTLAVPPV 208 (933)
T ss_pred eeEcC--CCCEEEEEecCceEEEEEcccchhhhhcccCCccccc-------------cccceeeeeeecCCCCeEEeecc
Confidence 99754 5589999999999999999987665544332110000 00124455778888888999999
Q ss_pred CCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccC
Q 001248 595 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 649 (1114)
Q Consensus 595 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~ 649 (1114)
|+.|.+|+..+......+........+.++.|+|.|+|||+++.+|.|.|||+.+
T Consensus 209 d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 209 DNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred CCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 9999999999999998887666555689999999999999999999999999985
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.5e-20 Score=202.72 Aligned_cols=294 Identities=13% Similarity=0.138 Sum_probs=203.1
Q ss_pred CCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccC
Q 001248 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 511 (1114)
Q Consensus 432 g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 511 (1114)
++.+++++.|+.|++||+.+++.+. .+..|. .+.+++|+|+++. ++++++.++.|++||..+++.+..+..+..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~---~~~~~~-~~~~l~~~~dg~~-l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~- 74 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTR---TFPVGQ-RPRGITLSKDGKL-LYVCASDSDTIQVIDLATGEVIGTLPSGPD- 74 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEE---EEECCC-CCCceEECCCCCE-EEEEECCCCeEEEEECCCCcEEEeccCCCC-
Confidence 3578899999999999999887665 455443 4678999999984 346778899999999999988877765544
Q ss_pred EEEEeeccCCCceEEE-EEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEE
Q 001248 512 VYSVCPHHKENIQFIF-STALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 590 (1114)
Q Consensus 512 v~~~~~~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~ 590 (1114)
+..++|++ +++.++ +++.++.+++||+.+......+.. ...+. .++++|++.+++
T Consensus 75 ~~~~~~~~--~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~---------------------~~~~~~dg~~l~ 130 (300)
T TIGR03866 75 PELFALHP--NGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPE---------------------GMAVSPDGKIVV 130 (300)
T ss_pred ccEEEECC--CCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcc---------------------eEEECCCCCEEE
Confidence 45667654 445554 456689999999987544333321 11123 355556666777
Q ss_pred EEeCCC-eEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEE-eCCCcEEEEEccCCccceeeccccccccccCC
Q 001248 591 AAGDDF-SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS-TNDNGIKILATSDGIRLLRTFENLAYDASRTS 668 (1114)
Q Consensus 591 ~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 668 (1114)
+++.++ .+.+||..+++.+..+.... ...+++|+++|++|+++ ..++.|++||+.++ +....+..+
T Consensus 131 ~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~-~~~~~~~~~-------- 198 (300)
T TIGR03866 131 NTSETTNMAHFIDTKTYEIVDNVLVDQ---RPRFAEFTADGKELWVSSEIGGTVSVIDVATR-KVIKKITFE-------- 198 (300)
T ss_pred EEecCCCeEEEEeCCCCeEEEEEEcCC---CccEEEECCCCCEEEEEcCCCCEEEEEEcCcc-eeeeeeeec--------
Confidence 777654 57788998887766554322 35789999999988655 45899999998776 222211100
Q ss_pred CCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCcc
Q 001248 669 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN 748 (1114)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~ 748 (1114)
T Consensus 199 -------------------------------------------------------------------------------- 198 (300)
T TIGR03866 199 -------------------------------------------------------------------------------- 198 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEee
Q 001248 749 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 828 (1114)
Q Consensus 749 ~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~ 828 (1114)
..+. .. .......++++|
T Consensus 199 ------------~~~~------~~--------------------------------------------~~~~~~~i~~s~ 216 (300)
T TIGR03866 199 ------------IPGV------HP--------------------------------------------EAVQPVGIKLTK 216 (300)
T ss_pred ------------cccc------cc--------------------------------------------ccCCccceEECC
Confidence 0000 00 001123467788
Q ss_pred CCCEEEEE--eCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEE-eCCCcEEEEEcccceEEEeecccccCe
Q 001248 829 NDSYVMSA--SGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIG-MDDSSIQIYNVRVDEVKSKLKGHSKRI 905 (1114)
Q Consensus 829 d~~~l~~~--~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g-~~dg~v~iwd~~~~~~~~~l~~h~~~V 905 (1114)
++++++++ .++.+.+||..+++....+. +...+.+++|+| ++++|+++ ..+|.|++||+.+++++..+... ...
T Consensus 217 dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~ 293 (300)
T TIGR03866 217 DGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTP-DEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLP 293 (300)
T ss_pred CCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECC-CCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-ccc
Confidence 88875543 26789999998877665543 345789999999 88888776 56899999999999999888755 556
Q ss_pred eEEEEcC
Q 001248 906 TGLAFSH 912 (1114)
Q Consensus 906 ~~l~~s~ 912 (1114)
++++|+|
T Consensus 294 ~~~~~~~ 300 (300)
T TIGR03866 294 WGVVVRP 300 (300)
T ss_pred ceeEeCC
Confidence 8898875
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-21 Score=202.86 Aligned_cols=314 Identities=16% Similarity=0.209 Sum_probs=228.5
Q ss_pred eEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEE
Q 001248 458 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 537 (1114)
Q Consensus 458 ~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~ 537 (1114)
...+.||.+.|.+|...|.|. .|++|+.||+|+||.+.+|.|++++. ..+.|.+++|++.++..+|+.+-.+. +.+
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~--wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~-~~i 468 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGE--WLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGEC-VLI 468 (733)
T ss_pred eeeEeccCCeEEEEEecCCcc--eeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCc-eEE
Confidence 345789999999999999999 79999999999999999999999887 56799999999998866666655444 444
Q ss_pred EEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEE----eCCCeEEEEECCCcce----E
Q 001248 538 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA----GDDFSIKFWDMDSVQL----L 609 (1114)
Q Consensus 538 wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~----~~dg~i~iwd~~~~~~----~ 609 (1114)
-+..-+..+.... ....|.++ ..++.+..|.-..... +
T Consensus 469 vnp~~G~~~e~~~----------------------------------t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v 514 (733)
T KOG0650|consen 469 VNPIFGDRLEVGP----------------------------------TKELLASAPNESEPDAAVVTWSRASLDELEKGV 514 (733)
T ss_pred eCccccchhhhcc----------------------------------hhhhhhcCCCccCCcccceeechhhhhhhccce
Confidence 4332221111000 00012222 2356777887542211 1
Q ss_pred EEeccCCCCCCcCeEEEcCCCCEEEEEeCC---CcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhc
Q 001248 610 TSIDADGGLPASPRIRFNKDGCLLAVSTND---NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAA 686 (1114)
Q Consensus 610 ~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1114)
...-.+ ...|..+.|+..|.||++...+ ..|.|.++.... ... .|
T Consensus 515 ~~~I~~--~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~-sQ~------------------PF----------- 562 (733)
T KOG0650|consen 515 CIVIKH--PKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRK-SQS------------------PF----------- 562 (733)
T ss_pred EEEEec--CCccceeeeecCCceEEEeccCCCcceEEEEeccccc-ccC------------------ch-----------
Confidence 122222 4579999999999999987654 335555543321 000 00
Q ss_pred cccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCccee
Q 001248 687 TSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAI 766 (1114)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l 766 (1114)
....+.|.++.|.|...++
T Consensus 563 -------------------------------------------------------------~kskG~vq~v~FHPs~p~l 581 (733)
T KOG0650|consen 563 -------------------------------------------------------------RKSKGLVQRVKFHPSKPYL 581 (733)
T ss_pred -------------------------------------------------------------hhcCCceeEEEecCCCceE
Confidence 1144678999999999988
Q ss_pred eecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEE
Q 001248 767 LALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFN 845 (1114)
Q Consensus 767 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd 845 (1114)
++++.. .|+|||+. .+.++...++ ....|..++++|.|..|+.|+ |+.+..||
T Consensus 582 fVaTq~-~vRiYdL~----------------------kqelvKkL~t---g~kwiS~msihp~GDnli~gs~d~k~~WfD 635 (733)
T KOG0650|consen 582 FVATQR-SVRIYDLS----------------------KQELVKKLLT---GSKWISSMSIHPNGDNLILGSYDKKMCWFD 635 (733)
T ss_pred EEEecc-ceEEEehh----------------------HHHHHHHHhc---CCeeeeeeeecCCCCeEEEecCCCeeEEEE
Confidence 887765 67777765 3333333333 466789999999999999999 99999999
Q ss_pred cC-CCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcc------cc---eEEEeecccccC----eeEEEEc
Q 001248 846 MM-TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR------VD---EVKSKLKGHSKR----ITGLAFS 911 (1114)
Q Consensus 846 ~~-~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~------~~---~~~~~l~~h~~~----V~~l~~s 911 (1114)
+. +.+..+++..|...+++++|++ .-.++|+|+.||++.|+.-. .. -.+..+++|... |..+.|+
T Consensus 636 ldlsskPyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wH 714 (733)
T KOG0650|consen 636 LDLSSKPYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWH 714 (733)
T ss_pred cccCcchhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeeccc
Confidence 97 4467788999999999999999 88899999999999998532 11 245778899876 8899999
Q ss_pred CCCCEEEEEeCCCcEEEE
Q 001248 912 HALNVLVSSGADSQLCVW 929 (1114)
Q Consensus 912 ~d~~~l~s~s~D~~v~iw 929 (1114)
|...+|++++.||+|++|
T Consensus 715 P~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 715 PRQPWLFSAGADGTIRLF 732 (733)
T ss_pred CCCceEEecCCCceEEee
Confidence 999999999999999998
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-20 Score=183.13 Aligned_cols=276 Identities=13% Similarity=0.184 Sum_probs=210.9
Q ss_pred CCCcceeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeE
Q 001248 346 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR 425 (1114)
Q Consensus 346 ~~~~~~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~ 425 (1114)
+.|.++..++.|.. -.|+.||+.|.+ ||+|..||.|.|||+.|...-+ ++.+|..+|.+
T Consensus 12 ~~PEel~~tld~~~-a~~~~Fs~~G~~-lAvGc~nG~vvI~D~~T~~iar-------------------~lsaH~~pi~s 70 (405)
T KOG1273|consen 12 EYPEELTHTLDNPL-AECCQFSRWGDY-LAVGCANGRVVIYDFDTFRIAR-------------------MLSAHVRPITS 70 (405)
T ss_pred cChHhhceeccCCc-cceEEeccCcce-eeeeccCCcEEEEEccccchhh-------------------hhhccccceeE
Confidence 45677778888777 899999999995 9999999999999998854322 68999999999
Q ss_pred EEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEe
Q 001248 426 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 505 (1114)
Q Consensus 426 l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 505 (1114)
++||+||+.|++++.|..|.+||+..|.+++++ ....+|+.+.|.|-..+..+++ -.+..-.+-++..++. ..+
T Consensus 71 l~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri----rf~spv~~~q~hp~k~n~~va~-~~~~sp~vi~~s~~~h-~~L 144 (405)
T KOG1273|consen 71 LCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI----RFDSPVWGAQWHPRKRNKCVAT-IMEESPVVIDFSDPKH-SVL 144 (405)
T ss_pred EEecCCCCEeeeecCCceeEEEeccCCCceeEE----EccCccceeeeccccCCeEEEE-EecCCcEEEEecCCce-eec
Confidence 999999999999999999999999999977643 2467999999999877644444 3344455555554321 111
Q ss_pred ec-cccC--EEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCC-CeeEEEEEecCCCeEEeeecccce----
Q 001248 506 EG-HEAP--VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG-RWCTTMAYSADGTRTYQGFRKRSL---- 577 (1114)
Q Consensus 506 ~~-h~~~--v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~~g~~~~~~~~~~~v---- 577 (1114)
.. ..+. +.+-+-.++..|+++++|...|.+.++|..+.+++..+.... ..|..+.++..|+.++....+..+
T Consensus 145 p~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye 224 (405)
T KOG1273|consen 145 PKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYE 224 (405)
T ss_pred cCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEe
Confidence 11 1111 111111256677999999999999999999998888777666 788889999888865554444333
Q ss_pred ----------------------------eEEEecCCCCEEEEEe-CCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcC
Q 001248 578 ----------------------------GVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 628 (1114)
Q Consensus 578 ----------------------------~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 628 (1114)
..++|+.+|.++++++ .-..++||....|.+++.+.+..+ .....+.|.|
T Consensus 225 ~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kg-E~l~DV~whp 303 (405)
T KOG1273|consen 225 ISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKG-EELLDVNWHP 303 (405)
T ss_pred hhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCch-hheeeccccc
Confidence 2378899999998877 467799999999999999977653 3567889999
Q ss_pred CCCEEEEEeCCCcEEEEEccCC
Q 001248 629 DGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 629 d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
-...+++- ..|.+++|.....
T Consensus 304 ~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 304 VRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred ceeeeeec-cCCceEEEEeecc
Confidence 88777776 6799999987544
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.1e-21 Score=195.31 Aligned_cols=247 Identities=15% Similarity=0.247 Sum_probs=188.6
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCC-eE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS-LF 435 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-~l 435 (1114)
-.+.|++|.|+|... +|.+++.||+++||.++......... +.--..+|.+.+|.|+|. .+
T Consensus 212 s~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~lqS-----------------~~l~~fPi~~a~f~p~G~~~i 273 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKLQS-----------------IHLEKFPIQKAEFAPNGHSVI 273 (514)
T ss_pred CcCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhhee-----------------eeeccCccceeeecCCCceEE
Confidence 357899999999999 68999999999999997543221111 112245899999999999 88
Q ss_pred EEEeCCCeEEEEEccCCceeeeeEeecccc-CCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEE
Q 001248 436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 514 (1114)
Q Consensus 436 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~-~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 514 (1114)
++++.....+.||+.+.+.. ++..+.++. ..+.....|++++ +|+..|..|.|.+-...+++.+.+++ ..+.|..
T Consensus 274 ~~s~rrky~ysyDle~ak~~-k~~~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~ 349 (514)
T KOG2055|consen 274 FTSGRRKYLYSYDLETAKVT-KLKPPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSD 349 (514)
T ss_pred EecccceEEEEeeccccccc-cccCCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEee
Confidence 99999999999999987744 333455554 3678889999999 79999999999999999999999887 6788999
Q ss_pred EeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeC
Q 001248 515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 594 (1114)
Q Consensus 515 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 594 (1114)
++|+ .++..|++.+.+|.|.+||++...++..+...+. | .-..++.++++.+|++|+.
T Consensus 350 ~~fs--Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~-v-------------------~gts~~~S~ng~ylA~GS~ 407 (514)
T KOG2055|consen 350 FTFS--SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGS-V-------------------HGTSLCISLNGSYLATGSD 407 (514)
T ss_pred EEEe--cCCcEEEEEcCCceEEEEecCCcceEEEEeecCc-c-------------------ceeeeeecCCCceEEeccC
Confidence 9986 5668899999999999999998766555443322 1 1123445556668999999
Q ss_pred CCeEEEEECCC------cceEEEeccCCCCCCcCeEEEcCCCCEEEEEeC--CCcEEEEEccC
Q 001248 595 DFSIKFWDMDS------VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN--DNGIKILATSD 649 (1114)
Q Consensus 595 dg~i~iwd~~~------~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~--dg~i~iwd~~~ 649 (1114)
.|.|.|||..+ .+++..+.. -...|+++.|++|+++|+.++. +..+++-.+.+
T Consensus 408 ~GiVNIYd~~s~~~s~~PkPik~~dN--Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS 468 (514)
T KOG2055|consen 408 SGIVNIYDGNSCFASTNPKPIKTVDN--LTTAITSLQFNHDAQILAIASRVKKNALRLVHVPS 468 (514)
T ss_pred cceEEEeccchhhccCCCCchhhhhh--hheeeeeeeeCcchhhhhhhhhccccceEEEeccc
Confidence 99999999653 344444432 2456899999999999998876 45666665543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-20 Score=199.34 Aligned_cols=455 Identities=11% Similarity=0.116 Sum_probs=282.9
Q ss_pred CeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcc
Q 001248 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 501 (1114)
Q Consensus 422 ~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 501 (1114)
.|..++|-|||..|+.+.. ..+.|||.+.|..+. ++.+|.+.|+|++|+.||+ .+++|+.|+.|.+|+-+ -+-
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llq---tLKgHKDtVycVAys~dGk--rFASG~aDK~VI~W~~k-lEG 86 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQ---PLKGHKDTVYCVAYAKDGK--RFASGSADKSVIIWTSK-LEG 86 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCccccc---ccccccceEEEEEEccCCc--eeccCCCceeEEEeccc-ccc
Confidence 8999999999999888754 459999999998777 8999999999999999999 79999999999999844 222
Q ss_pred eeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEE
Q 001248 502 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581 (1114)
Q Consensus 502 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~ 581 (1114)
+..+ .|.+.|.|+.|+|-. ..|++++.. ..-+|..+.. .+........+.+.+
T Consensus 87 ~LkY-SH~D~IQCMsFNP~~--h~LasCsLs-dFglWS~~qK-----------------------~V~K~kss~R~~~Cs 139 (1081)
T KOG1538|consen 87 ILKY-SHNDAIQCMSFNPIT--HQLASCSLS-DFGLWSPEQK-----------------------SVSKHKSSSRIICCS 139 (1081)
T ss_pred eeee-ccCCeeeEeecCchH--HHhhhcchh-hccccChhhh-----------------------hHHhhhhheeEEEee
Confidence 3333 399999999987655 678887753 2456644321 111111222455566
Q ss_pred ecCCCCEEEEEeCCCeEEEEECCCcceEEEecc-CCCCCCcCeEEEcCCC-----CEEEEEeCCCcEEEEEccCCcccee
Q 001248 582 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA-DGGLPASPRIRFNKDG-----CLLAVSTNDNGIKILATSDGIRLLR 655 (1114)
Q Consensus 582 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~d~-----~~l~~~~~dg~i~iwd~~~~~~~~~ 655 (1114)
|..||.+++.|-.+|+|.+-+. +++....+.. .+...+|.+++|+|.. ..+++.....++.++.+... . +.
T Consensus 140 WtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~-~-Ig 216 (1081)
T KOG1538|consen 140 WTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK-Q-IG 216 (1081)
T ss_pred ecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce-e-ec
Confidence 7777779999999999999975 4444444443 3345689999999953 46667777777777765432 1 11
Q ss_pred eccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCC
Q 001248 656 TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS 735 (1114)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~ 735 (1114)
.-+.- .|.| -...-++++++++.|+.|+.+.+|.-+...
T Consensus 217 k~r~L-------------~FdP----------------------------~CisYf~NGEy~LiGGsdk~L~~fTR~Gvr 255 (1081)
T KOG1538|consen 217 KDRAL-------------NFDP----------------------------CCISYFTNGEYILLGGSDKQLSLFTRDGVR 255 (1081)
T ss_pred ccccC-------------CCCc----------------------------hhheeccCCcEEEEccCCCceEEEeecCeE
Confidence 00000 1111 234557789999999999999999765422
Q ss_pred CCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCC---------------------CC----
Q 001248 736 EPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSS---------------------GK---- 790 (1114)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~---------------------~~---- 790 (1114)
.... ......|..++..|+++.++.++.||+|..|++...+...- ++
T Consensus 256 LGTv--------g~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrI 327 (1081)
T KOG1538|consen 256 LGTV--------GEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRI 327 (1081)
T ss_pred Eeec--------cccceeEEEEEEccCCceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeee
Confidence 1111 11567899999999999999999999999999764321100 00
Q ss_pred --------------ccc---cccccccCCCCCccccccCCCC-CCCCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccc
Q 001248 791 --------------ATA---SVAPQLWQPPSGIMMTNDVTDS-NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM 852 (1114)
Q Consensus 791 --------------~~~---~~~~~~w~~~~g~~~~~~~~~~-~~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~ 852 (1114)
.++ ...+.+|...++......++-. .-.....+--+--.+..++.+.+..+..+|...-+.
T Consensus 328 kC~DLVkKiaiYrnrLAVQLpeki~iYel~se~~~~mhY~v~ekI~kkf~cSLlVVc~~HiVlCqekrLqClDF~Gvk~- 406 (1081)
T KOG1538|consen 328 KCKDLVKKIAIYRNRLAVQLPEKILIYELYSEDLSDMHYRVKEKIIKKFECSLLVVCANHIVLCQEKRLQCLDFSGVKE- 406 (1081)
T ss_pred eHHHHHHHHHhhhhhheecccceEEEEeccccccccchhHHHHHHHhhccceEEEEEcCeEEEEcccceeeecccchhh-
Confidence 000 0122334333332211100000 000011111111234556666677777777653211
Q ss_pred cccCCCCCCeEEEEE--ecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 001248 853 ATFMPPPPAATFLAF--HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930 (1114)
Q Consensus 853 ~~~~~~~~~i~~l~~--sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd 930 (1114)
+... -.+-|.-+.. -|.+..-|+.|..||.|+-.=+...-++ -+......|.|+..+...+.||+....++..++|
T Consensus 407 ReW~-M~S~iRYikV~GGP~gREgL~vGlknGqV~kiF~dN~~Pi-Ll~~~~tAvrClDINA~R~kLAvVDD~~~c~v~D 484 (1081)
T KOG1538|consen 407 REWQ-MESLIRYIKVIGGPPGREGLLVGLKNGQVLKIFVDNLFPI-LLLKQATAVRCLDINASRKKLAVVDDNDTCLVYD 484 (1081)
T ss_pred hhhh-HHHHHHhhhhhcCCCCcceeEEEecCCcEEEEEecCCchh-heecccceeEEeeccCCcceEEEEccCCeEEEEE
Confidence 1110 0001111111 1224556788988887754333332222 1233456799999999999999999999999999
Q ss_pred CCCCccccccccccCCCCCCCCCCceEEEEccCCc-EEEEEeCCeEEE
Q 001248 931 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI-HFLVVHETQLAI 977 (1114)
Q Consensus 931 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~-~l~~~~d~~i~i 977 (1114)
+.+++.. .+.+ .+.+++|..... +|+.+..|.+.|
T Consensus 485 I~t~elL----~QEp--------g~nSV~wNT~~E~MlcfT~~g~L~V 520 (1081)
T KOG1538|consen 485 IDTKELL----FQEP--------GANSVAWNTQCEDMLCFTGGGYLNV 520 (1081)
T ss_pred ccCCceE----eecC--------CCceEEeeccccceEEEecCCceEE
Confidence 9996542 2221 568899987544 333344454443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.1e-20 Score=194.59 Aligned_cols=253 Identities=12% Similarity=0.164 Sum_probs=194.5
Q ss_pred CceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEe
Q 001248 360 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY 439 (1114)
Q Consensus 360 ~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 439 (1114)
-|..++|-|||..|++.+ +..+.|||++.|..+. .+++|.+.|.|+|||.||+++|+|+
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG~llq-------------------tLKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDGTLLQ-------------------PLKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeCCCccccc-------------------ccccccceEEEEEEccCCceeccCC
Confidence 789999999999866543 5789999999998877 5899999999999999999999999
Q ss_pred CCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeecc
Q 001248 440 SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHH 519 (1114)
Q Consensus 440 ~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 519 (1114)
.|+.|.||+-+-...++ -.|.+.|.||.|.|-.. .++|++.. ..-+|..+.....+ .+ ....+.+++|
T Consensus 73 aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsLs-dFglWS~~qK~V~K-~k-ss~R~~~CsW-- 140 (1081)
T KOG1538|consen 73 ADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSLS-DFGLWSPEQKSVSK-HK-SSSRIICCSW-- 140 (1081)
T ss_pred CceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcchh-hccccChhhhhHHh-hh-hheeEEEeee--
Confidence 99999999976544333 25999999999999998 68888753 46688865433221 11 2345556665
Q ss_pred CCCceEEEEEecCCeEEEEEcCCCCCeeeecC---CCCeeEEEEEecCCC------------------eEEeeec-----
Q 001248 520 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEA---PGRWCTTMAYSADGT------------------RTYQGFR----- 573 (1114)
Q Consensus 520 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~---~~~~v~~~~~s~~g~------------------~~~~~~~----- 573 (1114)
..||.+++.|-.+|+|.+-+-.. +....+.. ...+|.+++|+|... +.+.|..
T Consensus 141 tnDGqylalG~~nGTIsiRNk~g-Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r 219 (1081)
T KOG1538|consen 141 TNDGQYLALGMFNGTISIRNKNG-EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDR 219 (1081)
T ss_pred cCCCcEEEEeccCceEEeecCCC-CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccc
Confidence 56789999999999999886543 33333333 456899999998754 1111111
Q ss_pred --ccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccC
Q 001248 574 --KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 649 (1114)
Q Consensus 574 --~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~ 649 (1114)
+-...|+.+.++|.+++.|+.|+.+.+|-. .|-.+.++... ..+|..++..|++++++.|..||+|..|++..
T Consensus 220 ~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~--D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 220 ALNFDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQ--DSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred cCCCCchhheeccCCcEEEEccCCCceEEEee-cCeEEeecccc--ceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 113456788899999999999999999974 56666666543 34899999999999999999999999998753
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.8e-20 Score=178.09 Aligned_cols=268 Identities=19% Similarity=0.376 Sum_probs=190.2
Q ss_pred ccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCc----ceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEE
Q 001248 462 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA----KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 537 (1114)
Q Consensus 462 ~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~ 537 (1114)
.+|.+-|.++.|.+-|+ .++||+.|++|+|||..... +....+.|.+.|..+.|.+..-|+.+++++.|+++.+
T Consensus 10 s~h~DlihdVs~D~~GR--RmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGR--RMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred cCCcceeeeeeecccCc--eeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence 47889999999999999 79999999999999976443 4456788999999999998888999999999999999
Q ss_pred EEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCC
Q 001248 538 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 617 (1114)
Q Consensus 538 wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 617 (1114)
|.-.. .....+ =+-|. ...++. ..
T Consensus 88 WEE~~----~~~~~~---------------------------------------------~~~Wv-----~~ttl~--Ds 111 (361)
T KOG2445|consen 88 WEEQE----KSEEAH---------------------------------------------GRRWV-----RRTTLV--DS 111 (361)
T ss_pred eeecc----cccccc---------------------------------------------cceeE-----EEEEee--cC
Confidence 95321 111111 11222 111222 11
Q ss_pred CCCcCeEEEcC--CCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhcccccccccc
Q 001248 618 LPASPRIRFNK--DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA 695 (1114)
Q Consensus 618 ~~~v~~~~~s~--d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1114)
...|+.+.|.| -|-.|++++.||.+|||+..+..
T Consensus 112 rssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~-------------------------------------------- 147 (361)
T KOG2445|consen 112 RSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPM-------------------------------------------- 147 (361)
T ss_pred CcceeEEEecchhcceEEEEeccCcEEEEEecCCcc--------------------------------------------
Confidence 34688999998 57899999999999999875441
Q ss_pred ccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceE
Q 001248 696 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH 775 (1114)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i 775 (1114)
.+.-|.+.. .+..+. .|-++
T Consensus 148 -----------------------------nLs~W~Lq~-----Ei~~~~---------------~pp~~----------- 167 (361)
T KOG2445|consen 148 -----------------------------NLSQWTLQH-----EIQNVI---------------DPPGK----------- 167 (361)
T ss_pred -----------------------------ccccchhhh-----hhhhcc---------------CCccc-----------
Confidence 111122211 000000 01010
Q ss_pred EEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEee---CCCEEEEEeCC------eEEEEEc
Q 001248 776 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK---NDSYVMSASGG------KISLFNM 846 (1114)
Q Consensus 776 ~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~---d~~~l~~~~dg------~i~iwd~ 846 (1114)
+..+..|+.|++ ...+||+|+|. .+.||..
T Consensus 168 -----------------------------------------~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~ 206 (361)
T KOG2445|consen 168 -----------------------------------------NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEY 206 (361)
T ss_pred -----------------------------------------ccCcceEEeeccccccCceEEEEcccCCccccceEEEEe
Confidence 223334444443 23467777754 7888876
Q ss_pred CCC----ccccccCCCCCCeEEEEEecCCC---cEEEEEeCCCcEEEEEccc--------------------ceEEEeec
Q 001248 847 MTF----KTMATFMPPPPAATFLAFHPQDN---NIIAIGMDDSSIQIYNVRV--------------------DEVKSKLK 899 (1114)
Q Consensus 847 ~~~----~~~~~~~~~~~~i~~l~~sp~d~---~~la~g~~dg~v~iwd~~~--------------------~~~~~~l~ 899 (1114)
... ..+.++.+|..+|+.++|.|.-| .+||+++.|| |+||.+.. -+.+..+.
T Consensus 207 ~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~ 285 (361)
T KOG2445|consen 207 NENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELD 285 (361)
T ss_pred cCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeecc
Confidence 533 24566889999999999999544 5899999999 99999873 13456678
Q ss_pred ccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001248 900 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 933 (1114)
Q Consensus 900 ~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~ 933 (1114)
+|.+.|+.+.|+-.|..|+|.|.||+|++|...-
T Consensus 286 ~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 286 DHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred CCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 9999999999999999999999999999997654
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-22 Score=216.90 Aligned_cols=232 Identities=16% Similarity=0.250 Sum_probs=203.7
Q ss_pred CCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEE
Q 001248 817 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 895 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~ 895 (1114)
|...+.++..-..++.+++|+ |..+-+|.+.....+..+.+|..+|.++.|++ +..+|++|+.+|+|++||++.++.+
T Consensus 27 hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~-~E~LlaagsasgtiK~wDleeAk~v 105 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDT-SERLLAAGSASGTIKVWDLEEAKIV 105 (825)
T ss_pred hhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCc-chhhhcccccCCceeeeehhhhhhh
Confidence 677788888777888999998 78888999988888888999999999999999 8999999999999999999999999
Q ss_pred EeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCe
Q 001248 896 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQ 974 (1114)
Q Consensus 896 ~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~ 974 (1114)
+.|.||...+.+|.|+|-+.+.|+|+.|..+++||+.... |.....+|. ..+..+.|+|+|++++.+ .|..
T Consensus 106 rtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G-----c~~~~~s~~---~vv~~l~lsP~Gr~v~~g~ed~t 177 (825)
T KOG0267|consen 106 RTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG-----CSHTYKSHT---RVVDVLRLSPDGRWVASGGEDNT 177 (825)
T ss_pred hhhhccccCcceeeeccceEEeccccccccceehhhhccC-----ceeeecCCc---ceeEEEeecCCCceeeccCCcce
Confidence 9999999999999999999999999999999999998632 455555554 478899999999999995 6699
Q ss_pred EEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEE
Q 001248 975 LAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIA 1054 (1114)
Q Consensus 975 i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 1054 (1114)
++|||...|+....|. .|...+.++.|.|..-++++|+.|++|++||+++.+++....+. ..+ |. +..
T Consensus 178 vki~d~~agk~~~ef~--~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~---~~~-----v~--~~~ 245 (825)
T KOG0267|consen 178 VKIWDLTAGKLSKEFK--SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE---TDG-----VR--SLA 245 (825)
T ss_pred eeeecccccccccccc--cccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc---cCC-----ce--eee
Confidence 9999999999999887 78999999999999999999999999999999999999877633 222 44 899
Q ss_pred ecCCCCCeEEEEeCCC
Q 001248 1055 AHPQEPNEFALGLSDG 1070 (1114)
Q Consensus 1055 ~~~~d~~~l~s~~~Dg 1070 (1114)
|.| ++..+.+|..+.
T Consensus 246 fn~-~~~~~~~G~q~s 260 (825)
T KOG0267|consen 246 FNP-DGKIVLSGEQIS 260 (825)
T ss_pred ecC-CceeeecCchhh
Confidence 999 688888776554
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-20 Score=200.04 Aligned_cols=290 Identities=12% Similarity=0.112 Sum_probs=205.1
Q ss_pred ceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEE
Q 001248 764 NAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKIS 842 (1114)
Q Consensus 764 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~ 842 (1114)
..|+.+-++|.|.++|.....+. ++...+.. . ..|...|..+.+-|....|++++ |.+++
T Consensus 65 HiLavadE~G~i~l~dt~~~~fr---------------~ee~~lk~--~--~aH~nAifDl~wapge~~lVsasGDsT~r 125 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVFR---------------LEERQLKK--P--LAHKNAIFDLKWAPGESLLVSASGDSTIR 125 (720)
T ss_pred ceEEEecCCCceeeecchhhhcc---------------hhhhhhcc--c--ccccceeEeeccCCCceeEEEccCCceee
Confidence 35677778899999987643332 11111111 1 13899999999999667788887 89999
Q ss_pred EEEcCCCccccc--cCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccce---------------------------
Q 001248 843 LFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE--------------------------- 893 (1114)
Q Consensus 843 iwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~--------------------------- 893 (1114)
+||+++.++... +.+|...|.+++|.|.+...+++|+.||.|.|||+.-..
T Consensus 126 ~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~k 205 (720)
T KOG0321|consen 126 PWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKK 205 (720)
T ss_pred eeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhc
Confidence 999999888877 889999999999999889999999999999999985211
Q ss_pred EEEeecccccCeeE---EEEcCCCCEEEEEeC-CCcEEEEeCCCCcccc-ccccccCC--CCCCCCCCceEEEEccCCcE
Q 001248 894 VKSKLKGHSKRITG---LAFSHALNVLVSSGA-DSQLCVWSSDGWEKQK-NRFLQIPT--GRTPTAQSDTRVQFHQDQIH 966 (1114)
Q Consensus 894 ~~~~l~~h~~~V~~---l~~s~d~~~l~s~s~-D~~v~iwd~~~~~~~~-~~~~~~~~--~~~~~~~~i~~v~fspdg~~ 966 (1114)
.+....+|...|.+ +.+..|...||++|. |+.|+|||+....... ........ .+......+.++.....|.+
T Consensus 206 r~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~ 285 (720)
T KOG0321|consen 206 RIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTY 285 (720)
T ss_pred cccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCe
Confidence 11223345556665 666678899999988 9999999998754322 11111111 12222235566777777888
Q ss_pred EEE-EeCCeEEEEEcCCCceeeeeecCCCC--cCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCC
Q 001248 967 FLV-VHETQLAIFETTKLECVKQWVPRESS--APITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV 1043 (1114)
Q Consensus 967 l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~--~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~ 1043 (1114)
|.+ +.|+.|+.|++.+...-......++. .--..-..+||+.+|++|+.|..+++|.+.+.+.--.+. + ||
T Consensus 286 L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l----~--Gh 359 (720)
T KOG0321|consen 286 LFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL----L--GH 359 (720)
T ss_pred EEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh----h--Cc
Confidence 877 79999999999876543332222221 111223469999999999999999999998876542222 2 33
Q ss_pred CCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1044 SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1044 ~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
. +.+.+++|.|.+-.-++++++|..+++|++..+-
T Consensus 360 t---~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 360 T---REVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred c---eEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 2 3344788888666668899999999999997654
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.9e-22 Score=213.35 Aligned_cols=205 Identities=19% Similarity=0.306 Sum_probs=181.5
Q ss_pred ccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEe
Q 001248 416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495 (1114)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd 495 (1114)
+..|...|.|+..-..++.+++|+.|..+-+|.+..-..+. .+.+|..+|.++.|+++.. +|++|+.+|+|++||
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---SLTGHESPIESLTFDTSER--LLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---eeeccCCcceeeecCcchh--hhcccccCCceeeee
Confidence 45688899999987789999999999999999987654443 6889999999999999988 899999999999999
Q ss_pred CCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeeccc
Q 001248 496 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 575 (1114)
Q Consensus 496 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~ 575 (1114)
++.++.++++.||...+.++.|+|.. .+.++|+.|+.+++||.+..++...+..|...+..+.|+|+|+
T Consensus 99 leeAk~vrtLtgh~~~~~sv~f~P~~--~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr--------- 167 (825)
T KOG0267|consen 99 LEEAKIVRTLTGHLLNITSVDFHPYG--EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGR--------- 167 (825)
T ss_pred hhhhhhhhhhhccccCcceeeeccce--EEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCc---------
Confidence 99999999999999999999987654 7899999999999999998888888877776666666666665
Q ss_pred ceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 576 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 576 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
+++.+++|.+++|||...|+.+..|..|.. .+..+.|+|..-+++.|+.|+++++||+++-
T Consensus 168 ------------~v~~g~ed~tvki~d~~agk~~~ef~~~e~--~v~sle~hp~e~Lla~Gs~d~tv~f~dletf 228 (825)
T KOG0267|consen 168 ------------WVASGGEDNTVKIWDLTAGKLSKEFKSHEG--KVQSLEFHPLEVLLAPGSSDRTVRFWDLETF 228 (825)
T ss_pred ------------eeeccCCcceeeeecccccccccccccccc--cccccccCchhhhhccCCCCceeeeecccee
Confidence 799999999999999999999999987644 6889999999999999999999999998654
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.3e-21 Score=205.99 Aligned_cols=283 Identities=15% Similarity=0.245 Sum_probs=206.9
Q ss_pred CcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEcc-CcceeeecccCceEEEEeecccccCCCCCcc
Q 001248 714 VKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTN-SGNAILALASNAIHLLWKWQRTERNSSGKAT 792 (1114)
Q Consensus 714 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 792 (1114)
...++.++. ...++|.++.......+..-.-..+...-.+..+.+.. +.++|++++.+|.|.+||+.....
T Consensus 51 ~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r------- 122 (839)
T KOG0269|consen 51 INQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIR------- 122 (839)
T ss_pred cceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCcccc-------
Confidence 333444332 45566666654433333211100011122334455543 466788999999999999874211
Q ss_pred ccccccccCCCCCccccccCCCCCCCCCccEEEEeeCC-CEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecC
Q 001248 793 ASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND-SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ 870 (1114)
Q Consensus 793 ~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~-~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~ 870 (1114)
...+. .+. .|...+.++.|++-. .+|++|+ ||+|++||++..+-..++.+....|+.|+|+|.
T Consensus 123 ------------nk~l~-~f~--EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~ 187 (839)
T KOG0269|consen 123 ------------NKLLT-VFN--EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPG 187 (839)
T ss_pred ------------chhhh-Hhh--hhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccC
Confidence 11111 122 289999999998755 4677888 999999999998888888888889999999998
Q ss_pred CCcEEEEEeCCCcEEEEEccc-ceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCC
Q 001248 871 DNNIIAIGMDDSSIQIYNVRV-DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT 949 (1114)
Q Consensus 871 d~~~la~g~~dg~v~iwd~~~-~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~ 949 (1114)
.+..++++.+.|.+++||++. .++...+.+|.++|.++.|+|++.+|||||+|++|+|||+.+.+.....+++..
T Consensus 188 ~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTi---- 263 (839)
T KOG0269|consen 188 YGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTI---- 263 (839)
T ss_pred CCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeec----
Confidence 899999999999999999986 456678899999999999999999999999999999999998666554444433
Q ss_pred CCCCCceEEEEccCCcEE-EE---EeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECC-CCCEEEEEEcCCeEEEEEc
Q 001248 950 PTAQSDTRVQFHQDQIHF-LV---VHETQLAIFETTKLECVKQWVPRESSAPITHATFSC-DSQLVYACFLDATVCVFSA 1024 (1114)
Q Consensus 950 ~~~~~i~~v~fspdg~~l-~~---~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~s~Dg~I~vwd~ 1024 (1114)
.++.++.|-|+..+. |+ ..|..|.|||++..-..... ...|...++.++|.. |...|.+++.||+|..-.+
T Consensus 264 ---apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t-~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~ 339 (839)
T KOG0269|consen 264 ---APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYAT-FLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLF 339 (839)
T ss_pred ---ceeeeeeeccCccchhhhhhccccceEEEEeecccccccee-eeccCccccceeccCCCceeeEeecCccHHHHhhh
Confidence 478999999987664 44 26789999999865443332 237899999999965 5567899999998877665
Q ss_pred CCC
Q 001248 1025 ANL 1027 (1114)
Q Consensus 1025 ~~~ 1027 (1114)
.++
T Consensus 340 kna 342 (839)
T KOG0269|consen 340 KNA 342 (839)
T ss_pred hcc
Confidence 544
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-19 Score=190.75 Aligned_cols=322 Identities=14% Similarity=0.266 Sum_probs=230.2
Q ss_pred EEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCC--EEEEEeCCCcEEEE
Q 001248 568 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC--LLAVSTNDNGIKIL 645 (1114)
Q Consensus 568 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~--~l~~~~~dg~i~iw 645 (1114)
++.||. +.+.++..+|.|.+|++|+.||+|+||.+.+|.++.++...+ .|.|++|+|.+. .|+++.. +.+.|.
T Consensus 395 vyrGHt-g~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~---~I~~vaw~P~~~~~vLAvA~~-~~~~iv 469 (733)
T KOG0650|consen 395 VYRGHT-GLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS---EIRSVAWNPLSDLCVLAVAVG-ECVLIV 469 (733)
T ss_pred eEeccC-CeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc---eeEEEEecCCCCceeEEEEec-CceEEe
Confidence 344444 478888999999999999999999999999999999998765 499999999664 3444444 346666
Q ss_pred EccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCccccc----cc
Q 001248 646 ATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRIT----EE 721 (1114)
Q Consensus 646 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~ 721 (1114)
+..-|.+..... . ...+.+ ..
T Consensus 470 np~~G~~~e~~~---t----------------------------------------------------~ell~~~~~~~~ 494 (733)
T KOG0650|consen 470 NPIFGDRLEVGP---T----------------------------------------------------KELLASAPNESE 494 (733)
T ss_pred Cccccchhhhcc---h----------------------------------------------------hhhhhcCCCccC
Confidence 544331111100 0 000111 11
Q ss_pred CCCceeEEEeccCCCCc--cccccccCccccccceEEEEEccCcceeeecccC---ceEEEEeecccccCCCCCcccccc
Q 001248 722 SNDKSKVWKLTELSEPN--QCRSLRLPENLRATKISRLIFTNSGNAILALASN---AIHLLWKWQRTERNSSGKATASVA 796 (1114)
Q Consensus 722 ~d~~i~iw~~~~~~~~~--~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~ 796 (1114)
.+..+..|.-....... .+..+ .|...|..+.|+..|.+|++...+ ..|.|+++.....
T Consensus 495 p~~~~~~W~~~~~~e~~~~v~~~I-----~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s----------- 558 (733)
T KOG0650|consen 495 PDAAVVTWSRASLDELEKGVCIVI-----KHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS----------- 558 (733)
T ss_pred CcccceeechhhhhhhccceEEEE-----ecCCccceeeeecCCceEEEeccCCCcceEEEEecccccc-----------
Confidence 23355566544222211 12222 277899999999999999987774 5677777653211
Q ss_pred ccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEE
Q 001248 797 PQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIA 876 (1114)
Q Consensus 797 ~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la 876 (1114)
... +.. ..+.|.++.|+|...+|++++...|+|||+.....+..+......|..++.+| .|.-|+
T Consensus 559 --------Q~P----F~k--skG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GDnli 623 (733)
T KOG0650|consen 559 --------QSP----FRK--SKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGDNLI 623 (733)
T ss_pred --------cCc----hhh--cCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCCeEE
Confidence 011 111 45678899999999999999999999999999888888888888999999999 888899
Q ss_pred EEeCCCcEEEEEcccc-eEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCc
Q 001248 877 IGMDDSSIQIYNVRVD-EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD 955 (1114)
Q Consensus 877 ~g~~dg~v~iwd~~~~-~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 955 (1114)
.|+.|+.+..||+.-. +..+.++.|...|++|+|++.-.+++||+.||++.|+--.-..- .++
T Consensus 624 ~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~D----l~q------------ 687 (733)
T KOG0650|consen 624 LGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYND----LLQ------------ 687 (733)
T ss_pred EecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehh----hhc------------
Confidence 9999999999999754 67788999999999999999999999999999999885321000 000
Q ss_pred eEEEEccCCcEEEEEeCCeEEEEEcCCCceeeeeecCCCC----cCeeEEEECCCCCEEEEEEcCCeEEEE
Q 001248 956 TRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESS----APITHATFSCDSQLVYACFLDATVCVF 1022 (1114)
Q Consensus 956 ~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~----~~v~~l~~s~dg~~l~s~s~Dg~I~vw 1022 (1114)
+-..+..-...+|. ..|....|.|..-+|++++.||+|++|
T Consensus 688 --------------------------npliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 688 --------------------------NPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred --------------------------CCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 00000011112443 348899999999999999999999998
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=186.23 Aligned_cols=254 Identities=19% Similarity=0.280 Sum_probs=191.9
Q ss_pred CCCCceEEEEcCCCC-eEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC-CCCe
Q 001248 357 QGSSPMSMDFHPVQQ-TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSL 434 (1114)
Q Consensus 357 h~~~v~~v~~spdg~-~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~ 434 (1114)
+...|++++|+|... .++|+|...|+|-+||+.+.+...... .++..|.++|.+|.|+| +-..
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v---------------~~f~~hs~~Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV---------------YLFTPHSGPVSGLKFSPANTSQ 249 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce---------------EEeccCCccccceEecCCChhh
Confidence 889999999999876 789999999999999996433322111 15789999999999999 6667
Q ss_pred EEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcc-eeEeeccccCEE
Q 001248 435 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK-QYIFEGHEAPVY 513 (1114)
Q Consensus 435 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~h~~~v~ 513 (1114)
+.+.+.||+|++-|++++.. .....+......+..+.|+.+.. .++.+..=|...+||.+++.. ...+.-|...|.
T Consensus 250 i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT 326 (498)
T ss_pred eeeeccCceeeeeeecchhh-HHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence 88899999999999987642 22223333455788899998888 577777777999999997655 556677889999
Q ss_pred EEeeccCCCceEEEEEecCCeEEEEEcCCCCCeee----ecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEE
Q 001248 514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD----YEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 589 (1114)
Q Consensus 514 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~----~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l 589 (1114)
+++++|-.. .+++++|.|++.++||++....... .-.|.. .|....|+|.+..|
T Consensus 327 sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hrr---------------------sV~sAyFSPs~gtl 384 (498)
T KOG4328|consen 327 SVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRR---------------------SVNSAYFSPSGGTL 384 (498)
T ss_pred eeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccc---------------------eeeeeEEcCCCCce
Confidence 999988755 7999999999999999987544332 222333 44555555555569
Q ss_pred EEEeCCCeEEEEEC----CCcceEEEeccCCCC---CCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 590 LAAGDDFSIKFWDM----DSVQLLTSIDADGGL---PASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 590 ~~~~~dg~i~iwd~----~~~~~~~~~~~~~~~---~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
++.+.|..|+|||. ....+..++...... -......|.|+..++++|-.-..|-|+|-..+
T Consensus 385 ~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~ 452 (498)
T KOG4328|consen 385 LTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG 452 (498)
T ss_pred EeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCC
Confidence 99999999999998 333444444322211 12346789999999999999889999987766
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.6e-20 Score=201.48 Aligned_cols=293 Identities=16% Similarity=0.196 Sum_probs=219.2
Q ss_pred cceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEee-CC
Q 001248 752 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-ND 830 (1114)
Q Consensus 752 ~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~-d~ 830 (1114)
..+..+...++-..++.++.. .+.||.+....+...-.. .. +... .-...+..+.|.. +.
T Consensus 40 ~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~--------~~---k~kq-------n~~~S~~DVkW~~~~~ 100 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNH--------RF---KTKQ-------NKFYSAADVKWGQLYS 100 (839)
T ss_pred cccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceee--------ec---cccc-------ceeeehhhcccccchh
Confidence 456677788888888877765 667777654433222111 10 0000 0112234455553 55
Q ss_pred CEEEEEe-CCeEEEEEcCC---CccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCee
Q 001248 831 SYVMSAS-GGKISLFNMMT---FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT 906 (1114)
Q Consensus 831 ~~l~~~~-dg~i~iwd~~~---~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~ 906 (1114)
++||+++ .|.|.+||+.. .+.+..|..|...++++.|++....+|++|+.||.|++||++..+-...+.+....|.
T Consensus 101 NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiR 180 (839)
T KOG0269|consen 101 NLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIR 180 (839)
T ss_pred hhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhh
Confidence 6889988 89999999986 5666788999999999999998889999999999999999999998899999999999
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCCCc
Q 001248 907 GLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLE 984 (1114)
Q Consensus 907 ~l~~s~-d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~~~ 984 (1114)
.|.|+| .+..++++...|.+++||+.... .+...+..|. +.|.++.|+|++.+||+ |.|+.|+|||..+.+
T Consensus 181 DV~fsp~~~~~F~s~~dsG~lqlWDlRqp~----r~~~k~~AH~---GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~ 253 (839)
T KOG0269|consen 181 DVKFSPGYGNKFASIHDSGYLQLWDLRQPD----RCEKKLTAHN---GPVLCLNWHPNREWLATGGRDKMVKIWDMTDSR 253 (839)
T ss_pred ceeeccCCCceEEEecCCceEEEeeccCch----hHHHHhhccc---CceEEEeecCCCceeeecCCCccEEEEeccCCC
Confidence 999998 46789999999999999998743 3444555555 58999999999999999 699999999998765
Q ss_pred eeeeeecCCCCcCeeEEEECCCCCE-EEEEE--cCCeEEEEEcCCC-eeeEEeCCCcccCCCCCCCCccceEEEecCCCC
Q 001248 985 CVKQWVPRESSAPITHATFSCDSQL-VYACF--LDATVCVFSAANL-KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEP 1060 (1114)
Q Consensus 985 ~~~~~~~~~h~~~v~~l~~s~dg~~-l~s~s--~Dg~I~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~ 1060 (1114)
....... ....+|.++.|-|+.++ ||+++ .|-.|+|||+... -+...+. .|.+. +. .++|...|.
T Consensus 254 ~~~~~tI-nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~-------eH~~~-vt--~i~W~~~d~ 322 (839)
T KOG0269|consen 254 AKPKHTI-NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFL-------EHTDS-VT--GIAWDSGDR 322 (839)
T ss_pred ccceeEE-eecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeee-------ccCcc-cc--ceeccCCCc
Confidence 5433332 22678999999999887 55554 4788999998642 2222222 22222 44 788888778
Q ss_pred CeEEEEeCCCcEEEEeccCCC
Q 001248 1061 NEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1061 ~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
..+.+++.||+|..-.+.++.
T Consensus 323 ~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 323 INLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred eeeEeecCccHHHHhhhhccc
Confidence 889999999999888777766
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.7e-19 Score=171.26 Aligned_cols=259 Identities=14% Similarity=0.235 Sum_probs=194.1
Q ss_pred cCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC--CCC
Q 001248 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGS 433 (1114)
Q Consensus 356 ~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~ 433 (1114)
+|.+-|.|+.|.+-|++ +||++.|++|.|||......--. .. .....|.+.|..|.|.+ =|+
T Consensus 11 ~h~DlihdVs~D~~GRR-mAtCSsDq~vkI~d~~~~s~~W~-------~T--------s~Wrah~~Si~rV~WAhPEfGq 74 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRR-MATCSSDQTVKIWDSTSDSGTWS-------CT--------SSWRAHDGSIWRVVWAHPEFGQ 74 (361)
T ss_pred CCcceeeeeeecccCce-eeeccCCCcEEEEeccCCCCceE-------Ee--------eeEEecCCcEEEEEecCccccc
Confidence 48899999999999998 99999999999999754332111 00 13578999999999976 699
Q ss_pred eEEEEeCCCeEEEEEcc------CCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcce-----
Q 001248 434 LFGVAYSRHIVQIYSYH------GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ----- 502 (1114)
Q Consensus 434 ~las~~~dg~i~iwd~~------~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~----- 502 (1114)
.+|+++.|+++.||.-. .+.......++......|++|.|.|.-..+.+++++.||.++||+.-...-+
T Consensus 75 vvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~L 154 (361)
T KOG2445|consen 75 VVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTL 154 (361)
T ss_pred eEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchh
Confidence 99999999999999752 1223344557778888999999999877779999999999999986543222
Q ss_pred -eEee-------ccccCEEEEeeccCCC-ceEEEEEecC-----CeEEEEEcCCCCC----eeeecCCCCeeEEEEEecC
Q 001248 503 -YIFE-------GHEAPVYSVCPHHKEN-IQFIFSTALD-----GKIKAWLYDNLGS----RVDYEAPGRWCTTMAYSAD 564 (1114)
Q Consensus 503 -~~~~-------~h~~~v~~~~~~~~~~-~~~l~s~~~d-----~~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~~ 564 (1114)
..++ .+..+..|+.|+++.- ..+|+.|+.+ +.++||....... ...+..+..+|+.++|.|+
T Consensus 155 q~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn 234 (361)
T KOG2445|consen 155 QHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN 234 (361)
T ss_pred hhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence 2222 4667788888876542 2466666665 4788998766542 2356778889999999997
Q ss_pred CCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcc-----------------eEEEec-cCCCCCCcCeEEE
Q 001248 565 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-----------------LLTSID-ADGGLPASPRIRF 626 (1114)
Q Consensus 565 g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------------~~~~~~-~~~~~~~v~~~~~ 626 (1114)
-.+-+ ..+++++.|| |+||++.... .+..+. ..+|...|..+.|
T Consensus 235 ~Gr~y-----------------~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~w 296 (361)
T KOG2445|consen 235 IGRSY-----------------HLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRW 296 (361)
T ss_pred cCCce-----------------eeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEE
Confidence 54322 2588899999 9999987311 122221 2344568999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcc
Q 001248 627 NKDGCLLAVSTNDNGIKILATS 648 (1114)
Q Consensus 627 s~d~~~l~~~~~dg~i~iwd~~ 648 (1114)
+-.|..|++.+.||.||+|...
T Consensus 297 NmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 297 NMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred eeeeeEEeecCCCceeeehhhh
Confidence 9999999999999999999653
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-19 Score=181.06 Aligned_cols=267 Identities=15% Similarity=0.237 Sum_probs=195.2
Q ss_pred CCcceeEeccCCCCceEEEEcCCCC-eEEEEEecCCcEEEEEcCCcceeE-EeeeeeeccCCCCcccccccccCCCCCee
Q 001248 347 LPKTVTRTLNQGSSPMSMDFHPVQQ-TLLLVGTNVGDIGLWEVGSRERLV-LRNFKVWDLGACSMPLQAALVKDPGVSVN 424 (1114)
Q Consensus 347 ~~~~~~~~~~h~~~v~~v~~spdg~-~ll~tg~~dg~v~iwd~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~h~~~V~ 424 (1114)
.|..-.....|.+.++.+.-++-|+ .++|+=+..|.|.||++...-... .....+-+ ....+...+.+|.+.=.
T Consensus 140 ~P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy 215 (440)
T KOG0302|consen 140 KPQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGY 215 (440)
T ss_pred cccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCccce
Confidence 4555566777999999999988753 357777888999999985421110 00000001 11122235789999999
Q ss_pred EEEEcC-CCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCC---c
Q 001248 425 RVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG---A 500 (1114)
Q Consensus 425 ~l~~sp-dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~ 500 (1114)
+++||| .-..|++|..-+.|++|...+|.-......+.+|+..|-.++|||.... +|+|||.|++|+|||++.+ .
T Consensus 216 ~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~ 294 (440)
T KOG0302|consen 216 GLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKA 294 (440)
T ss_pred eeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccc
Confidence 999999 2334788888888999999987655444567889999999999999887 8999999999999999988 3
Q ss_pred ceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCC---CCeeeecCCCCeeEEEEEecCCCeEEeeecccce
Q 001248 501 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL---GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 577 (1114)
Q Consensus 501 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v 577 (1114)
++.+ +.|.+.|+.+.|+-.. .+|++|+.||++++||++.. .++..+..|..+|+++.|+|...
T Consensus 295 ~~~~-kAh~sDVNVISWnr~~--~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~----------- 360 (440)
T KOG0302|consen 295 AVST-KAHNSDVNVISWNRRE--PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHED----------- 360 (440)
T ss_pred eeEe-eccCCceeeEEccCCc--ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccC-----------
Confidence 3333 8899999999997554 49999999999999999864 34456777777777777777543
Q ss_pred eEEEecCCCCEEEEEeCCCeEEEEECCCcce----------------EEEeccCCCCCCcCeEEEcCC-CCEEEEEeCCC
Q 001248 578 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL----------------LTSIDADGGLPASPRIRFNKD-GCLLAVSTNDN 640 (1114)
Q Consensus 578 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----------------~~~~~~~~~~~~v~~~~~s~d-~~~l~~~~~dg 640 (1114)
..+++++.|.+|.+||+....- -+.+-.|.+...+..+.|++. ..++++.+-||
T Consensus 361 ---------s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG 431 (440)
T KOG0302|consen 361 ---------SVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG 431 (440)
T ss_pred ---------ceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence 3588899999999999853221 112233444567888999984 34667766666
Q ss_pred c
Q 001248 641 G 641 (1114)
Q Consensus 641 ~ 641 (1114)
.
T Consensus 432 f 432 (440)
T KOG0302|consen 432 F 432 (440)
T ss_pred e
Confidence 4
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.1e-19 Score=179.41 Aligned_cols=171 Identities=20% Similarity=0.265 Sum_probs=140.4
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
...+|..+.|.+++.-.+|||+.|..|+||-++.++.-.. .....+ ...+..|...|+++.|+|+|..||
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~---------~~~V~y-~s~Ls~H~~aVN~vRf~p~gelLA 81 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG---------DMKVEY-LSSLSRHTRAVNVVRFSPDGELLA 81 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCC---------ceeEEE-eecccCCcceeEEEEEcCCcCeee
Confidence 4578999999998874599999999999999976543220 000111 126899999999999999999999
Q ss_pred EEeCCCeEEEEEcc--------C-----CceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCccee
Q 001248 437 VAYSRHIVQIYSYH--------G-----GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY 503 (1114)
Q Consensus 437 s~~~dg~i~iwd~~--------~-----~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 503 (1114)
+|+++|.|.+|... + .+.......+.+|...|..++|+||+. ++++++.|.++++||+..|..+.
T Consensus 82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G~l~~ 159 (434)
T KOG1009|consen 82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAGQLLA 159 (434)
T ss_pred ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccceeEe
Confidence 99999999999876 3 222334457889999999999999999 89999999999999999999999
Q ss_pred EeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcC
Q 001248 504 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541 (1114)
Q Consensus 504 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~ 541 (1114)
.+.+|...|..++|.+-. +++++-+.|...+.+.+.
T Consensus 160 ~~~dh~~yvqgvawDpl~--qyv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 160 ILDDHEHYVQGVAWDPLN--QYVASKSSDRHPEGFSAK 195 (434)
T ss_pred eccccccccceeecchhh--hhhhhhccCcccceeeee
Confidence 999999999999986654 799999999866666554
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.4e-17 Score=190.52 Aligned_cols=371 Identities=25% Similarity=0.416 Sum_probs=268.0
Q ss_pred EeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcc-eeEEeeeeeeccCCCCcccccccccCCC-CCeeEEEE-c
Q 001248 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE-RLVLRNFKVWDLGACSMPLQAALVKDPG-VSVNRVIW-S 429 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~h~-~~V~~l~~-s 429 (1114)
....|...+.++.|.+.+.. ++.++.|+.+.+|+...+. ... .+.++. ..+..+.+ +
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~ 119 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGEL-LLSGSSDGTIKLWDLDNGEKLIK-------------------SLEGLHDSSVSKLALSS 119 (466)
T ss_pred eeeeccceEEEEEECCCCcE-EEEecCCCcEEEEEcCCCceeEE-------------------EEeccCCCceeeEEEEC
Confidence 44569999999999999995 7888889999999999876 322 123322 46777777 8
Q ss_pred CCCC-eEEEEeC-CCeEEEEEccC-CceeeeeEeeccccCCeeEEEecCCCCeeEEEEecC-CCCEEEEeCCCCcceeEe
Q 001248 430 PDGS-LFGVAYS-RHIVQIYSYHG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIF 505 (1114)
Q Consensus 430 pdg~-~las~~~-dg~i~iwd~~~-~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~ 505 (1114)
+++. +++..+. |+.+.+|+... ..... .+..|...|..++|+|++. .+++++. |+.+++|++..+..+..+
T Consensus 120 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (466)
T COG2319 120 PDGNSILLASSSLDGTVKLWDLSTPGKLIR---TLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTL 194 (466)
T ss_pred CCcceEEeccCCCCccEEEEEecCCCeEEE---EEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEee
Confidence 8888 5555444 89999999987 44343 6788999999999999999 6777775 999999999998999999
Q ss_pred eccccCEEEEeeccCCCce-EEEEEecCCeEEEEEcCCCCCee-eecCCCCeeEEEEEecCCCeEEeeecccceeEEEec
Q 001248 506 EGHEAPVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 583 (1114)
Q Consensus 506 ~~h~~~v~~~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~ 583 (1114)
.+|...|.+++|. +++. ++++++.|+.|++||........ .+..+.... .. .|+
T Consensus 195 ~~~~~~v~~~~~~--~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~---------------------~~~ 250 (466)
T COG2319 195 AGHTDPVSSLAFS--PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VS---------------------SFS 250 (466)
T ss_pred ccCCCceEEEEEc--CCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eE---------------------eEC
Confidence 9999999999987 4445 55666999999999877444333 233333322 11 455
Q ss_pred CCCCEEEEEeCCCeEEEEECCCcce-EEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeecccccc
Q 001248 584 TTKNRFLAAGDDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY 662 (1114)
Q Consensus 584 ~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 662 (1114)
+++..+++++.|+.+++|+...... +..+. .+...+.++.|+|++..+++++.|+.+.+|+..+... .....
T Consensus 251 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~---- 323 (466)
T COG2319 251 PDGSLLASGSSDGTIRLWDLRSSSSLLRTLS--GHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL-LSSLT---- 323 (466)
T ss_pred CCCCEEEEecCCCcEEEeeecCCCcEEEEEe--cCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCce-EEEee----
Confidence 5555788999999999999987665 44442 3355789999999888888899898899997655511 11000
Q ss_pred ccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccc
Q 001248 663 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS 742 (1114)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~ 742 (1114)
T Consensus 324 -------------------------------------------------------------------------------- 323 (466)
T COG2319 324 -------------------------------------------------------------------------------- 323 (466)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCcc
Q 001248 743 LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP 822 (1114)
Q Consensus 743 ~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~ 822 (1114)
... |...+.
T Consensus 324 ----~~~-------------------------------------------------------------------~~~~~~ 332 (466)
T COG2319 324 ----LKG-------------------------------------------------------------------HEGPVS 332 (466)
T ss_pred ----ecc-------------------------------------------------------------------cCCceE
Confidence 000 222233
Q ss_pred EEEEeeCCCEEEEE-e-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEE-EeCCCcEEEEEcccceEEEeec
Q 001248 823 CFALSKNDSYVMSA-S-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAI-GMDDSSIQIYNVRVDEVKSKLK 899 (1114)
Q Consensus 823 ~v~~s~d~~~l~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~-g~~dg~v~iwd~~~~~~~~~l~ 899 (1114)
.+.+.+++..++.+ . |+.+.+|+............. ..+..+.+++ + ..+.. +..++.+.+|+...........
T Consensus 333 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (466)
T COG2319 333 SLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLD 409 (466)
T ss_pred EEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCC-ceEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeecc
Confidence 33332122333333 2 566777777665522222211 2288889988 6 55554 8899999999999988777776
Q ss_pred ccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001248 900 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 933 (1114)
Q Consensus 900 ~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~ 933 (1114)
.+...+....+++++..+++++.++++++|+...
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 410 GHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 5547889999999999999999999999999987
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.9e-19 Score=182.12 Aligned_cols=295 Identities=19% Similarity=0.253 Sum_probs=209.0
Q ss_pred cccceEEEEEccCcc--eeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEe
Q 001248 750 RATKISRLIFTNSGN--AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 827 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s 827 (1114)
+..+|++++|.|..+ .+++|...|.|-+|++.......++ . +....|..+|.++.|+
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~----------------v-----~~f~~hs~~Vs~l~F~ 243 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDG----------------V-----YLFTPHSGPVSGLKFS 243 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCc----------------e-----EEeccCCccccceEec
Confidence 678999999999765 5666666799999998532211111 1 1122489999999999
Q ss_pred eCCC-EEEEEe-CCeEEEEEcCCCccccc--cCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccce-EEEeecccc
Q 001248 828 KNDS-YVMSAS-GGKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE-VKSKLKGHS 902 (1114)
Q Consensus 828 ~d~~-~l~~~~-dg~i~iwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~-~~~~l~~h~ 902 (1114)
|.+. .+.+.+ ||+|++-|+++...-.. +......+..+.|+. +...++.|..=|...+||+.++. ....+.-|.
T Consensus 244 P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~ 322 (498)
T KOG4328|consen 244 PANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHK 322 (498)
T ss_pred CCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhhh
Confidence 8553 455555 99999999987554333 333455678889988 55666667777799999999854 467788899
Q ss_pred cCeeEEEEcCCC-CEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEc
Q 001248 903 KRITGLAFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFET 980 (1114)
Q Consensus 903 ~~V~~l~~s~d~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~ 980 (1114)
..|++|+++|-. .+|||+|.|++++|||+..-.......+... .|. ..|.++.|||+|..|++ +.|..|+|||.
T Consensus 323 kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~-~Hr---rsV~sAyFSPs~gtl~TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 323 KKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTL-PHR---RSVNSAYFSPSGGTLLTTCQDNEIRVFDS 398 (498)
T ss_pred cccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecc-ccc---ceeeeeEEcCCCCceEeeccCCceEEeec
Confidence 999999999965 4689999999999999987443332122222 233 37999999998877887 79999999998
Q ss_pred C----CCceeeeeecC-CCCcC--eeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEE
Q 001248 981 T----KLECVKQWVPR-ESSAP--ITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVI 1053 (1114)
Q Consensus 981 ~----~~~~~~~~~~~-~h~~~--v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 1053 (1114)
. ......++.-. .+..+ .....|.||..++++|..-..|-|+|-..+++++.+. .|. ...|. -..
T Consensus 399 s~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~----~P~---~~tI~-~vn 470 (498)
T KOG4328|consen 399 SCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELH----DPE---SSTIP-SVN 470 (498)
T ss_pred ccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeecc----Ccc---ccccc-cce
Confidence 4 33333333211 11223 3456899999999999999999999999999888765 121 11122 246
Q ss_pred EecCCCCCeEEEEeCCCcEEEEecc
Q 001248 1054 AAHPQEPNEFALGLSDGGVHVFEPL 1078 (1114)
Q Consensus 1054 ~~~~~d~~~l~s~~~Dg~v~vW~i~ 1078 (1114)
.|+|-+..+++-++..|.|+||--.
T Consensus 471 ~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 471 EFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred eecccccceeccCCccceEEEEecC
Confidence 7999543355555667899988643
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-19 Score=176.59 Aligned_cols=298 Identities=16% Similarity=0.223 Sum_probs=206.1
Q ss_pred ccccceEEEEEcc----CcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCc-cccccCCCCCCCCCccE
Q 001248 749 LRATKISRLIFTN----SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI-MMTNDVTDSNPEEAVPC 823 (1114)
Q Consensus 749 ~~~~~i~~l~~s~----~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~-~~~~~~~~~~~~~~v~~ 823 (1114)
.|..+|..++|++ +...+++......+.+|+..... +. .+.. .....++.....
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~--------------------~ir~lq~-y~D~d~~Esfyt 94 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDG--------------------GIRLLQS-YADEDHDESFYT 94 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCcc--------------------ceeeeee-ccCCCCCcceEE
Confidence 4778899999974 33345555555677888764311 00 1111 122236667777
Q ss_pred EEEeeCC----CEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEee
Q 001248 824 FALSKND----SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL 898 (1114)
Q Consensus 824 v~~s~d~----~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l 898 (1114)
++|+-|- -++|+++ -|.|+|.|+.++++...+.+|...|..+.|.|.+.+++++++.|.+|++|++++..++..+
T Consensus 95 csw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~Vf 174 (385)
T KOG1034|consen 95 CSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVF 174 (385)
T ss_pred EEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEe
Confidence 7777543 3677776 7999999999999999999999999999999988899999999999999999999999887
Q ss_pred ---cccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccccccc-------------ccCCCCCCC-------CCCc
Q 001248 899 ---KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFL-------------QIPTGRTPT-------AQSD 955 (1114)
Q Consensus 899 ---~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-------------~~~~~~~~~-------~~~i 955 (1114)
.||.+.|.++.|+++|.+++|++.|.++++|++...+.....-. .....|.+. ...|
T Consensus 175 GG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyV 254 (385)
T KOG1034|consen 175 GGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYV 254 (385)
T ss_pred cccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchH
Confidence 56999999999999999999999999999999985432211000 000011110 0011
Q ss_pred eEEEEccCCcEEEE-EeCCeEEEEEcC-CCcee-------------eeeecCCCCcCeeEE--EECCCCCEEEEEEcCCe
Q 001248 956 TRVQFHQDQIHFLV-VHETQLAIFETT-KLECV-------------KQWVPRESSAPITHA--TFSCDSQLVYACFLDAT 1018 (1114)
Q Consensus 956 ~~v~fspdg~~l~~-~~d~~i~iwd~~-~~~~~-------------~~~~~~~h~~~v~~l--~~s~dg~~l~s~s~Dg~ 1018 (1114)
.++.|- |.++++ +.++.|..|..- -.+.+ ..+.. ....|.-+ +|.|-+++||.|...|.
T Consensus 255 DCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~--~~c~iWfirf~~d~~~~~la~gnq~g~ 330 (385)
T KOG1034|consen 255 DCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDY--PMCDIWFIRFAFDPWQKMLALGNQSGK 330 (385)
T ss_pred HHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEecc--CccceEEEEEeecHHHHHHhhccCCCc
Confidence 122221 577777 788899999872 22221 11111 13344444 55677889999999999
Q ss_pred EEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEecc
Q 001248 1019 VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1078 (1114)
Q Consensus 1019 I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~ 1078 (1114)
|++||++..+....-. +.+......|. ..+|+. |+.+|+..++|++|.-||.-
T Consensus 331 v~vwdL~~~ep~~~tt----l~~s~~~~tVR--Q~sfS~-dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 331 VYVWDLDNNEPPKCTT----LTHSKSGSTVR--QTSFSR-DGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEEECCCCCCccCce----EEeccccceee--eeeecc-cCcEEEEEeCCCcEEEEEee
Confidence 9999998877642111 11111122244 677887 79999999999999999864
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-19 Score=185.17 Aligned_cols=256 Identities=13% Similarity=0.168 Sum_probs=188.9
Q ss_pred CCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCc------ccccccccCCCCCeeEEEEcCC-CCeEEEEeCCC
Q 001248 370 QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSM------PLQAALVKDPGVSVNRVIWSPD-GSLFGVAYSRH 442 (1114)
Q Consensus 370 g~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~------~~~~~~~~~h~~~V~~l~~spd-g~~las~~~dg 442 (1114)
|.| +|.|+.|..|.|||+.--..+. ....++.-.. ........+|++.|.+++|+.+ ...||+||.|.
T Consensus 192 gNy-vAiGtmdp~IeIWDLDI~d~v~----P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~ 266 (463)
T KOG0270|consen 192 GNY-VAIGTMDPEIEIWDLDIVDAVL----PCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADK 266 (463)
T ss_pred cce-EEEeccCceeEEeccccccccc----cceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCc
Confidence 564 9999999999999986432211 0011110000 0011234589999999999884 55789999999
Q ss_pred eEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCccee-EeeccccCEEEEeeccCC
Q 001248 443 IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY-IFEGHEAPVYSVCPHHKE 521 (1114)
Q Consensus 443 ~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~h~~~v~~~~~~~~~ 521 (1114)
+|++||+.++++.. ++..|.+.|.+++|.|.... +|++|+.|++|.+.|.+...... .++ ..+.|..++|.+..
T Consensus 267 TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~s 341 (463)
T KOG0270|consen 267 TVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHS 341 (463)
T ss_pred eEEEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCC
Confidence 99999999999776 67789999999999998877 89999999999999998533322 222 55789999998765
Q ss_pred CceEEEEEecCCeEEEEEcCCC-CCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEE
Q 001248 522 NIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF 600 (1114)
Q Consensus 522 ~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 600 (1114)
. ..++++..||+++-+|++.. ++..++..|...|.+++++..-. +++++++.|+.|++
T Consensus 342 e-~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p--------------------~~l~t~s~d~~Vkl 400 (463)
T KOG0270|consen 342 E-NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTP--------------------GLLSTASTDKVVKL 400 (463)
T ss_pred c-eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCC--------------------cceeeccccceEEE
Confidence 4 57888899999999999987 67778899999999888877654 36888999999999
Q ss_pred EECCCcceEEEeccCCCCCCcCeEEEcCCC-CEEEEEeCCCcEEEEEccCCccceee
Q 001248 601 WDMDSVQLLTSIDADGGLPASPRIRFNKDG-CLLAVSTNDNGIKILATSDGIRLLRT 656 (1114)
Q Consensus 601 wd~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~~~~~dg~i~iwd~~~~~~~~~~ 656 (1114)
|++............-..+...|.++.|+- -.++.|+..+.+++||+.+.....+.
T Consensus 401 w~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ka 457 (463)
T KOG0270|consen 401 WKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRKA 457 (463)
T ss_pred EeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHHHh
Confidence 998654432222111112345677777754 45677888888999999887444443
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.6e-19 Score=183.35 Aligned_cols=212 Identities=17% Similarity=0.261 Sum_probs=168.7
Q ss_pred cCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CC
Q 001248 761 NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GG 839 (1114)
Q Consensus 761 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg 839 (1114)
....++++++.+++|+|||+.. +++.+.+++ |...|+++.++....|||+++ .|
T Consensus 89 s~S~y~~sgG~~~~Vkiwdl~~-----------------------kl~hr~lkd--h~stvt~v~YN~~DeyiAsvs~gG 143 (673)
T KOG4378|consen 89 SQSLYEISGGQSGCVKIWDLRA-----------------------KLIHRFLKD--HQSTVTYVDYNNTDEYIASVSDGG 143 (673)
T ss_pred hcceeeeccCcCceeeehhhHH-----------------------HHHhhhccC--CcceeEEEEecCCcceeEEeccCC
Confidence 3447889999999999988752 233333554 999999999999999999999 68
Q ss_pred eEEEEEcCCCccccccCCC-CCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEee-cccccCeeEEEEcCCC-CE
Q 001248 840 KISLFNMMTFKTMATFMPP-PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-KGHSKRITGLAFSHAL-NV 916 (1114)
Q Consensus 840 ~i~iwd~~~~~~~~~~~~~-~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l-~~h~~~V~~l~~s~d~-~~ 916 (1114)
.|.|..+.++....+|... ...|+-+.|+|....+|.+++++|.|.+||+.....+..+ ..|+.+..+|+|+|.+ .+
T Consensus 144 diiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l 223 (673)
T KOG4378|consen 144 DIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEAL 223 (673)
T ss_pred cEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccce
Confidence 8999999998887777654 3456799999966778889999999999999887666554 6799999999999965 57
Q ss_pred EEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCeEEEEEcCCCceeeeeecCCCC
Q 001248 917 LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESS 995 (1114)
Q Consensus 917 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~ 995 (1114)
||+.+.|..|.+||+....... ++. .. .+...++|+++|.+|++| ..|.|..||++..+..-... ..|.
T Consensus 224 ~vsVG~Dkki~~yD~~s~~s~~--~l~--y~-----~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~-sah~ 293 (673)
T KOG4378|consen 224 LVSVGYDKKINIYDIRSQASTD--RLT--YS-----HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVR-SAHD 293 (673)
T ss_pred EEEecccceEEEeecccccccc--eee--ec-----CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEe-eecc
Confidence 8899999999999998643211 111 11 357899999999999995 88999999998766543322 4788
Q ss_pred cCeeEEEECCCC
Q 001248 996 APITHATFSCDS 1007 (1114)
Q Consensus 996 ~~v~~l~~s~dg 1007 (1114)
..|++++|-|..
T Consensus 294 ~sVt~vafq~s~ 305 (673)
T KOG4378|consen 294 ASVTRVAFQPSP 305 (673)
T ss_pred cceeEEEeeecc
Confidence 899999997764
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.9e-19 Score=181.76 Aligned_cols=292 Identities=12% Similarity=0.182 Sum_probs=213.0
Q ss_pred cccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcce-eeecccCceEEEEeecccccCCCCCccccc
Q 001248 717 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA-ILALASNAIHLLWKWQRTERNSSGKATASV 795 (1114)
Q Consensus 717 l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 795 (1114)
+..++....+++||+........+.... ....+.++.|+..... ++..+.|..+++|.-...
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t-----~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~------------ 67 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQT-----AEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK------------ 67 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCC-----CCCcceeeeccccceEEEeecCCceeEEEecccCC------------
Confidence 4455666789999998876655544332 2334888888877642 334556788888864321
Q ss_pred cccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcE
Q 001248 796 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI 874 (1114)
Q Consensus 796 ~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~ 874 (1114)
++.+-..... ....-.|++......|+++|+ .++|+|||++...+.+.+++|...|+++.++- ...+
T Consensus 68 --------~~~Vp~~~k~---~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~Dey 135 (673)
T KOG4378|consen 68 --------TPEVPRVRKL---TGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDEY 135 (673)
T ss_pred --------CCccceeecc---ccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC-Ccce
Confidence 1111110011 122445555555568999998 89999999998778888999999999999998 7789
Q ss_pred EEEEeCCCcEEEEEcccceEEEeecccc-cCeeEEEEcCCCCE-EEEEeCCCcEEEEeCCCCccccccccccCCCCCCCC
Q 001248 875 IAIGMDDSSIQIYNVRVDEVKSKLKGHS-KRITGLAFSHALNV-LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA 952 (1114)
Q Consensus 875 la~g~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~s~d~~~-l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 952 (1114)
||+++..|.|.|..+.++.....|.... ..|.-+.|++..+. |.+++.+|.|.+||+..... .......|.
T Consensus 136 iAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp----~~~~~~~Hs--- 208 (673)
T KOG4378|consen 136 IASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP----IFHASEAHS--- 208 (673)
T ss_pred eEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc----ccchhhhcc---
Confidence 9999999999999999988777776543 44568899998765 56889999999999987432 233334444
Q ss_pred CCceEEEEccCCcEEEE--EeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCe-e
Q 001248 953 QSDTRVQFHQDQIHFLV--VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK-L 1029 (1114)
Q Consensus 953 ~~i~~v~fspdg~~l~~--~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~-~ 1029 (1114)
.+...++|+|....|++ |.|..|.+||+........+.. ..+.+.++|+++|.+|++|+..|.|+.||+...+ .
T Consensus 209 AP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y---~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~P 285 (673)
T KOG4378|consen 209 APCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY---SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAP 285 (673)
T ss_pred CCcCcceecCCccceEEEecccceEEEeecccccccceeee---cCCcceeeecCCceEEEeecCCceEEEEecccCCCC
Confidence 36788999998766655 7999999999997777666653 5689999999999999999999999999997655 3
Q ss_pred eEEeCCCcccCCCCCCCCccceEEEecC
Q 001248 1030 RCRINPSAYLPAGVSSSNVHPLVIAAHP 1057 (1114)
Q Consensus 1030 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 1057 (1114)
+..+. .|... |. +++|-|
T Consensus 286 v~v~s-------ah~~s-Vt--~vafq~ 303 (673)
T KOG4378|consen 286 VAVRS-------AHDAS-VT--RVAFQP 303 (673)
T ss_pred ceEee-------ecccc-ee--EEEeee
Confidence 43333 22233 55 777776
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.2e-19 Score=179.33 Aligned_cols=196 Identities=16% Similarity=0.235 Sum_probs=156.2
Q ss_pred CCCeEEEEeCCCeEEEEEccCCceeeeeEe------------------eccccCCeeEEEecCCCCeeEEEEecCCCCEE
Q 001248 431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLE------------------IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 492 (1114)
Q Consensus 431 dg~~las~~~dg~i~iwd~~~~~~~~~~~~------------------l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~ 492 (1114)
-|.|+|.|+.|..|.|||+.--..+.+... -.+|+..|.+++|+.+-+. +|++||.|.+|+
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~n-VLaSgsaD~TV~ 269 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRN-VLASGSADKTVK 269 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccce-eEEecCCCceEE
Confidence 377999999999999999864322222222 2379999999999998877 899999999999
Q ss_pred EEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeee
Q 001248 493 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF 572 (1114)
Q Consensus 493 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~ 572 (1114)
+||+.+|++..++..|.+.|.++.|++.. ..+|++|+.|+++.+.|.+........-...+.|..++|.+...
T Consensus 270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~-p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se------ 342 (463)
T KOG0270|consen 270 LWDVDTGKPKSSITHHGKKVQTLEWHPYE-PSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSE------ 342 (463)
T ss_pred EEEcCCCCcceehhhcCCceeEEEecCCC-ceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCc------
Confidence 99999999999999999999999998764 48999999999999999985333222222233444555544433
Q ss_pred cccceeEEEecCCCCEEEEEeCCCeEEEEECCCc-ceEEEeccCCCCCCcCeEEEcC-CCCEEEEEeCCCcEEEEEccCC
Q 001248 573 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 573 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
..++++..||+|+-+|++.. +++.++..|.. .|.++++++ .-.++++++.|+.+++|++...
T Consensus 343 --------------~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~--~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~ 406 (463)
T KOG0270|consen 343 --------------NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDD--EISGLSVNIQTPGLLSTASTDKVVKLWKFDVD 406 (463)
T ss_pred --------------eeEEEecCCceEEeeecCCCCCceeEEEeccC--CcceEEecCCCCcceeeccccceEEEEeecCC
Confidence 45788889999999999875 88999988855 899999998 4567889999999999998654
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.5e-19 Score=175.90 Aligned_cols=224 Identities=20% Similarity=0.315 Sum_probs=163.0
Q ss_pred cceeEeccCCCCceEEEEcC--CCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEE
Q 001248 349 KTVTRTLNQGSSPMSMDFHP--VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV 426 (1114)
Q Consensus 349 ~~~~~~~~h~~~v~~v~~sp--dg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l 426 (1114)
..+...-+|...=.+++||| .|+ |++|..-+.|++|...+|.-.. ...-+.+|+..|-.+
T Consensus 202 ~Pl~t~~ghk~EGy~LdWSp~~~g~--LlsGDc~~~I~lw~~~~g~W~v----------------d~~Pf~gH~~SVEDL 263 (440)
T KOG0302|consen 202 RPLFTFNGHKGEGYGLDWSPIKTGR--LLSGDCVKGIHLWEPSTGSWKV----------------DQRPFTGHTKSVEDL 263 (440)
T ss_pred CceEEecccCccceeeecccccccc--cccCccccceEeeeeccCceee----------------cCccccccccchhhh
Confidence 33444445999999999999 454 8888888999999998865332 112367899999999
Q ss_pred EEcC-CCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCC---Ccce
Q 001248 427 IWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN---GAKQ 502 (1114)
Q Consensus 427 ~~sp-dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~---~~~~ 502 (1114)
+||| ....||+|+.||+|+|||++.+...... ....|.+.|+.|.|+.+-. +|++|+.||+++|||+++ ++++
T Consensus 264 qWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~-~~kAh~sDVNVISWnr~~~--lLasG~DdGt~~iwDLR~~~~~~pV 340 (440)
T KOG0302|consen 264 QWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV-STKAHNSDVNVISWNRREP--LLASGGDDGTLSIWDLRQFKSGQPV 340 (440)
T ss_pred ccCCccCceEEeeecCceEEEEEecCCCcccee-EeeccCCceeeEEccCCcc--eeeecCCCceEEEEEhhhccCCCcc
Confidence 9999 4567899999999999999998544333 3478999999999998888 899999999999999974 6788
Q ss_pred eEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEe
Q 001248 503 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 582 (1114)
Q Consensus 503 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~ 582 (1114)
.+|+.|..+|+++.|+|..+ ..+++++.|.+|.+||+....-.-..... ....+.=-|. +.+|.......+.-+.|
T Consensus 341 A~fk~Hk~pItsieW~p~e~-s~iaasg~D~QitiWDlsvE~D~ee~~~~--a~~~L~dlPp-QLLFVHqGQke~KevhW 416 (440)
T KOG0302|consen 341 ATFKYHKAPITSIEWHPHED-SVIAASGEDNQITIWDLSVEADEEEIDQE--AAEGLQDLPP-QLLFVHQGQKEVKEVHW 416 (440)
T ss_pred eeEEeccCCeeEEEeccccC-ceEEeccCCCcEEEEEeeccCChhhhccc--cccchhcCCc-eeEEEecchhHhhhhee
Confidence 89999999999999998876 58888899999999999643221100000 0000000000 02222223345666777
Q ss_pred cCCC-CEEEEEeCCCe
Q 001248 583 DTTK-NRFLAAGDDFS 597 (1114)
Q Consensus 583 ~~~~-~~l~~~~~dg~ 597 (1114)
++.- .++++.+.||-
T Consensus 417 H~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 417 HRQIPGLLVSTAIDGF 432 (440)
T ss_pred ccCCCCeEEEecccce
Confidence 7765 45666666663
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.3e-16 Score=183.06 Aligned_cols=369 Identities=22% Similarity=0.392 Sum_probs=268.1
Q ss_pred eeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCc-ceeEeecccc-CEEEEeeccCCCce-EEEEEec-CCeE
Q 001248 460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFEGHEA-PVYSVCPHHKENIQ-FIFSTAL-DGKI 535 (1114)
Q Consensus 460 ~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~h~~-~v~~~~~~~~~~~~-~l~s~~~-d~~i 535 (1114)
.+..|...+..+.|.+.+. .++.++.|+.+.+|+...+. .+..+.++.. .+..+.+. .+++. +++..+. |+.+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~ 136 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGE--LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTV 136 (466)
T ss_pred eeeeccceEEEEEECCCCc--EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccE
Confidence 3567899999999999999 68888899999999998887 6777776443 77777774 55555 5555444 9999
Q ss_pred EEEEcCC-CCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeC-CCeEEEEECCCcceEEEec
Q 001248 536 KAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD-DFSIKFWDMDSVQLLTSID 613 (1114)
Q Consensus 536 ~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~ 613 (1114)
.+|+... ......+..+...+..+.+++++. .+++++. ++.+++|+...+..+..+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (466)
T COG2319 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGK---------------------LLASGSSLDGTIKLWDLRTGKPLSTLA 195 (466)
T ss_pred EEEEecCCCeEEEEEecCcccEEEEEECCCCC---------------------EEEecCCCCCceEEEEcCCCceEEeec
Confidence 9999987 555566666766666666666664 5777775 9999999999888888887
Q ss_pred cCCCCCCcCeEEEcCCCC-EEEEEeCCCcEEEEEccCCcccee-eccccccccccCCCCCCCCccchhhhhhhhcccccc
Q 001248 614 ADGGLPASPRIRFNKDGC-LLAVSTNDNGIKILATSDGIRLLR-TFENLAYDASRTSENSKPTISPISAAAAAAATSAGL 691 (1114)
Q Consensus 614 ~~~~~~~v~~~~~s~d~~-~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1114)
.| ...+.+++|+|++. ++++++.|+.|++||...+ .... .+.+
T Consensus 196 ~~--~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~-~~~~~~~~~-------------------------------- 240 (466)
T COG2319 196 GH--TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG-KLLRSTLSG-------------------------------- 240 (466)
T ss_pred cC--CCceEEEEEcCCcceEEEEecCCCcEEEEECCCC-cEEeeecCC--------------------------------
Confidence 64 45799999999998 5555589999999966533 1111 0100
Q ss_pred ccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeeccc
Q 001248 692 ADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS 771 (1114)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~ 771 (1114)
T Consensus 241 -------------------------------------------------------------------------------- 240 (466)
T COG2319 241 -------------------------------------------------------------------------------- 240 (466)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCc
Q 001248 772 NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK 850 (1114)
Q Consensus 772 dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~ 850 (1114)
|.... ...|++++.++++++ |+.+++|+.....
T Consensus 241 ---------------------------------------------~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 274 (466)
T COG2319 241 ---------------------------------------------HSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSS 274 (466)
T ss_pred ---------------------------------------------CCcce-eEeECCCCCEEEEecCCCcEEEeeecCCC
Confidence 11111 114555555555454 6666677666444
Q ss_pred c-ccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeec--ccccCeeEEEEcCCCCEEEEE-eCCCcE
Q 001248 851 T-MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK--GHSKRITGLAFSHALNVLVSS-GADSQL 926 (1114)
Q Consensus 851 ~-~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~--~h~~~V~~l~~s~d~~~l~s~-s~D~~v 926 (1114)
. ...+..|...+.++.|+| ++..+++++.|+.+.+||..+........ .|...+..+.|.+++..++.+ ..|+.+
T Consensus 275 ~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 353 (466)
T COG2319 275 SLLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTI 353 (466)
T ss_pred cEEEEEecCCccEEEEEECC-CCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcE
Confidence 3 333355678899999999 77777779999999999998887766665 888889999994333556655 688999
Q ss_pred EEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE--EeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEEC
Q 001248 927 CVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHETQLAIFETTKLECVKQWVPRESSAPITHATFS 1004 (1114)
Q Consensus 927 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~--~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s 1004 (1114)
.+|++.... ........ ..+..+.+++ ...... ..++.+.+|+............. ...+....++
T Consensus 354 ~~~~~~~~~-----~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 421 (466)
T COG2319 354 RLWDLRTGK-----PLKTLEGH----SNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGH--TSRVTSLDFS 421 (466)
T ss_pred EeeecCCCc-----eeEEecCC----ceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCC--CCcEEEEEEC
Confidence 999998854 11111111 1267888888 543443 47889999999988887766521 1789999999
Q ss_pred CCCCEEEEEEcCCeEEEEEcCC
Q 001248 1005 CDSQLVYACFLDATVCVFSAAN 1026 (1114)
Q Consensus 1005 ~dg~~l~s~s~Dg~I~vwd~~~ 1026 (1114)
+++..+++++.++.+++|+..+
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 422 PDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CCCcEEEEecCCCcEEEEeccC
Confidence 9999999999999999999988
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.7e-19 Score=173.85 Aligned_cols=258 Identities=19% Similarity=0.262 Sum_probs=193.7
Q ss_pred CCCCceEEEEcCC---CCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCC-
Q 001248 357 QGSSPMSMDFHPV---QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG- 432 (1114)
Q Consensus 357 h~~~v~~v~~spd---g~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg- 432 (1114)
|...-..++|+-| |.-+||.|+.-|.|+|.|+.+++... .+.+|.+.|+.+.|.|+.
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~-------------------~~~ghG~sINeik~~p~~~ 148 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK-------------------NYRGHGGSINEIKFHPDRP 148 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhcc-------------------ceeccCccchhhhcCCCCC
Confidence 6667778888754 44578888899999999999988766 378999999999999954
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCccee---------
Q 001248 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY--------- 503 (1114)
Q Consensus 433 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~--------- 503 (1114)
++|++++.|.+|++|++++..++....-+.||.+.|.++.|+.+|. +++++|.|.+|++|++...+...
T Consensus 149 qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd--~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~ 226 (385)
T KOG1034|consen 149 QLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGD--RIASCGMDHSLKLWRLNVKEFKNKLELSITYS 226 (385)
T ss_pred cEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCC--eeeccCCcceEEEEecChhHHhhhhhhhcccC
Confidence 7899999999999999999999987777889999999999999999 79999999999999987332100
Q ss_pred -------------------EeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCC-CCCeeeecCCCCeeEEE-EEe
Q 001248 504 -------------------IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSRVDYEAPGRWCTTM-AYS 562 (1114)
Q Consensus 504 -------------------~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~~-~~s 562 (1114)
+-.-|...|-|+.|.. +++++-+-++.|.+|..-. .+............+-+ .|.
T Consensus 227 ~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g----d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~ 302 (385)
T KOG1034|consen 227 PNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG----DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFD 302 (385)
T ss_pred CCCccCcCCccccccccccccccccchHHHHHHHh----hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEec
Confidence 1124677777777643 5899999999999997622 11111111111111100 000
Q ss_pred cCCCeEEeeecccceeE--EEecCCCCEEEEEeCCCeEEEEECCCcce--EEEeccCCCCCCcCeEEEcCCCCEEEEEeC
Q 001248 563 ADGTRTYQGFRKRSLGV--VQFDTTKNRFLAAGDDFSIKFWDMDSVQL--LTSIDADGGLPASPRIRFNKDGCLLAVSTN 638 (1114)
Q Consensus 563 ~~g~~~~~~~~~~~v~~--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 638 (1114)
.....+.. .+|++-+..|+.|...|.|++||++...+ ..++..+.....|...+|+.||.+|+...+
T Consensus 303 ---------~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcd 373 (385)
T KOG1034|consen 303 ---------YPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCD 373 (385)
T ss_pred ---------cCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeC
Confidence 01113333 35567788999999999999999987654 334444444567899999999999999999
Q ss_pred CCcEEEEEcc
Q 001248 639 DNGIKILATS 648 (1114)
Q Consensus 639 dg~i~iwd~~ 648 (1114)
|++|.-||..
T Consensus 374 d~~Vwrwdrv 383 (385)
T KOG1034|consen 374 DGTVWRWDRV 383 (385)
T ss_pred CCcEEEEEee
Confidence 9999999853
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.6e-19 Score=204.27 Aligned_cols=280 Identities=13% Similarity=0.166 Sum_probs=212.4
Q ss_pred ccCcccccccccCCCCcCCCCcCCCCCCCCCcceeEeccCCCCceEEEEcCCCCe---EEEEEecCCcEEEEEcCCccee
Q 001248 318 NLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQT---LLLVGTNVGDIGLWEVGSRERL 394 (1114)
Q Consensus 318 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~spdg~~---ll~tg~~dg~v~iwd~~~~~~~ 394 (1114)
++.+.||.++|..... ..+....+.-...-..++|.+.|.. ++|.|..||.|.+||...-..-
T Consensus 38 ~~slEifeld~~~~~~--------------dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~ 103 (1049)
T KOG0307|consen 38 SASLEIFELDFSDESS--------------DLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIAN 103 (1049)
T ss_pred ccccceeeecccCccc--------------cccccccccccccceeeeecccCCCccceeeccccCCceEEecchhhccC
Confidence 5566777777765431 1122344445677899999998886 6999999999999998752000
Q ss_pred EEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCC-eEEEEeCCCeEEEEEccCCceeeeeEee--ccccCCeeEE
Q 001248 395 VLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS-LFGVAYSRHIVQIYSYHGGDEVRQHLEI--DAHVGGVNDI 471 (1114)
Q Consensus 395 ~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-~las~~~dg~i~iwd~~~~~~~~~~~~l--~~h~~~V~~v 471 (1114)
..... ......|.+.|..+.|++.+. +||+|+.||.|.|||+..-+... +. ..-.+.|.++
T Consensus 104 ------------~~~~~-la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~---~~~~~~~~~eI~~l 167 (1049)
T KOG0307|consen 104 ------------ASEEV-LATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPF---TPGSQAPPSEIKCL 167 (1049)
T ss_pred ------------cchHH-HhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCC---CCCCCCCcccceEe
Confidence 00011 114678999999999999665 99999999999999998744322 22 1245679999
Q ss_pred EecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeecccc--CEEEEeeccCCCceEEEEEecCC--eEEEEEcCCCC-Ce
Q 001248 472 AFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA--PVYSVCPHHKENIQFIFSTALDG--KIKAWLYDNLG-SR 546 (1114)
Q Consensus 472 ~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~-~~ 546 (1114)
+|+..-.+ +|++++.+|.+.|||++..+.+-.+..|.+ .+..++|+++...+++++...|+ .|.+||++... ..
T Consensus 168 sWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~ 246 (1049)
T KOG0307|consen 168 SWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPL 246 (1049)
T ss_pred ccchhhhH-HhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCch
Confidence 99988776 799999999999999999888877766654 46788999987654444444443 69999998654 44
Q ss_pred eeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEE
Q 001248 547 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRF 626 (1114)
Q Consensus 547 ~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 626 (1114)
..+..|...|.++.|++.+. .++++++.|+.|.+||.++++.+..+... ..++..+.|
T Consensus 247 k~~~~H~~GilslsWc~~D~--------------------~lllSsgkD~~ii~wN~~tgEvl~~~p~~--~nW~fdv~w 304 (1049)
T KOG0307|consen 247 KILEGHQRGILSLSWCPQDP--------------------RLLLSSGKDNRIICWNPNTGEVLGELPAQ--GNWCFDVQW 304 (1049)
T ss_pred hhhcccccceeeeccCCCCc--------------------hhhhcccCCCCeeEecCCCceEeeecCCC--Ccceeeeee
Confidence 46677888888888877653 47899999999999999999999999864 348899999
Q ss_pred cCCC-CEEEEEeCCCcEEEEEccCC
Q 001248 627 NKDG-CLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 627 s~d~-~~l~~~~~dg~i~iwd~~~~ 650 (1114)
+|.. ..+++++.||.|.|+.+.+.
T Consensus 305 ~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 305 CPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred cCCCcchhhhheeccceeeeeeecC
Confidence 9954 58889999999999998765
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-16 Score=166.75 Aligned_cols=506 Identities=14% Similarity=0.140 Sum_probs=290.7
Q ss_pred cCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeE
Q 001248 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 435 (1114)
Q Consensus 356 ~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 435 (1114)
.|...|.|+.|+.... ++.++ .|..+.+|.-.+.+.....+. .... ++. ..|-.+- +..=-.....+
T Consensus 12 r~~e~vc~v~w~~~ee-i~~~~-dDh~~~~~~~~~~~s~~~~~~-----p~df--~pt---~~h~~~r-s~~~g~~~d~~ 78 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEE-IYFVS-DDHQIFKWSDVSRDSVEVAKL-----PDDF--VPT---DMHLGGR-SSGGGKGSDTL 78 (737)
T ss_pred ccceeEEeecccccce-EEEec-cCceEEEeecccchhhhhhhC-----Cccc--CCc---ccccccc-ccCCCCCcceE
Confidence 4777788999999888 45554 566666665444332221100 0000 000 0110000 00000133468
Q ss_pred EEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEE
Q 001248 436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 515 (1114)
Q Consensus 436 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 515 (1114)
+.++.||.+.|-+-.. +.-+ .+..|.+.|.+-.|+|||. -|+|++.||.|++|. ++|....++.....+|.|+
T Consensus 79 ~i~s~DGkf~il~k~~-rVE~---sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 79 LICSNDGRFVILNKSA-RVER---SISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCA 151 (737)
T ss_pred EEEcCCceEEEecccc-hhhh---hhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEe-ccchHHHHHhhcCceeEEE
Confidence 8888999988887543 2222 5779999999999999999 799999999999999 8888777777788999999
Q ss_pred eeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCC
Q 001248 516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 595 (1114)
Q Consensus 516 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 595 (1114)
+|.|+.+ +.+++.+ +.+.+=-+.....+.....|.+-|. ++.|++..+.+++|++|
T Consensus 152 ~W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL---------------------~~~W~~~s~lI~sgGED 207 (737)
T KOG1524|consen 152 RWAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVL---------------------SLSWSTQSNIIASGGED 207 (737)
T ss_pred EECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEE---------------------EeecCccccceeecCCc
Confidence 9987765 4565554 3344444444444445555555444 45555556689999999
Q ss_pred CeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCc
Q 001248 596 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTI 675 (1114)
Q Consensus 596 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (1114)
-..++||. .|..+..-..|.. +|++++|.|+ +.++.++. ++.++=
T Consensus 208 ~kfKvWD~-~G~~Lf~S~~~ey--~ITSva~npd-~~~~v~S~-nt~R~~------------------------------ 252 (737)
T KOG1524|consen 208 FRFKIWDA-QGANLFTSAAEEY--AITSVAFNPE-KDYLLWSY-NTARFS------------------------------ 252 (737)
T ss_pred eeEEeecc-cCcccccCChhcc--ceeeeeeccc-cceeeeee-eeeeec------------------------------
Confidence 99999996 5666666655544 7999999999 55665554 233310
Q ss_pred cchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceE
Q 001248 676 SPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKIS 755 (1114)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~ 755 (1114)
....+.|.
T Consensus 253 ------------------------------------------------------------------------~p~~GSif 260 (737)
T KOG1524|consen 253 ------------------------------------------------------------------------SPRVGSIF 260 (737)
T ss_pred ------------------------------------------------------------------------CCCccceE
Confidence 01446789
Q ss_pred EEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEE
Q 001248 756 RLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMS 835 (1114)
Q Consensus 756 ~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~ 835 (1114)
.++||+||..+++++..|.+.+=-.-. ..+ + -+.+=++
T Consensus 261 nlsWS~DGTQ~a~gt~~G~v~~A~~ie----------------------q~l-------------~-------~~n~~~t 298 (737)
T KOG1524|consen 261 NLSWSADGTQATCGTSTGQLIVAYAIE----------------------QQL-------------V-------SGNLKAT 298 (737)
T ss_pred EEEEcCCCceeeccccCceEEEeeeeh----------------------hhh-------------h-------hccceeE
Confidence 999999999999999998876521100 000 0 0111122
Q ss_pred Ee-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCC
Q 001248 836 AS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL 914 (1114)
Q Consensus 836 ~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~ 914 (1114)
.. ...|.+-|+.++.+ ..+. .+..|...+..- +.+++ +. ...|++|.-.....-..+.+....+.-+.-.. .
T Consensus 299 ~~~r~~I~vrdV~~~v~-d~LE-~p~rv~k~sL~Y--~hLvv-aT-s~qvyiys~knwntpiiidgre~tr~lieq~e-k 371 (737)
T KOG1524|consen 299 SKSRKSITVRDVATGVQ-DILE-FPQRVVKFSLGY--GHLVV-AT-SLQVYIYSEKNWNTPIIIDGREDTRNLIEQGE-K 371 (737)
T ss_pred eeccceEEeehhhhhHH-HHhh-Cccceeeeeece--eEEEE-Ee-ccEEEEEecCCccCcEEEeccccchhHhhhhh-h
Confidence 22 45577777766544 2232 345566666553 33333 33 24688887554433334444444332222111 1
Q ss_pred CEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE---EeCCeEEEEEc-CCCceeeeee
Q 001248 915 NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV---VHETQLAIFET-TKLECVKQWV 990 (1114)
Q Consensus 915 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~---~~d~~i~iwd~-~~~~~~~~~~ 990 (1114)
.+++ ....++.+|..+....... .+++... .....-..|-....|+. ++...+.+||. .+|+....-.
T Consensus 372 ~fli--~dgsSi~lytyegR~~~np----~~Pg~~~--dlL~~rtlsLandtLaird~ad~kvlhlFd~istgk~qgDgk 443 (737)
T KOG1524|consen 372 YFLI--LDGSSIWLYTYEGRLHLNP----RYPGSQI--DLLTWRTLSLANDTLAIRDNADPKVLHLFDLISTGKRQGDGK 443 (737)
T ss_pred heEE--ecCcEEEEEEecCceecCC----CCCCccc--ccccceeeecccceEEeecCCCCeeEEeccCCCCCcccCCcc
Confidence 1222 2233466666554221110 0111110 11222233333445555 23456788998 6776644322
Q ss_pred cCCCCcCeeEEEEC----CCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEE
Q 001248 991 PRESSAPITHATFS----CDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG 1066 (1114)
Q Consensus 991 ~~~h~~~v~~l~~s----~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~ 1066 (1114)
.-.|...|..++.. ++.+.++.-...+.++|=.+.+.-...++- .-| .-|. .++|+. -.-+.+|
T Consensus 444 ~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~-----KiG---TmVh--tLawnd--ttNiLcg 511 (737)
T KOG1524|consen 444 SLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIY-----KIG---TMVH--TLAWND--TTNILCG 511 (737)
T ss_pred ccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhhh-----hhh---hhhh--hhhhcc--ccceeee
Confidence 12355666666664 455677777777777776654332111110 111 1133 788874 4557789
Q ss_pred eCCCcEEEEeccCCC
Q 001248 1067 LSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1067 ~~Dg~v~vW~i~~~~ 1081 (1114)
-.|+++.||-.++.-
T Consensus 512 lqDt~fsVWy~pn~v 526 (737)
T KOG1524|consen 512 LQDTCFSVWYYPNEV 526 (737)
T ss_pred eccceEEEEEcCCcc
Confidence 999999999987744
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.6e-17 Score=161.20 Aligned_cols=227 Identities=13% Similarity=0.144 Sum_probs=169.8
Q ss_pred cCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCC---ccEEEEeeCCCEEEEEe
Q 001248 761 NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEA---VPCFALSKNDSYVMSAS 837 (1114)
Q Consensus 761 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~---v~~v~~s~d~~~l~~~~ 837 (1114)
|+..++++.+.+.-|.+||.- +|++... +....|... ..+++|+|||.+|.+|.
T Consensus 121 P~t~l~a~ssr~~PIh~wdaf----------------------tG~lraS-y~~ydh~de~taAhsL~Fs~DGeqlfaGy 177 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAF----------------------TGKLRAS-YRAYDHQDEYTAAHSLQFSPDGEQLFAGY 177 (406)
T ss_pred CccceeeeccccCceeeeecc----------------------ccccccc-hhhhhhHHhhhhheeEEecCCCCeEeecc
Confidence 667778888888888877654 3333221 111123333 44799999999999999
Q ss_pred CCeEEEEEcC-CCcccc---cc----CCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEE
Q 001248 838 GGKISLFNMM-TFKTMA---TF----MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLA 909 (1114)
Q Consensus 838 dg~i~iwd~~-~~~~~~---~~----~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~ 909 (1114)
..+|++||+. .|.... ++ .+..+-|.+++|+|.+...+|+|+-...+-||.-..+.++..+-+|.+.|+.+.
T Consensus 178 krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~ 257 (406)
T KOG2919|consen 178 KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQ 257 (406)
T ss_pred cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEE
Confidence 9999999994 333221 11 223567899999998888999999999999999888999999999999999999
Q ss_pred EcCCCCEEEEEeC-CCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCeEEEEEcCC-Ccee
Q 001248 910 FSHALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK-LECV 986 (1114)
Q Consensus 910 ~s~d~~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~i~iwd~~~-~~~~ 986 (1114)
|.+||+.|.+|++ |..|..||+..... ++-.+..|......-.-....|+|++|+++ .||.|++||+++ +..+
T Consensus 258 ~~edGn~lfsGaRk~dkIl~WDiR~~~~----pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~ 333 (406)
T KOG2919|consen 258 WCEDGNKLFSGARKDDKILCWDIRYSRD----PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEV 333 (406)
T ss_pred eccCcCeecccccCCCeEEEEeehhccc----hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcc
Confidence 9999999999985 67899999987443 233333333211122234456899999996 999999999998 6655
Q ss_pred eeeecCCCCcCeeEEEECCCCCEEEEEEcC
Q 001248 987 KQWVPRESSAPITHATFSCDSQLVYACFLD 1016 (1114)
Q Consensus 987 ~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D 1016 (1114)
..+. .|+..+..+++.|--.++|+++..
T Consensus 334 sv~~--~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 334 SVTG--NYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred cccc--cccccccceecCcccceeeeccCc
Confidence 5544 678999999999997778877644
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-17 Score=166.99 Aligned_cols=302 Identities=16% Similarity=0.183 Sum_probs=214.8
Q ss_pred ccceEEEEEccCcc-eeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeC
Q 001248 751 ATKISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1114)
Q Consensus 751 ~~~i~~l~~s~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d 829 (1114)
..++..+.|.+++. .+++++.|..|++|.+....-...+..+. ....+. .|...|+++.|+|+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~--------------y~s~Ls--~H~~aVN~vRf~p~ 76 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVE--------------YLSSLS--RHTRAVNVVRFSPD 76 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEE--------------Eeeccc--CCcceeEEEEEcCC
Confidence 45788899988877 89999999999999987543321110000 001122 39999999999999
Q ss_pred CCEEEEEe-CCeEEEEEcC--------C--------CccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc
Q 001248 830 DSYVMSAS-GGKISLFNMM--------T--------FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 892 (1114)
Q Consensus 830 ~~~l~~~~-dg~i~iwd~~--------~--------~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~ 892 (1114)
|..||+|+ +|.|.+|-.. + ....+.+.+|...|..++|+| ++.++++|+-|..+++||+..|
T Consensus 77 gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G 155 (434)
T KOG1009|consen 77 GELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAG 155 (434)
T ss_pred cCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccc
Confidence 99999999 6899999765 2 223345678999999999999 9999999999999999999999
Q ss_pred eEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccc---cccCCCCC------------CCCCCceE
Q 001248 893 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRF---LQIPTGRT------------PTAQSDTR 957 (1114)
Q Consensus 893 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~---~~~~~~~~------------~~~~~i~~ 957 (1114)
.+...+.+|...|..++|.|-++++++-+.|...+++.+.........- +....++. ....--..
T Consensus 156 ~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrR 235 (434)
T KOG1009|consen 156 QLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRR 235 (434)
T ss_pred eeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhh
Confidence 9999999999999999999999999999999977777765533222111 00000000 00112367
Q ss_pred EEEccCCcEEEE-E----eCCe-----EEEEEcCCCceeeeeecCCCCcCeeEEEECC------------------CCCE
Q 001248 958 VQFHQDQIHFLV-V----HETQ-----LAIFETTKLECVKQWVPRESSAPITHATFSC------------------DSQL 1009 (1114)
Q Consensus 958 v~fspdg~~l~~-~----~d~~-----i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~------------------dg~~ 1009 (1114)
++|+|||.+|++ + ..+. .++|+-...+.... ....-..+...+.|+| -+-.
T Consensus 236 lsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~-~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlv 314 (434)
T KOG1009|consen 236 LSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAA-RLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLV 314 (434)
T ss_pred cccCCCCcEEEcccceeeeCCceeeceeEeeccccccCcee-ecCCCCcceEEEEeeeeEEEeccccccccccccccceE
Confidence 899999999998 2 2233 34555443322111 1122344555555554 2223
Q ss_pred EEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1010 VYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1010 l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
+|.+ .-..|+|||.++.+.++.+...+|.+ +. .++|++ ||..|+..|.||-.-+-.+...|
T Consensus 315 faiA-t~~svyvydtq~~~P~~~v~nihy~~-------iT--Diaws~-dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 315 FAIA-TKNSVYVYDTQTLEPLAVVDNIHYSA-------IT--DIAWSD-DGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred EEEe-ecceEEEeccccccceEEEeeeeeee-------ec--ceeecC-CCcEEEEeccCCceEEEEEcchh
Confidence 4444 46689999999999998887555554 33 899998 79999999999988887777766
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.7e-17 Score=160.09 Aligned_cols=274 Identities=16% Similarity=0.272 Sum_probs=189.6
Q ss_pred eeEEEecCCCCeeEEEEecCCCCEEEEeCCCC-------cc-----eeEeec-cccCEEEEeec-----cCCCceEEEEE
Q 001248 468 VNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-------AK-----QYIFEG-HEAPVYSVCPH-----HKENIQFIFST 529 (1114)
Q Consensus 468 V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~-------~~-----~~~~~~-h~~~v~~~~~~-----~~~~~~~l~s~ 529 (1114)
...+.|||||. .|++-+.|..+.+|++... .. ..+++- ....|...+|. ..|+..++++.
T Consensus 52 ~kgckWSPDGS--ciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 52 LKGCKWSPDGS--CILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hccceeCCCCc--eEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence 45689999999 7899999999999997521 11 111111 23456666664 23556789999
Q ss_pred ecCCeEEEEEcCCCCCeeeecCCCC-----eeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEEC-
Q 001248 530 ALDGKIKAWLYDNLGSRVDYEAPGR-----WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM- 603 (1114)
Q Consensus 530 ~~d~~i~~wd~~~~~~~~~~~~~~~-----~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~- 603 (1114)
+.+.-|++||.-+++....+..-.. ...+++|+|||. +|++ +....|++||+
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe---------------------qlfa-GykrcirvFdt~ 187 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE---------------------QLFA-GYKRCIRVFDTS 187 (406)
T ss_pred cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC---------------------eEee-cccceEEEeecc
Confidence 9999999999999887776654321 234555555555 5554 45689999998
Q ss_pred CCcceEEEec-----cCCCCCCcCeEEEcC-CCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccc
Q 001248 604 DSVQLLTSID-----ADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISP 677 (1114)
Q Consensus 604 ~~~~~~~~~~-----~~~~~~~v~~~~~s~-d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (1114)
+.|+...... ..+..+.+.+++|+| +.+.+++|+....+-|+.-... ..+..+
T Consensus 188 RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~-~pl~ll-------------------- 246 (406)
T KOG2919|consen 188 RPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-RPLQLL-------------------- 246 (406)
T ss_pred CCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC-Cceeee--------------------
Confidence 5554322221 122345678899999 5668888888777777754333 111100
Q ss_pred hhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEE
Q 001248 678 ISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRL 757 (1114)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l 757 (1114)
T Consensus 247 -------------------------------------------------------------------------------- 246 (406)
T KOG2919|consen 247 -------------------------------------------------------------------------------- 246 (406)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe
Q 001248 758 IFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS 837 (1114)
Q Consensus 758 ~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~ 837 (1114)
.+|.+.|+.+.|.+||+.|.+|.
T Consensus 247 ---------------------------------------------------------ggh~gGvThL~~~edGn~lfsGa 269 (406)
T KOG2919|consen 247 ---------------------------------------------------------GGHGGGVTHLQWCEDGNKLFSGA 269 (406)
T ss_pred ---------------------------------------------------------cccCCCeeeEEeccCcCeecccc
Confidence 02666677777777777777776
Q ss_pred --CCeEEEEEcCC-CccccccCCCCC-CeEEEE--EecCCCcEEEEEeCCCcEEEEEccc-ceEEEeecccccCeeEEEE
Q 001248 838 --GGKISLFNMMT-FKTMATFMPPPP-AATFLA--FHPQDNNIIAIGMDDSSIQIYNVRV-DEVKSKLKGHSKRITGLAF 910 (1114)
Q Consensus 838 --dg~i~iwd~~~-~~~~~~~~~~~~-~i~~l~--~sp~d~~~la~g~~dg~v~iwd~~~-~~~~~~l~~h~~~V~~l~~ 910 (1114)
+..|..||++. ...+..+..|.. .=..+- ..| ++++||+|+.||.|++||+.+ +..+..+..|+..|+.+++
T Consensus 270 Rk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~-~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvsl 348 (406)
T KOG2919|consen 270 RKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDP-KGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSL 348 (406)
T ss_pred cCCCeEEEEeehhccchhhhhhhhccCccceEEEecCC-CCceeeccCCCccEEEEecCCCCCcccccccccccccceec
Confidence 67788888863 455566665544 223344 457 799999999999999999998 7778888889999999999
Q ss_pred cCCCCEEEEEeCCC
Q 001248 911 SHALNVLVSSGADS 924 (1114)
Q Consensus 911 s~d~~~l~s~s~D~ 924 (1114)
+|--.++|+++...
T Consensus 349 nP~mpilatssGqr 362 (406)
T KOG2919|consen 349 NPIMPILATSSGQR 362 (406)
T ss_pred CcccceeeeccCce
Confidence 99988888887643
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-17 Score=159.10 Aligned_cols=308 Identities=13% Similarity=0.188 Sum_probs=197.1
Q ss_pred cceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeec-CCCCeeEEEEEecCCCeEEeeeccccee
Q 001248 500 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-APGRWCTTMAYSADGTRTYQGFRKRSLG 578 (1114)
Q Consensus 500 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~g~~~~~~~~~~~v~ 578 (1114)
.+...+++|.+.|+++.|..+ .+|++|..-|.+++|++.+......+. .+...|+.+...|++.
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~---~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~------------ 69 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQAN---ERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDS------------ 69 (323)
T ss_pred CCeeEeccccchheehhhccc---hhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcc------------
Confidence 345677799999999997543 479999999999999999988877777 4556777777777655
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCC-cEEEEEccCCccceeec
Q 001248 579 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN-GIKILATSDGIRLLRTF 657 (1114)
Q Consensus 579 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg-~i~iwd~~~~~~~~~~~ 657 (1114)
+.+-+.|+.+.+|++..+..+..-.. .++++.|.+-. +...+... ..-.++-+...+ ....
T Consensus 70 ----------l~tqgRd~~L~lw~ia~s~~i~i~Si-----~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde-~h~~ 131 (323)
T KOG0322|consen 70 ----------LDTQGRDPLLILWTIAYSAFISIHSI-----VVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDE-THKQ 131 (323)
T ss_pred ----------hhhcCCCceEEEEEccCcceEEEeee-----eccccccccce--eccCCCcchhheecCCcccch-hhhh
Confidence 88889999999999987665443321 23444444311 11111100 011111111100 0000
Q ss_pred cccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCC
Q 001248 658 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP 737 (1114)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~ 737 (1114)
.+ +..-.+++-+-.
T Consensus 132 D~-------------------------------------------------------------g~~tqv~i~dd~----- 145 (323)
T KOG0322|consen 132 DG-------------------------------------------------------------GDTTQVQIADDS----- 145 (323)
T ss_pred cc-------------------------------------------------------------CccceeEccCch-----
Confidence 00 000011111100
Q ss_pred ccccccccCccccccceEEEEEc-cCcc--eeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCC
Q 001248 738 NQCRSLRLPENLRATKISRLIFT-NSGN--AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 814 (1114)
Q Consensus 738 ~~~~~~~~~~~~~~~~i~~l~~s-~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~ 814 (1114)
..+..+.+.+..+. .++. .++++.++|.+.+||++.+....+-. ..|.. . ...
T Consensus 146 ---------~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~-------~~~kv------~--~~~ 201 (323)
T KOG0322|consen 146 ---------ERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLP-------QSSKV------E--SPN 201 (323)
T ss_pred ---------hccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccc-------ccccc------c--cch
Confidence 01123333333321 1222 35677888999999988652211111 11111 1 111
Q ss_pred CCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCC--Ccc--ccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEc
Q 001248 815 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT--FKT--MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV 889 (1114)
Q Consensus 815 ~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~--~~~--~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~ 889 (1114)
..|..+|.++.+.+.-..=++|+ +..+..|++.. +.+ ..+.......|..+..-| |++++|+++.|+.||||+.
T Consensus 202 ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVysw 280 (323)
T KOG0322|consen 202 ASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSW 280 (323)
T ss_pred hhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEe
Confidence 23889999999987655555666 67788888763 222 122233345688899999 9999999999999999999
Q ss_pred ccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001248 890 RVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 931 (1114)
Q Consensus 890 ~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~ 931 (1114)
++...+..++.|++.|++++|+||...+|.+|.|++|-+|++
T Consensus 281 rtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 281 RTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999999999999999999999986
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3e-16 Score=170.59 Aligned_cols=505 Identities=14% Similarity=0.158 Sum_probs=292.9
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCC-----
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD----- 431 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd----- 431 (1114)
|...-.++.|+|.| |+|.|+ ...|.|-|..+-+.+. .+..|...|+.+.|+|-
T Consensus 14 ~~sN~~A~Dw~~~G--LiAygs-hslV~VVDs~s~q~iq-------------------sie~h~s~V~~VrWap~~~p~~ 71 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG--LIAYGS-HSLVSVVDSRSLQLIQ-------------------SIELHQSAVTSVRWAPAPSPRD 71 (1062)
T ss_pred CcccccccccCccc--eEEEec-CceEEEEehhhhhhhh-------------------ccccCccceeEEEeccCCCchh
Confidence 44446889999999 688876 4578888877766655 36778899999999872
Q ss_pred -C------CeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecC---CCCeeEEEEecCCCCEEEEeCCCCcc
Q 001248 432 -G------SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH---PNKQLCVITCGDDKTIKVWDATNGAK 501 (1114)
Q Consensus 432 -g------~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~---d~~~~~l~s~~~d~~i~iwd~~~~~~ 501 (1114)
+ -+||++...|.|.+||...+..+. .+..|..+|..+.|-+ +.+. +|+.-....++.+|+..+|+.
T Consensus 72 llS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k 147 (1062)
T KOG1912|consen 72 LLSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEK 147 (1062)
T ss_pred ccCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCce
Confidence 1 257778888999999999877554 6888999999999865 3434 455555667999999999999
Q ss_pred eeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCC-------eEEee---
Q 001248 502 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT-------RTYQG--- 571 (1114)
Q Consensus 502 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~-------~~~~~--- 571 (1114)
............++.+.|-.. ..+..-+..|.+.+-+.-..... ......+.+..+.. ....+
T Consensus 148 ~Wk~~ys~~iLs~f~~DPfd~-rh~~~l~s~g~vl~~~~l~~sep------~~pgk~~qI~sd~Sdl~~lere~at~ns~ 220 (1062)
T KOG1912|consen 148 FWKYDYSHEILSCFRVDPFDS-RHFCVLGSKGFVLSCKDLGLSEP------DVPGKEFQITSDHSDLAHLERETATGNST 220 (1062)
T ss_pred eeccccCCcceeeeeeCCCCc-ceEEEEccCceEEEEeccCCCCC------CCCceeEEEecCccchhhhhhhhhccccc
Confidence 888776666666677665444 34444455666665544321111 00111111111100 00000
Q ss_pred -ecccc------eeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCC--CEEEEEeCCCcE
Q 001248 572 -FRKRS------LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG--CLLAVSTNDNGI 642 (1114)
Q Consensus 572 -~~~~~------v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~--~~l~~~~~dg~i 642 (1114)
..... ...++|+|.-+.++-......+.++|++...++.......+ .+.-+.+-|++ ..|++.-.||.+
T Consensus 221 ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~--~akfv~vlP~~~rd~LfclH~nG~l 298 (1062)
T KOG1912|consen 221 TSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERG--GAKFVDVLPDPRRDALFCLHSNGRL 298 (1062)
T ss_pred cCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccC--CcceeEeccCCCcceEEEEecCCeE
Confidence 00000 11246677665566666678899999999888888876654 34556676654 578999999999
Q ss_pred EEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccC
Q 001248 643 KILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEES 722 (1114)
Q Consensus 643 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 722 (1114)
.+|-.+......+.-..+ + +.+.
T Consensus 299 tirvrk~~~~~f~~~~~~--------------l-------------------------------------------~~dl 321 (1062)
T KOG1912|consen 299 TIRVRKEEPTEFKKPNAS--------------L-------------------------------------------SMDL 321 (1062)
T ss_pred EEEEeeccCccccccchh--------------h-------------------------------------------cccc
Confidence 999754431111111000 0 0000
Q ss_pred CCceeEEEeccCCCCccccccccCccccccceEEEEEccC-cceeeecccCceEEEEeecccccCCCCCccccccccccC
Q 001248 723 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ 801 (1114)
Q Consensus 723 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~ 801 (1114)
...+.+-... .+..+......|. ...++..-.+|...+|.+.++....+.......-..-++
T Consensus 322 ~~Q~~~vr~m-----------------~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~ 384 (1062)
T KOG1912|consen 322 GEQVHVVRPM-----------------EEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFD 384 (1062)
T ss_pred ccceEEEeec-----------------hhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccccccccccc
Confidence 0001000000 1112222233333 344555556677777777654443333221110000000
Q ss_pred CCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCC-------cE
Q 001248 802 PPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDN-------NI 874 (1114)
Q Consensus 802 ~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~-------~~ 874 (1114)
....... -....-+.+|.| | ...+|........ ....+-..-.| .+ .+
T Consensus 385 f~~~~~~---------v~k~~l~~LS~d---------g-----~h~sGs~~~~~~p-~p~~t~~~~~p-~~n~~~~~~pL 439 (1062)
T KOG1912|consen 385 FNLSTKL---------VGKTSLISLSDD---------G-----SHSSGSTCVRMRP-MPELTKVENDP-GGNTPAGTVPL 439 (1062)
T ss_pred ccCceee---------hhhccccchhhc---------C-----CCCCCceeeeccc-CcccceeecCC-CCCccceeeee
Confidence 0000000 000000111112 2 0111111111110 00000011111 11 28
Q ss_pred EEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeC----------CCcEEEEeCCCCcccccccccc
Q 001248 875 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA----------DSQLCVWSSDGWEKQKNRFLQI 944 (1114)
Q Consensus 875 la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~----------D~~v~iwd~~~~~~~~~~~~~~ 944 (1114)
+|.|...|+|.++|+.++.....+..|.+.|.++.|-... .|+|.+. -+.+.|-|+.+|-....+-++.
T Consensus 440 vAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~s-slvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~ 518 (1062)
T KOG1912|consen 440 VAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNS-SLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQK 518 (1062)
T ss_pred EEeecCCceEEEEEecchhhhhhhcccccceeeeeeccce-eEEEeeeccccccccceeeeEEEEEcccccccccccCCC
Confidence 8999999999999999999999999999999999997543 3444332 3457788888876544333332
Q ss_pred CCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCCCceeeeeecCCCCcC-eeEEEEC
Q 001248 945 PTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAP-ITHATFS 1004 (1114)
Q Consensus 945 ~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~-v~~l~~s 1004 (1114)
. ...+|+.+..|.-|+||++ -.+.-+.+||+++..+++.... .-+ |+.+.|+
T Consensus 519 ~-----despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~---a~P~it~leWs 572 (1062)
T KOG1912|consen 519 P-----DESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSL---ALPLITVLEWS 572 (1062)
T ss_pred C-----CcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhh---cCCcEEEEeec
Confidence 2 2368999999999999999 5888999999998887665432 234 8888887
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.6e-17 Score=159.63 Aligned_cols=405 Identities=15% Similarity=0.159 Sum_probs=238.7
Q ss_pred EEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEE-eCC
Q 001248 363 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA-YSR 441 (1114)
Q Consensus 363 ~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~~d 441 (1114)
-.+|||+|+| +|+.+. ..+.|-|.++-+..+ ++. --+.|..+.|+.|.-+++++ ..|
T Consensus 13 ~c~fSp~g~y-iAs~~~-yrlviRd~~tlq~~q-------------------lf~-cldki~yieW~ads~~ilC~~yk~ 70 (447)
T KOG4497|consen 13 FCSFSPCGNY-IASLSR-YRLVIRDSETLQLHQ-------------------LFL-CLDKIVYIEWKADSCHILCVAYKD 70 (447)
T ss_pred ceeECCCCCe-eeeeee-eEEEEeccchhhHHH-------------------HHH-HHHHhhheeeeccceeeeeeeecc
Confidence 4679999997 887664 488888887754432 111 12478889999998887665 778
Q ss_pred CeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCC
Q 001248 442 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE 521 (1114)
Q Consensus 442 g~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 521 (1114)
+.|.+|++...+-.. .+.....++.++.|||||+. +|.+...|-.|.||.+.+.+... +..-...+..++|+ +
T Consensus 71 ~~vqvwsl~Qpew~c---kIdeg~agls~~~WSPdgrh-iL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~--~ 143 (447)
T KOG4497|consen 71 PKVQVWSLVQPEWYC---KIDEGQAGLSSISWSPDGRH-ILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFH--P 143 (447)
T ss_pred ceEEEEEeecceeEE---EeccCCCcceeeeECCCcce-EeeeecceeEEEEEEeccceeEE-ecccccCceeEEEC--C
Confidence 899999998766444 56677789999999999987 68888899999999998876543 33233455677765 4
Q ss_pred CceEEEEEecCCeEEEEEcCCC---CCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeE
Q 001248 522 NIQFIFSTALDGKIKAWLYDNL---GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSI 598 (1114)
Q Consensus 522 ~~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 598 (1114)
||++.+..+.-.......+... ..+..+....-..+.+.|+||| +.++
T Consensus 144 dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg---------------------~~la-------- 194 (447)
T KOG4497|consen 144 DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDG---------------------NWLA-------- 194 (447)
T ss_pred CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCC---------------------cEEE--------
Confidence 5677777664322111111100 0111222223334455555555 4444
Q ss_pred EEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccch
Q 001248 599 KFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPI 678 (1114)
Q Consensus 599 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (1114)
+||---.-.+..+... -.+..++|+|.+++|++|+.|+.+|+.+--+-+ .+..+- |...+
T Consensus 195 -Vwd~~Leykv~aYe~~---lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk-~f~efl-hl~s~-------------- 254 (447)
T KOG4497|consen 195 -VWDNVLEYKVYAYERG---LGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWK-PFGEFL-HLCSY-------------- 254 (447)
T ss_pred -Eecchhhheeeeeeec---cceeEEEeccccceEEeeccchhhhhhceeeee-ehhhhc-cchhc--------------
Confidence 5553222222222211 247889999999999999999999987654441 111110 00000
Q ss_pred hhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCc-eeEEEeccCCCCccccccccCccccccceEEE
Q 001248 679 SAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDK-SKVWKLTELSEPNQCRSLRLPENLRATKISRL 757 (1114)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l 757 (1114)
.|-+ +.++. +. .. .-.-...++
T Consensus 255 -------------------------------------------~dp~~~~~~k-e~------~~-------~~ql~~~cL 277 (447)
T KOG4497|consen 255 -------------------------------------------HDPTLHLLEK-ET------FS-------IVQLLHHCL 277 (447)
T ss_pred -------------------------------------------cCchhhhhhh-hh------cc-------hhhhccccc
Confidence 0000 00000 00 00 000112334
Q ss_pred EEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe
Q 001248 758 IFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS 837 (1114)
Q Consensus 758 ~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~ 837 (1114)
.|.|..- ...+|........ ......+++.-.+.+. .. +..-.+.-++||+|..++++-.
T Consensus 278 sf~p~~~---------~a~~~~~se~~YE---~~~~pv~~~~lkp~tD------~p--nPk~g~g~lafs~Ds~y~aTrn 337 (447)
T KOG4497|consen 278 SFTPTDL---------EAHIWEESETIYE---QQMTPVKVHKLKPPTD------FP--NPKCGAGKLAFSCDSTYAATRN 337 (447)
T ss_pred ccCCCcc---------ccCccccchhhhh---hhhcceeeecccCCCC------CC--CcccccceeeecCCceEEeeec
Confidence 4444321 0011111100000 0000000000000000 11 1344577799999999999988
Q ss_pred C---CeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCC
Q 001248 838 G---GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL 914 (1114)
Q Consensus 838 d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~ 914 (1114)
| +.+.+||++..+....+. ...+|.+..|+| ....|+.+.....+++|.......+.. .+..-.|..+.|..+|
T Consensus 338 d~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP-~~prL~vctg~srLY~W~psg~~~V~v-P~~GF~i~~l~W~~~g 414 (447)
T KOG4497|consen 338 DKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP-GRPRLVVCTGKSRLYFWAPSGPRVVGV-PKKGFNIQKLQWLQPG 414 (447)
T ss_pred CCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-CCceEEEEcCCceEEEEcCCCceEEec-CCCCceeeeEEecCCC
Confidence 6 669999998866655543 567899999999 666777777677899999776444433 2333679999999999
Q ss_pred CEEEEEeCCCc
Q 001248 915 NVLVSSGADSQ 925 (1114)
Q Consensus 915 ~~l~s~s~D~~ 925 (1114)
..++-.+.|..
T Consensus 415 ~~i~l~~kDaf 425 (447)
T KOG4497|consen 415 EFIVLCGKDAF 425 (447)
T ss_pred cEEEEEcCCce
Confidence 99999999974
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.5e-17 Score=170.11 Aligned_cols=168 Identities=20% Similarity=0.266 Sum_probs=130.5
Q ss_pred EeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEe-eccccCEEEEeeccCCCceEEEEEecCCeEEE
Q 001248 459 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 537 (1114)
Q Consensus 459 ~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~ 537 (1114)
.+|.||.+.|+|++|+.||. +|++|+.|-.+.|||.-..++++.+ .||...|.++.|.|..+..++++|..|..|++
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~--lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGE--LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhccccceecceeecCCCC--EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 36889999999999999999 8999999999999999988888776 68999999999999988899999999999999
Q ss_pred EEcCCCCC----------eeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcc
Q 001248 538 WLYDNLGS----------RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 607 (1114)
Q Consensus 538 wd~~~~~~----------~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 607 (1114)
+|+...+. ...+..|...|..++..|++. +.+.++++||+|+-+|++...
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P--------------------htfwsasEDGtirQyDiREph 181 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP--------------------HTFWSASEDGTIRQYDIREPH 181 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCC--------------------ceEEEecCCcceeeecccCCc
Confidence 99985322 122233344444444444443 568899999999999998732
Q ss_pred eEE-E-------eccCCCCCCcCeEEEcC-CCCEEEEEeCCCcEEEEEcc
Q 001248 608 LLT-S-------IDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATS 648 (1114)
Q Consensus 608 ~~~-~-------~~~~~~~~~v~~~~~s~-d~~~l~~~~~dg~i~iwd~~ 648 (1114)
.-. . .......-...|+.++| +..+|++|+.|-..++||.+
T Consensus 182 ~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 182 VCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred cCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 110 0 01111223457899999 56789999999999999964
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.8e-17 Score=162.54 Aligned_cols=217 Identities=15% Similarity=0.283 Sum_probs=167.3
Q ss_pred ccccCCCCCeeEEEEcC-CCCeEEEEeCCCeEEEEEccCCce----eeeeEeeccccCCeeEEEecCCCCeeEEEEecCC
Q 001248 414 ALVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD 488 (1114)
Q Consensus 414 ~~~~~h~~~V~~l~~sp-dg~~las~~~dg~i~iwd~~~~~~----~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d 488 (1114)
.++.||+++|..++|+| +...||+|+.|.+|.||.+..+.. ......|.||...|.-|+|.|...+ +|+|++.|
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~D 153 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSD 153 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCC
Confidence 35889999999999999 778899999999999999975533 2345578999999999999999887 79999999
Q ss_pred CCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCC-eeEEEEEecCCCe
Q 001248 489 KTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR-WCTTMAYSADGTR 567 (1114)
Q Consensus 489 ~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~-~v~~~~~s~~g~~ 567 (1114)
.+|.+||+.+|+.+-++. |..-|.+++|+. ||.++++.+.|+.|++||.++++.+..-..|.+ .-....|..+|.
T Consensus 154 n~v~iWnv~tgeali~l~-hpd~i~S~sfn~--dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~- 229 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLD-HPDMVYSMSFNR--DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK- 229 (472)
T ss_pred ceEEEEeccCCceeeecC-CCCeEEEEEecc--CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-
Confidence 999999999999999988 999999999754 668999999999999999998877766545433 233344444443
Q ss_pred EEeeecccceeEEEecCCCCEEEEEe----CCCeEEEEECCCcc---eEEEeccCCCCCCcCeEEEcCCCCEEEE-EeCC
Q 001248 568 TYQGFRKRSLGVVQFDTTKNRFLAAG----DDFSIKFWDMDSVQ---LLTSIDADGGLPASPRIRFNKDGCLLAV-STND 639 (1114)
Q Consensus 568 ~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~~d 639 (1114)
+++.+ .+..+-+||...-+ ....+... ..|.---|.+|.++++. |-.|
T Consensus 230 ---------------------i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS---nGvl~PFyD~dt~ivYl~GKGD 285 (472)
T KOG0303|consen 230 ---------------------IFTTGFSRMSERQIALWDPNNLEEPIALQELDTS---NGVLLPFYDPDTSIVYLCGKGD 285 (472)
T ss_pred ---------------------eeeeccccccccceeccCcccccCcceeEEeccC---CceEEeeecCCCCEEEEEecCC
Confidence 33333 57889999866533 23333322 34555667788877765 5569
Q ss_pred CcEEEEEccCCccceeeccc
Q 001248 640 NGIKILATSDGIRLLRTFEN 659 (1114)
Q Consensus 640 g~i~iwd~~~~~~~~~~~~~ 659 (1114)
+.||.|.+.+....+..+..
T Consensus 286 ~~IRYyEit~d~P~~hyln~ 305 (472)
T KOG0303|consen 286 SSIRYFEITNEPPFVHYLNT 305 (472)
T ss_pred cceEEEEecCCCceeEEecc
Confidence 99999999887555555543
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-15 Score=141.92 Aligned_cols=289 Identities=11% Similarity=0.110 Sum_probs=194.5
Q ss_pred ceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCE
Q 001248 753 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 832 (1114)
Q Consensus 753 ~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~ 832 (1114)
.|.+-+++|.+++++++..+|.|.+..+..-..... ...|+...... ..|+.+++.++|. ..+
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa-------------~~~gk~~iv~e--qahdgpiy~~~f~--d~~ 74 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA-------------EPPGKLKIVPE--QAHDGPIYYLAFH--DDF 74 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc-------------CCCCCcceeec--cccCCCeeeeeee--hhh
Confidence 445567899999999999999999998864211100 11222222112 3499999999997 558
Q ss_pred EEEEeCCeEEEEEcCCCcc------cccc--C-----CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeec
Q 001248 833 VMSASGGKISLFNMMTFKT------MATF--M-----PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK 899 (1114)
Q Consensus 833 l~~~~dg~i~iwd~~~~~~------~~~~--~-----~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~ 899 (1114)
|++++||.|+=|....... +... + ..-.+|.++-..|..+.+|. ++.|+.++-||+++|+..++++
T Consensus 75 Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~-AgGD~~~y~~dlE~G~i~r~~r 153 (325)
T KOG0649|consen 75 LLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILF-AGGDGVIYQVDLEDGRIQREYR 153 (325)
T ss_pred eeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEE-ecCCeEEEEEEecCCEEEEEEc
Confidence 8888899999887653221 1111 1 12346899999995555555 4479999999999999999999
Q ss_pred ccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccc-cCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEE
Q 001248 900 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQ-IPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIF 978 (1114)
Q Consensus 900 ~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iw 978 (1114)
||++.|-+++--.....+.||++||+++|||..+.+.....-.. ....-.+. ..-.-.+..-+..+|+++....+.+|
T Consensus 154 GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~-~g~wigala~~edWlvCGgGp~lslw 232 (325)
T KOG0649|consen 154 GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPD-WGKWIGALAVNEDWLVCGGGPKLSLW 232 (325)
T ss_pred CCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcc-cCceeEEEeccCceEEecCCCceeEE
Confidence 99999999998556678999999999999999986643211110 00000100 01123566677889999999999999
Q ss_pred EcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCC
Q 001248 979 ETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ 1058 (1114)
Q Consensus 979 d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 1058 (1114)
.++..++...+... .++..+.|. ...+++++..+.|.-|.+. |.+...+. .++ -..++..+..+
T Consensus 233 hLrsse~t~vfpip---a~v~~v~F~--~d~vl~~G~g~~v~~~~l~-Gvl~a~ip------~~s----~~c~s~s~~~~ 296 (325)
T KOG0649|consen 233 HLRSSESTCVFPIP---ARVHLVDFV--DDCVLIGGEGNHVQSYTLN-GVLQANIP------VES----TACYSASWQTS 296 (325)
T ss_pred eccCCCceEEEecc---cceeEeeee--cceEEEeccccceeeeeec-cEEEEecc------CCc----cceeeecccCC
Confidence 99999999988764 467778884 4467778888899999875 44444433 111 11123333332
Q ss_pred CCCeEEEEeCCCcEEEEe
Q 001248 1059 EPNEFALGLSDGGVHVFE 1076 (1114)
Q Consensus 1059 d~~~l~s~~~Dg~v~vW~ 1076 (1114)
--++|-.++-.+.+.++.
T Consensus 297 p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 297 PIKFISIAGFSNKLHILK 314 (325)
T ss_pred ceEEEEecccceeeeeee
Confidence 234566666667766653
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.9e-15 Score=163.08 Aligned_cols=600 Identities=12% Similarity=0.096 Sum_probs=337.9
Q ss_pred CcceeEecc-CCCCceEEEEcCC-----------CCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCccccccc
Q 001248 348 PKTVTRTLN-QGSSPMSMDFHPV-----------QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAAL 415 (1114)
Q Consensus 348 ~~~~~~~~~-h~~~v~~v~~spd-----------g~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 415 (1114)
.-+.++.+. |...|+.+.|.|- .+.+||++...|.|.+||...+..+. .
T Consensus 44 s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~-------------------~ 104 (1062)
T KOG1912|consen 44 SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVIN-------------------W 104 (1062)
T ss_pred hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhh-------------------h
Confidence 344455555 8899999999773 34578889999999999999887665 3
Q ss_pred ccCCCCCeeEEEEcC---CC-CeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCE
Q 001248 416 VKDPGVSVNRVIWSP---DG-SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 491 (1114)
Q Consensus 416 ~~~h~~~V~~l~~sp---dg-~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i 491 (1114)
+..|.++|..++|-+ +. ..|++-....++.+|+..+|+.+- ....-.....|+.+.|-+.. .+..-+..|.+
T Consensus 105 l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~W---k~~ys~~iLs~f~~DPfd~r-h~~~l~s~g~v 180 (1062)
T KOG1912|consen 105 LSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFW---KYDYSHEILSCFRVDPFDSR-HFCVLGSKGFV 180 (1062)
T ss_pred hcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceee---ccccCCcceeeeeeCCCCcc-eEEEEccCceE
Confidence 778889999999876 44 456666777889999999998665 33334456677888886554 34444445666
Q ss_pred EEEeCCC-------CcceeEeecccc----------------C-------EEEEeeccCCCceEEEEEecCCeEEEEEcC
Q 001248 492 KVWDATN-------GAKQYIFEGHEA----------------P-------VYSVCPHHKENIQFIFSTALDGKIKAWLYD 541 (1114)
Q Consensus 492 ~iwd~~~-------~~~~~~~~~h~~----------------~-------v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~ 541 (1114)
.+-+.-. |+..+.-..|.. . ..+..|.+.+.-+-++.....+.+.++|++
T Consensus 181 l~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle 260 (1062)
T KOG1912|consen 181 LSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLE 260 (1062)
T ss_pred EEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcch
Confidence 5555321 222222222222 0 011222233332334445567778899988
Q ss_pred CCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCC----------------
Q 001248 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS---------------- 605 (1114)
Q Consensus 542 ~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---------------- 605 (1114)
-..+......+.+.+.-+.+-|++++ ..|+++-.+|.+.+|-.+.
T Consensus 261 ~~~~l~vvpier~~akfv~vlP~~~r-------------------d~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl 321 (1062)
T KOG1912|consen 261 YECCLAVVPIERGGAKFVDVLPDPRR-------------------DALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDL 321 (1062)
T ss_pred hhceeEEEEeccCCcceeEeccCCCc-------------------ceEEEEecCCeEEEEEeeccCccccccchhhcccc
Confidence 77666666666665555666666543 3588888999999997554
Q ss_pred cceEEEeccCCCCCCcCeEEEcCC-CCEEEEEeCCCcEEEEEccCCccceeeccccccccc---------cCCCCCCCCc
Q 001248 606 VQLLTSIDADGGLPASPRIRFNKD-GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS---------RTSENSKPTI 675 (1114)
Q Consensus 606 ~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 675 (1114)
+.....+..-.... .......|. ...++.--.+|.+.+|.+.++........+...... .........+
T Consensus 322 ~~Q~~~vr~m~~~r-p~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~L 400 (1062)
T KOG1912|consen 322 GEQVHVVRPMEEFR-PVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISL 400 (1062)
T ss_pred ccceEEEeechhcc-cceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccch
Confidence 22222221111111 122333343 445555566788899998876322111110000000 0000000011
Q ss_pred cchhhhhhhhccccccccccccccccC---CCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCcccccc
Q 001248 676 SPISAAAAAAATSAGLADRAASMVSIP---GMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 752 (1114)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 752 (1114)
+.++ +-.....+.+..++.... ...+.......-..++.|...|+|.++|+.+......+. .|..
T Consensus 401 S~dg-----~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fs-------vht~ 468 (1062)
T KOG1912|consen 401 SDDG-----SHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFS-------VHTS 468 (1062)
T ss_pred hhcC-----CCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhc-------cccc
Confidence 2221 001111111111111100 001111111123457889999999999998765544443 3889
Q ss_pred ceEEEEEccCcceeeecccC--ceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCC
Q 001248 753 KISRLIFTNSGNAILALASN--AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 830 (1114)
Q Consensus 753 ~i~~l~~s~~~~~l~~~~~d--g~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~ 830 (1114)
.|.++.|..+...+-.+... ..-. .....+.+-++.+|.-+...-.......+|+.+..|..+
T Consensus 469 ~VkgleW~g~sslvSfsys~~n~~sg---------------~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~ 533 (1062)
T KOG1912|consen 469 LVKGLEWLGNSSLVSFSYSHVNSASG---------------GVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSG 533 (1062)
T ss_pred ceeeeeeccceeEEEeeecccccccc---------------ceeeeEEEEEcccccccccccCCCCCcCcceeeeecccC
Confidence 99999998777644322221 0000 001123455667776554332223467899999999999
Q ss_pred CEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEe-cCCC----------------cEEEEEeCCCcEEEEEccc-
Q 001248 831 SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFH-PQDN----------------NIIAIGMDDSSIQIYNVRV- 891 (1114)
Q Consensus 831 ~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s-p~d~----------------~~la~g~~dg~v~iwd~~~- 891 (1114)
+|++..- +.-+.+||+++..+++...-.-.-|+.+.|+ | .- +..+..+ +..+++.+..
T Consensus 534 ~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~-~~~si~qk~ls~q~sms~n~vv~ds--~es~~~~~~~~ 610 (1062)
T KOG1912|consen 534 RYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLP-KHPSIKQKELSKQSSMSENLVVLDS--VESRIYHITLS 610 (1062)
T ss_pred ceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeeccc-CCCCcccccchhhhhhhhceeeecc--ccchheehhhh
Confidence 9999998 8889999999888777665444458999998 3 11 1333333 2333333321
Q ss_pred ------ceEE-EeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCC
Q 001248 892 ------DEVK-SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ 964 (1114)
Q Consensus 892 ------~~~~-~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg 964 (1114)
+... ...+...-.+..++|- +..|+.|..+|.+.+||+....... ....+. +. .......+-|..
T Consensus 611 a~~~sdgsq~~~a~esfafal~~mAwk--~d~lv~GD~~GNl~~WDlg~R~SRg--~~d~p~-~r---a~~l~~~~ipG~ 682 (1062)
T KOG1912|consen 611 ALVVSDGSQVNTAWESFAFALCAMAWK--DDILVVGDVEGNLVVWDLGRRQSRG--VRDSPD-PR---AHSLTFPQIPGD 682 (1062)
T ss_pred hhhhccccchhhHHHHHHHHHHhhhcc--CCeeEeecccCceeEEecccccccC--ccCCCC-ch---hhheecccCCCC
Confidence 1110 1111111233446774 6789999999999999987643221 111111 11 122334445554
Q ss_pred cEEEEEeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeee
Q 001248 965 IHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR 1030 (1114)
Q Consensus 965 ~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~ 1030 (1114)
..+++-....+-+||.+....+..+.....+..+..+.+......++. .|.++|+-.+......
T Consensus 683 ~~~lvl~~d~~~lwdtk~~~lV~siag~dssfrlldvdlc~~~~~~l~--~d~~~Rf~~m~mks~~ 746 (1062)
T KOG1912|consen 683 HTTLVLELDWLPLWDTKADTLVLSIAGMDSSFRLLDVDLCEKSPLVLP--NDNKERFRVMPMKSPP 746 (1062)
T ss_pred ceEEEEecCcceecccccceeeeeeccCCcceEEEEEEecccCceecC--CCCceeEEeccccCCc
Confidence 455555666789999998888877743233445566666554444432 3447777766655443
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.7e-15 Score=168.06 Aligned_cols=279 Identities=10% Similarity=0.119 Sum_probs=178.2
Q ss_pred cccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecc-cCceEEEEeecccccCCCCCccccc
Q 001248 717 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALA-SNAIHLLWKWQRTERNSSGKATASV 795 (1114)
Q Consensus 717 l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~ 795 (1114)
.++...++.|.+|++...........+. .......++++|+++.|++++ .++.|.+|++..
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-----~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~------------- 66 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-----VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIAD------------- 66 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-----cCCCCccEEECCCCCEEEEEECCCCcEEEEEECC-------------
Confidence 3445678999999996432222222221 234567889999999887664 468888888741
Q ss_pred cccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe--CCeEEEEEcCC-Ccc---ccccCCCCCCeEEEEEec
Q 001248 796 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMT-FKT---MATFMPPPPAATFLAFHP 869 (1114)
Q Consensus 796 ~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--dg~i~iwd~~~-~~~---~~~~~~~~~~i~~l~~sp 869 (1114)
+|.+..... .........++++|+++++++++ ++.|.+|++.+ +.. +..+. +.....+++++|
T Consensus 67 --------~g~l~~~~~--~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p 135 (330)
T PRK11028 67 --------DGALTFAAE--SPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP 135 (330)
T ss_pred --------CCceEEeee--ecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC
Confidence 111100000 00223456899999999999887 78999999964 222 22222 223467789999
Q ss_pred CCCcEE-EEEeCCCcEEEEEcccceEEE-------eecccccCeeEEEEcCCCCEEEEEeC-CCcEEEEeCCCC--cccc
Q 001248 870 QDNNII-AIGMDDSSIQIYNVRVDEVKS-------KLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGW--EKQK 938 (1114)
Q Consensus 870 ~d~~~l-a~g~~dg~v~iwd~~~~~~~~-------~l~~h~~~V~~l~~s~d~~~l~s~s~-D~~v~iwd~~~~--~~~~ 938 (1114)
+++++ ++...++.|.+||+.+...+. .... ......++|+|||++|+++.. +++|.+|+++.. +...
T Consensus 136 -~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~ 213 (330)
T PRK11028 136 -DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIEC 213 (330)
T ss_pred -CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEE
Confidence 77666 555567999999997633221 1111 234568999999999988876 899999999742 2211
Q ss_pred ccccccCCCCCCCCCCceEEEEccCCcEEEEE--eCCeEEEEEcCCCc----eeeeeecCCCCcCeeEEEECCCCCEEEE
Q 001248 939 NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLE----CVKQWVPRESSAPITHATFSCDSQLVYA 1012 (1114)
Q Consensus 939 ~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~--~d~~i~iwd~~~~~----~~~~~~~~~h~~~v~~l~~s~dg~~l~s 1012 (1114)
...+...............+.|+|||++|+++ .++.|.+|++.... .+..... ......++|+|||++|++
T Consensus 214 ~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~---~~~p~~~~~~~dg~~l~v 290 (330)
T PRK11028 214 VQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT---ETQPRGFNIDHSGKYLIA 290 (330)
T ss_pred EEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec---cccCCceEECCCCCEEEE
Confidence 11111111111111123468999999999995 46789999986443 2222221 234568999999999998
Q ss_pred EEc-CCeEEEEEcC--CCee
Q 001248 1013 CFL-DATVCVFSAA--NLKL 1029 (1114)
Q Consensus 1013 ~s~-Dg~I~vwd~~--~~~~ 1029 (1114)
++. +++|.+|+++ ++.+
T Consensus 291 a~~~~~~v~v~~~~~~~g~l 310 (330)
T PRK11028 291 AGQKSHHISVYEIDGETGLL 310 (330)
T ss_pred EEccCCcEEEEEEcCCCCcE
Confidence 876 8999999874 4444
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-15 Score=151.70 Aligned_cols=241 Identities=14% Similarity=0.203 Sum_probs=184.5
Q ss_pred CCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEEcccceEE
Q 001248 818 EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVK 895 (1114)
Q Consensus 818 ~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg--~v~iwd~~~~~~~ 895 (1114)
...+..+.|+.|...|..|+....++|.................|..+-|+. .++|..+.+. .+++++++.+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCceE
Confidence 3446667799999999999966678888876554333333445677777875 4777666554 4999999988888
Q ss_pred EeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-E--eC
Q 001248 896 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V--HE 972 (1114)
Q Consensus 896 ~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~--~d 972 (1114)
..+. ...+|.+|.++ .++|+++=.+. |.|||+.+-+. +.....-.+....+.++.+++++.|||. + ..
T Consensus 82 Ce~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~Mkl-----LhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~ 152 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKL-----LHTIETTPPNPKGLCALSPNNANCYLAYPGSTTS 152 (391)
T ss_pred EEEe-cCCceEEEEEc--cceEEEEEccc-EEEEeccccee-----ehhhhccCCCccceEeeccCCCCceEEecCCCCC
Confidence 7776 45678899986 45677666665 99999998443 2222222122234566666667789998 3 56
Q ss_pred CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCe-EEEEEcCCCeeeEEeCCCcccCCCCCCCCccce
Q 001248 973 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT-VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPL 1051 (1114)
Q Consensus 973 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~-I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1051 (1114)
|.|.+||+.+.+.+..+. .|.+++.+++|+++|.+||++|+.|+ ||||.+.+|+.+..++...+ + +...
T Consensus 153 GdV~l~d~~nl~~v~~I~--aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~-~-------~~Iy 222 (391)
T KOG2110|consen 153 GDVVLFDTINLQPVNTIN--AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY-P-------VSIY 222 (391)
T ss_pred ceEEEEEcccceeeeEEE--ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce-e-------eEEE
Confidence 899999999999988887 89999999999999999999999997 89999999999999883333 2 4455
Q ss_pred EEEecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1052 VIAAHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1052 ~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
+++|+| |+++|++.+..++|++|.+....
T Consensus 223 SL~Fs~-ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 223 SLSFSP-DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEECC-CCCeEEEecCCCeEEEEEecccc
Confidence 999999 68999999999999999998866
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5e-16 Score=152.46 Aligned_cols=344 Identities=13% Similarity=0.182 Sum_probs=235.7
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEE-EEeCCCcEEEEEccCCccceeec
Q 001248 579 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA-VSTNDNGIKILATSDGIRLLRTF 657 (1114)
Q Consensus 579 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~-~~~~dg~i~iwd~~~~~~~~~~~ 657 (1114)
..+|+|+|+++++.+.- .+.|-|..+.+..+.+..- ..|.-+.|..|.-+++ ....++.|.+|++.... -.-.+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cl---dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe-w~ckI 87 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCL---DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE-WYCKI 87 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHH---HHhhheeeeccceeeeeeeeccceEEEEEeecce-eEEEe
Confidence 46788888899988866 7888888887766555432 3477789998876655 45778899999987652 11111
Q ss_pred cccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCC
Q 001248 658 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP 737 (1114)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~ 737 (1114)
.
T Consensus 88 d------------------------------------------------------------------------------- 88 (447)
T KOG4497|consen 88 D------------------------------------------------------------------------------- 88 (447)
T ss_pred c-------------------------------------------------------------------------------
Confidence 1
Q ss_pred ccccccccCccccccceEEEEEccCcceeeeccc-CceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCC
Q 001248 738 NQCRSLRLPENLRATKISRLIFTNSGNAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSN 816 (1114)
Q Consensus 738 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~ 816 (1114)
.....+..+.+||||+.++..++ +-.|.||.+.+.. +..+..
T Consensus 89 -----------eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~--------------------~~~~~~------ 131 (447)
T KOG4497|consen 89 -----------EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK--------------------GYLLPH------ 131 (447)
T ss_pred -----------cCCCcceeeeECCCcceEeeeecceeEEEEEEeccce--------------------eEEecc------
Confidence 13467788999999977766555 7888888876321 112211
Q ss_pred CCCCccEEEEeeCCCEEEEEe--C--CeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeC--CCcEEEEEcc
Q 001248 817 PEEAVPCFALSKNDSYVMSAS--G--GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD--DSSIQIYNVR 890 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~~l~~~~--d--g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~--dg~v~iwd~~ 890 (1114)
....+..++|++||++.+..+ | ..+.|..-+....++.+....-..+.+.|+| ||+.||+=.. +-.|+.|.
T Consensus 132 pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsP-dg~~laVwd~~Leykv~aYe-- 208 (447)
T KOG4497|consen 132 PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSP-DGNWLAVWDNVLEYKVYAYE-- 208 (447)
T ss_pred cccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECC-CCcEEEEecchhhheeeeee--
Confidence 334567899999999999887 3 2255555556666777776777789999999 8877775322 11222221
Q ss_pred cceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccc--------------------------------
Q 001248 891 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK-------------------------------- 938 (1114)
Q Consensus 891 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~-------------------------------- 938 (1114)
-.-.+..++|+|.+++|+.|+.|+.++|.|--+.+...
T Consensus 209 ----------~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLs 278 (447)
T KOG4497|consen 209 ----------RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLS 278 (447)
T ss_pred ----------eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccc
Confidence 12347789999999999999999999887643332211
Q ss_pred --------------------------ccccccCCCCCCCCCCceEEEEccCCcEEEEEeC---CeEEEEEcCCCceeeee
Q 001248 939 --------------------------NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE---TQLAIFETTKLECVKQW 989 (1114)
Q Consensus 939 --------------------------~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d---~~i~iwd~~~~~~~~~~ 989 (1114)
...++...........+..++|++|..|+++-.| ..+-+||++..+....+
T Consensus 279 f~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL 358 (447)
T KOG4497|consen 279 FTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL 358 (447)
T ss_pred cCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh
Confidence 0001111111222346788999999999999655 46999999988876655
Q ss_pred ecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCC
Q 001248 990 VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD 1069 (1114)
Q Consensus 990 ~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~D 1069 (1114)
.- ..+|....|.|....|+.+.....+++|..+....++.-. .| .....+.|+- +|..++..+.|
T Consensus 359 iQ---k~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~------~G-----F~i~~l~W~~-~g~~i~l~~kD 423 (447)
T KOG4497|consen 359 IQ---KHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPK------KG-----FNIQKLQWLQ-PGEFIVLCGKD 423 (447)
T ss_pred hh---ccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCC------CC-----ceeeeEEecC-CCcEEEEEcCC
Confidence 42 5689999999999999888878889999987755554322 12 3344899987 57888888888
Q ss_pred Cc
Q 001248 1070 GG 1071 (1114)
Q Consensus 1070 g~ 1071 (1114)
.-
T Consensus 424 af 425 (447)
T KOG4497|consen 424 AF 425 (447)
T ss_pred ce
Confidence 63
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.6e-17 Score=187.07 Aligned_cols=278 Identities=13% Similarity=0.173 Sum_probs=210.5
Q ss_pred cCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcce----eeecccCceEEEEeecccccCCCCCcccccc
Q 001248 721 ESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA----ILALASNAIHLLWKWQRTERNSSGKATASVA 796 (1114)
Q Consensus 721 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~----l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 796 (1114)
+.+.++.+|.+.............. .....+-..++|.+.|.. |+.+.+||.|.+|+.....
T Consensus 36 st~~slEifeld~~~~~~dlk~~~s--~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~------------ 101 (1049)
T KOG0307|consen 36 STSASLEIFELDFSDESSDLKPVGS--LQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASII------------ 101 (1049)
T ss_pred ccccccceeeecccCcccccccccc--ccccccceeeeecccCCCccceeeccccCCceEEecchhhc------------
Confidence 4556777777665443321111110 124567788999988876 7888889999999865310
Q ss_pred ccccCCCCCccccccCCCCCCCCCccEEEEeeCCC-EEEEEe-CCeEEEEEcCCCccccccC--CCCCCeEEEEEecCCC
Q 001248 797 PQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS-YVMSAS-GGKISLFNMMTFKTMATFM--PPPPAATFLAFHPQDN 872 (1114)
Q Consensus 797 ~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~-~l~~~~-dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~sp~d~ 872 (1114)
.+...........|.+.|..+.|++... +||+|+ ||.|.|||+...+...++. .....|.+++|+....
T Consensus 102 -------~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvq 174 (1049)
T KOG0307|consen 102 -------ANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVS 174 (1049)
T ss_pred -------cCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhh
Confidence 0110000111123999999999999776 899998 8999999998866655552 2457899999998778
Q ss_pred cEEEEEeCCCcEEEEEcccceEEEeeccccc--CeeEEEEcCCC-CEEEEEeCCC---cEEEEeCCCCccccccccccCC
Q 001248 873 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK--RITGLAFSHAL-NVLVSSGADS---QLCVWSSDGWEKQKNRFLQIPT 946 (1114)
Q Consensus 873 ~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~--~V~~l~~s~d~-~~l~s~s~D~---~v~iwd~~~~~~~~~~~~~~~~ 946 (1114)
++||+++.+|.+.|||++..+.+..+..|.+ .+..|+|+|++ ..|++++.|. .|.+||++.- ...+++..
T Consensus 175 hILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a----ssP~k~~~ 250 (1049)
T KOG0307|consen 175 HILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA----SSPLKILE 250 (1049)
T ss_pred HHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc----CCchhhhc
Confidence 8999999999999999999988888877765 46789999986 4566666553 6999998763 34566777
Q ss_pred CCCCCCCCceEEEEccCC-cEEEE-EeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCC-EEEEEEcCCeEEEEE
Q 001248 947 GRTPTAQSDTRVQFHQDQ-IHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACFLDATVCVFS 1023 (1114)
Q Consensus 947 ~~~~~~~~i~~v~fspdg-~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~s~Dg~I~vwd 1023 (1114)
+|.. .|.++.|++.+ ++|++ +.|+.+.+|+.++++.+..+.. ...++..+.|+|..- .+++++-||.|.||.
T Consensus 251 ~H~~---GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~--~~nW~fdv~w~pr~P~~~A~asfdgkI~I~s 325 (1049)
T KOG0307|consen 251 GHQR---GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA--QGNWCFDVQWCPRNPSVMAAASFDGKISIYS 325 (1049)
T ss_pred cccc---ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC--CCcceeeeeecCCCcchhhhheeccceeeee
Confidence 8875 89999999976 77777 6999999999999999999874 468999999999665 788999999999999
Q ss_pred cCCCe
Q 001248 1024 AANLK 1028 (1114)
Q Consensus 1024 ~~~~~ 1028 (1114)
+.++.
T Consensus 326 l~~~~ 330 (1049)
T KOG0307|consen 326 LQGTD 330 (1049)
T ss_pred eecCC
Confidence 87665
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.2e-16 Score=158.88 Aligned_cols=246 Identities=14% Similarity=0.199 Sum_probs=175.4
Q ss_pred CCcceeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEE
Q 001248 347 LPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV 426 (1114)
Q Consensus 347 ~~~~~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l 426 (1114)
++...-..-+|+++|..++|+|-....+|+|+.|.+|.||++..+..... ..-+...|.||...|--+
T Consensus 70 ~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~------------ltepvv~L~gH~rrVg~V 137 (472)
T KOG0303|consen 70 MDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD------------LTEPVVELYGHQRRVGLV 137 (472)
T ss_pred cCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC------------cccceEEEeecceeEEEE
Confidence 34444455679999999999998887899999999999999977654431 111122589999999999
Q ss_pred EEcC-CCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEe
Q 001248 427 IWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 505 (1114)
Q Consensus 427 ~~sp-dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 505 (1114)
+|+| -...|++++.|.+|.|||+.+|+.+. ++. |...|+++.|+.||. +++|.+.|+.|+|||.++++.+..-
T Consensus 138 ~wHPtA~NVLlsag~Dn~v~iWnv~tgeali---~l~-hpd~i~S~sfn~dGs--~l~TtckDKkvRv~dpr~~~~v~e~ 211 (472)
T KOG0303|consen 138 QWHPTAPNVLLSAGSDNTVSIWNVGTGEALI---TLD-HPDMVYSMSFNRDGS--LLCTTCKDKKVRVIDPRRGTVVSEG 211 (472)
T ss_pred eecccchhhHhhccCCceEEEEeccCCceee---ecC-CCCeEEEEEeccCCc--eeeeecccceeEEEcCCCCcEeeec
Confidence 9999 45678999999999999999998765 565 999999999999999 7999999999999999999999888
Q ss_pred eccccCEEEEeeccCCCceEEEEEe---cCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEe
Q 001248 506 EGHEAPVYSVCPHHKENIQFIFSTA---LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 582 (1114)
Q Consensus 506 ~~h~~~v~~~~~~~~~~~~~l~s~~---~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~ 582 (1114)
.+|.+.=..-++ +-.+|.++.+|- .++.+-+||..+.+....+..- .....+..--+
T Consensus 212 ~~heG~k~~Rai-fl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~el-------------------DtSnGvl~PFy 271 (472)
T KOG0303|consen 212 VAHEGAKPARAI-FLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQEL-------------------DTSNGVLLPFY 271 (472)
T ss_pred ccccCCCcceeE-EeccCceeeeccccccccceeccCcccccCcceeEEe-------------------ccCCceEEeee
Confidence 788754322121 234556444443 3678999998765543321110 00112233344
Q ss_pred cCCCCEEEE-EeCCCeEEEEECCCcce-EEEeccCCCCCCcCeEEEcCCC
Q 001248 583 DTTKNRFLA-AGDDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNKDG 630 (1114)
Q Consensus 583 ~~~~~~l~~-~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~d~ 630 (1114)
+++.+.++. |-.|+.|+.|.+....+ +.-+.......+-..+.|-|..
T Consensus 272 D~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPKR 321 (472)
T KOG0303|consen 272 DPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPKR 321 (472)
T ss_pred cCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCccccccccccc
Confidence 555555554 55899999999876552 3333333333445677777753
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-16 Score=151.28 Aligned_cols=303 Identities=11% Similarity=0.148 Sum_probs=197.8
Q ss_pred eEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEee-ccccCEEEEeeccCCCceEEEEEecCCeEE
Q 001248 458 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIK 536 (1114)
Q Consensus 458 ~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~ 536 (1114)
...+.+|.+.|+++.|-.++. |.+|..-|.|++|++++.+.+..+. .|...|+.+...+ + ..+.+-+.|..+.
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~r---L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p--~-d~l~tqgRd~~L~ 80 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANER---LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIP--N-DSLDTQGRDPLLI 80 (323)
T ss_pred eeEeccccchheehhhccchh---hhcccccceEEEEEeecCccchhhhhhccceeeceeecC--C-cchhhcCCCceEE
Confidence 346789999999999998876 8999999999999999998888888 5677888887433 2 4789999999999
Q ss_pred EEEcCCCCCeeeecCCCCeeEEEEEe-----cCCCeEEeeecccceeEEEecCCCCEEEEEeCCC-eEEEEECCCcceEE
Q 001248 537 AWLYDNLGSRVDYEAPGRWCTTMAYS-----ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF-SIKFWDMDSVQLLT 610 (1114)
Q Consensus 537 ~wd~~~~~~~~~~~~~~~~v~~~~~s-----~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~ 610 (1114)
+|++.-...... +.-.+.++.|. +.++.. ...++.-++.. .+++-|......+.
T Consensus 81 lw~ia~s~~i~i---~Si~~nslgFCrfSl~~~~k~~-----------------eqll~yp~rgsde~h~~D~g~~tqv~ 140 (323)
T KOG0322|consen 81 LWTIAYSAFISI---HSIVVNSLGFCRFSLVKKPKNS-----------------EQLLEYPSRGSDETHKQDGGDTTQVQ 140 (323)
T ss_pred EEEccCcceEEE---eeeeccccccccceeccCCCcc-----------------hhheecCCcccchhhhhccCccceeE
Confidence 999875332221 11122222222 222100 01111111100 02222322222222
Q ss_pred Eecc--CCCCCCcCeEEEcC-CC--CEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhh
Q 001248 611 SIDA--DGGLPASPRIRFNK-DG--CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAA 685 (1114)
Q Consensus 611 ~~~~--~~~~~~v~~~~~s~-d~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1114)
.... ....+.+.+..+.- ++ -++++|.++|.+.+||+.++...+ .+.....
T Consensus 141 i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~-~~~~~~k----------------------- 196 (323)
T KOG0322|consen 141 IADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKII-QLPQSSK----------------------- 196 (323)
T ss_pred ccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceee-ccccccc-----------------------
Confidence 2211 11122344444322 22 256678889999999998873222 1211000
Q ss_pred ccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcce
Q 001248 686 ATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA 765 (1114)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 765 (1114)
...+...|..+|.++.|.+.-..
T Consensus 197 ---------------------------------------------------------v~~~~ash~qpvlsldyas~~~r 219 (323)
T KOG0322|consen 197 ---------------------------------------------------------VESPNASHKQPVLSLDYASSCDR 219 (323)
T ss_pred ---------------------------------------------------------cccchhhccCcceeeeechhhcC
Confidence 00111237888999999887777
Q ss_pred eeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEE
Q 001248 766 ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLF 844 (1114)
Q Consensus 766 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iw 844 (1114)
=++++.+..+..|+++....... -+..+. + ..-.+..+.+-||++.+|+++ |+.||||
T Consensus 220 Gisgga~dkl~~~Sl~~s~gslq---------------~~~e~~--l----knpGv~gvrIRpD~KIlATAGWD~RiRVy 278 (323)
T KOG0322|consen 220 GISGGADDKLVMYSLNHSTGSLQ---------------IRKEIT--L----KNPGVSGVRIRPDGKILATAGWDHRIRVY 278 (323)
T ss_pred CcCCCccccceeeeeccccCccc---------------ccceEE--e----cCCCccceEEccCCcEEeecccCCcEEEE
Confidence 78888888888888764211100 000111 1 234577889999999999999 9999999
Q ss_pred EcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEc
Q 001248 845 NMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV 889 (1114)
Q Consensus 845 d~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~ 889 (1114)
..++...+..++.|...|.+++|+| +..++|.++.|++|.+|++
T Consensus 279 swrtl~pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 279 SWRTLNPLAVLKYHSAGVNAVAFSP-DCELMAAASKDARISLWKL 322 (323)
T ss_pred EeccCCchhhhhhhhcceeEEEeCC-CCchhhhccCCceEEeeec
Confidence 9999999999999999999999999 8899999999999999986
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.1e-16 Score=156.46 Aligned_cols=198 Identities=13% Similarity=0.184 Sum_probs=149.2
Q ss_pred EEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC--CCCeEEEEeCCCeEEEEEcc
Q 001248 373 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGSLFGVAYSRHIVQIYSYH 450 (1114)
Q Consensus 373 ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~las~~~dg~i~iwd~~ 450 (1114)
.+|++-..|.|++||..+++.+. .+++|...++.++|.. ....+.+|+.||+|++||++
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~-------------------~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R 102 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLE-------------------EFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR 102 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhh-------------------eecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEee
Confidence 58889999999999999988776 3788888899999987 46678999999999999999
Q ss_pred CCceeeeeEeecccc-CCeeEEEecCCCCeeEEEEec----CCCCEEEEeCCCCcc-eeEe-eccccCEEEEeeccCCCc
Q 001248 451 GGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITCG----DDKTIKVWDATNGAK-QYIF-EGHEAPVYSVCPHHKENI 523 (1114)
Q Consensus 451 ~~~~~~~~~~l~~h~-~~V~~v~~s~d~~~~~l~s~~----~d~~i~iwd~~~~~~-~~~~-~~h~~~v~~~~~~~~~~~ 523 (1114)
+.....+. ...+|. .+..+++..-.++ ++++|. .+-.|.+||++..+. +..+ ..|...|++++|+|+..
T Consensus 103 s~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p- 178 (376)
T KOG1188|consen 103 SQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP- 178 (376)
T ss_pred cchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC-
Confidence 87655433 345555 4667777765666 677765 356799999998766 5544 57999999999999755
Q ss_pred eEEEEEecCCeEEEEEcCCCCCe---eeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEE
Q 001248 524 QFIFSTALDGKIKAWLYDNLGSR---VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF 600 (1114)
Q Consensus 524 ~~l~s~~~d~~i~~wd~~~~~~~---~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 600 (1114)
++|++|+.||.|.++|+...... ...-.+...|..+.|..++- ..+.+.+..++..+
T Consensus 179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~y--------------------krI~clTH~Etf~~ 238 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKY--------------------KRIMCLTHMETFAI 238 (376)
T ss_pred CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCc--------------------ceEEEEEccCceeE
Confidence 79999999999999999764221 11122333455555555441 34888889999999
Q ss_pred EECCCcceEEEec
Q 001248 601 WDMDSVQLLTSID 613 (1114)
Q Consensus 601 wd~~~~~~~~~~~ 613 (1114)
|+++.+.....+.
T Consensus 239 ~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 239 YELEDGSEETWLE 251 (376)
T ss_pred EEccCCChhhccc
Confidence 9999887655554
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.1e-16 Score=155.37 Aligned_cols=151 Identities=18% Similarity=0.265 Sum_probs=117.6
Q ss_pred EEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEE
Q 001248 481 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMA 560 (1114)
Q Consensus 481 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~ 560 (1114)
.++++-..|+|++||..+++.+..++++...++.+.|........+.+++.||+|++||++.......+...
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~-------- 113 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT-------- 113 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc--------
Confidence 678888899999999999999999999999999999876545578999999999999999976554332211
Q ss_pred EecCCCeEEeeecccceeEEEecCCCCEEEEEe----CCCeEEEEECCCcce-EEEeccCCCCCCcCeEEEcC-CCCEEE
Q 001248 561 YSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG----DDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNK-DGCLLA 634 (1114)
Q Consensus 561 ~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~-d~~~l~ 634 (1114)
++......+++.+..++.+++|. .+-.|.+||++..+. +..+. ..|...|+++.|+| +.++|+
T Consensus 114 ----------~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~-eSH~DDVT~lrFHP~~pnlLl 182 (376)
T KOG1188|consen 114 ----------QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLN-ESHNDDVTQLRFHPSDPNLLL 182 (376)
T ss_pred ----------CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhh-hhccCcceeEEecCCCCCeEE
Confidence 11122455555555666777765 478899999998776 44443 34567899999999 678999
Q ss_pred EEeCCCcEEEEEccCC
Q 001248 635 VSTNDNGIKILATSDG 650 (1114)
Q Consensus 635 ~~~~dg~i~iwd~~~~ 650 (1114)
+|+.||.|.+||+...
T Consensus 183 SGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 183 SGSVDGLVNLFDTKKD 198 (376)
T ss_pred eecccceEEeeecCCC
Confidence 9999999999998644
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5e-16 Score=149.87 Aligned_cols=257 Identities=15% Similarity=0.234 Sum_probs=185.0
Q ss_pred ccCCCCceEEEEcCCCCeEEEEEecC-------CcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEE
Q 001248 355 LNQGSSPMSMDFHPVQQTLLLVGTNV-------GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 427 (1114)
Q Consensus 355 ~~h~~~v~~v~~spdg~~ll~tg~~d-------g~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 427 (1114)
+.|.++||.++-+|-.+++|+|...+ ..+.||.+........ . ........+-..+-+.|.|+.
T Consensus 60 ~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~--~-------~tlE~v~~Ldteavg~i~cve 130 (370)
T KOG1007|consen 60 FHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSN--S-------STLECVASLDTEAVGKINCVE 130 (370)
T ss_pred hcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccc--c-------chhhHhhcCCHHHhCceeeEE
Confidence 34789999999999999899987653 2367888764322100 0 001111112234556999999
Q ss_pred EcCCCCeEEEEeCCCeEEEEEccCCceeeeeEe---eccccCCeeEEEecC--CCCeeEEEEecCCCCEEEEeCCCCcce
Q 001248 428 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLE---IDAHVGGVNDIAFSH--PNKQLCVITCGDDKTIKVWDATNGAKQ 502 (1114)
Q Consensus 428 ~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~---l~~h~~~V~~v~~s~--d~~~~~l~s~~~d~~i~iwd~~~~~~~ 502 (1114)
|.|+++.||+-. |..|.+|++..+..+..... -.+|....++-+|+| ||. .+++. .|++++.||+++.++.
T Consensus 131 w~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn--qv~tt-~d~tl~~~D~RT~~~~ 206 (370)
T KOG1007|consen 131 WEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN--QVATT-SDSTLQFWDLRTMKKN 206 (370)
T ss_pred EcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc--eEEEe-CCCcEEEEEccchhhh
Confidence 999999999886 77899999998765321111 123566788899998 566 35544 4889999999998887
Q ss_pred eEe-eccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCC-CeeeecCCCCeeEEEEEecCCCeEEeeecccceeEE
Q 001248 503 YIF-EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 580 (1114)
Q Consensus 503 ~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~ 580 (1114)
..+ ..|...|..+.|+|... .+|++|+.||.|++||.+..+ ++..+..|.++|.++.|.|...
T Consensus 207 ~sI~dAHgq~vrdlDfNpnkq-~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hd-------------- 271 (370)
T KOG1007|consen 207 NSIEDAHGQRVRDLDFNPNKQ-HILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHD-------------- 271 (370)
T ss_pred cchhhhhcceeeeccCCCCce-EEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccc--------------
Confidence 766 46889999999887664 689999999999999998754 5568889999999999988654
Q ss_pred EecCCCCEEEEEeCCCeEEEEECCCcc-----------------------------eEEEeccCCCCCCcCeEEEcC-CC
Q 001248 581 QFDTTKNRFLAAGDDFSIKFWDMDSVQ-----------------------------LLTSIDADGGLPASPRIRFNK-DG 630 (1114)
Q Consensus 581 ~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------------------------~~~~~~~~~~~~~v~~~~~s~-d~ 630 (1114)
+++++++.|..|.+|....-. .+.++.. +...|.+++||. |-
T Consensus 272 ------qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyde--hEDSVY~~aWSsadP 343 (370)
T KOG1007|consen 272 ------QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDE--HEDSVYALAWSSADP 343 (370)
T ss_pred ------eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccc--cccceEEEeeccCCC
Confidence 357778888888888653211 1123332 356799999998 55
Q ss_pred CEEEEEeCCCcEEEEEc
Q 001248 631 CLLAVSTNDNGIKILAT 647 (1114)
Q Consensus 631 ~~l~~~~~dg~i~iwd~ 647 (1114)
-++++-+.||.+.|=.+
T Consensus 344 WiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 344 WIFASLSYDGRVIISSV 360 (370)
T ss_pred eeEEEeccCceEEeecC
Confidence 66778899999987654
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.5e-16 Score=173.73 Aligned_cols=320 Identities=16% Similarity=0.251 Sum_probs=218.5
Q ss_pred CeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeecc---ccCEEEEeec
Q 001248 442 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH---EAPVYSVCPH 518 (1114)
Q Consensus 442 g~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h---~~~v~~~~~~ 518 (1114)
..|..||... ..+...+-..+.|+|-.. .++++...-.|+|||.+.++.+..|..+ ...|+.+++-
T Consensus 1050 ~~i~~W~~~~---------~~~n~~~pk~~~~hpf~p--~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~li 1118 (1387)
T KOG1517|consen 1050 NPIGNWDQKF---------MTGNNQPPKTLKFHPFEP--QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELI 1118 (1387)
T ss_pred ccccchHHHH---------HhcCCCCCceeeecCCCc--eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeee
Confidence 3466777543 223333566788888888 5788877778999999999998877654 3568888887
Q ss_pred cCCCceEEEEEecCCeEEEEEcCCCC-CeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCe
Q 001248 519 HKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS 597 (1114)
Q Consensus 519 ~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 597 (1114)
...|..++++++.||.|++|+--... ....+-..-..+.++...+.|. . ..+.|.....+|+++|+-..
T Consensus 1119 Ne~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~---------~-~v~dWqQ~~G~Ll~tGd~r~ 1188 (1387)
T KOG1517|consen 1119 NEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGT---------G-LVVDWQQQSGHLLVTGDVRS 1188 (1387)
T ss_pred cccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCC---------C-eeeehhhhCCeEEecCCeeE
Confidence 77787899999999999999643221 1111111111122222222221 2 56778888888999888999
Q ss_pred EEEEECCCcceEEEeccCCCCCCcCeEEEcC-CCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCcc
Q 001248 598 IKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTIS 676 (1114)
Q Consensus 598 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (1114)
|+|||......+..+..... ..+++++-+- .|+++++|..||.|++||.+.....
T Consensus 1189 IRIWDa~~E~~~~diP~~s~-t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d----------------------- 1244 (1387)
T KOG1517|consen 1189 IRIWDAHKEQVVADIPYGSS-TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD----------------------- 1244 (1387)
T ss_pred EEEEecccceeEeecccCCC-ccceeecccccCCceEEEeecCCceEEeecccCCcc-----------------------
Confidence 99999998888877765432 3456665544 5799999999999999998654110
Q ss_pred chhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccc--e
Q 001248 677 PISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK--I 754 (1114)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~--i 754 (1114)
..|..|. .|+.. |
T Consensus 1245 -----------------------------------------------s~v~~~R------------------~h~~~~~I 1259 (1387)
T KOG1517|consen 1245 -----------------------------------------------SLVCVYR------------------EHNDVEPI 1259 (1387)
T ss_pred -----------------------------------------------ccceeec------------------ccCCcccc
Confidence 1112221 13333 8
Q ss_pred EEEEEccCcce-eeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEE
Q 001248 755 SRLIFTNSGNA-ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYV 833 (1114)
Q Consensus 755 ~~l~~s~~~~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l 833 (1114)
..+.+.+.|-. |++++.+|.|++||+........-. .+.-|+ ..+..+++.++++...+
T Consensus 1260 v~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~-----iv~~~~---------------yGs~lTal~VH~hapii 1319 (1387)
T KOG1517|consen 1260 VHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLT-----IVAHWE---------------YGSALTALTVHEHAPII 1319 (1387)
T ss_pred eeEEeecCCCcceeeeccCCeEEEEecccCcccccce-----eeeccc---------------cCccceeeeeccCCCee
Confidence 88888886655 9999999999999987531100000 000010 12358999999999999
Q ss_pred EEEeCCeEEEEEcCCCccccccCC-------CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccce
Q 001248 834 MSASGGKISLFNMMTFKTMATFMP-------PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE 893 (1114)
Q Consensus 834 ~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~ 893 (1114)
|+|+.+.|+||++.. +.+..++. ..+.+.|++|+| -.-+||+|+.|.+|.||.....+
T Consensus 1320 AsGs~q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1320 ASGSAQLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred eecCcceEEEEecCh-hhhcccccCcccccCcCCCcceeeecc-hhHhhhhccCCceEEEeecCCcC
Confidence 999999999999864 43333322 235689999999 88899999999999999876543
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.8e-15 Score=163.19 Aligned_cols=250 Identities=11% Similarity=0.104 Sum_probs=163.4
Q ss_pred CCccEEEEeeCCCEEEEEe--CCeEEEEEcC-CCcc--ccccCCCCCCeEEEEEecCCCcEEEEEe-CCCcEEEEEccc-
Q 001248 819 EAVPCFALSKNDSYVMSAS--GGKISLFNMM-TFKT--MATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRV- 891 (1114)
Q Consensus 819 ~~v~~v~~s~d~~~l~~~~--dg~i~iwd~~-~~~~--~~~~~~~~~~i~~l~~sp~d~~~la~g~-~dg~v~iwd~~~- 891 (1114)
.....++++||+++|++++ ++.|.+|++. ++.. ..... .......++|+| ++++|++++ .++.|.+|++.+
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~~ 112 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDH-QGRFLFSASYNANCVSVSPLDKD 112 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECC-CCCEEEEEEcCCCeEEEEEECCC
Confidence 4567789999999988775 6889999986 3332 22222 233567899999 777776665 588999999974
Q ss_pred c---eEEEeecccccCeeEEEEcCCCCEEEEE-eCCCcEEEEeCCCCccccc---cccccCCCCCCCCCCceEEEEccCC
Q 001248 892 D---EVKSKLKGHSKRITGLAFSHALNVLVSS-GADSQLCVWSSDGWEKQKN---RFLQIPTGRTPTAQSDTRVQFHQDQ 964 (1114)
Q Consensus 892 ~---~~~~~l~~h~~~V~~l~~s~d~~~l~s~-s~D~~v~iwd~~~~~~~~~---~~~~~~~~~~~~~~~i~~v~fspdg 964 (1114)
+ +.+..+.+ .....+++++|++++++++ ..++.|.+||+++...... .......+ .....++|+|||
T Consensus 113 g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g-----~~p~~~~~~pdg 186 (330)
T PRK11028 113 GIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG-----AGPRHMVFHPNQ 186 (330)
T ss_pred CCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCC-----CCCceEEECCCC
Confidence 2 22333332 2346778999999988654 4669999999986322110 11111222 245789999999
Q ss_pred cEEEEE--eCCeEEEEEcCC--Cc--eeeeeecC----CCCcCeeEEEECCCCCEEEEEEc-CCeEEEEEcCCCeeeEEe
Q 001248 965 IHFLVV--HETQLAIFETTK--LE--CVKQWVPR----ESSAPITHATFSCDSQLVYACFL-DATVCVFSAANLKLRCRI 1033 (1114)
Q Consensus 965 ~~l~~~--~d~~i~iwd~~~--~~--~~~~~~~~----~h~~~v~~l~~s~dg~~l~s~s~-Dg~I~vwd~~~~~~~~~~ 1033 (1114)
++++++ .++.|.+|++.. ++ .+..+... .+......+.|+|||++|+++.. ++.|.+|+++......++
T Consensus 187 ~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~ 266 (330)
T PRK11028 187 QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSF 266 (330)
T ss_pred CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEE
Confidence 999884 478999999973 32 23332211 11223456899999999998864 689999999643311111
Q ss_pred CCCcccCCCCCCCCccceEEEecCCCCCeEEEEeC-CCcEEEEeccCCCCcc
Q 001248 1034 NPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS-DGGVHVFEPLESEGKW 1084 (1114)
Q Consensus 1034 ~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~-Dg~v~vW~i~~~~~~~ 1084 (1114)
. ...+.+ ..|..+.++| |+++|+++.. +++|.+|++....+.+
T Consensus 267 ~--~~~~~~-----~~p~~~~~~~-dg~~l~va~~~~~~v~v~~~~~~~g~l 310 (330)
T PRK11028 267 E--GHQPTE-----TQPRGFNIDH-SGKYLIAAGQKSHHISVYEIDGETGLL 310 (330)
T ss_pred e--EEEecc-----ccCCceEECC-CCCEEEEEEccCCcEEEEEEcCCCCcE
Confidence 1 011112 2333688999 6788887665 8999999986544333
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-15 Score=153.32 Aligned_cols=168 Identities=16% Similarity=0.236 Sum_probs=124.9
Q ss_pred eeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCC------CcceeEee-ccccCEEEEeeccCCCceEEEEEecC
Q 001248 460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN------GAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALD 532 (1114)
Q Consensus 460 ~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~------~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d 532 (1114)
.+.+|.+.|+++.||.+++ +|++|+.|..+++|+++. .+++.... .|...|.+++|... ..++++|+.+
T Consensus 51 D~~~H~GCiNAlqFS~N~~--~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~--N~~~~SG~~~ 126 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDR--FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLE--NRFLYSGERW 126 (609)
T ss_pred hhhhhccccceeeeccCCe--EEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccC--CeeEecCCCc
Confidence 4678999999999999988 899999999999999863 45555443 35689999998543 3799999999
Q ss_pred CeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcc-eEEE
Q 001248 533 GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-LLTS 611 (1114)
Q Consensus 533 ~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~ 611 (1114)
++|..-|+++.+.+..+..... .+.+.-+..+|..+.|++.+.++.|.+||.+... .+..
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~~-------------------~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~ 187 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENNN-------------------RGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISL 187 (609)
T ss_pred ceeEeeecccceeeeeecccCc-------------------ccceeecccCCCCceEEEEecCceEEEEeccCCCCCCce
Confidence 9999999998665543322110 1244445566667789999999999999988755 3322
Q ss_pred eccCCCCCCcCeEEEcC-CCCEEEEEeCCCcEEEEEccCC
Q 001248 612 IDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 612 ~~~~~~~~~v~~~~~s~-d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
+-.........++.|+| .-.+|++.+..+.+.+||.+..
T Consensus 188 ~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~ 227 (609)
T KOG4227|consen 188 VLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQ 227 (609)
T ss_pred eeecCCCccceeeeecCCCceeEEeccccCCCCceeeccc
Confidence 22122223567899999 4567888888899999998755
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-16 Score=168.74 Aligned_cols=229 Identities=16% Similarity=0.279 Sum_probs=180.0
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEcc-----CCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCC
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYH-----GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK 489 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~-----~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~ 489 (1114)
.+..|.+.|++++|.|...-|++++.||++.+|++. ....+.++.+|.+|.++|.|++.++++. .+++|+.||
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg 366 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDG 366 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCc
Confidence 477899999999999999999999999999999993 3445678889999999999999999999 799999999
Q ss_pred CEEEEeCCC------C----cceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCC--CCeeE
Q 001248 490 TIKVWDATN------G----AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP--GRWCT 557 (1114)
Q Consensus 490 ~i~iwd~~~------~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~--~~~v~ 557 (1114)
+|+.|++.. . .....+.||.+.|+.++++..+ ..|++++.||+++.|+...... ..+... .....
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 999996542 1 2335788999999999988777 4799999999999998876555 222111 11111
Q ss_pred EEEEecCC--------C---------------eEEee------ecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcce
Q 001248 558 TMAYSADG--------T---------------RTYQG------FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL 608 (1114)
Q Consensus 558 ~~~~s~~g--------~---------------~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 608 (1114)
++.+.... + .++.. .....+..+..+|...+.+++.+|+.|+++|..+++.
T Consensus 444 svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~ 523 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKI 523 (577)
T ss_pred eEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccccc
Confidence 22111110 0 11110 1123566688889999999999999999999999999
Q ss_pred EEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 609 LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 609 ~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
+.....| ...++++++.|+|-+|++++.|+.+++|.+...
T Consensus 524 l~s~~a~--~~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 524 LHSMVAH--KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred chheeec--cceecceeecCCCceEEeecCCceeehhhccch
Confidence 9888766 457999999999999999999999999987655
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.7e-17 Score=178.98 Aligned_cols=282 Identities=17% Similarity=0.231 Sum_probs=204.7
Q ss_pred eeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEE
Q 001248 460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 539 (1114)
Q Consensus 460 ~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd 539 (1114)
.+.+|...|+|+.|...|. ++++|+.|..++||.++++.++.++.||.+.|+.++.+. +..++++++.|..|++|.
T Consensus 185 rLlgH~naVyca~fDrtg~--~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~--~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGR--YIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSS--NNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHhhhhheeeeeeccccc--eEeecCccceeeeeeccchhhhccCCCCccccchhccch--hhhhhhhcccCceEEEEe
Confidence 5789999999999999999 799999999999999999999999999999999999743 336899999999999999
Q ss_pred cCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccC---C
Q 001248 540 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD---G 616 (1114)
Q Consensus 540 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~ 616 (1114)
+..+.++..+.+|.+.|++++|+| ..+.+.||++++||.+-. .+...... .
T Consensus 261 l~~~~pvsvLrghtgavtaiafsP-------------------------~~sss~dgt~~~wd~r~~-~~~y~prp~~~~ 314 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTGAVTAIAFSP-------------------------RASSSDDGTCRIWDARLE-PRIYVPRPLKFT 314 (1113)
T ss_pred cCCCchHHHHhccccceeeeccCc-------------------------cccCCCCCceEecccccc-ccccCCCCCCcc
Confidence 999999999999999999999988 346788999999998711 11111000 0
Q ss_pred CCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccc
Q 001248 617 GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAA 696 (1114)
Q Consensus 617 ~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1114)
....+.++.|...+.-+++++.|+.-..|
T Consensus 315 ~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~--------------------------------------------------- 343 (1113)
T KOG0644|consen 315 EKDLVDSILFENNGDRFLTGSRDGEARNH--------------------------------------------------- 343 (1113)
T ss_pred cccceeeeeccccccccccccCCcccccc---------------------------------------------------
Confidence 00112222233333333333333332222
Q ss_pred cccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEE
Q 001248 697 SMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHL 776 (1114)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~ 776 (1114)
.... +++..++-.+++.
T Consensus 344 ---------------------------------e~~~-----------------------l~~~~~~lif~t~------- 360 (1113)
T KOG0644|consen 344 ---------------------------------EFEQ-----------------------LAWRSNLLIFVTR------- 360 (1113)
T ss_pred ---------------------------------hhhH-----------------------hhhhccceEEEec-------
Confidence 2110 0000000001110
Q ss_pred EEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCC-CEEEEEe-CCeEEEEEcCCCccccc
Q 001248 777 LWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND-SYVMSAS-GGKISLFNMMTFKTMAT 854 (1114)
Q Consensus 777 vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~-~~l~~~~-dg~i~iwd~~~~~~~~~ 854 (1114)
+.|- .+.+++- +-.+.+|++.+|...+.
T Consensus 361 --------------------------------------------------ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~ 390 (1113)
T KOG0644|consen 361 --------------------------------------------------SSDLSSIVVTARNDHRLCVWNLYTGQLLHN 390 (1113)
T ss_pred --------------------------------------------------cccccccceeeeeeeEeeeeecccchhhhh
Confidence 1011 2333333 67789999999999999
Q ss_pred cCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEee-cccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001248 855 FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 933 (1114)
Q Consensus 855 ~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l-~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~ 933 (1114)
+.+|...+..+.++|.+..+..+++.||...|||+-.|..++.. .+| ..+..-+||+||..++....-|.+.|.....
T Consensus 391 l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~g~gq 469 (1113)
T KOG0644|consen 391 LMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYILGTGQ 469 (1113)
T ss_pred hcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeeccc-ceeeccccCCCCceEecCCCCCceEEeccCC
Confidence 99999999999999988888889999999999999988766544 455 4566789999999999888889999987765
Q ss_pred Ccc
Q 001248 934 WEK 936 (1114)
Q Consensus 934 ~~~ 936 (1114)
++.
T Consensus 470 s~s 472 (1113)
T KOG0644|consen 470 SKS 472 (1113)
T ss_pred Ccc
Confidence 443
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-15 Score=152.24 Aligned_cols=319 Identities=8% Similarity=0.069 Sum_probs=204.6
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCC---ceeeeeEee-ccccCCeeEEEecCCCCeeEEEEecCCCC
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG---DEVRQHLEI-DAHVGGVNDIAFSHPNKQLCVITCGDDKT 490 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~---~~~~~~~~l-~~h~~~V~~v~~s~d~~~~~l~s~~~d~~ 490 (1114)
-+.+|.+.|+++.||.++++||+|+.|..+++|++..- +..+++... ..|...|.|++|...+. .+++|+.+++
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~--~~~SG~~~~~ 128 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR--FLYSGERWGT 128 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe--eEecCCCcce
Confidence 46789999999999999999999999999999998631 111111122 23567999999998777 7999999999
Q ss_pred EEEEeCCCCcceeEeec--cccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeE
Q 001248 491 IKVWDATNGAKQYIFEG--HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRT 568 (1114)
Q Consensus 491 i~iwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~ 568 (1114)
|...|+++.+.+..+.. ..+.|..+..+|.. +.+++.+.++.|.+||.+...... .-++....
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D--N~~~~~t~~~~V~~~D~Rd~~~~~---------~~~~~AN~---- 193 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTD--NTLIVVTRAKLVSFIDNRDRQNPI---------SLVLPANS---- 193 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCC--ceEEEEecCceEEEEeccCCCCCC---------ceeeecCC----
Confidence 99999999998887752 23589999887774 689999999999999998643211 11111111
Q ss_pred EeeecccceeEEEecCCC-CEEEEEeCCCeEEEEECCCcce-EEEecc----CCCCCCcCeEEEcCCCCEEEEEeCCCcE
Q 001248 569 YQGFRKRSLGVVQFDTTK-NRFLAAGDDFSIKFWDMDSVQL-LTSIDA----DGGLPASPRIRFNKDGCLLAVSTNDNGI 642 (1114)
Q Consensus 569 ~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~-~~~~~~----~~~~~~v~~~~~s~d~~~l~~~~~dg~i 642 (1114)
...+..+.|+|.. .++++.++.+-+-+||.+.... +..... ......-.++.|+|+|+.+.+--...--
T Consensus 194 -----~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P 268 (609)
T KOG4227|consen 194 -----GKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCP 268 (609)
T ss_pred -----CccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCC
Confidence 1234445566654 3566778889999999875431 111111 1111123578899999988876655555
Q ss_pred EEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccC
Q 001248 643 KILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEES 722 (1114)
Q Consensus 643 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 722 (1114)
.+||+.+....+..+. |...
T Consensus 269 ~~~D~~S~R~~V~k~D-~N~~----------------------------------------------------------- 288 (609)
T KOG4227|consen 269 LYFDFISQRCFVLKSD-HNPN----------------------------------------------------------- 288 (609)
T ss_pred EEeeeecccceeEecc-CCCC-----------------------------------------------------------
Confidence 5666655311111111 0000
Q ss_pred CCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccC----CCCCcccccccc
Q 001248 723 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERN----SSGKATASVAPQ 798 (1114)
Q Consensus 723 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~----~~~~~~~~~~~~ 798 (1114)
. ......+.+++|..|.. +++++.+=.|++|.+...... ..|.--...-..
T Consensus 289 ---------------G---------Y~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~ 343 (609)
T KOG4227|consen 289 ---------------G---------YCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSE 343 (609)
T ss_pred ---------------c---------ceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchh
Confidence 0 01234566777776665 778888888888887643211 111100000000
Q ss_pred ccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEc
Q 001248 799 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNM 846 (1114)
Q Consensus 799 ~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~ 846 (1114)
+ ...+.+. .+. +|.+-+..+.|+|...+|++.+ .+.++||.-
T Consensus 344 ~--~i~~~~~--VLr--GHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 344 I--FIEKELT--VLR--GHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred h--eecceeE--EEe--cccccccceeecCCcceEeccchhhheecccc
Confidence 0 0011111 123 4999999999999998888877 899999974
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.9e-16 Score=149.88 Aligned_cols=228 Identities=17% Similarity=0.200 Sum_probs=175.2
Q ss_pred CCeEEEEEcCCCc--c-ccccCCCCCCeEEEEEecCCCcEEEEEeCCC-------cEEEEEccc---------ceEEEee
Q 001248 838 GGKISLFNMMTFK--T-MATFMPPPPAATFLAFHPQDNNIIAIGMDDS-------SIQIYNVRV---------DEVKSKL 898 (1114)
Q Consensus 838 dg~i~iwd~~~~~--~-~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg-------~v~iwd~~~---------~~~~~~l 898 (1114)
|+.|.+.++.... . ...|..|.++|..++-+|.+.++|+++..+. .+-||.+.. .+++..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 5778888776432 2 2456778899999999998899999887532 467998753 2344555
Q ss_pred c-ccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEcc--CCcEEEEEeCCeE
Q 001248 899 K-GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ--DQIHFLVVHETQL 975 (1114)
Q Consensus 899 ~-~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fsp--dg~~l~~~~d~~i 975 (1114)
. .+-+.|.||.|.|++..|++-. |..|.+|+++.+............. ......++-+|+| ||+.+++..|+++
T Consensus 119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~--e~~~~ftsg~WspHHdgnqv~tt~d~tl 195 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESA--EMRHSFTSGAWSPHHDGNQVATTSDSTL 195 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccc--cccceecccccCCCCccceEEEeCCCcE
Confidence 4 4567899999999999999887 7889999999866532222211111 1123567788998 8999999999999
Q ss_pred EEEEcCCCceeeeeecCCCCcCeeEEEECCCCCE-EEEEEcCCeEEEEEcCCCe-eeEEeCCCcccCCCCCCCCccceEE
Q 001248 976 AIFETTKLECVKQWVPRESSAPITHATFSCDSQL-VYACFLDATVCVFSAANLK-LRCRINPSAYLPAGVSSSNVHPLVI 1053 (1114)
Q Consensus 976 ~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~-l~s~s~Dg~I~vwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~ 1053 (1114)
..||+++..+...+. ++|...|..+.|.|+-++ |++++.||.|++||.+..+ .+..+. + ++++|+ ++
T Consensus 196 ~~~D~RT~~~~~sI~-dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~-------~-HsHWvW--~V 264 (370)
T KOG1007|consen 196 QFWDLRTMKKNNSIE-DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP-------G-HSHWVW--AV 264 (370)
T ss_pred EEEEccchhhhcchh-hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC-------C-CceEEE--EE
Confidence 999999998877766 588999999999999886 7899999999999997654 333332 2 277788 89
Q ss_pred EecCCCCCeEEEEeCCCcEEEEeccC
Q 001248 1054 AAHPQEPNEFALGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1054 ~~~~~d~~~l~s~~~Dg~v~vW~i~~ 1079 (1114)
.|.|.-.++|++|+.|..|.+|....
T Consensus 265 Rfn~~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 265 RFNPEHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred EecCccceEEEecCCCceeEEEeccc
Confidence 99998788999999999999998744
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.3e-15 Score=155.97 Aligned_cols=207 Identities=16% Similarity=0.203 Sum_probs=153.7
Q ss_pred EEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCc
Q 001248 374 LLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD 453 (1114)
Q Consensus 374 l~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~ 453 (1114)
++..+.||.+.|-+-. ++... ....|.+.|.|-.|+|||.-|++++.||.|++|.-...
T Consensus 78 ~~i~s~DGkf~il~k~-~rVE~-------------------sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM- 136 (737)
T KOG1524|consen 78 LLICSNDGRFVILNKS-ARVER-------------------SISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM- 136 (737)
T ss_pred EEEEcCCceEEEeccc-chhhh-------------------hhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch-
Confidence 5566778888877633 22211 36789999999999999999999999999999986542
Q ss_pred eeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCC
Q 001248 454 EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDG 533 (1114)
Q Consensus 454 ~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~ 533 (1114)
++. ++-....+|+|++|.|++.. ++++.+ +.+.|=.+.....+-.++.|.+-|.++.|++.. +++++|+.|-
T Consensus 137 -LRS--tl~Q~~~~v~c~~W~p~S~~-vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s--~lI~sgGED~ 208 (737)
T KOG1524|consen 137 -LRS--TVVQNEESIRCARWAPNSNS-IVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQS--NIIASGGEDF 208 (737)
T ss_pred -HHH--HHhhcCceeEEEEECCCCCc-eEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccc--cceeecCCce
Confidence 221 34456779999999999986 444443 467676777777777889999999999998766 5999999999
Q ss_pred eEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEec
Q 001248 534 KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID 613 (1114)
Q Consensus 534 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 613 (1114)
..++||-. +..++.-..|..+|++++|.|+ + .++.++ -++++ +.
T Consensus 209 kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~---------------------~~~v~S-~nt~R------------~~ 252 (737)
T KOG1524|consen 209 RFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-K---------------------DYLLWS-YNTAR------------FS 252 (737)
T ss_pred eEEeeccc-CcccccCChhccceeeeeeccc-c---------------------ceeeee-eeeee------------ec
Confidence 99999975 3455566677778888888887 3 233333 23333 21
Q ss_pred cCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEE
Q 001248 614 ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA 646 (1114)
Q Consensus 614 ~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd 646 (1114)
. ...+.|..++||+||..+++|+..|.+.+-.
T Consensus 253 ~-p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 253 S-PRVGSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred C-CCccceEEEEEcCCCceeeccccCceEEEee
Confidence 1 1234688999999999999999988876543
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.3e-17 Score=178.44 Aligned_cols=268 Identities=19% Similarity=0.306 Sum_probs=187.6
Q ss_pred cceeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEE
Q 001248 349 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 428 (1114)
Q Consensus 349 ~~~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 428 (1114)
+.+.++++|...|.|+.|...|+| +++|+.|..|+||..+++.++. ...||.+.|+.++.
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~-Iitgsdd~lvKiwS~et~~~lA-------------------s~rGhs~ditdlav 240 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRY-IITGSDDRLVKIWSMETARCLA-------------------SCRGHSGDITDLAV 240 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccce-EeecCccceeeeeeccchhhhc-------------------cCCCCccccchhcc
Confidence 345677889999999999999997 9999999999999999998887 48999999999999
Q ss_pred cCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeE---e
Q 001248 429 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI---F 505 (1114)
Q Consensus 429 spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~---~ 505 (1114)
+.+..++|+++.|..|++|.+.++..+. .+.||++.|++++|+|- .+.+.||++++||.+-.-.+.. +
T Consensus 241 s~~n~~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~ 311 (1113)
T KOG0644|consen 241 SSNNTMIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPL 311 (1113)
T ss_pred chhhhhhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCC
Confidence 9999999999999999999999998776 78999999999999984 4778999999999871111111 0
Q ss_pred ec-cccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCe---eeecCCC-----------CeeEEEEEe-cCCC--e
Q 001248 506 EG-HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR---VDYEAPG-----------RWCTTMAYS-ADGT--R 567 (1114)
Q Consensus 506 ~~-h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~---~~~~~~~-----------~~v~~~~~s-~~g~--~ 567 (1114)
+. ....+.++.| ..++.-+.+++.|+.-..|...-.... ..+.... ..+....|. .+|. .
T Consensus 312 ~~~~~~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H 389 (1113)
T KOG0644|consen 312 KFTEKDLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLH 389 (1113)
T ss_pred Ccccccceeeeec--cccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhh
Confidence 00 1122222322 233445666666666555544321110 0000000 011111111 1110 1
Q ss_pred EEeeecccceeEEEecCCCCE-EEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEE
Q 001248 568 TYQGFRKRSLGVVQFDTTKNR-FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA 646 (1114)
Q Consensus 568 ~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd 646 (1114)
...+| ...+.++.++|.... ..+++.||...|||+..|.+++.+... + ..+....||+||..++....-|.+.|..
T Consensus 390 ~l~gh-sd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g-h-~kl~d~kFSqdgts~~lsd~hgql~i~g 466 (1113)
T KOG0644|consen 390 NLMGH-SDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-H-GKLVDGKFSQDGTSIALSDDHGQLYILG 466 (1113)
T ss_pred hhccc-ccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc-c-ceeeccccCCCCceEecCCCCCceEEec
Confidence 12222 235666777776544 456889999999999999888777532 2 3577889999999999988889999987
Q ss_pred ccCC
Q 001248 647 TSDG 650 (1114)
Q Consensus 647 ~~~~ 650 (1114)
...+
T Consensus 467 ~gqs 470 (1113)
T KOG0644|consen 467 TGQS 470 (1113)
T ss_pred cCCC
Confidence 6554
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-14 Score=144.45 Aligned_cols=260 Identities=13% Similarity=0.140 Sum_probs=167.7
Q ss_pred CCCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCC---CCCCeEEEEEecCCCcEEEEEe--CCCcEEEEEccc
Q 001248 817 PEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMP---PPPAATFLAFHPQDNNIIAIGM--DDSSIQIYNVRV 891 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~---~~~~i~~l~~sp~d~~~la~g~--~dg~v~iwd~~~ 891 (1114)
....|.++.+ +-++|++.-.+.|+|||+++.+.+.++.. +...+.++++++ ++.+||.-+ ..|.|.+||+.+
T Consensus 86 fpt~IL~Vrm--Nr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~-~n~ylAyp~s~t~GdV~l~d~~n 162 (391)
T KOG2110|consen 86 FPTSILAVRM--NRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNN-ANCYLAYPGSTTSGDVVLFDTIN 162 (391)
T ss_pred cCCceEEEEE--ccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCC-CCceEEecCCCCCceEEEEEccc
Confidence 4566777776 45577777777799999999999888754 344566666666 667888643 568999999999
Q ss_pred ceEEEeecccccCeeEEEEcCCCCEEEEEeCCCc-EEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-
Q 001248 892 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ-LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV- 969 (1114)
Q Consensus 892 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~- 969 (1114)
-+.+..+..|.+++.+++|+++|.+||++|+-|+ |||+.+.++++. .....|-. ...|.+++|+||+.+|++
T Consensus 163 l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl----~eFRRG~~--~~~IySL~Fs~ds~~L~~s 236 (391)
T KOG2110|consen 163 LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKL----YEFRRGTY--PVSIYSLSFSPDSQFLAAS 236 (391)
T ss_pred ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEe----eeeeCCce--eeEEEEEEECCCCCeEEEe
Confidence 9999999999999999999999999999999998 689999887652 33333433 257899999999999999
Q ss_pred EeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCc
Q 001248 970 VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNV 1048 (1114)
Q Consensus 970 ~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s-~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v 1048 (1114)
+..++|.+|.+.+...-..-. .....-..-.++ +. +++- -.+.-.+||....-.-.++. .. ..-
T Consensus 237 S~TeTVHiFKL~~~~~~~~~~--p~~~~~~~~~~s---k~-~~sylps~V~~~~~~~R~FAt~~l~------~s---~~~ 301 (391)
T KOG2110|consen 237 SNTETVHIFKLEKVSNNPPES--PTAGTSWFGKVS---KA-ATSYLPSQVSSVLDQSRKFATAKLP------ES---GRK 301 (391)
T ss_pred cCCCeEEEEEecccccCCCCC--CCCCCcccchhh---hh-hhhhcchhhhhhhhhccceeEEEcc------CC---Ccc
Confidence 678899999987654211100 000000000011 00 0010 01122235543322222222 11 101
Q ss_pred cceEEEecC-CCCCeEEEEeCCCcEEEEeccCCC--CcccCCCCCCCCCCCCCCCCC
Q 001248 1049 HPLVIAAHP-QEPNEFALGLSDGGVHVFEPLESE--GKWGVPPPVDNGSTSSMPATP 1102 (1114)
Q Consensus 1049 ~~~~~~~~~-~d~~~l~s~~~Dg~v~vW~i~~~~--~~~~~~~~~~~~~~~~~~~~~ 1102 (1114)
. .+++.+ +...++.+++.||.++.+.++-.+ +.+-+.+-+-.+++....+++
T Consensus 302 ~--~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~gGec~lik~h~~~~~~~t~~a~~ 356 (391)
T KOG2110|consen 302 N--ICSLSSIQKIPRVLVASYDGHLYSYRLPPKEGGECALIKRHFLDGSIDTSAASG 356 (391)
T ss_pred c--eEEeeccCCCCEEEEEEcCCeEEEEEcCCCCCceeEEEEeeccCCccccccccc
Confidence 1 223332 256789999999999999997643 444444444555555544443
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.6e-16 Score=166.13 Aligned_cols=250 Identities=15% Similarity=0.203 Sum_probs=184.3
Q ss_pred CCCCccEEEEeeCCCEEEEEe-CCeEEEEEcC--------CCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 001248 817 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMM--------TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY 887 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~--------~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iw 887 (1114)
|...|+.++|.+-...|++++ ||+|++|+++ ..+++.+|.+|.++|.|+++.+ ++..+.+|+.||+|+.|
T Consensus 293 ~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~-n~~~~ysgg~Dg~I~~w 371 (577)
T KOG0642|consen 293 HDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS-NGEHCYSGGIDGTIRCW 371 (577)
T ss_pred chhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC-CceEEEeeccCceeeee
Confidence 888899999999999999999 9999999993 2345778999999999999999 99999999999999999
Q ss_pred Ecccc----------eEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceE
Q 001248 888 NVRVD----------EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTR 957 (1114)
Q Consensus 888 d~~~~----------~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 957 (1114)
++... .+...+.||.+.|+.+++|+....|++++.||++++|+...... ........+ +....
T Consensus 372 ~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~---~~f~~~~e~----g~Pls 444 (577)
T KOG0642|consen 372 NLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP---CTFGEPKEH----GYPLS 444 (577)
T ss_pred ccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc---cccCCcccc----CCcce
Confidence 65421 24467889999999999999999999999999999999877443 111111111 12345
Q ss_pred EEEccCC-cEEEE-EeCCeEEEEEcCCCceeeeeecCCC-----CcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeee
Q 001248 958 VQFHQDQ-IHFLV-VHETQLAIFETTKLECVKQWVPRES-----SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR 1030 (1114)
Q Consensus 958 v~fspdg-~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h-----~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~ 1030 (1114)
+.|.... ...++ ..-+.--+++......+..+....- ...+..+.+.|.+.+.+++-.|+.|+++|..+++++
T Consensus 445 vd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l 524 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKIL 524 (577)
T ss_pred EeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccc
Confidence 5544332 11111 2223333444444444444332111 234677888899999999999999999999999998
Q ss_pred EEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCCCccc
Q 001248 1031 CRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWG 1085 (1114)
Q Consensus 1031 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~~~~~ 1085 (1114)
.... .+.+...++++.| +|-+|++|+.||.+++|++......++
T Consensus 525 ~s~~----------a~~~svtslai~~-ng~~l~s~s~d~sv~l~kld~k~~~~e 568 (577)
T KOG0642|consen 525 HSMV----------AHKDSVTSLAIDP-NGPYLMSGSHDGSVRLWKLDVKTCVLE 568 (577)
T ss_pred hhee----------eccceecceeecC-CCceEEeecCCceeehhhccchheeec
Confidence 7554 1123344888988 688999999999999999977664443
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5e-15 Score=166.73 Aligned_cols=195 Identities=18% Similarity=0.211 Sum_probs=144.8
Q ss_pred CCEEEEEeCCeEEEEEcCCCccccccCC-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc---eEEEeecccccC-
Q 001248 830 DSYVMSASGGKISLFNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD---EVKSKLKGHSKR- 904 (1114)
Q Consensus 830 ~~~l~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~---~~~~~l~~h~~~- 904 (1114)
|.++++|.-..|+|||+........+.. ....|+++.-+...|+++|+|..||.|++||.... ..+...+.|++.
T Consensus 1178 G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~ 1257 (1387)
T KOG1517|consen 1178 GHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVE 1257 (1387)
T ss_pred CeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcc
Confidence 4444444457899999987766666543 34457777766556899999999999999998753 456778889888
Q ss_pred -eeEEEEcCCCCE-EEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCC
Q 001248 905 -ITGLAFSHALNV-LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTK 982 (1114)
Q Consensus 905 -V~~l~~s~d~~~-l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~ 982 (1114)
|..+.+-+.|-- |+||+.||.|++||+....... ...... +..-.+..+++..+++...+|+|+.+.|+||++..
T Consensus 1258 ~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~--~~~iv~-~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1258 PIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET--FLTIVA-HWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSG 1334 (1387)
T ss_pred cceeEEeecCCCcceeeeccCCeEEEEecccCcccc--cceeee-ccccCccceeeeeccCCCeeeecCcceEEEEecCh
Confidence 999999887654 9999999999999998742222 222211 11111247999999999999998779999999874
Q ss_pred CceeeeeecC-----CCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCe
Q 001248 983 LECVKQWVPR-----ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1028 (1114)
Q Consensus 983 ~~~~~~~~~~-----~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~ 1028 (1114)
+.+..+... ...+.+.|++|.|-.-+||+|+.|.+|.||.....+
T Consensus 1335 -~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1335 -EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred -hhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 333333211 124578999999999999999999999999877654
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.2e-16 Score=160.57 Aligned_cols=322 Identities=16% Similarity=0.206 Sum_probs=231.4
Q ss_pred eeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEe-eccccCEEEEeeccCCCceEEEEEecCCeEEEE
Q 001248 460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 538 (1114)
Q Consensus 460 ~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~w 538 (1114)
.|.+|.+.|+.|.|...|. .+++|+.|..|.+||+..++....+ .||...|....|.|..+...+++++.||.+++=
T Consensus 137 kL~~H~GcVntV~FN~~Gd--~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGD--VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred cccCCCCccceeeecccCc--eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 5889999999999999999 8999999999999999999887666 579988888888888777899999999999988
Q ss_pred EcCCCCCee---eecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccC
Q 001248 539 LYDNLGSRV---DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD 615 (1114)
Q Consensus 539 d~~~~~~~~---~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 615 (1114)
.+...+... .+..|.+.|..++.-|+.. .-|+++++|+.+.-+|++.+.....+...
T Consensus 215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp--------------------~~f~S~geD~~v~~~Dlr~~~pa~~~~cr 274 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHEGPVHKLAVEPDSP--------------------KPFLSCGEDAVVFHIDLRQDVPAEKFVCR 274 (559)
T ss_pred eeccccceecceecccccCccceeeecCCCC--------------------CcccccccccceeeeeeccCCccceeeee
Confidence 766544332 4455666777777777655 34889999999999999887655544322
Q ss_pred CC-C---CCcCeEEEcCCC-CEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccc
Q 001248 616 GG-L---PASPRIRFNKDG-CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAG 690 (1114)
Q Consensus 616 ~~-~---~~v~~~~~s~d~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1114)
.. . .....++..|.. ..+++++.|..+++||.+.-.+.- ..+ .+. .|.+..
T Consensus 275 ~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~--~n~---~~~--------~f~p~h----------- 330 (559)
T KOG1334|consen 275 EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEE--NNG---VLD--------KFCPHH----------- 330 (559)
T ss_pred ccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhcc--ccc---hhh--------hcCCcc-----------
Confidence 11 1 245688888844 589999999999999876431110 000 000 011000
Q ss_pred cccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecc
Q 001248 691 LADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALA 770 (1114)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~ 770 (1114)
++ ......|++++|+.++.-++++.
T Consensus 331 --------------------------l~-----------------------------~d~~v~ITgl~Ysh~~sElLaSY 355 (559)
T KOG1334|consen 331 --------------------------LV-----------------------------EDDPVNITGLVYSHDGSELLASY 355 (559)
T ss_pred --------------------------cc-----------------------------ccCcccceeEEecCCccceeeee
Confidence 00 01345789999999988899999
Q ss_pred cCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEE-eeCCCEEEEEeC-CeEEEEEcCC
Q 001248 771 SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL-SKNDSYVMSASG-GKISLFNMMT 848 (1114)
Q Consensus 771 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~-s~d~~~l~~~~d-g~i~iwd~~~ 848 (1114)
.|-.|+++.-..+.- .......++ .......+++......|..+-| -|...|+++|+| |.|.||+-.+
T Consensus 356 nDe~IYLF~~~~~~G----~~p~~~s~~------~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t 425 (559)
T KOG1334|consen 356 NDEDIYLFNKSMGDG----SEPDPSSPR------EQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKT 425 (559)
T ss_pred cccceEEeccccccC----CCCCCCcch------hhccchhhcccccccccceeeeccCccceEEecCccceEEEEecch
Confidence 998999885332211 000000000 1122222444334455777765 578899999996 9999999999
Q ss_pred CccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccce
Q 001248 849 FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE 893 (1114)
Q Consensus 849 ~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~ 893 (1114)
++.++.+.+...-|.|+.-+| ---+||+.+-|.-|+||...+.+
T Consensus 426 ~eii~~MegDr~VVNCLEpHP-~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 426 GEIIRFMEGDRHVVNCLEPHP-HLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred hHHHHHhhcccceEeccCCCC-CCchhhccCCccceeeecCCccc
Confidence 999999988777899999998 66799999999999999875443
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.9e-15 Score=166.95 Aligned_cols=260 Identities=20% Similarity=0.264 Sum_probs=190.1
Q ss_pred EeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCC
Q 001248 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1114)
..+.-...|+|++|+|....++|.|..+|.|.+||+..+..... .........|..+|+.+.|-.+-
T Consensus 237 ~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~-------------s~ls~~~~sh~~~v~~vvW~~~~ 303 (555)
T KOG1587|consen 237 LVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP-------------SGLSALEVSHSEPVTAVVWLQNE 303 (555)
T ss_pred EEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC-------------cccccccccCCcCeEEEEEeccC
Confidence 56667899999999999988999999999999999988765210 00111356899999999998754
Q ss_pred Ce--EEEEeCCCeEEEEEccCCceeeeeEeec---------cccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCC---C
Q 001248 433 SL--FGVAYSRHIVQIYSYHGGDEVRQHLEID---------AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT---N 498 (1114)
Q Consensus 433 ~~--las~~~dg~i~iwd~~~~~~~~~~~~l~---------~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~---~ 498 (1114)
.- +++++.||.|..|+++.-........+. .-...+++++|.+.... .++.|+.+|.|..-+-. .
T Consensus 304 ~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~G~v~~~~r~g~~~ 382 (555)
T KOG1587|consen 304 HNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEEGKVYKGCRKGYTP 382 (555)
T ss_pred CCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCCcEEEEEeccCCcc
Confidence 44 9999999999999876432211110111 12236899999998777 68999999998773322 2
Q ss_pred Cc-----ceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcC-CCCCeeeecCCCCeeEEEEEecCCCeEEeee
Q 001248 499 GA-----KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD-NLGSRVDYEAPGRWCTTMAYSADGTRTYQGF 572 (1114)
Q Consensus 499 ~~-----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~ 572 (1114)
+. .+..+..|.++|.++.+++-.. ..+.+++ |.++++|.-. ...++..+..+...+.+++|||-..
T Consensus 383 ~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrp------ 454 (555)
T KOG1587|consen 383 APEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRP------ 454 (555)
T ss_pred cccccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCc------
Confidence 22 1335567889999999876554 3444554 9999999887 5566666776777788888888654
Q ss_pred cccceeEEEecCCCCEEEEEeCCCeEEEEECCCcc--eEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 573 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ--LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 573 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
..|+++..+|.|.+||+.... ++.+.... ....+.+.|++.|+.|++|...|.+.+|++...
T Consensus 455 --------------avF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 455 --------------AVFATVDGDGNLDIWDLLQDDEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred --------------eEEEEEcCCCceehhhhhccccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 247888899999999986543 33333333 345678889999999999999999999998644
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-14 Score=136.85 Aligned_cols=254 Identities=15% Similarity=0.201 Sum_probs=172.2
Q ss_pred CceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEe
Q 001248 360 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY 439 (1114)
Q Consensus 360 ~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 439 (1114)
.|.+-++||.+++ |++|..+|+|.+..+.+-..-.. ............+|.++|..++|. ..+|++|+
T Consensus 12 tvf~qa~sp~~~~-l~agn~~G~iav~sl~sl~s~sa---------~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g 79 (325)
T KOG0649|consen 12 TVFAQAISPSKQY-LFAGNLFGDIAVLSLKSLDSGSA---------EPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG 79 (325)
T ss_pred HHHHHhhCCcceE-EEEecCCCeEEEEEehhhhcccc---------CCCCCcceeeccccCCCeeeeeee--hhheeecc
Confidence 3556689999996 99999999999999865221110 001111111357999999999998 55777775
Q ss_pred CCCeEEEEEccCCce-e--eeeEe--ecccc-----CCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccc
Q 001248 440 SRHIVQIYSYHGGDE-V--RQHLE--IDAHV-----GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE 509 (1114)
Q Consensus 440 ~dg~i~iwd~~~~~~-~--~~~~~--l~~h~-----~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~ 509 (1114)
||.|+=|.+..... . +...+ ..-|. ..|++|-..|..+. ++.++.|+.++-||+++|+..++++||+
T Consensus 80 -dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS--i~~AgGD~~~y~~dlE~G~i~r~~rGHt 156 (325)
T KOG0649|consen 80 -DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS--ILFAGGDGVIYQVDLEDGRIQREYRGHT 156 (325)
T ss_pred -CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc--EEEecCCeEEEEEEecCCEEEEEEcCCc
Confidence 59999998764322 0 00000 11122 35899999988773 5666689999999999999999999999
Q ss_pred cCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEE
Q 001248 510 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 589 (1114)
Q Consensus 510 ~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l 589 (1114)
+.|.++.--. ....+++|+.||++++||.++.+....+..-... ..+..+-..-+.++ .-+..++
T Consensus 157 DYvH~vv~R~--~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~-----------~~lRp~~g~wigal--a~~edWl 221 (325)
T KOG0649|consen 157 DYVHSVVGRN--ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNP-----------NLLRPDWGKWIGAL--AVNEDWL 221 (325)
T ss_pred ceeeeeeecc--cCcceeecCCCccEEEEeccccceeEEeccccCh-----------hhcCcccCceeEEE--eccCceE
Confidence 9999998422 2257999999999999999998776654322110 00111111122222 2333467
Q ss_pred EEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccC
Q 001248 590 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 649 (1114)
Q Consensus 590 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~ 649 (1114)
++|+ ...+.+|+++..++...+....+ +..+.|. .+.+++++..+.+.-|.+..
T Consensus 222 vCGg-Gp~lslwhLrsse~t~vfpipa~---v~~v~F~--~d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 222 VCGG-GPKLSLWHLRSSESTCVFPIPAR---VHLVDFV--DDCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred EecC-CCceeEEeccCCCceEEEecccc---eeEeeee--cceEEEeccccceeeeeecc
Confidence 6655 46789999999999888877654 6667775 45677788777888887643
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-15 Score=157.17 Aligned_cols=306 Identities=11% Similarity=0.152 Sum_probs=223.1
Q ss_pred cCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC--CCC
Q 001248 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGS 433 (1114)
Q Consensus 356 ~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~ 433 (1114)
+|.+-|..|.|...|. +|++|+.|..|.+||+..++.... ...||...|..-.|-| +.+
T Consensus 140 ~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~------------------f~SGH~~NvfQaKFiP~s~d~ 200 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLS------------------FESGHCNNVFQAKFIPFSGDR 200 (559)
T ss_pred CCCCccceeeecccCc-eeeccCccceEEeehhhccCcccc------------------cccccccchhhhhccCCCCCc
Confidence 4999999999999999 599999999999999998876653 4678988888888888 567
Q ss_pred eEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEe---ecccc
Q 001248 434 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF---EGHEA 510 (1114)
Q Consensus 434 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~~h~~ 510 (1114)
.+++++.||.|++=.+.....+.....+..|.++|.-++.-|+..+ -|.+++.|+.+.-.|+..+.....+ ..+..
T Consensus 201 ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~ 279 (559)
T KOG1334|consen 201 TIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFVCREADEK 279 (559)
T ss_pred CceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceeeeeccCCc
Confidence 8999999999999887655445444567889999999999999887 7999999999999999887654433 22333
Q ss_pred ---CEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCC
Q 001248 511 ---PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 587 (1114)
Q Consensus 511 ---~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~ 587 (1114)
...+++..|... ..+++++.|..+++||.+.......-. .+. .|.|. .+.....-.|+++.++.++.
T Consensus 280 ~~v~L~~Ia~~P~nt-~~faVgG~dqf~RvYD~R~~~~e~~n~----~~~--~f~p~---hl~~d~~v~ITgl~Ysh~~s 349 (559)
T KOG1334|consen 280 ERVGLYTIAVDPRNT-NEFAVGGSDQFARVYDQRRIDKEENNG----VLD--KFCPH---HLVEDDPVNITGLVYSHDGS 349 (559)
T ss_pred cceeeeeEecCCCCc-cccccCChhhhhhhhcccchhhccccc----hhh--hcCCc---cccccCcccceeEEecCCcc
Confidence 356667666543 589999999999999987533221000 000 11111 11112223566777776666
Q ss_pred EEEEEeCCCeEEEEECCC--c----------ceEEE-eccCCCCCCcCeEEE-cCCCCEEEEEeCCCcEEEEEccCCccc
Q 001248 588 RFLAAGDDFSIKFWDMDS--V----------QLLTS-IDADGGLPASPRIRF-NKDGCLLAVSTNDNGIKILATSDGIRL 653 (1114)
Q Consensus 588 ~l~~~~~dg~i~iwd~~~--~----------~~~~~-~~~~~~~~~v~~~~~-s~d~~~l~~~~~dg~i~iwd~~~~~~~ 653 (1114)
.+++...|-.|++++..- | ..+.. +++|.....|..+-| .|...++++|+.-|.|.||+-.++ +.
T Consensus 350 ElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~-ei 428 (559)
T KOG1334|consen 350 ELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG-EI 428 (559)
T ss_pred ceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh-HH
Confidence 788888888999996432 2 22233 667766667777775 568899999999999999998888 67
Q ss_pred eeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEecc
Q 001248 654 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 733 (1114)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~ 733 (1114)
++.+++....+.+ ....|--..|++.+.|..|+||....
T Consensus 429 i~~MegDr~VVNC-----------------------------------------LEpHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 429 IRFMEGDRHVVNC-----------------------------------------LEPHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred HHHhhcccceEec-----------------------------------------cCCCCCCchhhccCCccceeeecCCc
Confidence 7777665443221 11224456789999999999998643
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.7e-14 Score=160.23 Aligned_cols=285 Identities=15% Similarity=0.157 Sum_probs=191.8
Q ss_pred CeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcc--eeE----eeccccCEEEE
Q 001248 442 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK--QYI----FEGHEAPVYSV 515 (1114)
Q Consensus 442 g~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~--~~~----~~~h~~~v~~~ 515 (1114)
+.+.||+++...... ..+ .-...|.++.|+|.... +++.|..+|.|.+||++.+.. ... ...|..++..+
T Consensus 222 ~~~~vW~~~~p~~Pe--~~~-~~~s~v~~~~f~p~~p~-ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~v 297 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPE--LVL-ESPSEVTCLKFCPFDPN-LLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAV 297 (555)
T ss_pred ceEEEEecCCCCCce--EEE-ecCCceeEEEeccCCcc-eEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEE
Confidence 479999998763222 123 34568999999999887 789999999999999987765 222 23588889988
Q ss_pred eeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCC
Q 001248 516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 595 (1114)
Q Consensus 516 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 595 (1114)
.|..+..+.-+++++.||.|..|+++......... .....
T Consensus 298 vW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~---------------------------------------~~~~~- 337 (555)
T KOG1587|consen 298 VWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGL---------------------------------------LLESK- 337 (555)
T ss_pred EEeccCCCCceEEEecCCcEeeeeccccccchhhc---------------------------------------ccccc-
Confidence 88776655568888888888888765422211000 00000
Q ss_pred CeEEEEECCCcceEEEeccCCCCCCcCeEEEcC-CCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCC
Q 001248 596 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 674 (1114)
Q Consensus 596 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (1114)
...+ ... .....+++++|.+ +-..+++|+++|.|.--.-........
T Consensus 338 -------~~~~---~~~---~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~------------------- 385 (555)
T KOG1587|consen 338 -------KHKG---QQS---SKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE------------------- 385 (555)
T ss_pred -------cccc---ccc---ccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc-------------------
Confidence 0000 000 1123467888887 567788899999876532211100000
Q ss_pred ccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccce
Q 001248 675 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 754 (1114)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i 754 (1114)
T Consensus 386 -------------------------------------------------------------------------------- 385 (555)
T KOG1587|consen 386 -------------------------------------------------------------------------------- 385 (555)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCE-E
Q 001248 755 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY-V 833 (1114)
Q Consensus 755 ~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~-l 833 (1114)
+.|.+... . ..|.++|+++.++|=+.. +
T Consensus 386 --~~~~~~~~-----------------------------------------------~--~~h~g~v~~v~~nPF~~k~f 414 (555)
T KOG1587|consen 386 --VSYKGHST-----------------------------------------------F--ITHIGPVYAVSRNPFYPKNF 414 (555)
T ss_pred --cccccccc-----------------------------------------------c--cccCcceEeeecCCCcccee
Confidence 00000000 0 016666777777775543 4
Q ss_pred EEEeCCeEEEEEcC-CCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc--eEEEeecccccCeeEEEE
Q 001248 834 MSASGGKISLFNMM-TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD--EVKSKLKGHSKRITGLAF 910 (1114)
Q Consensus 834 ~~~~dg~i~iwd~~-~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~--~~~~~l~~h~~~V~~l~~ 910 (1114)
.+++|-+++||... ...++..+..+...+++++|||.....+|++..||.|.+||+... ..+.+..-+....+.+.|
T Consensus 415 ls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~ 494 (555)
T KOG1587|consen 415 LSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRW 494 (555)
T ss_pred eeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeec
Confidence 44448889999887 666667777777889999999977889999999999999999753 344455445667788899
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCC
Q 001248 911 SHALNVLVSSGADSQLCVWSSDG 933 (1114)
Q Consensus 911 s~d~~~l~s~s~D~~v~iwd~~~ 933 (1114)
+++|+.|+.|+..|++.+|++..
T Consensus 495 s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 495 SPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred CCCCcEEEEecCCCcEEEEEcCc
Confidence 99999999999999999999964
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.9e-17 Score=176.20 Aligned_cols=301 Identities=19% Similarity=0.225 Sum_probs=207.2
Q ss_pred hhHHHHHHHHhHHHHHhhccCCCCCCCCcCcccccccCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001248 168 NSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVP 247 (1114)
Q Consensus 168 ~~rL~~ll~qa~~~Q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1114)
+-.|..|+.|++++|+.+|++|.++++.+|||..|+|+.+ .+
T Consensus 1012 ~~sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPEp-------------------------------k~------- 1053 (1516)
T KOG1832|consen 1012 RLSLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPEP-------------------------------KR------- 1053 (1516)
T ss_pred CCcHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCCh-------------------------------HH-------
Confidence 4479999999999999999999999999999999999981 00
Q ss_pred CcccccccCCCCCcCCCcccCccCCCCCCCccccccCCCCCCCCCcccCCCCChhhhhcccCCCCCccccccCccccccc
Q 001248 248 TPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVS 327 (1114)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~ 327 (1114)
....|-|...+.-+....+....++....+.+++-.|++. |
T Consensus 1054 -----------------------~~~ap~N~t~Rl~~rel~~~y~gV~g~~~dr~~IFSRFr~-------------w--- 1094 (1516)
T KOG1832|consen 1054 -----------------------LLEAPLNMTGRLGTRELQSFYSGVHGNRRDRQFIFSRFRS-------------W--- 1094 (1516)
T ss_pred -----------------------HhhcchhhhhcccchhhcCcccccccCcccchhhHhhccc-------------c---
Confidence 0111122223333333444455667777777777666652 1
Q ss_pred ccCCCCcCCCCcCCCCCCCCCcceeEec-cCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCC
Q 001248 328 FTGHSHSHSHSQAFSTPEDLPKTVTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGA 406 (1114)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~ 406 (1114)
+.+ .|+..-+|++||-+.++ |+.|+..|.|+++++.+|....
T Consensus 1095 -------------------------~~frd~~~~fTc~afs~~~~h-L~vG~~~Geik~~nv~sG~~e~----------- 1137 (1516)
T KOG1832|consen 1095 -------------------------RSFRDETALFTCIAFSGGTNH-LAVGSHAGEIKIFNVSSGSMEE----------- 1137 (1516)
T ss_pred -------------------------hhhhccccceeeEEeecCCce-EEeeeccceEEEEEccCccccc-----------
Confidence 223 37788999999999996 9999999999999999997765
Q ss_pred CCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCC--eEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEE
Q 001248 407 CSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVIT 484 (1114)
Q Consensus 407 ~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg--~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s 484 (1114)
....|..+|+.+.=|.||..+++.+... ...+|+...- .....++. .-.++.|+..... -+.
T Consensus 1138 --------s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~--~~~~Hsf~----ed~~vkFsn~~q~--r~~ 1201 (1516)
T KOG1832|consen 1138 --------SVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST--GGPRHSFD----EDKAVKFSNSLQF--RAL 1201 (1516)
T ss_pred --------cccccccccccccccCCcceeeeeccccCchHHHhccccc--cCcccccc----ccceeehhhhHHH--HHh
Confidence 3678999999999999999988775543 4679998752 22222343 3458899877553 233
Q ss_pred ecCCCCEEEEeCCCCcceeEe-ec---cccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEE
Q 001248 485 CGDDKTIKVWDATNGAKQYIF-EG---HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMA 560 (1114)
Q Consensus 485 ~~~d~~i~iwd~~~~~~~~~~-~~---h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~ 560 (1114)
|..-..+.+||++++..+.++ .+ ....-+...|+| +..+++- || .+||++..+.+..+..-..
T Consensus 1202 gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP--~D~LIln---dG--vLWDvR~~~aIh~FD~ft~------ 1268 (1516)
T KOG1832|consen 1202 GTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSP--CDTLILN---DG--VLWDVRIPEAIHRFDQFTD------ 1268 (1516)
T ss_pred cccccceEEEecccCcHHHHhcCcchhhhhhccccccCC--CcceEee---Cc--eeeeeccHHHHhhhhhhee------
Confidence 333456889999999887763 22 111224444544 4345553 33 6899988766554432211
Q ss_pred EecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEE
Q 001248 561 YSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS 636 (1114)
Q Consensus 561 ~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 636 (1114)
.-. -.|+|.|+.++.-++ |||+++.+.+.....-.. ..+.|+..|..++..
T Consensus 1269 -~~~---------------G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ldq----c~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1269 -YGG---------------GGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLDQ----CAVTFNSTGDVMYAM 1319 (1516)
T ss_pred -ccc---------------ccccCCCceEEeech-----hhhhHHHHHHhcCccccc----eEEEeccCccchhhh
Confidence 001 137778888888776 999999998887765433 578898888876643
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-15 Score=154.83 Aligned_cols=198 Identities=16% Similarity=0.170 Sum_probs=159.5
Q ss_pred cEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecc
Q 001248 822 PCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG 900 (1114)
Q Consensus 822 ~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~ 900 (1114)
.+++|+.+|..+++++ ||++|||+..+...+.....|..+|.++.|+| ||++||+-+.| ..+||++.+|..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899999999999998 99999999888888888888999999999999 99999999999 999999999976666543
Q ss_pred --cccCeeEEEEcCCC-----CEEEEEeCCCcEEEEeCCCCcccccccc-ccCCCCCCCCCCceEEEEccCCcEEEE-Ee
Q 001248 901 --HSKRITGLAFSHAL-----NVLVSSGADSQLCVWSSDGWEKQKNRFL-QIPTGRTPTAQSDTRVQFHQDQIHFLV-VH 971 (1114)
Q Consensus 901 --h~~~V~~l~~s~d~-----~~l~s~s~D~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~i~~v~fspdg~~l~~-~~ 971 (1114)
-......+-|+.|+ ...++...-+.|+.|++..+........ +....+ ..|++++.|+||+++|. +.
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~----~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF----KSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc----CcceeEEEcCCCcEEEEecc
Confidence 22335667788877 3444555567788888766443211111 111111 36899999999999999 58
Q ss_pred CCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCC
Q 001248 972 ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1026 (1114)
Q Consensus 972 d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~ 1026 (1114)
||.|.|++..+.+++.... +.|..-|+.+.|+||.+++++.+.|..+.|..+.-
T Consensus 302 dGsVai~~~~~lq~~~~vk-~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVK-EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CCcEEEEEeceeeeeEeeh-hhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999999999998887654 68999999999999999999999999998887654
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-14 Score=139.27 Aligned_cols=246 Identities=15% Similarity=0.203 Sum_probs=177.8
Q ss_pred CCCCCccEEEEeeCCC----EEEEEeCCeEEEEEcCC--Ccc--cccc-----CCCCCCeEEEEEecCCCcEEEEEeCCC
Q 001248 816 NPEEAVPCFALSKNDS----YVMSASGGKISLFNMMT--FKT--MATF-----MPPPPAATFLAFHPQDNNIIAIGMDDS 882 (1114)
Q Consensus 816 ~~~~~v~~v~~s~d~~----~l~~~~dg~i~iwd~~~--~~~--~~~~-----~~~~~~i~~l~~sp~d~~~la~g~~dg 882 (1114)
.|..+++.+-|.|+.+ -++..++..+|+|.+.. .+. ...+ ..+..++++..|+..+.++|.+.+-|.
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDT 173 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT 173 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccC
Confidence 3889999999999874 23344467899999873 211 1112 234568999999988899999999999
Q ss_pred cEEEEEcccce---EEEeecccccCeeEEEEcCCC-CEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEE
Q 001248 883 SIQIYNVRVDE---VKSKLKGHSKRITGLAFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRV 958 (1114)
Q Consensus 883 ~v~iwd~~~~~---~~~~l~~h~~~V~~l~~s~d~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v 958 (1114)
+..|||++++. ....+-+|..+|..|+|..++ +.+||+|.||.|++||+...+.... +-..... ..+...+
T Consensus 174 TCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTI--IYE~p~~---~~pLlRL 248 (364)
T KOG0290|consen 174 TCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTI--IYEDPSP---STPLLRL 248 (364)
T ss_pred eEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceE--EecCCCC---CCcceee
Confidence 99999999863 466788999999999999865 5789999999999999998554322 2111111 2367888
Q ss_pred EEcc-CCcEEEE-Ee-CCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCC-CEEEEEEcCCeEEEEEcCCCeeeEEeC
Q 001248 959 QFHQ-DQIHFLV-VH-ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDS-QLVYACFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 959 ~fsp-dg~~l~~-~~-d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
+|++ |-+++|+ +. ...|.|.|++.-.. ....+.+|.+.|..++|.|.. ..|++++.|..+.+||+.+.-.-....
T Consensus 249 swnkqDpnymATf~~dS~~V~iLDiR~P~t-pva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~d 327 (364)
T KOG0290|consen 249 SWNKQDPNYMATFAMDSNKVVILDIRVPCT-PVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGED 327 (364)
T ss_pred ccCcCCchHHhhhhcCCceEEEEEecCCCc-ceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCC
Confidence 8887 5677888 54 45799999875432 233445999999999999965 469999999999999997643311111
Q ss_pred C-CcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEE
Q 001248 1035 P-SAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHV 1074 (1114)
Q Consensus 1035 ~-~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~v 1074 (1114)
+ ..|.. .++|+ .+.|++..++.++.+. ++++.+
T Consensus 328 Pilay~a----~~EVN--qi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 328 PILAYTA----GGEVN--QIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred chhhhhc----cceee--eeeecccCCCEEEEEe-cCeeeE
Confidence 1 12221 33466 8999988888988876 444444
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.2e-15 Score=153.11 Aligned_cols=199 Identities=17% Similarity=0.169 Sum_probs=151.1
Q ss_pred EEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccccccc
Q 001248 863 TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFL 942 (1114)
Q Consensus 863 ~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 942 (1114)
.+++|++ +|..|++|+.||++|||+..+...+.....|...|.++.|||||++|++.+.| ..+||+++++-. +
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~-----~ 220 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA-----L 220 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch-----h
Confidence 7899999 89999999999999999988888788888899999999999999999999999 799999999732 2
Q ss_pred ccCCCCCCCCCCceEEEEccCC---cE-EEE--EeCCeEEEEEcCCCce---eeeeecCCCCcCeeEEEECCCCCEEEEE
Q 001248 943 QIPTGRTPTAQSDTRVQFHQDQ---IH-FLV--VHETQLAIFETTKLEC---VKQWVPRESSAPITHATFSCDSQLVYAC 1013 (1114)
Q Consensus 943 ~~~~~~~~~~~~i~~v~fspdg---~~-l~~--~~d~~i~iwd~~~~~~---~~~~~~~~h~~~v~~l~~s~dg~~l~s~ 1013 (1114)
..... ....-....+.|+.|+ .+ +++ ..-+.|+.||+..... .+....-.-...|++++.|+||+++|.|
T Consensus 221 a~~t~-~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG 299 (398)
T KOG0771|consen 221 ARKTP-FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG 299 (398)
T ss_pred hhcCC-cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe
Confidence 21111 0011245678898887 33 333 2445677766543322 1111111124589999999999999999
Q ss_pred EcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccC
Q 001248 1014 FLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1014 s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~ 1079 (1114)
+.||.|.|++..+.+.+.-++ ..|. ..++.+.|+| |.+++++.+.|....|..+.-
T Consensus 300 T~dGsVai~~~~~lq~~~~vk------~aH~---~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 300 TMDGSVAIYDAKSLQRLQYVK------EAHL---GFVTGLTFSP-DSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred ccCCcEEEEEeceeeeeEeeh------hhhe---eeeeeEEEcC-CcCcccccccCCceeEEEEee
Confidence 999999999999888876554 2221 3445999999 689999999999999999866
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.5e-14 Score=138.43 Aligned_cols=252 Identities=16% Similarity=0.258 Sum_probs=183.4
Q ss_pred ccCCCCceEEEEcCCCC----eEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC
Q 001248 355 LNQGSSPMSMDFHPVQQ----TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1114)
Q Consensus 355 ~~h~~~v~~v~~spdg~----~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1114)
+.|.-+++.+.|.||.+ .||||. +..+++|.+...+.... +...+....-..+..++++..|+.
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~----------~~~~L~~~kns~~~aPlTSFDWne 160 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVE----------LQSVLNNNKNSEFCAPLTSFDWNE 160 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCcee----------hhhhhccCcccccCCccccccccc
Confidence 57999999999999873 367764 46899999874322111 011111222345678999999998
Q ss_pred -CCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEe---e
Q 001248 431 -DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF---E 506 (1114)
Q Consensus 431 -dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~ 506 (1114)
|-++|.+++-|-+..|||++++..-.....|-+|...|..|+|+..+.. +|++.|.||+|+++|++..+--..+ .
T Consensus 161 ~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~-~FASvgaDGSvRmFDLR~leHSTIIYE~p 239 (364)
T KOG0290|consen 161 VDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD-VFASVGADGSVRMFDLRSLEHSTIIYEDP 239 (364)
T ss_pred CCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc-eEEEecCCCcEEEEEecccccceEEecCC
Confidence 8889999999999999999997432222357789999999999998877 8999999999999999865433222 2
Q ss_pred ccccCEEEEeeccCCCceEEEEEecC-CeEEEEEcCCCC-CeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecC
Q 001248 507 GHEAPVYSVCPHHKENIQFIFSTALD-GKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 584 (1114)
Q Consensus 507 ~h~~~v~~~~~~~~~~~~~l~s~~~d-~~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~ 584 (1114)
....+..-++|+. .|-+++++-..| ..|.+-|++... ....+..|...|..++|.|...
T Consensus 240 ~~~~pLlRLswnk-qDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~------------------ 300 (364)
T KOG0290|consen 240 SPSTPLLRLSWNK-QDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSS------------------ 300 (364)
T ss_pred CCCCcceeeccCc-CCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCC------------------
Confidence 2245667788864 344788887775 468999998764 4557888999999999988765
Q ss_pred CCCEEEEEeCCCeEEEEECCCcce------EEEeccCCCCCCcCeEEEcC-CCCEEEEEeCCCcEEE
Q 001248 585 TKNRFLAAGDDFSIKFWDMDSVQL------LTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKI 644 (1114)
Q Consensus 585 ~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~dg~i~i 644 (1114)
..+++++.|..+.+||+..--. +..+. ...+|+.+.|++ .+..++.+.. +++.+
T Consensus 301 --~hictaGDD~qaliWDl~q~~~~~~~dPilay~---a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 301 --SHICTAGDDCQALIWDLQQMPRENGEDPILAYT---AGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred --ceeeecCCcceEEEEecccccccCCCCchhhhh---ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 4699999999999999875321 22222 234689999997 5677777654 34443
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.4e-12 Score=144.51 Aligned_cols=151 Identities=17% Similarity=0.300 Sum_probs=124.6
Q ss_pred EEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCCe
Q 001248 364 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI 443 (1114)
Q Consensus 364 v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~ 443 (1114)
+.++++.-| +++|+.-+.|.+|++...+.-. .+.||.+.|.++.||-||+++++.++|.+
T Consensus 139 ~g~s~~~~~-i~~gsv~~~iivW~~~~dn~p~-------------------~l~GHeG~iF~i~~s~dg~~i~s~SdDRs 198 (967)
T KOG0974|consen 139 IGDSAEELY-IASGSVFGEIIVWKPHEDNKPI-------------------RLKGHEGSIFSIVTSLDGRYIASVSDDRS 198 (967)
T ss_pred EeccCcEEE-EEeccccccEEEEeccccCCcc-------------------eecccCCceEEEEEccCCcEEEEEecCcc
Confidence 345666665 8999999999999987322211 37899999999999999999999999999
Q ss_pred EEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccc-cCEEEEeeccCCC
Q 001248 444 VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE-APVYSVCPHHKEN 522 (1114)
Q Consensus 444 i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~ 522 (1114)
+++|++++.+.... +.-+|...|+.+.|.|+ .++|++.|.+.++|+ ..++.+..+.+|. ..|..++... +
T Consensus 199 iRlW~i~s~~~~~~--~~fgHsaRvw~~~~~~n----~i~t~gedctcrvW~-~~~~~l~~y~~h~g~~iw~~~~~~--~ 269 (967)
T KOG0974|consen 199 IRLWPIDSREVLGC--TGFGHSARVWACCFLPN----RIITVGEDCTCRVWG-VNGTQLEVYDEHSGKGIWKIAVPI--G 269 (967)
T ss_pred eeeeecccccccCc--ccccccceeEEEEeccc----eeEEeccceEEEEEe-cccceehhhhhhhhcceeEEEEcC--C
Confidence 99999999886652 46689999999999998 389999999999997 4566666888876 4578877644 3
Q ss_pred ceEEEEEecCCeEEEEEcCCC
Q 001248 523 IQFIFSTALDGKIKAWLYDNL 543 (1114)
Q Consensus 523 ~~~l~s~~~d~~i~~wd~~~~ 543 (1114)
...+++++.|+.+++||+...
T Consensus 270 ~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 270 VIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred ceEEEeeccCcchhhhhhhcc
Confidence 378999999999999998754
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.1e-13 Score=156.56 Aligned_cols=212 Identities=12% Similarity=0.133 Sum_probs=150.0
Q ss_pred cccCCCCCeeEEEEcCC-CCeEEEEeCCCeEEEEEccC----CceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCC
Q 001248 415 LVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHG----GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK 489 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spd-g~~las~~~dg~i~iwd~~~----~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~ 489 (1114)
.+..|...|..++.+++ +.++++|+.||+|++||... +...+...++......+.++.+.+.+. .+|.++.||
T Consensus 1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG 1120 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDG 1120 (1431)
T ss_pred hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCC
Confidence 47789999999998875 49999999999999999863 123344445555577899999999999 688889999
Q ss_pred CEEEEeCCCC--cc-----eeEeecc-ccCEEEE-eeccCCCceEEEEEecCCeEEEEEcCCCCCeeeec--CCCCeeEE
Q 001248 490 TIKVWDATNG--AK-----QYIFEGH-EAPVYSV-CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE--APGRWCTT 558 (1114)
Q Consensus 490 ~i~iwd~~~~--~~-----~~~~~~h-~~~v~~~-~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~~~~~v~~ 558 (1114)
.|++.++... +. .+....+ .+.+.++ ++........++.+..-+.|..||++.......+. ...+.|+
T Consensus 1121 ~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vT- 1199 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVT- 1199 (1431)
T ss_pred eEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccccee-
Confidence 9999998752 11 1112222 2334444 33332222378888889999999998765444332 2233444
Q ss_pred EEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCC---CCEEEE
Q 001248 559 MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD---GCLLAV 635 (1114)
Q Consensus 559 ~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d---~~~l~~ 635 (1114)
.++.+|.++++++|+..|.+.+||++-+.++.......+ .++..+..+|- ....++
T Consensus 1200 --------------------Si~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~-~~i~~v~~~~~~~~~S~~vs 1258 (1431)
T KOG1240|consen 1200 --------------------SIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPAR-APIRHVWLCPTYPQESVSVS 1258 (1431)
T ss_pred --------------------EEEecCCceEEEEecCCceEEEEEeecCceeecccCccc-CCcceEEeeccCCCCceEEE
Confidence 455555556899999999999999999998888875544 56777777763 244444
Q ss_pred E-e-CCCcEEEEEccCC
Q 001248 636 S-T-NDNGIKILATSDG 650 (1114)
Q Consensus 636 ~-~-~dg~i~iwd~~~~ 650 (1114)
+ + ..+.|.+|++.+|
T Consensus 1259 ~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1259 AGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred ecccCCCceeeeecccC
Confidence 4 3 4788999999988
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-14 Score=152.08 Aligned_cols=239 Identities=11% Similarity=0.152 Sum_probs=173.7
Q ss_pred eccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC--C
Q 001248 354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--D 431 (1114)
Q Consensus 354 ~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp--d 431 (1114)
+.+|.+-|+|++|+.||. +|++|+.|-.+.|||+...+.++. +-+||.+.|.++.|-| +
T Consensus 46 L~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllhs------------------I~TgHtaNIFsvKFvP~tn 106 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHS------------------ISTGHTANIFSVKFVPYTN 106 (758)
T ss_pred hccccceecceeecCCCC-EEeecCCcceEEeecchhcceeee------------------eecccccceeEEeeeccCC
Confidence 445999999999999999 699999999999999998777764 4689999999999999 6
Q ss_pred CCeEEEEeCCCeEEEEEccCCc-------eeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcc---
Q 001248 432 GSLFGVAYSRHIVQIYSYHGGD-------EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK--- 501 (1114)
Q Consensus 432 g~~las~~~dg~i~iwd~~~~~-------~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~--- 501 (1114)
.+.+++|..|..|+++|+...+ ...+...+..|...|..++-.|++.. .+.+++.||+|+-+|++....
T Consensus 107 nriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph~c~p 185 (758)
T KOG1310|consen 107 NRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPHVCNP 185 (758)
T ss_pred CeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCccCCc
Confidence 7889999999999999998522 12233346679999999999999966 799999999999999986321
Q ss_pred ----e---eEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeec-----CCCCeeEEE-EEecCCCeE
Q 001248 502 ----Q---YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-----APGRWCTTM-AYSADGTRT 568 (1114)
Q Consensus 502 ----~---~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-----~~~~~v~~~-~~s~~g~~~ 568 (1114)
. ..+...--...++.+++... .+|+.|+.|-..++||.+...+...-. .+.....++ -|+|.+-..
T Consensus 186 ~~~~~~~l~ny~~~lielk~ltisp~rp-~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn 264 (758)
T KOG1310|consen 186 DEDCPSILVNYNPQLIELKCLTISPSRP-YYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKN 264 (758)
T ss_pred cccccHHHHHhchhhheeeeeeecCCCC-ceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccC
Confidence 1 11112223456777777654 799999999999999964322221100 011112233 345544323
Q ss_pred Eeeecccc---eeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEec
Q 001248 569 YQGFRKRS---LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID 613 (1114)
Q Consensus 569 ~~~~~~~~---v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 613 (1114)
..+..... ...+.|+|+|..|+..-....|+++|+..++....+.
T Consensus 265 ~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 265 SQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYF 312 (758)
T ss_pred cccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence 33322222 4557899999888887777889999998887665543
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.4e-13 Score=154.08 Aligned_cols=226 Identities=14% Similarity=0.135 Sum_probs=149.2
Q ss_pred CCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCC---CeEEEEEccCCceee
Q 001248 380 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVR 456 (1114)
Q Consensus 380 dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d---g~i~iwd~~~~~~~~ 456 (1114)
+..|++||....... .+..|...|.+.+|||||++|+.++.+ ..|++||+.+++..
T Consensus 183 ~~~i~i~d~dg~~~~--------------------~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~- 241 (429)
T PRK01742 183 PYEVRVADYDGFNQF--------------------IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK- 241 (429)
T ss_pred eEEEEEECCCCCCce--------------------EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE-
Confidence 468999998755432 256778889999999999999988653 46999999887643
Q ss_pred eeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE--eCCCCcceeEeeccccCEEEEeeccCCCceEEEEEe-cCC
Q 001248 457 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW--DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDG 533 (1114)
Q Consensus 457 ~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw--d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~d~ 533 (1114)
....+.+| ...++|+|||+. ++++.+.++.+.|| |+.++. +..+..+...+...+|++ ||+.|+..+ .++
T Consensus 242 ~l~~~~g~---~~~~~wSPDG~~-La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSp--DG~~i~f~s~~~g 314 (429)
T PRK01742 242 VVASFRGH---NGAPAFSPDGSR-LAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSP--DGQSILFTSDRSG 314 (429)
T ss_pred EEecCCCc---cCceeECCCCCE-EEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECC--CCCEEEEEECCCC
Confidence 22234444 346899999995 23344567765555 665554 456666777777888765 556665544 578
Q ss_pred eEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEec
Q 001248 534 KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID 613 (1114)
Q Consensus 534 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 613 (1114)
...+|+++..........+.. ....|+|+|++++.++.++ +.+||+.+++......
T Consensus 315 ~~~I~~~~~~~~~~~~l~~~~-----------------------~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~ 370 (429)
T PRK01742 315 SPQVYRMSASGGGASLVGGRG-----------------------YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS 370 (429)
T ss_pred CceEEEEECCCCCeEEecCCC-----------------------CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC
Confidence 889998764322211111110 1234666666787777655 5569998887653332
Q ss_pred cCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEcc--CCccceeecccccc
Q 001248 614 ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS--DGIRLLRTFENLAY 662 (1114)
Q Consensus 614 ~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~ 662 (1114)
.. ....+.|+|||++|+.++.++.+.+|.+. ++ ...+.+..+..
T Consensus 371 ~~----~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G-~~~~~l~~~~g 416 (429)
T PRK01742 371 TF----LDESPSISPNGIMIIYSSTQGLGKVLQLVSADG-RFKARLPGSDG 416 (429)
T ss_pred CC----CCCCceECCCCCEEEEEEcCCCceEEEEEECCC-CceEEccCCCC
Confidence 21 23568899999999999999999888764 34 45555655443
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.1e-14 Score=136.83 Aligned_cols=252 Identities=14% Similarity=0.145 Sum_probs=176.7
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
-..+|+|.+|++|+.. +|++.....|.||.......-. ..+++..|...|++|+|+|....|+
T Consensus 9 ~~~pitchAwn~drt~-iAv~~~~~evhiy~~~~~~~w~----------------~~htls~Hd~~vtgvdWap~snrIv 71 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQ-IAVSPNNHEVHIYSMLGADLWE----------------PAHTLSEHDKIVTGVDWAPKSNRIV 71 (361)
T ss_pred ccCceeeeeecCCCce-EEeccCCceEEEEEecCCCCce----------------eceehhhhCcceeEEeecCCCCcee
Confidence 3578999999999995 8999999999999988765221 1236889999999999999999999
Q ss_pred EEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcce----eEeeccccCE
Q 001248 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ----YIFEGHEAPV 512 (1114)
Q Consensus 437 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~----~~~~~h~~~v 512 (1114)
+++.|..-+||....+...++...+..|+..+++|.|+|.+. .|++||.-..|.||-++...-- +.-+.+.+.|
T Consensus 72 tcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv 149 (361)
T KOG1523|consen 72 TCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTV 149 (361)
T ss_pred EccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCccccce
Confidence 999999999999966666777778889999999999999999 7999999999999887654321 1223467889
Q ss_pred EEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEee-ecccceeEEEecCCCCEEEE
Q 001248 513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG-FRKRSLGVVQFDTTKNRFLA 591 (1114)
Q Consensus 513 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~-~~~~~v~~~~~~~~~~~l~~ 591 (1114)
.++.|++.+ -+|++|+.|+..+++..--.... ........-..+ |-|.....- ...+-+..+.|+|.|+.|+-
T Consensus 150 ~sldWhpnn--VLlaaGs~D~k~rVfSayIK~Vd-ekpap~pWgsk~---PFG~lm~E~~~~ggwvh~v~fs~sG~~law 223 (361)
T KOG1523|consen 150 TSLDWHPNN--VLLAAGSTDGKCRVFSAYIKGVD-EKPAPTPWGSKM---PFGQLMSEASSSGGWVHGVLFSPSGNRLAW 223 (361)
T ss_pred eeeeccCCc--ceecccccCcceeEEEEeeeccc-cCCCCCCCccCC---cHHHHHHhhccCCCceeeeEeCCCCCEeeE
Confidence 999998755 68999999999999854211000 000000000000 000000000 23345666788888889999
Q ss_pred EeCCCeEEEEECCCcc-eEEEeccCCCCCCcCeEEEcCCCCEEEE
Q 001248 592 AGDDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNKDGCLLAV 635 (1114)
Q Consensus 592 ~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 635 (1114)
.+.|..+.+-|..... .+....... -+..++.|-.+...+++
T Consensus 224 v~Hds~v~~~da~~p~~~v~~~~~~~--lP~ls~~~ise~~vv~a 266 (361)
T KOG1523|consen 224 VGHDSTVSFVDAAGPSERVQSVATAQ--LPLLSVSWISENSVVAA 266 (361)
T ss_pred ecCCCceEEeecCCCchhccchhhcc--CCceeeEeecCCceeec
Confidence 9999999999987664 233332221 24566666655444333
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-13 Score=157.38 Aligned_cols=221 Identities=13% Similarity=0.124 Sum_probs=144.1
Q ss_pred EeccCCCCceEEEEcCCCCeEEEEEecC--CcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC
Q 001248 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spdg~~ll~tg~~d--g~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1114)
....|...+.+++|||||++|+.++..+ ..|++||+.+++..... .+.+| ..+++|||
T Consensus 198 ~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~-----------------~~~g~---~~~~~wSP 257 (429)
T PRK01742 198 IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA-----------------SFRGH---NGAPAFSP 257 (429)
T ss_pred EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe-----------------cCCCc---cCceeECC
Confidence 3345788899999999999854443322 46999999887643210 12333 34689999
Q ss_pred CCCeEEEEe-CCCeEEEE--EccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCC-cceeEee
Q 001248 431 DGSLFGVAY-SRHIVQIY--SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFE 506 (1114)
Q Consensus 431 dg~~las~~-~dg~i~iw--d~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~ 506 (1114)
||++|+.++ .+|.+.|| |+.++.. . .+..|...+...+|+|||+. +++++..++...||++... .....+
T Consensus 258 DG~~La~~~~~~g~~~Iy~~d~~~~~~-~---~lt~~~~~~~~~~wSpDG~~-i~f~s~~~g~~~I~~~~~~~~~~~~l- 331 (429)
T PRK01742 258 DGSRLAFASSKDGVLNIYVMGANGGTP-S---QLTSGAGNNTEPSWSPDGQS-ILFTSDRSGSPQVYRMSASGGGASLV- 331 (429)
T ss_pred CCCEEEEEEecCCcEEEEEEECCCCCe-E---eeccCCCCcCCEEECCCCCE-EEEEECCCCCceEEEEECCCCCeEEe-
Confidence 999998875 67766655 5555543 2 35667778889999999995 3445556788888877532 223333
Q ss_pred ccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCC
Q 001248 507 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 586 (1114)
Q Consensus 507 ~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~ 586 (1114)
.+.. ....| +++|+.++..+.++ +.+||+.++........ .... ...|+|++
T Consensus 332 ~~~~--~~~~~--SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~---------------------~~~~sPdG 383 (429)
T PRK01742 332 GGRG--YSAQI--SADGKTLVMINGDN-VVKQDLTSGSTEVLSST--FLDE---------------------SPSISPNG 383 (429)
T ss_pred cCCC--CCccC--CCCCCEEEEEcCCC-EEEEECCCCCeEEecCC--CCCC---------------------CceECCCC
Confidence 3433 33455 55667888877765 55589876543321111 0111 23466666
Q ss_pred CEEEEEeCCCeEEEEEC--CCcceEEEeccCCCCCCcCeEEEcCC
Q 001248 587 NRFLAAGDDFSIKFWDM--DSVQLLTSIDADGGLPASPRIRFNKD 629 (1114)
Q Consensus 587 ~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~~~~s~d 629 (1114)
++++.++.++.+.+|.+ .+|..+..+..+. ..+...+|+|-
T Consensus 384 ~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~--g~~~~p~wsp~ 426 (429)
T PRK01742 384 IMIIYSSTQGLGKVLQLVSADGRFKARLPGSD--GQVKFPAWSPY 426 (429)
T ss_pred CEEEEEEcCCCceEEEEEECCCCceEEccCCC--CCCCCcccCCC
Confidence 78999888888888875 3577777776553 35788899873
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.7e-13 Score=153.15 Aligned_cols=269 Identities=14% Similarity=0.142 Sum_probs=177.1
Q ss_pred eeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC
Q 001248 351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1114)
Q Consensus 351 ~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1114)
+.++..|...|..++.++...-+++||+.||+|++||...-..-. .. .....++.-....+.++...+
T Consensus 1041 VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-~s-----------~rS~ltys~~~sr~~~vt~~~ 1108 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-GS-----------ARSELTYSPEGSRVEKVTMCG 1108 (1431)
T ss_pred eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-ce-----------eeeeEEEeccCCceEEEEecc
Confidence 344455999999999988773379999999999999986432210 00 001112333567899999999
Q ss_pred CCCeEEEEeCCCeEEEEEccCC--ceee--eeEeeccc--cCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeE
Q 001248 431 DGSLFGVAYSRHIVQIYSYHGG--DEVR--QHLEIDAH--VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 504 (1114)
Q Consensus 431 dg~~las~~~dg~i~iwd~~~~--~~~~--~~~~l~~h--~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 504 (1114)
.|..+|+++.||.|++.+++-. .... +......+ ...|..-+|....+...++.+..-+.|..||+.+...+.+
T Consensus 1109 ~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~ 1188 (1431)
T KOG1240|consen 1109 NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR 1188 (1431)
T ss_pred CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh
Confidence 9999999999999999998752 1111 11111222 2234444555444433677788889999999988776665
Q ss_pred ee--ccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCC-CCeeEEEEEecCCCeEEeeecccceeEEE
Q 001248 505 FE--GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP-GRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581 (1114)
Q Consensus 505 ~~--~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~g~~~~~~~~~~~v~~~~ 581 (1114)
++ -..+.|++++.++ .++++++|...|.+.+||++-...+.....+ ..++..+...|-.
T Consensus 1189 lk~~~~hG~vTSi~idp--~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~---------------- 1250 (1431)
T KOG1240|consen 1189 LKNQLRHGLVTSIVIDP--WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTY---------------- 1250 (1431)
T ss_pred hhcCccccceeEEEecC--CceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccC----------------
Confidence 54 2458899999755 4479999999999999999876665544332 2344444443322
Q ss_pred ecCCCCEEEE-Ee-CCCeEEEEECCCcceEEEeccCCC-----------------CCCcCeEEEcCCCCEEEEEeCCCcE
Q 001248 582 FDTTKNRFLA-AG-DDFSIKFWDMDSVQLLTSIDADGG-----------------LPASPRIRFNKDGCLLAVSTNDNGI 642 (1114)
Q Consensus 582 ~~~~~~~l~~-~~-~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~~v~~~~~s~d~~~l~~~~~dg~i 642 (1114)
+.....++ ++ ..+.|.+|++.+|.+...+..... .-......+...+..+.+|+.|..|
T Consensus 1251 --~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kI 1328 (1431)
T KOG1240|consen 1251 --PQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKI 1328 (1431)
T ss_pred --CCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccce
Confidence 12223444 33 578899999999877666643210 0111223333456788999999999
Q ss_pred EEEEccCCc
Q 001248 643 KILATSDGI 651 (1114)
Q Consensus 643 ~iwd~~~~~ 651 (1114)
+.||.....
T Consensus 1329 R~wD~~~p~ 1337 (1431)
T KOG1240|consen 1329 RKWDPTRPE 1337 (1431)
T ss_pred eeccCCCcc
Confidence 999987763
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.2e-13 Score=131.66 Aligned_cols=242 Identities=14% Similarity=0.191 Sum_probs=169.8
Q ss_pred CCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCCCC--CeEEEEEecCCCcEEEE-EeCC------CcEEEEEc
Q 001248 819 EAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPP--AATFLAFHPQDNNIIAI-GMDD------SSIQIYNV 889 (1114)
Q Consensus 819 ~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~--~i~~l~~sp~d~~~la~-g~~d------g~v~iwd~ 889 (1114)
....+++|+.|..-++++.|...+||+.+-.+.....+.+.. .+..+-| ..++||. |+.+ ..|.|||=
T Consensus 6 ~~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLf---R~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 6 PKTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLF---RSNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred CceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhh---hhceEEEecCCCCCCCCCceEEEEec
Confidence 345569999999999999998899999875443322222222 2333333 2345543 3322 37999997
Q ss_pred ccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE
Q 001248 890 RVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 969 (1114)
Q Consensus 890 ~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~ 969 (1114)
...+++.++. ...+|.+|.+++| .|++.- .+.|.||.....-+. ...+...... ..+.+++=+.+..+||.
T Consensus 83 ~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~-l~~~et~~NP----kGlC~~~~~~~k~~Laf 153 (346)
T KOG2111|consen 83 LKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKL-LHVIETRSNP----KGLCSLCPTSNKSLLAF 153 (346)
T ss_pred ccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhh-eeeeecccCC----CceEeecCCCCceEEEc
Confidence 7777777776 5678999999866 455544 567999998853221 1122211111 12333333334556666
Q ss_pred -E-eCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCe-EEEEEcCCCeeeEEeCCCcccCCCCCCC
Q 001248 970 -V-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT-VCVFSAANLKLRCRINPSAYLPAGVSSS 1046 (1114)
Q Consensus 970 -~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~-I~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1046 (1114)
| .-|+|.|-|+...+.-......+|.+.|.|++.+-+|.++|++|..|+ |||||..+|.+++.+. .|...+
T Consensus 154 Pg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~R------RG~d~A 227 (346)
T KOG2111|consen 154 PGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELR------RGVDRA 227 (346)
T ss_pred CCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeee------cCCchh
Confidence 4 568999999887666323334589999999999999999999999998 9999999999999877 343344
Q ss_pred CccceEEEecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1047 NVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1047 ~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
.++ +++|+| |..+|++.|..|+|+++.+...+
T Consensus 228 ~iy--~iaFSp-~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 228 DIY--CIAFSP-NSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred eEE--EEEeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence 477 999999 68999999999999999998755
|
|
| >KOG2659 consensus LisH motif-containing protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-14 Score=138.90 Aligned_cols=169 Identities=19% Similarity=0.263 Sum_probs=134.3
Q ss_pred chHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCcc---------HHHHHHHhhccCHHHHHHHhccCc--cccCcccchhh
Q 001248 4 LSRELVFLILQFLDEEKFKETVHKLEQESGFFFN---------MKYFEDEVHNGNWDDVEKYLSGFT--KVDDNRYSMKI 72 (1114)
Q Consensus 4 ~~~~v~~li~q~L~~~g~~~s~~~l~~Esg~~~~---------~~~~~~~i~~g~w~~~~~~~~~~~--~~~~~~~~~~~ 72 (1114)
-.+|+++||+.||...||.++|+.|.+|+|+..+ ...+|.+|..|+.++|++.+.++. .++.+ ..+
T Consensus 25 ~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n---~~l 101 (228)
T KOG2659|consen 25 MREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN---REL 101 (228)
T ss_pred chhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc---hhH
Confidence 4679999999999999999999999999999772 568999999999999999999983 33433 249
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHHhccccccchhhhccC-CCChHHHHHHHHHHHhhc
Q 001248 73 FFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKY-GDTKSARSIMLVELKKLI 151 (1114)
Q Consensus 73 ~~~l~~~~~lell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~-~~~~~~R~~l~~~l~~~~ 151 (1114)
.|.+++|+++||++++..++|+.|+|.++.|+...++..++.+...|....++..+..+.. --....|+++++.+...|
T Consensus 102 ~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~l~~~s~R~kvA~~vN~ai 181 (228)
T KOG2659|consen 102 FFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAELLSQSLRQKVASEVNSAI 181 (228)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998888999999998877666643322110 013457899999888776
Q ss_pred ccCCCcccccCCCCCchhHHHHHHHHhHHHHH
Q 001248 152 EANPLFRDKLQFPNLKNSRLRTLINQSLNWQH 183 (1114)
Q Consensus 152 ~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~Q~ 183 (1114)
-...- . -...+|..||+...+.|.
T Consensus 182 L~~~~---~-----~~~~~l~~llk~~~~~~~ 205 (228)
T KOG2659|consen 182 LASQE---H-----ESEPKLPFLLKLISWAQE 205 (228)
T ss_pred HHHhc---c-----cccchHHHHHHHHHHHHH
Confidence 54221 0 013478888877777663
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.6e-13 Score=142.54 Aligned_cols=168 Identities=13% Similarity=0.186 Sum_probs=124.7
Q ss_pred eCCCEEEEEe-CCeEEEEEcCCCccccccC----CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc-----------
Q 001248 828 KNDSYVMSAS-GGKISLFNMMTFKTMATFM----PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV----------- 891 (1114)
Q Consensus 828 ~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~----~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~----------- 891 (1114)
+.+--+.+|- -|.|.+.|....+..+.+. .....|+|+.|-|.+...+.++-.+|.+++||..-
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 4555666676 6888888876533222221 12467999999997777888888999999997531
Q ss_pred ---ce--------------EEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCC
Q 001248 892 ---DE--------------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQS 954 (1114)
Q Consensus 892 ---~~--------------~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 954 (1114)
+. .+..+.--.+.|+.++|||||++||+.+.||.++|+|..+.+. +.....-. +.
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eL-----lg~mkSYF---GG 334 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQEL-----LGVMKSYF---GG 334 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHH-----HHHHHhhc---cc
Confidence 11 1111222345789999999999999999999999999998443 22222111 47
Q ss_pred ceEEEEccCCcEEEE-EeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECC
Q 001248 955 DTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSC 1005 (1114)
Q Consensus 955 i~~v~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~ 1005 (1114)
..+++|||||+|+++ +.|.-|.||.....+.+.. .++|.++|+.++|.|
T Consensus 335 LLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR--GqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 335 LLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR--GQGHKSWVSVVAFDP 384 (636)
T ss_pred eEEEEEcCCccEEEecCCcceEEEEEeccceEEEe--ccccccceeeEeecc
Confidence 899999999999999 6899999999998887765 359999999999987
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-10 Score=120.71 Aligned_cols=145 Identities=11% Similarity=0.057 Sum_probs=107.5
Q ss_pred cccceEEEEEccCcceeeecccCc-eEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEee
Q 001248 750 RATKISRLIFTNSGNAILALASNA-IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 828 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~~dg-~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~ 828 (1114)
+...|.-..+..+++.++.+..|| .+-|++.. ++...... +.-+.|.++..++
T Consensus 358 ~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~----------------------~~e~kr~e----~~lg~I~av~vs~ 411 (668)
T COG4946 358 KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKD----------------------GGEVKRIE----KDLGNIEAVKVSP 411 (668)
T ss_pred CCCceEEEEEccCCcceEEeccCCceEEEEecC----------------------CceEEEee----CCccceEEEEEcC
Confidence 344566666666666788888887 67776654 33322211 1456799999999
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCC----cEEEEEcccceEEEeeccccc
Q 001248 829 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS----SIQIYNVRVDEVKSKLKGHSK 903 (1114)
Q Consensus 829 d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg----~v~iwd~~~~~~~~~l~~h~~ 903 (1114)
||++++++. ...|.+.|+.+++....-+...+-|+..+|+| +++++|.+--+| .|++||+.+++....-. ..+
T Consensus 412 dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta 489 (668)
T COG4946 412 DGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTA 489 (668)
T ss_pred CCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecC-Ccc
Confidence 999999998 47899999999887666666677899999999 999999988777 68999999888654433 233
Q ss_pred CeeEEEEcCCCCEEEEEeC
Q 001248 904 RITGLAFSHALNVLVSSGA 922 (1114)
Q Consensus 904 ~V~~l~~s~d~~~l~s~s~ 922 (1114)
.=.+-+|.||+++|.--+.
T Consensus 490 ~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 490 YDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred cccCcccCCCCcEEEEEec
Confidence 3456789999999876543
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.8e-12 Score=140.98 Aligned_cols=325 Identities=11% Similarity=0.117 Sum_probs=198.4
Q ss_pred EEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECC
Q 001248 525 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD 604 (1114)
Q Consensus 525 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 604 (1114)
++++-..++.|.+.|..+.+....+.........+.+++||+ ++++.+.||.|.++|+.
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr---------------------~~yv~~rdg~vsviD~~ 66 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGR---------------------YLYVANRDGTVSVIDLA 66 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SS---------------------EEEEEETTSEEEEEETT
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCC---------------------EEEEEcCCCeEEEEECC
Confidence 345666789999999998777776665444334445555555 67888899999999999
Q ss_pred CcceEEEeccCCCCCCcCeEEEcCCCCEEEEEe-CCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhh
Q 001248 605 SVQLLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAA 683 (1114)
Q Consensus 605 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (1114)
+++.+.++..... ..++++|+||++++++. .++.+.++|..+. +.++.+.......
T Consensus 67 ~~~~v~~i~~G~~---~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl-e~v~~I~~~~~~~------------------- 123 (369)
T PF02239_consen 67 TGKVVATIKVGGN---PRGIAVSPDGKYVYVANYEPGTVSVIDAETL-EPVKTIPTGGMPV------------------- 123 (369)
T ss_dssp SSSEEEEEE-SSE---EEEEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-T-------------------
T ss_pred cccEEEEEecCCC---cceEEEcCCCCEEEEEecCCCceeEeccccc-cceeecccccccc-------------------
Confidence 9999999876433 57899999999998775 6899999999887 4454442211100
Q ss_pred hhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCc
Q 001248 684 AAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSG 763 (1114)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~ 763 (1114)
.....++..+..++..
T Consensus 124 ----------------------------------------------------------------~~~~~Rv~aIv~s~~~ 139 (369)
T PF02239_consen 124 ----------------------------------------------------------------DGPESRVAAIVASPGR 139 (369)
T ss_dssp ----------------------------------------------------------------TTS---EEEEEE-SSS
T ss_pred ----------------------------------------------------------------cccCCCceeEEecCCC
Confidence 0023567777778887
Q ss_pred ceeeecccC-ceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe--CCe
Q 001248 764 NAILALASN-AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGK 840 (1114)
Q Consensus 764 ~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--dg~ 840 (1114)
..++..-.| +.|.+-|..... .+....+ ..........|+|++++++++. ++.
T Consensus 140 ~~fVv~lkd~~~I~vVdy~d~~---------------------~~~~~~i---~~g~~~~D~~~dpdgry~~va~~~sn~ 195 (369)
T PF02239_consen 140 PEFVVNLKDTGEIWVVDYSDPK---------------------NLKVTTI---KVGRFPHDGGFDPDGRYFLVAANGSNK 195 (369)
T ss_dssp SEEEEEETTTTEEEEEETTTSS---------------------CEEEEEE---E--TTEEEEEE-TTSSEEEEEEGGGTE
T ss_pred CEEEEEEccCCeEEEEEecccc---------------------ccceeee---cccccccccccCcccceeeecccccce
Confidence 755555444 766655543210 0000000 0233455789999999988775 689
Q ss_pred EEEEEcCCCccccccCC----CCCCeEEEEEecC---------CCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeE
Q 001248 841 ISLFNMMTFKTMATFMP----PPPAATFLAFHPQ---------DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG 907 (1114)
Q Consensus 841 i~iwd~~~~~~~~~~~~----~~~~i~~l~~sp~---------d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 907 (1114)
|-++|..+++.+..+.. |..+...+ .+|. .+...++.-....+.+||..+++.++++...... .-
T Consensus 196 i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lF 273 (369)
T PF02239_consen 196 IAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LF 273 (369)
T ss_dssp EEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---
T ss_pred eEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ce
Confidence 99999998877655421 22222222 1221 2223322223346678999999999999887776 67
Q ss_pred EEEcCCCCEEEEE----eCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE---eCCeEEEEEc
Q 001248 908 LAFSHALNVLVSS----GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFET 980 (1114)
Q Consensus 908 l~~s~d~~~l~s~----s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~---~d~~i~iwd~ 980 (1114)
+..+|+++++.+. ...++|.++|.++.+... .+....+ ..+..+.|++||+++.++ .++.|.+||.
T Consensus 274 i~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~--~i~~~~~-----~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 274 IKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVK--TITPGPG-----KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDA 346 (369)
T ss_dssp EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE---HHHHHT-------EEEEEE-TTSSEEEEEEE--TTEEEEEET
T ss_pred eecCCCCccEEeeccCCCCCceEEEEECcCcceeE--EEeccCC-----CcEeccEECCCCCEEEEEEecCCCEEEEEEC
Confidence 8889999999987 455899999999854321 1111111 137899999999988773 3448999999
Q ss_pred CCCceeeeee
Q 001248 981 TKLECVKQWV 990 (1114)
Q Consensus 981 ~~~~~~~~~~ 990 (1114)
.+.+.+..+.
T Consensus 347 ~Tl~~~~~i~ 356 (369)
T PF02239_consen 347 KTLKEKKRIP 356 (369)
T ss_dssp TTTEEEEEEE
T ss_pred CCcEEEEEEE
Confidence 9999988765
|
... |
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.5e-11 Score=138.46 Aligned_cols=197 Identities=14% Similarity=0.198 Sum_probs=150.3
Q ss_pred CCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCC-----CeeEEEEcCCCC
Q 001248 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV-----SVNRVIWSPDGS 433 (1114)
Q Consensus 359 ~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~-----~V~~l~~spdg~ 433 (1114)
+.|....+.-+.+. ++.++.++.+.+||...+..... ..+.. ...-+-++++.-
T Consensus 88 ~wi~g~~l~~e~k~-i~l~~~~ns~~i~d~~~~~~~~~--------------------i~~~er~~l~~~~~~g~s~~~~ 146 (967)
T KOG0974|consen 88 DWIFGAKLFEENKK-IALVTSRNSLLIRDSKNSSVLSK--------------------IQSDERCTLYSSLIIGDSAEEL 146 (967)
T ss_pred ccccccchhhhcce-EEEEEcCceEEEEecccCceehh--------------------cCCCceEEEEeEEEEeccCcEE
Confidence 44444566666664 88888999999999987655431 11111 223345678888
Q ss_pred eEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCccee-EeeccccCE
Q 001248 434 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY-IFEGHEAPV 512 (1114)
Q Consensus 434 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~h~~~v 512 (1114)
++++|+.-+.|.+|+......-. .+.||.+.|.++.|+.||. ++++.|+|.++++|++++++... +.-+|...|
T Consensus 147 ~i~~gsv~~~iivW~~~~dn~p~---~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRv 221 (967)
T KOG0974|consen 147 YIASGSVFGEIIVWKPHEDNKPI---RLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARV 221 (967)
T ss_pred EEEeccccccEEEEeccccCCcc---eecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCccccccccee
Confidence 99999999999999998332211 4789999999999999999 89999999999999999998876 777899999
Q ss_pred EEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEE
Q 001248 513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 592 (1114)
Q Consensus 513 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~ 592 (1114)
+.++|.+. .+++++.|.+.++|+.+..... .+.+|..+.+..+..+++....+++
T Consensus 222 w~~~~~~n----~i~t~gedctcrvW~~~~~~l~---------------------~y~~h~g~~iw~~~~~~~~~~~vT~ 276 (967)
T KOG0974|consen 222 WACCFLPN----RIITVGEDCTCRVWGVNGTQLE---------------------VYDEHSGKGIWKIAVPIGVIIKVTG 276 (967)
T ss_pred EEEEeccc----eeEEeccceEEEEEecccceeh---------------------hhhhhhhcceeEEEEcCCceEEEee
Confidence 99998653 8999999999999966532211 3344444455666666666789999
Q ss_pred eCCCeEEEEECCCc
Q 001248 593 GDDFSIKFWDMDSV 606 (1114)
Q Consensus 593 ~~dg~i~iwd~~~~ 606 (1114)
+.|+.+++|++...
T Consensus 277 g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 277 GNDSTLKLWDLNGR 290 (967)
T ss_pred ccCcchhhhhhhcc
Confidence 99999999998653
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.5e-13 Score=130.11 Aligned_cols=244 Identities=15% Similarity=0.125 Sum_probs=181.7
Q ss_pred CCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCC---ccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc-
Q 001248 817 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTF---KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV- 891 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~---~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~- 891 (1114)
...+|+|.+|++|+..+|++. ...|.||..... +..+++..|...|+.+.|+| ..+.|++++.|..-++|...+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccccCCC
Confidence 356899999999999999998 678999988654 46788999999999999999 888999999999999999843
Q ss_pred --ceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE
Q 001248 892 --DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 969 (1114)
Q Consensus 892 --~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~ 969 (1114)
.+....+.-|...+++|.|+|..+.+|+||.-+.|.||-++..+. -+....+... ....|.++.|+|++-+|++
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENd-WWVsKhikkP---irStv~sldWhpnnVLlaa 163 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEND-WWVSKHIKKP---IRSTVTSLDWHPNNVLLAA 163 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccc-eehhhhhCCc---cccceeeeeccCCcceecc
Confidence 345556677899999999999999999999999999998876321 1111111111 1247899999999999999
Q ss_pred -EeCCeEEEEEcC-----C-------------CceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeee
Q 001248 970 -VHETQLAIFETT-----K-------------LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR 1030 (1114)
Q Consensus 970 -~~d~~i~iwd~~-----~-------------~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~ 1030 (1114)
+.|+..+||..- . |+.+.++. ...+.|..+.|+|+|..|+-.+.|.+|.+=|....+..
T Consensus 164 Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~--~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~ 241 (361)
T KOG1523|consen 164 GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS--SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSER 241 (361)
T ss_pred cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc--cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchh
Confidence 589999998732 1 12222221 33678999999999999999999999999998777532
Q ss_pred EEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEecc
Q 001248 1031 CRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1078 (1114)
Q Consensus 1031 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~ 1078 (1114)
.......++| -+++.|.. .+.++.++.|+.=.++...
T Consensus 242 v~~~~~~~lP---------~ls~~~is--e~~vv~ag~~c~P~lf~~~ 278 (361)
T KOG1523|consen 242 VQSVATAQLP---------LLSVSWIS--ENSVVAAGYDCGPVLFVTD 278 (361)
T ss_pred ccchhhccCC---------ceeeEeec--CCceeecCCCCCceEEEec
Confidence 2111112233 22566665 3566667777554554443
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.8e-12 Score=140.98 Aligned_cols=321 Identities=14% Similarity=0.115 Sum_probs=191.2
Q ss_pred eEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEE
Q 001248 480 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM 559 (1114)
Q Consensus 480 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~ 559 (1114)
+++++-..++.|.+.|..+.+.+.++......-..+. +++||+++++.+.||.|.++|+.+.+....+.. +....++
T Consensus 7 l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~--~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~i 83 (369)
T PF02239_consen 7 LFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLK--FSPDGRYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRGI 83 (369)
T ss_dssp EEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE---TT-SSEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEEE
T ss_pred EEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEE--ecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-CCCcceE
Confidence 4567777889999999999999999986544323344 466778999999999999999999876665544 3345566
Q ss_pred EEecCCCeEEeeecccceeEEEecCCCCEEEEE-eCCCeEEEEECCCcceEEEeccCCC-----CCCcCeEEEcCCCCEE
Q 001248 560 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-GDDFSIKFWDMDSVQLLTSIDADGG-----LPASPRIRFNKDGCLL 633 (1114)
Q Consensus 560 ~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~~~~s~d~~~l 633 (1114)
++++||+ +++++ ...+.+.++|..+.+.++.+...+. ...+..+..++....+
T Consensus 84 ~~s~DG~---------------------~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~f 142 (369)
T PF02239_consen 84 AVSPDGK---------------------YVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEF 142 (369)
T ss_dssp EE--TTT---------------------EEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEE
T ss_pred EEcCCCC---------------------EEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEE
Confidence 6666666 56554 4799999999999999988764321 2345677778887755
Q ss_pred EEEeC-CCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccC
Q 001248 634 AVSTN-DNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLA 712 (1114)
Q Consensus 634 ~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (1114)
+..-. .+.|.+.|..+........
T Consensus 143 Vv~lkd~~~I~vVdy~d~~~~~~~~------------------------------------------------------- 167 (369)
T PF02239_consen 143 VVNLKDTGEIWVVDYSDPKNLKVTT------------------------------------------------------- 167 (369)
T ss_dssp EEEETTTTEEEEEETTTSSCEEEEE-------------------------------------------------------
T ss_pred EEEEccCCeEEEEEeccccccceee-------------------------------------------------------
Confidence 55544 4677766665441111000
Q ss_pred CCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeec-ccCceEEEEeecccccCCCCCc
Q 001248 713 DVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILAL-ASNAIHLLWKWQRTERNSSGKA 791 (1114)
Q Consensus 713 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~ 791 (1114)
.+ .........|+|++++++++ ..+..+-++|......
T Consensus 168 ----------------i~-------------------~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~------ 206 (369)
T PF02239_consen 168 ----------------IK-------------------VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL------ 206 (369)
T ss_dssp ----------------EE---------------------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE------
T ss_pred ----------------ec-------------------ccccccccccCcccceeeecccccceeEEEeeccceE------
Confidence 00 11234567889999887664 3356777777653221
Q ss_pred cccccccccCCCCCccccccCCCCCCCCCcc-------EEEE--eeCCCEEEEE-eCCeEEEEEcCCCccccccCCCCCC
Q 001248 792 TASVAPQLWQPPSGIMMTNDVTDSNPEEAVP-------CFAL--SKNDSYVMSA-SGGKISLFNMMTFKTMATFMPPPPA 861 (1114)
Q Consensus 792 ~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~-------~v~~--s~d~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~ 861 (1114)
+.....|... |..+.. ...| +..+...++. +.+.+.+||..+++.++++......
T Consensus 207 -------v~~i~~g~~p--------~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g 271 (369)
T PF02239_consen 207 -------VALIDTGKKP--------HPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG 271 (369)
T ss_dssp -------EEEEE-SSSB--------EETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS
T ss_pred -------EEEeeccccc--------cccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc
Confidence 0111111110 111111 1112 2333333222 3456678999999999998876666
Q ss_pred eEEEEEecCCCcEEEEE----eCCCcEEEEEcccceEEEeecccc-cCeeEEEEcCCCCEEEEEeCCC--cEEEEeCCCC
Q 001248 862 ATFLAFHPQDNNIIAIG----MDDSSIQIYNVRVDEVKSKLKGHS-KRITGLAFSHALNVLVSSGADS--QLCVWSSDGW 934 (1114)
Q Consensus 862 i~~l~~sp~d~~~la~g----~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~s~d~~~l~s~s~D~--~v~iwd~~~~ 934 (1114)
..+..+| +++++.+. ...++|.++|..+.+.+..+.... ..+..+.|++||+.+..+..++ .|.|||..+.
T Consensus 272 -lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl 349 (369)
T PF02239_consen 272 -LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTL 349 (369)
T ss_dssp ---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTT
T ss_pred -ceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCc
Confidence 8888899 88888877 456899999999998888775433 3588999999999776554443 6999999996
Q ss_pred ccc
Q 001248 935 EKQ 937 (1114)
Q Consensus 935 ~~~ 937 (1114)
+..
T Consensus 350 ~~~ 352 (369)
T PF02239_consen 350 KEK 352 (369)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
|
... |
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.8e-12 Score=126.10 Aligned_cols=285 Identities=12% Similarity=0.160 Sum_probs=188.2
Q ss_pred ccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCC
Q 001248 751 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 830 (1114)
Q Consensus 751 ~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~ 830 (1114)
+..+..+++++.-..++++..|-.|++|+-+... ...+. ......|+|++|-|.+
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~--------------------pt~Lk-----s~sQrnvtclawRPls 152 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTC--------------------PTKLK-----SVSQRNVTCLAWRPLS 152 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCC--------------------Cceec-----chhhcceeEEEeccCC
Confidence 4567889999988888999999999999754210 00000 0145679999999965
Q ss_pred -CEEEEEeCCeEEEEEcCCCcc----c--------c--ccCCCCCCeEEEEEecCCCcEEEEEe-CCCcEEEEEcccceE
Q 001248 831 -SYVMSASGGKISLFNMMTFKT----M--------A--TFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDEV 894 (1114)
Q Consensus 831 -~~l~~~~dg~i~iwd~~~~~~----~--------~--~~~~~~~~i~~l~~sp~d~~~la~g~-~dg~v~iwd~~~~~~ 894 (1114)
+-|++|+.+.|.+|.....-. + . ...+| ..|++++|.+ ||..+++++ .|..|.|||..++..
T Consensus 153 aselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~ 230 (445)
T KOG2139|consen 153 ASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQK 230 (445)
T ss_pred cceeeeeecceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCCc
Confidence 467888899999998752111 1 1 11233 5799999999 788888776 567899999999876
Q ss_pred EEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCC-CCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCC
Q 001248 895 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD-GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET 973 (1114)
Q Consensus 895 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~ 973 (1114)
+.-..--.+.++-+.|||||.+|+.++-|+..++|+.. +.....+.+ + .+.|...+|+|+|++|..+.-+
T Consensus 231 ~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l-----g----sgrvqtacWspcGsfLLf~~sg 301 (445)
T KOG2139|consen 231 IPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL-----G----SGRVQTACWSPCGSFLLFACSG 301 (445)
T ss_pred ccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceec-----c----CCceeeeeecCCCCEEEEEEcC
Confidence 65543445678899999999999999999999999543 332222221 1 1368899999999999886666
Q ss_pred eEEEEEcCCCceeee-----------eec-------CC----CCcCeeEEEECCCCCEEEEEEcCCe--------EEEEE
Q 001248 974 QLAIFETTKLECVKQ-----------WVP-------RE----SSAPITHATFSCDSQLVYACFLDAT--------VCVFS 1023 (1114)
Q Consensus 974 ~i~iwd~~~~~~~~~-----------~~~-------~~----h~~~v~~l~~s~dg~~l~s~s~Dg~--------I~vwd 1023 (1114)
.-++|.+.-...... +.. .. -.+++.+++|.|.|.+||+....+. |.+||
T Consensus 302 sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fd 381 (445)
T KOG2139|consen 302 SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFD 381 (445)
T ss_pred CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhc
Confidence 555655432111000 000 01 1567899999999999998775443 66677
Q ss_pred cCCCeeeEEeCCCcccCCCCCCCCccceEEEecC--CCCCeEEEEeCCCcEEEEecc
Q 001248 1024 AANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHP--QEPNEFALGLSDGGVHVFEPL 1078 (1114)
Q Consensus 1024 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~d~~~l~s~~~Dg~v~vW~i~ 1078 (1114)
....-.+ .+.+..... + -.|-.++|+| .++.+|..+=..|.+.-+++.
T Consensus 382 tr~sp~v-els~cg~i~-g-----e~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 382 TRKSPPV-ELSYCGMIG-G-----EYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred ccccCce-EEEeccccc-C-----CCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 6543322 222222221 1 1233566665 355567777677777766654
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=8e-12 Score=125.12 Aligned_cols=287 Identities=11% Similarity=0.144 Sum_probs=179.8
Q ss_pred ccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccc
Q 001248 716 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASV 795 (1114)
Q Consensus 716 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 795 (1114)
-++++..|..|++|+-.. ..+..++ ......|++++|-|.+..-++.+--+-|.+|..+.......
T Consensus 112 ~fava~nddvVriy~kss-t~pt~Lk------s~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r------- 177 (445)
T KOG2139|consen 112 AFAVATNDDVVRIYDKSS-TCPTKLK------SVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANR------- 177 (445)
T ss_pred hhhhhccCcEEEEeccCC-CCCceec------chhhcceeEEEeccCCcceeeeeecceeEEEEcCccccccc-------
Confidence 467889999999999776 3332222 12457899999999776555555556788998764221100
Q ss_pred cccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe--CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCc
Q 001248 796 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN 873 (1114)
Q Consensus 796 ~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~ 873 (1114)
.++.....-++ .+.+.+| ..|+++.+.+||..+++++ |..|.|||..++..+....-..+.++-+.||| |+.
T Consensus 178 ~~~~~s~~~~q----vl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd 251 (445)
T KOG2139|consen 178 NIRMMSTHHLQ----VLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGD 251 (445)
T ss_pred ccccccccchh----heeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCC
Confidence 00000000111 1223335 7899999999999999998 68899999999887665545567799999999 899
Q ss_pred EEEEEeCCCcEEEEEcc-cceEEEeecccccCeeEEEEcCCCCEEEEE-eCCCcEEEEeCCCCcccc----------ccc
Q 001248 874 IIAIGMDDSSIQIYNVR-VDEVKSKLKGHSKRITGLAFSHALNVLVSS-GADSQLCVWSSDGWEKQK----------NRF 941 (1114)
Q Consensus 874 ~la~g~~dg~v~iwd~~-~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~-s~D~~v~iwd~~~~~~~~----------~~~ 941 (1114)
+|..++-|+..++|... +..... ..--++.|...+|+|+|++|..+ +..- ++|.+...+... ...
T Consensus 252 ~lfaAt~davfrlw~e~q~wt~er-w~lgsgrvqtacWspcGsfLLf~~sgsp--~lysl~f~~~~~~~~~~~~~k~~ll 328 (445)
T KOG2139|consen 252 VLFAATCDAVFRLWQENQSWTKER-WILGSGRVQTACWSPCGSFLLFACSGSP--RLYSLTFDGEDSVFLRPQSIKRVLL 328 (445)
T ss_pred EEEEecccceeeeehhcccceecc-eeccCCceeeeeecCCCCEEEEEEcCCc--eEEEEeecCCCccccCcccceeeee
Confidence 99999999999999544 333322 22234589999999999886544 3333 344432211100 000
Q ss_pred ------cccCCCCCCCCCCceEEEEccCCcEEEEEeCC---------eEEEEEcCCCceeeeeecCC-CCcCeeEEEECC
Q 001248 942 ------LQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET---------QLAIFETTKLECVKQWVPRE-SSAPITHATFSC 1005 (1114)
Q Consensus 942 ------~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~---------~i~iwd~~~~~~~~~~~~~~-h~~~v~~l~~s~ 1005 (1114)
.....+.....+.+.+++|.|.|.+||+...+ .|.+||....-.+......- .......++|.|
T Consensus 329 iaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~p 408 (445)
T KOG2139|consen 329 IADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGP 408 (445)
T ss_pred eccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeee
Confidence 11111222223567899999999999995322 35667766544333221110 122355666765
Q ss_pred ---CCCEEEEEEcCCeEEEEEcC
Q 001248 1006 ---DSQLVYACFLDATVCVFSAA 1025 (1114)
Q Consensus 1006 ---dg~~l~s~s~Dg~I~vwd~~ 1025 (1114)
++.+|..+=..|.+.-|++.
T Consensus 409 l~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 409 LKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred cccCCcEEEEEeccCceEeeeeE
Confidence 66677767667777777653
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-12 Score=137.39 Aligned_cols=257 Identities=14% Similarity=0.163 Sum_probs=178.2
Q ss_pred eeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCC--CCCeeEEEE
Q 001248 351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP--GVSVNRVIW 428 (1114)
Q Consensus 351 ~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h--~~~V~~l~~ 428 (1114)
+++-+.+...-+.|..||||+|++|||...-.|++||+..-..-. ..| ...|...-+
T Consensus 44 LiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKF---------------------ERhlDae~V~feiL 102 (703)
T KOG2321|consen 44 LIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKF---------------------ERHLDAEVVDFEIL 102 (703)
T ss_pred HHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeee---------------------eecccccceeEEEe
Confidence 456677899999999999999999999999999999998654322 222 235666667
Q ss_pred cCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeecc
Q 001248 429 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH 508 (1114)
Q Consensus 429 spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h 508 (1114)
|.|-..++.-..|.+|.+..--. .-.. ..+. ..-..|+++.-.-. |+.++....|+-.+++.|..+..+...
T Consensus 103 sDD~SK~v~L~~DR~IefHak~G-~hy~--~RIP---~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~ 174 (703)
T KOG2321|consen 103 SDDYSKSVFLQNDRTIEFHAKYG-RHYR--TRIP---KFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETD 174 (703)
T ss_pred ccchhhheEeecCceeeehhhcC-eeee--eecC---cCCccccccCCCcc--EEEeecCcceEEEEccccccccccccc
Confidence 77777777777888776654322 1110 0111 12234555544443 444444567999999999999999888
Q ss_pred ccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCE
Q 001248 509 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 588 (1114)
Q Consensus 509 ~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~ 588 (1114)
.+.++++.+++-. .+|++|+.+|.|.+||.+.......+..... |.+. |.+ .....++.+.|+.+|-.
T Consensus 175 ~~~lN~v~in~~h--gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~-v~s~---pg~------~~~~svTal~F~d~gL~ 242 (703)
T KOG2321|consen 175 SGELNVVSINEEH--GLLACGTEDGVVEFWDPRDKSRVGTLDAASS-VNSH---PGG------DAAPSVTALKFRDDGLH 242 (703)
T ss_pred cccceeeeecCcc--ceEEecccCceEEEecchhhhhheeeecccc-cCCC---ccc------cccCcceEEEecCCcee
Confidence 8999999876543 5888999999999999998766655443322 1111 100 11124666777777778
Q ss_pred EEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCC--CCEEEEEeCCCcEEEEEccCC
Q 001248 589 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD--GCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 589 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d--~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
+++|...|.+.|||+++.+++..-. |+..-+|..+.|.+. +..+++. ....++|||-.+|
T Consensus 243 ~aVGts~G~v~iyDLRa~~pl~~kd-h~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~G 304 (703)
T KOG2321|consen 243 VAVGTSTGSVLIYDLRASKPLLVKD-HGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTG 304 (703)
T ss_pred EEeeccCCcEEEEEcccCCceeecc-cCCccceeeecccccCCCceEEec-chHHhhhcccccC
Confidence 9999999999999999988876554 444567889999874 3445544 3478999998888
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-12 Score=138.15 Aligned_cols=193 Identities=11% Similarity=0.205 Sum_probs=152.8
Q ss_pred EEEe-eCCCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeec---
Q 001248 824 FALS-KNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK--- 899 (1114)
Q Consensus 824 v~~s-~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~--- 899 (1114)
++++ +.-.++++|+...|+-++++.|..+..+....+.+.++..++ -..+||+|+.+|.|..||..+...+..+.
T Consensus 139 m~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~ 217 (703)
T KOG2321|consen 139 MKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDAAS 217 (703)
T ss_pred ccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecC-ccceEEecccCceEEEecchhhhhheeeeccc
Confidence 4443 344566677778899999999999999988889999999999 78899999999999999998876665553
Q ss_pred ---cccc-----CeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccC--CcEEEE
Q 001248 900 ---GHSK-----RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD--QIHFLV 969 (1114)
Q Consensus 900 ---~h~~-----~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspd--g~~l~~ 969 (1114)
.|.+ .|+++.|+.||-.+++|+.+|.|.|||+.+.+... +... +. ..+|..+.|.+. +..+++
T Consensus 218 ~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~---~kdh-~~---e~pi~~l~~~~~~~q~~v~S 290 (703)
T KOG2321|consen 218 SVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL---VKDH-GY---ELPIKKLDWQDTDQQNKVVS 290 (703)
T ss_pred ccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee---eccc-CC---ccceeeecccccCCCceEEe
Confidence 2333 49999999999999999999999999999854311 1111 11 136888888765 555666
Q ss_pred EeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCC
Q 001248 970 VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1027 (1114)
Q Consensus 970 ~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~ 1027 (1114)
.....++|||-.+|+....+.. ...+..+|+-|++.+++++..++.+..|=+...
T Consensus 291 ~Dk~~~kiWd~~~Gk~~asiEp---t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 291 MDKRILKIWDECTGKPMASIEP---TSDLNDFCFVPGSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred cchHHhhhcccccCCceeeccc---cCCcCceeeecCCceEEEecCCCcceeEEcccc
Confidence 6777899999999999887753 556999999999999999999888877766543
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.4e-13 Score=142.73 Aligned_cols=155 Identities=19% Similarity=0.262 Sum_probs=116.9
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEE-----------eeeeeeccCCCCcccccccccCCCCCeeE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL-----------RNFKVWDLGACSMPLQAALVKDPGVSVNR 425 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~-----------~~~~~~d~~~~~~~~~~~~~~~h~~~V~~ 425 (1114)
.+..|+|+.|-|-+..++..+-.+|.+++||.+--..... +.+..|.-.....|.. .+.--++.|..
T Consensus 218 ~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~--~w~~~~g~in~ 295 (636)
T KOG2394|consen 218 NKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVA--RWHIGEGSINE 295 (636)
T ss_pred cccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccc--eeEeccccccc
Confidence 3488999999998887777788899999998632111000 1111110000001111 12222458999
Q ss_pred EEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEe
Q 001248 426 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 505 (1114)
Q Consensus 426 l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 505 (1114)
++|||||++||+.+.||.++|+|..+.+.+. .++.--+...|++|||||+ ++++|++|-.|.||.+..++.+..-
T Consensus 296 f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg---~mkSYFGGLLCvcWSPDGK--yIvtGGEDDLVtVwSf~erRVVARG 370 (636)
T KOG2394|consen 296 FAFSPDGKYLATVSQDGFLRIFDFDTQELLG---VMKSYFGGLLCVCWSPDGK--YIVTGGEDDLVTVWSFEERRVVARG 370 (636)
T ss_pred eeEcCCCceEEEEecCceEEEeeccHHHHHH---HHHhhccceEEEEEcCCcc--EEEecCCcceEEEEEeccceEEEec
Confidence 9999999999999999999999999876554 3444556899999999999 8999999999999999999999999
Q ss_pred eccccCEEEEeec
Q 001248 506 EGHEAPVYSVCPH 518 (1114)
Q Consensus 506 ~~h~~~v~~~~~~ 518 (1114)
++|..+|..|+|.
T Consensus 371 qGHkSWVs~VaFD 383 (636)
T KOG2394|consen 371 QGHKSWVSVVAFD 383 (636)
T ss_pred cccccceeeEeec
Confidence 9999999999986
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=6e-14 Score=144.60 Aligned_cols=189 Identities=14% Similarity=0.211 Sum_probs=144.3
Q ss_pred CccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEee
Q 001248 820 AVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL 898 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l 898 (1114)
.|..+.|-|.--+|++++ .|.++.-|+.+|+.+..+....+.+..++-+| -+..+-+|..+|+|.+|...+.+.+..+
T Consensus 211 ~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP-~NaVih~GhsnGtVSlWSP~skePLvKi 289 (545)
T KOG1272|consen 211 RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP-YNAVIHLGHSNGTVSLWSPNSKEPLVKI 289 (545)
T ss_pred chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC-ccceEEEcCCCceEEecCCCCcchHHHH
Confidence 344555666666677777 68899999999999999988889999999999 7889999999999999999999999999
Q ss_pred cccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEE
Q 001248 899 KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIF 978 (1114)
Q Consensus 899 ~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iw 978 (1114)
..|.++|.+|++.++|+++||++.|..++|||+...... ...+. ......++||.-|. ||.+....|.||
T Consensus 290 LcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql-------~t~~t--p~~a~~ls~Sqkgl-LA~~~G~~v~iw 359 (545)
T KOG1272|consen 290 LCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQL-------HTYRT--PHPASNLSLSQKGL-LALSYGDHVQIW 359 (545)
T ss_pred HhcCCCcceEEECCCCcEEeecccccceeEeeecccccc-------ceeec--CCCccccccccccc-eeeecCCeeeee
Confidence 999999999999999999999999999999999984321 11111 13557788887764 566667788999
Q ss_pred Ec-CCCc-eeeeeecCCC--CcCeeEEEECCCCCEEEEEEcCCeEE
Q 001248 979 ET-TKLE-CVKQWVPRES--SAPITHATFSCDSQLVYACFLDATVC 1020 (1114)
Q Consensus 979 d~-~~~~-~~~~~~~~~h--~~~v~~l~~s~dg~~l~s~s~Dg~I~ 1020 (1114)
.- -.+. +...... .| .+.|..+.|.|-...|-.|-.-|.-.
T Consensus 360 ~d~~~~s~~~~~pYm-~H~~~~~V~~l~FcP~EDvLGIGH~~G~ts 404 (545)
T KOG1272|consen 360 KDALKGSGHGETPYM-NHRCGGPVEDLRFCPYEDVLGIGHAGGITS 404 (545)
T ss_pred hhhhcCCCCCCcchh-hhccCcccccceeccHHHeeeccccCCcee
Confidence 52 2222 2111111 22 55899999999777777666555433
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.5e-13 Score=137.12 Aligned_cols=262 Identities=18% Similarity=0.224 Sum_probs=199.2
Q ss_pred CCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeee------------------------eeeccCCCCcccccc
Q 001248 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNF------------------------KVWDLGACSMPLQAA 414 (1114)
Q Consensus 359 ~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~------------------------~~~d~~~~~~~~~~~ 414 (1114)
-....+.|+.+|++ |+.|+..|.|..+|+.+++.....++ .+||-...+...
T Consensus 130 FGPY~~~ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHC--- 205 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHC--- 205 (545)
T ss_pred cCCeeeeecCCccE-EEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEee---
Confidence 34578999999997 66778899999999999988776333 344433222211
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw 494 (1114)
+..| ..|..+.|-|.--+|++++..|.++.-|+++|+.+. .+..-.+.+..|.-+|-+. ++-+|...|+|.+|
T Consensus 206 -lk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa---~~~t~~G~~~vm~qNP~Na--Vih~GhsnGtVSlW 278 (545)
T KOG1272|consen 206 -LKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVA---SIRTGAGRTDVMKQNPYNA--VIHLGHSNGTVSLW 278 (545)
T ss_pred -hhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhH---HHHccCCccchhhcCCccc--eEEEcCCCceEEec
Confidence 2222 468889999999999999999999999999999887 4556677888999999888 78899999999999
Q ss_pred eCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecc
Q 001248 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1114)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~ 574 (1114)
.....+++..+-.|.++|.++++ +++|.+++|.|.|..++|||++....+.++.. ......+++|..|
T Consensus 279 SP~skePLvKiLcH~g~V~siAv--~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--------- 346 (545)
T KOG1272|consen 279 SPNSKEPLVKILCHRGPVSSIAV--DRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--------- 346 (545)
T ss_pred CCCCcchHHHHHhcCCCcceEEE--CCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc---------
Confidence 99999999888899999999997 45679999999999999999998877666655 4455666666655
Q ss_pred cceeEEEecCCCCEEEEEeCCCeEEEEEC-CC--cceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCc
Q 001248 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDM-DS--VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI 651 (1114)
Q Consensus 575 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~-~~--~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~ 651 (1114)
+++.+....|.||.- -. +.....+..|.-...|..+.|.|-...|-+|...|.-.+.-...|.
T Consensus 347 --------------lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsGe 412 (545)
T KOG1272|consen 347 --------------LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSGE 412 (545)
T ss_pred --------------ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCCCC
Confidence 566677778999952 22 2222233334334578999999988888888887776666555554
Q ss_pred cceeec
Q 001248 652 RLLRTF 657 (1114)
Q Consensus 652 ~~~~~~ 657 (1114)
..+..+
T Consensus 413 PN~Ds~ 418 (545)
T KOG1272|consen 413 PNYDSL 418 (545)
T ss_pred CCcchh
Confidence 444433
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.7e-11 Score=139.60 Aligned_cols=221 Identities=9% Similarity=0.018 Sum_probs=137.9
Q ss_pred EeccCCCCceEEEEcCCCCeEEEEEe--cCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC
Q 001248 353 RTLNQGSSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spdg~~ll~tg~--~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1114)
....+...+.+.+|||||++|+++.. .+..|++|++.+|+... +....+.+..++|||
T Consensus 193 ~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------l~~~~~~~~~~~~SP 252 (429)
T PRK03629 193 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VASFPRHNGAPAFSP 252 (429)
T ss_pred EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ccCCCCCcCCeEECC
Confidence 33447778999999999998554432 23579999998876533 222223355689999
Q ss_pred CCCeEEEE-eCCC--eEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEec-CCCC--EEEEeCCCCcceeE
Q 001248 431 DGSLFGVA-YSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG-DDKT--IKVWDATNGAKQYI 504 (1114)
Q Consensus 431 dg~~las~-~~dg--~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~-~d~~--i~iwd~~~~~~~~~ 504 (1114)
||+.|+.. +.+| .|.+||+.+++..+ +..+...+....|+|||+. |+..+ .++. |.++|+.+++. ..
T Consensus 253 DG~~La~~~~~~g~~~I~~~d~~tg~~~~----lt~~~~~~~~~~wSPDG~~--I~f~s~~~g~~~Iy~~d~~~g~~-~~ 325 (429)
T PRK03629 253 DGSKLAFALSKTGSLNLYVMDLASGQIRQ----VTDGRSNNTEPTWFPDSQN--LAYTSDQAGRPQVYKVNINGGAP-QR 325 (429)
T ss_pred CCCEEEEEEcCCCCcEEEEEECCCCCEEE----ccCCCCCcCceEECCCCCE--EEEEeCCCCCceEEEEECCCCCe-EE
Confidence 99999875 3344 58899998876432 4445557789999999995 44333 3444 55556666543 44
Q ss_pred eeccccCEEEEeeccCCCceEEEEEecC---CeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEE
Q 001248 505 FEGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581 (1114)
Q Consensus 505 ~~~h~~~v~~~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~ 581 (1114)
+..+.......+|+ +||++++..+.+ ..|.+||+.++... .+... ..... ..
T Consensus 326 lt~~~~~~~~~~~S--pDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~---------------------p~ 380 (429)
T PRK03629 326 ITWEGSQNQDADVS--SDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDET---------------------PS 380 (429)
T ss_pred eecCCCCccCEEEC--CCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCC---------------------ce
Confidence 44344445556664 566777766543 35788888765422 22111 11122 34
Q ss_pred ecCCCCEEEEEeCCCe---EEEEECCCcceEEEeccCCCCCCcCeEEEcC
Q 001248 582 FDTTKNRFLAAGDDFS---IKFWDMDSVQLLTSIDADGGLPASPRIRFNK 628 (1114)
Q Consensus 582 ~~~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 628 (1114)
|+|+|..++..+.++. ++++++ +|.....+..+. ..+...+|+|
T Consensus 381 ~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~--~~~~~p~Wsp 427 (429)
T PRK03629 381 IAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATD--GQVKFPAWSP 427 (429)
T ss_pred ECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCC--CCcCCcccCC
Confidence 5556667777776553 677777 455556665443 3577788887
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.1e-10 Score=123.92 Aligned_cols=208 Identities=16% Similarity=0.205 Sum_probs=126.5
Q ss_pred cEEEEeeCCCEEEEEe--CCeEEEEEcCC-Cccccc---c----------CCCCCCeEEEEEecCCCcEEEEEe-CCCcE
Q 001248 822 PCFALSKNDSYVMSAS--GGKISLFNMMT-FKTMAT---F----------MPPPPAATFLAFHPQDNNIIAIGM-DDSSI 884 (1114)
Q Consensus 822 ~~v~~s~d~~~l~~~~--dg~i~iwd~~~-~~~~~~---~----------~~~~~~i~~l~~sp~d~~~la~g~-~dg~v 884 (1114)
..+++++++++|+++. +|.|.++++.. +..... + +.......++.|+| +++++++.. ....|
T Consensus 90 ~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~v 168 (345)
T PF10282_consen 90 CHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADRV 168 (345)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTEE
T ss_pred EEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCCEE
Confidence 3455555555555554 45555555543 211111 1 12234578999999 777666653 34589
Q ss_pred EEEEcccce--EE--Eeec-ccccCeeEEEEcCCCCEEEEEe-CCCcEEEEeCC--CCccccccccccCCCCCCCCCCce
Q 001248 885 QIYNVRVDE--VK--SKLK-GHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSD--GWEKQKNRFLQIPTGRTPTAQSDT 956 (1114)
Q Consensus 885 ~iwd~~~~~--~~--~~l~-~h~~~V~~l~~s~d~~~l~s~s-~D~~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~i~ 956 (1114)
++|++.... +. ..+. .....-..++|+||++++.... .+++|.++++. .+.......+..............
T Consensus 169 ~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 248 (345)
T PF10282_consen 169 YVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPA 248 (345)
T ss_dssp EEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEE
T ss_pred EEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCce
Confidence 999997654 32 2222 2334467899999999886654 57789999998 433222222222222111112568
Q ss_pred EEEEccCCcEEEEE--eCCeEEEEEcC--CCce--eeeeecCCCCcCeeEEEECCCCCEEEEEEc-CCeEEEEEc--CCC
Q 001248 957 RVQFHQDQIHFLVV--HETQLAIFETT--KLEC--VKQWVPRESSAPITHATFSCDSQLVYACFL-DATVCVFSA--ANL 1027 (1114)
Q Consensus 957 ~v~fspdg~~l~~~--~d~~i~iwd~~--~~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~-Dg~I~vwd~--~~~ 1027 (1114)
.++++|||++|.++ ..+.|.+|++. +++. +..+.. .......++++|+|++|++++. ++.|.+|++ .+|
T Consensus 249 ~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~--~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG 326 (345)
T PF10282_consen 249 EIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT--GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTG 326 (345)
T ss_dssp EEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE--SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred eEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC--CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCC
Confidence 89999999999985 56789999983 3333 333332 2445899999999999998884 568999876 577
Q ss_pred eeeEE
Q 001248 1028 KLRCR 1032 (1114)
Q Consensus 1028 ~~~~~ 1032 (1114)
++...
T Consensus 327 ~l~~~ 331 (345)
T PF10282_consen 327 KLTPV 331 (345)
T ss_dssp EEEEE
T ss_pred cEEEe
Confidence 76544
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.9e-10 Score=121.70 Aligned_cols=550 Identities=11% Similarity=0.116 Sum_probs=307.7
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
......|++|+....| +|+|+.||.++|-.+.+...-.. .--+...+.-.....+.||.+.|.-+.|+.+.+.|-
T Consensus 13 nnvkL~c~~WNke~gy-IAcgG~dGlLKVlKl~t~t~d~~----~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLT 87 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGY-IACGGADGLLKVLKLGTDTTDLN----KSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLT 87 (1189)
T ss_pred CCceEEEEEEcccCCe-EEeccccceeEEEEccccCCccc----ccccccccccchhhhhccCcceEEEEEecccccccc
Confidence 4456789999999996 99999999999999876432110 000111222223346899999999999999999999
Q ss_pred EEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcce-eEeeccccCEEEE
Q 001248 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ-YIFEGHEAPVYSV 515 (1114)
Q Consensus 437 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~h~~~v~~~ 515 (1114)
+...+|.|.||-+-.|.-.... .-......|.+|+|..||. .+.....||.|.|=.++..+.- +.+++. ....+
T Consensus 88 tSDt~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv 162 (1189)
T KOG2041|consen 88 TSDTSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHV 162 (1189)
T ss_pred ccCCCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcchh--eccce
Confidence 9999999999998876533211 1223456789999999999 4666667777655443321100 011110 00112
Q ss_pred eeccCCCceEEEEEecCCeEEEEEcC-------------------C--CCCe---------eeecCCCCeeEEEEEecCC
Q 001248 516 CPHHKENIQFIFSTALDGKIKAWLYD-------------------N--LGSR---------VDYEAPGRWCTTMAYSADG 565 (1114)
Q Consensus 516 ~~~~~~~~~~l~s~~~d~~i~~wd~~-------------------~--~~~~---------~~~~~~~~~v~~~~~s~~g 565 (1114)
.|+++ ...++.+-..|.++++|.. + +..+ .....+..++..+++.. |
T Consensus 163 ~ws~D--~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~n-G 239 (1189)
T KOG2041|consen 163 LWSED--LEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYAN-G 239 (1189)
T ss_pred eeccc--HHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcC-c
Confidence 23221 1222223333333333321 0 0000 00111222334444422 2
Q ss_pred Ce-EEee---------ecccceeEEEecCCCCEEEEEeCC---------CeEEEEECCCcceEEEeccCCCCCCcCeEEE
Q 001248 566 TR-TYQG---------FRKRSLGVVQFDTTKNRFLAAGDD---------FSIKFWDMDSVQLLTSIDADGGLPASPRIRF 626 (1114)
Q Consensus 566 ~~-~~~~---------~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 626 (1114)
+. +... ..+-.+.-..|+++|..|+.++.+ +.|.+|.. -|+.+.+++.++. .|++++|
T Consensus 240 r~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~--~It~lsW 316 (1189)
T KOG2041|consen 240 RMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGS--CITGLSW 316 (1189)
T ss_pred eehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCc--eeeeeEE
Confidence 21 1111 111233446788888888887643 35666653 6788888887754 7999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCC
Q 001248 627 NKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNG 706 (1114)
Q Consensus 627 s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (1114)
-..|-.++.+- |+.|.+-+++...+ .-.++...--+...
T Consensus 317 Eg~gLriA~Av-dsfiyfanIRP~yk-Wgy~e~TvVy~y~~--------------------------------------- 355 (1189)
T KOG2041|consen 317 EGTGLRIAIAV-DSFIYFANIRPEYK-WGYIEETVVYVYQK--------------------------------------- 355 (1189)
T ss_pred cCCceEEEEEe-cceEEEEeecccce-EEEeeeEEEEEEcc---------------------------------------
Confidence 98887777654 57888877765421 11111000000000
Q ss_pred CccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccC
Q 001248 707 DVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERN 786 (1114)
Q Consensus 707 ~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~ 786 (1114)
--.-.-.|.+||..+.....+. -....+++|+.+.-.|+.-..+|.+.-++.-.. +
T Consensus 356 ------------~e~p~y~i~Fwdtk~nek~vK~----------V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~-~- 411 (1189)
T KOG2041|consen 356 ------------EELPQYGIMFWDTKTNEKTVKT----------VTHFENMAFYREHCVLINRQDDGVIPEYSTLEN-R- 411 (1189)
T ss_pred ------------CCCcceEEEEEecccChhhhhh----------hcceeehheecccEEEEeccccCCCcchhhhhc-c-
Confidence 0000135778888764433221 123456667666666666666666554321000 0
Q ss_pred CCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCC---CCCCeE
Q 001248 787 SSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMP---PPPAAT 863 (1114)
Q Consensus 787 ~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~---~~~~i~ 863 (1114)
+ ......+.+. -|..+. .....|.-.-..-++.+++.++...+.+|.....+....+.+ +...-
T Consensus 412 --~---~~~~l~LCNS-IGT~lD------~kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rkegr- 478 (1189)
T KOG2041|consen 412 --S---RVYFLQLCNS-IGTSLD------YKYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRKEGR- 478 (1189)
T ss_pred --c---ceEEEeeecc-cCCcCC------CCcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhhhhccccc-
Confidence 0 0000000000 011000 011112222233477888889988899999876655444432 11111
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccc
Q 001248 864 FLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQ 943 (1114)
Q Consensus 864 ~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 943 (1114)
|+- ...-+|+.|+++. .. ..++.|..++|.+++.+ .++|..+-..|.|.-|.+.+......-
T Consensus 479 ---~h~---Ddtp~ga~d~~l~---ys----~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n~y--- 540 (1189)
T KOG2041|consen 479 ---FHG---DDTPEGAQDRTLE---YS----TKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTNSY--- 540 (1189)
T ss_pred ---ccC---CCCccchhhceee---cc----ceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeeecc---
Confidence 332 1223445565442 11 35678889999999997 578999999999999999874322111
Q ss_pred cCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcC---CCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeE
Q 001248 944 IPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETT---KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1019 (1114)
Q Consensus 944 ~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~---~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I 1019 (1114)
+....+..++..-+...+|+ -.-|.+.++|+. ++..+..+. ......|+.+.|..|...|++-.....+
T Consensus 541 ------~~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~-~~errDVWd~~Wa~dNp~llAlmeKtrm 613 (1189)
T KOG2041|consen 541 ------PVNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIY-TSERRDVWDYEWAQDNPNLLALMEKTRM 613 (1189)
T ss_pred ------ccCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeee-hhhhhhhhhhhhccCCchHHhhhhhceE
Confidence 11236788999988888887 466788887765 344444332 2336789999999888877766666667
Q ss_pred EEEEcC
Q 001248 1020 CVFSAA 1025 (1114)
Q Consensus 1020 ~vwd~~ 1025 (1114)
+|++-.
T Consensus 614 yifrgn 619 (1189)
T KOG2041|consen 614 YIFRGN 619 (1189)
T ss_pred EEecCc
Confidence 777643
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.1e-10 Score=121.06 Aligned_cols=285 Identities=16% Similarity=0.249 Sum_probs=180.5
Q ss_pred ceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCE
Q 001248 753 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 832 (1114)
Q Consensus 753 ~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~ 832 (1114)
.+.++.|+|.|.+|.+--. |.+.. ........+++|+.+++......... .... .+..|+.|..+
T Consensus 75 ~~~~L~fSP~g~yL~T~e~------~~i~~------~~~~~~pn~~v~~vet~~~~s~~q~k--~Q~~-W~~qfs~dEsl 139 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEP------WAIYG------PKNASNPNVLVYNVETGVQRSQIQKK--MQNG-WVPQFSIDESL 139 (566)
T ss_pred eeeeeeecccccccccccc------ccccc------CCCCCCCceeeeeeccceehhheehh--hhcC-cccccccchhh
Confidence 5667788888876654211 00000 00001223456777674433221111 2222 57889999887
Q ss_pred EEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCC--CcEEEE-----EeCCCcEEEEEcccceEEEee--cc-cc
Q 001248 833 VMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQD--NNIIAI-----GMDDSSIQIYNVRVDEVKSKL--KG-HS 902 (1114)
Q Consensus 833 l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d--~~~la~-----g~~dg~v~iwd~~~~~~~~~l--~~-h~ 902 (1114)
.+--..+.+.+|+..+.+.+.. .-|...|+.+++|| + ...+|+ ++.-+.|+||...-...-..+ +. ..
T Consensus 140 ~arlv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSp-gp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFk 217 (566)
T KOG2315|consen 140 AARLVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSP-GPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFK 217 (566)
T ss_pred hhhhhcceEEEEecCCccceee-eeeccceeeEEecC-CCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccc
Confidence 7766688999999987443322 23567899999999 5 234543 345568999987632211111 00 11
Q ss_pred cCeeEEEEcCCCCE---EEEEeCC---------CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-
Q 001248 903 KRITGLAFSHALNV---LVSSGAD---------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV- 969 (1114)
Q Consensus 903 ~~V~~l~~s~d~~~---l~s~s~D---------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~- 969 (1114)
..=..+.|++-|.- |++..-| .++.+.++++.. ..+.... .++|.++.|+|+|+-+++
T Consensus 218 adkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s----~~V~L~k-----~GPVhdv~W~~s~~EF~Vv 288 (566)
T KOG2315|consen 218 ADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES----VSVPLLK-----EGPVHDVTWSPSGREFAVV 288 (566)
T ss_pred cceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce----EEEecCC-----CCCceEEEECCCCCEEEEE
Confidence 11234678776653 3333334 367888877311 1122221 258999999999988877
Q ss_pred -E-eCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcC---CeEEEEEcCCCeeeEEeCCCcccCCCCC
Q 001248 970 -V-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD---ATVCVFSAANLKLRCRINPSAYLPAGVS 1044 (1114)
Q Consensus 970 -~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D---g~I~vwd~~~~~~~~~~~~~~~~~~~~~ 1044 (1114)
| .-..+.|||++ +..+..+. .++-.++-|+|.|++|+.++-+ |.+-|||+.+.+++.++. .
T Consensus 289 yGfMPAkvtifnlr-~~~v~df~----egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~----a----- 354 (566)
T KOG2315|consen 289 YGFMPAKVTIFNLR-GKPVFDFP----EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK----A----- 354 (566)
T ss_pred EecccceEEEEcCC-CCEeEeCC----CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccc----c-----
Confidence 4 55789999986 55555554 5677899999999998877754 789999999999998776 1
Q ss_pred CCCccceEEEecCCCCCeEEEEeC------CCcEEEEeccCCC
Q 001248 1045 SSNVHPLVIAAHPQEPNEFALGLS------DGGVHVFEPLESE 1081 (1114)
Q Consensus 1045 ~~~v~~~~~~~~~~d~~~l~s~~~------Dg~v~vW~i~~~~ 1081 (1114)
...+.+.|+| ||.+++|+.. |+.++||++....
T Consensus 355 ---~~tt~~eW~P-dGe~flTATTaPRlrvdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 355 ---ANTTVFEWSP-DGEYFLTATTAPRLRVDNGIKIWHYTGSL 393 (566)
T ss_pred ---CCceEEEEcC-CCcEEEEEeccccEEecCCeEEEEecCce
Confidence 1233689999 7999988875 6899999987654
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.6e-11 Score=133.90 Aligned_cols=223 Identities=13% Similarity=0.147 Sum_probs=137.7
Q ss_pred cEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeC---CCeEEEEEccCCceeeee
Q 001248 382 DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS---RHIVQIYSYHGGDEVRQH 458 (1114)
Q Consensus 382 ~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~---dg~i~iwd~~~~~~~~~~ 458 (1114)
.|.+||.+...... +..+...+.+.+|||||+.||..+. +..|.+|++.+++.. .
T Consensus 180 ~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~- 237 (429)
T PRK03629 180 ELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-Q- 237 (429)
T ss_pred eEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-E-
Confidence 68888887654332 3446678999999999999997642 456999999887633 2
Q ss_pred EeeccccCCeeEEEecCCCCeeEEEEecCCC--CEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEec-CCeE
Q 001248 459 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DGKI 535 (1114)
Q Consensus 459 ~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-d~~i 535 (1114)
+....+.+..++|+|||+.+ +++.+.++ .|++||+.+++.. .+..+...+....|++ ||+.|+..+. ++..
T Consensus 238 --l~~~~~~~~~~~~SPDG~~L-a~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSP--DG~~I~f~s~~~g~~ 311 (429)
T PRK03629 238 --VASFPRHNGAPAFSPDGSKL-AFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFP--DSQNLAYTSDQAGRP 311 (429)
T ss_pred --ccCCCCCcCCeEECCCCCEE-EEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECC--CCCEEEEEeCCCCCc
Confidence 22233345578999999963 33434444 5999999887654 4444445666777754 5577766665 4445
Q ss_pred EEE--EcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeC---CCeEEEEECCCcceEE
Q 001248 536 KAW--LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD---DFSIKFWDMDSVQLLT 610 (1114)
Q Consensus 536 ~~w--d~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~ 610 (1114)
.+| |+.++.. ..+......... ..|+|+|++++..+. ...|++||+.+++..
T Consensus 312 ~Iy~~d~~~g~~-~~lt~~~~~~~~---------------------~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~- 368 (429)
T PRK03629 312 QVYKVNINGGAP-QRITWEGSQNQD---------------------ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ- 368 (429)
T ss_pred eEEEEECCCCCe-EEeecCCCCccC---------------------EEECCCCCEEEEEEccCCCceEEEEECCCCCeE-
Confidence 555 4443322 122212222223 445555556665543 246889999888644
Q ss_pred EeccCCCCCCcCeEEEcCCCCEEEEEeCCCc---EEEEEccCCccceeecccc
Q 001248 611 SIDADGGLPASPRIRFNKDGCLLAVSTNDNG---IKILATSDGIRLLRTFENL 660 (1114)
Q Consensus 611 ~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~ 660 (1114)
.+.... ......|+|||++|+.++.++. +.++++. + ...+.+.++
T Consensus 369 ~Lt~~~---~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G-~~~~~l~~~ 416 (429)
T PRK03629 369 VLTDTF---LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-G-RFKARLPAT 416 (429)
T ss_pred EeCCCC---CCCCceECCCCCEEEEEEcCCCceEEEEEECC-C-CCeEECccC
Confidence 333221 2356889999999999988765 5566653 3 233444443
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.2e-08 Score=122.54 Aligned_cols=538 Identities=12% Similarity=0.138 Sum_probs=287.0
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEE----EcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCC
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLW----EVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iw----d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1114)
..+.|.++.|-+|... ++.+..+|.|.+. +..+.+... ...-...|.|++||||+
T Consensus 74 ~~~~ivs~~yl~d~~~-l~~~~~~Gdi~~~~~~~~~~~~~~E~--------------------VG~vd~GI~a~~WSPD~ 132 (928)
T PF04762_consen 74 PNDKIVSFQYLADSES-LCIALASGDIILVREDPDPDEDEIEI--------------------VGSVDSGILAASWSPDE 132 (928)
T ss_pred CCCcEEEEEeccCCCc-EEEEECCceEEEEEccCCCCCceeEE--------------------EEEEcCcEEEEEECCCc
Confidence 4578999999999986 7788899999999 655544332 23345689999999999
Q ss_pred CeEEEEeCCCeEEEEEccC-------------Cc--ee--------eee----------------------EeeccccCC
Q 001248 433 SLFGVAYSRHIVQIYSYHG-------------GD--EV--------RQH----------------------LEIDAHVGG 467 (1114)
Q Consensus 433 ~~las~~~dg~i~iwd~~~-------------~~--~~--------~~~----------------------~~l~~h~~~ 467 (1114)
..||..+.++++.+.+-.- |+ .+ .+. ..+. +...
T Consensus 133 Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~ 211 (928)
T PF04762_consen 133 ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDG 211 (928)
T ss_pred CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCC
Confidence 9999999999888764210 00 00 000 0111 3334
Q ss_pred eeEEEecCCCCeeEEEEecC------CCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEec---CCeEEEE
Q 001248 468 VNDIAFSHPNKQLCVITCGD------DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL---DGKIKAW 538 (1114)
Q Consensus 468 V~~v~~s~d~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---d~~i~~w 538 (1114)
-..|+|-.||+ ++|..+. -..++||+ +.|....+-..-.+--.+++|.| .|+++++... ...|.+|
T Consensus 212 ~~~ISWRGDG~--yFAVss~~~~~~~~R~iRVy~-ReG~L~stSE~v~gLe~~l~WrP--sG~lIA~~q~~~~~~~VvFf 286 (928)
T PF04762_consen 212 RVRISWRGDGE--YFAVSSVEPETGSRRVIRVYS-REGELQSTSEPVDGLEGALSWRP--SGNLIASSQRLPDRHDVVFF 286 (928)
T ss_pred ceEEEECCCCc--EEEEEEEEcCCCceeEEEEEC-CCceEEeccccCCCccCCccCCC--CCCEEEEEEEcCCCcEEEEE
Confidence 56799999999 5665543 25699999 55765444433333334567654 5578887764 3345556
Q ss_pred EcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceE--EEeccCC
Q 001248 539 LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL--TSIDADG 616 (1114)
Q Consensus 539 d~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~ 616 (1114)
.-+.. ....+. +.+.++ +..+..+.|++++..|+....|. |.+|-..+-.-. +.+....
T Consensus 287 ErNGL-rhgeF~--------l~~~~~---------~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~ 347 (928)
T PF04762_consen 287 ERNGL-RHGEFT--------LRFDPE---------EEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS 347 (928)
T ss_pred ecCCc-EeeeEe--------cCCCCC---------CceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccC
Confidence 43211 111111 111111 11344555666666677766554 999988765422 2332222
Q ss_pred CCCCcCeEEEcC-CCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhcccccccccc
Q 001248 617 GLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA 695 (1114)
Q Consensus 617 ~~~~v~~~~~s~-d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1114)
...+..+.|+| +...|...+.+|.+..++..-. ...+.. .
T Consensus 348 -~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~-----v~~s~~-------------~-------------------- 388 (928)
T PF04762_consen 348 -SESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWD-----VSRSPG-------------S-------------------- 388 (928)
T ss_pred -CCCCCceEECCCCCCEEEEEecCCcEEEEEEEEE-----EEecCC-------------C--------------------
Confidence 12345699999 5566778887788776654211 000000 0
Q ss_pred ccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceE
Q 001248 696 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH 775 (1114)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i 775 (1114)
.++....+..-....+.+-.+.....+.......+. -...|.+++|++++..+++...||.+
T Consensus 389 ---------------~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~---~~~~v~~vaf~~~~~~~avl~~d~~l 450 (928)
T PF04762_consen 389 ---------------SPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE---LPSPVNDVAFSPSNSRFAVLTSDGSL 450 (928)
T ss_pred ---------------CccCceEEEEEeCCeEEEecccccCCCchHhceEEc---CCCCcEEEEEeCCCCeEEEEECCCCE
Confidence 000111111112234555555444433333222211 34689999999999989999999999
Q ss_pred EEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-C---CeEEEEEcCCCc-
Q 001248 776 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-G---GKISLFNMMTFK- 850 (1114)
Q Consensus 776 ~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d---g~i~iwd~~~~~- 850 (1114)
.+|.+.............. .......... .........+..++|..+...++... + ..+.+++.....
T Consensus 451 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 523 (928)
T PF04762_consen 451 SIYEWDLKNMWSVKPPKLL-----SSISLDSMDI--SDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSEN 523 (928)
T ss_pred EEEEecCCCcccccCcchh-----hhcccccccc--cccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCC
Confidence 9998764322110000000 0000000000 00001345577888888887777665 3 468888874332
Q ss_pred --cccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceE-EEeecccccCeeEEEEcCCCC---EEEEEeCCC
Q 001248 851 --TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV-KSKLKGHSKRITGLAFSHALN---VLVSSGADS 924 (1114)
Q Consensus 851 --~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~-~~~l~~h~~~V~~l~~s~d~~---~l~s~s~D~ 924 (1114)
.........+.+..+...+ +...++.-..+|.+..++...... +..|..- ..-..++...+.. .++.-+..|
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~-c~~~~~~~~~~~~~~~~~~GLs~~~ 601 (928)
T PF04762_consen 524 SASVESSTEVDGVVLIISSSP-DSGSLYIQTNDGKVFQLSSDGELSQIVKFPQP-CPWMEVCQINGSEDKRVLFGLSSNG 601 (928)
T ss_pred ceeEEEEeccCceEEEEeeCC-CCcEEEEEECCCEEEEeecCCCccccccCCCC-CcEEEEEEECCccceeEEEEECCCC
Confidence 2222232344555555555 444567777899998766554322 1223221 1222233333332 444444445
Q ss_pred cEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCC-CceeeeeecCC----CCcCe
Q 001248 925 QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTK-LECVKQWVPRE----SSAPI 998 (1114)
Q Consensus 925 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~-~~~~~~~~~~~----h~~~v 998 (1114)
.+.+ ++ . .+. ..+++.++ .+.+|+. .....++..++.. .+...... .. +...+
T Consensus 602 ~Ly~---n~-~-----~la---------~~~tSF~v--~~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~-~~~~~~~de~~ 660 (928)
T PF04762_consen 602 RLYA---NS-R-----LLA---------SNCTSFAV--TDSFLLFTTTQHTLKFVHLNSSVEDLEIPP-DSPENSYDERC 660 (928)
T ss_pred EEEE---CC-E-----EEe---------cCCceEEE--EcCEEEEEecCceEEEEECcCchhhccccc-Ccccccccccc
Confidence 4443 21 0 010 23455555 3445544 6777788888871 11111110 00 01112
Q ss_pred eEEEECCCCCEEEEEEcCCeEEEEEcCCCeee
Q 001248 999 THATFSCDSQLVYACFLDATVCVFSAANLKLR 1030 (1114)
Q Consensus 999 ~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~ 1030 (1114)
.. -.-|..|+++-....=.|..+..|.+-
T Consensus 661 R~---VERGsriVt~vp~~~~vVLQmPRGNLE 689 (928)
T PF04762_consen 661 RR---VERGSRIVTAVPSDTSVVLQMPRGNLE 689 (928)
T ss_pred cc---CccCCEEEEEeCCCceEEEEcCCCchh
Confidence 22 236777777765555566788777654
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.5e-11 Score=137.94 Aligned_cols=222 Identities=13% Similarity=0.100 Sum_probs=136.7
Q ss_pred EeccCCCCceEEEEcCCCCeEEEEEec--CCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC
Q 001248 353 RTLNQGSSPMSMDFHPVQQTLLLVGTN--VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spdg~~ll~tg~~--dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1114)
....|...+.+++|||||++|+++... +..|++||+.+++... +..+.+...+++|||
T Consensus 198 ~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~~~~g~~~~~~~Sp 257 (433)
T PRK04922 198 TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--------------------VASFRGINGAPSFSP 257 (433)
T ss_pred EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--------------------eccCCCCccCceECC
Confidence 444577889999999999974444322 3469999998876543 223334456789999
Q ss_pred CCCeEEEE-eCCC--eEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCC--EEEEeCCCCcceeEe
Q 001248 431 DGSLFGVA-YSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT--IKVWDATNGAKQYIF 505 (1114)
Q Consensus 431 dg~~las~-~~dg--~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~--i~iwd~~~~~~~~~~ 505 (1114)
||+.|+.. +.+| .|.+||+.+++.. .+..|......++|+|||+. ++++...++. |.++|+.+++. ..+
T Consensus 258 DG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~~-l~f~sd~~g~~~iy~~dl~~g~~-~~l 331 (433)
T PRK04922 258 DGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGKS-IYFTSDRGGRPQIYRVAASGGSA-ERL 331 (433)
T ss_pred CCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCCe-EEe
Confidence 99988644 4555 5999999887643 35556656678999999995 2333434454 67777766654 333
Q ss_pred eccccCEEEEeeccCCCceEEEEEecCC---eEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEe
Q 001248 506 EGHEAPVYSVCPHHKENIQFIFSTALDG---KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 582 (1114)
Q Consensus 506 ~~h~~~v~~~~~~~~~~~~~l~s~~~d~---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~ 582 (1114)
..+.......+|+ ++|++++..+.++ .|.+||+.++... .+. +........|+|||
T Consensus 332 t~~g~~~~~~~~S--pDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG----------------- 390 (433)
T PRK04922 332 TFQGNYNARASVS--PDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNG----------------- 390 (433)
T ss_pred ecCCCCccCEEEC--CCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCC-----------------
Confidence 3233344456765 4557777655433 5889998765433 221 11122333445544
Q ss_pred cCCCCEEEEEeC---CCeEEEEECCCcceEEEeccCCCCCCcCeEEEcC
Q 001248 583 DTTKNRFLAAGD---DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 628 (1114)
Q Consensus 583 ~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 628 (1114)
++++..+. .+.|++++... .....+..+. ..+...+|+|
T Consensus 391 ----~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~--g~~~~p~wsp 432 (433)
T PRK04922 391 ----SMVLYATREGGRGVLAAVSTDG-RVRQRLVSAD--GEVREPAWSP 432 (433)
T ss_pred ----CEEEEEEecCCceEEEEEECCC-CceEEcccCC--CCCCCCccCC
Confidence 45555443 34688888754 4445554332 2456677776
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.7e-10 Score=120.42 Aligned_cols=348 Identities=11% Similarity=0.146 Sum_probs=204.9
Q ss_pred CCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEE
Q 001248 358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 437 (1114)
Q Consensus 358 ~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 437 (1114)
...++..++|++|+ ++|.+ .+..|.|++..+++.+... ....+.++.|||-|.+|.+
T Consensus 34 ~~~~~v~~~S~~G~-lfA~~-~~~~v~i~~~~~~~~~lt~---------------------~~~~~~~L~fSP~g~yL~T 90 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGR-LFAYS-DNQVVKVFEIATLKVVLCV---------------------ELKKTYDLLFSPKGNYLLT 90 (566)
T ss_pred CCcceeEEEcCCCc-EEEEE-cCCeEEEEEccCCcEEEEe---------------------ccceeeeeeeccccccccc
Confidence 34478889999999 36654 5789999999988643321 1116899999999999987
Q ss_pred E-----eCC-----CeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeec
Q 001248 438 A-----YSR-----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG 507 (1114)
Q Consensus 438 ~-----~~d-----g~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 507 (1114)
= ..+ -.+.+|+++++.... .+..-...-++..|+.|.. ++.--..+.+.+|++.+-+.+. -.-
T Consensus 91 ~e~~~i~~~~~~~~pn~~v~~vet~~~~s---~~q~k~Q~~W~~qfs~dEs---l~arlv~nev~f~~~~~f~~~~-~kl 163 (566)
T KOG2315|consen 91 WEPWAIYGPKNASNPNVLVYNVETGVQRS---QIQKKMQNGWVPQFSIDES---LAARLVSNEVQFYDLGSFKTIQ-HKL 163 (566)
T ss_pred ccccccccCCCCCCCceeeeeeccceehh---heehhhhcCcccccccchh---hhhhhhcceEEEEecCCcccee-eee
Confidence 1 122 347899999943222 2222122226999999987 4444445689999987643322 122
Q ss_pred cccCEEEEeeccCCCceEEEE-----EecCCeEEEEEcCCCCCeeeecC---CCCeeEEEEEecCCCeEEeeecccceeE
Q 001248 508 HEAPVYSVCPHHKENIQFIFS-----TALDGKIKAWLYDNLGSRVDYEA---PGRWCTTMAYSADGTRTYQGFRKRSLGV 579 (1114)
Q Consensus 508 h~~~v~~~~~~~~~~~~~l~s-----~~~d~~i~~wd~~~~~~~~~~~~---~~~~v~~~~~s~~g~~~~~~~~~~~v~~ 579 (1114)
|...|..+.+++.+.-..+++ .|.-+.+++|.+.....-..+.. -...-..+.|.+-|.-++. +..
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLv------Las 237 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLV------LAS 237 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEE------EEE
Confidence 677888888888765455554 34556799997752211110000 0011123344444432110 000
Q ss_pred EEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEe--CCCcEEEEEccCCccceeec
Q 001248 580 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST--NDNGIKILATSDGIRLLRTF 657 (1114)
Q Consensus 580 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--~dg~i~iwd~~~~~~~~~~~ 657 (1114)
..++..+ .+-..+.++++.++........+.. .++|.++.|+++|+-+++.. .--.+.|+|++..
T Consensus 238 tdVDktn---~SYYGEq~Lyll~t~g~s~~V~L~k---~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~------- 304 (566)
T KOG2315|consen 238 TDVDKTN---ASYYGEQTLYLLATQGESVSVPLLK---EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK------- 304 (566)
T ss_pred EeecCCC---ccccccceEEEEEecCceEEEecCC---CCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-------
Confidence 0011100 0111245677777764444444432 24688888888887665532 2223333332111
Q ss_pred cccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCC
Q 001248 658 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP 737 (1114)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~ 737 (1114)
T Consensus 305 -------------------------------------------------------------------------------- 304 (566)
T KOG2315|consen 305 -------------------------------------------------------------------------------- 304 (566)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCC
Q 001248 738 NQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP 817 (1114)
Q Consensus 738 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~ 817 (1114)
-|+|+ .
T Consensus 305 --------------------------------------~v~df------------------------------------~ 310 (566)
T KOG2315|consen 305 --------------------------------------PVFDF------------------------------------P 310 (566)
T ss_pred --------------------------------------EeEeC------------------------------------C
Confidence 00111 2
Q ss_pred CCCccEEEEeeCCCEEEEEe-C---CeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEe------CCCcEEEE
Q 001248 818 EEAVPCFALSKNDSYVMSAS-G---GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM------DDSSIQIY 887 (1114)
Q Consensus 818 ~~~v~~v~~s~d~~~l~~~~-d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~------~dg~v~iw 887 (1114)
.++-.++-|+|.|++|+.++ + |.|.|||+.+.+++..+... ..+-+.|+| ||.++++++ .|..++||
T Consensus 311 egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~--~tt~~eW~P-dGe~flTATTaPRlrvdNg~Kiw 387 (566)
T KOG2315|consen 311 EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA--NTTVFEWSP-DGEYFLTATTAPRLRVDNGIKIW 387 (566)
T ss_pred CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC--CceEEEEcC-CCcEEEEEeccccEEecCCeEEE
Confidence 34445677888888888776 3 88999999998888777643 457789999 899998886 36789999
Q ss_pred EcccceEEEeecccccCeeEEEEcCC
Q 001248 888 NVRVDEVKSKLKGHSKRITGLAFSHA 913 (1114)
Q Consensus 888 d~~~~~~~~~l~~h~~~V~~l~~s~d 913 (1114)
++. |..+..-.- ..+...+.|-|-
T Consensus 388 hyt-G~~l~~~~f-~sEL~qv~W~P~ 411 (566)
T KOG2315|consen 388 HYT-GSLLHEKMF-KSELLQVEWRPF 411 (566)
T ss_pred Eec-Cceeehhhh-hHhHhheeeeec
Confidence 975 444433221 115777888754
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.8e-11 Score=137.06 Aligned_cols=222 Identities=15% Similarity=0.132 Sum_probs=133.5
Q ss_pred EeccCCCCceEEEEcCCCCeEEEEEecC--CcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC
Q 001248 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spdg~~ll~tg~~d--g~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1114)
....+...+.+.+|||||++|+++...+ ..|++||+.+++... +....+.+.+.+|||
T Consensus 190 ~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------------------l~~~~g~~~~~~~SP 249 (427)
T PRK02889 190 SALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--------------------VANFKGSNSAPAWSP 249 (427)
T ss_pred EeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------eecCCCCccceEECC
Confidence 4456788899999999999854444333 359999999886543 222334567899999
Q ss_pred CCCeEEE-EeCCCeEEEEEcc--CCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeC--CCCcceeEe
Q 001248 431 DGSLFGV-AYSRHIVQIYSYH--GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA--TNGAKQYIF 505 (1114)
Q Consensus 431 dg~~las-~~~dg~i~iwd~~--~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~--~~~~~~~~~ 505 (1114)
||+.|+. .+.++...||.++ ++. .. .+..|...+....|+|||+.+ ++++..++...+|.+ .+++. ..+
T Consensus 250 DG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~l-~f~s~~~g~~~Iy~~~~~~g~~-~~l 323 (427)
T PRK02889 250 DGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRSI-YFTSDRGGAPQIYRMPASGGAA-QRV 323 (427)
T ss_pred CCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCEE-EEEecCCCCcEEEEEECCCCce-EEE
Confidence 9998875 5677776776554 443 33 355566666788999999962 334444566666654 44442 333
Q ss_pred eccccCEEEEeeccCCCceEEEEEecCC---eEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEe
Q 001248 506 EGHEAPVYSVCPHHKENIQFIFSTALDG---KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 582 (1114)
Q Consensus 506 ~~h~~~v~~~~~~~~~~~~~l~s~~~d~---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~ 582 (1114)
..+.......+|+ ++|++++..+.++ .|.+||+.+++.... .. ........|+|||
T Consensus 324 t~~g~~~~~~~~S--pDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~l-t~-~~~~~~p~~spdg----------------- 382 (427)
T PRK02889 324 TFTGSYNTSPRIS--PDGKLLAYISRVGGAFKLYVQDLATGQVTAL-TD-TTRDESPSFAPNG----------------- 382 (427)
T ss_pred ecCCCCcCceEEC--CCCCEEEEEEccCCcEEEEEEECCCCCeEEc-cC-CCCccCceECCCC-----------------
Confidence 2222333345654 5667887776554 689999877543322 11 1122334455554
Q ss_pred cCCCCEEEEEeCCC---eEEEEECCCcceEEEeccCCCCCCcCeEEEcC
Q 001248 583 DTTKNRFLAAGDDF---SIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 628 (1114)
Q Consensus 583 ~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 628 (1114)
+.++..+.++ .+++.+. ++.....+..+. ..+...+|+|
T Consensus 383 ----~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~--g~~~~p~wsp 424 (427)
T PRK02889 383 ----RYILYATQQGGRSVLAAVSS-DGRIKQRLSVQG--GDVREPSWGP 424 (427)
T ss_pred ----CEEEEEEecCCCEEEEEEEC-CCCceEEeecCC--CCCCCCccCC
Confidence 4555554322 3555566 455555554332 2466677876
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-10 Score=133.32 Aligned_cols=216 Identities=13% Similarity=0.079 Sum_probs=140.0
Q ss_pred CcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeC---CCeEEEEEccCCceeee
Q 001248 381 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS---RHIVQIYSYHGGDEVRQ 457 (1114)
Q Consensus 381 g~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~---dg~i~iwd~~~~~~~~~ 457 (1114)
..|.+||....... .+..|...+.+.+|||||+.|+..+. +..|.+||+.+++..
T Consensus 182 ~~l~~~d~dg~~~~--------------------~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-- 239 (435)
T PRK05137 182 KRLAIMDQDGANVR--------------------YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-- 239 (435)
T ss_pred eEEEEECCCCCCcE--------------------EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--
Confidence 37888888654432 25667889999999999999998764 467999999988643
Q ss_pred eEeeccccCCeeEEEecCCCCeeEEEEecCCCC--EEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEec-CC-
Q 001248 458 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT--IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DG- 533 (1114)
Q Consensus 458 ~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~--i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-d~- 533 (1114)
.+..+.+.+.+.+|+|||+. ++++.+.++. |.+||+.++.. ..+..+.......+|++ ||+.|+..+. +|
T Consensus 240 --~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~sp--DG~~i~f~s~~~g~ 313 (435)
T PRK05137 240 --LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSP--DGSQIVFESDRSGS 313 (435)
T ss_pred --EeecCCCcccCcEECCCCCE-EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcC--CCCEEEEEECCCCC
Confidence 34556677889999999996 3456665555 77889887764 55665666666677754 5577776653 33
Q ss_pred -eEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCC---CeEEEEECCCcceE
Q 001248 534 -KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---FSIKFWDMDSVQLL 609 (1114)
Q Consensus 534 -~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~ 609 (1114)
.|.+||+...... .+......+.... |+|+|+.++..+.+ ..|.+||..++..
T Consensus 314 ~~Iy~~d~~g~~~~-~lt~~~~~~~~~~---------------------~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~- 370 (435)
T PRK05137 314 PQLYVMNADGSNPR-RISFGGGRYSTPV---------------------WSPRGDLIAFTKQGGGQFSIGVMKPDGSGE- 370 (435)
T ss_pred CeEEEEECCCCCeE-EeecCCCcccCeE---------------------ECCCCCEEEEEEcCCCceEEEEEECCCCce-
Confidence 5777776543322 2221122223334 55555566554432 4688889865543
Q ss_pred EEeccCCCCCCcCeEEEcCCCCEEEEEeCC------CcEEEEEccCC
Q 001248 610 TSIDADGGLPASPRIRFNKDGCLLAVSTND------NGIKILATSDG 650 (1114)
Q Consensus 610 ~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d------g~i~iwd~~~~ 650 (1114)
..+... ..+....|+|||+.|+..+.+ ..+.++++..+
T Consensus 371 ~~lt~~---~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 371 RILTSG---FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred EeccCC---CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 333322 136788999999998876543 24667776554
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=7e-11 Score=135.71 Aligned_cols=221 Identities=11% Similarity=0.055 Sum_probs=138.3
Q ss_pred EeccCCCCceEEEEcCCCCeEEEEEec--CCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC
Q 001248 353 RTLNQGSSPMSMDFHPVQQTLLLVGTN--VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spdg~~ll~tg~~--dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1114)
....|...+.+.+|||||++|+++... +..|++||+.+++... +..+.+.+.+.+|||
T Consensus 196 ~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~--------------------l~~~~g~~~~~~~SP 255 (435)
T PRK05137 196 YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL--------------------VGNFPGMTFAPRFSP 255 (435)
T ss_pred EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------eecCCCcccCcEECC
Confidence 444588899999999999985554332 4689999999886542 344556778899999
Q ss_pred CCCeEEE-EeCCCe--EEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCC--CEEEEeCCCCcceeEe
Q 001248 431 DGSLFGV-AYSRHI--VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAKQYIF 505 (1114)
Q Consensus 431 dg~~las-~~~dg~--i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~ 505 (1114)
||+.|+. .+.++. |.+||+.+++.. .+..+........|+|||+.++ ++...++ .|++||+..++. ..+
T Consensus 256 DG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~spDG~~i~-f~s~~~g~~~Iy~~d~~g~~~-~~l 329 (435)
T PRK05137 256 DGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSPDGSQIV-FESDRSGSPQLYVMNADGSNP-RRI 329 (435)
T ss_pred CCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcCCCCEEE-EEECCCCCCeEEEEECCCCCe-EEe
Confidence 9998864 445554 777788877643 3556666778899999999632 2332333 588889776554 444
Q ss_pred eccccCEEEEeeccCCCceEEEEEecC---CeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEe
Q 001248 506 EGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 582 (1114)
Q Consensus 506 ~~h~~~v~~~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~ 582 (1114)
..+...+....|++ +|+.|+..+.+ ..|.+||+..... ..+. ....+....|+|||
T Consensus 330 t~~~~~~~~~~~Sp--dG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG----------------- 388 (435)
T PRK05137 330 SFGGGRYSTPVWSP--RGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNG----------------- 388 (435)
T ss_pred ecCCCcccCeEECC--CCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCC-----------------
Confidence 44455566667654 55777766543 3577788754332 2221 11223444555555
Q ss_pred cCCCCEEEEEeCC------CeEEEEECCCcceEEEeccCCCCCCcCeEEEcC
Q 001248 583 DTTKNRFLAAGDD------FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 628 (1114)
Q Consensus 583 ~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 628 (1114)
+.++..+.+ ..++++|+..+.. ..+...+ .+...+|+|
T Consensus 389 ----~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~---~~~~p~Wsp 432 (435)
T PRK05137 389 ----RVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPG---DASDPAWSP 432 (435)
T ss_pred ----CEEEEEEccCCCCCcceEEEEECCCCce-EEccCCC---CccCcccCC
Confidence 455543321 3688888866544 3443222 356667776
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.6e-09 Score=108.61 Aligned_cols=171 Identities=15% Similarity=0.154 Sum_probs=133.5
Q ss_pred CCCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCC-cEEEEEcccceEEEeecccccCeeE
Q 001248 829 NDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS-SIQIYNVRVDEVKSKLKGHSKRITG 907 (1114)
Q Consensus 829 d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg-~v~iwd~~~~~~~~~l~~h~~~V~~ 907 (1114)
+|.+++..+-|+..|.+...+-.++ -++...|.-..+.- +++-++.|..|| .+-|||..+++ +..+...-+.|.+
T Consensus 331 ~Gd~ia~VSRGkaFi~~~~~~~~iq--v~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~a 406 (668)
T COG4946 331 NGDYIALVSRGKAFIMRPWDGYSIQ--VGKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEA 406 (668)
T ss_pred CCcEEEEEecCcEEEECCCCCeeEE--cCCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCce-EEEeeCCccceEE
Confidence 7889999999998888876554433 23566788888887 677889999999 99999999876 4556667788999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eC----CeEEEEEcCC
Q 001248 908 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE----TQLAIFETTK 982 (1114)
Q Consensus 908 l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d----~~i~iwd~~~ 982 (1114)
+..++||++++.+.....+.+.|++++.... +... ..+-|+.+.|+|+++++|.+ -+ ..|++||+.+
T Consensus 407 v~vs~dGK~~vvaNdr~el~vididngnv~~---idkS-----~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 407 VKVSPDGKKVVVANDRFELWVIDIDNGNVRL---IDKS-----EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred EEEcCCCcEEEEEcCceEEEEEEecCCCeeE---eccc-----ccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 9999999999999888899999999976422 1111 12478999999999999996 33 4799999999
Q ss_pred CceeeeeecCCCCcCeeEEEECCCCCEEEEEE
Q 001248 983 LECVKQWVPRESSAPITHATFSCDSQLVYACF 1014 (1114)
Q Consensus 983 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s 1014 (1114)
++........+| =.+-+|.||+++|..-+
T Consensus 479 ~Kiy~vTT~ta~---DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 479 GKIYDVTTPTAY---DFSPAFDPDGRYLYFLS 507 (668)
T ss_pred CeEEEecCCccc---ccCcccCCCCcEEEEEe
Confidence 988776554333 35668999999987554
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.1e-11 Score=120.18 Aligned_cols=155 Identities=11% Similarity=0.174 Sum_probs=108.6
Q ss_pred EEEEEecCCCcEEEEEeC----------CCcEEEEEccc-ceEEEeecc-cccCeeEEEEcCCCCEEEEE--eCCCcEEE
Q 001248 863 TFLAFHPQDNNIIAIGMD----------DSSIQIYNVRV-DEVKSKLKG-HSKRITGLAFSHALNVLVSS--GADSQLCV 928 (1114)
Q Consensus 863 ~~l~~sp~d~~~la~g~~----------dg~v~iwd~~~-~~~~~~l~~-h~~~V~~l~~s~d~~~l~s~--s~D~~v~i 928 (1114)
..+.|+| .|+.|++-.. -|...+|.+.. +.....+.- ..++|.+++|+|+|+.+|.. ..++.|.+
T Consensus 9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 4577888 6665554332 12355555532 223333332 34579999999999987654 45789999
Q ss_pred EeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEe----CCeEEEEEcCCCceeeeeecCCCCcCeeEEEEC
Q 001248 929 WSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH----ETQLAIFETTKLECVKQWVPRESSAPITHATFS 1004 (1114)
Q Consensus 929 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~----d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s 1004 (1114)
||++.. .+..+.. ..+..+.|+|+|++|++++ .|.|.+||..+.+.+.... ...++.++||
T Consensus 88 yd~~~~------~i~~~~~-----~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~----~~~~t~~~Ws 152 (194)
T PF08662_consen 88 YDVKGK------KIFSFGT-----QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE----HSDATDVEWS 152 (194)
T ss_pred EcCccc------EeEeecC-----CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc----cCcEEEEEEc
Confidence 999731 1122221 2567899999999999953 4679999999888887754 3357899999
Q ss_pred CCCCEEEEEEc------CCeEEEEEcCCCeeeEEeC
Q 001248 1005 CDSQLVYACFL------DATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 1005 ~dg~~l~s~s~------Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
|||++|+++.. |..++||++. |+++.+..
T Consensus 153 PdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 153 PDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred CCCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 99999998874 7889999985 77776544
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-09 Score=107.74 Aligned_cols=237 Identities=15% Similarity=0.215 Sum_probs=157.7
Q ss_pred ceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEE-Ee
Q 001248 361 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV-AY 439 (1114)
Q Consensus 361 v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las-~~ 439 (1114)
...++|+.|..- +++|. |.-.+||+++--+...++.+ ..-.-.+..|-| -.++||. ||
T Consensus 8 ~lsvs~NQD~Sc-Fava~-~~Gfriyn~~P~ke~~~r~~-----------------~~~G~~~veMLf--R~N~laLVGG 66 (346)
T KOG2111|consen 8 TLSVSFNQDHSC-FAVAT-DTGFRIYNCDPFKESASRQF-----------------IDGGFKIVEMLF--RSNYLALVGG 66 (346)
T ss_pred eeEEEEccCCce-EEEEe-cCceEEEecCchhhhhhhcc-----------------ccCchhhhhHhh--hhceEEEecC
Confidence 345999999984 66655 66689999875333221111 000112222222 2344443 33
Q ss_pred CC------CeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCC-CCcceeEeeccc--c
Q 001248 440 SR------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQYIFEGHE--A 510 (1114)
Q Consensus 440 ~d------g~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~h~--~ 510 (1114)
.+ ..|.|||=...+++. ++ .-..+|.+|.+.++- ++..- .+.|+||... +.+.++.+.... .
T Consensus 67 g~~pky~pNkviIWDD~k~~~i~---el-~f~~~I~~V~l~r~r----iVvvl-~~~I~VytF~~n~k~l~~~et~~NPk 137 (346)
T KOG2111|consen 67 GSRPKYPPNKVIIWDDLKERCII---EL-SFNSEIKAVKLRRDR----IVVVL-ENKIYVYTFPDNPKLLHVIETRSNPK 137 (346)
T ss_pred CCCCCCCCceEEEEecccCcEEE---EE-EeccceeeEEEcCCe----EEEEe-cCeEEEEEcCCChhheeeeecccCCC
Confidence 22 469999944444443 33 245689999998763 33332 5789999987 566676665433 2
Q ss_pred CEEEEeeccCCCceEEEEEe-cCCeEEEEEcCCCCC--eeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCC
Q 001248 511 PVYSVCPHHKENIQFIFSTA-LDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 587 (1114)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~-~d~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~ 587 (1114)
...+++ +..+..+|+.-| .-|.|++-|+..... ...+.+|...|.+++++.+|.
T Consensus 138 GlC~~~--~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt--------------------- 194 (346)
T KOG2111|consen 138 GLCSLC--PTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGT--------------------- 194 (346)
T ss_pred ceEeec--CCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc---------------------
Confidence 244443 444445555544 468899999876554 355666666666666555554
Q ss_pred EEEEEeCCCe-EEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 588 RFLAAGDDFS-IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 588 ~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
.+++++..|+ |||||..+|..+..+........|.+++|||++.+|+++|+.|++.|+.++..
T Consensus 195 ~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 195 LVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 7999998887 79999999999999986666678999999999999999999999999998764
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.6e-11 Score=119.90 Aligned_cols=326 Identities=15% Similarity=0.257 Sum_probs=200.7
Q ss_pred CCCCEEEEEeCCCeEEEEE-CCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeecccccc
Q 001248 584 TTKNRFLAAGDDFSIKFWD-MDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY 662 (1114)
Q Consensus 584 ~~~~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 662 (1114)
|..+-+++.++|.++++|- .+.++.-..+. +.....++++.+.++...|++|-..|++.-+.+..........
T Consensus 34 ~~e~gv~~~s~drtvrv~lkrds~q~wpsI~-~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~----- 107 (404)
T KOG1409|consen 34 PKEEGVISVSEDRTVRVWLKRDSGQYWPSIY-HYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFL----- 107 (404)
T ss_pred cCCCCeEEccccceeeeEEeccccccCchhh-hhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchh-----
Confidence 3344599999999999996 44454443333 2224568899999999999999999998877654321111100
Q ss_pred ccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccc
Q 001248 663 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS 742 (1114)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~ 742 (1114)
+.|
T Consensus 108 ----------------------------------------------------------------r~~------------- 110 (404)
T KOG1409|consen 108 ----------------------------------------------------------------KDY------------- 110 (404)
T ss_pred ----------------------------------------------------------------hhh-------------
Confidence 000
Q ss_pred cccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCcc
Q 001248 743 LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP 822 (1114)
Q Consensus 743 ~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~ 822 (1114)
..|...+..+.|+-....+++.+.|..+. |..... |..+.... .....+
T Consensus 111 -----~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e~---------------------~~~lg~Y~----~~~~~t 159 (404)
T KOG1409|consen 111 -----LAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTES---------------------GNRLGGYN----FETPAS 159 (404)
T ss_pred -----hhhhcceeeEEecCCceeEEEeccccceE-EEeecc---------------------CCcccceE----eeccCC
Confidence 12778899999999999999999886553 432211 11110000 011111
Q ss_pred EEEEeeCCCEEEEEe-CCeEEEEEc--CCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccce-EEEee
Q 001248 823 CFALSKNDSYVMSAS-GGKISLFNM--MTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE-VKSKL 898 (1114)
Q Consensus 823 ~v~~s~d~~~l~~~~-dg~i~iwd~--~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~-~~~~l 898 (1114)
++.+.-. +...|. .|.|..-.+ .....+.++.+|...+++++|.+ ...+|.+|..|..|.+||+.-.+ ....+
T Consensus 160 ~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el 236 (404)
T KOG1409|consen 160 ALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYEL 236 (404)
T ss_pred CCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeee
Confidence 1111111 333444 455444333 45667788999999999999999 88999999999999999997654 34678
Q ss_pred cccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccc-------------------------cCCCCCCCC-
Q 001248 899 KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQ-------------------------IPTGRTPTA- 952 (1114)
Q Consensus 899 ~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-------------------------~~~~~~~~~- 952 (1114)
.+|.+.|..+...+--+.|+|++.||.|.+|+++.........+. ....|-..-
T Consensus 237 ~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg 316 (404)
T KOG1409|consen 237 QGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCG 316 (404)
T ss_pred ccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhh
Confidence 999999999999888899999999999999999864332211000 000000000
Q ss_pred CCceEEEEccCCcEEEEEeCCeEEEEEcCC-----CceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCC
Q 001248 953 QSDTRVQFHQDQIHFLVVHETQLAIFETTK-----LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1026 (1114)
Q Consensus 953 ~~i~~v~fspdg~~l~~~~d~~i~iwd~~~-----~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~ 1026 (1114)
..+...+-+.-..+...+..-.+++-|.-- .+.......+.-...|+.+.+..+-.+|++++.|+.|+|||+..
T Consensus 317 ~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 317 KAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred hhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 011111111122222223344455544221 11100111111144799999998989999999999999999764
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.5e-11 Score=116.74 Aligned_cols=183 Identities=17% Similarity=0.281 Sum_probs=124.1
Q ss_pred cCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCc-----ceeEeeccc------------cCEEEEeeccCCCceEEE
Q 001248 465 VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-----KQYIFEGHE------------APVYSVCPHHKENIQFIF 527 (1114)
Q Consensus 465 ~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~h~------------~~v~~~~~~~~~~~~~l~ 527 (1114)
..-|.+|.|...|. +|+||..+|.|.++.-.... ....++.|. ..|..+.|....+...++
T Consensus 25 adiis~vef~~~Ge--~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 25 ADIISAVEFDHYGE--RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hcceeeEEeecccc--eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 45689999999999 89999999999999744322 223444443 457788888888888888
Q ss_pred EEecCCeEEEEEcCCCCCee-----eecCCCCeeEEEEEec----------CCCeEEeeecccceeEEEecCCCCEEEEE
Q 001248 528 STALDGKIKAWLYDNLGSRV-----DYEAPGRWCTTMAYSA----------DGTRTYQGFRKRSLGVVQFDTTKNRFLAA 592 (1114)
Q Consensus 528 s~~~d~~i~~wd~~~~~~~~-----~~~~~~~~v~~~~~s~----------~g~~~~~~~~~~~v~~~~~~~~~~~l~~~ 592 (1114)
..+.|++|++|.+....... ........+.++.... .-++++...+...+..+.++.|+..++++
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA 182 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA 182 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence 89999999999887544332 0111122233332211 11356666677788999999999988775
Q ss_pred eCCCeEEEEECCCcceE-EE--eccCC---CCCCcCeEEEcC-CCCEEEEEeCCCcEEEEEccCC
Q 001248 593 GDDFSIKFWDMDSVQLL-TS--IDADG---GLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 593 ~~dg~i~iwd~~~~~~~-~~--~~~~~---~~~~v~~~~~s~-d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
.|=.|.+|++.--..- .. ++.+. -..-|++..|+| ..+.++..+..|+|++.|++..
T Consensus 183 -DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~ 246 (433)
T KOG1354|consen 183 -DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQS 246 (433)
T ss_pred -cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhh
Confidence 4678999997643211 11 11111 113478889999 4677888888999999998755
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-10 Score=133.03 Aligned_cols=215 Identities=12% Similarity=0.141 Sum_probs=136.7
Q ss_pred CcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCC---CeEEEEEccCCceeee
Q 001248 381 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQ 457 (1114)
Q Consensus 381 g~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d---g~i~iwd~~~~~~~~~ 457 (1114)
.+|.+||...+... .+..|...+.+.+|||||+.|+..+.+ ..|.+||+.+++...
T Consensus 184 ~~l~i~D~~g~~~~--------------------~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~- 242 (433)
T PRK04922 184 YALQVADSDGYNPQ--------------------TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL- 242 (433)
T ss_pred EEEEEECCCCCCce--------------------EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-
Confidence 46889998654332 245567789999999999999988643 469999998876432
Q ss_pred eEeeccccCCeeEEEecCCCCeeEEEEecCCC--CEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEec-CCe
Q 001248 458 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DGK 534 (1114)
Q Consensus 458 ~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-d~~ 534 (1114)
+..+.+...+++|+|||+. ++++.+.++ .|++||+.+++. ..+..+.......+|+ +||+.|+..+. ++.
T Consensus 243 ---l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~s--pDG~~l~f~sd~~g~ 315 (433)
T PRK04922 243 ---VASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWA--PDGKSIYFTSDRGGR 315 (433)
T ss_pred ---eccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEEC--CCCCEEEEEECCCCC
Confidence 3344455668999999996 334545554 599999988764 4555565555666765 45577776653 444
Q ss_pred --EEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCC---CeEEEEECCCcceE
Q 001248 535 --IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---FSIKFWDMDSVQLL 609 (1114)
Q Consensus 535 --i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~ 609 (1114)
|.++|+.+++.. .+......... .+|+|+|++++..+.+ ..|.+||+.+++..
T Consensus 316 ~~iy~~dl~~g~~~-~lt~~g~~~~~---------------------~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 316 PQIYRVAASGGSAE-RLTFQGNYNAR---------------------ASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR 373 (433)
T ss_pred ceEEEEECCCCCeE-EeecCCCCccC---------------------EEECCCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence 555555443321 11111111223 4455555566665433 26999999887755
Q ss_pred EEeccCCCCCCcCeEEEcCCCCEEEEEeCC---CcEEEEEccC
Q 001248 610 TSIDADGGLPASPRIRFNKDGCLLAVSTND---NGIKILATSD 649 (1114)
Q Consensus 610 ~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d---g~i~iwd~~~ 649 (1114)
.+... . ......|+|||++++..+.+ +.|.+++...
T Consensus 374 -~Lt~~-~--~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 374 -TLTPG-S--LDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred -ECCCC-C--CCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 33322 1 24567999999988877653 3466666643
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-10 Score=131.72 Aligned_cols=192 Identities=13% Similarity=0.123 Sum_probs=122.5
Q ss_pred ccCCCCCeeEEEEcCCCCeEEEEeCC---CeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEE
Q 001248 416 VKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 492 (1114)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~d---g~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~ 492 (1114)
+..+...+.+.+|||||+.|+..+.+ ..|.+||+.+++... +....+.+.+.+|+|||+. ++++.+.++...
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~ 265 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQ 265 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCce
Confidence 44567789999999999999987643 459999999886542 3334455678999999995 344667777766
Q ss_pred EEe--CCCCcceeEeeccccCEEEEeeccCCCceEEEEEec-CCeEEEEEcCCCC-CeeeecCCCCeeEEEEEecCCCeE
Q 001248 493 VWD--ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRT 568 (1114)
Q Consensus 493 iwd--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~~ 568 (1114)
||. +..+. ...+..+........|++ ||+.|+..+. ++...+|.++... ....+........
T Consensus 266 Iy~~d~~~~~-~~~lt~~~~~~~~~~wSp--DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~----------- 331 (427)
T PRK02889 266 IYTVNADGSG-LRRLTQSSGIDTEPFFSP--DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNT----------- 331 (427)
T ss_pred EEEEECCCCC-cEECCCCCCCCcCeEEcC--CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcC-----------
Confidence 665 44443 556665655566667654 5566665554 5666777654221 1111111111111
Q ss_pred EeeecccceeEEEecCCCCEEEEEeCCC---eEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCC
Q 001248 569 YQGFRKRSLGVVQFDTTKNRFLAAGDDF---SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN 640 (1114)
Q Consensus 569 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg 640 (1114)
...|+|+|++++..+.++ .|.+||+.+++...... .. ......|+|||+.|+..+.++
T Consensus 332 ----------~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-~~---~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 332 ----------SPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD-TT---RDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred ----------ceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC-CC---CccCceECCCCCEEEEEEecC
Confidence 235666666777665443 69999998887543322 21 236789999999988877654
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.8e-09 Score=115.32 Aligned_cols=204 Identities=12% Similarity=0.104 Sum_probs=124.8
Q ss_pred EEEEeeCCCEEEEEe---CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc-ceEE---
Q 001248 823 CFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVK--- 895 (1114)
Q Consensus 823 ~v~~s~d~~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~-~~~~--- 895 (1114)
.++++|||++|.+.. ++.|.+.|+.+++.+.++.... ...-...+. +..+ +-+.||......+.+ |+..
T Consensus 109 ~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e-~~~~--~~~~Dg~~~~v~~d~~g~~~~~~ 184 (352)
T TIGR02658 109 MTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAN-DTFF--MHCRDGSLAKVGYGTKGNPKIKP 184 (352)
T ss_pred eEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecC-CccE--EEeecCceEEEEecCCCceEEee
Confidence 456777777777654 4678888888877777665422 122222222 2211 112344433333222 1111
Q ss_pred -EeecccccCeeE-EEEcC-CCCEEEEEeCCCcEEEEeCCCCccccccccccCCCC----CCCCCCceEEEEccCCcEEE
Q 001248 896 -SKLKGHSKRITG-LAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR----TPTAQSDTRVQFHQDQIHFL 968 (1114)
Q Consensus 896 -~~l~~h~~~V~~-l~~s~-d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~----~~~~~~i~~v~fspdg~~l~ 968 (1114)
..+.+-..++.. -.|++ ||+++..... |+|.+-|+...+............. ...++....+++++||+.+.
T Consensus 185 ~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly 263 (352)
T TIGR02658 185 TEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY 263 (352)
T ss_pred eeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence 111110111100 04455 8888777666 9999999765443332222222111 11224555699999999998
Q ss_pred EEe---C--------CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCC-EEEEEE-cCCeEEEEEcCCCeeeEEeC
Q 001248 969 VVH---E--------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 969 ~~~---d--------~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~s-~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
+.. . +.|.++|..+++.+..+.. ...+..++++||++ +|++.+ .++.|.|+|..+++.+.++.
T Consensus 264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v---G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 264 LLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL---GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred EEecCCccccccCCCCEEEEEECCCCeEEEEEeC---CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 832 1 4799999999999998875 45899999999999 887776 57889999999999998873
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.5e-10 Score=116.97 Aligned_cols=362 Identities=14% Similarity=0.201 Sum_probs=227.5
Q ss_pred ccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCC-------
Q 001248 416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD------- 488 (1114)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d------- 488 (1114)
+....-++..++|||.|++|++....+ |.+|+...+..+. .+ .| ..|..+.|||.++ +|+|=+..
T Consensus 28 ~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~---~~-~~-~~V~~~~fSP~~k--YL~tw~~~pi~~pe~ 99 (561)
T COG5354 28 FESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLV---RF-RH-PDVKYLDFSPNEK--YLVTWSREPIIEPEI 99 (561)
T ss_pred ccccCcchhheeecCcchheehhhccc-eEEccccchhhee---ee-ec-CCceecccCcccc--eeeeeccCCccChhh
Confidence 333556899999999999999987766 9999988766443 22 23 3699999999999 78876543
Q ss_pred --------CCEEEEeCCCCcceeEeeccccC--EE-EEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeee-cCCCCee
Q 001248 489 --------KTIKVWDATNGAKQYIFEGHEAP--VY-SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-EAPGRWC 556 (1114)
Q Consensus 489 --------~~i~iwd~~~~~~~~~~~~h~~~--v~-~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~v 556 (1114)
..+.+||+.+|..+..+.+...+ .+ -+.|+.+. .+++-. ....+.++++...-....+ ......+
T Consensus 100 e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D--~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr~~gi 176 (561)
T COG5354 100 EISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDD--KYVARV-VGSSLYIHEITDNIEEHPFKNLRPVGI 176 (561)
T ss_pred ccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecc--hhhhhh-ccCeEEEEecCCccccCchhhccccce
Confidence 35999999999999988876655 44 34555443 455444 3456888986221111111 1123457
Q ss_pred EEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEE
Q 001248 557 TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS 636 (1114)
Q Consensus 557 ~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 636 (1114)
....++|.+.. .. .+.|.|.. .+..+.+++|.+..+..+.+-....- .-..+.|.+.|++|++-
T Consensus 177 ~dFsisP~~n~--------~~-la~~tPEk-----~~kpa~~~i~sIp~~s~l~tk~lfk~--~~~qLkW~~~g~~ll~l 240 (561)
T COG5354 177 LDFSISPEGNH--------DE-LAYWTPEK-----LNKPAMVRILSIPKNSVLVTKNLFKV--SGVQLKWQVLGKYLLVL 240 (561)
T ss_pred eeEEecCCCCC--------ce-EEEEcccc-----CCCCcEEEEEEccCCCeeeeeeeEee--cccEEEEecCCceEEEE
Confidence 77778877531 11 22233321 45788999999987766655433211 12468888988887653
Q ss_pred eCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcc
Q 001248 637 TNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKP 716 (1114)
Q Consensus 637 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1114)
..- +..+++...
T Consensus 241 ~~t------~~ksnKsyf-------------------------------------------------------------- 252 (561)
T COG5354 241 VMT------HTKSNKSYF-------------------------------------------------------------- 252 (561)
T ss_pred EEE------eeeccccee--------------------------------------------------------------
Confidence 211 111111000
Q ss_pred cccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecc--cCceEEEEeecccccCCCCCcccc
Q 001248 717 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALA--SNAIHLLWKWQRTERNSSGKATAS 794 (1114)
Q Consensus 717 l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~ 794 (1114)
....+.++++.....+... .-.+.|...+|.|.++.+++.+ ....+.++++...
T Consensus 253 -----gesnLyl~~~~e~~i~V~~--------~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N----------- 308 (561)
T COG5354 253 -----GESNLYLLRITERSIPVEK--------DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN----------- 308 (561)
T ss_pred -----ccceEEEEeecccccceec--------cccccceeeeecccCCceeEEecccccceeecccccc-----------
Confidence 0123444444422111111 1457899999999998877655 4566777665421
Q ss_pred ccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-C---CeEEEEEcCCCcccc-ccCCCCCCeEEEEEec
Q 001248 795 VAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-G---GKISLFNMMTFKTMA-TFMPPPPAATFLAFHP 869 (1114)
Q Consensus 795 ~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d---g~i~iwd~~~~~~~~-~~~~~~~~i~~l~~sp 869 (1114)
+... .....-..+.|+|.+++++.++ | |.+.+||..+.-.+. .+.+ ...+-+.|+|
T Consensus 309 ------------l~~~-----~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~--~n~s~~~wsp 369 (561)
T COG5354 309 ------------LRFY-----FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG--LNTSYCDWSP 369 (561)
T ss_pred ------------eEEe-----cCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeec--CCceEeeccC
Confidence 1111 1334445678999999999877 5 779999987644433 4443 3356678999
Q ss_pred CCCcEEEEEe------CCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCC
Q 001248 870 QDNNIIAIGM------DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS 924 (1114)
Q Consensus 870 ~d~~~la~g~------~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~ 924 (1114)
|+.++.+.. .|..|.|||+...... ..+.+.|-|.+++.-+.+.+.
T Consensus 370 -d~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f--------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 370 -DGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF--------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred -CceEEEecCCCcccccCcceEEEEecCchhh--------hhhhccccCCcccceeeccCC
Confidence 898887764 4678999998654321 567788988888776666554
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-09 Score=118.86 Aligned_cols=476 Identities=13% Similarity=0.122 Sum_probs=270.3
Q ss_pred cCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCc---------------ceeEeeccccCEEEEeeccCCCceEEEEE
Q 001248 465 VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA---------------KQYIFEGHEAPVYSVCPHHKENIQFIFST 529 (1114)
Q Consensus 465 ~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~---------------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~ 529 (1114)
.....|++|..... +++.||.||.++|-.+.+.. .-+++.||.+.|.-+.|+... +.|-+.
T Consensus 14 nvkL~c~~WNke~g--yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~--QKLTtS 89 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESG--YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN--QKLTTS 89 (1189)
T ss_pred CceEEEEEEcccCC--eEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc--cccccc
Confidence 34578999999988 89999999999999876431 124678999999999986543 688899
Q ss_pred ecCCeEEEEEcCCCCCeeee--cCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcc
Q 001248 530 ALDGKIKAWLYDNLGSRVDY--EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 607 (1114)
Q Consensus 530 ~~d~~i~~wd~~~~~~~~~~--~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 607 (1114)
..+|.|.+|-+-.+.-.... ......|.+++|..||. .+....+||.|.+=.++..+
T Consensus 90 Dt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~---------------------kIcIvYeDGavIVGsvdGNR 148 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGT---------------------KICIVYEDGAVIVGSVDGNR 148 (1189)
T ss_pred CCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCc---------------------EEEEEEccCCEEEEeeccce
Confidence 99999999987654432221 11233456666666665 44444455544443332211
Q ss_pred eEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccc-cccccccCCCCCCCCccchhhhhhhhc
Q 001248 608 LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN-LAYDASRTSENSKPTISPISAAAAAAA 686 (1114)
Q Consensus 608 ~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1114)
+.--...+ .....+.|++|.+.+..+-..|.+.++|........-.... -+... .|+
T Consensus 149 -IwgKeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg---------~~s---------- 206 (1189)
T KOG2041|consen 149 -IWGKELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTG---------IFS---------- 206 (1189)
T ss_pred -ecchhcch--heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeee---------eec----------
Confidence 11111111 12456899999999999999999999997654221111100 00000 011
Q ss_pred cccccccccccccccCCCCCC-ccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcce
Q 001248 687 TSAGLADRAASMVSIPGMNGD-VRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA 765 (1114)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 765 (1114)
.+...+.....+.+. ....|+...++.+-..|.+.+-.-.+...+.... ..-.+..+.|+++|..
T Consensus 207 ------~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d--------tgm~~vgakWnh~G~v 272 (1189)
T KOG2041|consen 207 ------NFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD--------TGMKIVGAKWNHNGAV 272 (1189)
T ss_pred ------CCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe--------cccEeecceecCCCcE
Confidence 011111112222222 2334577888888888888887766544443332 2357889999999999
Q ss_pred eeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEeCCeEEEEE
Q 001248 766 ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFN 845 (1114)
Q Consensus 766 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~dg~i~iwd 845 (1114)
|++++.+..-.- ...+..++++.+-....-. ++. ....|++++|-..|-.+|.+-|+.|.+=+
T Consensus 273 LAvcG~~~da~~-------------~~d~n~v~Fysp~G~i~gt--lkv--pg~~It~lsWEg~gLriA~Avdsfiyfan 335 (1189)
T KOG2041|consen 273 LAVCGNDSDADE-------------PTDSNKVHFYSPYGHIVGT--LKV--PGSCITGLSWEGTGLRIAIAVDSFIYFAN 335 (1189)
T ss_pred EEEccCcccccC-------------ccccceEEEeccchhheEE--Eec--CCceeeeeEEcCCceEEEEEecceEEEEe
Confidence 998887632100 0001122333332211111 111 56789999999999999999999998877
Q ss_pred cCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCc
Q 001248 846 MMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ 925 (1114)
Q Consensus 846 ~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~ 925 (1114)
+.-.-. .-.....|.-+---+ +. -.-.|.+||..+.+...+-..| ..+++|+.+.-.|+.-..|+.
T Consensus 336 IRP~yk---Wgy~e~TvVy~y~~~-e~-------p~y~i~Fwdtk~nek~vK~V~~---~~~~a~~~ehCvL~~~~d~~~ 401 (1189)
T KOG2041|consen 336 IRPEYK---WGYIEETVVYVYQKE-EL-------PQYGIMFWDTKTNEKTVKTVTH---FENMAFYREHCVLINRQDDGV 401 (1189)
T ss_pred ecccce---EEEeeeEEEEEEccC-CC-------cceEEEEEecccChhhhhhhcc---eeehheecccEEEEeccccCC
Confidence 753110 000011111110001 10 1124788998886543222223 346788888778888888887
Q ss_pred EEEEeC-CCCccccccccccCCCCCCC--CCCceEEEEccCCcEEEEEeCCeEEEEEcCCCcee----------------
Q 001248 926 LCVWSS-DGWEKQKNRFLQIPTGRTPT--AQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECV---------------- 986 (1114)
Q Consensus 926 v~iwd~-~~~~~~~~~~~~~~~~~~~~--~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~---------------- 986 (1114)
+.-++. ++....-...+...-|.... ...|.-.-..-+|.+++.++...+.+|.....+..
T Consensus 402 i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rkegr~h~ 481 (1189)
T KOG2041|consen 402 IPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRKEGRFHG 481 (1189)
T ss_pred CcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhhhhcccccccC
Confidence 776632 11111000001111111000 01222223334677777788888888875332211
Q ss_pred ---------eeee-----cCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeC
Q 001248 987 ---------KQWV-----PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 987 ---------~~~~-----~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
+.+. ..|..++|.+++.| .++|..+-..|.|.-|.+.+.-+..+..
T Consensus 482 Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n~y~ 541 (1189)
T KOG2041|consen 482 DDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTNSYP 541 (1189)
T ss_pred CCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeeeccc
Confidence 0011 11335677777764 5688889899999999999887765543
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.4e-09 Score=108.00 Aligned_cols=282 Identities=9% Similarity=0.091 Sum_probs=183.5
Q ss_pred CCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccC---ceEEEEeecccccCCCCCccccccccc
Q 001248 723 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN---AIHLLWKWQRTERNSSGKATASVAPQL 799 (1114)
Q Consensus 723 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~ 799 (1114)
+..|.+|++.+.........+ .......+-++++|+.+.|.++..+ |.|..|.+.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~----v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD------------------ 72 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQL----VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRID------------------ 72 (346)
T ss_pred CCceEEEEEeCcccccchhhh----ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEc------------------
Confidence 578999999843322111111 2256778899999999988877664 566666543
Q ss_pred cCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe--CCeEEEEEcCC-Cccccc--cCCCCCC----------eEE
Q 001248 800 WQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMT-FKTMAT--FMPPPPA----------ATF 864 (1114)
Q Consensus 800 w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--dg~i~iwd~~~-~~~~~~--~~~~~~~----------i~~ 864 (1114)
..+|.+...-... ....+.+.++++++|++++++. .|.|.++-+.. |..... +..|.+. +..
T Consensus 73 --~~~G~Lt~ln~~~-~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~ 149 (346)
T COG2706 73 --PDDGRLTFLNRQT-LPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHS 149 (346)
T ss_pred --CCCCeEEEeeccc-cCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccce
Confidence 3334322110000 0233448899999999999998 69999999965 333221 1123322 788
Q ss_pred EEEecCCCcEEEEEe-CCCcEEEEEcccceEEEeec---ccccCeeEEEEcCCCCEEEEEe-CCCcEEEEeCCCC--ccc
Q 001248 865 LAFHPQDNNIIAIGM-DDSSIQIYNVRVDEVKSKLK---GHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGW--EKQ 937 (1114)
Q Consensus 865 l~~sp~d~~~la~g~-~dg~v~iwd~~~~~~~~~l~---~h~~~V~~l~~s~d~~~l~s~s-~D~~v~iwd~~~~--~~~ 937 (1114)
..|.| ++++|++.+ .--.|.+|++..|++...-. .-...-..|+|+|++++....+ -+++|.+|..+.. +..
T Consensus 150 a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~ 228 (346)
T COG2706 150 ANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFE 228 (346)
T ss_pred eeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEE
Confidence 99999 888887765 23379999999876542211 1233457899999999987665 5899999999873 333
Q ss_pred cccccccCCCCCCCCCCceEEEEccCCcEEEEEe--CCeEEEEEcCCC--ceeeeeecCCCCcCeeEEEECCCCCEEEEE
Q 001248 938 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH--ETQLAIFETTKL--ECVKQWVPRESSAPITHATFSCDSQLVYAC 1013 (1114)
Q Consensus 938 ~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~--d~~i~iwd~~~~--~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~ 1013 (1114)
....+...+...........+.+++||++|.++. ...|.+|.+... +....-....+........|+++|++|+++
T Consensus 229 ~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa 308 (346)
T COG2706 229 ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAA 308 (346)
T ss_pred EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEE
Confidence 3333333333344445668899999999999973 447888876543 222111122345568899999999999998
Q ss_pred EcCC-eEEEEEc--CCCeee
Q 001248 1014 FLDA-TVCVFSA--ANLKLR 1030 (1114)
Q Consensus 1014 s~Dg-~I~vwd~--~~~~~~ 1030 (1114)
+.++ .|.||.. .+|++-
T Consensus 309 ~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 309 NQKSDNITVFERDKETGRLT 328 (346)
T ss_pred ccCCCcEEEEEEcCCCceEE
Confidence 8764 5888876 455554
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.8e-11 Score=119.79 Aligned_cols=256 Identities=12% Similarity=0.088 Sum_probs=176.9
Q ss_pred ccCCCCceEEEEcCCCCeEEEEEe-cCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCC
Q 001248 355 LNQGSSPMSMDFHPVQQTLLLVGT-NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 433 (1114)
Q Consensus 355 ~~h~~~v~~v~~spdg~~ll~tg~-~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 433 (1114)
+.....|+.++|--|++.=+..+. .+..+.....+....... +||+. ........|..++.. ..
T Consensus 52 ~~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~---------~~~l~~~~I~gl~~~--dg 116 (412)
T KOG3881|consen 52 VDELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAK---------TVSLGTKSIKGLKLA--DG 116 (412)
T ss_pred cchhhhhhhheeecCCceeEeeccccCcccccccccCCccccc----ccccc---------ccccccccccchhhc--CC
Confidence 345677888888887765344444 566666666665544332 12222 234455677777765 34
Q ss_pred eEEEEeCCCeEEEEEccCCceee-eeEeeccccCCeeEEEecCCCCeeEEEEecCC--CCEEEEeCCCCcceeEeec---
Q 001248 434 LFGVAYSRHIVQIYSYHGGDEVR-QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD--KTIKVWDATNGAKQYIFEG--- 507 (1114)
Q Consensus 434 ~las~~~dg~i~iwd~~~~~~~~-~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~--- 507 (1114)
.|++|-.+|.+.+|..+.+..-. ....+..+ ..+..|.-++...+ ++++||.. ..++|||++..+.+.+-+.
T Consensus 117 ~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpn 194 (412)
T KOG3881|consen 117 TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPN 194 (412)
T ss_pred EEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCC
Confidence 66777889999999998543110 11123223 56778888887776 67789988 8899999998866554321
Q ss_pred ----cc--cCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCe-eeecCCCCeeEEEEEecCCCeEEeeecccceeEE
Q 001248 508 ----HE--APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR-VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 580 (1114)
Q Consensus 508 ----h~--~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~ 580 (1114)
-. -+++++.|.+......+++++.-+.+++||.+..... ..+..... .+.++
T Consensus 195 D~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~---------------------~is~~ 253 (412)
T KOG3881|consen 195 DRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLEN---------------------PISST 253 (412)
T ss_pred ccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccC---------------------cceee
Confidence 11 2345566655534578999999999999999865432 23333333 44455
Q ss_pred EecCCCCEEEEEeCCCeEEEEECCCcceEEE-eccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 581 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTS-IDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 581 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
...|.++++++|...+.+..||.+.++.... +.+. .+.++++..+|.+.++++++-|..+||+|+.+.
T Consensus 254 ~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~--tGsirsih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 254 GLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI--TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred eecCCCcEEEEecccchhheecccCceeeccccCCc--cCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence 5556666899999999999999999988777 5544 457999999999999999999999999999885
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.6e-07 Score=109.78 Aligned_cols=471 Identities=13% Similarity=0.121 Sum_probs=247.6
Q ss_pred CCCCCeeEEEEcCCCCeEEEEeCCCeEEEE----EccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEE
Q 001248 418 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIY----SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 493 (1114)
Q Consensus 418 ~h~~~V~~l~~spdg~~las~~~dg~i~iw----d~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~i 493 (1114)
...+.|.++.+-+|...|+.+..+|.|.+. +..+.. +. ....-...|.+++||||+.. |+..+.++++.+
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E---~VG~vd~GI~a~~WSPD~El--la~vT~~~~l~~ 146 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IE---IVGSVDSGILAASWSPDEEL--LALVTGEGNLLL 146 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eE---EEEEEcCcEEEEEECCCcCE--EEEEeCCCEEEE
Confidence 345689999999999999999999999999 544432 22 23345678999999999994 554444666655
Q ss_pred Ee----CCC-------------------CcceeEeecc------------------------ccCEEEEeeccCCCceEE
Q 001248 494 WD----ATN-------------------GAKQYIFEGH------------------------EAPVYSVCPHHKENIQFI 526 (1114)
Q Consensus 494 wd----~~~-------------------~~~~~~~~~h------------------------~~~v~~~~~~~~~~~~~l 526 (1114)
-+ +-. |+.-..|+|- ...-..++ ..+||.++
T Consensus 147 mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~IS--WRGDG~yF 224 (928)
T PF04762_consen 147 MTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRIS--WRGDGEYF 224 (928)
T ss_pred EeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEE--ECCCCcEE
Confidence 43 100 1111112111 11122334 46778888
Q ss_pred EEEec---C---CeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeC---CCe
Q 001248 527 FSTAL---D---GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD---DFS 597 (1114)
Q Consensus 527 ~s~~~---d---~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~ 597 (1114)
++.+. . +.+++|+-+ +. +... ..++. +--..++|-|.|+++++... ...
T Consensus 225 AVss~~~~~~~~R~iRVy~Re-G~-L~st---SE~v~-----------------gLe~~l~WrPsG~lIA~~q~~~~~~~ 282 (928)
T PF04762_consen 225 AVSSVEPETGSRRVIRVYSRE-GE-LQST---SEPVD-----------------GLEGALSWRPSGNLIASSQRLPDRHD 282 (928)
T ss_pred EEEEEEcCCCceeEEEEECCC-ce-EEec---cccCC-----------------CccCCccCCCCCCEEEEEEEcCCCcE
Confidence 88765 2 468888654 11 1111 11111 11224566677777777553 466
Q ss_pred EEEEECCCcceEEEeccC--CCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCc
Q 001248 598 IKFWDMDSVQLLTSIDAD--GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTI 675 (1114)
Q Consensus 598 i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (1114)
|.+|.- +|..-..|... .....|..+.|++|+..|++...|. |.+|-..+-.-.++.--....... .
T Consensus 283 VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~------~--- 351 (928)
T PF04762_consen 283 VVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSES------V--- 351 (928)
T ss_pred EEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCC------C---
Confidence 777774 44444444332 2345689999999999999987655 999988776322221100000000 0
Q ss_pred cchhhhhhhhccccccccccccccccCCCCCCccccC-CCcccccccCCCceeEEEeccCCCCccccccccCccccccce
Q 001248 676 SPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLA-DVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 754 (1114)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i 754 (1114)
......+ +...+.....++.+..++..-
T Consensus 352 ------------------------------~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~--------------------- 380 (928)
T PF04762_consen 352 ------------------------------NFVKWDPEKPLRLHVLTSNGQYEIYDFAW--------------------- 380 (928)
T ss_pred ------------------------------CceEECCCCCCEEEEEecCCcEEEEEEEE---------------------
Confidence 0000001 122233333334443333221
Q ss_pred EEEEEc----cCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCC
Q 001248 755 SRLIFT----NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 830 (1114)
Q Consensus 755 ~~l~~s----~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~ 830 (1114)
.+..+ |+..-.++.-+...+.+-.+......|. +-...+ .....|.+++|++++
T Consensus 381 -~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPP------------------Ms~~~l---~~~~~v~~vaf~~~~ 438 (928)
T PF04762_consen 381 -DVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPP------------------MSSYEL---ELPSPVNDVAFSPSN 438 (928)
T ss_pred -EEEecCCCCccCceEEEEEeCCeEEEecccccCCCch------------------HhceEE---cCCCCcEEEEEeCCC
Confidence 11111 1111122222223333332221111000 000001 146789999999999
Q ss_pred CEEEEEe-CCeEEEEEcCCCccc--------cccC----------CCCCCeEEEEEecCCCcEEEEEeCC---CcEEEEE
Q 001248 831 SYVMSAS-GGKISLFNMMTFKTM--------ATFM----------PPPPAATFLAFHPQDNNIIAIGMDD---SSIQIYN 888 (1114)
Q Consensus 831 ~~l~~~~-dg~i~iwd~~~~~~~--------~~~~----------~~~~~i~~l~~sp~d~~~la~g~~d---g~v~iwd 888 (1114)
..+++-. ||.|.+|........ ..+. .....+..++|.. +..+++....+ ..+.+++
T Consensus 439 ~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~ 517 (928)
T PF04762_consen 439 SRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLN-DDTLLVLSDSDSNQSKIVLVD 517 (928)
T ss_pred CeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeC-CCEEEEEEecCcccceEEEEE
Confidence 8666665 999999985432211 1111 1234578888887 56666665554 5788888
Q ss_pred cccce---EEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCc
Q 001248 889 VRVDE---VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI 965 (1114)
Q Consensus 889 ~~~~~---~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~ 965 (1114)
+...+ .+.....-.+.+..+...++...++.-..||.+...+........ .+.+.. ..-..+....+..
T Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~---~~fp~~-----c~~~~~~~~~~~~ 589 (928)
T PF04762_consen 518 IDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELSQI---VKFPQP-----CPWMEVCQINGSE 589 (928)
T ss_pred eccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCCcccc---ccCCCC-----CcEEEEEEECCcc
Confidence 74332 233333334556666666665557777789988866665532211 111110 1112333333332
Q ss_pred --EEEE--EeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcC
Q 001248 966 --HFLV--VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA 1025 (1114)
Q Consensus 966 --~l~~--~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~ 1025 (1114)
.++. +..+.+++ ++..+ ...+++.++ .+.+|+.......+++.++.
T Consensus 590 ~~~~~~GLs~~~~Ly~----n~~~l--------a~~~tSF~v--~~~~Ll~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 590 DKRVLFGLSSNGRLYA----NSRLL--------ASNCTSFAV--TDSFLLFTTTQHTLKFVHLN 639 (928)
T ss_pred ceeEEEEECCCCEEEE----CCEEE--------ecCCceEEE--EcCEEEEEecCceEEEEECc
Confidence 2333 34455543 12221 346777777 45577777778889999988
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.7e-10 Score=122.11 Aligned_cols=252 Identities=14% Similarity=0.217 Sum_probs=162.4
Q ss_pred CCCccEEEEeeCCCEEEEEeC-----CeEEEEEcCCC--c--cccccCCCCCCeEEEEEecCCCcEEEEEe-CCCcEEEE
Q 001248 818 EEAVPCFALSKNDSYVMSASG-----GKISLFNMMTF--K--TMATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIY 887 (1114)
Q Consensus 818 ~~~v~~v~~s~d~~~l~~~~d-----g~i~iwd~~~~--~--~~~~~~~~~~~i~~l~~sp~d~~~la~g~-~dg~v~iw 887 (1114)
......++++|++++|.+... +.|..|++... + .+............++++| ++++|+++. .+|.|.++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~-~g~~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDP-DGRFLYVANYGGGSVSVF 114 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECT-TSSEEEEEETTTTEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEec-CCCEEEEEEccCCeEEEE
Confidence 344567899999999998862 57888888753 2 2233332344567899999 777777765 68999999
Q ss_pred Eccc-ceEEEe---ec----------ccccCeeEEEEcCCCCEEEEEeC-CCcEEEEeCCCCc--cccccccccCCCCCC
Q 001248 888 NVRV-DEVKSK---LK----------GHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGWE--KQKNRFLQIPTGRTP 950 (1114)
Q Consensus 888 d~~~-~~~~~~---l~----------~h~~~V~~l~~s~d~~~l~s~s~-D~~v~iwd~~~~~--~~~~~~~~~~~~~~~ 950 (1114)
++.. |.+... +. .-.....++.|+|||++|++... ...|.+|+++... ......+....+
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G--- 191 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG--- 191 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT---
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC---
Confidence 9987 443322 11 11234678999999998887642 3469999998754 222222333333
Q ss_pred CCCCceEEEEccCCcEEEEE--eCCeEEEEEcC--CCce--eeeeecC--CC--CcCeeEEEECCCCCEEEEEEc-CCeE
Q 001248 951 TAQSDTRVQFHQDQIHFLVV--HETQLAIFETT--KLEC--VKQWVPR--ES--SAPITHATFSCDSQLVYACFL-DATV 1019 (1114)
Q Consensus 951 ~~~~i~~v~fspdg~~l~~~--~d~~i~iwd~~--~~~~--~~~~~~~--~h--~~~v~~l~~s~dg~~l~s~s~-Dg~I 1019 (1114)
...+.++|+|||+++.+. .++.|.+|++. ++.. +..+..- +. ......|+++|||++|+++.. +..|
T Consensus 192 --~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI 269 (345)
T PF10282_consen 192 --SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI 269 (345)
T ss_dssp --SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred --CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEE
Confidence 356999999999999884 56789999988 4422 2222211 11 226889999999999987764 5689
Q ss_pred EEEEcC--CCeeeEEeCCCcccCC-CCCCCCccceEEEecCCCCCeEEEEe-CCCcEEEEeccCCCCccc
Q 001248 1020 CVFSAA--NLKLRCRINPSAYLPA-GVSSSNVHPLVIAAHPQEPNEFALGL-SDGGVHVFEPLESEGKWG 1085 (1114)
Q Consensus 1020 ~vwd~~--~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~d~~~l~s~~-~Dg~v~vW~i~~~~~~~~ 1085 (1114)
.+|+++ +|++.. +. ..+. | ..|..++++| |+++|+++. .++.|.+|++....+.|.
T Consensus 270 ~vf~~d~~~g~l~~-~~---~~~~~G-----~~Pr~~~~s~-~g~~l~Va~~~s~~v~vf~~d~~tG~l~ 329 (345)
T PF10282_consen 270 SVFDLDPATGTLTL-VQ---TVPTGG-----KFPRHFAFSP-DGRYLYVANQDSNTVSVFDIDPDTGKLT 329 (345)
T ss_dssp EEEEECTTTTTEEE-EE---EEEESS-----SSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred EEEEEecCCCceEE-EE---EEeCCC-----CCccEEEEeC-CCCEEEEEecCCCeEEEEEEeCCCCcEE
Confidence 999993 344332 21 1111 2 4567899999 578877766 667999999865544443
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.7e-10 Score=117.29 Aligned_cols=181 Identities=14% Similarity=0.197 Sum_probs=134.6
Q ss_pred EEEccCccee-eecccC--ceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeC--CC
Q 001248 757 LIFTNSGNAI-LALASN--AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN--DS 831 (1114)
Q Consensus 757 l~~s~~~~~l-~~~~~d--g~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d--~~ 831 (1114)
+.-++....+ ++|+.. ..+.|||+.... ++|....-. ...-+..-.-.++.+.|-+. ..
T Consensus 154 ~r~~~~~p~Iva~GGke~~n~lkiwdle~~~-------------qiw~aKNvp---nD~L~LrVPvW~tdi~Fl~g~~~~ 217 (412)
T KOG3881|consen 154 VRQTDTDPYIVATGGKENINELKIWDLEQSK-------------QIWSAKNVP---NDRLGLRVPVWITDIRFLEGSPNY 217 (412)
T ss_pred eccCCCCCceEecCchhcccceeeeecccce-------------eeeeccCCC---CccccceeeeeeccceecCCCCCc
Confidence 3333433334 447777 789999987542 355443221 11111113445677888777 77
Q ss_pred EEEEEe-CCeEEEEEcCCCc-cccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEe-ecccccCeeEE
Q 001248 832 YVMSAS-GGKISLFNMMTFK-TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK-LKGHSKRITGL 908 (1114)
Q Consensus 832 ~l~~~~-dg~i~iwd~~~~~-~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~-l~~h~~~V~~l 908 (1114)
.||++. -+.+++||...+. ++..+.-...+++++...| +++++.+|..-|.+..||..+++++.. +.+-.+.|++|
T Consensus 218 ~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsi 296 (412)
T KOG3881|consen 218 KFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSI 296 (412)
T ss_pred eEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC-CCcEEEEecccchhheecccCceeeccccCCccCCcceE
Confidence 889888 7999999998654 5566777788999999999 999999999999999999999998877 89999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccC
Q 001248 909 AFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 963 (1114)
Q Consensus 909 ~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspd 963 (1114)
..+|.+++||++|-|+.|+|+|+++.+.....++. ..++++.+.++
T Consensus 297 h~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvK---------s~lt~il~~~~ 342 (412)
T KOG3881|consen 297 HCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVK---------SRLTFILLRDD 342 (412)
T ss_pred EEcCCCceEEeeccceeEEEeecccchhhhhhhhh---------ccccEEEecCC
Confidence 99999999999999999999999996554433332 13466666554
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.1e-10 Score=128.64 Aligned_cols=223 Identities=11% Similarity=0.086 Sum_probs=132.6
Q ss_pred CCCCceEEEEcCCCCe--EEEEEecCC--cEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCC
Q 001248 357 QGSSPMSMDFHPVQQT--LLLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~--ll~tg~~dg--~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1114)
....+..-+|||||+. ++++...+| .|.+.++.+|+... +....+.....+|||||
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--------------------lt~~~g~~~~p~wSPDG 242 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--------------------ILALQGNQLMPTFSPRK 242 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--------------------eecCCCCccceEECCCC
Confidence 5566788999999986 333544444 58888988876543 22233345678999999
Q ss_pred CeEEEEeC-----CCeEEEEEccCCc--eeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE--eCCC-Ccce
Q 001248 433 SLFGVAYS-----RHIVQIYSYHGGD--EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW--DATN-GAKQ 502 (1114)
Q Consensus 433 ~~las~~~-----dg~i~iwd~~~~~--~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw--d~~~-~~~~ 502 (1114)
+.||..+. +..+.+|++.++. ...+ ...++.+.....+|+|||+.+ +++...++...+| ++.. +...
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~--lt~~~~~~~~~p~wSPDG~~L-af~s~~~g~~~ly~~~~~~~g~~~ 319 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRR--LLNEAFGTQGNPSFSPDGTRL-VFVSNKDGRPRIYIMQIDPEGQSP 319 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceE--eecCCCCCcCCeEECCCCCEE-EEEECCCCCceEEEEECcccccce
Confidence 99987653 2234557776532 1221 122233345678999999962 3344456655555 4432 3334
Q ss_pred eEeeccccCEEEEeeccCCCceEEEEEecC---CeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeE
Q 001248 503 YIFEGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 579 (1114)
Q Consensus 503 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~ 579 (1114)
..+..+...+....|++ ||+.|+..+.+ ..|.+||+.+++.... ......+....|+|||+
T Consensus 320 ~~lt~~~~~~~~p~wSP--DG~~Laf~~~~~g~~~I~v~dl~~g~~~~L-t~~~~~~~~p~wSpDG~------------- 383 (428)
T PRK01029 320 RLLTKKYRNSSCPAWSP--DGKKIAFCSVIKGVRQICVYDLATGRDYQL-TTSPENKESPSWAIDSL------------- 383 (428)
T ss_pred EEeccCCCCccceeECC--CCCEEEEEEcCCCCcEEEEEECCCCCeEEc-cCCCCCccceEECCCCC-------------
Confidence 55555555666777755 55677665543 3688999887654332 22222344455555554
Q ss_pred EEecCCCCEEEEEe---CCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCC
Q 001248 580 VQFDTTKNRFLAAG---DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD 629 (1114)
Q Consensus 580 ~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d 629 (1114)
.|+..+ ....|++||+.+++........+ .+...+|+|-
T Consensus 384 --------~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g---~~~~p~Ws~~ 425 (428)
T PRK01029 384 --------HLVYSAGNSNESELYLISLITKKTRKIVIGSG---EKRFPSWGAF 425 (428)
T ss_pred --------EEEEEECCCCCceEEEEECCCCCEEEeecCCC---cccCceecCC
Confidence 444332 34678999998877655544322 3566788874
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.1e-09 Score=109.85 Aligned_cols=294 Identities=12% Similarity=0.124 Sum_probs=187.9
Q ss_pred cceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCcc-EEEEeeCC
Q 001248 752 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP-CFALSKND 830 (1114)
Q Consensus 752 ~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~-~v~~s~d~ 830 (1114)
..|..+.|+|++++|.+-...+.+ +.. .+..+... ...+.+||..+|.++...... ....... -+.|+.|.
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~---~pe-~e~sp~~~---~n~~~vwd~~sg~iv~sf~~~-~q~~~~Wp~~k~s~~D 143 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPII---EPE-IEISPFTS---KNNVFVWDIASGMIVFSFNGI-SQPYLGWPVLKFSIDD 143 (561)
T ss_pred CCceecccCcccceeeeeccCCcc---Chh-hccCCccc---cCceeEEeccCceeEeecccc-CCcccccceeeeeecc
Confidence 457778888999888876665443 100 01111111 014678888888876542211 1111133 67899999
Q ss_pred CEEEEEeCCeEEEEEcCCCccc-cccCCC-CCCeEEEEEecC-CCcEEEE-----EeCCCcEEEEEcccceEEEeecccc
Q 001248 831 SYVMSASGGKISLFNMMTFKTM-ATFMPP-PPAATFLAFHPQ-DNNIIAI-----GMDDSSIQIYNVRVDEVKSKLKGHS 902 (1114)
Q Consensus 831 ~~l~~~~dg~i~iwd~~~~~~~-~~~~~~-~~~i~~l~~sp~-d~~~la~-----g~~dg~v~iwd~~~~~~~~~l~~h~ 902 (1114)
+++|-.....+.|+++ +.... ..+... ...|+...|+|. ++..||. +..++++++|.+..++.+....-..
T Consensus 144 ~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk 222 (561)
T COG5354 144 KYVARVVGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFK 222 (561)
T ss_pred hhhhhhccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEe
Confidence 9988777788999997 33221 111111 356888999994 2334553 4577899999998776654433222
Q ss_pred cCeeEEEEcCCCCEEEEEe-----------CCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-E
Q 001248 903 KRITGLAFSHALNVLVSSG-----------ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V 970 (1114)
Q Consensus 903 ~~V~~l~~s~d~~~l~s~s-----------~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~ 970 (1114)
..=..+.|.+.|++|..-- ....+.|+++...... ... ...+.|...+|.|+++.+++ +
T Consensus 223 ~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~------V~~---~~~~pVhdf~W~p~S~~F~vi~ 293 (561)
T COG5354 223 VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIP------VEK---DLKDPVHDFTWEPLSSRFAVIS 293 (561)
T ss_pred ecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccc------eec---cccccceeeeecccCCceeEEe
Confidence 2234688888888766421 1245788887742221 110 11258999999999998887 2
Q ss_pred --eCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcC---CeEEEEEcCCCeeeE-EeCCCcccCCCCC
Q 001248 971 --HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD---ATVCVFSAANLKLRC-RINPSAYLPAGVS 1044 (1114)
Q Consensus 971 --~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D---g~I~vwd~~~~~~~~-~~~~~~~~~~~~~ 1044 (1114)
.+..+.++|++.. ....+. ...=..+.|||.+++++.++-| |.|-+||........ .+. +
T Consensus 294 g~~pa~~s~~~lr~N-l~~~~P----e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~-------~-- 359 (561)
T COG5354 294 GYMPASVSVFDLRGN-LRFYFP----EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFN-------G-- 359 (561)
T ss_pred cccccceeecccccc-eEEecC----CcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEee-------c--
Confidence 5778999999866 333322 3445678899999999887765 679999987665554 444 2
Q ss_pred CCCccceEEEecCCCCCeEEEEe------CCCcEEEEeccCCC
Q 001248 1045 SSNVHPLVIAAHPQEPNEFALGL------SDGGVHVFEPLESE 1081 (1114)
Q Consensus 1045 ~~~v~~~~~~~~~~d~~~l~s~~------~Dg~v~vW~i~~~~ 1081 (1114)
.....+.|+| |++++.+.. .|..+.+|++...+
T Consensus 360 ---~n~s~~~wsp-d~qF~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 360 ---LNTSYCDWSP-DGQFYDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred ---CCceEeeccC-CceEEEecCCCcccccCcceEEEEecCch
Confidence 1222578999 678776654 47899999998876
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-08 Score=104.38 Aligned_cols=255 Identities=13% Similarity=0.205 Sum_probs=172.3
Q ss_pred CCCCccEEEEeeCCCEEEEEe----CCeEEEEEcCC--Cccc--cccCCCCCCeEEEEEecCCCcEEEEEe-CCCcEEEE
Q 001248 817 PEEAVPCFALSKNDSYVMSAS----GGKISLFNMMT--FKTM--ATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIY 887 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~~l~~~~----dg~i~iwd~~~--~~~~--~~~~~~~~~i~~l~~sp~d~~~la~g~-~dg~v~iw 887 (1114)
....++-++++|+++.|.++. +|.|.-|.+.. |... ........+-+.+++++ ++++|+++. .-|.|.++
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSVY 116 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEEE
Confidence 566788899999999888875 36677777764 4432 22222233448899999 888888775 56799999
Q ss_pred Eccc-ceEEE--eecccccC----------eeEEEEcCCCCEEEEEe--CCCcEEEEeCCCCccccccccccCCCCCCCC
Q 001248 888 NVRV-DEVKS--KLKGHSKR----------ITGLAFSHALNVLVSSG--ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA 952 (1114)
Q Consensus 888 d~~~-~~~~~--~l~~h~~~----------V~~l~~s~d~~~l~s~s--~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 952 (1114)
-+.. |.+.. .+..|.+. +-...|.|++++|++.+ .|+ |.+|+++.+............|
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dr-i~~y~~~dg~L~~~~~~~v~~G----- 190 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDR-IFLYDLDDGKLTPADPAEVKPG----- 190 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCce-EEEEEcccCccccccccccCCC-----
Confidence 9865 43221 22235444 77889999999999875 454 9999999876655444444444
Q ss_pred CCceEEEEccCCcEEEEE--eCCeEEEEEcCCC-ceeeeeec-----CCC--CcCeeEEEECCCCCEEEEEEc-CCeEEE
Q 001248 953 QSDTRVQFHQDQIHFLVV--HETQLAIFETTKL-ECVKQWVP-----RES--SAPITHATFSCDSQLVYACFL-DATVCV 1021 (1114)
Q Consensus 953 ~~i~~v~fspdg~~l~~~--~d~~i~iwd~~~~-~~~~~~~~-----~~h--~~~v~~l~~s~dg~~l~s~s~-Dg~I~v 1021 (1114)
...+.++|+|++++..+. -+++|.+|..... ..+..+.. ... ......|.+++||++|.++.. ...|.+
T Consensus 191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~ 270 (346)
T COG2706 191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV 270 (346)
T ss_pred CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence 356999999999998873 6789999998773 22222110 111 456788999999999997764 246888
Q ss_pred EEcCC--CeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCC-CcEEEEeccCCCCcccCC
Q 001248 1022 FSAAN--LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-GGVHVFEPLESEGKWGVP 1087 (1114)
Q Consensus 1022 wd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~D-g~v~vW~i~~~~~~~~~~ 1087 (1114)
|.++. +++. .+. ... .....|-.+.|++ ++++|+++..| .+|.++.+....+.+...
T Consensus 271 f~V~~~~g~L~-~~~--~~~-----teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~ 330 (346)
T COG2706 271 FSVDPDGGKLE-LVG--ITP-----TEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGRLTLL 330 (346)
T ss_pred EEEcCCCCEEE-EEE--Eec-----cCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceEEec
Confidence 87743 3322 221 011 1224566789998 57787777765 589999998777666554
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-10 Score=115.01 Aligned_cols=150 Identities=9% Similarity=0.147 Sum_probs=107.9
Q ss_pred eEEEEcCCCCEEEEEeC---C-------CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE---eC
Q 001248 906 TGLAFSHALNVLVSSGA---D-------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV---HE 972 (1114)
Q Consensus 906 ~~l~~s~d~~~l~s~s~---D-------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~---~d 972 (1114)
..+.|+++|.+|+.-.. | +...+|-++..+.. ...+.... .+.|..++|+|+|+.+|+. .+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~-~~~i~l~~-----~~~I~~~~WsP~g~~favi~g~~~ 82 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIP-VESIELKK-----EGPIHDVAWSPNGNEFAVIYGSMP 82 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCc-cceeeccC-----CCceEEEEECcCCCEEEEEEccCC
Confidence 35789999988775433 1 33566666443221 11121111 1368999999999998762 46
Q ss_pred CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcC---CeEEEEEcCCCeeeEEeCCCcccCCCCCCCCcc
Q 001248 973 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD---ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVH 1049 (1114)
Q Consensus 973 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D---g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 1049 (1114)
..+.+||++ ++.+..+. ...+..+.|||+|++|++++.+ |.|.+||+.+.+.+.... . ..
T Consensus 83 ~~v~lyd~~-~~~i~~~~----~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-------~-----~~ 145 (194)
T PF08662_consen 83 AKVTLYDVK-GKKIFSFG----TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-------H-----SD 145 (194)
T ss_pred cccEEEcCc-ccEeEeec----CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-------c-----Cc
Confidence 789999996 66666553 5677899999999999998754 679999999999887655 1 12
Q ss_pred ceEEEecCCCCCeEEEEeC------CCcEEEEeccC
Q 001248 1050 PLVIAAHPQEPNEFALGLS------DGGVHVFEPLE 1079 (1114)
Q Consensus 1050 ~~~~~~~~~d~~~l~s~~~------Dg~v~vW~i~~ 1079 (1114)
+..+.|+| ||++++++.. |+.++||++..
T Consensus 146 ~t~~~WsP-dGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 146 ATDVEWSP-DGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred EEEEEEcC-CCCEEEEEEeccceeccccEEEEEecC
Confidence 34899999 7999998875 79999999863
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.8e-10 Score=111.81 Aligned_cols=282 Identities=13% Similarity=0.207 Sum_probs=172.7
Q ss_pred ccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCC-
Q 001248 355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS- 433 (1114)
Q Consensus 355 ~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~- 433 (1114)
+...+-|.+|.|..+|.+ ||||..+|.|.++.-+....- ..+++-. .+.-...+....--.-...|..+.|.+++.
T Consensus 22 vteadiis~vef~~~Ge~-LatGdkgGRVv~f~r~~~~~~-ey~~~t~-fqshepEFDYLkSleieEKinkIrw~~~~n~ 98 (433)
T KOG1354|consen 22 VTEADIISAVEFDHYGER-LATGDKGGRVVLFEREKLYKG-EYNFQTE-FQSHEPEFDYLKSLEIEEKINKIRWLDDGNL 98 (433)
T ss_pred echhcceeeEEeecccce-EeecCCCCeEEEeeccccccc-ceeeeee-eeccCcccchhhhhhhhhhhhhceecCCCCc
Confidence 446678999999999996 999999999999986543221 1111100 000011111100111234689999998665
Q ss_pred -eEEEEeCCCeEEEEEccCCceee--------------------------------eeEe-eccccCCeeEEEecCCCCe
Q 001248 434 -LFGVAYSRHIVQIYSYHGGDEVR--------------------------------QHLE-IDAHVGGVNDIAFSHPNKQ 479 (1114)
Q Consensus 434 -~las~~~dg~i~iwd~~~~~~~~--------------------------------~~~~-l~~h~~~V~~v~~s~d~~~ 479 (1114)
.++..+.|.+|++|.+....... +... -.+|.--|+++.++.|..
T Consensus 99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E- 177 (433)
T KOG1354|consen 99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE- 177 (433)
T ss_pred cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc-
Confidence 46667799999999886422110 0001 145777899999999998
Q ss_pred eEEEEecCCCCEEEEeCCCCccee---Eee-----ccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCee----
Q 001248 480 LCVITCGDDKTIKVWDATNGAKQY---IFE-----GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV---- 547 (1114)
Q Consensus 480 ~~l~s~~~d~~i~iwd~~~~~~~~---~~~-----~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~---- 547 (1114)
.++++ .|=.|.+|+++--..-. .++ .-..-|++..|+|... ++++-.+..|+|++.|++.....-
T Consensus 178 -t~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIrLcDmR~~aLCd~hsK 254 (433)
T KOG1354|consen 178 -TFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIRLCDMRQSALCDAHSK 254 (433)
T ss_pred -eEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEEEeechhhhhhcchhh
Confidence 45555 47789999987432211 112 2235577888888765 578888889999999998532211
Q ss_pred eecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEEC-CCcceEEEeccCCCC--------
Q 001248 548 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM-DSVQLLTSIDADGGL-------- 618 (1114)
Q Consensus 548 ~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~-------- 618 (1114)
.+..+..+. .+..+ ..--..+.-+.|++.|+++++-+ --+|++||+ ...+++.++..|...
T Consensus 255 lfEepedp~--------~rsff-seiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lY 324 (433)
T KOG1354|consen 255 LFEEPEDPS--------SRSFF-SEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLY 324 (433)
T ss_pred hhccccCCc--------chhhH-HHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHh
Confidence 111111110 00000 00011344456666666666543 378999998 455666666544321
Q ss_pred --CCc---CeEEEcCCCCEEEEEeCCCcEEEEEccCCccc
Q 001248 619 --PAS---PRIRFNKDGCLLAVSTNDNGIKILATSDGIRL 653 (1114)
Q Consensus 619 --~~v---~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~ 653 (1114)
..| ..++|+.++.++++|+..+.+++++...|...
T Consensus 325 EnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~ 364 (433)
T KOG1354|consen 325 ENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKE 364 (433)
T ss_pred hccchhheeEEEEcCCcceEecccccceEEEecCCCCcce
Confidence 112 36889999999999999999999997776443
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.6e-10 Score=125.82 Aligned_cols=222 Identities=11% Similarity=0.038 Sum_probs=129.9
Q ss_pred EeccCCCCceEEEEcCCCCeEEEEEecCC--cEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC
Q 001248 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spdg~~ll~tg~~dg--~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1114)
....+...+.+..|||||++|+++...++ .|++||+.+++... +....+.....+|||
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~--------------------lt~~~g~~~~~~wSP 271 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK--------------------VTSFPGINGAPRFSP 271 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ecCCCCCcCCeeECC
Confidence 34457788999999999998555544443 58899998876532 111122345689999
Q ss_pred CCCeEEEE-eCCCe--EEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCC--CEEEEeCCCCcceeEe
Q 001248 431 DGSLFGVA-YSRHI--VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAKQYIF 505 (1114)
Q Consensus 431 dg~~las~-~~dg~--i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~ 505 (1114)
||+.|+.. +.++. |.+||+.+++.. .+..+.......+|+|||+. ++++...++ .|.++|+.+++... +
T Consensus 272 DG~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~~~~-L 345 (448)
T PRK04792 272 DGKKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGKVSR-L 345 (448)
T ss_pred CCCEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCCEEE-E
Confidence 99988764 55664 777788877533 34455566778999999996 334444444 47777877776433 3
Q ss_pred eccccCEEEEeeccCCCceEEEEEec-CCe--EEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEe
Q 001248 506 EGHEAPVYSVCPHHKENIQFIFSTAL-DGK--IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 582 (1114)
Q Consensus 506 ~~h~~~v~~~~~~~~~~~~~l~s~~~-d~~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~ 582 (1114)
..........+|+ +||++++..+. ++. |.++|+.++.... +... ....... |
T Consensus 346 t~~g~~~~~~~~S--pDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps---------------------~ 400 (448)
T PRK04792 346 TFEGEQNLGGSIT--PDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPS---------------------V 400 (448)
T ss_pred ecCCCCCcCeeEC--CCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCce---------------------E
Confidence 2222223344664 45566666544 443 4445665543221 1111 1111223 4
Q ss_pred cCCCCEEEEEe-CCC--eEEEEECCCcceEEEeccCCCCCCcCeEEEcC
Q 001248 583 DTTKNRFLAAG-DDF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 628 (1114)
Q Consensus 583 ~~~~~~l~~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 628 (1114)
+|+|+.++..+ .++ .+++++. +|.....+.... ..+...+|+|
T Consensus 401 spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~--g~~~~p~Wsp 446 (448)
T PRK04792 401 APNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQ--GEVKSPAWSP 446 (448)
T ss_pred CCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCC--CCcCCCccCC
Confidence 45555555544 333 4777786 555566665432 2456777876
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.7e-09 Score=113.16 Aligned_cols=295 Identities=12% Similarity=0.149 Sum_probs=187.3
Q ss_pred cceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCC
Q 001248 752 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 831 (1114)
Q Consensus 752 ~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~ 831 (1114)
..|.-+.|||+.++|++-+..-...-|+= .....+.+||+.+|.+......-......-.-+.||.|++
T Consensus 250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d-----------~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdK 318 (698)
T KOG2314|consen 250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDD-----------NEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDK 318 (698)
T ss_pred CCceeeecCCccceEEEecCCccccCccc-----------CCCceEEEEEccccchhcceeccCCCccccceEEeccCCc
Confidence 45677889999999888665422221110 0011345666667766543322111222233468999999
Q ss_pred EEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCC-----CcEEEEEcccceEEEeecccccCee
Q 001248 832 YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD-----SSIQIYNVRVDEVKSKLKGHSKRIT 906 (1114)
Q Consensus 832 ~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~d-----g~v~iwd~~~~~~~~~l~~h~~~V~ 906 (1114)
|+|.-..+.|.||+..+..++..-......|....|+| .+++||.=... ..+.+-.+.+++.+++-.-|.-.=.
T Consensus 319 y~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDc 397 (698)
T KOG2314|consen 319 YFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDC 397 (698)
T ss_pred eeEEeccceEEEEecCceeeecccccCCccccCcccCC-CcceEEEEcccccCCcceEEEEecCccceeeeccceeeecc
Confidence 99988888999999887655544333456789999999 88888865432 3677778888877776665554445
Q ss_pred EEEEcCCCCEEEEEe----------CCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-E-e--C
Q 001248 907 GLAFSHALNVLVSSG----------ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V-H--E 972 (1114)
Q Consensus 907 ~l~~s~d~~~l~s~s----------~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~-~--d 972 (1114)
.+-|-.+|.+|+.-- .-..+.|+.+....... .... ....|...+|-|.|..+++ + . .
T Consensus 398 kLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpv----e~ve----lke~vi~FaWEP~gdkF~vi~g~~~k 469 (698)
T KOG2314|consen 398 KLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPV----EVVE----LKESVIAFAWEPHGDKFAVISGNTVK 469 (698)
T ss_pred EEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCc----eeee----cchheeeeeeccCCCeEEEEEccccc
Confidence 577888888887532 12235566666533211 1111 1136788999999999888 3 2 2
Q ss_pred CeEEEEEcCCC----ceeeeeecCCCCcCeeEEEECCCCCEEEEEE---cCCeEEEEEcCCCeeeEEeCCCcccCCCCCC
Q 001248 973 TQLAIFETTKL----ECVKQWVPRESSAPITHATFSCDSQLVYACF---LDATVCVFSAANLKLRCRINPSAYLPAGVSS 1045 (1114)
Q Consensus 973 ~~i~iwd~~~~----~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s---~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~ 1045 (1114)
.++.+|.+.+. +.+..+. ....+.+.|||.|++++.+. ..|.+.++|++-..+...-.+.++.
T Consensus 470 ~tvsfY~~e~~~~~~~lVk~~d----k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~------ 539 (698)
T KOG2314|consen 470 NTVSFYAVETNIKKPSLVKELD----KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFA------ 539 (698)
T ss_pred cceeEEEeecCCCchhhhhhhc----ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccc------
Confidence 46888887732 2233332 34567899999999987654 5688999998853333222211211
Q ss_pred CCccceEEEecCCCCCeEEEEeC------CCcEEEEeccCCC
Q 001248 1046 SNVHPLVIAAHPQEPNEFALGLS------DGGVHVFEPLESE 1081 (1114)
Q Consensus 1046 ~~v~~~~~~~~~~d~~~l~s~~~------Dg~v~vW~i~~~~ 1081 (1114)
...+.|.|. |++++++++ |..-++|+++...
T Consensus 540 ----at~veWDPt-GRYvvT~ss~wrhk~d~GYri~tfqGrl 576 (698)
T KOG2314|consen 540 ----ATEVEWDPT-GRYVVTSSSSWRHKVDNGYRIFTFQGRL 576 (698)
T ss_pred ----cccceECCC-CCEEEEeeehhhhccccceEEEEeecHH
Confidence 225889995 899999886 4566778876544
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.6e-09 Score=124.94 Aligned_cols=205 Identities=14% Similarity=0.120 Sum_probs=138.4
Q ss_pred CeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCC---CcEEEEEcccceEEEeecccccCeeEEEEcCCCC
Q 001248 839 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD---SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN 915 (1114)
Q Consensus 839 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~d---g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~ 915 (1114)
..|.++|.... ..+.+..+...+...+|+| ||+.||.+..+ ..|++||+.+++.. .+..+.+.+.+++|+|||+
T Consensus 170 ~~l~~~d~~g~-~~~~l~~~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~-~~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 170 YELQVADYDGA-NPQTITRSREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQRE-KVASFPGMNGAPAFSPDGS 246 (417)
T ss_pred ceEEEEcCCCC-CCEEeecCCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCC
Confidence 35888887543 3445555666788999999 88888877644 47999999987643 3334556677899999999
Q ss_pred EEEE-EeCCC--cEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeC----CeEEEEEcCCCceeee
Q 001248 916 VLVS-SGADS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE----TQLAIFETTKLECVKQ 988 (1114)
Q Consensus 916 ~l~s-~s~D~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d----~~i~iwd~~~~~~~~~ 988 (1114)
.|+. .+.++ .|.+|++.++.... + . .+. .......|+|||++|+...+ ..|.++|+.+++....
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~---l--~-~~~---~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l 317 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTR---L--T-NGP---GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRL 317 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEE---C--C-CCC---CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence 7764 44444 58888988754321 1 1 111 12356789999999887422 2688888887765332
Q ss_pred eecCCCCcCeeEEEECCCCCEEEEEEcCC---eEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEE
Q 001248 989 WVPRESSAPITHATFSCDSQLVYACFLDA---TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1065 (1114)
Q Consensus 989 ~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg---~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s 1065 (1114)
. .+...+..+.|+|||++|+.++.++ .|.+||+.++.... +. .. .. . ....|+| |++.|+.
T Consensus 318 -~--~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~------~~--~~-~--~~p~~sp-dg~~l~~ 381 (417)
T TIGR02800 318 -T--FRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LT------DT--GL-D--ESPSFAP-NGRMILY 381 (417)
T ss_pred -e--cCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-cc------CC--CC-C--CCceECC-CCCEEEE
Confidence 2 2345677889999999999888776 79999998865432 22 01 01 1 1457888 6777777
Q ss_pred EeCCCc
Q 001248 1066 GLSDGG 1071 (1114)
Q Consensus 1066 ~~~Dg~ 1071 (1114)
++.++.
T Consensus 382 ~~~~~~ 387 (417)
T TIGR02800 382 ATTRGG 387 (417)
T ss_pred EEeCCC
Confidence 766653
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.25 E-value=1e-08 Score=109.78 Aligned_cols=238 Identities=10% Similarity=0.063 Sum_probs=151.7
Q ss_pred EeeCCCEEEEEe-----------CCeEEEEEcCCCccccccCCCCC-------CeEEEEEecCCCcEEEEEe-C-CCcEE
Q 001248 826 LSKNDSYVMSAS-----------GGKISLFNMMTFKTMATFMPPPP-------AATFLAFHPQDNNIIAIGM-D-DSSIQ 885 (1114)
Q Consensus 826 ~s~d~~~l~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~-------~i~~l~~sp~d~~~la~g~-~-dg~v~ 885 (1114)
+|||++.|.++. ++.|.+||..+++.+..+..... ....++++| ||++|++.. . +..|.
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~ 131 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVG 131 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC-CCCEEEEecCCCCCEEE
Confidence 999999877664 37799999999999988764322 234789999 888888766 4 68999
Q ss_pred EEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEcc-CC
Q 001248 886 IYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ-DQ 964 (1114)
Q Consensus 886 iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fsp-dg 964 (1114)
+.|+.+++.+.++.-- +...-...+.+..+ +-+.||......++............+.+... .-...- .|++ ||
T Consensus 132 VvD~~~~kvv~ei~vp-~~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~-~v~~rP-~~~~~dg 206 (352)
T TIGR02658 132 VVDLEGKAFVRMMDVP-DCYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDE-YLINHP-AYSNKSG 206 (352)
T ss_pred EEECCCCcEEEEEeCC-CCcEEEEecCCccE--EEeecCceEEEEecCCCceEEeeeeeecCCcc-ccccCC-ceEcCCC
Confidence 9999999998877642 22222233322222 22345554444443322211111111111000 000011 4566 99
Q ss_pred cEEEEEeCCeEEEEEcCCC-----ceeeeeecCC-----CCcCeeEEEECCCCCEEEEEEc----------CCeEEEEEc
Q 001248 965 IHFLVVHETQLAIFETTKL-----ECVKQWVPRE-----SSAPITHATFSCDSQLVYACFL----------DATVCVFSA 1024 (1114)
Q Consensus 965 ~~l~~~~d~~i~iwd~~~~-----~~~~~~~~~~-----h~~~v~~l~~s~dg~~l~s~s~----------Dg~I~vwd~ 1024 (1114)
+++.++.+|.|.+.|+.+. +....+.... ..+.+.-+++++|++.|++... .+.|.++|.
T Consensus 207 ~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~ 286 (352)
T TIGR02658 207 RLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA 286 (352)
T ss_pred cEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC
Confidence 9999988899999995433 2222221110 1233444999999999988542 247999999
Q ss_pred CCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCC-eEEEEe-CCCcEEEEeccCCC
Q 001248 1025 ANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGL-SDGGVHVFEPLESE 1081 (1114)
Q Consensus 1025 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~-~l~s~~-~Dg~v~vW~i~~~~ 1081 (1114)
.+++.+.++. . | ..+..++++| |++ +|++.. .++.|.+.|..+++
T Consensus 287 ~t~kvi~~i~----v--G-----~~~~~iavS~-Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 287 KTGKRLRKIE----L--G-----HEIDSINVSQ-DAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred CCCeEEEEEe----C--C-----CceeeEEECC-CCCeEEEEeCCCCCcEEEEECcCCe
Confidence 9999999887 2 2 1233799999 567 777666 67899999999988
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.1e-09 Score=123.97 Aligned_cols=222 Identities=10% Similarity=0.058 Sum_probs=132.2
Q ss_pred EeccCCCCceEEEEcCCCCeEEEEEecC--CcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC
Q 001248 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spdg~~ll~tg~~d--g~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1114)
....+...+...+|||||++|+++...+ ..|.+||+.+++... +....+.+...+|||
T Consensus 193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~~~g~~~~~~~Sp 252 (430)
T PRK00178 193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITNFEGLNGAPAWSP 252 (430)
T ss_pred EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccCCCCCcCCeEECC
Confidence 4556788899999999999855555443 369999999886543 222233456789999
Q ss_pred CCCeEEEE-eCCC--eEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCC--CEEEEeCCCCcceeEe
Q 001248 431 DGSLFGVA-YSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAKQYIF 505 (1114)
Q Consensus 431 dg~~las~-~~dg--~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~ 505 (1114)
||++|+.. +.+| .|.+||+.+++.. .+..+........|+|||+.+ +++...++ .|.++|+.+++... +
T Consensus 253 DG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~i-~f~s~~~g~~~iy~~d~~~g~~~~-l 326 (430)
T PRK00178 253 DGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRTL-YFTSDRGGKPQIYKVNVNGGRAER-V 326 (430)
T ss_pred CCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCEE-EEEECCCCCceEEEEECCCCCEEE-e
Confidence 99998854 4444 5888899887643 245566667788999999963 33443443 57788887776433 3
Q ss_pred eccccCEEEEeeccCCCceEEEEEec-CC--eEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEe
Q 001248 506 EGHEAPVYSVCPHHKENIQFIFSTAL-DG--KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 582 (1114)
Q Consensus 506 ~~h~~~v~~~~~~~~~~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~ 582 (1114)
...........|+ ++|+.++..+. ++ .|.+||+.+++... +.. ........|
T Consensus 327 t~~~~~~~~~~~S--pdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~--------------------- 381 (430)
T PRK00178 327 TFVGNYNARPRLS--ADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPSV--------------------- 381 (430)
T ss_pred ecCCCCccceEEC--CCCCEEEEEEccCCceEEEEEECCCCCEEE-ccC-CCCCCCceE---------------------
Confidence 2112222334554 45567766654 33 47778887654322 111 111122344
Q ss_pred cCCCCEEEEEeCC---CeEEEEECCCcceEEEeccCCCCCCcCeEEEcC
Q 001248 583 DTTKNRFLAAGDD---FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 628 (1114)
Q Consensus 583 ~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 628 (1114)
+|+|+.++..+.+ ..|++++... .....+.... ..+...+|+|
T Consensus 382 spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~~--g~~~~p~ws~ 427 (430)
T PRK00178 382 APNGTMLIYATRQQGRGVLMLVSING-RVRLPLPTAQ--GEVREPSWSP 427 (430)
T ss_pred CCCCCEEEEEEecCCceEEEEEECCC-CceEECcCCC--CCcCCCccCC
Confidence 4444455554432 3567777743 3334444322 2356667766
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.1e-09 Score=121.68 Aligned_cols=191 Identities=14% Similarity=0.113 Sum_probs=122.8
Q ss_pred ccCCCCCeeEEEEcCCCCeEEEEeCC---CeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCC--C
Q 001248 416 VKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--T 490 (1114)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~d---g~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~--~ 490 (1114)
+..+...+...+|||||++|+.+..+ ..|++||+.+++... +..+.+.+.+++|+|||+. ++++.+.++ .
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~----~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~ 259 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK----VASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD 259 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence 44566678999999999999987654 479999999876432 3345566778999999996 344555444 5
Q ss_pred EEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEec-CC--eEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCe
Q 001248 491 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DG--KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 567 (1114)
Q Consensus 491 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 567 (1114)
|++||+.++.. ..+..+........|++ +|+.|+..+. ++ .|.++|+.+.+. ..+........
T Consensus 260 i~~~d~~~~~~-~~l~~~~~~~~~~~~s~--dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~---------- 325 (417)
T TIGR02800 260 IYVMDLDGKQL-TRLTNGPGIDTEPSWSP--DGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNA---------- 325 (417)
T ss_pred EEEEECCCCCE-EECCCCCCCCCCEEECC--CCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCcc----------
Confidence 89999887754 44444544444556654 5667766554 33 466667654332 12222222222
Q ss_pred EEeeecccceeEEEecCCCCEEEEEeCCC---eEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCC
Q 001248 568 TYQGFRKRSLGVVQFDTTKNRFLAAGDDF---SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN 640 (1114)
Q Consensus 568 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg 640 (1114)
...|+|++++++.++.++ .|.+||+.++... .+.... ......|+|||+.|+..+.++
T Consensus 326 -----------~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~---~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 326 -----------SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDTG---LDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred -----------CeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCCC---CCCCceECCCCCEEEEEEeCC
Confidence 344556666777776655 7899998876543 333221 235678999999888877654
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2e-09 Score=107.64 Aligned_cols=215 Identities=13% Similarity=0.127 Sum_probs=141.6
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEc-cCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEE
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSY-HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 493 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~-~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~i 493 (1114)
.+.||.+.|++...-|-..-+.+.+.|.+++||-- +.++....+ ...-..+++++.+.++.. .|+.|-..|++.-
T Consensus 19 ~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI--~~~mP~~~~~~~y~~e~~--~L~vg~~ngtvte 94 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSI--YHYMPSPCSAMEYVSESR--RLYVGQDNGTVTE 94 (404)
T ss_pred hhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchh--hhhCCCCceEeeeeccce--EEEEEEecceEEE
Confidence 57899999999999998888999999999999954 344433221 123456789999999888 6888888899888
Q ss_pred EeCC----CCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEE
Q 001248 494 WDAT----NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY 569 (1114)
Q Consensus 494 wd~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~ 569 (1114)
+.+. .-..++....|...|..+.|+..+ ..+++.+.|..+.---.+.+..+-.+.. .+.+..+
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~--e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-----~~~~t~~------ 161 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTH--EWVLSTGKDKQFAWHCTESGNRLGGYNF-----ETPASAL------ 161 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCc--eeEEEeccccceEEEeeccCCcccceEe-----eccCCCC------
Confidence 8654 344556777899999999887665 6899999888764322222222111100 0000000
Q ss_pred eeecccceeEEEecCCCCEEEEEeCCCeEEEEEC--CCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEc
Q 001248 570 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM--DSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT 647 (1114)
Q Consensus 570 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~ 647 (1114)
.+.- .+...|...|.|.+-.+ ..-..+.++.++ ...+.+++|.+....|.+|..|..+.+||+
T Consensus 162 -----------~~d~--~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h--~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdi 226 (404)
T KOG1409|consen 162 -----------QFDA--LYAFVGDHSGQITMLKLEQNGCQLITTFNGH--TGEVTCLKWDPGQRLLFSGASDHSVIMWDI 226 (404)
T ss_pred -----------ceee--EEEEecccccceEEEEEeecCCceEEEEcCc--ccceEEEEEcCCCcEEEeccccCceEEEec
Confidence 0000 02334444555554443 233455566544 668999999999999999999999999998
Q ss_pred cCCccceeeccccc
Q 001248 648 SDGIRLLRTFENLA 661 (1114)
Q Consensus 648 ~~~~~~~~~~~~~~ 661 (1114)
.........+.+|.
T Consensus 227 gg~~g~~~el~gh~ 240 (404)
T KOG1409|consen 227 GGRKGTAYELQGHN 240 (404)
T ss_pred cCCcceeeeeccch
Confidence 76644444444433
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-08 Score=108.79 Aligned_cols=320 Identities=11% Similarity=0.157 Sum_probs=198.8
Q ss_pred eEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCC-----------CcEEEEE
Q 001248 578 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-----------NGIKILA 646 (1114)
Q Consensus 578 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d-----------g~i~iwd 646 (1114)
+.+.|||.|.+|++--..| |.+|--.+-..++.+... .|.-+.|||..+||++-+.. ..+.|||
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp----~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHP----GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCC----CceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence 3456666666777766544 678977766666666533 47889999999999987542 4566777
Q ss_pred ccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCce
Q 001248 647 TSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKS 726 (1114)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 726 (1114)
+.+| ...+.+.
T Consensus 289 I~tG-~lkrsF~-------------------------------------------------------------------- 299 (698)
T KOG2314|consen 289 IATG-LLKRSFP-------------------------------------------------------------------- 299 (698)
T ss_pred cccc-chhccee--------------------------------------------------------------------
Confidence 7666 3333221
Q ss_pred eEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCc
Q 001248 727 KVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI 806 (1114)
Q Consensus 727 ~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~ 806 (1114)
.+. .....-.-+.||.|+++++....+ .|.||+... + -+.+ ++
T Consensus 300 ---------------~~~----~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtps--f------------~lld---~K 342 (698)
T KOG2314|consen 300 ---------------VIK----SPYLKWPIFRWSHDDKYFARMTGN-SISIYETPS--F------------MLLD---KK 342 (698)
T ss_pred ---------------ccC----CCccccceEEeccCCceeEEeccc-eEEEEecCc--e------------eeec---cc
Confidence 100 011112236788999988877765 677776432 0 0111 11
Q ss_pred cccccCCCCCCCCCccEEEEeeCCCEEEEEe---C---CeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEe-
Q 001248 807 MMTNDVTDSNPEEAVPCFALSKNDSYVMSAS---G---GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM- 879 (1114)
Q Consensus 807 ~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~---d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~- 879 (1114)
.+ .-..|....|+|-+..||.-. + -++.+..+.+++.+++...+.-.=..+-|-. .|.+|+.--
T Consensus 343 sl--------ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk-~gdyLcvkvd 413 (698)
T KOG2314|consen 343 SL--------KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQK-SGDYLCVKVD 413 (698)
T ss_pred cc--------CCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEecc-CCcEEEEEEE
Confidence 11 235578889999999999765 1 3588888888887777665543333455555 677776422
Q ss_pred ---------CCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCC---CcEEEEeCCCCccccccccccCCC
Q 001248 880 ---------DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD---SQLCVWSSDGWEKQKNRFLQIPTG 947 (1114)
Q Consensus 880 ---------~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~~~ 947 (1114)
.-..+.|+.+.....--....-...|...+|-|.|..+++-+.. .++.+|.+++... ....+..++.
T Consensus 414 R~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~-~~~lVk~~dk 492 (698)
T KOG2314|consen 414 RHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK-KPSLVKELDK 492 (698)
T ss_pred eeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCC-chhhhhhhcc
Confidence 11234455554433222222345678999999999888765543 5799999985322 2333333332
Q ss_pred CCCCCCCceEEEEccCCcEEEEE----eCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEc------CC
Q 001248 948 RTPTAQSDTRVQFHQDQIHFLVV----HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL------DA 1017 (1114)
Q Consensus 948 ~~~~~~~i~~v~fspdg~~l~~~----~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~------Dg 1017 (1114)
. ..+.+.|+|.|++++++ ..|.+..+|+.-..+..+-. .. ....+.+-|.|.|+|+++++. |.
T Consensus 493 ~-----~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~-~e-h~~at~veWDPtGRYvvT~ss~wrhk~d~ 565 (698)
T KOG2314|consen 493 K-----FANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTAS-PE-HFAATEVEWDPTGRYVVTSSSSWRHKVDN 565 (698)
T ss_pred c-----ccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccC-cc-ccccccceECCCCCEEEEeeehhhhcccc
Confidence 1 35789999999999883 46789999987533333211 12 235678899999999999885 33
Q ss_pred eEEEEEcC
Q 001248 1018 TVCVFSAA 1025 (1114)
Q Consensus 1018 ~I~vwd~~ 1025 (1114)
--++|++.
T Consensus 566 GYri~tfq 573 (698)
T KOG2314|consen 566 GYRIFTFQ 573 (698)
T ss_pred ceEEEEee
Confidence 45666654
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=5e-09 Score=113.07 Aligned_cols=188 Identities=16% Similarity=0.302 Sum_probs=147.9
Q ss_pred eCCCEEEEEe-CCeEEEEEcCCCccccccCCC---CCCeEEEEEe------c-------------CCCcEEEEEeCCCcE
Q 001248 828 KNDSYVMSAS-GGKISLFNMMTFKTMATFMPP---PPAATFLAFH------P-------------QDNNIIAIGMDDSSI 884 (1114)
Q Consensus 828 ~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~---~~~i~~l~~s------p-------------~d~~~la~g~~dg~v 884 (1114)
|...++|... ||.+++|+...++....+... .+..++.+|. | .|-.++|-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4456788777 999999999988877666432 2334444442 1 134588999999999
Q ss_pred EEEEcccceEEEeec--ccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEcc
Q 001248 885 QIYNVRVDEVKSKLK--GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 962 (1114)
Q Consensus 885 ~iwd~~~~~~~~~l~--~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fsp 962 (1114)
.+|++..|+....+. .|.+.|+++.++.+-..|.|++.|+.+..|+...... ++...+..+ .+..++.+|
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~-----~~~~~~~~~---~~~sl~is~ 154 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI-----IRIWKEQKP---LVSSLCISP 154 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee-----eeeeccCCC---ccceEEEcC
Confidence 999999999888886 5999999999999999999999999999999988443 334443332 678999999
Q ss_pred CCcEEEEEeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCC-----CCEEEE-EEcCCeEEEEEcCC
Q 001248 963 DQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCD-----SQLVYA-CFLDATVCVFSAAN 1026 (1114)
Q Consensus 963 dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~d-----g~~l~s-~s~Dg~I~vwd~~~ 1026 (1114)
||+.|+++ .++|++||+++++.+..|. ||.++|.+++|..+ |.++++ ...+..+.+|-+..
T Consensus 155 D~~~l~~a-s~~ik~~~~~~kevv~~ft--gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 155 DGKILLTA-SRQIKVLDIETKEVVITFT--GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCCEEEec-cceEEEEEccCceEEEEec--CCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 99988875 5789999999999999997 99999999999887 677554 44556688886643
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.4e-08 Score=114.33 Aligned_cols=198 Identities=14% Similarity=0.085 Sum_probs=117.4
Q ss_pred ccCCCCCeeEEEEcCCCCeEEEEeCC---CeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCC--
Q 001248 416 VKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT-- 490 (1114)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~d---g~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~-- 490 (1114)
+..+...+.+.+|||||++|+..+.+ ..|.+||+.+++... +....+.....+|+|||+. ++++.+.++.
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~ 287 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPE 287 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeE
Confidence 44556688999999999999987543 258889998876432 2222334457899999996 3445555665
Q ss_pred EEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEec-CCe--EEEEEcCCCCCeeeecCCCCeeEEEEEecCCCe
Q 001248 491 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DGK--IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 567 (1114)
Q Consensus 491 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-d~~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 567 (1114)
|++||+.+++. ..+..+.......+|++ ||+.++..+. ++. |.++|+.+++.. .+..........
T Consensus 288 Iy~~dl~tg~~-~~lt~~~~~~~~p~wSp--DG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g~~~~~~-------- 355 (448)
T PRK04792 288 IYVVDIATKAL-TRITRHRAIDTEPSWHP--DGKSLIFTSERGGKPQIYRVNLASGKVS-RLTFEGEQNLGG-------- 355 (448)
T ss_pred EEEEECCCCCe-EECccCCCCccceEECC--CCCEEEEEECCCCCceEEEEECCCCCEE-EEecCCCCCcCe--------
Confidence 88889887764 45555555566677765 5566655443 444 555565543322 111111111223
Q ss_pred EEeeecccceeEEEecCCCCEEEEEeC-CC--eEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCC-Cc--
Q 001248 568 TYQGFRKRSLGVVQFDTTKNRFLAAGD-DF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-NG-- 641 (1114)
Q Consensus 568 ~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d-g~-- 641 (1114)
.|+|+|++++..+. ++ .|.++|+.+++... +.... ......|+|||+.|+..+.+ +.
T Consensus 356 -------------~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~---~d~~ps~spdG~~I~~~~~~~g~~~ 418 (448)
T PRK04792 356 -------------SITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTSTR---LDESPSVAPNGTMVIYSTTYQGKQV 418 (448)
T ss_pred -------------eECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCCC---CCCCceECCCCCEEEEEEecCCceE
Confidence 44555555655443 33 46667887776533 32221 12346899999988776543 33
Q ss_pred EEEEEc
Q 001248 642 IKILAT 647 (1114)
Q Consensus 642 i~iwd~ 647 (1114)
+.+++.
T Consensus 419 l~~~~~ 424 (448)
T PRK04792 419 LAAVSI 424 (448)
T ss_pred EEEEEC
Confidence 556665
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.9e-08 Score=116.08 Aligned_cols=199 Identities=12% Similarity=0.100 Sum_probs=122.2
Q ss_pred ccCCCCCeeEEEEcCCCCeEEEEeCC---CeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCC--C
Q 001248 416 VKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--T 490 (1114)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~d---g~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~--~ 490 (1114)
+..+...+...+|||||++|+..+.+ ..|.+||+.+++... +....+.+...+|+|||+. ++++.+.++ .
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~ 268 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPE 268 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCE-EEEEEccCCCce
Confidence 44566789999999999999887643 368999999886432 3333445567999999996 334555454 5
Q ss_pred EEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEec-CC--eEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCe
Q 001248 491 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DG--KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 567 (1114)
Q Consensus 491 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 567 (1114)
|++||+.+++. ..+..+........|++ ||+.++..+. ++ .|.++|+.+++... +.......
T Consensus 269 Iy~~d~~~~~~-~~lt~~~~~~~~~~~sp--Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~----------- 333 (430)
T PRK00178 269 IYVMDLASRQL-SRVTNHPAIDTEPFWGK--DGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYN----------- 333 (430)
T ss_pred EEEEECCCCCe-EEcccCCCCcCCeEECC--CCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCc-----------
Confidence 88889888764 44555555555566654 5566655543 33 46666665543221 11111111
Q ss_pred EEeeecccceeEEEecCCCCEEEEEeCC-C--eEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCC-C--c
Q 001248 568 TYQGFRKRSLGVVQFDTTKNRFLAAGDD-F--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-N--G 641 (1114)
Q Consensus 568 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d-g--~ 641 (1114)
....|+|+++.++..+.+ + .|.+||+.+++... +.... ......|+|||+.++..+.+ | .
T Consensus 334 ----------~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~~---~~~~p~~spdg~~i~~~~~~~g~~~ 399 (430)
T PRK00178 334 ----------ARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTDTS---LDESPSVAPNGTMLIYATRQQGRGV 399 (430)
T ss_pred ----------cceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccCCC---CCCCceECCCCCEEEEEEecCCceE
Confidence 123456666666665532 2 58889998876533 33211 12356899999998877654 3 3
Q ss_pred EEEEEcc
Q 001248 642 IKILATS 648 (1114)
Q Consensus 642 i~iwd~~ 648 (1114)
+.+++..
T Consensus 400 l~~~~~~ 406 (430)
T PRK00178 400 LMLVSIN 406 (430)
T ss_pred EEEEECC
Confidence 5555553
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.2e-09 Score=100.93 Aligned_cols=273 Identities=12% Similarity=0.147 Sum_probs=168.8
Q ss_pred CceeEEEeccCCCCccccccccCccccccceEEEEEc---cCcc-eeeecccCceEEEEeecccccCCCCCccccccccc
Q 001248 724 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFT---NSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQL 799 (1114)
Q Consensus 724 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s---~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 799 (1114)
|.+.+|++.+.+... ...+.- .....+..+.|. .+|. .++.+-..|.|.++........- .
T Consensus 46 Gkl~Lys~~d~~~~~-l~~~q~---~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~-----------~ 110 (339)
T KOG0280|consen 46 GKLHLYSLEDMKLSP-LDTLQC---TDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSV-----------H 110 (339)
T ss_pred cceEEEeecccccCc-cceeee---ecccccceeeeeeccCCccceeeeccccceEEEEeeccceeee-----------e
Confidence 678888888765544 221111 123334444443 2333 34555667888887654221100 0
Q ss_pred cCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCcc--ccccCCCCCCeEEEEEecCCCcEEE
Q 001248 800 WQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT--MATFMPPPPAATFLAFHPQDNNIIA 876 (1114)
Q Consensus 800 w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~sp~d~~~la 876 (1114)
....++..+ ......++.|++.+..++++. +|.+.+-+...... .++++.|.-++....|+..+.+++.
T Consensus 111 L~~ls~~ki--------~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvy 182 (339)
T KOG0280|consen 111 LRGLSSKKI--------SVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVY 182 (339)
T ss_pred ecccchhhh--------hheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEE
Confidence 000011000 011245677888888888886 78888665554433 3478999999999999987889999
Q ss_pred EEeCCCcEEEEEcc-cceEEEe-ecccccCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCC
Q 001248 877 IGMDDSSIQIYNVR-VDEVKSK-LKGHSKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQ 953 (1114)
Q Consensus 877 ~g~~dg~v~iwd~~-~~~~~~~-l~~h~~~V~~l~~s~-d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 953 (1114)
+|++||.+.-||++ .++.+.. -+-|...|.+|.-+| .+.++++|+.|-.|++||.++-... + +++. ..+
T Consensus 183 tGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP----l--~~~~--v~G 254 (339)
T KOG0280|consen 183 TGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP----L--FKAK--VGG 254 (339)
T ss_pred ecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCc----c--ccCc--ccc
Confidence 99999999999998 3444443 566888999998886 5789999999999999999862211 1 1111 126
Q ss_pred CceEEEEccC--CcEEEEEeCCeEEEEEcCCCcee---eeeecCCCCcCeeEEEECCCCCEEEEEE-cCCeEE-EEEcCC
Q 001248 954 SDTRVQFHQD--QIHFLVVHETQLAIFETTKLECV---KQWVPRESSAPITHATFSCDSQLVYACF-LDATVC-VFSAAN 1026 (1114)
Q Consensus 954 ~i~~v~fspd--g~~l~~~~d~~i~iwd~~~~~~~---~~~~~~~h~~~v~~l~~s~dg~~l~s~s-~Dg~I~-vwd~~~ 1026 (1114)
.|..+..+|. +++|+++.-...+|-+...+... .......|.+-...-.|.....+||+++ .|+.++ +|-..+
T Consensus 255 GVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 255 GVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred ceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeecc
Confidence 8899999985 34555555555666666554332 1112235555555566644445677755 466644 665554
Q ss_pred C
Q 001248 1027 L 1027 (1114)
Q Consensus 1027 ~ 1027 (1114)
+
T Consensus 335 ~ 335 (339)
T KOG0280|consen 335 G 335 (339)
T ss_pred C
Confidence 4
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.4e-08 Score=113.30 Aligned_cols=219 Identities=13% Similarity=0.076 Sum_probs=125.3
Q ss_pred CcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE---EEeCCC--eEEEEEccCCcee
Q 001248 381 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG---VAYSRH--IVQIYSYHGGDEV 455 (1114)
Q Consensus 381 g~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la---s~~~dg--~i~iwd~~~~~~~ 455 (1114)
+.|.+.|.+.+.... +......+..-+|||||+.++ +...+| .|.+.++.+++..
T Consensus 165 ~~l~~~d~dG~~~~~--------------------lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~ 224 (428)
T PRK01029 165 GELWSVDYDGQNLRP--------------------LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK 224 (428)
T ss_pred ceEEEEcCCCCCceE--------------------cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce
Confidence 367788877654432 333445667789999998633 333343 4777788877643
Q ss_pred eeeEeeccccCCeeEEEecCCCCeeEEEEecC----CCCEEEEeCCCC---cceeEeeccccCEEEEeeccCCCceEEEE
Q 001248 456 RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD----DKTIKVWDATNG---AKQYIFEGHEAPVYSVCPHHKENIQFIFS 528 (1114)
Q Consensus 456 ~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~----d~~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s 528 (1114)
+ +....+.....+|||||+.+ +++... +-.+..|++..+ +......++.+.....+|+ +||+.|+.
T Consensus 225 ~----lt~~~g~~~~p~wSPDG~~L-af~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wS--PDG~~Laf 297 (428)
T PRK01029 225 K----ILALQGNQLMPTFSPRKKLL-AFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFS--PDGTRLVF 297 (428)
T ss_pred E----eecCCCCccceEECCCCCEE-EEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEEC--CCCCEEEE
Confidence 2 33334455678999999963 333332 223445777653 3222222222334556664 56676666
Q ss_pred Ee-cCCeEEEEEc--CCC-CCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeC---CCeEEEE
Q 001248 529 TA-LDGKIKAWLY--DNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD---DFSIKFW 601 (1114)
Q Consensus 529 ~~-~d~~i~~wd~--~~~-~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iw 601 (1114)
.+ .+|...+|.+ ... .....+......+... .|+|+|+.++..+. ...|++|
T Consensus 298 ~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p---------------------~wSPDG~~Laf~~~~~g~~~I~v~ 356 (428)
T PRK01029 298 VSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCP---------------------AWSPDGKKIAFCSVIKGVRQICVY 356 (428)
T ss_pred EECCCCCceEEEEECcccccceEEeccCCCCccce---------------------eECCCCCEEEEEEcCCCCcEEEEE
Confidence 55 4665555543 221 1122222222223334 45555555655443 2479999
Q ss_pred ECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeC---CCcEEEEEccCC
Q 001248 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN---DNGIKILATSDG 650 (1114)
Q Consensus 602 d~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~---dg~i~iwd~~~~ 650 (1114)
|+.+++........ ..+....|+|||+.|+.... ...|.++++.++
T Consensus 357 dl~~g~~~~Lt~~~---~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 357 DLATGRDYQLTTSP---ENKESPSWAIDSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred ECCCCCeEEccCCC---CCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 99888765443321 24577999999998876543 345778887766
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.5e-08 Score=112.96 Aligned_cols=304 Identities=12% Similarity=0.081 Sum_probs=178.7
Q ss_pred EEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEE
Q 001248 481 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMA 560 (1114)
Q Consensus 481 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~ 560 (1114)
.++.++.++.|..+|..+|+.+....-......... .++..++.++.++.+..+|..+++.+..............
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~----v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~ 142 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG----ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL 142 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE----EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence 477888889999999999998876654332212222 2335788888999999999988777665443221100000
Q ss_pred EecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCC---CcCeEEEcCCCCEEEEEe
Q 001248 561 YSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP---ASPRIRFNKDGCLLAVST 637 (1114)
Q Consensus 561 ~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~v~~~~~s~d~~~l~~~~ 637 (1114)
+ .+..++.++.++.|+.||..+|+.+..+....... ...+..+ .+..++.+.
T Consensus 143 ---------------------v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~ 197 (377)
T TIGR03300 143 ---------------------V--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGF 197 (377)
T ss_pred ---------------------E--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEEC
Confidence 0 12357778889999999999999888775432210 0011122 234677888
Q ss_pred CCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCccc
Q 001248 638 NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPR 717 (1114)
Q Consensus 638 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 717 (1114)
.+|.+..+|..+|......-..... + .
T Consensus 198 ~~g~v~ald~~tG~~~W~~~~~~~~----------------g-----------------------------------~-- 224 (377)
T TIGR03300 198 AGGKLVALDLQTGQPLWEQRVALPK----------------G-----------------------------------R-- 224 (377)
T ss_pred CCCEEEEEEccCCCEeeeeccccCC----------------C-----------------------------------C--
Confidence 8899999999888432211000000 0 0
Q ss_pred ccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccc
Q 001248 718 ITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAP 797 (1114)
Q Consensus 718 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 797 (1114)
. ...++.+. ...+ .+ .+..+++++.+|.++.||...++
T Consensus 225 ----~-~~~~~~~~------------------~~~p----~~--~~~~vy~~~~~g~l~a~d~~tG~------------- 262 (377)
T TIGR03300 225 ----T-ELERLVDV------------------DGDP----VV--DGGQVYAVSYQGRVAALDLRSGR------------- 262 (377)
T ss_pred ----C-chhhhhcc------------------CCcc----EE--ECCEEEEEEcCCEEEEEECCCCc-------------
Confidence 0 00000000 0000 11 13356666677788877764322
Q ss_pred cccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCC-CCeEEEEEecCCCcEE
Q 001248 798 QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNII 875 (1114)
Q Consensus 798 ~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~l 875 (1114)
.+|....+ .....+ .++..+.+++ +|.+..+|..+++.+....... ........ .+..|
T Consensus 263 ~~W~~~~~--------------~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i---~g~~l 323 (377)
T TIGR03300 263 VLWKRDAS--------------SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV---VGGYL 323 (377)
T ss_pred EEEeeccC--------------CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE---ECCEE
Confidence 13433210 011122 2345555555 8999999999998775553221 12222233 24578
Q ss_pred EEEeCCCcEEEEEcccceEEEeecccccCee-EEEEcCCCCEEEEEeCCCcEEEE
Q 001248 876 AIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT-GLAFSHALNVLVSSGADSQLCVW 929 (1114)
Q Consensus 876 a~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~-~l~~s~d~~~l~s~s~D~~v~iw 929 (1114)
++++.+|.|+++|..+|+.+..+..+...+. +.++. + ..|+.++.||.|..|
T Consensus 324 ~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 324 VVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred EEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 8899999999999999999988886665433 23333 3 458889999988765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.9e-09 Score=113.11 Aligned_cols=146 Identities=15% Similarity=0.241 Sum_probs=118.9
Q ss_pred CcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCe
Q 001248 762 SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGK 840 (1114)
Q Consensus 762 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~ 840 (1114)
+-..++-+...|.|.+|++.. |.+... +....|.+.|.++.++.+-..|.+++ |..
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~----------------------g~it~~-~st~~h~~~v~~~~~~~~~~ciyS~~ad~~ 125 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAG----------------------GEITAK-LSTDKHYGNVNEILDAQRLGCIYSVGADLK 125 (541)
T ss_pred CceEEEeecCCccEEEEEecC----------------------CeEEEE-EecCCCCCcceeeecccccCceEecCCcee
Confidence 344566677778888877653 222222 33335999999999999988999888 899
Q ss_pred EEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCC-----CC
Q 001248 841 ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA-----LN 915 (1114)
Q Consensus 841 i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d-----~~ 915 (1114)
+..|+..+...++.+......+.+++.+| |+.+|++|+ ++|++||+++++.+..|.||.++|.++.|..+ |.
T Consensus 126 v~~~~~~~~~~~~~~~~~~~~~~sl~is~-D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~ 202 (541)
T KOG4547|consen 126 VVYILEKEKVIIRIWKEQKPLVSSLCISP-DGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGK 202 (541)
T ss_pred EEEEecccceeeeeeccCCCccceEEEcC-CCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccc
Confidence 99999999999999999999999999999 899999886 68999999999999999999999999999876 55
Q ss_pred EEE-EEeCCCcEEEEeCCC
Q 001248 916 VLV-SSGADSQLCVWSSDG 933 (1114)
Q Consensus 916 ~l~-s~s~D~~v~iwd~~~ 933 (1114)
++. +...+.-+.+|-++.
T Consensus 203 ~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 203 YVLSSAAAERGITVWVVEK 221 (541)
T ss_pred eeeeccccccceeEEEEEc
Confidence 554 555666788887776
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.6e-07 Score=106.40 Aligned_cols=234 Identities=15% Similarity=0.102 Sum_probs=134.9
Q ss_pred CCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEc
Q 001248 370 QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSY 449 (1114)
Q Consensus 370 g~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~ 449 (1114)
+.+ +++++.+|.|.-+|..+|+.+-...+. .... ...+ .++..++.++.++.+..+|.
T Consensus 65 ~~~-v~v~~~~g~v~a~d~~tG~~~W~~~~~----------------~~~~---~~p~--v~~~~v~v~~~~g~l~ald~ 122 (377)
T TIGR03300 65 GGK-VYAADADGTVVALDAETGKRLWRVDLD----------------ERLS---GGVG--ADGGLVFVGTEKGEVIALDA 122 (377)
T ss_pred CCE-EEEECCCCeEEEEEccCCcEeeeecCC----------------CCcc---cceE--EcCCEEEEEcCCCEEEEEEC
Confidence 443 777888999999999999876432211 0001 1122 25778888889999999999
Q ss_pred cCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEe-eccCCCceEEEE
Q 001248 450 HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC-PHHKENIQFIFS 528 (1114)
Q Consensus 450 ~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~-~~~~~~~~~l~s 528 (1114)
.+|+.+.... +. +.+.+.-.. .+. .++.++.++.|..||.++|+.+..+......+.... -++.-.+..++.
T Consensus 123 ~tG~~~W~~~-~~---~~~~~~p~v-~~~--~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~ 195 (377)
T TIGR03300 123 EDGKELWRAK-LS---SEVLSPPLV-ANG--LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLV 195 (377)
T ss_pred CCCcEeeeec-cC---ceeecCCEE-ECC--EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEE
Confidence 9998765321 11 122211111 233 356677799999999999998877654332211000 001111136778
Q ss_pred EecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcce
Q 001248 529 TALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL 608 (1114)
Q Consensus 529 ~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 608 (1114)
+..++.+..+|..+++......... +.+......... ......+ .+..+++++.+|.++.||..+|+.
T Consensus 196 ~~~~g~v~ald~~tG~~~W~~~~~~---------~~g~~~~~~~~~-~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~ 263 (377)
T TIGR03300 196 GFAGGKLVALDLQTGQPLWEQRVAL---------PKGRTELERLVD-VDGDPVV--DGGQVYAVSYQGRVAALDLRSGRV 263 (377)
T ss_pred ECCCCEEEEEEccCCCEeeeecccc---------CCCCCchhhhhc-cCCccEE--ECCEEEEEEcCCEEEEEECCCCcE
Confidence 8888999999998876554322110 000000000000 0000001 134677788899999999999987
Q ss_pred EEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 609 LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 609 ~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
+....... ..... .++..+++++.+|.+..+|..++
T Consensus 264 ~W~~~~~~----~~~p~--~~~~~vyv~~~~G~l~~~d~~tG 299 (377)
T TIGR03300 264 LWKRDASS----YQGPA--VDDNRLYVTDADGVVVALDRRSG 299 (377)
T ss_pred EEeeccCC----ccCce--EeCCEEEEECCCCeEEEEECCCC
Confidence 77665221 11222 24567777778888888887666
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.9e-08 Score=119.81 Aligned_cols=261 Identities=9% Similarity=0.045 Sum_probs=163.5
Q ss_pred EEEEEccC-cceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEE
Q 001248 755 SRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYV 833 (1114)
Q Consensus 755 ~~l~~s~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l 833 (1114)
..++++++ ++.+++-..++.|++|+........-+. .. ......|..-. ..-.....+++++++..|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~---~g---~~G~~dG~~~~------a~f~~P~GIavd~~gn~L 638 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGS---TG---EEGLRDGSFED------ATFNRPQGLAYNAKKNLL 638 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEcc---CC---CcCCCCCchhc------cccCCCcEEEEeCCCCEE
Confidence 46788764 5666666777889988865321100000 00 00000111100 123346789999998877
Q ss_pred EEEe--CCeEEEEEcCCCccccccCC----------C-------CCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceE
Q 001248 834 MSAS--GGKISLFNMMTFKTMATFMP----------P-------PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV 894 (1114)
Q Consensus 834 ~~~~--dg~i~iwd~~~~~~~~~~~~----------~-------~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~ 894 (1114)
.++. ++.|+++|..++. +.++.+ . -.....++|+|+++.++++.+.++.|++||..++..
T Consensus 639 YVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v 717 (1057)
T PLN02919 639 YVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT 717 (1057)
T ss_pred EEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE
Confidence 6665 5789999987644 222211 0 123467999996677778778889999999987654
Q ss_pred EEeecc---------c------ccCeeEEEEcCCCCEE-EEEeCCCcEEEEeCCCCcccccc--------cc-ccC--CC
Q 001248 895 KSKLKG---------H------SKRITGLAFSHALNVL-VSSGADSQLCVWSSDGWEKQKNR--------FL-QIP--TG 947 (1114)
Q Consensus 895 ~~~l~~---------h------~~~V~~l~~s~d~~~l-~s~s~D~~v~iwd~~~~~~~~~~--------~~-~~~--~~ 947 (1114)
. .+.+ + -...++|+|+|++++| ++-+.++.|++||+.++...... .+ ... .+
T Consensus 718 ~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG 796 (1057)
T PLN02919 718 R-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDG 796 (1057)
T ss_pred E-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCC
Confidence 2 2211 1 1235679999999854 55566789999999875421100 00 000 00
Q ss_pred C--CCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCCCceeeeeecC-----------CCCcCeeEEEECCCCCEEEEE
Q 001248 948 R--TPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPR-----------ESSAPITHATFSCDSQLVYAC 1013 (1114)
Q Consensus 948 ~--~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~-----------~h~~~v~~l~~s~dg~~l~s~ 1013 (1114)
. .........++++++|..+++ ..++.|++||..++......... +.-.....|+++++|+++++-
T Consensus 797 ~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaD 876 (1057)
T PLN02919 797 VGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVAD 876 (1057)
T ss_pred chhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEE
Confidence 0 000123468999999987777 68899999999887665332111 122367899999999988888
Q ss_pred EcCCeEEEEEcCCCee
Q 001248 1014 FLDATVCVFSAANLKL 1029 (1114)
Q Consensus 1014 s~Dg~I~vwd~~~~~~ 1029 (1114)
+.+++|++||+.+++.
T Consensus 877 t~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 877 TNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCCEEEEEECCCCcc
Confidence 8899999999999875
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-07 Score=118.97 Aligned_cols=257 Identities=9% Similarity=0.078 Sum_probs=161.6
Q ss_pred ccEEEEeeCCC-EEEEEe-CCeEEEEEcCCCccccccCC--------------CCCCeEEEEEecCCCcEEEEE-eCCCc
Q 001248 821 VPCFALSKNDS-YVMSAS-GGKISLFNMMTFKTMATFMP--------------PPPAATFLAFHPQDNNIIAIG-MDDSS 883 (1114)
Q Consensus 821 v~~v~~s~d~~-~l~~~~-dg~i~iwd~~~~~~~~~~~~--------------~~~~i~~l~~sp~d~~~la~g-~~dg~ 883 (1114)
...+++++++. .+++-. ++.|++||... ..+..+.+ .-.....+++++ +++.|+++ ..++.
T Consensus 570 P~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 570 PGKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHA 647 (1057)
T ss_pred CceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCce
Confidence 35688987644 444444 68899999754 43333321 112357899998 66655444 45678
Q ss_pred EEEEEcccceEEEeeccc-----------------ccCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCcccccc---cc
Q 001248 884 IQIYNVRVDEVKSKLKGH-----------------SKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNR---FL 942 (1114)
Q Consensus 884 v~iwd~~~~~~~~~l~~h-----------------~~~V~~l~~s~-d~~~l~s~s~D~~v~iwd~~~~~~~~~~---~~ 942 (1114)
|+++|+.++.. .++.+- -..-++|+|+| ++.++++.+.++.|++||..++...... ..
T Consensus 648 Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~ 726 (1057)
T PLN02919 648 LREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYE 726 (1057)
T ss_pred EEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcc
Confidence 99999887653 333210 11235799999 5666777788899999998775432100 00
Q ss_pred ccCCCCC---CCCCCceEEEEccCCcEEEE--EeCCeEEEEEcCCCceeeeee-----------cC--------CCCcCe
Q 001248 943 QIPTGRT---PTAQSDTRVQFHQDQIHFLV--VHETQLAIFETTKLECVKQWV-----------PR--------ESSAPI 998 (1114)
Q Consensus 943 ~~~~~~~---~~~~~i~~v~fspdg~~l~~--~~d~~i~iwd~~~~~~~~~~~-----------~~--------~h~~~v 998 (1114)
....+.. ........++|+|+|+.|++ ..++.|++||+.++....... .. ..-...
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence 0001110 01124578999999986655 467899999998765321110 00 011235
Q ss_pred eEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCc-ccCCCC--CCCCccceEEEecCCCCCeEEEEeCCCcEEEE
Q 001248 999 THATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSA-YLPAGV--SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1075 (1114)
Q Consensus 999 ~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~-~~~~~~--~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW 1075 (1114)
..++++++|.++++-+.+++|++||..++.......... ....|. ...--.|..+++++ +|+++++-+.++.|++|
T Consensus 807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvi 885 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYL 885 (1057)
T ss_pred ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEE
Confidence 689999999988888889999999999887664332110 001110 01112456889998 68888888899999999
Q ss_pred eccCCC
Q 001248 1076 EPLESE 1081 (1114)
Q Consensus 1076 ~i~~~~ 1081 (1114)
++.+++
T Consensus 886 d~~~~~ 891 (1057)
T PLN02919 886 DLNKGE 891 (1057)
T ss_pred ECCCCc
Confidence 999876
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.7e-08 Score=96.09 Aligned_cols=193 Identities=19% Similarity=0.120 Sum_probs=135.4
Q ss_pred CCCCceEEEEcC---CCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCC
Q 001248 357 QGSSPMSMDFHP---VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 433 (1114)
Q Consensus 357 h~~~v~~v~~sp---dg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 433 (1114)
.+..+..+.|.- +|...|+-+...|.|.++.....+.... ++ ++.. ..-....-.++.|++.|.
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~--L~---------~ls~--~ki~~~~~lslD~~~~~~ 134 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVH--LR---------GLSS--KKISVVEALSLDISTSGT 134 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeee--ec---------ccch--hhhhheeeeEEEeeccCc
Confidence 345566666653 4554566677788999988765433321 00 0000 000001245788999999
Q ss_pred eEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCC-CCcceeE-eeccccC
Q 001248 434 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQYI-FEGHEAP 511 (1114)
Q Consensus 434 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~-~~~h~~~ 511 (1114)
.++++..+|.+.+-+..... +....++++|.-..+...|+..... ++.+||.|+.+..||++ .++.+.. .+.|...
T Consensus 135 ~i~vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~G 212 (339)
T KOG0280|consen 135 KIFVSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSG 212 (339)
T ss_pred eEEEEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeecc
Confidence 99999999999855544432 4444478899999999999987776 79999999999999998 4455544 4568899
Q ss_pred EEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCC
Q 001248 512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG 565 (1114)
Q Consensus 512 v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g 565 (1114)
|.++.-++ +.+.++++|+.|-.|++||.++..+...-....+.|..+..+|.-
T Consensus 213 V~SI~ss~-~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~ 265 (339)
T KOG0280|consen 213 VVSIYSSP-PKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEI 265 (339)
T ss_pred eEEEecCC-CCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchh
Confidence 98887544 455799999999999999999876665555555677777777653
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.6e-07 Score=105.78 Aligned_cols=156 Identities=10% Similarity=0.023 Sum_probs=97.9
Q ss_pred CCceEEEEcCCCCeEEEEEec---CCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeE
Q 001248 359 SSPMSMDFHPVQQTLLLVGTN---VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 435 (1114)
Q Consensus 359 ~~v~~v~~spdg~~ll~tg~~---dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 435 (1114)
+......|||||+++++..+. +..|+++|+.+++... +....+.+...+|||||+.|
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt~~~g~~~~~~~SPDG~~l 247 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IASSQGMLVVSDVSKDGSKL 247 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------EecCCCcEEeeEECCCCCEE
Confidence 477899999999964443333 3569999999887654 22334456778899999988
Q ss_pred EEEe-CC--CeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCC--CEEEEeCCCCcceeEeecccc
Q 001248 436 GVAY-SR--HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAKQYIFEGHEA 510 (1114)
Q Consensus 436 as~~-~d--g~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~h~~ 510 (1114)
+... .+ ..|.++|+.+++. . .+..+........|+|||+.+++.+. ..+ .|.+.|+.+++..+... ...
T Consensus 248 a~~~~~~g~~~Iy~~dl~~g~~-~---~LT~~~~~d~~p~~SPDG~~I~F~Sd-r~g~~~Iy~~dl~~g~~~rlt~-~g~ 321 (419)
T PRK04043 248 LLTMAPKGQPDIYLYDTNTKTL-T---QITNYPGIDVNGNFVEDDKRIVFVSD-RLGYPNIFMKKLNSGSVEQVVF-HGK 321 (419)
T ss_pred EEEEccCCCcEEEEEECCCCcE-E---EcccCCCccCccEECCCCCEEEEEEC-CCCCceEEEEECCCCCeEeCcc-CCC
Confidence 7643 23 4678888877753 3 24334433445689999997544443 333 58888988777533322 111
Q ss_pred CEEEEeeccCCCceEEEEEecC---------CeEEEEEcCCCC
Q 001248 511 PVYSVCPHHKENIQFIFSTALD---------GKIKAWLYDNLG 544 (1114)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~d---------~~i~~wd~~~~~ 544 (1114)
. ...| +++|+.++..+.. ..|.+.|+.++.
T Consensus 322 ~--~~~~--SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~ 360 (419)
T PRK04043 322 N--NSSV--STYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY 360 (419)
T ss_pred c--CceE--CCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC
Confidence 1 1355 4556766666543 256666766544
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.8e-07 Score=104.20 Aligned_cols=113 Identities=12% Similarity=0.318 Sum_probs=84.6
Q ss_pred CCCceEEEEcCCCCeEEEEEec----CCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCC
Q 001248 358 GSSPMSMDFHPVQQTLLLVGTN----VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 433 (1114)
Q Consensus 358 ~~~v~~v~~spdg~~ll~tg~~----dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 433 (1114)
...-+-..|+|... ++|+++. .|.|.||- ++|+..... ...- .+++++|+|..-
T Consensus 15 davsti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~V-----------------t~P~---hatSLCWHpe~~ 72 (1416)
T KOG3617|consen 15 DAVSTISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDV-----------------TYPV---HATSLCWHPEEF 72 (1416)
T ss_pred cccccccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCccc-----------------ccce---ehhhhccChHHH
Confidence 34445678999888 5777654 46788874 455533210 0111 356699999999
Q ss_pred eEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCC
Q 001248 434 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT 497 (1114)
Q Consensus 434 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~ 497 (1114)
.|+.|-.-|.+.+|...+.+. ......|..+|..+.||++|. .++|+..-|.|.+|...
T Consensus 73 vLa~gwe~g~~~v~~~~~~e~---htv~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 73 VLAQGWEMGVSDVQKTNTTET---HTVVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred HHhhccccceeEEEecCCcee---eeeccCCCCCceeEEecCCCC--eEEEcCCCceeEEEEee
Confidence 999999999999999887542 224557999999999999999 89999999999999865
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.1e-09 Score=124.91 Aligned_cols=198 Identities=19% Similarity=0.351 Sum_probs=154.9
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
+-..|.++.=+|...+ .+||+.||.|++|.+..+..+.. |+ -.|. ..|+.+.|+.+|..+.
T Consensus 2207 ~v~~v~r~~sHp~~~~-Yltgs~dgsv~~~~w~~~~~v~~-----~r------------t~g~-s~vtr~~f~~qGnk~~ 2267 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPY-YLTGSQDGSVRMFEWGHGQQVVC-----FR------------TAGN-SRVTRSRFNHQGNKFG 2267 (2439)
T ss_pred ccCceeeecCCCCCce-EEecCCCceEEEEeccCCCeEEE-----ee------------ccCc-chhhhhhhcccCCcee
Confidence 4578899999999996 88999999999999998877653 22 1233 7899999999999999
Q ss_pred EEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEec---CCCCEEEEeCCCC-cceeEeeccccCE
Q 001248 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG---DDKTIKVWDATNG-AKQYIFEGHEAPV 512 (1114)
Q Consensus 437 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~---~d~~i~iwd~~~~-~~~~~~~~h~~~v 512 (1114)
.+..||.+.+|.+.. +.....+.|+....+.+|-. . .+++++ .++.+.+||..-. ..-..-..|.+.+
T Consensus 2268 i~d~dg~l~l~q~~p----k~~~s~qchnk~~~Df~Fi~--s--~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~ga 2339 (2439)
T KOG1064|consen 2268 IVDGDGDLSLWQASP----KPYTSWQCHNKALSDFRFIG--S--LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGA 2339 (2439)
T ss_pred eeccCCceeecccCC----cceeccccCCccccceeeee--h--hhhccccCCCCCcccchhcccCcccceeeeecCCCc
Confidence 999999999999883 23336778999999999986 3 466665 4678999996532 2112227899999
Q ss_pred EEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEE
Q 001248 513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 592 (1114)
Q Consensus 513 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~ 592 (1114)
+++++.|.. +++++||.+|.|++||++..+.+..+.. ++ ...+++++
T Consensus 2340 T~l~~~P~~--qllisggr~G~v~l~D~rqrql~h~~~~------------------------------~~-~~~~f~~~ 2386 (2439)
T KOG1064|consen 2340 TVLAYAPKH--QLLISGGRKGEVCLFDIRQRQLRHTFQA------------------------------LD-TREYFVTG 2386 (2439)
T ss_pred eEEEEcCcc--eEEEecCCcCcEEEeehHHHHHHHHhhh------------------------------hh-hhheeecc
Confidence 999976655 7999999999999999987666554432 11 12369999
Q ss_pred eCCCeEEEEECCCcceEEEecc
Q 001248 593 GDDFSIKFWDMDSVQLLTSIDA 614 (1114)
Q Consensus 593 ~~dg~i~iwd~~~~~~~~~~~~ 614 (1114)
+..|.++||++.....+..+..
T Consensus 2387 ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2387 SSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred CcccceEEEEccccchhhcCch
Confidence 9999999999998877777753
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.3e-09 Score=111.06 Aligned_cols=210 Identities=13% Similarity=0.193 Sum_probs=154.1
Q ss_pred CCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCC-------CccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 001248 816 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT-------FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY 887 (1114)
Q Consensus 816 ~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~-------~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iw 887 (1114)
+|...|..++--.+.+.+++++ |.+|++|.++. ..+..+++.|..+|..+.|-. +.+.++++ ||-|++|
T Consensus 733 GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~Sc--D~giHlW 809 (1034)
T KOG4190|consen 733 GHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIASC--DGGIHLW 809 (1034)
T ss_pred CcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceeeec--cCcceee
Confidence 4888899887666777777777 99999999863 335677889999999999998 77777754 8899999
Q ss_pred EcccceEEEeecc--cccCeeEEEEcC--CCCEEEE-EeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEcc
Q 001248 888 NVRVDEVKSKLKG--HSKRITGLAFSH--ALNVLVS-SGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 962 (1114)
Q Consensus 888 d~~~~~~~~~l~~--h~~~V~~l~~s~--d~~~l~s-~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fsp 962 (1114)
|.--++++..+.. ..+.+..+..-+ |...+.. ++...+|+++|....+-.....+....+. ...+++++..+
T Consensus 810 DPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~P---na~~R~iaVa~ 886 (1034)
T KOG4190|consen 810 DPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGP---NALTRAIAVAD 886 (1034)
T ss_pred cccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCC---chheeEEEecc
Confidence 9988877764422 223344444333 3444444 47889999999988654333222222222 14678999999
Q ss_pred CCcEEEEE-eCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEE-EEcCCCeeeEEeC
Q 001248 963 DQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCV-FSAANLKLRCRIN 1034 (1114)
Q Consensus 963 dg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~v-wd~~~~~~~~~~~ 1034 (1114)
.|++++++ +.|.|.+.|.++|+.+..|.+- .-....++ .|..+.|+....|.++.| |...+|....+.+
T Consensus 887 ~GN~lAa~LSnGci~~LDaR~G~vINswrpm--ecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~k 957 (1034)
T KOG4190|consen 887 KGNKLAAALSNGCIAILDARNGKVINSWRPM--ECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDK 957 (1034)
T ss_pred CcchhhHHhcCCcEEEEecCCCceeccCCcc--cchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccC
Confidence 99999995 8999999999999999888631 22233333 567778888889999999 9999998887766
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.6e-07 Score=89.32 Aligned_cols=207 Identities=15% Similarity=0.147 Sum_probs=139.2
Q ss_pred EEEeeCCCEEEEEeCCeEEEEEcCCC--ccccc---cCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEee
Q 001248 824 FALSKNDSYVMSASGGKISLFNMMTF--KTMAT---FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL 898 (1114)
Q Consensus 824 v~~s~d~~~l~~~~dg~i~iwd~~~~--~~~~~---~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l 898 (1114)
++.+.||+.||+..|..|.|=..++. ..+.+ -+.....-+.++||| |+.+||.+...|+|++||+....+ ..+
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~l-f~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSEL-FVI 80 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEeccccee-EEc
Confidence 57789999999999998888766532 11111 222334568899999 999999999999999999985433 233
Q ss_pred cc-------cccCeeEEEEcCCC------CEEEEEeCCCcEEEEeCCCCccccccccc--cCCCCCCCCCCceEEEEccC
Q 001248 899 KG-------HSKRITGLAFSHAL------NVLVSSGADSQLCVWSSDGWEKQKNRFLQ--IPTGRTPTAQSDTRVQFHQD 963 (1114)
Q Consensus 899 ~~-------h~~~V~~l~~s~d~------~~l~s~s~D~~v~iwd~~~~~~~~~~~~~--~~~~~~~~~~~i~~v~fspd 963 (1114)
.. -..+|.++.|.+-. ..|.+-..+|.++=|-+..+......... .+..+. +..|.++.++|.
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~y--p~Gi~~~vy~p~ 158 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHY--PHGINSAVYHPK 158 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccC--CCceeEEEEcCC
Confidence 22 23567777776431 24667778888887776432211111111 111222 258999999999
Q ss_pred CcEEEEEe----C--------CeEEEEEcCCCceeee---------------------e-----ec-CCCCcCeeEEEEC
Q 001248 964 QIHFLVVH----E--------TQLAIFETTKLECVKQ---------------------W-----VP-RESSAPITHATFS 1004 (1114)
Q Consensus 964 g~~l~~~~----d--------~~i~iwd~~~~~~~~~---------------------~-----~~-~~h~~~v~~l~~s 1004 (1114)
.++|++++ + -.+..|.+-++..-.. . .. ......|..|..|
T Consensus 159 h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlS 238 (282)
T PF15492_consen 159 HRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLS 238 (282)
T ss_pred CCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEEC
Confidence 99988842 1 1466777544321100 0 00 1125678999999
Q ss_pred CCCCEEEEEEcCCeEEEEEcCCCeeeEEeC
Q 001248 1005 CDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 1005 ~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
|||+.||+...+|.|.+|++.+.++.....
T Consensus 239 Pdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 239 PDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred CCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 999999999999999999999999988776
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.3e-08 Score=102.98 Aligned_cols=171 Identities=17% Similarity=0.133 Sum_probs=115.6
Q ss_pred CCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEE
Q 001248 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 438 (1114)
Q Consensus 359 ~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 438 (1114)
-.++.+.++++|+ |+|++..+....++++...... .+.++.. .+..-...++.+..+......-.+
T Consensus 63 ~a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~~----~kl~~~~---------~v~~~~~ai~~~~~~~sv~v~dka 128 (390)
T KOG3914|consen 63 LAPALVLTSDSGR-LVAVATSSKQRAVFDYRENPKG----AKLLDVS---------CVPKRPTAISFIREDTSVLVADKA 128 (390)
T ss_pred ccccccccCCCce-EEEEEeCCCceEEEEEecCCCc----ceeeeEe---------ecccCcceeeeeeccceEEEEeec
Confidence 3456677788888 6888888888778777654431 1111100 111112234444433332222233
Q ss_pred eCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEe-eccccCEEEEee
Q 001248 439 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCP 517 (1114)
Q Consensus 439 ~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~ 517 (1114)
++...+.+|....+.+. .+-||-..+..|+|+||++ +++|+..|..|+|-....--.+..+ -||...|..++.
T Consensus 129 gD~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl 202 (390)
T KOG3914|consen 129 GDVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISL 202 (390)
T ss_pred CCceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeeeee
Confidence 45556667776654433 3568999999999999999 7999999999999877665555544 579999999986
Q ss_pred ccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCC
Q 001248 518 HHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP 552 (1114)
Q Consensus 518 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 552 (1114)
... ..|+++|.|+++++||+.+++.+.++...
T Consensus 203 ~~~---~~LlS~sGD~tlr~Wd~~sgk~L~t~dl~ 234 (390)
T KOG3914|consen 203 TDN---YLLLSGSGDKTLRLWDITSGKLLDTCDLS 234 (390)
T ss_pred ccC---ceeeecCCCCcEEEEecccCCcccccchh
Confidence 432 57999999999999999999887655443
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.7e-08 Score=109.08 Aligned_cols=303 Identities=13% Similarity=0.155 Sum_probs=186.4
Q ss_pred ccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCC--CCCeeEEEEcCCC
Q 001248 355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP--GVSVNRVIWSPDG 432 (1114)
Q Consensus 355 ~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h--~~~V~~l~~spdg 432 (1114)
+.-..++.++..+|.|+- +|+++.-| +.+-|+...-... .+..| .-.|-.+.|||..
T Consensus 21 l~v~~~~~a~si~p~grd-i~lAsr~g-l~i~dld~p~~pp-------------------r~l~h~tpw~vad~qws~h~ 79 (1081)
T KOG0309|consen 21 LKVDGGFNAVSINPSGRD-IVLASRQG-LYIIDLDDPFTPP-------------------RWLHHITPWQVADVQWSPHP 79 (1081)
T ss_pred EEecCcccceeeccccch-hhhhhhcC-eEEEeccCCCCCc-------------------eeeeccCcchhcceecccCC
Confidence 345678899999999997 77766554 4445554321110 11112 2357778888853
Q ss_pred C--eEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCc-ceeEeeccc
Q 001248 433 S--LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFEGHE 509 (1114)
Q Consensus 433 ~--~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~h~ 509 (1114)
. +-++........+|++.....-.....+.||...|+.+.|.|.... ++++++.|-.+..||+++.. .+..+....
T Consensus 80 a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pd-Vlatcsvdt~vh~wd~rSp~~p~ys~~~w~ 158 (1081)
T KOG0309|consen 80 AKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPD-VLATCSVDTYVHAWDMRSPHRPFYSTSSWR 158 (1081)
T ss_pred CCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCc-ceeeccccccceeeeccCCCcceeeeeccc
Confidence 3 3344444555779998754443444468899999999999998887 79999999999999998754 456665555
Q ss_pred cCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCe-eeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCE
Q 001248 510 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR-VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 588 (1114)
Q Consensus 510 ~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~ 588 (1114)
..-..+.|+... + .+.+.+..+.|.+||.+.+... ..+..+...+..+.|..-- ...
T Consensus 159 s~asqVkwnyk~-p-~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~--------------------~s~ 216 (1081)
T KOG0309|consen 159 SAASQVKWNYKD-P-NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFK--------------------YSE 216 (1081)
T ss_pred ccCceeeecccC-c-chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhh--------------------hhh
Confidence 666778887654 3 3445566778999999977544 3555555555555543321 124
Q ss_pred EEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcC-----------CCCEEEEEeCCCcEEEEEccCCccceeec
Q 001248 589 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-----------DGCLLAVSTNDNGIKILATSDGIRLLRTF 657 (1114)
Q Consensus 589 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-----------d~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 657 (1114)
+.+.+.|++|+.||.............. ..+|..-.+.| .+..+-.-.-+.....|+..++.+.+..+
T Consensus 217 ~~s~~~d~tvkfw~y~kSt~e~~~~vtt-~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F 295 (1081)
T KOG0309|consen 217 IMSSSNDGTVKFWDYSKSTTESKRTVTT-NFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTF 295 (1081)
T ss_pred hcccCCCCceeeecccccccccceeccc-cCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeee
Confidence 7888999999999986543221111111 11233334444 22222222223444556666777788889
Q ss_pred cccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEecc
Q 001248 658 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 733 (1114)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~ 733 (1114)
.||.+.+..-. +...+ .-+.......-.|++=+.|..+++|.+..
T Consensus 296 ~GH~D~V~eFl------WR~r~-------------------------e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 296 VGHDDVVLEFL------WRKRK-------------------------ECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cCcchHHHHHh------hhhcc-------------------------cccCCCCccceeEEEeecCCceEeeeccH
Confidence 99887654210 00000 00000111234688999999999999864
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.8e-08 Score=101.39 Aligned_cols=158 Identities=13% Similarity=0.114 Sum_probs=109.6
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE----EeCCeEEEEEc
Q 001248 905 ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV----VHETQLAIFET 980 (1114)
Q Consensus 905 V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~----~~d~~i~iwd~ 980 (1114)
...+..++++++||++..+....++++..... ...+........ .-+.+.|..+.....+ +....+.+|..
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~-~~kl~~~~~v~~----~~~ai~~~~~~~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK-GAKLLDVSCVPK----RPTAISFIREDTSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCC-cceeeeEeeccc----CcceeeeeeccceEEEEeecCCceeeeeecc
Confidence 44566778888888888888877777766443 222222222211 2345556555554444 24456777777
Q ss_pred CCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCC
Q 001248 981 TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEP 1060 (1114)
Q Consensus 981 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~ 1060 (1114)
..+.+...+ ||-+.++.++||||+++|+++..|..|+|-.+..-..+..+- -||..- |. .++.- ++
T Consensus 140 ~~~~~~~~l---GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc------lGH~eF-VS--~isl~--~~ 205 (390)
T KOG3914|consen 140 DSGRCEPIL---GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFC------LGHKEF-VS--TISLT--DN 205 (390)
T ss_pred cccCcchhh---hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhc------cccHhh-ee--eeeec--cC
Confidence 766555443 899999999999999999999999999998887766554433 344333 66 34443 46
Q ss_pred CeEEEEeCCCcEEEEeccCCC
Q 001248 1061 NEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1061 ~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
+.|++|+.|++|++||+.+|+
T Consensus 206 ~~LlS~sGD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 206 YLLLSGSGDKTLRLWDITSGK 226 (390)
T ss_pred ceeeecCCCCcEEEEecccCC
Confidence 789999999999999999999
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.4e-08 Score=119.94 Aligned_cols=200 Identities=15% Similarity=0.228 Sum_probs=153.7
Q ss_pred ccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEe
Q 001248 416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495 (1114)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd 495 (1114)
+..|-..|.++.=+|...+-++|+.||.|++|....++.+....+. |. ..|+.+.|+.+|+ .+..+..||.+.+|.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCC--ceeeeccCCceeecc
Confidence 3445568899999999999999999999999999998877655443 33 8899999999999 678888899999999
Q ss_pred CCCCcceeEeeccccCEEEEeeccCCCceEEEEEe---cCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeee
Q 001248 496 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA---LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF 572 (1114)
Q Consensus 496 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~---~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~ 572 (1114)
+. .+.....+.|......+.|-. ..+++.+ .++.+.+||...... ...+...
T Consensus 2280 ~~-pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~--------------------~s~v~~~ 2334 (2439)
T KOG1064|consen 2280 AS-PKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPM--------------------NSLVHTC 2334 (2439)
T ss_pred cC-CcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcc--------------------cceeeee
Confidence 66 666777788888888777644 3566664 367899998753211 1222234
Q ss_pred cccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCcc
Q 001248 573 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR 652 (1114)
Q Consensus 573 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~ 652 (1114)
+++..+++++-|....+++|+.+|.|++||++..+.++.+.. +. ...++++|+..|.++||++... .
T Consensus 2335 H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~-~ 2401 (2439)
T KOG1064|consen 2335 HDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEF-G 2401 (2439)
T ss_pred cCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEcccc-c
Confidence 455667777777778999999999999999998887776653 23 4578999999999999998766 4
Q ss_pred ceeec
Q 001248 653 LLRTF 657 (1114)
Q Consensus 653 ~~~~~ 657 (1114)
.+..+
T Consensus 2402 ll~~~ 2406 (2439)
T KOG1064|consen 2402 LLHTF 2406 (2439)
T ss_pred hhhcC
Confidence 44443
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.1e-06 Score=92.71 Aligned_cols=225 Identities=13% Similarity=0.106 Sum_probs=139.7
Q ss_pred CCeEEEEEcCCCccccccCCC--CCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCC
Q 001248 838 GGKISLFNMMTFKTMATFMPP--PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN 915 (1114)
Q Consensus 838 dg~i~iwd~~~~~~~~~~~~~--~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~ 915 (1114)
+|+|..||..+++.+...... .....+..+ + ++..+++++.++.|+.||..+|+.+..... ...+.... ..++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-P-DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-E-ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEE-E-eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence 578999999999888776531 122222233 2 345666678999999999999998877764 23222222 22455
Q ss_pred EEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCeEEEEEcCCCceeeeeecCCC
Q 001248 916 VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRES 994 (1114)
Q Consensus 916 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h 994 (1114)
.++.++.|+.|..+|..+++..-.......+.. ..........++..++++ .++.|..+|.++|+.+........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA----GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC----STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred ccccccceeeeEecccCCcceeeeecccccccc----ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 677777888999999988876433111111110 111222333346666664 599999999999999877764221
Q ss_pred C--c------CeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEE
Q 001248 995 S--A------PITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG 1066 (1114)
Q Consensus 995 ~--~------~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~ 1066 (1114)
. . .+..-....++ .++.++.++.+.-+|+.+++.+-+.. ..+ .. . .... ++..|+.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-----~~~-----~~--~-~~~~-~~~~l~~~ 218 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-----ISG-----IY--S-LPSV-DGGTLYVT 218 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-----SS------EC--E-CEEC-CCTEEEEE
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-----CCC-----cc--C-Ccee-eCCEEEEE
Confidence 1 1 11222333345 77777778854444999999664322 111 11 1 1223 46788888
Q ss_pred eCCCcEEEEeccCCCCccc
Q 001248 1067 LSDGGVHVFEPLESEGKWG 1085 (1114)
Q Consensus 1067 ~~Dg~v~vW~i~~~~~~~~ 1085 (1114)
+.++.|..||+.+|+..|.
T Consensus 219 ~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 219 SSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp ETTTEEEEEETTTTEEEEE
T ss_pred eCCCEEEEEECCCCCEEeE
Confidence 8999999999999998774
|
... |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=6e-06 Score=93.87 Aligned_cols=310 Identities=11% Similarity=0.060 Sum_probs=170.5
Q ss_pred EEEEecCCCCEEEEeCCCCcceeEeecccc--CEE-----EEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCC
Q 001248 481 CVITCGDDKTIKVWDATNGAKQYIFEGHEA--PVY-----SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG 553 (1114)
Q Consensus 481 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~--~v~-----~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 553 (1114)
.++.++.++.+..+|.++|+.+....-... ... .+.-.+.-++..++.++.++.+..+|.++++.........
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 466677788999999999998876542210 000 0000011123467788889999999999988877665433
Q ss_pred CeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCC---CcCeEEEcCCC
Q 001248 554 RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP---ASPRIRFNKDG 630 (1114)
Q Consensus 554 ~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~v~~~~~s~d~ 630 (1114)
....+..+ .+..++.++.++.++.+|..+|+.+.......... ...+... .+
T Consensus 151 ~~~ssP~v-----------------------~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~ 205 (394)
T PRK11138 151 EALSRPVV-----------------------SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AF 205 (394)
T ss_pred ceecCCEE-----------------------ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--EC
Confidence 21111111 12347778889999999999999988876432100 0011111 23
Q ss_pred CEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccc
Q 001248 631 CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRS 710 (1114)
Q Consensus 631 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (1114)
..++.++.+|.+..+|..+|+...+. ..... .+
T Consensus 206 ~~v~~~~~~g~v~a~d~~~G~~~W~~-~~~~~---------------~~------------------------------- 238 (394)
T PRK11138 206 GGAIVGGDNGRVSAVLMEQGQLIWQQ-RISQP---------------TG------------------------------- 238 (394)
T ss_pred CEEEEEcCCCEEEEEEccCChhhhee-ccccC---------------CC-------------------------------
Confidence 45677788899999998888432211 00000 00
Q ss_pred cCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCC
Q 001248 711 LADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGK 790 (1114)
Q Consensus 711 ~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 790 (1114)
.. ..-+++++ ...++ + .+..+++++.+|.+..+|..+++
T Consensus 239 ----------~~-~~~~~~~~------------------~~sP~----v--~~~~vy~~~~~g~l~ald~~tG~------ 277 (394)
T PRK11138 239 ----------AT-EIDRLVDV------------------DTTPV----V--VGGVVYALAYNGNLVALDLRSGQ------ 277 (394)
T ss_pred ----------cc-chhccccc------------------CCCcE----E--ECCEEEEEEcCCeEEEEECCCCC------
Confidence 00 00000000 00010 0 12335555566666666554221
Q ss_pred ccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCC-CCeEEEEEe
Q 001248 791 ATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAFH 868 (1114)
Q Consensus 791 ~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s 868 (1114)
.+|....+. ...+.. ++..+..++ +|.+..+|..+++.+....... ....+.++.
T Consensus 278 -------~~W~~~~~~--------------~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~ 334 (394)
T PRK11138 278 -------IVWKREYGS--------------VNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY 334 (394)
T ss_pred -------EEEeecCCC--------------ccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE
Confidence 134322110 111222 334444444 8999999999887765433211 122223332
Q ss_pred cCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeE-EEEcCCCCEEEEEeCCCcEEEEeC
Q 001248 869 PQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG-LAFSHALNVLVSSGADSQLCVWSS 931 (1114)
Q Consensus 869 p~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~-l~~s~d~~~l~s~s~D~~v~iwd~ 931 (1114)
+..|++++.||.|+..|..+|+.+...+-....+.+ ..+ .+..|+.++.||.|..++.
T Consensus 335 ---~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 335 ---NGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred ---CCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 346777899999999999999988776543333332 222 2457888899999887754
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.7e-06 Score=84.00 Aligned_cols=234 Identities=11% Similarity=0.030 Sum_probs=156.3
Q ss_pred CCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCc
Q 001248 629 DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDV 708 (1114)
Q Consensus 629 d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (1114)
...+|+.|+.-|.+.+|...+.....+....+...+... -
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~----------------------------------------~ 122 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLV----------------------------------------K 122 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhh----------------------------------------h
Confidence 456889999999999999887644444433332211100 0
Q ss_pred cccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCC
Q 001248 709 RSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSS 788 (1114)
Q Consensus 709 ~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 788 (1114)
........+..++.|.++++.++........... ..-.+.++++++|++++++.+....|..|.+........
T Consensus 123 r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~-------~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~ 195 (344)
T KOG4532|consen 123 RYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHN-------QNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIE 195 (344)
T ss_pred hhcccccceeeccCCcceeEEEEecCcccceeec-------cccceeeeEEcCCCceEEEecCCCcceEEEeCCccceee
Confidence 0111233456778888899888876443332221 112378899999999999999999999998865322110
Q ss_pred CCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCcccc-----ccCCCCCCe
Q 001248 789 GKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMA-----TFMPPPPAA 862 (1114)
Q Consensus 789 ~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~-----~~~~~~~~i 862 (1114)
..... .....--+..|+.....+|++. ||++.|||+....... +-..|.+.+
T Consensus 196 --------------------~~~~a--~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~ 253 (344)
T KOG4532|consen 196 --------------------NIYEA--PTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAF 253 (344)
T ss_pred --------------------eeEec--ccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCce
Confidence 10011 1334445778999999999999 9999999998654332 234588899
Q ss_pred EEEEEecCCC--cEEEEEeCCCcEEEEEcccceEEEee-------ccccc-CeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001248 863 TFLAFHPQDN--NIIAIGMDDSSIQIYNVRVDEVKSKL-------KGHSK-RITGLAFSHALNVLVSSGADSQLCVWSSD 932 (1114)
Q Consensus 863 ~~l~~sp~d~--~~la~g~~dg~v~iwd~~~~~~~~~l-------~~h~~-~V~~l~~s~d~~~l~s~s~D~~v~iwd~~ 932 (1114)
+.+.|++ .| .+|...-.-+.+.+.|+.+++..+.+ ..|.. .|+.-.|+.++.-+.+.+++. +.-|++.
T Consensus 254 R~c~Fsl-~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~-~ae~ni~ 331 (344)
T KOG4532|consen 254 RVCRFSL-YGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQ-GAEYNIL 331 (344)
T ss_pred EEEEecC-CCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccchh-hheeecc
Confidence 9999998 54 46666656678999999987644433 22333 388899998888877777665 6778777
Q ss_pred C
Q 001248 933 G 933 (1114)
Q Consensus 933 ~ 933 (1114)
+
T Consensus 332 s 332 (344)
T KOG4532|consen 332 S 332 (344)
T ss_pred c
Confidence 6
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.6e-06 Score=82.39 Aligned_cols=216 Identities=15% Similarity=0.146 Sum_probs=137.4
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEEcccc--eEEEee---cccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccc
Q 001248 865 LAFHPQDNNIIAIGMDDSSIQIYNVRVD--EVKSKL---KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN 939 (1114)
Q Consensus 865 l~~sp~d~~~la~g~~dg~v~iwd~~~~--~~~~~l---~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~ 939 (1114)
++.+. +|++||+- .|..|.|-..+.. ..+.+. +...-.-..++||||+..||.+...|+|+++|+...+....
T Consensus 3 ~~~~~-~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 3 LALSS-DGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVI 80 (282)
T ss_pred eeecC-CCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEc
Confidence 45666 88888865 5777888765542 233333 22333467899999999999999999999999987544322
Q ss_pred cccccCCCCCCCCCCceEEEEccCC-------cEEEEEeCCeEEEEEcCC-----CceeeeeecCC-CCcCeeEEEECCC
Q 001248 940 RFLQIPTGRTPTAQSDTRVQFHQDQ-------IHFLVVHETQLAIFETTK-----LECVKQWVPRE-SSAPITHATFSCD 1006 (1114)
Q Consensus 940 ~~~~~~~~~~~~~~~i~~v~fspdg-------~~l~~~~d~~i~iwd~~~-----~~~~~~~~~~~-h~~~v~~l~~s~d 1006 (1114)
.......+ ....+|..+.|-+-. .+|+...+|.++-|-+.. .+...++.... +...|.++.+.|.
T Consensus 81 ~p~~~~~~--d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~ 158 (282)
T PF15492_consen 81 PPAMSFPG--DLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK 158 (282)
T ss_pred CcccccCC--ccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence 22111111 122467777776532 556668888888777532 23333444333 3778999999999
Q ss_pred CCEEEEEEc----CC-------eEEEEEcCCCeeeEEeCCC---------------------cccCCCCCCCCccceEEE
Q 001248 1007 SQLVYACFL----DA-------TVCVFSAANLKLRCRINPS---------------------AYLPAGVSSSNVHPLVIA 1054 (1114)
Q Consensus 1007 g~~l~s~s~----Dg-------~I~vwd~~~~~~~~~~~~~---------------------~~~~~~~~~~~v~~~~~~ 1054 (1114)
.++|++|+. |+ -+..|.+-++..-...-.. .+...+.....|. .+.
T Consensus 159 h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~--kmS 236 (282)
T PF15492_consen 159 HRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIF--KMS 236 (282)
T ss_pred CCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceE--EEE
Confidence 998877663 11 3677877655443321100 0000111122244 677
Q ss_pred ecCCCCCeEEEEeCCCcEEEEeccCCC--CcccCC
Q 001248 1055 AHPQEPNEFALGLSDGGVHVFEPLESE--GKWGVP 1087 (1114)
Q Consensus 1055 ~~~~d~~~l~s~~~Dg~v~vW~i~~~~--~~~~~~ 1087 (1114)
-+| ||..|++.+.+|.|.+|++++-. ..|...
T Consensus 237 lSP-dg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 237 LSP-DGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred ECC-CCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 788 79999999999999999999866 666653
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.4e-05 Score=90.81 Aligned_cols=211 Identities=9% Similarity=0.006 Sum_probs=120.7
Q ss_pred CCeEEEEEcCCCccccccCCCCCC-----eEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeeccccc-------Ce
Q 001248 838 GGKISLFNMMTFKTMATFMPPPPA-----ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK-------RI 905 (1114)
Q Consensus 838 dg~i~iwd~~~~~~~~~~~~~~~~-----i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~-------~V 905 (1114)
++.+.-+|..+|+.+......... ..+-... ++ .++.++.+|.+..+|..+|+.+........ ..
T Consensus 169 ~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~ 245 (394)
T PRK11138 169 NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRL 245 (394)
T ss_pred CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcc
Confidence 566666666666665544322110 0111122 23 466677889999999999887655431100 01
Q ss_pred eEEEEcC--CCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCC
Q 001248 906 TGLAFSH--ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL 983 (1114)
Q Consensus 906 ~~l~~s~--d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~ 983 (1114)
..+.-+| .+..++.++.++.+..+|..+++..-.... + ....+.. .++..++.+.++.+..+|..++
T Consensus 246 ~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~----~------~~~~~~~-~~~~vy~~~~~g~l~ald~~tG 314 (394)
T PRK11138 246 VDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY----G------SVNDFAV-DGGRIYLVDQNDRVYALDTRGG 314 (394)
T ss_pred cccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC----C------CccCcEE-ECCEEEEEcCCCeEEEEECCCC
Confidence 1111122 245677778899999999998764321111 1 1111111 2344444478899999999998
Q ss_pred ceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeE
Q 001248 984 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEF 1063 (1114)
Q Consensus 984 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l 1063 (1114)
+.+-...... .....+..+ .+.+|+.++.||.|++.|..+|+.+.+.+. ..+ . +.. ..... +..|
T Consensus 315 ~~~W~~~~~~-~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~----~~~--~--~~s-~P~~~---~~~l 379 (394)
T PRK11138 315 VELWSQSDLL-HRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKV----DSS--G--FLS-EPVVA---DDKL 379 (394)
T ss_pred cEEEcccccC-CCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc----CCC--c--cee-CCEEE---CCEE
Confidence 7654322111 111222222 355778899999999999999999887752 111 0 110 11111 3578
Q ss_pred EEEeCCCcEEEEec
Q 001248 1064 ALGLSDGGVHVFEP 1077 (1114)
Q Consensus 1064 ~s~~~Dg~v~vW~i 1077 (1114)
++++.||.|+.++.
T Consensus 380 ~v~t~~G~l~~~~~ 393 (394)
T PRK11138 380 LIQARDGTVYAITR 393 (394)
T ss_pred EEEeCCceEEEEeC
Confidence 88999999998875
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.74 E-value=7e-06 Score=84.65 Aligned_cols=239 Identities=15% Similarity=0.197 Sum_probs=148.7
Q ss_pred eEEEEcCCCCeEEEEEecCCc-EEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEe-
Q 001248 362 MSMDFHPVQQTLLLVGTNVGD-IGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY- 439 (1114)
Q Consensus 362 ~~v~~spdg~~ll~tg~~dg~-v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~- 439 (1114)
-.++.+|+....++.+-.-|+ ..+||..+++...... .-....|.|| -.||+||++|.+.=
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~-----------a~~gRHFyGH------g~fs~dG~~LytTEn 70 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW-----------APPGRHFYGH------GVFSPDGRLLYTTEN 70 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc-----------CCCCCEEecC------EEEcCCCCEEEEecc
Confidence 467888866656777777664 7899999998876311 2222356677 68999999999863
Q ss_pred ----CCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecC----------------CCCEEEEeCCCC
Q 001248 440 ----SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD----------------DKTIKVWDATNG 499 (1114)
Q Consensus 440 ----~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~----------------d~~i~iwd~~~~ 499 (1114)
..|.|-|||... .+....++..|.-.-..+.+.|||+.|+++-|+- +.++.+-|..+|
T Consensus 71 d~~~g~G~IgVyd~~~--~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG 148 (305)
T PF07433_consen 71 DYETGRGVIGVYDAAR--GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG 148 (305)
T ss_pred ccCCCcEEEEEEECcC--CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC
Confidence 358899999993 2444557777777778899999998655555542 345666777888
Q ss_pred cceeE--e--eccccCEEEEeeccCCCceEEEEEecCCe-------EEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeE
Q 001248 500 AKQYI--F--EGHEAPVYSVCPHHKENIQFIFSTALDGK-------IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRT 568 (1114)
Q Consensus 500 ~~~~~--~--~~h~~~v~~~~~~~~~~~~~l~s~~~d~~-------i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~ 568 (1114)
+.+.. + .-|...|.-+++.. +|..++..-..|. +-+++.. +. ...+...++..
T Consensus 149 ~ll~q~~Lp~~~~~lSiRHLa~~~--~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~----------~~~~~~p~~~~-- 212 (305)
T PF07433_consen 149 ALLEQVELPPDLHQLSIRHLAVDG--DGTVAFAMQYQGDPGDAPPLVALHRRG--GA----------LRLLPAPEEQW-- 212 (305)
T ss_pred ceeeeeecCccccccceeeEEecC--CCcEEEEEecCCCCCccCCeEEEEcCC--Cc----------ceeccCChHHH--
Confidence 87765 4 34777888888654 3333333322221 1111111 11 11111111000
Q ss_pred EeeecccceeEEEecCCCCEEEEEe-CCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEE
Q 001248 569 YQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIK 643 (1114)
Q Consensus 569 ~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~ 643 (1114)
..-.+-+..++++.++.++++.+ ..+.+.+||..+++.+...... .+..++..+++ ++++.+ .|.+.
T Consensus 213 --~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~----D~cGva~~~~~-f~~ssG-~G~~~ 280 (305)
T PF07433_consen 213 --RRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP----DACGVAPTDDG-FLVSSG-QGQLI 280 (305)
T ss_pred --HhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC----ceeeeeecCCc-eEEeCC-CccEE
Confidence 01122455667777776675555 7889999999999998877644 35667777766 444433 35543
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.5e-08 Score=102.35 Aligned_cols=274 Identities=13% Similarity=0.136 Sum_probs=169.4
Q ss_pred cCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCC
Q 001248 711 LADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGK 790 (1114)
Q Consensus 711 ~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 790 (1114)
..+.+.+++++.|.++++|.+...........-.+.-..|...|.++.|-.+-+.+++ .||.|.+||.
T Consensus 744 idNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHlWDP---------- 811 (1034)
T KOG4190|consen 744 IDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHLWDP---------- 811 (1034)
T ss_pred cccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcceeecc----------
Confidence 3466788999999999999998644433322222333558999999999988876654 4666777653
Q ss_pred ccccccccccCCCCCccccccCCCCCCCCCccEEEEee--CCCEEEEE-e-CCeEEEEEcCCCccccccC-----CCCCC
Q 001248 791 ATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK--NDSYVMSA-S-GGKISLFNMMTFKTMATFM-----PPPPA 861 (1114)
Q Consensus 791 ~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~--d~~~l~~~-~-dg~i~iwd~~~~~~~~~~~-----~~~~~ 861 (1114)
-.|+++....... ..+.+..+..-+ +...+..+ + ..+|+++|...++....++ +....
T Consensus 812 ------------Figr~Laq~~dap-k~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~ 878 (1034)
T KOG4190|consen 812 ------------FIGRLLAQMEDAP-KEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNAL 878 (1034)
T ss_pred ------------cccchhHhhhcCc-ccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchh
Confidence 3344333211111 122233333323 34445555 3 6899999999887665553 34466
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEE-EeCCCCcccccc
Q 001248 862 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCV-WSSDGWEKQKNR 940 (1114)
Q Consensus 862 i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~i-wd~~~~~~~~~~ 940 (1114)
++++++.+ .|+.+|.|-.+|.|.+.|..+|+.+..++........++- |..+.|+....|.++.+ |....+......
T Consensus 879 ~R~iaVa~-~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldgimh~q~ 956 (1034)
T KOG4190|consen 879 TRAIAVAD-KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDGIMHLQD 956 (1034)
T ss_pred eeEEEecc-CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCCeeeecc
Confidence 89999999 8999999999999999999999999988877666655554 55678888888999988 876654321110
Q ss_pred ccccCCCCCCCCCCceEEEEccCCcEEEEEeCC-eEEEEEcCC----CceeeeeecCCCCcCeeEEEECCCCCEEEEEEc
Q 001248 941 FLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET-QLAIFETTK----LECVKQWVPRESSAPITHATFSCDSQLVYACFL 1015 (1114)
Q Consensus 941 ~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~-~i~iwd~~~----~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~ 1015 (1114)
.-.....|.. -.-|--|+++..| .+.+|--.. ...+..+..+...+..++++.-|=..-++.|+.
T Consensus 957 kpppepahfl----------qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne 1026 (1034)
T KOG4190|consen 957 KPPPEPAHFL----------QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNE 1026 (1034)
T ss_pred CCCCcchhhh----------hccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCC
Confidence 0000001110 1113334443222 344443111 111222233334667888888886666667888
Q ss_pred CCeEEE
Q 001248 1016 DATVCV 1021 (1114)
Q Consensus 1016 Dg~I~v 1021 (1114)
.|.|.+
T Consensus 1027 ~G~IaL 1032 (1034)
T KOG4190|consen 1027 HGAIAL 1032 (1034)
T ss_pred CCceee
Confidence 888875
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.5e-06 Score=94.12 Aligned_cols=209 Identities=8% Similarity=0.052 Sum_probs=127.9
Q ss_pred eEEEEEcCCCccccccCCCCCCeEEEEEecCCCc-EEEEEeC---CCcEEEEEcccceEEEeecccccCeeEEEEcCCCC
Q 001248 840 KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN-IIAIGMD---DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN 915 (1114)
Q Consensus 840 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~-~la~g~~---dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~ 915 (1114)
.|.+-|..... .+.+.... .+....|+| ||+ .++..+. +..|+++|+.+++..... ...+......|||||+
T Consensus 170 ~l~~~d~dg~~-~~~~~~~~-~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 170 NIVLADYTLTY-QKVIVKGG-LNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGS 245 (419)
T ss_pred eEEEECCCCCc-eeEEccCC-CeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCC
Confidence 45555554333 33233233 678899999 776 3665433 357999999888654433 3455566788999998
Q ss_pred EEEE-EeCC--CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCC----eEEEEEcCCCceeee
Q 001248 916 VLVS-SGAD--SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET----QLAIFETTKLECVKQ 988 (1114)
Q Consensus 916 ~l~s-~s~D--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~----~i~iwd~~~~~~~~~ 988 (1114)
.|+. .+.+ ..|.++++.+++... +....+ ......|+|||+.|+...+. .|.+.|+.+++..+.
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~~---LT~~~~------~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl 316 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLTQ---ITNYPG------IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV 316 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEEE---cccCCC------ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC
Confidence 7764 3334 457777887754321 111111 12445899999998885443 788999988876544
Q ss_pred eecCCCCcCeeEEEECCCCCEEEEEEcC---------CeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCC
Q 001248 989 WVPRESSAPITHATFSCDSQLVYACFLD---------ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1059 (1114)
Q Consensus 989 ~~~~~h~~~v~~l~~s~dg~~l~s~s~D---------g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d 1059 (1114)
... +. ....|||||++|+..+.. ..|++.|+.++... .+... + . .. ...|+| |
T Consensus 317 t~~-g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-----~---~-~~--~p~~SP-D 378 (419)
T PRK04043 317 VFH-GK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-----G---V-NQ--FPRFSS-D 378 (419)
T ss_pred ccC-CC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-----C---C-cC--CeEECC-C
Confidence 321 21 124899999998876654 36888899888753 33311 1 1 11 478999 6
Q ss_pred CCeEEEEeCC-Cc--EEEEeccC
Q 001248 1060 PNEFALGLSD-GG--VHVFEPLE 1079 (1114)
Q Consensus 1060 ~~~l~s~~~D-g~--v~vW~i~~ 1079 (1114)
|+.|+....+ +. +.+.++..
T Consensus 379 G~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 379 GGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CCEEEEEEccCCcEEEEEEecCC
Confidence 7766654433 33 45555543
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.2e-05 Score=84.91 Aligned_cols=220 Identities=14% Similarity=0.071 Sum_probs=139.2
Q ss_pred cEEEEee-CCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeec
Q 001248 822 PCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK 899 (1114)
Q Consensus 822 ~~v~~s~-d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~ 899 (1114)
.+++|.+ ++.++++-. .+.|..|+..++.... +.... ...+++...++.++++ .. +.+.++|..+++......
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~-~~-~~~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVA-DS-GGIAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEE-ET-TCEEEEETTTTEEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEE-Ec-CceEEEecCCCcEEEEee
Confidence 3578887 555555554 7899999998765533 22112 7788888326665554 44 455666998885443332
Q ss_pred c-----cccCeeEEEEcCCCCEEEEEeCC--------CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcE
Q 001248 900 G-----HSKRITGLAFSHALNVLVSSGAD--------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 966 (1114)
Q Consensus 900 ~-----h~~~V~~l~~s~d~~~l~s~s~D--------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~ 966 (1114)
. .....+.+++.++|++.++.... |.|..++.. ++.. ...... .....++|+||++.
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~--~~~~~~-------~~pNGi~~s~dg~~ 147 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVT--VVADGL-------GFPNGIAFSPDGKT 147 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEE--EEEEEE-------SSEEEEEEETTSSE
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEE--EEecCc-------ccccceEECCcchh
Confidence 2 34568899999999988876654 446666666 2221 111111 24589999999998
Q ss_pred EEE--EeCCeEEEEEcCCCce----eeee-ecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCccc
Q 001248 967 FLV--VHETQLAIFETTKLEC----VKQW-VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYL 1039 (1114)
Q Consensus 967 l~~--~~d~~i~iwd~~~~~~----~~~~-~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~ 1039 (1114)
|.+ +..+.|..|++..... .+.+ ....-.+..-.+++..+|.+.++....+.|.+++-+ |+++..+. +
T Consensus 148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~----~ 222 (246)
T PF08450_consen 148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIE----L 222 (246)
T ss_dssp EEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-----
T ss_pred eeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEc----C
Confidence 876 3677899888863322 1222 111212347889999999988888889999999977 99998887 4
Q ss_pred CCCCCCCCccceEEEecCCCCCeEEEEe
Q 001248 1040 PAGVSSSNVHPLVIAAHPQEPNEFALGL 1067 (1114)
Q Consensus 1040 ~~~~~~~~v~~~~~~~~~~d~~~l~s~~ 1067 (1114)
| . -.+++++|...|.+.|++.+
T Consensus 223 p-~-----~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 223 P-V-----PRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp S-S-----SSEEEEEEESTTSSEEEEEE
T ss_pred C-C-----CCEEEEEEECCCCCEEEEEe
Confidence 4 1 23568999644556555443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.1e-06 Score=82.34 Aligned_cols=242 Identities=13% Similarity=0.085 Sum_probs=152.2
Q ss_pred CEEEEEe-CCeEEEEEcCCCccc-cccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEE
Q 001248 831 SYVMSAS-GGKISLFNMMTFKTM-ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL 908 (1114)
Q Consensus 831 ~~l~~~~-dg~i~iwd~~~~~~~-~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l 908 (1114)
-+||.|+ .|...+|...+.+.. .....+...|+-+.=.-+...-+..++.|.++++.++.-+.....+.-..-.++++
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~ 164 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSL 164 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeee
Confidence 4777776 799999998865433 22333444333221111122345667888888888887654332222122238899
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCCCceee
Q 001248 909 AFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVK 987 (1114)
Q Consensus 909 ~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~~~~~~ 987 (1114)
++++|++++++.+....|..|.++........ +.. .+....-.+..|+.....+|+ ..||.+.|||++......
T Consensus 165 ~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~---~~~--a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm 239 (344)
T KOG4532|consen 165 HYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN---IYE--APTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPM 239 (344)
T ss_pred EEcCCCceEEEecCCCcceEEEeCCccceeee---eEe--cccCCCceeeeeccCcceEEEEecCCcEEEEEecccccch
Confidence 99999999999999999999999863321111 111 111234478899999888888 599999999998765433
Q ss_pred eee---cCCCCcCeeEEEECCCCCE--EEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCe
Q 001248 988 QWV---PRESSAPITHATFSCDSQL--VYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNE 1062 (1114)
Q Consensus 988 ~~~---~~~h~~~v~~l~~s~dg~~--l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~ 1062 (1114)
... .+.|.+.+..+.|++.|.. |+..-.-+.+.|-|+.+++....+.+....-..|...-+. ...|.. ++.-
T Consensus 240 ~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~if--gt~f~~-~n~s 316 (344)
T KOG4532|consen 240 AEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIF--GTNFNN-ENES 316 (344)
T ss_pred hhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccc--cccccC-CCcc
Confidence 222 2458999999999987753 4444455789999999998877766443332222223233 455655 3444
Q ss_pred EEEEeCCCcEEEEeccCCC
Q 001248 1063 FALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1063 l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
+.+..+ -.+.-|++....
T Consensus 317 ~~v~~e-~~~ae~ni~srs 334 (344)
T KOG4532|consen 317 NDVKNE-LQGAEYNILSRS 334 (344)
T ss_pred cccccc-hhhheeeccccc
Confidence 444433 345667765543
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.65 E-value=9.3e-06 Score=83.73 Aligned_cols=186 Identities=12% Similarity=0.154 Sum_probs=127.2
Q ss_pred EEEEeeCCCEEEEEe-C-----CeEEEEEcC-CCccccccCCCCCCeEEEEEecCCCcEEEEEe----------------
Q 001248 823 CFALSKNDSYVMSAS-G-----GKISLFNMM-TFKTMATFMPPPPAATFLAFHPQDNNIIAIGM---------------- 879 (1114)
Q Consensus 823 ~v~~s~d~~~l~~~~-d-----g~i~iwd~~-~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~---------------- 879 (1114)
.-+||+||++|.+.- | |.|-|||.. +.+.+.++..+.-....+.+.| |++.|+++.
T Consensus 55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl 133 (305)
T PF07433_consen 55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNL 133 (305)
T ss_pred CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecCh
Confidence 368999999999884 2 779999998 6777788887777777888999 886666653
Q ss_pred --CCCcEEEEEcccceEEEe--e--cccccCeeEEEEcCCCCEEEEEeCCC-------cEEEEeCCCCccccccccccCC
Q 001248 880 --DDSSIQIYNVRVDEVKSK--L--KGHSKRITGLAFSHALNVLVSSGADS-------QLCVWSSDGWEKQKNRFLQIPT 946 (1114)
Q Consensus 880 --~dg~v~iwd~~~~~~~~~--l--~~h~~~V~~l~~s~d~~~l~s~s~D~-------~v~iwd~~~~~~~~~~~~~~~~ 946 (1114)
.+-++-..|..+|+++.+ + ..|..+|..+++.++|..++..-..| -|-+++-.. .. ..+....
T Consensus 134 ~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~--~~~~~p~ 209 (305)
T PF07433_consen 134 DTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--AL--RLLPAPE 209 (305)
T ss_pred hhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cc--eeccCCh
Confidence 223456667788988876 4 34888999999999987666543332 133333322 10 0111110
Q ss_pred CC-CCCCCCceEEEEccCCcEEEEE--eCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeE
Q 001248 947 GR-TPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1019 (1114)
Q Consensus 947 ~~-~~~~~~i~~v~fspdg~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I 1019 (1114)
.. ....+.+-+|+++++|.+++++ ..+.+.+||..++..+.... -..+..++-.+++ ++++.+ .|.+
T Consensus 210 ~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~----l~D~cGva~~~~~-f~~ssG-~G~~ 279 (305)
T PF07433_consen 210 EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP----LPDACGVAPTDDG-FLVSSG-QGQL 279 (305)
T ss_pred HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc----cCceeeeeecCCc-eEEeCC-CccE
Confidence 00 0112467899999999998874 66789999999999988765 3456777777777 666554 4443
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=9.1e-05 Score=72.15 Aligned_cols=146 Identities=10% Similarity=0.038 Sum_probs=96.9
Q ss_pred EEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeec
Q 001248 471 IAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE 550 (1114)
Q Consensus 471 v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 550 (1114)
+...+|.+. +++.|+..+.+.--|..+|+.+..-. -...|.+-+.. -|++++.|+..|.+.+.+..++++...+.
T Consensus 16 LVV~~dskT-~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v---vgdfVV~GCy~g~lYfl~~~tGs~~w~f~ 90 (354)
T KOG4649|consen 16 LVVCNDSKT-LVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV---VGDFVVLGCYSGGLYFLCVKTGSQIWNFV 90 (354)
T ss_pred EEEecCCce-EEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE---ECCEEEEEEccCcEEEEEecchhheeeee
Confidence 445566665 78889999999999999998775422 22334333322 12589999999999999999887766543
Q ss_pred CCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcC-C
Q 001248 551 APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-D 629 (1114)
Q Consensus 551 ~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-d 629 (1114)
..+.--. ....++++..+.+++.|+..+..|..+..++...+..+. ...+-++.+ +
T Consensus 91 ~~~~vk~---------------------~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~--~f~sP~i~~g~ 147 (354)
T KOG4649|consen 91 ILETVKV---------------------RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGG--TFVSPVIAPGD 147 (354)
T ss_pred ehhhhcc---------------------ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCc--eeccceecCCC
Confidence 3221101 123455666899999999999999999999998876654 234455566 4
Q ss_pred CCEEEEEeCCCcEEEE
Q 001248 630 GCLLAVSTNDNGIKIL 645 (1114)
Q Consensus 630 ~~~l~~~~~dg~i~iw 645 (1114)
+. |+.+...|.+.--
T Consensus 148 ~s-ly~a~t~G~vlav 162 (354)
T KOG4649|consen 148 GS-LYAAITAGAVLAV 162 (354)
T ss_pred ce-EEEEeccceEEEE
Confidence 44 4444444554433
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.6e-07 Score=103.17 Aligned_cols=257 Identities=12% Similarity=0.165 Sum_probs=164.3
Q ss_pred CceEEEEcCCC--CeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC-CCCeEE
Q 001248 360 SPMSMDFHPVQ--QTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFG 436 (1114)
Q Consensus 360 ~v~~v~~spdg--~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~la 436 (1114)
.|-.+.|||.- .+ -++......-.+|++....... ..-++.||+..|+.+.|.| .-..||
T Consensus 69 ~vad~qws~h~a~~~-wiVsts~qkaiiwnlA~ss~~a----------------Ief~lhghsraitd~n~~~q~pdVla 131 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPY-WIVSTSNQKAIIWNLAKSSSNA----------------IEFVLHGHSRAITDINFNPQHPDVLA 131 (1081)
T ss_pred hhcceecccCCCCce-eEEecCcchhhhhhhhcCCccc----------------eEEEEecCccceeccccCCCCCccee
Confidence 35566777643 22 3333445556688876433222 1125789999999999999 456789
Q ss_pred EEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCC-cceeEeeccccCEEEE
Q 001248 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPVYSV 515 (1114)
Q Consensus 437 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~ 515 (1114)
+++.|..+..||+.+..... .....-...-..|+|+.... .+...+..+.|.+||.+.| .++..+++|...|..+
T Consensus 132 tcsvdt~vh~wd~rSp~~p~--ys~~~w~s~asqVkwnyk~p--~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~ 207 (1081)
T KOG0309|consen 132 TCSVDTYVHAWDMRSPHRPF--YSTSSWRSAASQVKWNYKDP--NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSI 207 (1081)
T ss_pred eccccccceeeeccCCCcce--eeeecccccCceeeecccCc--chhhhccCCceEEEeccCCCcceEEecccceeeehH
Confidence 99999999999998765322 23333344567899998776 3566677788999999865 5678899999999999
Q ss_pred eeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecC-CCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeC
Q 001248 516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA-PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 594 (1114)
Q Consensus 516 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 594 (1114)
.|..... ..+.+.+.|++|++||.+.......... ...++..-.+.|-|...+ +-+.-.++.+..-.-
T Consensus 208 ~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~----------~mp~~G~n~v~~~~c 276 (1081)
T KOG0309|consen 208 DFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYC----------IMPMVGGNMVPQLRC 276 (1081)
T ss_pred HHhhhhh-hhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeE----------eccccCCeeeeeccc
Confidence 8764433 4688999999999999987554433222 233455555555554111 111111122222222
Q ss_pred CCeEEEEECCC-cceEEEeccCCCCCCcCeEEEcC----------CCCEEEEEeCCCcEEEEEccCC
Q 001248 595 DFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNK----------DGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 595 dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~----------d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
++....|+..+ .+.+.++.+|.. .|...-|-. ..-.|++=+.|.++++|-+.+.
T Consensus 277 ~n~d~e~n~~~~~~pVh~F~GH~D--~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 277 ENSDLEWNVFDLNTPVHTFVGHDD--VVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred cchhhhhccccCCcceeeecCcch--HHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 34444565443 357788876643 444333322 1237899999999999988653
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=8.4e-06 Score=91.39 Aligned_cols=113 Identities=19% Similarity=0.343 Sum_probs=84.2
Q ss_pred EEEEcCCCCeEEEEe----CCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCc
Q 001248 425 RVIWSPDGSLFGVAY----SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA 500 (1114)
Q Consensus 425 ~l~~spdg~~las~~----~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 500 (1114)
-..|+|...++|+++ ..|+|-||- ++|+.-+ ..+..-| +.+++|.|..- +|+.|-.-|.+.+|...+.+
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr-~Vt~P~h---atSLCWHpe~~--vLa~gwe~g~~~v~~~~~~e 92 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQR-DVTYPVH---ATSLCWHPEEF--VLAQGWEMGVSDVQKTNTTE 92 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCc-cccccee---hhhhccChHHH--HHhhccccceeEEEecCCce
Confidence 356888888888875 357788884 4555322 1122223 56799999766 78888889999999977776
Q ss_pred ceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCe
Q 001248 501 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR 546 (1114)
Q Consensus 501 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 546 (1114)
.-.....|..+|..+.|++ +|..++++..-|.+.+|.++..+..
T Consensus 93 ~htv~~th~a~i~~l~wS~--~G~~l~t~d~~g~v~lwr~d~~g~~ 136 (1416)
T KOG3617|consen 93 THTVVETHPAPIQGLDWSH--DGTVLMTLDNPGSVHLWRYDVIGEI 136 (1416)
T ss_pred eeeeccCCCCCceeEEecC--CCCeEEEcCCCceeEEEEeeecccc
Confidence 6666677999999999865 5579999999999999988754443
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.60 E-value=9.5e-07 Score=87.35 Aligned_cols=226 Identities=16% Similarity=0.222 Sum_probs=140.1
Q ss_pred CCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCc--eeeeeEeecccc------------CCeeEEEecCCCCeeEEEE
Q 001248 419 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD--EVRQHLEIDAHV------------GGVNDIAFSHPNKQLCVIT 484 (1114)
Q Consensus 419 h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~--~~~~~~~l~~h~------------~~V~~v~~s~d~~~~~l~s 484 (1114)
..+.|+++.|...|.||++|...|.|.+|.-.... ..+...++++|. ..|..+.|..++..-.++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 44679999999999999999999999999765432 122223455664 3588999988766546777
Q ss_pred ecCCCCEEEEeCCCCc-------------------cee--------E---------------e-eccccCEEEEeeccCC
Q 001248 485 CGDDKTIKVWDATNGA-------------------KQY--------I---------------F-EGHEAPVYSVCPHHKE 521 (1114)
Q Consensus 485 ~~~d~~i~iwd~~~~~-------------------~~~--------~---------------~-~~h~~~v~~~~~~~~~ 521 (1114)
.+.|++|++|.+.... .+. . . ..|.-.|.++.+..+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 7889999999875331 000 0 1 2455556667654332
Q ss_pred CceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCC-CEEEEEeCCCeEEE
Q 001248 522 NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK-NRFLAAGDDFSIKF 600 (1114)
Q Consensus 522 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i 600 (1114)
..+++ +.|=.|.+|+++-....+.+ +.+-|..-. .-...++...|+|.. +.+.-.+..|.|++
T Consensus 185 --et~lS-aDdLrINLWnl~i~D~sFnI---------VDiKP~nme----eLteVItSaeFhp~~cn~fmYSsSkG~Ikl 248 (460)
T COG5170 185 --ETLLS-ADDLRINLWNLEIIDGSFNI---------VDIKPHNME----ELTEVITSAEFHPEMCNVFMYSSSKGEIKL 248 (460)
T ss_pred --heeee-ccceeeeeccccccCCceEE---------EeccCccHH----HHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence 44444 45778999988754332211 111111100 000123334455543 34555778999999
Q ss_pred EECCCcce------EEE--eccC------CCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccc
Q 001248 601 WDMDSVQL------LTS--IDAD------GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA 661 (1114)
Q Consensus 601 wd~~~~~~------~~~--~~~~------~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 661 (1114)
-|++.... +.. +.+. +-...|..+.|+++|+++++-+. -+++|||++..+.+++++.-|.
T Consensus 249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~ 322 (460)
T COG5170 249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHC 322 (460)
T ss_pred hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHH
Confidence 99874321 111 1110 11245778999999999987665 6899999988877777665443
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.8e-06 Score=88.59 Aligned_cols=213 Identities=12% Similarity=0.065 Sum_probs=142.4
Q ss_pred CCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecC-CCCEEEEeC
Q 001248 418 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDA 496 (1114)
Q Consensus 418 ~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~-d~~i~iwd~ 496 (1114)
-|.+.|+.+.-+ -.+++.+++.||.++.|.-..-..+.-...+..|.+.|.+++.+.++. ++.|.+. |..++++|+
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~--L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW--LFRSVEDPDHSVKVFDV 83 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce--eEeeccCcccceeEEEe
Confidence 377778777655 567999999999999998665333433445778999999999999998 7888777 999999999
Q ss_pred CCCcceeEeec--cccCEEEEeeccCCC-c--eEEEEEecCCeEEEEEcCCCCCee--eecCCCCeeEEEEEecCCCeEE
Q 001248 497 TNGAKQYIFEG--HEAPVYSVCPHHKEN-I--QFIFSTALDGKIKAWLYDNLGSRV--DYEAPGRWCTTMAYSADGTRTY 569 (1114)
Q Consensus 497 ~~~~~~~~~~~--h~~~v~~~~~~~~~~-~--~~l~s~~~d~~i~~wd~~~~~~~~--~~~~~~~~v~~~~~s~~g~~~~ 569 (1114)
++-..+..++- -.+.+ +|..++. - .+.++.-.++.+.++|-....+.. .-..|..+|..
T Consensus 84 En~DminmiKL~~lPg~a---~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~----------- 149 (558)
T KOG0882|consen 84 ENFDMINMIKLVDLPGFA---EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKK----------- 149 (558)
T ss_pred eccchhhhcccccCCCce---EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEE-----------
Confidence 87655533321 11222 2222221 1 233344457889999876544332 22234444444
Q ss_pred eeecccceeEEEecCCCCEEEEEeCCCeEEEEECCC------cceEEEec-------cCCCCCCcCeEEEcCCCCEEEEE
Q 001248 570 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS------VQLLTSID-------ADGGLPASPRIRFNKDGCLLAVS 636 (1114)
Q Consensus 570 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~-------~~~~~~~v~~~~~s~d~~~l~~~ 636 (1114)
+.+.+.+..+++....|.|.-|.... .+....++ .........++.|+|+|..+.+-
T Consensus 150 ----------i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl 219 (558)
T KOG0882|consen 150 ----------IRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTL 219 (558)
T ss_pred ----------EEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCccccc
Confidence 44455555688888899999998762 11111111 11223456899999999999999
Q ss_pred eCCCcEEEEEccCCccceeecc
Q 001248 637 TNDNGIKILATSDGIRLLRTFE 658 (1114)
Q Consensus 637 ~~dg~i~iwd~~~~~~~~~~~~ 658 (1114)
..|..|++++..++ ...+.+.
T Consensus 220 ~~DrkVR~F~~KtG-klvqeiD 240 (558)
T KOG0882|consen 220 NPDRKVRGFVFKTG-KLVQEID 240 (558)
T ss_pred CcccEEEEEEeccc-hhhhhhh
Confidence 99999999999998 5555553
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00019 Score=75.72 Aligned_cols=228 Identities=19% Similarity=0.193 Sum_probs=140.5
Q ss_pred eEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEc-CCCCeEEEEeC
Q 001248 362 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS-PDGSLFGVAYS 440 (1114)
Q Consensus 362 ~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s-pdg~~las~~~ 440 (1114)
-++.|.+....|+++--..+.|..|+..+++.... ... ....+++. ++|++++ +..
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~--------------------~~~--~~~G~~~~~~~g~l~v-~~~ 59 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI--------------------DLP--GPNGMAFDRPDGRLYV-ADS 59 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE--------------------ESS--SEEEEEEECTTSEEEE-EET
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE--------------------ecC--CCceEEEEccCCEEEE-EEc
Confidence 36789984444788877889999999998866431 111 26677777 6755555 445
Q ss_pred CCeEEEEEccCCceeeeeEeec--c-ccCCeeEEEecCCCCeeEEEEecCC--------CCEEEEeCCCCcceeEeeccc
Q 001248 441 RHIVQIYSYHGGDEVRQHLEID--A-HVGGVNDIAFSHPNKQLCVITCGDD--------KTIKVWDATNGAKQYIFEGHE 509 (1114)
Q Consensus 441 dg~i~iwd~~~~~~~~~~~~l~--~-h~~~V~~v~~s~d~~~~~l~s~~~d--------~~i~iwd~~~~~~~~~~~~h~ 509 (1114)
++ +.++|..+++.. ...... . .....+.+++.++|+ +.++.... +.|..++.. ++... +...-
T Consensus 60 ~~-~~~~d~~~g~~~-~~~~~~~~~~~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~-~~~~~ 133 (246)
T PF08450_consen 60 GG-IAVVDPDTGKVT-VLADLPDGGVPFNRPNDVAVDPDGN--LYVTDSGGGGASGIDPGSVYRIDPD-GKVTV-VADGL 133 (246)
T ss_dssp TC-EEEEETTTTEEE-EEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT-SEEEE-EEEEE
T ss_pred Cc-eEEEecCCCcEE-EEeeccCCCcccCCCceEEEcCCCC--EEEEecCCCccccccccceEEECCC-CeEEE-EecCc
Confidence 44 566699887543 333332 2 345688999999999 55654433 457777766 45333 33345
Q ss_pred cCEEEEeeccCCCceEE-EEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCE
Q 001248 510 APVYSVCPHHKENIQFI-FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 588 (1114)
Q Consensus 510 ~~v~~~~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~ 588 (1114)
...+.++|+++ ++.| ++-+..+.|..+++........- ..+.....+. .+...-++++.+|+.
T Consensus 134 ~~pNGi~~s~d--g~~lyv~ds~~~~i~~~~~~~~~~~~~~-------~~~~~~~~~~-------~g~pDG~~vD~~G~l 197 (246)
T PF08450_consen 134 GFPNGIAFSPD--GKTLYVADSFNGRIWRFDLDADGGELSN-------RRVFIDFPGG-------PGYPDGLAVDSDGNL 197 (246)
T ss_dssp SSEEEEEEETT--SSEEEEEETTTTEEEEEEEETTTCCEEE-------EEEEEE-SSS-------SCEEEEEEEBTTS-E
T ss_pred ccccceEECCc--chheeecccccceeEEEeccccccceee-------eeeEEEcCCC-------CcCCCcceEcCCCCE
Confidence 66788898654 4555 56677888988888654331100 0000000000 012334666677777
Q ss_pred EEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEc-CCCCEEEEEe
Q 001248 589 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVST 637 (1114)
Q Consensus 589 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~~~~ 637 (1114)
.++....+.|.+++.+ |+.+..+.... ..+++++|. ++.+.|++.+
T Consensus 198 ~va~~~~~~I~~~~p~-G~~~~~i~~p~--~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 198 WVADWGGGRIVVFDPD-GKLLREIELPV--PRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEETTTEEEEEETT-SCEEEEEE-SS--SSEEEEEEESTTSSEEEEEE
T ss_pred EEEEcCCCEEEEECCC-ccEEEEEcCCC--CCEEEEEEECCCCCEEEEEe
Confidence 7877789999999987 88888887662 368899994 6766666544
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.0049 Score=71.97 Aligned_cols=314 Identities=10% Similarity=0.084 Sum_probs=165.9
Q ss_pred CcccccccCCCceeEEEeccCC--CCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCc
Q 001248 714 VKPRITEESNDKSKVWKLTELS--EPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKA 791 (1114)
Q Consensus 714 ~~~l~~~~~d~~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 791 (1114)
..+|.++..||.+.-|.+.... .....+. .-...++.--.|+..++.-+.+..|.-..+|.-+
T Consensus 595 ~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~-----~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n---------- 659 (1096)
T KOG1897|consen 595 IHYLLVALGDGALLYFVLDINTGQLSDRKKV-----TLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN---------- 659 (1096)
T ss_pred ceEEEEEcCCceEEEEEEEcccceEcccccc-----ccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC----------
Confidence 6788999999998777655422 1111100 1134455555666655555555555444444321
Q ss_pred cccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCcc--ccccCCCCCCeEEEEEec
Q 001248 792 TASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKT--MATFMPPPPAATFLAFHP 869 (1114)
Q Consensus 792 ~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~sp 869 (1114)
+.+....+.- ..-..+..+.-+.-...++++..+.+++.-+..-+. ++++.- ......+++.+
T Consensus 660 -------------~kLv~spls~-kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl-~~~prrI~~q~ 724 (1096)
T KOG1897|consen 660 -------------GKLVYSPLSL-KEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPL-GESPRRICYQE 724 (1096)
T ss_pred -------------CcEEEeccch-HHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeecC-CCChhheEecc
Confidence 1111000000 000011111111223456777777777776654222 233322 23345566655
Q ss_pred CCCcEEEEEeCC--------------CcEEEEEcccceEEEeecc--c--ccCeeEEEEcCC-CCEEEEEeC--------
Q 001248 870 QDNNIIAIGMDD--------------SSIQIYNVRVDEVKSKLKG--H--SKRITGLAFSHA-LNVLVSSGA-------- 922 (1114)
Q Consensus 870 ~d~~~la~g~~d--------------g~v~iwd~~~~~~~~~l~~--h--~~~V~~l~~s~d-~~~l~s~s~-------- 922 (1114)
...++++.+.- ..++++|-+|-+.+...+- . .-.|.++.|..| +.++++|..
T Consensus 725 -~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~e 803 (1096)
T KOG1897|consen 725 -SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENE 803 (1096)
T ss_pred -cceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCC
Confidence 33333333211 1467777776655433221 1 123555568887 777887753
Q ss_pred --CCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCCceeeeeecCCCCcCeeE
Q 001248 923 --DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITH 1000 (1114)
Q Consensus 923 --D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~ 1000 (1114)
.|.|.|+.+......+........ +.+. +.-.-...++++-...|++|+..+.+.++.-. .|..++..
T Consensus 804 p~~GRIivfe~~e~~~L~~v~e~~v~------Gav~--aL~~fngkllA~In~~vrLye~t~~~eLr~e~--~~~~~~~a 873 (1096)
T KOG1897|consen 804 PVNGRIIVFEFEELNSLELVAETVVK------GAVY--ALVEFNGKLLAGINQSVRLYEWTTERELRIEC--NISNPIIA 873 (1096)
T ss_pred cccceEEEEEEecCCceeeeeeeeec------ccee--ehhhhCCeEEEecCcEEEEEEccccceehhhh--cccCCeEE
Confidence 366777777662221111111111 1122 22222334455667889999999886655533 56788999
Q ss_pred EEECCCCCEEEEEEcCCeEEEEEcCCCe--eeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEecc
Q 001248 1001 ATFSCDSQLVYACFLDATVCVFSAANLK--LRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1078 (1114)
Q Consensus 1001 l~~s~dg~~l~s~s~Dg~I~vwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~ 1078 (1114)
+...-.|..+++|..=++|.+......+ +.-.-+ .+.| -+.+++.+. |++..+-+..+|.+++-...
T Consensus 874 L~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evAr--D~~p-------~Wmtaveil--~~d~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 874 LDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVAR--DYNP-------NWMTAVEIL--DDDTYLGAENSGNLFTVRKD 942 (1096)
T ss_pred EEEEecCcEEEEeeccceEEEEEEeccCCceEEeeh--hhCc-------cceeeEEEe--cCceEEeecccccEEEEEec
Confidence 9999999999999888887776554433 443322 2222 223356655 35667777889999998775
Q ss_pred C
Q 001248 1079 E 1079 (1114)
Q Consensus 1079 ~ 1079 (1114)
+
T Consensus 943 ~ 943 (1096)
T KOG1897|consen 943 S 943 (1096)
T ss_pred C
Confidence 4
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.50 E-value=8.4e-05 Score=77.72 Aligned_cols=205 Identities=17% Similarity=0.189 Sum_probs=127.5
Q ss_pred EEEEeeCCCEEEEEe---CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcc-cceEEEe-
Q 001248 823 CFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR-VDEVKSK- 897 (1114)
Q Consensus 823 ~v~~s~d~~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~-~~~~~~~- 897 (1114)
.++++.||+++.+.. .-.|.|-|+...+.+.++.... +..+ -|..++-+.+-+.||.+.-..+. .|+...+
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~i--yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~ 174 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLI--YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKS 174 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEE--EEEETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEE--EecCCCceEEEecCCceEEEEECCCCCEeEee
Confidence 457778888877765 4679999999888877765322 2222 23233456677889999988887 3544322
Q ss_pred ---ecccccCe-eEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCC----CCCCCCCCceEEEEccCCcEEEE
Q 001248 898 ---LKGHSKRI-TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPT----GRTPTAQSDTRVQFHQDQIHFLV 969 (1114)
Q Consensus 898 ---l~~h~~~V-~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~----~~~~~~~~i~~v~fspdg~~l~~ 969 (1114)
|..-.+++ ..-+++..+..++-.+.+|.|+--++............... .....++.-..+++++..+.|.+
T Consensus 175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV 254 (342)
T ss_dssp EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence 22222222 23344555566666888888888887765432222222111 01112245567899887766665
Q ss_pred E----eCC-------eEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCC-EEEEEE-cCCeEEEEEcCCCeeeEEeC
Q 001248 970 V----HET-------QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 970 ~----~d~-------~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~s-~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
- .++ .|.+||+.+++.+..+.. ..++.+|+++.|.+ +|++.+ .++.+.|||..+|+++.++.
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l---~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL---EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE---EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EecCCCCCCccCCceEEEEEECCCCeEEEEEeC---CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 2 222 588999999999999876 34688999999888 555544 57899999999999999887
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.8e-07 Score=90.43 Aligned_cols=164 Identities=13% Similarity=0.085 Sum_probs=122.5
Q ss_pred EEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCCeE
Q 001248 365 DFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIV 444 (1114)
Q Consensus 365 ~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i 444 (1114)
+||-+-.-+-++.+.+-.|-+-|+++|-... +. ..+.|.++.|...+.++..|+.+|.|
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f~-sksDVfAlQf~~s~nLv~~GcRngeI 276 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------FQ-SKSDVFALQFAGSDNLVFNGCRNGEI 276 (425)
T ss_pred hhhhccceeeecccccceeEEEEeecccccc--------------------cc-cchhHHHHHhcccCCeeEecccCCcE
Confidence 6664322122444457788899999886532 22 45689999999999999999999999
Q ss_pred EEEEccCCce--eeeeEeeccccCCeeEEEecC-CCCeeEEEEecCCCCEEEEeCCCCcc---eeEeeccccCEEEEeec
Q 001248 445 QIYSYHGGDE--VRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAK---QYIFEGHEAPVYSVCPH 518 (1114)
Q Consensus 445 ~iwd~~~~~~--~~~~~~l~~h~~~V~~v~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~h~~~v~~~~~~ 518 (1114)
...|+..+.. ..+...+ -|...|+++.... +++ +|++.+.+|+|++||.+.-++ +.++.||...-.-+-++
T Consensus 277 ~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~ 353 (425)
T KOG2695|consen 277 FVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAH 353 (425)
T ss_pred EEEEeeecccCCCcceEEE-EcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeecccccccccccc
Confidence 9999986411 1111122 5899999998887 555 788999999999999987666 88999998766666566
Q ss_pred cCCCceEEEEEecCCeEEEEEcCCCCCeeeecCC
Q 001248 519 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP 552 (1114)
Q Consensus 519 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 552 (1114)
-++....+++++.|...++|.++.+..+.++..+
T Consensus 354 v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 354 VKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred cccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 6666678999999999999999987776655443
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.1e-06 Score=86.94 Aligned_cols=119 Identities=15% Similarity=0.264 Sum_probs=88.9
Q ss_pred CCCCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCcc---ccccCCCC-----CCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 001248 816 NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKT---MATFMPPP-----PAATFLAFHPQDNNIIAIGMDDSSIQIY 887 (1114)
Q Consensus 816 ~~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~---~~~~~~~~-----~~i~~l~~sp~d~~~la~g~~dg~v~iw 887 (1114)
.|...+.++.++.|...++++.|=.|.+|++.-... +..+++|. .-|++..|+|....++...+..|.|++-
T Consensus 170 aH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~ 249 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN 249 (460)
T ss_pred cceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence 478889999999999999999999999999863222 12233333 3478899999778888889999999999
Q ss_pred EcccceEE------E--e--------ecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 001248 888 NVRVDEVK------S--K--------LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE 935 (1114)
Q Consensus 888 d~~~~~~~------~--~--------l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~ 935 (1114)
|++...+. . . +.+-...|..+.|+++|+++++-+. -+|+|||+...+
T Consensus 250 DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k 312 (460)
T COG5170 250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAK 312 (460)
T ss_pred hhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccccc
Confidence 99742211 0 1 1223357888999999999998654 469999987643
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.9e-05 Score=81.70 Aligned_cols=229 Identities=15% Similarity=0.084 Sum_probs=135.8
Q ss_pred CCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeE
Q 001248 380 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 459 (1114)
Q Consensus 380 dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~ 459 (1114)
+|+|..||..+|+.+-+..+. .... ...+. ..+++.++.+++.++.+..||..+|+.+...
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~----------------~~~~-~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~- 62 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLG----------------PGIG-GPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRF- 62 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECS----------------SSCS-SEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEE-
T ss_pred CCEEEEEECCCCCEEEEEECC----------------CCCC-Cccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEe-
Confidence 688999999999887643211 0111 22211 2336777888889999999999999876533
Q ss_pred eeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEe-ecccc---CEEEEeeccCCCceEEEEEecCCeE
Q 001248 460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEA---PVYSVCPHHKENIQFIFSTALDGKI 535 (1114)
Q Consensus 460 ~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~---~v~~~~~~~~~~~~~l~s~~~d~~i 535 (1114)
.+.+ .+...... ++. .++.++.++.|..+|..+|+.+... ..... .......... +..++.+..++.|
T Consensus 63 ~~~~---~~~~~~~~-~~~--~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~l 134 (238)
T PF13360_consen 63 DLPG---PISGAPVV-DGG--RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD--GDRLYVGTSSGKL 134 (238)
T ss_dssp ECSS---CGGSGEEE-ETT--EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE--TTEEEEEETCSEE
T ss_pred eccc---cccceeee-ccc--ccccccceeeeEecccCCcceeeeeccccccccccccccCceEe--cCEEEEEeccCcE
Confidence 2222 21111222 334 3555557789999999999998874 32211 1111111112 4578888889999
Q ss_pred EEEEcCCCCCeeeecCCCCee-EEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEecc
Q 001248 536 KAWLYDNLGSRVDYEAPGRWC-TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA 614 (1114)
Q Consensus 536 ~~wd~~~~~~~~~~~~~~~~v-~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 614 (1114)
..+|.++++.+.......... ..+....+ ....+.+. ++ .++.++.++.+..+|..+++.+....
T Consensus 135 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~-----------~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~w~~~- 200 (238)
T PF13360_consen 135 VALDPKTGKLLWKYPVGEPRGSSPISSFSD-----------INGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKLWSKP- 200 (238)
T ss_dssp EEEETTTTEEEEEEESSTT-SS--EEEETT-----------EEEEEECC-TT-EEEEECCTSSEEEEETTTTEEEEEEC-
T ss_pred EEEecCCCcEEEEeecCCCCCCcceeeecc-----------cccceEEE-CC-EEEEEcCCCeEEEEECCCCCEEEEec-
Confidence 999999988777665533211 00000000 00111111 22 57777777754444999998665433
Q ss_pred CCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccc
Q 001248 615 DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL 653 (1114)
Q Consensus 615 ~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~ 653 (1114)
.. .+.. ....++..|++++.++.+..||..+++..
T Consensus 201 ~~---~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 201 IS---GIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp SS----ECE-CEECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred CC---CccC-CceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence 21 1222 14567788888889999999999999543
|
... |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.9e-06 Score=83.46 Aligned_cols=210 Identities=12% Similarity=0.182 Sum_probs=124.3
Q ss_pred ceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeC
Q 001248 361 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS 440 (1114)
Q Consensus 361 v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~ 440 (1114)
|+.+.|+-+- +|+++..++.+.......+.... .|+-.....++ ..+..|+.+=.+=+.+--+..+++++.
T Consensus 39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~-----~~~rt~~i~~~--~~~a~~sep~p~~~~s~~~t~V~~~~~ 109 (319)
T KOG4714|consen 39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCIS-----LWERDDGIDPF--KVLAKNSEIDPNDACTMTDNRVCIGYA 109 (319)
T ss_pred EEEeechhhh--eeecccchhheeeeccceEEEec-----hhhcccCcCce--eeeeccCCCCCcccccccCCceEecCC
Confidence 6777777665 58888888888777765554332 22211111111 123345444444455556788999999
Q ss_pred CCeEEEEEccCCceeeeeEeec-cccCCeeEEEecCCCCeeEEEEec-----CCCCEEEEeCCCCcceeEeeccccCEEE
Q 001248 441 RHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCG-----DDKTIKVWDATNGAKQYIFEGHEAPVYS 514 (1114)
Q Consensus 441 dg~i~iwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~d~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 514 (1114)
||.+.+++.+.-..+.. ... .|.+. .+......+. .+.+++ .-+..+.|+++..+.+..-..-...|.+
T Consensus 110 dg~~~v~s~~~~~~~~~--~i~~~~~~~-as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~ 184 (319)
T KOG4714|consen 110 DGSLAVFSTDKDLALMS--RIPSIHSGS-ASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA 184 (319)
T ss_pred CceEEEEechHHHhhhh--hcccccccc-cccceeeccc--EEecCCcceEeeccceeeecccccccccccccccccchh
Confidence 99999999876221110 111 12211 1222333344 233332 1234566766543322211112234889
Q ss_pred EeeccCCCceEEEEEecCCeEEEEEcCCCCCee-eecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEe
Q 001248 515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 593 (1114)
Q Consensus 515 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 593 (1114)
+|-+|... +++++|+.||.+-+||++...-.. .+..|...+..+-|.|... ..|++++
T Consensus 185 l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p--------------------~~Lft~s 243 (319)
T KOG4714|consen 185 LCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNP--------------------EHLFTCS 243 (319)
T ss_pred hhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCc--------------------hheeEec
Confidence 99887765 688899999999999999864333 4456666666666666432 4699999
Q ss_pred CCCeEEEEECCC
Q 001248 594 DDFSIKFWDMDS 605 (1114)
Q Consensus 594 ~dg~i~iwd~~~ 605 (1114)
+||.+..||..+
T Consensus 244 edGslw~wdas~ 255 (319)
T KOG4714|consen 244 EDGSLWHWDAST 255 (319)
T ss_pred CCCcEEEEcCCC
Confidence 999999999764
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.45 E-value=5e-07 Score=63.41 Aligned_cols=39 Identities=31% Similarity=0.555 Sum_probs=37.2
Q ss_pred ceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 001248 892 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930 (1114)
Q Consensus 892 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd 930 (1114)
|+++..+.+|.+.|++|+|+|++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467899999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.8e-06 Score=89.96 Aligned_cols=213 Identities=13% Similarity=0.081 Sum_probs=153.9
Q ss_pred CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc---ceEEEeecccccCeeEEEEcCCCCEEEEEeC-CCcEEEEeCCC
Q 001248 858 PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---DEVKSKLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDG 933 (1114)
Q Consensus 858 ~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~---~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-D~~v~iwd~~~ 933 (1114)
|...|+.+..+. .+++.+++-||.++.|.-.. -+.+..+..|-+.|.+++.+-|+.++.|.+. |..++++|+++
T Consensus 8 hrd~i~hv~~tk--a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 8 HRDVITHVFPTK--AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred ccceeeeEeeeh--hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 666777776664 67999999999999998543 2455667889999999999999999999777 99999999998
Q ss_pred CccccccccccCCCCCCCCCCceEEEEccCC--cEEEE--EeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCE
Q 001248 934 WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ--IHFLV--VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL 1009 (1114)
Q Consensus 934 ~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg--~~l~~--~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 1009 (1114)
-.......+..+++ . ..+..++.. ..+++ ..++.+.++|-...-|.......-|..+|..+.+.+-+..
T Consensus 86 ~DminmiKL~~lPg------~-a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds 158 (558)
T KOG0882|consen 86 FDMINMIKLVDLPG------F-AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS 158 (558)
T ss_pred cchhhhcccccCCC------c-eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc
Confidence 55433222222222 1 122222221 14444 3788999999887776655566678999999999999999
Q ss_pred EEEEEcCCeEEEEEcCC------CeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1010 VYACFLDATVCVFSAAN------LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1010 l~s~s~Dg~I~vwd~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
+++....|.|.-|.... +++...++...++-.-. -..-.+.++.|+| ++..+.+-+.|..|++++..+|+
T Consensus 159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~-K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFP-KAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred eeeccccceeEeecCCCcccCccccccccccccchhhccc-ccccCccceEEcc-ccCcccccCcccEEEEEEeccch
Confidence 99998899999999872 32332232222221111 1124466899999 68999999999999999999998
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.42 E-value=5e-06 Score=93.45 Aligned_cols=190 Identities=15% Similarity=0.157 Sum_probs=133.3
Q ss_pred CCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccc
Q 001248 860 PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN 939 (1114)
Q Consensus 860 ~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~ 939 (1114)
..+.|++++ +++|+.|+.+|.|++++.... . .+...|+.. ..+|.+++|||.||+|.|-.+.+.+....
T Consensus 40 D~is~~av~---~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 40 DAISCCAVH---DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hHHHHHHhh---cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 457788885 479999999999999997643 2 444446554 56899999999999999998887543221
Q ss_pred cccccCCCCCCCCCCceEEEEccC-----CcEEEEEeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEE
Q 001248 940 RFLQIPTGRTPTAQSDTRVQFHQD-----QIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF 1014 (1114)
Q Consensus 940 ~~~~~~~~~~~~~~~i~~v~fspd-----g~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s 1014 (1114)
. .-+ .++.+++++|| .+.+++|+...+.++.-.-..-........-.++|.++.| .|.++|-++
T Consensus 109 ~-----df~----rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWan 177 (846)
T KOG2066|consen 109 Y-----DFK----RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWAN 177 (846)
T ss_pred E-----ecC----CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEec
Confidence 1 111 26789999998 5667775554477766432222222222344789999999 678888887
Q ss_pred cCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccC
Q 001248 1015 LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1015 ~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~ 1079 (1114)
.+| |+|||+.+++.+..+++....+ .....+-.+.|.+ ...|+.| ...+|++..|..
T Consensus 178 d~G-v~vyd~~~~~~l~~i~~p~~~~----R~e~fpphl~W~~--~~~LVIG-W~d~v~i~~I~~ 234 (846)
T KOG2066|consen 178 DDG-VKVYDTPTRQRLTNIPPPSQSV----RPELFPPHLHWQD--EDRLVIG-WGDSVKICSIKK 234 (846)
T ss_pred CCC-cEEEeccccceeeccCCCCCCC----CcccCCCceEecC--CCeEEEe-cCCeEEEEEEec
Confidence 665 9999999999999888555222 3335566889986 3556655 677889999883
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.4e-07 Score=102.59 Aligned_cols=198 Identities=16% Similarity=0.195 Sum_probs=144.3
Q ss_pred ccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCC--cEE
Q 001248 850 KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS--QLC 927 (1114)
Q Consensus 850 ~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~--~v~ 927 (1114)
+..+++..|....+|++|+- +.++|++|+-.|.|++|++.+|.......+|.++|+-+.-+.||..+.+.+.-. -..
T Consensus 1092 r~w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred ccchhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence 44456777888899999999 889999999999999999999999999999999999999999998877655443 467
Q ss_pred EEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCeEEEEEcCCCceeeeeecC--CCCcCeeEEEEC
Q 001248 928 VWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPR--ESSAPITHATFS 1004 (1114)
Q Consensus 928 iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~--~h~~~v~~l~~s 1004 (1114)
+|++.+--. ....+ ..-.++.|+..-..-+.| ......+||+.++....++..+ +.+..=.+..||
T Consensus 1171 LW~~~s~~~----~~Hsf-------~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~Fs 1239 (1516)
T KOG1832|consen 1171 LWDASSTGG----PRHSF-------DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFS 1239 (1516)
T ss_pred HhccccccC----ccccc-------cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccC
Confidence 999876111 11111 245788998876655554 4467889999999877664321 123344778899
Q ss_pred CCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1005 CDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1005 ~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
|+.++++ .|| .+||+...+.+++|..-.... .=.|+|. |..++.-+ .|||+.+-+
T Consensus 1240 P~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~-----------~G~FHP~-g~eVIINS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1240 PCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYG-----------GGGFHPS-GNEVIINS-----EIWDMRTFK 1294 (1516)
T ss_pred CCcceEe---eCc--eeeeeccHHHHhhhhhheecc-----------cccccCC-CceEEeec-----hhhhhHHHH
Confidence 9999887 566 479999888887776211111 2357884 66666555 578887766
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.0011 Score=64.95 Aligned_cols=145 Identities=10% Similarity=0.056 Sum_probs=95.2
Q ss_pred EEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCCeE
Q 001248 365 DFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIV 444 (1114)
Q Consensus 365 ~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i 444 (1114)
..-+|.+.+++.|+..+.+.--|..+|+..-+. --...|.+-+.- -|++++.|+..|.+
T Consensus 17 VV~~dskT~v~igSHs~~~~avd~~sG~~~We~--------------------ilg~RiE~sa~v-vgdfVV~GCy~g~l 75 (354)
T KOG4649|consen 17 VVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEA--------------------ILGVRIECSAIV-VGDFVVLGCYSGGL 75 (354)
T ss_pred EEecCCceEEEEecCCceEEEecCCCCcEEeeh--------------------hhCceeeeeeEE-ECCEEEEEEccCcE
Confidence 344566778999999999999999999875421 112233332222 47889999999999
Q ss_pred EEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCce
Q 001248 445 QIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQ 524 (1114)
Q Consensus 445 ~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 524 (1114)
++.+.++|........+..- . ......+++. ++..|+.|++.+.-|..+..++...+...+...+-++.+. + .
T Consensus 76 Yfl~~~tGs~~w~f~~~~~v--k-~~a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g-~-~ 148 (354)
T KOG4649|consen 76 YFLCVKTGSQIWNFVILETV--K-VRAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPG-D-G 148 (354)
T ss_pred EEEEecchhheeeeeehhhh--c-cceEEcCCCc--eEEEecCCCcEEEecccccceEEecccCCceeccceecCC-C-c
Confidence 99999999766543332211 1 1233456777 8999999999999999999998887643333333333332 2 2
Q ss_pred EEEEEecCCeEEE
Q 001248 525 FIFSTALDGKIKA 537 (1114)
Q Consensus 525 ~l~s~~~d~~i~~ 537 (1114)
.|+.+...|.+.-
T Consensus 149 sly~a~t~G~vla 161 (354)
T KOG4649|consen 149 SLYAAITAGAVLA 161 (354)
T ss_pred eEEEEeccceEEE
Confidence 4555555555443
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.3e-06 Score=88.05 Aligned_cols=151 Identities=14% Similarity=0.154 Sum_probs=112.3
Q ss_pred EEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCc
Q 001248 876 AIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD 955 (1114)
Q Consensus 876 a~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 955 (1114)
++.+.+..|-+-|+++|- -..|. ..+.|.++.|...++++..|+..|.|...|+..+......+...+-. ...|
T Consensus 228 fs~G~sqqv~L~nvetg~-~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh----~Ssv 301 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGH-QQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYH----DSSV 301 (425)
T ss_pred ecccccceeEEEEeeccc-ccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEc----Ccch
Confidence 334456778888988864 24444 56779999999888999999999999999998764333333222211 1366
Q ss_pred eEEEEcc-CCcEEEE-EeCCeEEEEEcCCCce---eeeeecCCCCc--CeeEEEECCCCCEEEEEEcCCeEEEEEcCCCe
Q 001248 956 TRVQFHQ-DQIHFLV-VHETQLAIFETTKLEC---VKQWVPRESSA--PITHATFSCDSQLVYACFLDATVCVFSAANLK 1028 (1114)
Q Consensus 956 ~~v~fsp-dg~~l~~-~~d~~i~iwd~~~~~~---~~~~~~~~h~~--~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~ 1028 (1114)
+++..-. ++.+|.+ +.+|+|++||.+..++ +.++. +|.. .-.-+-+.+....+++++.|...|||.++.|.
T Consensus 302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYe--GHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYE--GHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH 379 (425)
T ss_pred hhhhhhccccceEeeccCcCceeEeeehhhhcccceeeee--cccccccccccccccccceEEEccCeeEEEEEecccCc
Confidence 7776655 6666666 7999999999998887 77766 6633 33344556778889999999999999999999
Q ss_pred eeEEeC
Q 001248 1029 LRCRIN 1034 (1114)
Q Consensus 1029 ~~~~~~ 1034 (1114)
++++++
T Consensus 380 Ll~tip 385 (425)
T KOG2695|consen 380 LLCTIP 385 (425)
T ss_pred eeeccC
Confidence 999987
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.7e-06 Score=81.54 Aligned_cols=198 Identities=15% Similarity=0.118 Sum_probs=119.7
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEEcccceEE------------EeecccccCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 001248 862 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK------------SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 929 (1114)
Q Consensus 862 i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~------------~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iw 929 (1114)
++.+.++. ...|+++..++.+..+...++.+. ..+..|+.+-.+-+.+--+..++++..||.+.++
T Consensus 39 ~~~~~~v~--~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~ 116 (319)
T KOG4714|consen 39 LSKVSLSA--EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVF 116 (319)
T ss_pred EEEeechh--hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEE
Confidence 66666663 557777777777666655444332 2233343333333333346789999999999999
Q ss_pred eCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEe------CCeEEEEEcCCCceeeeeecCCCCcCeeEEEE
Q 001248 930 SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH------ETQLAIFETTKLECVKQWVPRESSAPITHATF 1003 (1114)
Q Consensus 930 d~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~ 1003 (1114)
+.+.--. ..-++...+. ...+.++-..+.++.++. -+..++|+++-.+....-. .....|++++-
T Consensus 117 s~~~~~~---~~~~i~~~~~----~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~--~~~~~v~~l~~ 187 (319)
T KOG4714|consen 117 STDKDLA---LMSRIPSIHS----GSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK--KALDAVTALCS 187 (319)
T ss_pred echHHHh---hhhhcccccc----cccccceeecccEEecCCcceEeeccceeeecccccccccccc--cccccchhhhC
Confidence 9876111 0011111111 112233334455555532 3455666655433322111 11345999999
Q ss_pred CCCCCE-EEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccC
Q 001248 1004 SCDSQL-VYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1004 s~dg~~-l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~ 1079 (1114)
.|..+. +++|+.||.+-+||.+.......+ +.. | ...++ .+.|+|.++..|+++++||.+..||-++
T Consensus 188 hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~----l~a--h-k~~i~--eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 188 HPAQQHLVCCGTDDGIVGLWDARNVAMPVSL----LKA--H-KAEIW--EVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred CcccccEEEEecCCCeEEEEEcccccchHHH----HHH--h-hhhhh--heeccCCCchheeEecCCCcEEEEcCCC
Confidence 997765 578889999999999987443222 121 2 22356 7999999999999999999999999885
|
|
| >PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10 | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.2e-06 Score=83.25 Aligned_cols=132 Identities=22% Similarity=0.245 Sum_probs=97.5
Q ss_pred HHHHHHHhhccCHHHHHHHhccCc--cccCcccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHH
Q 001248 38 MKYFEDEVHNGNWDDVEKYLSGFT--KVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEI 115 (1114)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~lell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l 115 (1114)
...++++|++|+++.|++.++... +... ...+.|.|+.|+|+|++..++..+|+.+.|+.+.|......+.++.+
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~---~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~ 81 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKR---NSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKL 81 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhc---CCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 578999999999999999999872 2221 23599999999999999999999999999999976654355667777
Q ss_pred HHHhccccccc--hhhhccCCCChHHHHHHHHHHHhhcccCCCcccccCCCCCc-hhHHHHHHHHhHHHH
Q 001248 116 TQLLTLENFRE--NEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLK-NSRLRTLINQSLNWQ 182 (1114)
Q Consensus 116 ~~l~~~~~~~~--~~~~~~~~~~~~~R~~l~~~l~~~~~~~~~~~~~~~~~~~p-~~rL~~ll~qa~~~Q 182 (1114)
..++....... ...+...-+ ...|+++++.+.+.+-...- +| .+.|..++++....+
T Consensus 82 ~~lL~~~~~~~~~~s~~~~l~~-~~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~l 141 (145)
T PF10607_consen 82 MSLLAYPDPEEPLPSPYKELLS-PERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSAL 141 (145)
T ss_pred HHHHHcCCcccccchHHHHHhC-hHHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHHh
Confidence 77777765544 223332222 37789999998886655322 33 467888888876654
|
RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined []. |
| >KOG0396 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.6e-06 Score=87.08 Aligned_cols=121 Identities=12% Similarity=0.201 Sum_probs=99.9
Q ss_pred hHHHHHHHHHHHhhcCHHHHHHHHHHhcCCC--------ccHHHHHHHhhccCHHHHHHHhccCc-cccCcccchhhHHH
Q 001248 5 SRELVFLILQFLDEEKFKETVHKLEQESGFF--------FNMKYFEDEVHNGNWDDVEKYLSGFT-KVDDNRYSMKIFFE 75 (1114)
Q Consensus 5 ~~~v~~li~q~L~~~g~~~s~~~l~~Esg~~--------~~~~~~~~~i~~g~w~~~~~~~~~~~-~~~~~~~~~~~~~~ 75 (1114)
+.-+.|+|..||..+||.+||..|-++|.+. .++..++++|+.|+...|+...+.-. .+. +....+-|.
T Consensus 115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~Lk--K~~S~lEf~ 192 (389)
T KOG0396|consen 115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELK--KEESSLEFQ 192 (389)
T ss_pred HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH--hccchhhhH
Confidence 4558899999999999999999999999985 13778899999999999988777651 111 122348899
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHHhccccccch
Q 001248 76 IRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFREN 127 (1114)
Q Consensus 76 l~~~~~lell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~ 127 (1114)
++.|+|+||++.+++.+|+.+.++.|.|........++....++.++.....
T Consensus 193 lRlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t~~ 244 (389)
T KOG0396|consen 193 LRLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYTSS 244 (389)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccccCc
Confidence 9999999999999999999999999999987778888888888877654433
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.38 E-value=6.3e-05 Score=85.07 Aligned_cols=185 Identities=11% Similarity=0.048 Sum_probs=116.5
Q ss_pred EeeCCCEEEEEe--CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCC---C-cEEEEEcccceEEEeec
Q 001248 826 LSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD---S-SIQIYNVRVDEVKSKLK 899 (1114)
Q Consensus 826 ~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~d---g-~v~iwd~~~~~~~~~l~ 899 (1114)
+++||+.+...+ .+.+.+.|..+.+...++.... ....++++| +++++++.+.+ | ++..-+..+...+..+.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn 277 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN 277 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEEc
Confidence 456887765444 5778899998877766654322 456788999 78888777532 2 22222222111111111
Q ss_pred ccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccc-ccccccCCCCCCCCCCceEEEEccCCcEEEEE--eCCeEE
Q 001248 900 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK-NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLA 976 (1114)
Q Consensus 900 ~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~--~d~~i~ 976 (1114)
- ..+ -++.++|++... .++.|.+.|..+..... .....++.+. ....+.+||||++++++ .+..+.
T Consensus 278 i--~~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGK-----sPHGV~vSPDGkylyVanklS~tVS 346 (635)
T PRK02888 278 I--ARI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPK-----NPHGVNTSPDGKYFIANGKLSPTVT 346 (635)
T ss_pred h--HHH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCC-----CccceEECCCCCEEEEeCCCCCcEE
Confidence 0 000 133457877665 36789999988710000 1112222232 45889999999999994 578999
Q ss_pred EEEcCCCce------------eeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCC
Q 001248 977 IFETTKLEC------------VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1026 (1114)
Q Consensus 977 iwd~~~~~~------------~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~ 1026 (1114)
|+|+.+.+. +.+... .......+|.++|....+-..|..|..|++.+
T Consensus 347 VIDv~k~k~~~~~~~~~~~~vvaevev---GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 347 VIDVRKLDDLFDGKIKPRDAVVAEPEL---GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEEChhhhhhhhccCCccceEEEeecc---CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 999988663 333322 44567789999998888888999999999987
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.0028 Score=75.58 Aligned_cols=275 Identities=14% Similarity=0.128 Sum_probs=148.9
Q ss_pred ceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCcccee
Q 001248 576 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR 655 (1114)
Q Consensus 576 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~ 655 (1114)
.+..+.|..+.+.++.+...|.|.+-|..+....-.-... ..|.+++||||+..++..+..+++.+-.- +- ..+.
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd---~GI~aaswS~Dee~l~liT~~~tll~mT~-~f-~~i~ 144 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVD---NGISAASWSPDEELLALITGRQTLLFMTK-DF-EPIA 144 (1265)
T ss_pred ceEEEEEecccceEEEEecCCcEEEEcccccceeeeeecc---CceEEEeecCCCcEEEEEeCCcEEEEEec-cc-cchh
Confidence 5666777777778999999999999988776543332222 35899999999999999998888776432 11 0110
Q ss_pred eccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCC
Q 001248 656 TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS 735 (1114)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~ 735 (1114)
.-.-+..... ....+..+....-.-+.-..+.
T Consensus 145 E~~L~~d~~~------------------------------------------------~sk~v~VGwGrkeTqfrgs~gr 176 (1265)
T KOG1920|consen 145 EKPLDADDER------------------------------------------------KSKFVNVGWGRKETQFRGSEGR 176 (1265)
T ss_pred cccccccccc------------------------------------------------ccccceecccccceeeecchhh
Confidence 0000000000 0000111111100001100000
Q ss_pred CCccc---cccccCccccccceEEEEEccCcceeeec-----ccCceEEEEeecccccCCCCCccccccccccCCCCCcc
Q 001248 736 EPNQC---RSLRLPENLRATKISRLIFTNSGNAILAL-----ASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIM 807 (1114)
Q Consensus 736 ~~~~~---~~~~~~~~~~~~~i~~l~~s~~~~~l~~~-----~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~ 807 (1114)
....- ..-..+.......=..+.|--||.++++. .....++||+-. |.+
T Consensus 177 ~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-----------------------g~L 233 (1265)
T KOG1920|consen 177 QAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-----------------------GAL 233 (1265)
T ss_pred hcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-----------------------chh
Confidence 00000 00000000012233568899999988773 222678888743 111
Q ss_pred ccccCCCCCCCCCccEEEEeeCCCEEEEEe----CCeEEEEEcCC---CccccccCCCCCCeEEEEEecCCCcEEEE---
Q 001248 808 MTNDVTDSNPEEAVPCFALSKNDSYVMSAS----GGKISLFNMMT---FKTMATFMPPPPAATFLAFHPQDNNIIAI--- 877 (1114)
Q Consensus 808 ~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~----dg~i~iwd~~~---~~~~~~~~~~~~~i~~l~~sp~d~~~la~--- 877 (1114)
-.. .......-.+++|-|.|..+++-. |+.|.+|.... +.....++....+|..++|+. ++.+||+
T Consensus 234 ns~---se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns-~sdiLAv~~~ 309 (1265)
T KOG1920|consen 234 NST---SEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNS-NSDILAVVTS 309 (1265)
T ss_pred hcc---cCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecC-CCCceeeeec
Confidence 100 000223345789999999999763 56799998653 222233343444599999999 8999998
Q ss_pred EeCCCcEEEEEcccc--eEEEeecccccCeeEEEEcCCC-CEEEEEeCCCcEEEEeCC
Q 001248 878 GMDDSSIQIYNVRVD--EVKSKLKGHSKRITGLAFSHAL-NVLVSSGADSQLCVWSSD 932 (1114)
Q Consensus 878 g~~dg~v~iwd~~~~--~~~~~l~~h~~~V~~l~~s~d~-~~l~s~s~D~~v~iwd~~ 932 (1114)
......|++|-+... -+.+.+.-..... +.|+|.. ..|..-..+|...++++.
T Consensus 310 ~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~~ 365 (1265)
T KOG1920|consen 310 NLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDFA 365 (1265)
T ss_pred ccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEEE
Confidence 455556999988763 2333343333322 7888743 233333366666665543
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00012 Score=86.52 Aligned_cols=275 Identities=10% Similarity=0.148 Sum_probs=155.8
Q ss_pred cccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeC
Q 001248 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d 829 (1114)
....|.++.|..+...++.+...|.|.+-|....... ++. .-...|.+++||||
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e--------------------ivg------~vd~GI~aaswS~D 120 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLELE--------------------IVG------NVDNGISAASWSPD 120 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEccccccee--------------------eee------eccCceEEEeecCC
Confidence 3478999999999999999999999887654321111 011 14677999999999
Q ss_pred CCEEEEEeC-CeEEEEEcCCCccccccCCC-----CCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceE-EEeecccc
Q 001248 830 DSYVMSASG-GKISLFNMMTFKTMATFMPP-----PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV-KSKLKGHS 902 (1114)
Q Consensus 830 ~~~l~~~~d-g~i~iwd~~~~~~~~~~~~~-----~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~-~~~l~~h~ 902 (1114)
++.++..+. +++.+ ...+..++....-+ .+....+-|-. ..+.+ -| ..|.....+....+. .....-|
T Consensus 121 ee~l~liT~~~tll~-mT~~f~~i~E~~L~~d~~~~sk~v~VGwGr-keTqf-rg-s~gr~~~~~~~~~ek~~~~~~~~- 195 (1265)
T KOG1920|consen 121 EELLALITGRQTLLF-MTKDFEPIAEKPLDADDERKSKFVNVGWGR-KETQF-RG-SEGRQAARQKIEKEKALEQIEQD- 195 (1265)
T ss_pred CcEEEEEeCCcEEEE-Eeccccchhccccccccccccccceecccc-cceee-ec-chhhhcccccccccccccchhhc-
Confidence 999999885 55544 44444444332211 11122222221 00000 01 111111111111100 0101112
Q ss_pred cCeeEEEEcCCCCEEEE-----EeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE----EeCC
Q 001248 903 KRITGLAFSHALNVLVS-----SGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV----VHET 973 (1114)
Q Consensus 903 ~~V~~l~~s~d~~~l~s-----~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~----~~d~ 973 (1114)
+.=++|.|--||.++|+ ....+.|+|||-+. .... ..... .+.-.+++|-|.|..+++ .+|+
T Consensus 196 ~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg-~Lns---~se~~-----~~l~~~LsWkPsgs~iA~iq~~~sd~ 266 (1265)
T KOG1920|consen 196 DHKTSISWRGDGEYFAVSFVESETGTRKIRVYDREG-ALNS---TSEPV-----EGLQHSLSWKPSGSLIAAIQCKTSDS 266 (1265)
T ss_pred cCCceEEEccCCcEEEEEEEeccCCceeEEEecccc-hhhc---ccCcc-----cccccceeecCCCCeEeeeeecCCCC
Confidence 22356899999999987 33337899999883 2211 11111 123368999999999998 2566
Q ss_pred eEEEEEcCCCceeeeeec--CCCCcCeeEEEECCCCCEEEE---EEcCCeEEEEEcCCCeee--EEeCCCcccCCCCCCC
Q 001248 974 QLAIFETTKLECVKQWVP--RESSAPITHATFSCDSQLVYA---CFLDATVCVFSAANLKLR--CRINPSAYLPAGVSSS 1046 (1114)
Q Consensus 974 ~i~iwd~~~~~~~~~~~~--~~h~~~v~~l~~s~dg~~l~s---~s~Dg~I~vwd~~~~~~~--~~~~~~~~~~~~~~~~ 1046 (1114)
.|.+|.-+..+ ...+.. .....+|..++|+.++..||+ ......|++|-+.+..-- +.+. ++..
T Consensus 267 ~IvffErNGL~-hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~----~~~~---- 337 (1265)
T KOG1920|consen 267 DIVFFERNGLR-HGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQ----FSQK---- 337 (1265)
T ss_pred cEEEEecCCcc-ccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEe----cccc----
Confidence 78888865332 222221 122344999999999999987 444455999998877532 2222 2211
Q ss_pred CccceEEEecCCCCCeEEEEeCCCcEEEEec
Q 001248 1047 NVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1077 (1114)
Q Consensus 1047 ~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i 1077 (1114)
. -+.|+|.....|..-..+|...+.++
T Consensus 338 -~---~~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 338 -A---LLMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred -c---cccccCCCceeEEEEecCCcEEEEEE
Confidence 1 16677655555555555665555444
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.1e-05 Score=86.50 Aligned_cols=224 Identities=12% Similarity=0.037 Sum_probs=137.9
Q ss_pred eCCCEEEEEe--CCeEEEEEcCCCccccccCC------C---------CCCeEE-----EEEecCCCcEEE-EEeCCCcE
Q 001248 828 KNDSYVMSAS--GGKISLFNMMTFKTMATFMP------P---------PPAATF-----LAFHPQDNNIIA-IGMDDSSI 884 (1114)
Q Consensus 828 ~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~------~---------~~~i~~-----l~~sp~d~~~la-~g~~dg~v 884 (1114)
.||+||..-. +..|-..++...++-+.+.. | ...|.+ +=++| ||+.+. +.-..+.+
T Consensus 139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~Plpn-DGk~l~~~~ey~~~v 217 (635)
T PRK02888 139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPN-DGKDLDDPKKYRSLF 217 (635)
T ss_pred cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCC-CCCEeecccceeEEE
Confidence 4888998887 45566666655444322211 1 112221 22445 555443 23344677
Q ss_pred EEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCc--EEEEeCCCCccccccccccCCCCCCCCCCceEEEEcc
Q 001248 885 QIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ--LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 962 (1114)
Q Consensus 885 ~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fsp 962 (1114)
.+.|..+.+...++.--. .-..+++++||+++++.+.+.. ..+-.+...+......+... ..-++.+
T Consensus 218 SvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~----------~iea~vk 286 (635)
T PRK02888 218 TAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA----------RIEEAVK 286 (635)
T ss_pred EEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH----------HHHHhhh
Confidence 788888877666654322 3456899999999988863221 12222222111100000000 0113455
Q ss_pred CCcEEEEEeCCeEEEEEcCC-----CceeeeeecCCCCcCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCCee-------
Q 001248 963 DQIHFLVVHETQLAIFETTK-----LECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKL------- 1029 (1114)
Q Consensus 963 dg~~l~~~~d~~i~iwd~~~-----~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s-~Dg~I~vwd~~~~~~------- 1029 (1114)
+|++..+ .++.|.+.|..+ .+.+..+.. ......+.+||||+++++++ .+.+|.|.|+.+.+.
T Consensus 287 dGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIPV---GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~ 362 (635)
T PRK02888 287 AGKFKTI-GGSKVPVVDGRKAANAGSALTRYVPV---PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK 362 (635)
T ss_pred CCCEEEE-CCCEEEEEECCccccCCcceEEEEEC---CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence 7887666 467899999998 344554443 56788999999999987655 588999999998663
Q ss_pred -----eEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccC
Q 001248 1030 -----RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1030 -----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~ 1079 (1114)
..+++ + | .-|+..+|++ +|+...|-.-|..|..|++.+
T Consensus 363 ~~~~vvaeve----v--G-----lGPLHTaFDg-~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 363 PRDAVVAEPE----L--G-----LGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ccceEEEeec----c--C-----CCcceEEECC-CCCEEEeEeecceeEEEehHH
Confidence 33333 2 2 4477899998 578888999999999999987
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.3e-05 Score=91.12 Aligned_cols=181 Identities=15% Similarity=0.173 Sum_probs=133.0
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeE
Q 001248 829 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG 907 (1114)
Q Consensus 829 d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 907 (1114)
++..++.|+ ...+..+|+.+.+..+......+.|+-+.. +++++.+|...|+|.+-|..+.+.+.++..|++.|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 445666666 778888999988887777655656666665 6789999999999999999999999999999999986
Q ss_pred EEEcCCCCEEEEEeC---------CCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccC--CcEEEEEeCCeEE
Q 001248 908 LAFSHALNVLVSSGA---------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD--QIHFLVVHETQLA 976 (1114)
Q Consensus 908 l~~s~d~~~l~s~s~---------D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspd--g~~l~~~~d~~i~ 976 (1114)
+.. .|+.|+++|. |.-|+|||+..-.. ..++....+ ..-+.|.|. .+..+++..|+..
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra--l~PI~~~~~-------P~flrf~Psl~t~~~V~S~sGq~q 291 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA--LSPIQFPYG-------PQFLRFHPSLTTRLAVTSQSGQFQ 291 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhc--cCCcccccC-------chhhhhcccccceEEEEeccccee
Confidence 666 5889999876 45689999987332 222332222 244667774 3444457888888
Q ss_pred EEEcCCCce--eeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEE
Q 001248 977 IFETTKLEC--VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1023 (1114)
Q Consensus 977 iwd~~~~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd 1023 (1114)
+-|..+..- ...+.....+..+..+++|++|..||.|..+|.|.+|.
T Consensus 292 ~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 292 FVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 888443221 22222223355699999999999999999999999998
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.25 E-value=7e-05 Score=85.16 Aligned_cols=208 Identities=13% Similarity=0.145 Sum_probs=131.2
Q ss_pred EEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccC-eeEEEEcCCCCEEEEEeCCCc-----EEEEeCCCCcccc-
Q 001248 866 AFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFSHALNVLVSSGADSQ-----LCVWSSDGWEKQK- 938 (1114)
Q Consensus 866 ~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~s~d~~~l~s~s~D~~-----v~iwd~~~~~~~~- 938 (1114)
+|++ ++..+|.|+.+|.|.+++- +-+.+..++++... |+.+-...+..+|++.+.|+. |+||+++..+...
T Consensus 30 c~~s-~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSS-STGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcC-CCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 3466 7789999999999988873 34556788888777 554444444478999888865 8999998754333
Q ss_pred cccc---ccCCCCC-CCCCCceEEEEccCCcEEEEE-eCCeEEEEEcCC--CceeeeeecCCCCcCeeEEEECCCCCEEE
Q 001248 939 NRFL---QIPTGRT-PTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK--LECVKQWVPRESSAPITHATFSCDSQLVY 1011 (1114)
Q Consensus 939 ~~~~---~~~~~~~-~~~~~i~~v~fspdg~~l~~~-~d~~i~iwd~~~--~~~~~~~~~~~h~~~v~~l~~s~dg~~l~ 1011 (1114)
..++ ....... ..+.++..++.+.+-+.+|+| .+|.|..+.-.- .+..+.-....-..+||.+++-.|++.++
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 2333 2222111 124578899999999999997 788888775321 11112222223377999999999999844
Q ss_pred EEEcCCeEEEEEcCCCee-eEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCCCcccCC
Q 001248 1012 ACFLDATVCVFSAANLKL-RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVP 1087 (1114)
Q Consensus 1012 s~s~Dg~I~vwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~~~~~~~ 1087 (1114)
-+..-..|.+|.+....+ ++.+. . ++.... +.+|++.-++ +++++ +..|.+++.....+.|..+
T Consensus 188 Fv~Tt~~V~~y~l~gr~p~~~~ld-----~---~G~~ln--Css~~~~t~q-fIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGRTPSLKVLD-----N---NGISLN--CSSFSDGTYQ-FICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred EEEecceeEEEEecCCCcceeeec-----c---CCccce--eeecCCCCcc-EEEec-CceEEEEcCCCcceeeeec
Confidence 444567899999884332 22222 1 122233 6667753322 44433 6778888877655444443
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.1e-05 Score=78.02 Aligned_cols=230 Identities=11% Similarity=0.077 Sum_probs=136.8
Q ss_pred EEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCC-CEEEE
Q 001248 841 ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL-NVLVS 919 (1114)
Q Consensus 841 i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~-~~l~s 919 (1114)
+++.+..+.+...-+..+...|..++|||....++..++.+..|.|.|+++...+.....| ..+++++|.-|. .+|..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 6777777777677777888899999999954558999999999999999999888888888 789999998765 56778
Q ss_pred EeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEE------EEccCCcEEEEEeCCeEEEEEcCCC--ceeeeeec
Q 001248 920 SGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRV------QFHQDQIHFLVVHETQLAIFETTKL--ECVKQWVP 991 (1114)
Q Consensus 920 ~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v------~fspdg~~l~~~~d~~i~iwd~~~~--~~~~~~~~ 991 (1114)
|...|.|.|||+...+............ .+|..+ ...+-|.+|+.+ --.+..|+.... ........
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~-----~pv~~i~~~~~n~~f~~gglLv~~-lt~l~f~ei~~s~~~~p~vlel 327 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTI-----NPVHKIAPVQPNKIFTSGGLLVFA-LTVLQFYEIVFSAECLPCVLEL 327 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhcc-----CcceeecccCccccccccceEEee-ehhhhhhhhhccccCCCccccc
Confidence 8899999999998755432222111110 122222 333445555442 222444544322 11111111
Q ss_pred CCCCcCeeEEEECCCCCEEEEEEcC-C------eEE-EEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeE
Q 001248 992 RESSAPITHATFSCDSQLVYACFLD-A------TVC-VFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEF 1063 (1114)
Q Consensus 992 ~~h~~~v~~l~~s~dg~~l~s~s~D-g------~I~-vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l 1063 (1114)
+..+...++++.+-.+.++....- . .|- --|..+|..++..+...+ .+. .......-..+.+.|.++|
T Consensus 328 -e~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~--Gs~-~~kl~t~~ai~~~~~nn~i 403 (463)
T KOG1645|consen 328 -EPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYF--GSK-QTKLSTTQAIRAVEDNNYI 403 (463)
T ss_pred -CCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeeccccc--CCc-ccccccccceeccccccEE
Confidence 113445555555544554433322 1 111 124456666665553332 111 1112222333434355554
Q ss_pred -EEEeCCCcEEEEeccCCC
Q 001248 1064 -ALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1064 -~s~~~Dg~v~vW~i~~~~ 1081 (1114)
.+|++.+++.+||+.+.+
T Consensus 404 v~~gd~tn~lil~D~~s~e 422 (463)
T KOG1645|consen 404 VVVGDSTNELILQDPHSFE 422 (463)
T ss_pred EEecCCcceeEEeccchhh
Confidence 466677899999999988
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0014 Score=68.73 Aligned_cols=248 Identities=17% Similarity=0.189 Sum_probs=148.2
Q ss_pred CcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEe----------CCCeEEEEEcc
Q 001248 381 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY----------SRHIVQIYSYH 450 (1114)
Q Consensus 381 g~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~----------~dg~i~iwd~~ 450 (1114)
+.|.|+|.++++.+... -.+ -.-.+..||||+.+.+++ ..-.|.+||..
T Consensus 17 ~rv~viD~d~~k~lGmi------------------~~g---~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~ 75 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMI------------------DTG---FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQ 75 (342)
T ss_dssp EEEEEEETTTTEEEEEE------------------EEE---SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETT
T ss_pred ceEEEEECCCCcEEEEe------------------ecc---cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecC
Confidence 47889998888776531 111 334477899999998753 23459999999
Q ss_pred CCceeeeeEeecc-cc----CCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceE
Q 001248 451 GGDEVRQHLEIDA-HV----GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQF 525 (1114)
Q Consensus 451 ~~~~~~~~~~l~~-h~----~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 525 (1114)
+-.....+ .+.. |. .....+++|.||+++++.-.+--.+|.|-|++.++.+..+.-- ....+ .|.++ .-
T Consensus 76 TL~~~~EI-~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~i--yP~~~-~~ 149 (342)
T PF06433_consen 76 TLSPTGEI-EIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLI--YPSGN-RG 149 (342)
T ss_dssp TTEEEEEE-EETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEE--EEEET-TE
T ss_pred cCcccceE-ecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEE--EecCC-Cc
Confidence 86544432 2222 11 2335679999999877777777888999999999988777521 11111 24444 34
Q ss_pred EEEEecCCeEEEEEcCCCCCeeee-----cCC----------------------CCeeEEEEEecCCCeEEe--------
Q 001248 526 IFSTALDGKIKAWLYDNLGSRVDY-----EAP----------------------GRWCTTMAYSADGTRTYQ-------- 570 (1114)
Q Consensus 526 l~s~~~d~~i~~wd~~~~~~~~~~-----~~~----------------------~~~v~~~~~s~~g~~~~~-------- 570 (1114)
+.+.|.||.+.-..++..+..... ... .+.|..+.++.+......
T Consensus 150 F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~ 229 (342)
T PF06433_consen 150 FSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDA 229 (342)
T ss_dssp EEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HH
T ss_pred eEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCcc
Confidence 778888888888887754433211 011 112223333332211110
Q ss_pred ----eecccceeEEEecCCCCEEEEEe---CC-------CeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCC-EEEE
Q 001248 571 ----GFRKRSLGVVQFDTTKNRFLAAG---DD-------FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC-LLAV 635 (1114)
Q Consensus 571 ----~~~~~~v~~~~~~~~~~~l~~~~---~d-------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~~ 635 (1114)
+-..+....+++++..++|++.- .+ ..|.++|+.+++.+..+.... .+.++.++.|.+ +|++
T Consensus 230 e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~---~~~Si~Vsqd~~P~L~~ 306 (342)
T PF06433_consen 230 EKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH---PIDSIAVSQDDKPLLYA 306 (342)
T ss_dssp HHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE---EESEEEEESSSS-EEEE
T ss_pred ccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC---ccceEEEccCCCcEEEE
Confidence 01112233467776666665532 11 248888999999999998643 478999999776 5554
Q ss_pred Ee-CCCcEEEEEccCCccceeeccc
Q 001248 636 ST-NDNGIKILATSDGIRLLRTFEN 659 (1114)
Q Consensus 636 ~~-~dg~i~iwd~~~~~~~~~~~~~ 659 (1114)
.+ .++.+.+||..+| +.++.+++
T Consensus 307 ~~~~~~~l~v~D~~tG-k~~~~~~~ 330 (342)
T PF06433_consen 307 LSAGDGTLDVYDAATG-KLVRSIEQ 330 (342)
T ss_dssp EETTTTEEEEEETTT---EEEEE--
T ss_pred EcCCCCeEEEEeCcCC-cEEeehhc
Confidence 44 5789999999999 66665543
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0002 Score=74.40 Aligned_cols=223 Identities=13% Similarity=0.163 Sum_probs=130.4
Q ss_pred cccCCCCCeeEEEEcCCCC-eEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEE
Q 001248 415 LVKDPGVSVNRVIWSPDGS-LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 493 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~-~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~i 493 (1114)
++.+|...|..++|||... +|..++.+.+|+|.|+.+...+. .+..| ..+++++|.-|..+ ++..|-..|.|.|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 5788999999999999777 78889999999999999977665 45566 78999999999887 7899999999999
Q ss_pred EeCCCCcc-eeEeec--cccCEEEEeeccC----CCceEEEEEecCCeEEEEEcCCCCC--eeeecCC-CCeeEEEEEec
Q 001248 494 WDATNGAK-QYIFEG--HEAPVYSVCPHHK----ENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAP-GRWCTTMAYSA 563 (1114)
Q Consensus 494 wd~~~~~~-~~~~~~--h~~~v~~~~~~~~----~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~-~~~v~~~~~s~ 563 (1114)
||++..+- +..+.+ ...+|..++..+. +.|.+++....+ +.+|.+.-... ...+... .+.+.++.+.+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 99986432 222222 2234444332110 112344433332 34555432211 1111111 11222222222
Q ss_pred CCCeEEe----------------------------------eeccc---ceeEEEecCCCCEEEE-EeCCCeEEEEECCC
Q 001248 564 DGTRTYQ----------------------------------GFRKR---SLGVVQFDTTKNRFLA-AGDDFSIKFWDMDS 605 (1114)
Q Consensus 564 ~g~~~~~----------------------------------~~~~~---~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~ 605 (1114)
-.+.++. |.... .-..+.-.++.++++. +++.+.+.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 1111110 00000 0011222334455554 55778999999999
Q ss_pred cceEEEeccCCCCCCcCeEEEcC-C-CCEEEEEeCCCcEEEEEcc
Q 001248 606 VQLLTSIDADGGLPASPRIRFNK-D-GCLLAVSTNDNGIKILATS 648 (1114)
Q Consensus 606 ~~~~~~~~~~~~~~~v~~~~~s~-d-~~~l~~~~~dg~i~iwd~~ 648 (1114)
++.++++... .+|..++... + +.+|++-+ |..++||..+
T Consensus 421 ~evvQ~l~~~---epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 421 FEVVQTLALS---EPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred hheeeecccC---cceeecceeecCCcchhhhee-cceEEEEecC
Confidence 9999998765 2455555543 3 34555544 5678887644
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.6e-06 Score=58.39 Aligned_cols=38 Identities=24% Similarity=0.419 Sum_probs=34.1
Q ss_pred ceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEE
Q 001248 984 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1023 (1114)
Q Consensus 984 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd 1023 (1114)
+++.++. +|...|++|+|+|++.+|++++.|+.|++||
T Consensus 2 ~~~~~~~--~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFR--GHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEE--SSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEc--CCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4455555 8999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.1e-06 Score=52.26 Aligned_cols=27 Identities=37% Similarity=0.551 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHhc
Q 001248 6 RELVFLILQFLDEEKFKETVHKLEQES 32 (1114)
Q Consensus 6 ~~v~~li~q~L~~~g~~~s~~~l~~Es 32 (1114)
+++++||++||.+.||.+||.+|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 579999999999999999999999996
|
The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0018 Score=75.44 Aligned_cols=155 Identities=15% Similarity=0.133 Sum_probs=93.3
Q ss_pred EEEecCCCcEEEEEeCCC------------------cEEEEEcccceEEEeecc--ccc----CeeEEEEc----CCCC-
Q 001248 865 LAFHPQDNNIIAIGMDDS------------------SIQIYNVRVDEVKSKLKG--HSK----RITGLAFS----HALN- 915 (1114)
Q Consensus 865 l~~sp~d~~~la~g~~dg------------------~v~iwd~~~~~~~~~l~~--h~~----~V~~l~~s----~d~~- 915 (1114)
.++.+ .+.++++++.++ .|.-+|..+|+.+...+. |.. ......+. -++.
T Consensus 222 pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~ 300 (488)
T cd00216 222 PTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKP 300 (488)
T ss_pred eeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCe
Confidence 45555 456777777665 799999999998877642 210 00111111 2343
Q ss_pred --EEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE------------------EeCCeE
Q 001248 916 --VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV------------------VHETQL 975 (1114)
Q Consensus 916 --~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~------------------~~d~~i 975 (1114)
.++.++.+|.+...|..+++..-...... ..++.+| +...+. ..++.+
T Consensus 301 ~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~-----------~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l 368 (488)
T cd00216 301 VPAIVHAPKNGFFYVLDRTTGKLISARPEVE-----------QPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGL 368 (488)
T ss_pred eEEEEEECCCceEEEEECCCCcEeeEeEeec-----------cccccCC-ceEEEccccccccCcccccCCCCCCCceEE
Confidence 57788899999999999987543221110 1122223 111111 135677
Q ss_pred EEEEcCCCceeeeeecCCCC------cCe--eEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeC
Q 001248 976 AIFETTKLECVKQWVPRESS------API--THATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 976 ~iwd~~~~~~~~~~~~~~h~------~~v--~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
.-.|..+|+.+-+.....+. .+. ..+. -.+.+|++++.||.|+.+|..+|+.+-+.+
T Consensus 369 ~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 369 AALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred EEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence 78888888776655432111 111 1122 256788889999999999999999998876
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0005 Score=76.21 Aligned_cols=283 Identities=11% Similarity=0.159 Sum_probs=142.0
Q ss_pred ceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccc------------cccccccCC--------CCCccccccC
Q 001248 753 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATA------------SVAPQLWQP--------PSGIMMTNDV 812 (1114)
Q Consensus 753 ~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~------------~~~~~~w~~--------~~g~~~~~~~ 812 (1114)
.|+.+.|+++..-|+++...|.|.||.+............. +..-.+-|+ ..|..-...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 57899999998889999999999999998764432000000 001111111 1122111112
Q ss_pred CCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccc--cC------CCCCCeEEEEEec----CCC---cEEE
Q 001248 813 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMAT--FM------PPPPAATFLAFHP----QDN---NIIA 876 (1114)
Q Consensus 813 ~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~--~~------~~~~~i~~l~~sp----~d~---~~la 876 (1114)
.. ..++|++++.| |--++|+|. +|.+.|.|++....+.. +. .....++++.|+- +|+ -.|.
T Consensus 83 ~~--~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 DA--KQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp -----S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred ec--cCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 22 47889999997 555999999 89999999987665543 11 1234688888872 133 4788
Q ss_pred EEeCCCcEEEEEccc---ceEEEeec----ccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccc--ccc-CC
Q 001248 877 IGMDDSSIQIYNVRV---DEVKSKLK----GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRF--LQI-PT 946 (1114)
Q Consensus 877 ~g~~dg~v~iwd~~~---~~~~~~l~----~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~--~~~-~~ 946 (1114)
+|+..|.+.+|.+.- +.....+. .+.++|..+ ...+.++++...... ++. ..
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I------------------~~i~~~~G~~a~At~~~~~~l~~ 221 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSI------------------IPINADTGESALATISAMQGLSK 221 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EE------------------EEEETTT--B-B-BHHHHHGGGG
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEE------------------EEEECCCCCcccCchhHhhcccc
Confidence 899999999998742 21111111 122222222 222444333211111 110 01
Q ss_pred CCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEEC-----CCCCEEEEEEcCCeEEE
Q 001248 947 GRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFS-----CDSQLVYACFLDATVCV 1021 (1114)
Q Consensus 947 ~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s-----~dg~~l~s~s~Dg~I~v 1021 (1114)
+. +...+++++++..++++...+.+...... ........+++- ..+..|++-..+|.|++
T Consensus 222 g~-------------~i~g~vVvvSe~~irv~~~~~~k~~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i 286 (395)
T PF08596_consen 222 GI-------------SIPGYVVVVSESDIRVFKPPKSKGAHKSF--DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRI 286 (395)
T ss_dssp T-----------------EEEEEE-SSEEEEE-TT---EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEE
T ss_pred CC-------------CcCcEEEEEcccceEEEeCCCCcccceee--ccccccceEEEEeecccCCceEEEEEECCCcEEE
Confidence 10 01235666889999999998887765544 112223334442 35667888999999999
Q ss_pred EEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccC
Q 001248 1022 FSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1022 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~ 1079 (1114)
|.+...+.+..+... ...+..... ..++++ +|+.++-.+ ...+.++.+-.
T Consensus 287 ~SLP~Lkei~~~~l~----~~~d~~~~~--~ssis~-~Gdi~~~~g-psE~~l~sv~~ 336 (395)
T PF08596_consen 287 YSLPSLKEIKSVSLP----PPLDSRRLS--SSSISR-NGDIFYWTG-PSEIQLFSVWG 336 (395)
T ss_dssp EETTT--EEEEEE-S----S---HHHHT--T-EE-T-TS-EEEE-S-SSEEEEEEEES
T ss_pred EECCCchHhhcccCC----Ccccccccc--ccEECC-CCCEEEEeC-cccEEEEEEEc
Confidence 999999999887732 111111122 455566 577666554 44555555533
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0017 Score=75.76 Aligned_cols=245 Identities=10% Similarity=0.065 Sum_probs=138.8
Q ss_pred CEEEEEe-CCeEEEEEcCCCccccccCCCCCC-----eE-EEEEecCCCcEEEEEe---------CCCcEEEEEcccceE
Q 001248 831 SYVMSAS-GGKISLFNMMTFKTMATFMPPPPA-----AT-FLAFHPQDNNIIAIGM---------DDSSIQIYNVRVDEV 894 (1114)
Q Consensus 831 ~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~-----i~-~l~~sp~d~~~la~g~---------~dg~v~iwd~~~~~~ 894 (1114)
..++.++ ++.|.-+|..+++.+..+...... +. ...+. + .+++.++ .+|.|+-+|..+|+.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--K-KLVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--C-CEEEEeccccccccCCCCcEEEEEECCCCce
Confidence 4555555 899999999999988776543321 11 12222 2 3455554 367899999999998
Q ss_pred EEeeccccc--------------------Ce-eEEEEcCCCCEEEEEeCCC------------------cEEEEeCCCCc
Q 001248 895 KSKLKGHSK--------------------RI-TGLAFSHALNVLVSSGADS------------------QLCVWSSDGWE 935 (1114)
Q Consensus 895 ~~~l~~h~~--------------------~V-~~l~~s~d~~~l~s~s~D~------------------~v~iwd~~~~~ 935 (1114)
+..+..... .| .+.++.+.+..++.++.++ .|.-+|.++++
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 876643211 01 1234444566777777665 68888888877
Q ss_pred cccccccccCCCCC-CCCCCceEEEE-ccCCc---EEEE-EeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCE
Q 001248 936 KQKNRFLQIPTGRT-PTAQSDTRVQF-HQDQI---HFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL 1009 (1114)
Q Consensus 936 ~~~~~~~~~~~~~~-~~~~~i~~v~f-spdg~---~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 1009 (1114)
..-........... .......-... .-+|. .+++ +.+|.+..+|.++|+.+-..... ...++.+| ..
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-----~~~~~~~~--~~ 340 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-----EQPMAYDP--GL 340 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-----ccccccCC--ce
Confidence 54322111110000 00000000000 12343 3444 47899999999999987665421 11233444 33
Q ss_pred EEEE------------------EcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCc
Q 001248 1010 VYAC------------------FLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGG 1071 (1114)
Q Consensus 1010 l~s~------------------s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~ 1071 (1114)
++.+ ..+|.+.-.|+.+|+.+-+..................-.+.. .+.+|++++.||.
T Consensus 341 vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~---~g~~v~~g~~dG~ 417 (488)
T cd00216 341 VYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT---AGNLVFAGAADGY 417 (488)
T ss_pred EEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe---cCCeEEEECCCCe
Confidence 3332 236788899999999887766321000000000010001111 3578999999999
Q ss_pred EEEEeccCCCCcccCCC
Q 001248 1072 VHVFEPLESEGKWGVPP 1088 (1114)
Q Consensus 1072 v~vW~i~~~~~~~~~~~ 1088 (1114)
|+.+|..+|+..|+.+-
T Consensus 418 l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 418 FRAFDATTGKELWKFRT 434 (488)
T ss_pred EEEEECCCCceeeEEEC
Confidence 99999999998888753
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0094 Score=66.48 Aligned_cols=105 Identities=17% Similarity=0.308 Sum_probs=63.2
Q ss_pred cCCCCeEEEEEe--------cCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEE
Q 001248 367 HPVQQTLLLVGT--------NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 438 (1114)
Q Consensus 367 spdg~~ll~tg~--------~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 438 (1114)
|||++++|+.-. ..+.+.|||+++++... +......+....|||||+++|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------------------l~~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------------------LTPPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------------------SS-EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------------------CcCCccccccceeecCCCeeEEE
Confidence 789998666321 23578899999876543 22225578999999999999998
Q ss_pred eCCCeEEEEEccCCceeeeeEeeccc----------------cCCeeEEEecCCCCeeEEEEecCCCCEEEEe
Q 001248 439 YSRHIVQIYSYHGGDEVRQHLEIDAH----------------VGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495 (1114)
Q Consensus 439 ~~dg~i~iwd~~~~~~~~~~~~l~~h----------------~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd 495 (1114)
. ++.|.+++..++...+ + +..|- -+.-..+-|||||++++++. -.+..|..+.
T Consensus 61 ~-~~nly~~~~~~~~~~~-l-T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~-~d~~~v~~~~ 129 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQ-L-TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR-FDEREVPEYP 129 (353)
T ss_dssp E-TTEEEEESSTTSEEEE-S-ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE-EE-TTS-EEE
T ss_pred e-cCceEEEECCCCCeEE-e-ccccceeEEcCccceeccccccccccceEECCCCCEEEEEE-ECCcCCceEE
Confidence 5 5779999988775432 1 22220 12236788999999632222 2334444443
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00044 Score=77.34 Aligned_cols=158 Identities=13% Similarity=0.111 Sum_probs=93.4
Q ss_pred cceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCC
Q 001248 752 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 831 (1114)
Q Consensus 752 ~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~ 831 (1114)
..+....++++..++++++..|.|.|+.++. ...+.-... + .....|...|++++|++|++
T Consensus 77 ~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~-~~p~~~~~~----------------t--~~d~~~~~rVTal~Ws~~~~ 137 (726)
T KOG3621|consen 77 GITCVRSVSSVEYLVAAGTASGRVSVFQLNK-ELPRDLDYV----------------T--PCDKSHKCRVTALEWSKNGM 137 (726)
T ss_pred ceEEEEEecchhHhhhhhcCCceEEeehhhc-cCCCcceee----------------c--cccccCCceEEEEEeccccc
Confidence 4556677888888888899999999887764 221111111 1 11112788999999999999
Q ss_pred EEEEEe-CCeEEEEEcCCCc----cccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceE--EEeecccccC
Q 001248 832 YVMSAS-GGKISLFNMMTFK----TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV--KSKLKGHSKR 904 (1114)
Q Consensus 832 ~l~~~~-dg~i~iwd~~~~~----~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~--~~~l~~h~~~ 904 (1114)
.+.+|. .|+|.+-.+.+.. ..+.+......|..+.+.. +.+|++... .-.+++++.++. +.+-.-..-.
T Consensus 138 k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~LLVStl~--r~~Lc~tE~eti~QIG~k~R~~~~ 213 (726)
T KOG3621|consen 138 KLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SYLLVSTLT--RCILCQTEAETITQIGKKPRKSLI 213 (726)
T ss_pred EEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--ceehHhhhh--hhheeecchhHHHHhcCCCcCCcc
Confidence 999998 6999888887621 1223334456777777763 555554332 234455443321 1111101111
Q ss_pred eeEEEEcCC----CCEEEEEeCCCcEEEEeCCC
Q 001248 905 ITGLAFSHA----LNVLVSSGADSQLCVWSSDG 933 (1114)
Q Consensus 905 V~~l~~s~d----~~~l~s~s~D~~v~iwd~~~ 933 (1114)
-.+.+|-|. .+-.+.+++-| .|+|..+-
T Consensus 214 ~~GACF~~g~~~~q~~~IycaRPG-~RlWead~ 245 (726)
T KOG3621|consen 214 DFGACFFPGQCKAQKPQIYCARPG-LRLWEADF 245 (726)
T ss_pred ccceEEeeccccCCCceEEEecCC-CceEEeec
Confidence 244566554 34455566666 78887653
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00072 Score=77.29 Aligned_cols=202 Identities=13% Similarity=0.169 Sum_probs=136.0
Q ss_pred EEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCC-eEEEEEecCCCcEEEEEeCCC-----cEEEEEcccc----
Q 001248 824 FALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPA-ATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVD---- 892 (1114)
Q Consensus 824 v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~-i~~l~~sp~d~~~la~g~~dg-----~v~iwd~~~~---- 892 (1114)
-++++.+..+|.|+ +|.|.+.+- +.+.++.++.+... |+.+-... +..+|++.++|+ .|+||+++.-
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 35678888999998 899888874 34555777777777 44444433 446777777665 4899998752
Q ss_pred --eEEE--eecc-----cccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccC
Q 001248 893 --EVKS--KLKG-----HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 963 (1114)
Q Consensus 893 --~~~~--~l~~-----h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspd 963 (1114)
.++. .+.+ ...++.+++.|.+-+.+|.|-.+|.|..+.=+--.....+..-...+ ..+|+.++|..|
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~----~~pITgL~~~~d 182 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRG----KEPITGLALRSD 182 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccC----CCCceeeEEecC
Confidence 2331 2222 34678899999999999999999999888533211111111111222 258999999999
Q ss_pred CcE-EEEEeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEe
Q 001248 964 QIH-FLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1033 (1114)
Q Consensus 964 g~~-l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~ 1033 (1114)
++. +.++....|.+|.+.... ...-..+.|+..+.|-.|++....+++++ +..+.+|+.+....-..+
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf 251 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAF 251 (933)
T ss_pred CceeEEEEecceeEEEEecCCC-cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeee
Confidence 988 455788899999998444 44433557788999999987665455454 567999998755444333
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00054 Score=76.68 Aligned_cols=139 Identities=9% Similarity=0.033 Sum_probs=99.8
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
|...|.--+++..++| ++.|+.-|.+++|+-.+++.+.. ...+-.+.+..+.+|++..++|
T Consensus 32 ~~~~v~lTc~dst~~~-l~~GsS~G~lyl~~R~~~~~~~~------------------~~~~~~~~~~~~~vs~~e~lvA 92 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEY-LAMGSSAGSVYLYNRHTGEMRKL------------------KNEGATGITCVRSVSSVEYLVA 92 (726)
T ss_pred CcceEEEEEeecCCce-EEEecccceEEEEecCchhhhcc------------------cccCccceEEEEEecchhHhhh
Confidence 5556666677778886 99999999999999888776542 1223445677788999999999
Q ss_pred EEeCCCeEEEEEccCCceeeeeE--ee-ccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCc----ceeEeeccc
Q 001248 437 VAYSRHIVQIYSYHGGDEVRQHL--EI-DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA----KQYIFEGHE 509 (1114)
Q Consensus 437 s~~~dg~i~iwd~~~~~~~~~~~--~l-~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~h~ 509 (1114)
.|+..|.|.++-+..+....... .. ..|...|++++|++|+. .+++|...|+|.+-.+.+.. ..+.+....
T Consensus 93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d 170 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSED 170 (726)
T ss_pred hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccC
Confidence 99999999999887643322111 11 23778999999999999 69999999999988877621 112233344
Q ss_pred cCEEEEe
Q 001248 510 APVYSVC 516 (1114)
Q Consensus 510 ~~v~~~~ 516 (1114)
+.|..+.
T Consensus 171 s~IVQlD 177 (726)
T KOG3621|consen 171 SEIVQLD 177 (726)
T ss_pred cceEEee
Confidence 5565554
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00014 Score=83.01 Aligned_cols=184 Identities=11% Similarity=0.112 Sum_probs=129.0
Q ss_pred CCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeecccc
Q 001248 431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 510 (1114)
Q Consensus 431 dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 510 (1114)
++..++-|+-...+..+|+.+.+..+ ...-..+.|.-|. .+++ ++.+|...|+|.+-|..+.+.++++..|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r---~~~v~a~~v~imR--~Nnr--~lf~G~t~G~V~LrD~~s~~~iht~~aHs~ 218 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETR---TTNVSASGVTIMR--YNNR--NLFCGDTRGTVFLRDPNSFETIHTFDAHSG 218 (1118)
T ss_pred CCcceeecchhhheeeeecccceeee---eeeccCCceEEEE--ecCc--EEEeecccceEEeecCCcCceeeeeecccc
Confidence 45567778777788899999877554 2222233454444 3566 789999999999999999999999999999
Q ss_pred CEEEEeeccCCCceEEEEEec---------CCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEE
Q 001248 511 PVYSVCPHHKENIQFIFSTAL---------DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581 (1114)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~---------d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~ 581 (1114)
.|.++.. .|++|+++|. |..|++||++....+.-+..+.++ ..+.
T Consensus 219 siSDfDv----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P----------------------~flr 272 (1118)
T KOG1275|consen 219 SISDFDV----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP----------------------QFLR 272 (1118)
T ss_pred ceeeeec----cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc----------------------hhhh
Confidence 9998763 3468888875 556899999876655433332221 1233
Q ss_pred ecCCC-CEEEEEeCCCeEEEEECCC-cce-EEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEc
Q 001248 582 FDTTK-NRFLAAGDDFSIKFWDMDS-VQL-LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT 647 (1114)
Q Consensus 582 ~~~~~-~~l~~~~~dg~i~iwd~~~-~~~-~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~ 647 (1114)
|+|.- ..+++++..|...+-|..+ +.+ ......+.....+..+.+|++|+.++.|..+|.|.+|.-
T Consensus 273 f~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 273 FHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred hcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 33322 3578888899999988332 111 222222222335889999999999999999999999973
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00056 Score=77.61 Aligned_cols=187 Identities=13% Similarity=0.153 Sum_probs=123.1
Q ss_pred cceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCC
Q 001248 752 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 831 (1114)
Q Consensus 752 ~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~ 831 (1114)
..+++.+++ ++.++.++.+|.+++++.+.. .... + .|... .-+|.
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-----------------------~~~~-~---~~s~~------~~~Ge 84 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGN-----------------------PKTN-F---DHSSS------ILEGE 84 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCc-----------------------cccc-c---ccccc------ccCCc
Confidence 344445543 556888899999999875421 1000 0 02221 56899
Q ss_pred EEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecC----CCcEEEEEeCCCcEEEEEccc--ceEEEeecccccC
Q 001248 832 YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ----DNNIIAIGMDDSSIQIYNVRV--DEVKSKLKGHSKR 904 (1114)
Q Consensus 832 ~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~----d~~~la~g~~dg~v~iwd~~~--~~~~~~l~~h~~~ 904 (1114)
++++++ ||+|.|..+.+.+...++. ...++.+++++|+ ..+.+++|+.-| +.++.-.= .+.-..+..-.++
T Consensus 85 y~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~ 162 (846)
T KOG2066|consen 85 YVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGP 162 (846)
T ss_pred eEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccc
Confidence 999999 8999999998877766665 4567999999993 256888899888 77775331 1111245556789
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcC
Q 001248 905 ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETT 981 (1114)
Q Consensus 905 V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~ 981 (1114)
|.++.|. |+++|-++.+| |+|||+.+...... +..+............+.|.++.++ +.|-..+|+|..++
T Consensus 163 I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~--i~~p~~~~R~e~fpphl~W~~~~~L-VIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 163 IHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTN--IPPPSQSVRPELFPPHLHWQDEDRL-VIGWGDSVKICSIK 233 (846)
T ss_pred eEEEEec--CcEEEEecCCC-cEEEeccccceeec--cCCCCCCCCcccCCCceEecCCCeE-EEecCCeEEEEEEe
Confidence 9999995 88999999888 99999998654332 1111111111123356777777654 45555667777776
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0027 Score=70.49 Aligned_cols=268 Identities=14% Similarity=0.195 Sum_probs=139.4
Q ss_pred CceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeE-E-----e------------eeeeeccCCCCc------cccccc
Q 001248 360 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLV-L-----R------------NFKVWDLGACSM------PLQAAL 415 (1114)
Q Consensus 360 ~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~-~-----~------------~~~~~d~~~~~~------~~~~~~ 415 (1114)
.|+++.|+++..- |++|...|.|.||.+..++... . . +-++.|+..... -.+..+
T Consensus 3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 5899999999876 8999999999999987654432 0 0 112334332111 122234
Q ss_pred ccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeecc------ccCCeeEEEec-----CCC-CeeEEE
Q 001248 416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDA------HVGGVNDIAFS-----HPN-KQLCVI 483 (1114)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~------h~~~V~~v~~s-----~d~-~~~~l~ 483 (1114)
+....++|++++.| |=-++|+|+.+|.+.|.|++....+.. ..+.. ....|+++.|+ .|+ ..+.++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~-~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYN-ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEE-EEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEee-ccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 55668999999998 666999999999999999977665543 23333 33468888886 222 124688
Q ss_pred EecCCCCEEEEeCC-C--Ccce----eEeeccccCEEEEeeccCCC-------------------ceEEEEEecCCeEEE
Q 001248 484 TCGDDKTIKVWDAT-N--GAKQ----YIFEGHEAPVYSVCPHHKEN-------------------IQFIFSTALDGKIKA 537 (1114)
Q Consensus 484 s~~~d~~i~iwd~~-~--~~~~----~~~~~h~~~v~~~~~~~~~~-------------------~~~l~s~~~d~~i~~ 537 (1114)
.|...|.+.+|.+. . +... .....+.++|..++.-...+ -+-++....+..+++
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 88888999999775 1 2111 11124556666655221110 012444455777888
Q ss_pred EEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCC-
Q 001248 538 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG- 616 (1114)
Q Consensus 538 wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~- 616 (1114)
+...+.+...........+..+.+-+-- . ...+..|++...+|.|++|.+-.-+.+..+....
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~---------------~-~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~ 303 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTI---------------S-RNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPP 303 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-----------------EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS-
T ss_pred EeCCCCcccceeeccccccceEEEEeec---------------c-cCCceEEEEEECCCcEEEEECCCchHhhcccCCCc
Confidence 8776554443332111112222221100 0 1122358888899999999999988888776542
Q ss_pred -CCCCcCeEEEcCCCCEEEEEeCCCcEEEEEc
Q 001248 617 -GLPASPRIRFNKDGCLLAVSTNDNGIKILAT 647 (1114)
Q Consensus 617 -~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~ 647 (1114)
....+...+++++|..++-.+. ..+.++.+
T Consensus 304 ~d~~~~~~ssis~~Gdi~~~~gp-sE~~l~sv 334 (395)
T PF08596_consen 304 LDSRRLSSSSISRNGDIFYWTGP-SEIQLFSV 334 (395)
T ss_dssp --HHHHTT-EE-TTS-EEEE-SS-SEEEEEEE
T ss_pred cccccccccEECCCCCEEEEeCc-ccEEEEEE
Confidence 1123567788888887766544 34444443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.002 Score=71.80 Aligned_cols=97 Identities=13% Similarity=0.060 Sum_probs=56.4
Q ss_pred EEEEe-eCCCEEEEEe--CCe--EEEEEcCCCccccccCCCCCCeEE-EEEecCCCcEEEEEeCCC----cEEEEEcccc
Q 001248 823 CFALS-KNDSYVMSAS--GGK--ISLFNMMTFKTMATFMPPPPAATF-LAFHPQDNNIIAIGMDDS----SIQIYNVRVD 892 (1114)
Q Consensus 823 ~v~~s-~d~~~l~~~~--dg~--i~iwd~~~~~~~~~~~~~~~~i~~-l~~sp~d~~~la~g~~dg----~v~iwd~~~~ 892 (1114)
...+. +++..++..+ +|- |.+++..++. .+.+....-.|+. +.++++++.+..++..++ .|+.-++..+
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~ 317 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG 317 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC
Confidence 45554 6676666554 554 6666766554 3455555666754 778884455556666533 5555566623
Q ss_pred eEEEeecccccCeeEEEEcCCCCEEEEE
Q 001248 893 EVKSKLKGHSKRITGLAFSHALNVLVSS 920 (1114)
Q Consensus 893 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~ 920 (1114)
..+..+......-..+.|||++++++-.
T Consensus 318 ~~~~~LT~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 318 GEPKCLTCEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp TEEEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred CCeEeccCCCCCceEEEECCCCCEEEEE
Confidence 3445565444433689999999998754
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00084 Score=75.48 Aligned_cols=225 Identities=10% Similarity=0.107 Sum_probs=117.3
Q ss_pred cceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCC
Q 001248 752 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 831 (1114)
Q Consensus 752 ~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~ 831 (1114)
.....+.++|+|+.+++ +.+|...|+..... +. ...+.-..++|.+.++
T Consensus 33 ~~p~~ls~npngr~v~V-~g~geY~iyt~~~~----------------------r~--------k~~G~g~~~vw~~~n~ 81 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLV-CGDGEYEIYTALAW----------------------RN--------KAFGSGLSFVWSSRNR 81 (443)
T ss_dssp S--SEEEE-TTSSEEEE-EETTEEEEEETTTT----------------------EE--------EEEEE-SEEEE-TSSE
T ss_pred cCCeeEEECCCCCEEEE-EcCCEEEEEEccCC----------------------cc--------cccCceeEEEEecCcc
Confidence 34678999999997777 77777777752100 00 0223455688888666
Q ss_pred EEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEc
Q 001248 832 YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS 911 (1114)
Q Consensus 832 ~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s 911 (1114)
+.+.-..++|.|+.--.......+... ..+..+-. |.+|+..+.+ .|.+||..+++.+..+... +|..|.|+
T Consensus 82 yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~----G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws 153 (443)
T PF04053_consen 82 YAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG----GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWS 153 (443)
T ss_dssp EEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-
T ss_pred EEEEECCCeEEEEEcCccccceEEcCC-cccceEEc----CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEE
Confidence 555444888999743333333344322 12333322 6777777654 8999999999999998744 38999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCc------cccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCCce
Q 001248 912 HALNVLVSSGADSQLCVWSSDGWE------KQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC 985 (1114)
Q Consensus 912 ~d~~~l~s~s~D~~v~iwd~~~~~------~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~~ 985 (1114)
++|.++|-.+.+ ++.|++.+... ......+...... ...|.+.+|..| .++.+...+++- +..|+.
T Consensus 154 ~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~---~~~IkSg~W~~d--~fiYtT~~~lkY--l~~Ge~ 225 (443)
T PF04053_consen 154 DDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEI---SERIKSGCWVED--CFIYTTSNHLKY--LVNGET 225 (443)
T ss_dssp TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETT--EEEEE-TTEEEE--EETTEE
T ss_pred CCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEe---cceeEEEEEEcC--EEEEEcCCeEEE--EEcCCc
Confidence 999999998866 58888765420 0000011111110 136788888877 333333336665 333332
Q ss_pred --eeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCe
Q 001248 986 --VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1028 (1114)
Q Consensus 986 --~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~ 1028 (1114)
+..+ ..++.=+.+.+....++....|+.|..+.++...
T Consensus 226 ~~i~~l-----d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~~ 265 (443)
T PF04053_consen 226 GIIAHL-----DKPLYLLGYLPKENRLYLIDRDGNVISYELDLSE 265 (443)
T ss_dssp EEEEE------SS--EEEEEETTTTEEEEE-TT--EEEEE--HHH
T ss_pred ceEEEc-----CCceEEEEEEccCCEEEEEECCCCEEEEEECHHH
Confidence 2222 3466677777877788888888888888776443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >smart00668 CTLH C-terminal to LisH motif | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.4e-05 Score=61.78 Aligned_cols=52 Identities=31% Similarity=0.500 Sum_probs=42.5
Q ss_pred HHHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHHHHHHHHHHHhcCCH
Q 001248 38 MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDR 90 (1114)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lell~~~~~ 90 (1114)
+..++++|+.|+|+.|++.+........... ..+.|.|++|+|+||++.++.
T Consensus 5 ~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~-~~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 5 RKRIRELILKGDWDEALEWLSSLKPPLLERN-SKLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHhccC-CCchhHHHHHHHHHHHHcCCc
Confidence 6789999999999999999998844322222 259999999999999998764
|
Alpha-helical motif of unknown function. |
| >smart00667 LisH Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.8e-05 Score=53.31 Aligned_cols=32 Identities=38% Similarity=0.527 Sum_probs=29.7
Q ss_pred chHHHHHHHHHHHhhcCHHHHHHHHHHhcCCC
Q 001248 4 LSRELVFLILQFLDEEKFKETVHKLEQESGFF 35 (1114)
Q Consensus 4 ~~~~v~~li~q~L~~~g~~~s~~~l~~Esg~~ 35 (1114)
.++++.++|+|||...||.+|+++|++|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 36789999999999999999999999999974
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.11 Score=61.34 Aligned_cols=467 Identities=10% Similarity=0.075 Sum_probs=233.9
Q ss_pred CeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEee--ccccCEEEEeeccCCCce----EEEEEecCCeEEEEEc
Q 001248 467 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE--GHEAPVYSVCPHHKENIQ----FIFSTALDGKIKAWLY 540 (1114)
Q Consensus 467 ~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~----~l~s~~~d~~i~~wd~ 540 (1114)
.++..+.+.+.. .++.++.++.+...++..+. ++... .....|.|+.++|.++++ +++.|..+..+.+
T Consensus 489 ~~ti~~~~~n~s--qVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~--- 562 (1096)
T KOG1897|consen 489 KITIGVVSANAS--QVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMI--- 562 (1096)
T ss_pred ceEEEEEeecce--EEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEE---
Confidence 344444444555 35555556777777777665 22222 235778888888765544 4555544443332
Q ss_pred CCCCCeeeecCCCCeeEEEEEecCCCeEEeee-----cccceeEEEecCCCCEEEEEeCCCeEEEEEC--CCcceEEEec
Q 001248 541 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF-----RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM--DSVQLLTSID 613 (1114)
Q Consensus 541 ~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~ 613 (1114)
+.+.||........ -...+-..++-.+..+|+++..||.+..|.+ .+|..-..-+
T Consensus 563 ------------------l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk 624 (1096)
T KOG1897|consen 563 ------------------LTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKK 624 (1096)
T ss_pred ------------------EEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccc
Confidence 23333332111110 1123334455555778999999999887754 4444333332
Q ss_pred cCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhcccccccc
Q 001248 614 ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLAD 693 (1114)
Q Consensus 614 ~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1114)
.+-+..++.=-.|+..++.-+.+..|.-..+|..+.. -.+..+.-..-. ..+ .|..
T Consensus 625 ~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~k-Lv~spls~kev~-~~c------~f~s---------------- 680 (1096)
T KOG1897|consen 625 VTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGK-LVYSPLSLKEVN-HMC------PFNS---------------- 680 (1096)
T ss_pred cccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCc-EEEeccchHHhh-hhc------cccc----------------
Confidence 2333445555566665554444445555555543221 222111100000 000 0110
Q ss_pred ccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCc
Q 001248 694 RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNA 773 (1114)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg 773 (1114)
....-.+.....+.+++..++......... + |. ......+++.+....+.+.+.-.
T Consensus 681 ------------------~a~~d~l~~~~~~~l~i~tid~iqkl~irt-v--pl---~~~prrI~~q~~sl~~~v~s~r~ 736 (1096)
T KOG1897|consen 681 ------------------DAYPDSLASANGGALTIGTIDEIQKLHIRT-V--PL---GESPRRICYQESSLTFGVLSNRI 736 (1096)
T ss_pred ------------------ccCCceEEEecCCceEEEEecchhhcceee-e--cC---CCChhheEecccceEEEEEeccc
Confidence 111112222334567777666544332221 1 11 22344555555333333322211
Q ss_pred eEEEEeecccccCCCCCccccccccccCCCCCccccc-cCCCCCCCCCccEEEEeeC-CCEEEEEe-----------CCe
Q 001248 774 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN-DVTDSNPEEAVPCFALSKN-DSYVMSAS-----------GGK 840 (1114)
Q Consensus 774 ~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~-~~~~~~~~~~v~~v~~s~d-~~~l~~~~-----------dg~ 840 (1114)
.... +. .+.......++++|..+-+.+.. .+.....-..+.++.|..| +.++++|. .|.
T Consensus 737 e~~~------~~--~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GR 808 (1096)
T KOG1897|consen 737 ESSA------EY--YGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGR 808 (1096)
T ss_pred ccch------hh--cCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccce
Confidence 1000 00 00111111234455554443321 1111111223444457777 77888773 277
Q ss_pred EEEEEcCCCccccccCCC--CCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEE
Q 001248 841 ISLFNMMTFKTMATFMPP--PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLV 918 (1114)
Q Consensus 841 i~iwd~~~~~~~~~~~~~--~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~ 918 (1114)
|.+|....++.+.....+ .+.+.++..- +|++||. -+..|++|++.+.+.++.-..|...+..+...-.|..++
T Consensus 809 Iivfe~~e~~~L~~v~e~~v~Gav~aL~~f--ngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~ 884 (1096)
T KOG1897|consen 809 IIVFEFEELNSLELVAETVVKGAVYALVEF--NGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIA 884 (1096)
T ss_pred EEEEEEecCCceeeeeeeeeccceeehhhh--CCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEE
Confidence 899988774444333222 2344444332 5677764 467899999999877777778889999999999999999
Q ss_pred EEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCCc----------eeee
Q 001248 919 SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLE----------CVKQ 988 (1114)
Q Consensus 919 s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~----------~~~~ 988 (1114)
.|.--+.+.+.-....+-.-....+- .+. ...+++.+-.+..++.+-.+|.+.+-...+.. ....
T Consensus 885 VgDlm~Sitll~y~~~eg~f~evArD--~~p---~Wmtaveil~~d~ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~~ 959 (1096)
T KOG1897|consen 885 VGDLMRSITLLQYKGDEGNFEEVARD--YNP---NWMTAVEILDDDTYLGAENSGNLFTVRKDSDATTDEERQILEEVGK 959 (1096)
T ss_pred EeeccceEEEEEEeccCCceEEeehh--hCc---cceeeEEEecCceEEeecccccEEEEEecCCCCchhhhhcccceee
Confidence 99988888776655433111111111 111 35677777778787777666666654433210 0111
Q ss_pred eecC------CCCcCeeE--EEECCCCCEEEEEEcCCeEEEE
Q 001248 989 WVPR------ESSAPITH--ATFSCDSQLVYACFLDATVCVF 1022 (1114)
Q Consensus 989 ~~~~------~h~~~v~~--l~~s~dg~~l~s~s~Dg~I~vw 1022 (1114)
|..+ .|..-|.. -..+|-+..+..|..+|.|-+-
T Consensus 960 ~hlGelvn~f~hg~lv~~~~~s~~~~~~~vlfgTv~GsIG~i 1001 (1096)
T KOG1897|consen 960 FHLGELVNKFRHGSLVMQLGDSMIPLEPKVLFGTVNGSIGII 1001 (1096)
T ss_pred EEeccceeeeeecceEeeccccccCCCCcEEEEEccceEEEE
Confidence 1110 13333433 1334555557778888887664
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0022 Score=68.70 Aligned_cols=175 Identities=14% Similarity=0.177 Sum_probs=87.8
Q ss_pred CeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeC---CC-cEEEEEccc-ceEEEeeccccc--CeeEEEEc
Q 001248 839 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD---DS-SIQIYNVRV-DEVKSKLKGHSK--RITGLAFS 911 (1114)
Q Consensus 839 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~---dg-~v~iwd~~~-~~~~~~l~~h~~--~V~~l~~s 911 (1114)
..|.-.|+.+|+....+. ....+..+.|||.|..+|+.+-+ +. .-|||-+.+ +.....+..|.. .+..=-|.
T Consensus 168 ~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~ 246 (386)
T PF14583_consen 168 CRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWV 246 (386)
T ss_dssp EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-
T ss_pred ceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccccccccc
Confidence 345556677766543333 45567889999988888877543 22 236776654 444455544432 34445689
Q ss_pred CCCCEEEEEe-----CCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCC------------
Q 001248 912 HALNVLVSSG-----ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHET------------ 973 (1114)
Q Consensus 912 ~d~~~l~s~s-----~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~------------ 973 (1114)
|||..|.--+ .+..|.-+|+.+++... ..... ....+-.++||++++. +.|.
T Consensus 247 ~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~--~~~~p--------~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~ 316 (386)
T PF14583_consen 247 PDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR--LMEMP--------WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKI 316 (386)
T ss_dssp TTSS-EEEEEEETTT--EEEEEE-TTT--EEE--EEEE---------SEEEEEE-TTSSEEEEEE---------------
T ss_pred CCCCEEEEEeecCCCCceEEEeeCCCCCCceE--EEeCC--------ceeeeEEcCCCCEEEecCCCCCcccccccccee
Confidence 9998776432 24457777777754321 22221 2346667899999988 5542
Q ss_pred ----eEEEEEcCCCceeeeee------cCCCCcCe--eEEEECCCCCEEE-EEEcCCeEEEEEc
Q 001248 974 ----QLAIFETTKLECVKQWV------PRESSAPI--THATFSCDSQLVY-ACFLDATVCVFSA 1024 (1114)
Q Consensus 974 ----~i~iwd~~~~~~~~~~~------~~~h~~~v--~~l~~s~dg~~l~-s~s~Dg~I~vwd~ 1024 (1114)
.|.++++.++....... ...|...+ -...|||||++++ ++...|...||-+
T Consensus 317 ~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 317 ENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp ----EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred cCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 46678887766532211 11111112 3578999999865 5556777766643
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.045 Score=64.06 Aligned_cols=115 Identities=11% Similarity=0.019 Sum_probs=65.5
Q ss_pred EEEEecCCCCEEEEeCCCCcceeEeeccc-cCEEE---Eeec---cCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCC
Q 001248 481 CVITCGDDKTIKVWDATNGAKQYIFEGHE-APVYS---VCPH---HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG 553 (1114)
Q Consensus 481 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~-~~v~~---~~~~---~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 553 (1114)
.++.++.++.|.-.|..+|+.+.++.... ..+.. ..+. ..-.+..++.++.|+.+...|.++++.+.......
T Consensus 71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~ 150 (527)
T TIGR03075 71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKKNGD 150 (527)
T ss_pred EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeeccccc
Confidence 35666677889999999999887765311 11111 0000 00012467778889999999999888776544321
Q ss_pred Cee-EEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEe------CCCeEEEEECCCcceEEEecc
Q 001248 554 RWC-TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG------DDFSIKFWDMDSVQLLTSIDA 614 (1114)
Q Consensus 554 ~~v-~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~ 614 (1114)
... ..+.-+| .+ .+..++.+. .+|.|..+|.++|+.+..+..
T Consensus 151 ~~~~~~~tssP---------------~v----~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 151 YKAGYTITAAP---------------LV----VKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred ccccccccCCc---------------EE----ECCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 100 0000000 00 012344443 368999999999998877643
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.002 Score=66.17 Aligned_cols=216 Identities=10% Similarity=0.075 Sum_probs=116.1
Q ss_pred ccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeeccc-ccCeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001248 854 TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH-SKRITGLAFSHALNVLVSSGADSQLCVWSSD 932 (1114)
Q Consensus 854 ~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h-~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~ 932 (1114)
.+.+-...+..++|+|+++.++|+....+.|..++. +|+.+..+.-. .+..-+|++..++.++++--.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 345556679999999966889999999999999996 47777665332 2457789998888777776678999999985
Q ss_pred CCccc--ccc--ccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCeEEEEEcCC---Cceeeee-----e-cCCCCcCe
Q 001248 933 GWEKQ--KNR--FLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK---LECVKQW-----V-PRESSAPI 998 (1114)
Q Consensus 933 ~~~~~--~~~--~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~i~iwd~~~---~~~~~~~-----~-~~~h~~~v 998 (1114)
..... ... .+... -..........++|.+.++.|.++ ...-..+|.+.. ...+... . .......+
T Consensus 95 ~~~~~~~~~~~~~~~l~-~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLG-FPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ---TT--EEEEEEEE----S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred ccccccchhhceEEecc-cccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 43211 111 11111 111122457999999987777665 333455665543 1111111 0 11234568
Q ss_pred eEEEECCCCC-EEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEE
Q 001248 999 THATFSCDSQ-LVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1075 (1114)
Q Consensus 999 ~~l~~s~dg~-~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW 1075 (1114)
.++++.|... +++.......|.++| .+|+.+..+......+ |-....-.+-.|+|.+ +|+ |...++-+..+++
T Consensus 174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~-gl~~~~~QpEGIa~d~-~G~-LYIvsEpNlfy~f 247 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFH-GLSKDIPQPEGIAFDP-DGN-LYIVSEPNLFYRF 247 (248)
T ss_dssp -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGG-G-SS---SEEEEEE-T-T---EEEEETTTEEEEE
T ss_pred cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCccc-CcccccCCccEEEECC-CCC-EEEEcCCceEEEe
Confidence 8999988654 556666778899999 7788777665222111 0001113355799998 564 5555666666554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.028 Score=65.67 Aligned_cols=149 Identities=13% Similarity=0.102 Sum_probs=88.1
Q ss_pred cEEEEEcccceEEEeecccccCeeE---------EEEcCCCC---EEEEEeCCCcEEEEeCCCCcccccccc--------
Q 001248 883 SIQIYNVRVDEVKSKLKGHSKRITG---------LAFSHALN---VLVSSGADSQLCVWSSDGWEKQKNRFL-------- 942 (1114)
Q Consensus 883 ~v~iwd~~~~~~~~~l~~h~~~V~~---------l~~s~d~~---~l~s~s~D~~v~iwd~~~~~~~~~~~~-------- 942 (1114)
.|.-.|++||+....++.....+.. +....+|+ .++.++.+|.+.+.|-.+++.......
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~ 351 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWAT 351 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccc
Confidence 5677788999988777652222221 22224665 788999999999999998876311000
Q ss_pred --ccCCCCC--------------------C-CCCC--ceEEEEccCCcEEEE-EeC------------------------
Q 001248 943 --QIPTGRT--------------------P-TAQS--DTRVQFHQDQIHFLV-VHE------------------------ 972 (1114)
Q Consensus 943 --~~~~~~~--------------------~-~~~~--i~~v~fspdg~~l~~-~~d------------------------ 972 (1114)
....+.. + ..+. =..++++|+..++.+ ..+
T Consensus 352 ~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~ 431 (527)
T TIGR03075 352 GVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLT 431 (527)
T ss_pred ccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccc
Confidence 0000000 0 0000 023566776665554 222
Q ss_pred ---------CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeC
Q 001248 973 ---------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 973 ---------~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
+.|.-+|+.+++..-...... ....+. +.-.+.+++.++.||.++.+|..||+.+.+++
T Consensus 432 ~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~--p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~ 499 (527)
T TIGR03075 432 IKPPPDDHMGSLIAWDPITGKIVWEHKEDF--PLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFK 499 (527)
T ss_pred cCCCCCCCceeEEEEeCCCCceeeEecCCC--CCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEe
Confidence 357778888887766544211 111111 12255577778889999999999999998887
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00023 Score=78.52 Aligned_cols=129 Identities=11% Similarity=0.094 Sum_probs=92.5
Q ss_pred cceeEeccCCCCceEEEEcCCCCeEEEEE----ecCCc----EEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCC
Q 001248 349 KTVTRTLNQGSSPMSMDFHPVQQTLLLVG----TNVGD----IGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 420 (1114)
Q Consensus 349 ~~~~~~~~h~~~v~~v~~spdg~~ll~tg----~~dg~----v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~ 420 (1114)
-+++.....+....++.||-...+.+.|- +.+|. -.+|++..++... ..+ +--...
T Consensus 196 lEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqr-vsv---------------tsipL~ 259 (545)
T PF11768_consen 196 LEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQR-VSV---------------TSIPLP 259 (545)
T ss_pred EEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeE-EEE---------------EEEecC
Confidence 34555556667778999998655545543 22443 4567776544322 111 122456
Q ss_pred CCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCc
Q 001248 421 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA 500 (1114)
Q Consensus 421 ~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 500 (1114)
..|.|++++|+.+.|+.|+.||+|++||...+... +..+.-..+.++|.|+|. ++++|+..|.+.+||+.-.-
T Consensus 260 s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-----~~ka~~~P~~iaWHp~ga--i~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 260 SQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-----LAKAEFIPTLIAWHPDGA--IFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred CcceEEecCcccceEEEEecCCeEEEEEcCCCeee-----eeeecccceEEEEcCCCc--EEEEEcCCceEEEEEeecCc
Confidence 68999999999999999999999999999876432 223445678999999999 89999999999999987443
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0082 Score=67.78 Aligned_cols=199 Identities=15% Similarity=0.126 Sum_probs=107.8
Q ss_pred EEEeeCCCEEEEEeCC------------eEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc
Q 001248 824 FALSKNDSYVMSASGG------------KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 891 (1114)
Q Consensus 824 v~~s~d~~~l~~~~dg------------~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~ 891 (1114)
++.+|.|--+|...|. .|+||+.. |+.+..+.-..+.+.++.|+. +. .|++-..||.+++||+..
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~e-~LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-DE-ELVVVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECC-CC-eEEEEEcCCEEEEEeCCC
Confidence 4555555555555433 59999874 556655433337899999987 54 455667899999999863
Q ss_pred ce------EEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccccccc-ccCCCCC--CCCCCceE-EEEc
Q 001248 892 DE------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFL-QIPTGRT--PTAQSDTR-VQFH 961 (1114)
Q Consensus 892 ~~------~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-~~~~~~~--~~~~~i~~-v~fs 961 (1114)
.. .+....-....+....+..+| +|.-..++.+.+.+-..... ....+ ..+.... ........ ..++
T Consensus 111 ~~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~-~~~~~~~~p~~~~~~~~~~~~~~i~~l~ 187 (410)
T PF04841_consen 111 EFQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPV-KLRRLPEIPGLWTKFHWWPSWTVIPLLS 187 (410)
T ss_pred ceeechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCccccc-hhhccccCCCcccccccccccccceEee
Confidence 22 111112222333333444455 33333444443332221110 10111 1111000 00001111 3455
Q ss_pred cCCcEEEE-EeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeC
Q 001248 962 QDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 962 pdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
.+....+. +.++.+.+.+....+. + ...+++..|++||+|++||.-..+|.+.|...+-.+.++.+.
T Consensus 188 ~~~~~~i~~~~g~~i~~i~~~~~~~---i---~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~ 255 (410)
T PF04841_consen 188 SDRVVEILLANGETIYIIDENSFKQ---I---DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD 255 (410)
T ss_pred cCcceEEEEecCCEEEEEEcccccc---c---cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence 55554444 4555566444332211 1 124689999999999999999999999999877777776665
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0073 Score=67.80 Aligned_cols=205 Identities=13% Similarity=0.143 Sum_probs=144.8
Q ss_pred ccEEEEeeCCCEEEEEe--CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeC---CCcEEEEEcccceEE
Q 001248 821 VPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD---DSSIQIYNVRVDEVK 895 (1114)
Q Consensus 821 v~~v~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~---dg~v~iwd~~~~~~~ 895 (1114)
...+++++++..+.... ++.|.+.|..+........... ....++++| +++.+.++.. ++++.+.|..+++.+
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 45678888888665554 6899999987766665554322 677899999 6655554444 689999999998888
Q ss_pred EeecccccCeeEEEEcCCCCEEEEEe-CCCcEEEEeCCCCcccc-ccccccCCCCCCCCCCceEEEEccCCcEEEEE--e
Q 001248 896 SKLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQK-NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--H 971 (1114)
Q Consensus 896 ~~l~~h~~~V~~l~~s~d~~~l~s~s-~D~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~--~ 971 (1114)
.....-..+ ..++++|+|..+..+. .+++|.+.|..+..... ........+ .....+.++|+|.++.+. .
T Consensus 154 ~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-----~~P~~i~v~~~g~~~yV~~~~ 227 (381)
T COG3391 154 ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-----TGPAGIAVDPDGNRVYVANDG 227 (381)
T ss_pred EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccC-----CCCceEEECCCCCEEEEEecc
Confidence 775433344 8899999999665554 78899999977744321 000001111 244789999999987774 2
Q ss_pred C--CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcC-CeEEEEEcCCCeeeEEeC
Q 001248 972 E--TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-ATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 972 d--~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D-g~I~vwd~~~~~~~~~~~ 1034 (1114)
+ +.+...|..++.....-...+-. ....+.++|+|+++.+.... +.+.+-|..+......+.
T Consensus 228 ~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 228 SGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred CCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 2 58889999888777652222223 56778999999999887544 889999999988887665
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.018 Score=59.27 Aligned_cols=187 Identities=9% Similarity=0.105 Sum_probs=103.4
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
-...+..++|.|+...|+++....+.|...+.+ |+.+.+.. +.+ -+..-.|++..++.+++
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~-----------------l~g-~~D~EgI~y~g~~~~vl 80 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIP-----------------LDG-FGDYEGITYLGNGRYVL 80 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE------------------SS--SSEEEEEE-STTEEEE
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEe-----------------CCC-CCCceeEEEECCCEEEE
Confidence 455699999999988888888888999888874 67665432 233 23677889988888888
Q ss_pred EEeCCCeEEEEEccCCce---ee--eeEeec---cccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCC---CcceeEe
Q 001248 437 VAYSRHIVQIYSYHGGDE---VR--QHLEID---AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN---GAKQYIF 505 (1114)
Q Consensus 437 s~~~dg~i~iwd~~~~~~---~~--~~~~l~---~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~---~~~~~~~ 505 (1114)
+--.++.+.++++..... .. +...+. .++..+-.++|.+.++. |+.+-...-..++.+.. +..+...
T Consensus 81 ~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~~~~~~ 158 (248)
T PF06977_consen 81 SEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGFDLFVS 158 (248)
T ss_dssp EETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS--EEE
T ss_pred EEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCccceeec
Confidence 766689999999843221 11 111221 35567999999999885 34445555556665543 2221111
Q ss_pred --------eccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCC---------CeeEEEEEecCCC
Q 001248 506 --------EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG---------RWCTTMAYSADGT 566 (1114)
Q Consensus 506 --------~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~---------~~v~~~~~s~~g~ 566 (1114)
......+.++++++. .+++++....++.|..+|. .++....+.... .+...+++.++|+
T Consensus 159 ~~~~~~~~~~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d~-~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~ 234 (248)
T PF06977_consen 159 DDQDLDDDKLFVRDLSGLSYDPR-TGHLLILSDESRLLLELDR-QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN 234 (248)
T ss_dssp E-HHHH-HT--SS---EEEEETT-TTEEEEEETTTTEEEEE-T-T--EEEEEE-STTGGG-SS---SEEEEEE-TT--
T ss_pred cccccccccceeccccceEEcCC-CCeEEEEECCCCeEEEECC-CCCEEEEEEeCCcccCcccccCCccEEEECCCCC
Confidence 123355778888765 4577888888888888883 334333332222 2455666666665
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0038 Score=70.25 Aligned_cols=221 Identities=16% Similarity=0.157 Sum_probs=118.0
Q ss_pred CCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEe
Q 001248 818 EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 897 (1114)
Q Consensus 818 ~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~ 897 (1114)
...+..+.++|+|++++++++|...|+......... .+.-...+|.+ +++ +|+-..+++|.|+.--+.+....
T Consensus 32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKA-----FGSGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEE-----EEE-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT--
T ss_pred CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccc-----cCceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccceE
Confidence 344788999999999999989999999843322211 23456688988 555 66666688999974333333233
Q ss_pred ecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEE
Q 001248 898 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAI 977 (1114)
Q Consensus 898 l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~i 977 (1114)
++.. ..+..|-. |.+|...+.+ .|.+||+++++... .... ..|..+.|+++|.+++...+..+.|
T Consensus 105 i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~-----~i~v-----~~vk~V~Ws~~g~~val~t~~~i~i 169 (443)
T PF04053_consen 105 IKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIR-----RIDV-----SAVKYVIWSDDGELVALVTKDSIYI 169 (443)
T ss_dssp ---S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEE-----EESS------E-EEEEE-TTSSEEEEE-S-SEEE
T ss_pred EcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceee-----EEec-----CCCcEEEEECCCCEEEEEeCCeEEE
Confidence 3321 12333433 8888877655 79999999865422 2211 1478999999999999987888888
Q ss_pred EEcCCC-----------ceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCee--eEEeCCCcccCCCCC
Q 001248 978 FETTKL-----------ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL--RCRINPSAYLPAGVS 1044 (1114)
Q Consensus 978 wd~~~~-----------~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~--~~~~~~~~~~~~~~~ 1044 (1114)
++.... ..+.... .-...|.+.+|..| .++-.+.. .++. +-.|+. ++.+.
T Consensus 170 l~~~~~~~~~~~~~g~e~~f~~~~--E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld---------- 232 (443)
T PF04053_consen 170 LKYNLEAVAAIPEEGVEDAFELIH--EISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLD---------- 232 (443)
T ss_dssp EEE-HHHHHHBTTTB-GGGEEEEE--EE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-S----------
T ss_pred EEecchhcccccccCchhceEEEE--EecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcC----------
Confidence 775433 0111111 11457888899766 44334334 6665 334432 32222
Q ss_pred CCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1045 SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1045 ~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
..++ -+.+.+ +.+.+.....|+.|..+.+...+
T Consensus 233 -~~~y--llgy~~-~~~~ly~~Dr~~~v~~~~ld~~~ 265 (443)
T PF04053_consen 233 -KPLY--LLGYLP-KENRLYLIDRDGNVISYELDLSE 265 (443)
T ss_dssp -S--E--EEEEET-TTTEEEEE-TT--EEEEE--HHH
T ss_pred -CceE--EEEEEc-cCCEEEEEECCCCEEEEEECHHH
Confidence 1244 455566 34788889999999988876543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.013 Score=65.19 Aligned_cols=113 Identities=14% Similarity=0.174 Sum_probs=79.4
Q ss_pred ceEEEEcc-CCcEEEE-----EeCC----eEEEEEcCCCceee--eeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEE
Q 001248 955 DTRVQFHQ-DQIHFLV-----VHET----QLAIFETTKLECVK--QWVPRESSAPITHATFSCDSQLVYACFLDATVCVF 1022 (1114)
Q Consensus 955 i~~v~fsp-dg~~l~~-----~~d~----~i~iwd~~~~~~~~--~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vw 1022 (1114)
...+.||- ++..+.+ +.+| .-++|+....+.-+ .... .....|.+.+++|+...|+.|+.||+|.+|
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSIILY 286 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeEEEE
Confidence 35667765 3344433 1233 24567766543322 1111 347789999999999999999999999999
Q ss_pred EcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1023 SAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1023 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
|...+..... . ....|..++|+| +|.++++|+.-|.+.+||+.-..
T Consensus 287 D~~~~~t~~~-k-----------a~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 287 DTTRGVTLLA-K-----------AEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EcCCCeeeee-e-----------ecccceEEEEcC-CCcEEEEEcCCceEEEEEeecCc
Confidence 9877743322 1 115566899999 68999999999999999997665
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.002 Score=72.36 Aligned_cols=164 Identities=16% Similarity=0.163 Sum_probs=97.7
Q ss_pred Eecc-CCCCceEEEEcCCCCeEEEEEecC---CcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEE
Q 001248 353 RTLN-QGSSPMSMDFHPVQQTLLLVGTNV---GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 428 (1114)
Q Consensus 353 ~~~~-h~~~v~~v~~spdg~~ll~tg~~d---g~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 428 (1114)
+.+. -...+..-+|+|+++.+....-.. ..+.++|+++++.....+ + .+.-..-+|
T Consensus 186 ~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-----------------~---~g~~~~P~f 245 (425)
T COG0823 186 QKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-----------------F---NGNNGAPAF 245 (425)
T ss_pred eEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-----------------c---CCccCCccC
Confidence 3444 556778899999999744442222 359999999887665321 1 223445789
Q ss_pred cCCCCeEEEEe-CCCe--EEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCC--EEEEeCCCCccee
Q 001248 429 SPDGSLFGVAY-SRHI--VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT--IKVWDATNGAKQY 503 (1114)
Q Consensus 429 spdg~~las~~-~dg~--i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~--i~iwd~~~~~~~~ 503 (1114)
||||++||.+. .||. |.+.|+.++...+ +..-.+.-..-.|+|||+. ++++.+..|. |.+.|++.+.. .
T Consensus 246 spDG~~l~f~~~rdg~~~iy~~dl~~~~~~~----Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I~~~~~~g~~~-~ 319 (425)
T COG0823 246 SPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR----LTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQIYLYDLEGSQV-T 319 (425)
T ss_pred CCCCCEEEEEECCCCCccEEEEcCCCCccee----cccCCccccCccCCCCCCE-EEEEeCCCCCcceEEECCCCCce-e
Confidence 99999988764 4555 5666777665222 3333333347899999997 3445555565 66666665544 3
Q ss_pred EeeccccCEEEEeeccCCCceEEEEEecC-Ce--EEEEEcCCCC
Q 001248 504 IFEGHEAPVYSVCPHHKENIQFIFSTALD-GK--IKAWLYDNLG 544 (1114)
Q Consensus 504 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-~~--i~~wd~~~~~ 544 (1114)
.+....+.-..-. .++||++++..+.. |. |.+.|+.+..
T Consensus 320 riT~~~~~~~~p~--~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 320 RLTFSGGGNSNPV--WSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred EeeccCCCCcCcc--CCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 3332222222333 35667777777643 43 5555554443
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.028 Score=60.48 Aligned_cols=287 Identities=15% Similarity=0.096 Sum_probs=133.8
Q ss_pred EEccCcceeeeccc-CceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEE
Q 001248 758 IFTNSGNAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA 836 (1114)
Q Consensus 758 ~~s~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~ 836 (1114)
+|.++|+.|+.++. +|.-.+|-+ |+.+++..+. +.. .........++++.+.++..
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~l--------------------DL~t~~i~QL--Tdg-~g~~~~g~~~s~~~~~~~Yv 98 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLL--------------------DLATGEITQL--TDG-PGDNTFGGFLSPDDRALYYV 98 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEE--------------------ETTT-EEEE-----S-S-B-TTT-EE-TTSSEEEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEE--------------------EcccCEEEEC--ccC-CCCCccceEEecCCCeEEEE
Confidence 56788877666555 554444432 3334444332 110 11222346677888888766
Q ss_pred e-CCeEEEEEcCCCccccccCCCCCCeEEEEEec-CCCcEEEEEe---C-------------------CCcEEEEEcccc
Q 001248 837 S-GGKISLFNMMTFKTMATFMPPPPAATFLAFHP-QDNNIIAIGM---D-------------------DSSIQIYNVRVD 892 (1114)
Q Consensus 837 ~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp-~d~~~la~g~---~-------------------dg~v~iwd~~~~ 892 (1114)
. +..|+-.|+.+.+....+......+-...|.. .|+..++-.- . ...|.-.|+.+|
T Consensus 99 ~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG 178 (386)
T PF14583_consen 99 KNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG 178 (386)
T ss_dssp ETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT-
T ss_pred ECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC
Confidence 5 67899999999876655555555554455542 1455543221 1 123555677777
Q ss_pred eEEEeecccccCeeEEEEcCCCCEEEEEeC----CCc-EEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEE
Q 001248 893 EVKSKLKGHSKRITGLAFSHALNVLVSSGA----DSQ-LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 967 (1114)
Q Consensus 893 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~----D~~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l 967 (1114)
+....+. -..-+..+.|||....++.=+. |.. -+||-+++.......+..... .-.+..=-|.|||..|
T Consensus 179 ~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~-----~e~~gHEfw~~DG~~i 252 (386)
T PF14583_consen 179 ERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRME-----GESVGHEFWVPDGSTI 252 (386)
T ss_dssp -EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---T-----TEEEEEEEE-TTSS-E
T ss_pred ceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCC-----CcccccccccCCCCEE
Confidence 6544443 3455678899996655554333 332 366766543222211111111 1245566899999988
Q ss_pred EE-Ee-----CCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCC----------------eEEEEEcC
Q 001248 968 LV-VH-----ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA----------------TVCVFSAA 1025 (1114)
Q Consensus 968 ~~-~~-----d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg----------------~I~vwd~~ 1025 (1114)
.. +. +..|.-+|..+++...... ..+-..+..++||++++-=+.|. .|+++++.
T Consensus 253 ~y~~~~~~~~~~~i~~~d~~t~~~~~~~~----~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~ 328 (386)
T PF14583_consen 253 WYDSYTPGGQDFWIAGYDPDTGERRRLME----MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVE 328 (386)
T ss_dssp EEEEEETTT--EEEEEE-TTT--EEEEEE----E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETT
T ss_pred EEEeecCCCCceEEEeeCCCCCCceEEEe----CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccc
Confidence 77 32 3357778888886643322 22455677789999887433332 57778888
Q ss_pred CCeeeE--EeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccC
Q 001248 1026 NLKLRC--RINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1026 ~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~ 1079 (1114)
.++... +...+-..-.++ .. +.=-...|+|++..+|.+....|...|+-+.-
T Consensus 329 ~~~~~~l~~h~~sw~v~~~~-~q-~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~i 382 (386)
T PF14583_consen 329 AGRFRKLARHDTSWKVLDGD-RQ-VTHPHPSFSPDGKWVLFRSDMEGPPAVYLVEI 382 (386)
T ss_dssp TTEEEEEEE-------BTTB-SS-TT----EE-TTSSEEEEEE-TTSS-EEEEEE-
T ss_pred cCceeeeeeccCcceeecCC-Cc-cCCCCCccCCCCCEEEEECCCCCCccEEEEeC
Confidence 777542 211000001111 11 11124889995444566777778777765543
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.60 E-value=7.8e-05 Score=81.88 Aligned_cols=253 Identities=15% Similarity=0.177 Sum_probs=153.6
Q ss_pred CCCccEEEEeeCCC--EEEEEe-CCeEEEEEcCCCccc--cccCCCCCCeEEEEEecCCCcEEEEEe----CCCcEEEEE
Q 001248 818 EEAVPCFALSKNDS--YVMSAS-GGKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGM----DDSSIQIYN 888 (1114)
Q Consensus 818 ~~~v~~v~~s~d~~--~l~~~~-dg~i~iwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~la~g~----~dg~v~iwd 888 (1114)
...+.|++...+.+ .+++|. +|.|.+-......-- ...+++...+++++|++-|.++||+|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 34466666654443 667777 799888877643222 234567788999999998888999885 456899999
Q ss_pred cccc--eE--EEeecc-cccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEcc-
Q 001248 889 VRVD--EV--KSKLKG-HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ- 962 (1114)
Q Consensus 889 ~~~~--~~--~~~l~~-h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fsp- 962 (1114)
+.++ -+ -..|.+ -.....+++|-.|.+++.+|...+.+.++|+........ .++. ..+..+...|
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~-svnT--------k~vqG~tVdp~ 206 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVS-SVNT--------KYVQGITVDPF 206 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhh-hhhh--------hhcccceecCC
Confidence 9876 11 122322 334566899999999999999999999999874211111 1111 1456788888
Q ss_pred CCcEEEEEeCCeEEEEEc-CCCce-eeeeecCC--CCcCeeEEEECCCCC-EEEEEEcC-CeEEEEEcCCC------eee
Q 001248 963 DQIHFLVVHETQLAIFET-TKLEC-VKQWVPRE--SSAPITHATFSCDSQ-LVYACFLD-ATVCVFSAANL------KLR 1030 (1114)
Q Consensus 963 dg~~l~~~~d~~i~iwd~-~~~~~-~~~~~~~~--h~~~v~~l~~s~dg~-~l~s~s~D-g~I~vwd~~~~------~~~ 1030 (1114)
.+.|++...|+.|.+||. .+-+- +.++.... -...+..++|+|-.. .|++.+.| ++|+.+|+..- +..
T Consensus 207 ~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~ 286 (783)
T KOG1008|consen 207 SPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNS 286 (783)
T ss_pred CCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCccccccc
Confidence 889999988999999993 33222 22221111 123489999999543 35555544 78999987421 111
Q ss_pred EEeCCCcccCCCCCC--CCccceEEEecCCC-CCeEEEEeCCCcEEEEeccCCC
Q 001248 1031 CRINPSAYLPAGVSS--SNVHPLVIAAHPQE-PNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1031 ~~~~~~~~~~~~~~~--~~v~~~~~~~~~~d-~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
..+......+-.|.+ ..|. ...||+.+ -+..+++-..-++.-+++.+.-
T Consensus 287 ~~~~~~s~~~~q~~~~~s~I~--~f~wH~~s~~er~il~~~nl~~~Df~V~e~~ 338 (783)
T KOG1008|consen 287 VFVNYESKYPVQPNSQCSGID--FFTWHTASPTERQILGVINLQPKDFSVHEEV 338 (783)
T ss_pred ceeeeccccccccccccccee--ecCcCcCCccceeEEeeccCChhhccchhhe
Confidence 111111111112222 2244 66777654 2345555555666666665543
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.14 Score=58.04 Aligned_cols=136 Identities=18% Similarity=0.237 Sum_probs=78.2
Q ss_pred EEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeeccc-c
Q 001248 825 ALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH-S 902 (1114)
Q Consensus 825 ~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h-~ 902 (1114)
.++.+....+... ++.+.+.+....+. +. ..+++..+++|| ++++||.-..+|.+.+.+..-.+.+..+... .
T Consensus 185 ~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~ 259 (410)
T PF04841_consen 185 LLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSP-NGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSK 259 (410)
T ss_pred EeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECC-CCCEEEEEECCCCEEEEECcccceeEEeecCcC
Confidence 3455555555544 56677555433222 22 246899999999 9999999999999999886655556555443 3
Q ss_pred cCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCC
Q 001248 903 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTK 982 (1114)
Q Consensus 903 ~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~ 982 (1114)
.....+.|.-+...++.- ...|.+..... ..+.|.-++..++...-..++|+....
T Consensus 260 ~~p~~~~WCG~dav~l~~--~~~l~lvg~~~----------------------~~~~~~~~~~~~l~~E~DG~riit~~~ 315 (410)
T PF04841_consen 260 SPPKQMAWCGNDAVVLSW--EDELLLVGPDG----------------------DSISFWYDGPVILVSEIDGVRIITSTS 315 (410)
T ss_pred CCCcEEEEECCCcEEEEe--CCEEEEECCCC----------------------CceEEeccCceEEeccCCceEEEeCCc
Confidence 455677776443222222 23344443221 224444445444444444477776665
Q ss_pred Cceeeee
Q 001248 983 LECVKQW 989 (1114)
Q Consensus 983 ~~~~~~~ 989 (1114)
.+.++..
T Consensus 316 ~~~l~~V 322 (410)
T PF04841_consen 316 HEFLQRV 322 (410)
T ss_pred eEEEEEC
Confidence 5554443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0074 Score=71.66 Aligned_cols=150 Identities=14% Similarity=0.166 Sum_probs=95.2
Q ss_pred CCeeEEEEecCCCCEEEEeCCCCcceeEeeccccC-EEEEeeccC---CCceEEEEEecCCeEEEEEcCCCCCe-eeecC
Q 001248 477 NKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP-VYSVCPHHK---ENIQFIFSTALDGKIKAWLYDNLGSR-VDYEA 551 (1114)
Q Consensus 477 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~-v~~~~~~~~---~~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~ 551 (1114)
++.++|........|+-.|++.|+.+..+..|... |..++-... -+....+.|-.++.+..||.+-.+.. ..-..
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 33334555566788999999999999999887754 777652211 01235677778889999999864321 11001
Q ss_pred CCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCC
Q 001248 552 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC 631 (1114)
Q Consensus 552 ~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~ 631 (1114)
+. + .....+.|++-+.+| ++++|+.+|.||+||--..+....+++-+ .+|..+..+.||+
T Consensus 572 k~---------------Y--~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG--~pI~~iDvt~DGk 631 (794)
T PF08553_consen 572 KQ---------------Y--SSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLG--DPIIGIDVTADGK 631 (794)
T ss_pred cc---------------c--ccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCC--CCeeEEEecCCCc
Confidence 00 0 111233344333333 49999999999999953333233333333 4899999999999
Q ss_pred EEEEEeCCCcEEEEEc
Q 001248 632 LLAVSTNDNGIKILAT 647 (1114)
Q Consensus 632 ~l~~~~~dg~i~iwd~ 647 (1114)
++++.+. ..+.+++.
T Consensus 632 wilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 632 WILATCK-TYLLLIDT 646 (794)
T ss_pred EEEEeec-ceEEEEEE
Confidence 9887665 56777765
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.53 E-value=3.8e-05 Score=84.18 Aligned_cols=204 Identities=15% Similarity=0.241 Sum_probs=126.2
Q ss_pred CCCCceEEEEcCCCC-eEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC-CCCe
Q 001248 357 QGSSPMSMDFHPVQQ-TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSL 434 (1114)
Q Consensus 357 h~~~v~~v~~spdg~-~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~ 434 (1114)
....+.|++++-+.+ .|++.|..+|.|.+-.+....-. ...+..+|....++++|++ |...
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~ 117 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNH 117 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHH
Confidence 445677887766544 58999999999999887543221 1124567888999999999 7788
Q ss_pred EEEEe----CCCeEEEEEccCCc--eeeeeEeec-cccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCc-ceeEee
Q 001248 435 FGVAY----SRHIVQIYSYHGGD--EVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFE 506 (1114)
Q Consensus 435 las~~----~dg~i~iwd~~~~~--~~~~~~~l~-~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~ 506 (1114)
||+|- .|..+.|||+.++- ..... .+. +-.....+++|..+.+ ++.+|...+.+.++|++... ....+
T Consensus 118 LAagldkhrnds~~~Iwdi~s~ltvPke~~-~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~sv- 193 (783)
T KOG1008|consen 118 LAAGLDKHRNDSSLKIWDINSLLTVPKESP-LFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSV- 193 (783)
T ss_pred HHhhhhhhcccCCccceecccccCCCcccc-ccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhh-
Confidence 88873 35679999998862 11111 122 2344567899998877 78899888899999987322 11111
Q ss_pred ccccCEEEEeeccCCCceEEEEEecCCeEEEEE-cCCCCCeeeecCC-----CCeeEEEEEecCCCeEEeeecccceeEE
Q 001248 507 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL-YDNLGSRVDYEAP-----GRWCTTMAYSADGTRTYQGFRKRSLGVV 580 (1114)
Q Consensus 507 ~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd-~~~~~~~~~~~~~-----~~~v~~~~~s~~g~~~~~~~~~~~v~~~ 580 (1114)
.+..+..+.+.|- .++++++-. ||.|.+|| ....+.......+ ...+..++|.|...
T Consensus 194 -nTk~vqG~tVdp~-~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrt-------------- 256 (783)
T KOG1008|consen 194 -NTKYVQGITVDPF-SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRT-------------- 256 (783)
T ss_pred -hhhhcccceecCC-CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCc--------------
Confidence 1223344444341 224666655 99999999 4443333211111 12355666665432
Q ss_pred EecCCCCEEEEE-eCCCeEEEEECC
Q 001248 581 QFDTTKNRFLAA-GDDFSIKFWDMD 604 (1114)
Q Consensus 581 ~~~~~~~~l~~~-~~dg~i~iwd~~ 604 (1114)
..+++. -..++|+.+++.
T Consensus 257 ------glla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 257 ------GLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ------chhhhhccCcceEEEeccc
Confidence 123333 356788888874
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.091 Score=59.07 Aligned_cols=241 Identities=16% Similarity=0.162 Sum_probs=156.9
Q ss_pred CccEEEEeeCCCEEEEEe--CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEe
Q 001248 820 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 897 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~ 897 (1114)
....+.+.+++..+.... .+.+...+................-..+++++...+..+....+..|.+.|..+.+.+..
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 456678888886655554 334555555422111112211134567788884445677776779999999877766655
Q ss_pred ecccccCeeEEEEcCCCCEEEEEeC---CCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE--eC
Q 001248 898 LKGHSKRITGLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE 972 (1114)
Q Consensus 898 l~~h~~~V~~l~~s~d~~~l~s~s~---D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~--~d 972 (1114)
..--. .-..++++++++.+..+.. ++++.+.|-.++..... .+.+.. ...++++|+|..+.+. .+
T Consensus 112 ~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~----~~vG~~-----P~~~a~~p~g~~vyv~~~~~ 181 (381)
T COG3391 112 IPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT----IPVGNT-----PTGVAVDPDGNKVYVTNSDD 181 (381)
T ss_pred eeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE----EecCCC-----cceEEECCCCCeEEEEecCC
Confidence 43222 4568999999987776655 67788888777554332 222221 2789999999988774 58
Q ss_pred CeEEEEEcCCCceeeeeec---CCCCcCeeEEEECCCCCEEEEEEcC---CeEEEEEcCCCeeeEEeCCCcccCCCCCCC
Q 001248 973 TQLAIFETTKLECVKQWVP---RESSAPITHATFSCDSQLVYACFLD---ATVCVFSAANLKLRCRINPSAYLPAGVSSS 1046 (1114)
Q Consensus 973 ~~i~iwd~~~~~~~~~~~~---~~h~~~v~~l~~s~dg~~l~s~s~D---g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1046 (1114)
+.+.++|..+....+ ... -.-......+.++|||.++.+.... +.+.+.|..++.....-.+. ..
T Consensus 182 ~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~--------~~ 252 (381)
T COG3391 182 NTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPV--------GS 252 (381)
T ss_pred CeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccc--------cc
Confidence 899999987776653 110 0113456789999999987766654 48999999998887652211 11
Q ss_pred CccceEEEecCCCCCeEEEEeC-CCcEEEEeccCCC
Q 001248 1047 NVHPLVIAAHPQEPNEFALGLS-DGGVHVFEPLESE 1081 (1114)
Q Consensus 1047 ~v~~~~~~~~~~d~~~l~s~~~-Dg~v~vW~i~~~~ 1081 (1114)
. .+..+..+| ++..+.+... .+.+.+-|-.+..
T Consensus 253 ~-~~~~v~~~p-~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 253 G-APRGVAVDP-AGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred C-CCCceeECC-CCCEEEEEecCCCeEEEEeCCCCc
Confidence 1 234588888 5777777644 4888888887766
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.013 Score=65.92 Aligned_cols=175 Identities=14% Similarity=0.085 Sum_probs=107.1
Q ss_pred eEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEe---CC-CcEEEEEcccceEEEe--ecccccCeeEEEEcCC
Q 001248 840 KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM---DD-SSIQIYNVRVDEVKSK--LKGHSKRITGLAFSHA 913 (1114)
Q Consensus 840 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~---~d-g~v~iwd~~~~~~~~~--l~~h~~~V~~l~~s~d 913 (1114)
.+.+-|.. +.....+......+..-+|+| ++..++.-. .. ..++++++.+++.... +.++. ..-.|+||
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~---~~P~fspD 248 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN---GAPAFSPD 248 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc---CCccCCCC
Confidence 34444544 444445554555677778888 666554432 22 4699999998764433 34443 35689999
Q ss_pred CCEEEE-EeCCCcE--EEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCC----eEEEEEcCCCcee
Q 001248 914 LNVLVS-SGADSQL--CVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET----QLAIFETTKLECV 986 (1114)
Q Consensus 914 ~~~l~s-~s~D~~v--~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~----~i~iwd~~~~~~~ 986 (1114)
|+.|+. ...|+.. .+.|+.++... . +....+ .-..-.|+|||++++..+|. .|.+++.......
T Consensus 249 G~~l~f~~~rdg~~~iy~~dl~~~~~~--~-Lt~~~g------i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ 319 (425)
T COG0823 249 GSKLAFSSSRDGSPDIYLMDLDGKNLP--R-LTNGFG------INTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT 319 (425)
T ss_pred CCEEEEEECCCCCccEEEEcCCCCcce--e-cccCCc------cccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee
Confidence 988774 4566664 55566654421 1 222211 22466899999999985443 5888888877653
Q ss_pred eeeecCCCCcCeeEEEECCCCCEEEEEEcC-Ce--EEEEEcCCCeeeE
Q 001248 987 KQWVPRESSAPITHATFSCDSQLVYACFLD-AT--VCVFSAANLKLRC 1031 (1114)
Q Consensus 987 ~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D-g~--I~vwd~~~~~~~~ 1031 (1114)
+... .+ +.-..-.|||||++|+..+.. |. |.+.|+.++....
T Consensus 320 riT~-~~--~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~ 364 (425)
T COG0823 320 RLTF-SG--GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIR 364 (425)
T ss_pred Eeec-cC--CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEE
Confidence 3322 12 111277899999999877643 44 7777777666433
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.039 Score=59.31 Aligned_cols=235 Identities=11% Similarity=0.148 Sum_probs=133.7
Q ss_pred cCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEeCCe
Q 001248 761 NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGK 840 (1114)
Q Consensus 761 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~dg~ 840 (1114)
..++.|+.|+++| ++++++... ..... . .....|..+...++-+.+++-+|+.
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~---------------------~~~~~--i---~~~~~I~ql~vl~~~~~llvLsd~~ 57 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDP---------------------SKPTR--I---LKLSSITQLSVLPELNLLLVLSDGQ 57 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCC---------------------cccee--E---eecceEEEEEEecccCEEEEEcCCc
Confidence 4567789998888 788876210 00000 0 1334489999999999999999999
Q ss_pred EEEEEcCCCcccccc--------------CCCCCCeEEEE--EecCCCcEEEEEeCCCcEEEEEcccc-----eEEEeec
Q 001248 841 ISLFNMMTFKTMATF--------------MPPPPAATFLA--FHPQDNNIIAIGMDDSSIQIYNVRVD-----EVKSKLK 899 (1114)
Q Consensus 841 i~iwd~~~~~~~~~~--------------~~~~~~i~~l~--~sp~d~~~la~g~~dg~v~iwd~~~~-----~~~~~l~ 899 (1114)
+.++++......... ......+...+ -...+..+|+++. ...|.+|..... +..+++.
T Consensus 58 l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~ 136 (275)
T PF00780_consen 58 LYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEIS 136 (275)
T ss_pred cEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEE
Confidence 999998765443311 11122344444 1121345555555 448998887653 3445554
Q ss_pred ccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCC----CCCCCCCCceEEEEccCCcEEEEEeCCeE
Q 001248 900 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPT----GRTPTAQSDTRVQFHQDQIHFLVVHETQL 975 (1114)
Q Consensus 900 ~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~----~~~~~~~~i~~v~fspdg~~l~~~~d~~i 975 (1114)
-.+.+.+++|. ++.++.|..++ ..+.|+.++............ ........ ..+.--+++.+|++- +. +
T Consensus 137 -lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~Ll~~-~~-~ 209 (275)
T PF00780_consen 137 -LPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKP-LGIFQLSDNEFLLCY-DN-I 209 (275)
T ss_pred -cCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCc-eEEEEeCCceEEEEe-cc-e
Confidence 34778899998 56777777665 888899875542211111000 00000112 223233345666653 32 3
Q ss_pred EEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeC
Q 001248 976 AIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 976 ~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
-+|=-..|+..+.... .-...+.++++ ...||++.+ ++.|.||++.+++++..+.
T Consensus 210 g~fv~~~G~~~r~~~i-~W~~~p~~~~~--~~pyli~~~-~~~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 210 GVFVNKNGEPSRKSTI-QWSSAPQSVAY--SSPYLIAFS-SNSIEVRSLETGELVQTIP 264 (275)
T ss_pred EEEEcCCCCcCcccEE-EcCCchhEEEE--ECCEEEEEC-CCEEEEEECcCCcEEEEEE
Confidence 3332334443331100 11345666766 445777665 4669999999999998876
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.12 Score=59.29 Aligned_cols=245 Identities=14% Similarity=0.138 Sum_probs=123.5
Q ss_pred ceEEEEcCCCCeEEEEEecCC----cEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 361 PMSMDFHPVQQTLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 361 v~~v~~spdg~~ll~tg~~dg----~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
+....+||||++++++-+..| +|++.|+++|+.+.. .+ .. ..-..++|++|++.|.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i-----------------~~--~~~~~~~W~~d~~~~~ 185 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GI-----------------EN--PKFSSVSWSDDGKGFF 185 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EE-----------------EE--EESEEEEECTTSSEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-cc-----------------cc--cccceEEEeCCCCEEE
Confidence 346789999998666656666 499999999977652 11 11 0122399999999887
Q ss_pred EEeCCC-----------eEEEEEccCCceeeeeEeeccccCC--eeEEEecCCCCeeEEEEecC-C-CCEEEEeCCCC--
Q 001248 437 VAYSRH-----------IVQIYSYHGGDEVRQHLEIDAHVGG--VNDIAFSHPNKQLCVITCGD-D-KTIKVWDATNG-- 499 (1114)
Q Consensus 437 s~~~dg-----------~i~iwd~~~~~~~~~~~~l~~h~~~--V~~v~~s~d~~~~~l~s~~~-d-~~i~iwd~~~~-- 499 (1114)
....+. .|..|++.+...-. ...+.+.... ...+..++|++.+++.+.+. + ..+.+-|+..+
T Consensus 186 y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~ 264 (414)
T PF02897_consen 186 YTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGS 264 (414)
T ss_dssp EEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTT
T ss_pred EEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCC
Confidence 764332 37778877654321 1234444433 56889999999743333332 2 34788888764
Q ss_pred --cceeEeeccccCE-EEEeeccCCCceEEEEEec---CCeEEEEEcCCCCC---eeeecCCCCeeEEEEEecCCCeEEe
Q 001248 500 --AKQYIFEGHEAPV-YSVCPHHKENIQFIFSTAL---DGKIKAWLYDNLGS---RVDYEAPGRWCTTMAYSADGTRTYQ 570 (1114)
Q Consensus 500 --~~~~~~~~h~~~v-~~~~~~~~~~~~~l~s~~~---d~~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~g~~~~~ 570 (1114)
.....+......+ ..+... ++.+++.... .+.|...++..... ...+..+..
T Consensus 265 ~~~~~~~l~~~~~~~~~~v~~~---~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~---------------- 325 (414)
T PF02897_consen 265 PDAKPKLLSPREDGVEYYVDHH---GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDE---------------- 325 (414)
T ss_dssp SS-SEEEEEESSSS-EEEEEEE---TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SS----------------
T ss_pred CcCCcEEEeCCCCceEEEEEcc---CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCC----------------
Confidence 2333333333333 333321 2233332221 34555556655432 111111111
Q ss_pred eecccceeEEEecCCCCEEEEE-eC--CCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEE-eC---CCcEE
Q 001248 571 GFRKRSLGVVQFDTTKNRFLAA-GD--DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS-TN---DNGIK 643 (1114)
Q Consensus 571 ~~~~~~v~~~~~~~~~~~l~~~-~~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~~---dg~i~ 643 (1114)
......+...+++|+.. .. ...|+++++..+.....+..... ..|..+...+++..+... +. -+++.
T Consensus 326 -----~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P~~~y 399 (414)
T PF02897_consen 326 -----DVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEA-GSVSGVSGDFDSDELRFSYSSFTTPPTVY 399 (414)
T ss_dssp -----SEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSS-SEEEEEES-TT-SEEEEEEEETTEEEEEE
T ss_pred -----ceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcc-eEEeccCCCCCCCEEEEEEeCCCCCCEEE
Confidence 11112222223344443 33 34588899884455555544322 234455555555544332 21 35677
Q ss_pred EEEccCCc
Q 001248 644 ILATSDGI 651 (1114)
Q Consensus 644 iwd~~~~~ 651 (1114)
.||+.+++
T Consensus 400 ~~d~~t~~ 407 (414)
T PF02897_consen 400 RYDLATGE 407 (414)
T ss_dssp EEETTTTC
T ss_pred EEECCCCC
Confidence 78887773
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.023 Score=66.76 Aligned_cols=169 Identities=12% Similarity=0.049 Sum_probs=96.1
Q ss_pred CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEe------CCC--cEEEEEcccceEEEeecccccCeeEEE
Q 001248 838 GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM------DDS--SIQIYNVRVDEVKSKLKGHSKRITGLA 909 (1114)
Q Consensus 838 dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~------~dg--~v~iwd~~~~~~~~~l~~h~~~V~~l~ 909 (1114)
+|.+.-.+-.....+....+....+...+++| +|+.+|... .|+ .|.+++. .+.......+. ..+.-.
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~Ps 403 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPS 403 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCce
Confidence 55554443222222222223334678999999 777776655 244 4555554 23322223332 378899
Q ss_pred EcCCCCEEEEEeCC------------CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEE
Q 001248 910 FSHALNVLVSSGAD------------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAI 977 (1114)
Q Consensus 910 ~s~d~~~l~s~s~D------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~i 977 (1114)
|+|||+.|++.+.. +.+.+.+++.++... . ....|..+.|||||+.++...+++|.+
T Consensus 404 WspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~-----~------~~g~Issl~wSpDG~RiA~i~~g~v~V 472 (591)
T PRK13616 404 WSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS-----R------VPGPISELQLSRDGVRAAMIIGGKVYL 472 (591)
T ss_pred ECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh-----c------cCCCcCeEEECCCCCEEEEEECCEEEE
Confidence 99999988877533 222222343322211 0 124689999999999999966788877
Q ss_pred ---EEcCCCceeee-----eecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEc
Q 001248 978 ---FETTKLECVKQ-----WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1024 (1114)
Q Consensus 978 ---wd~~~~~~~~~-----~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~ 1024 (1114)
-....|. ... +. .+-...+.++.|..++.++ ++..++...+|.+
T Consensus 473 a~Vvr~~~G~-~~l~~~~~l~-~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 473 AVVEQTEDGQ-YALTNPREVG-PGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred EEEEeCCCCc-eeecccEEee-cccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence 4444554 111 11 1223346889999999965 5555555555554
|
|
| >KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0013 Score=69.03 Aligned_cols=108 Identities=10% Similarity=0.159 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHhcCCCcc----------HHHHHHHhhccCHHHHHHHhccCc-cccCcccchhhHH
Q 001248 6 RELVFLILQFLDEEKFKETVHKLEQESGFFFN----------MKYFEDEVHNGNWDDVEKYLSGFT-KVDDNRYSMKIFF 74 (1114)
Q Consensus 6 ~~v~~li~q~L~~~g~~~s~~~l~~Esg~~~~----------~~~~~~~i~~g~w~~~~~~~~~~~-~~~~~~~~~~~~~ 74 (1114)
+.|+.+|..|+...|..+.+..|-+|+|...+ +..+-+++..|+-.-|++.+..-. .+.. ....+-|
T Consensus 117 ~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~--~~s~LE~ 194 (394)
T KOG2817|consen 117 QVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKE--KSSSLEF 194 (394)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhcc--ccccHHH
Confidence 34689999999999999999999999998752 778899999999999999998752 2221 1225889
Q ss_pred HHHHHHHHHHHhcCCHH--HHHHHHHhhcccccccCHHHHHHH
Q 001248 75 EIRKQKYLEALDKHDRA--KAVEILVKDLKVFSTFNEELFKEI 115 (1114)
Q Consensus 75 ~l~~~~~lell~~~~~~--~A~~~l~~~l~~~~~~~~~~~~~l 115 (1114)
.|..+.|++++..|... +|+...|..++|+........+.+
T Consensus 195 ~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQkl 237 (394)
T KOG2817|consen 195 KLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKL 237 (394)
T ss_pred HHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHH
Confidence 99999999999999988 999999999999966554444433
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.01 Score=69.66 Aligned_cols=187 Identities=12% Similarity=0.054 Sum_probs=103.7
Q ss_pred CCccEEEEeeCCCEEEEEe-------CC--eEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCC--------
Q 001248 819 EAVPCFALSKNDSYVMSAS-------GG--KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD-------- 881 (1114)
Q Consensus 819 ~~v~~v~~s~d~~~l~~~~-------dg--~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~d-------- 881 (1114)
..+.+.+++|||+.++... |. .|.+++.. +.. ..+.. ....+.-.|+| +|..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECC-CCCceEEEecCcceEEEec
Confidence 3577899999999888654 33 45565642 222 33322 22478889999 77766665432
Q ss_pred ----CcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEE---EeCCCCccccccccccCCCCCCCCCC
Q 001248 882 ----SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCV---WSSDGWEKQKNRFLQIPTGRTPTAQS 954 (1114)
Q Consensus 882 ----g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~i---wd~~~~~~~~~~~~~~~~~~~~~~~~ 954 (1114)
+.+++.++..++... ...+.|..+.|||||..+|... ++.|.+ -....++...........+.. ..
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~---~~ 498 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG---DT 498 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC---Cc
Confidence 234333444433322 2345799999999999988766 467776 343444311111111111111 23
Q ss_pred ceEEEEccCCcEEEEEeCC--eEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeE
Q 001248 955 DTRVQFHQDQIHFLVVHET--QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1019 (1114)
Q Consensus 955 i~~v~fspdg~~l~~~~d~--~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I 1019 (1114)
+..+.|..++.+++...++ .+...++.... ...+........+.+++-+++ .|+.+..+|.+
T Consensus 499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~-~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~ 562 (591)
T PRK13616 499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSN-SDALPSRNLSAPVVAVAASPS--TVYVTDARAVL 562 (591)
T ss_pred cccceEecCCEEEEEecCCCCceEEEecCCcc-ccccCCCCccCceEEEecCCc--eEEEEcCCceE
Confidence 5789999999976554333 34444444222 222121123556777777653 35555556633
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.065 Score=57.31 Aligned_cols=221 Identities=13% Similarity=0.083 Sum_probs=126.3
Q ss_pred EEeeCCCEEEEEe--CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeec---
Q 001248 825 ALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK--- 899 (1114)
Q Consensus 825 ~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~--- 899 (1114)
.|.++...|.... .+.|.-|+..+++. ..+.. ...+.++..-. .+..|+++. .-+++++..++..+..+.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~-p~~~~~~~~~d-~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPS-PGGFSSGALID-AGGRLIACE--HGVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEEC-CCCcccceeec-CCCeEEEEc--cccEEEeccCCceeEEecccc
Confidence 4566777666555 68899999876543 22222 22334443333 333444332 346777776655432221
Q ss_pred -cc-ccCeeEEEEcCCCCEEEEEeC-----C----CcEEEEeCCC-CccccccccccCCCCCCCCCCceEEEEccCCcEE
Q 001248 900 -GH-SKRITGLAFSHALNVLVSSGA-----D----SQLCVWSSDG-WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 967 (1114)
Q Consensus 900 -~h-~~~V~~l~~s~d~~~l~s~s~-----D----~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l 967 (1114)
+. ...-+.+...|+|.+.++... . ..=.+|-+.. +.. ......+. ..-+.++||||++.|
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~-----~~l~~~~~---~~~NGla~SpDg~tl 177 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGV-----VRLLDDDL---TIPNGLAFSPDGKTL 177 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCE-----EEeecCcE---EecCceEECCCCCEE
Confidence 11 245567888999988776544 1 1113444442 111 11121111 134789999999888
Q ss_pred EEE--eCCeEEEEEcCC--Cc---eeeeeecCCCCcCeeEEEECCCCCEEEEEEcCC-eEEEEEcCCCeeeEEeCCCccc
Q 001248 968 LVV--HETQLAIFETTK--LE---CVKQWVPRESSAPITHATFSCDSQLVYACFLDA-TVCVFSAANLKLRCRINPSAYL 1039 (1114)
Q Consensus 968 ~~~--~d~~i~iwd~~~--~~---~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg-~I~vwd~~~~~~~~~~~~~~~~ 1039 (1114)
..+ ..+.|.-|+... +. .........+.+..-.++...+|.+.+++-.+| .|.+|+.+ |+++..+. +
T Consensus 178 y~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~----l 252 (307)
T COG3386 178 YVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIK----L 252 (307)
T ss_pred EEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEE----C
Confidence 875 447777777652 21 111122223456677888888998876555554 89999988 99998888 4
Q ss_pred CCCCCCCCccceEEEecCCCCCeEEEEeCC
Q 001248 1040 PAGVSSSNVHPLVIAAHPQEPNEFALGLSD 1069 (1114)
Q Consensus 1040 ~~~~~~~~v~~~~~~~~~~d~~~l~s~~~D 1069 (1114)
|. ..+.+++|-..+.+.|.+.+..
T Consensus 253 P~------~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 253 PV------KRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred CC------CCCccceEeCCCcCEEEEEecC
Confidence 42 2233677875455666555433
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.5 Score=52.65 Aligned_cols=294 Identities=13% Similarity=0.099 Sum_probs=155.8
Q ss_pred CcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEee-----CCCEEEEE
Q 001248 762 SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-----NDSYVMSA 836 (1114)
Q Consensus 762 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~-----d~~~l~~~ 836 (1114)
+...+++|+..|.++||+.....+.+....+.. ....+|..+..-. +...||+-
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~---------------------~l~~PILqv~~G~F~s~~~~~~LaVL 94 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLET---------------------QLKDPILQVECGKFVSGSEDLQLAVL 94 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEE---------------------ecCCcEEEEEeccccCCCCcceEEEe
Confidence 345789999999999998754443333221111 1344555554432 34467776
Q ss_pred eCCeEEEEEcCC--Cc-------cccccCCCC--CCeEEEEEecCC----CcEEEEEeCCCcEEEEEcccceEEEeeccc
Q 001248 837 SGGKISLFNMMT--FK-------TMATFMPPP--PAATFLAFHPQD----NNIIAIGMDDSSIQIYNVRVDEVKSKLKGH 901 (1114)
Q Consensus 837 ~dg~i~iwd~~~--~~-------~~~~~~~~~--~~i~~l~~sp~d----~~~la~g~~dg~v~iwd~~~~~~~~~l~~h 901 (1114)
.-.++.||.+.. +. .+..+..|. .....++.-|.+ ..+|.+-+.||.+.+|+-+.-.....+.+
T Consensus 95 hP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~- 173 (418)
T PF14727_consen 95 HPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD- 173 (418)
T ss_pred cCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-
Confidence 678888888731 11 111111121 122233333322 46899999999999999776554444444
Q ss_pred ccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccccccc-------ccCCCCC----------CCCCCceEEEEccCC
Q 001248 902 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFL-------QIPTGRT----------PTAQSDTRVQFHQDQ 964 (1114)
Q Consensus 902 ~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-------~~~~~~~----------~~~~~i~~v~fspdg 964 (1114)
.---..++|.+.-..+++++.+..+.-|....-........ ....+.. ...-.+..+.++...
T Consensus 174 ~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~ 253 (418)
T PF14727_consen 174 FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSE 253 (418)
T ss_pred CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCC
Confidence 22224578888888999999998898887532100000000 0000000 000122333444444
Q ss_pred cEEEEEeCCeEEEEEcCCCceeeeeecCCCCcC--eeEEEECCCCC---EEEEEEcCCeEEEEEcCCCeeeEEeCCCccc
Q 001248 965 IHFLVVHETQLAIFETTKLECVKQWVPRESSAP--ITHATFSCDSQ---LVYACFLDATVCVFSAANLKLRCRINPSAYL 1039 (1114)
Q Consensus 965 ~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~--v~~l~~s~dg~---~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~ 1039 (1114)
..+++-....+.+.+.. |........+..... +..+....++. .+++++.++++.||.=.+ ++-... +
T Consensus 254 ~~IvvLger~Lf~l~~~-G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~--L~WsA~----l 326 (418)
T PF14727_consen 254 SDIVVLGERSLFCLKDN-GSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT--LVWSAQ----L 326 (418)
T ss_pred ceEEEEecceEEEEcCC-CeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCe--EEEecC----C
Confidence 45555556677776663 454444433221111 11121122322 478888999999997433 332222 2
Q ss_pred CCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCCCcccCCCC
Q 001248 1040 PAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPP 1089 (1114)
Q Consensus 1040 ~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~~~~~~~~~ 1089 (1114)
+.. .| .+.++..++-...|++-+.+|.+.+-=+-|.......|++
T Consensus 327 ~~~----PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs~~~~p~~ 371 (418)
T PF14727_consen 327 PHV----PV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPSLFQVPPL 371 (418)
T ss_pred CCC----CE-EEEecccCCCCceEEEEcCCCcEEEEEeCCCCccccCCCc
Confidence 211 12 2233333333568999999999999888776644444333
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.076 Score=61.05 Aligned_cols=239 Identities=12% Similarity=0.102 Sum_probs=127.1
Q ss_pred ccEEEEeeCCCEEEEEe--CC----eEEEEEcCCCcccccc-CCCCCCeEEEEEecCCCcEEEEEe-CC----------C
Q 001248 821 VPCFALSKNDSYVMSAS--GG----KISLFNMMTFKTMATF-MPPPPAATFLAFHPQDNNIIAIGM-DD----------S 882 (1114)
Q Consensus 821 v~~v~~s~d~~~l~~~~--dg----~i~iwd~~~~~~~~~~-~~~~~~i~~l~~sp~d~~~la~g~-~d----------g 882 (1114)
+...++||||+++|.+- .| .|+++|+.+++.+... .. .....+.|.+ +++.|+... .+ .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSD-DGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECT-TSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeC-CCCEEEEEEeCcccccccCCCCc
Confidence 34678999999999773 33 4999999998765432 21 1123499999 655554443 22 2
Q ss_pred cEEEEEcccceE--EEeecccccC--eeEEEEcCCCCEEEEEeCC----CcEEEEeCCCCc--cccccccccCCCCCCCC
Q 001248 883 SIQIYNVRVDEV--KSKLKGHSKR--ITGLAFSHALNVLVSSGAD----SQLCVWSSDGWE--KQKNRFLQIPTGRTPTA 952 (1114)
Q Consensus 883 ~v~iwd~~~~~~--~~~l~~h~~~--V~~l~~s~d~~~l~s~s~D----~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~ 952 (1114)
.|+.|.+.+... ...+...... ...+..++|+++|+..+.. ..+.+.++.... .....++....
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~------ 276 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE------ 276 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS------
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC------
Confidence 478888876532 2333333322 5688999999998754332 236777777641 11122222111
Q ss_pred CCceEEEEccCCcEEEEE----eCCeEEEEEcCCCce---eeeeecCCCCc--CeeEEEECCCCCEE-EEEEcCC--eEE
Q 001248 953 QSDTRVQFHQDQIHFLVV----HETQLAIFETTKLEC---VKQWVPRESSA--PITHATFSCDSQLV-YACFLDA--TVC 1020 (1114)
Q Consensus 953 ~~i~~v~fspdg~~l~~~----~d~~i~iwd~~~~~~---~~~~~~~~h~~--~v~~l~~s~dg~~l-~s~s~Dg--~I~ 1020 (1114)
..+....-..++.+++.+ ..+.|...++.+... ...+. .|.. .+..+.. .+.+| +....++ .|+
T Consensus 277 ~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~--~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~ 352 (414)
T PF02897_consen 277 DGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI--PEDEDVSLEDVSL--FKDYLVLSYRENGSSRLR 352 (414)
T ss_dssp SS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE----SSSEEEEEEEE--ETTEEEEEEEETTEEEEE
T ss_pred CceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEc--CCCCceeEEEEEE--ECCEEEEEEEECCccEEE
Confidence 123333333345454443 345777788877663 21333 3344 3444444 44454 4455554 489
Q ss_pred EEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCC---CcEEEEeccCCC
Q 001248 1021 VFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD---GGVHVFEPLESE 1081 (1114)
Q Consensus 1021 vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~D---g~v~vW~i~~~~ 1081 (1114)
+|++..+.....+. ++.. ..+. .+...+....+.++.++- ++++.+|+.+++
T Consensus 353 v~~~~~~~~~~~~~----~p~~---g~v~--~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 353 VYDLDDGKESREIP----LPEA---GSVS--GVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EEETT-TEEEEEEE----SSSS---SEEE--EEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred EEECCCCcEEeeec----CCcc---eEEe--ccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 99999445444444 2211 1122 444444333444444432 688999999887
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.062 Score=54.02 Aligned_cols=254 Identities=14% Similarity=0.181 Sum_probs=132.2
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCc-EEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGD-IGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 435 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~-v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 435 (1114)
-...--.++|+|...+-++.+-.-|+ ..++|.+++....... ......+-+|. .|||||.+|
T Consensus 66 lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~-----------s~~~RHfyGHG------vfs~dG~~L 128 (366)
T COG3490 66 LPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLV-----------SQEGRHFYGHG------VFSPDGRLL 128 (366)
T ss_pred cccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEe-----------cccCceeeccc------ccCCCCcEE
Confidence 33444568888887765666666554 6789988877654311 11122355663 699999999
Q ss_pred EEEeCC-----CeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecC----------------CCCEEEE
Q 001248 436 GVAYSR-----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD----------------DKTIKVW 494 (1114)
Q Consensus 436 as~~~d-----g~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~----------------d~~i~iw 494 (1114)
...-+| |.|-|||...+ .....++..|.-.-..+.|.+||+.+.++-|+- .-++.+-
T Consensus 129 YATEndfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvll 206 (366)
T COG3490 129 YATENDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLL 206 (366)
T ss_pred EeecCCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEE
Confidence 876443 78999999843 455567888888889999999999533333310 1234455
Q ss_pred eCCCCcceeE--ee--ccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEe
Q 001248 495 DATNGAKQYI--FE--GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 570 (1114)
Q Consensus 495 d~~~~~~~~~--~~--~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~ 570 (1114)
|..+|..+.. +. -+...|..++. ..||..++.+-..|. -...-.+.-......++.-+...++..
T Consensus 207 d~atG~liekh~Lp~~l~~lSiRHld~--g~dgtvwfgcQy~G~-----~~d~ppLvg~~~~g~~l~~~~~pee~~---- 275 (366)
T COG3490 207 DAATGNLIEKHTLPASLRQLSIRHLDI--GRDGTVWFGCQYRGP-----RNDLPPLVGHFRKGEPLEFLDLPEEQT---- 275 (366)
T ss_pred eccccchhhhccCchhhhhcceeeeee--CCCCcEEEEEEeeCC-----CccCCcceeeccCCCcCcccCCCHHHH----
Confidence 5555555432 22 23344555553 333322222211110 000000000000011111110000000
Q ss_pred eecccceeEEEecCCCCEEEEEe-CCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEE
Q 001248 571 GFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA 646 (1114)
Q Consensus 571 ~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd 646 (1114)
..-.+-+..++.+-+..+++..+ ..+...+||..+|..+..-... .+..++- ...-+++.+.+|.+.++.
T Consensus 276 ~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~----daaGva~--~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 276 AAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALP----DAAGVAA--AKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred HHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccc----cccccee--ccCceEEecCCceEEecc
Confidence 00011233344554444454444 5667789999999887665432 2223333 334466667778888773
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.12 Score=55.45 Aligned_cols=232 Identities=13% Similarity=0.063 Sum_probs=131.6
Q ss_pred EEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCC
Q 001248 363 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH 442 (1114)
Q Consensus 363 ~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg 442 (1114)
+..|.+++..|+.+--..+.|.-|+..+++... +. +.+.+.++..-.++..|+++. .|
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--------------------~~-~p~~~~~~~~~d~~g~Lv~~~-~g 86 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRV--------------------FP-SPGGFSSGALIDAGGRLIACE-HG 86 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceEE--------------------EE-CCCCcccceeecCCCeEEEEc-cc
Confidence 446778888778887778999999998775543 11 122344444444444555442 33
Q ss_pred eEEEEEccCCceeeeeEeec-cc-cCCeeEEEecCCCCeeEEEEecC------C---CCEEEEeCC-CCcceeEeecccc
Q 001248 443 IVQIYSYHGGDEVRQHLEID-AH-VGGVNDIAFSHPNKQLCVITCGD------D---KTIKVWDAT-NGAKQYIFEGHEA 510 (1114)
Q Consensus 443 ~i~iwd~~~~~~~~~~~~l~-~h-~~~V~~v~~s~d~~~~~l~s~~~------d---~~i~iwd~~-~~~~~~~~~~h~~ 510 (1114)
+.+++.+++..+....... +. ....+.+...|+|. +.++... + ..-.+|-+. .+..++.+..+-.
T Consensus 87 -~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~ 163 (307)
T COG3386 87 -VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLT 163 (307)
T ss_pred -cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEE
Confidence 7778877665432222221 11 23567889999998 3333222 1 112344444 5666666666666
Q ss_pred CEEEEeeccCCCceEEEEE-ecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEE
Q 001248 511 PVYSVCPHHKENIQFIFST-ALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 589 (1114)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l 589 (1114)
.-+.++|+++. +.++.. +..+.|.-|++...... .... ... .......+..--++.+.+|++.
T Consensus 164 ~~NGla~SpDg--~tly~aDT~~~~i~r~~~d~~~g~----~~~~-~~~---------~~~~~~~G~PDG~~vDadG~lw 227 (307)
T COG3386 164 IPNGLAFSPDG--KTLYVADTPANRIHRYDLDPATGP----IGGR-RGF---------VDFDEEPGLPDGMAVDADGNLW 227 (307)
T ss_pred ecCceEECCCC--CEEEEEeCCCCeEEEEecCcccCc----cCCc-ceE---------EEccCCCCCCCceEEeCCCCEE
Confidence 67888987654 455444 45688888877631000 0000 000 0111111222235566677766
Q ss_pred EEEeCCC-eEEEEECCCcceEEEeccCCCCCCcCeEEEcC-CCCEEEEEeC
Q 001248 590 LAAGDDF-SIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTN 638 (1114)
Q Consensus 590 ~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~ 638 (1114)
+++...| .|.+|+.+ |+.+..+..+. ..+++++|-- +.+.|++.+.
T Consensus 228 ~~a~~~g~~v~~~~pd-G~l~~~i~lP~--~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 228 VAAVWGGGRVVRFNPD-GKLLGEIKLPV--KRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred EecccCCceEEEECCC-CcEEEEEECCC--CCCccceEeCCCcCEEEEEec
Confidence 5544443 99999998 99998888763 3577888864 4555554443
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.032 Score=66.49 Aligned_cols=146 Identities=10% Similarity=0.115 Sum_probs=98.6
Q ss_pred CCcEEEEE-eCCCcEEEEEcccceEEEeecccccC-eeEEEEcCC-------CCEEEEEeCCCcEEEEeCCCCccccccc
Q 001248 871 DNNIIAIG-MDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFSHA-------LNVLVSSGADSQLCVWSSDGWEKQKNRF 941 (1114)
Q Consensus 871 d~~~la~g-~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~s~d-------~~~l~s~s~D~~v~iwd~~~~~~~~~~~ 941 (1114)
+.++|..- .....|+-.|++.|+.+..+..|... |..+ .|+ ...-+.|-.+..+..||.+-... .+
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~---k~ 566 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN---KL 566 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCC---ce
Confidence 44455443 35678999999999999999988754 5444 443 23345566778899999875321 11
Q ss_pred cccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEE
Q 001248 942 LQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCV 1021 (1114)
Q Consensus 942 ~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~v 1021 (1114)
...............+++-+.+|..++.+.+|.||+||-. |..-++.. .+-+.+|.+|..+.||++|++.+ +.++.+
T Consensus 567 v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~-g~~AKT~l-p~lG~pI~~iDvt~DGkwilaTc-~tyLlL 643 (794)
T PF08553_consen 567 VDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL-GKRAKTAL-PGLGDPIIGIDVTADGKWILATC-KTYLLL 643 (794)
T ss_pred eeccccccccCCCceEEEecCCceEEEEeCCCcEEeeccc-chhhhhcC-CCCCCCeeEEEecCCCcEEEEee-cceEEE
Confidence 1100001112235678888888887777899999999954 43333333 25578999999999999988665 678888
Q ss_pred EEc
Q 001248 1022 FSA 1024 (1114)
Q Consensus 1022 wd~ 1024 (1114)
++.
T Consensus 644 i~t 646 (794)
T PF08553_consen 644 IDT 646 (794)
T ss_pred EEE
Confidence 886
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0026 Score=70.54 Aligned_cols=96 Identities=17% Similarity=0.414 Sum_probs=73.0
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCee-EEEEcCCCCeE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN-RVIWSPDGSLF 435 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~-~l~~spdg~~l 435 (1114)
-.-.|.-+.|+|.-. |+|++..+|.|.+..++ ... +|+ +.-|+-.|+ +++|.|||++|
T Consensus 19 l~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~qR-------lwt------------ip~p~~~v~~sL~W~~DGkll 77 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQR-------LWT------------IPIPGENVTASLCWRPDGKLL 77 (665)
T ss_pred cccceEEEEEcCccc-hhheeccCCcEEEEEec-cce-------eEe------------ccCCCCccceeeeecCCCCEE
Confidence 345678899999988 79999999999998877 332 343 333444565 99999999999
Q ss_pred EEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecC
Q 001248 436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH 475 (1114)
Q Consensus 436 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~ 475 (1114)
|+|-.||+|++-|+.++..+... ...-...|.++-|++
T Consensus 78 aVg~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 78 AVGFKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWDR 115 (665)
T ss_pred EEEecCCeEEEEEccCCCceecc--ccccccchheeeccc
Confidence 99999999999999998866531 122345677777763
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.046 Score=59.65 Aligned_cols=150 Identities=12% Similarity=0.119 Sum_probs=93.4
Q ss_pred CeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEE-----EEEecCCeEEEEEcCCCCCeeeecCC
Q 001248 478 KQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI-----FSTALDGKIKAWLYDNLGSRVDYEAP 552 (1114)
Q Consensus 478 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-----~s~~~d~~i~~wd~~~~~~~~~~~~~ 552 (1114)
..+++.++.....++--|++.|+.+..+.-|.. |.-+.+.+...+..+ +.|-.|..|.-||.+-...-
T Consensus 345 snlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~------ 417 (644)
T KOG2395|consen 345 SNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN------ 417 (644)
T ss_pred cceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc------
Confidence 334677788888899999999999999987766 666666555444333 34556888999998743221
Q ss_pred CCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCE
Q 001248 553 GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCL 632 (1114)
Q Consensus 553 ~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~ 632 (1114)
-+++..... + .+...+.|.+-..+ .++++|+.+|.|++||--..+....+++-+ .+|..+..+.||++
T Consensus 418 -----kl~~~q~kq--y--~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG--~~I~hVdvtadGKw 485 (644)
T KOG2395|consen 418 -----KLAVVQSKQ--Y--STKNNFSCFATTES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLG--DAIKHVDVTADGKW 485 (644)
T ss_pred -----eeeeeeccc--c--ccccccceeeecCC-ceEEEeecCCcEEeehhhhhhhhhcccccC--CceeeEEeeccCcE
Confidence 011100000 0 00112222222222 359999999999999973333334445444 37999999999999
Q ss_pred EEEEeCCCcEEEEEc
Q 001248 633 LAVSTNDNGIKILAT 647 (1114)
Q Consensus 633 l~~~~~dg~i~iwd~ 647 (1114)
+++.+. ..+.+.++
T Consensus 486 il~Tc~-tyLlLi~t 499 (644)
T KOG2395|consen 486 ILATCK-TYLLLIDT 499 (644)
T ss_pred EEEecc-cEEEEEEE
Confidence 876554 56666654
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.29 Score=49.48 Aligned_cols=234 Identities=15% Similarity=0.113 Sum_probs=134.9
Q ss_pred cEEEEeeCCCE-EEEEe-CCe-EEEEEcCCCccccccCCCCCC--eEEEEEecCCCcEEEEEeCC-----CcEEEEEccc
Q 001248 822 PCFALSKNDSY-VMSAS-GGK-ISLFNMMTFKTMATFMPPPPA--ATFLAFHPQDNNIIAIGMDD-----SSIQIYNVRV 891 (1114)
Q Consensus 822 ~~v~~s~d~~~-l~~~~-dg~-i~iwd~~~~~~~~~~~~~~~~--i~~l~~sp~d~~~la~g~~d-----g~v~iwd~~~ 891 (1114)
..++++|-... ++.+- -|+ ..++|..+.+.+.++...++. --.=.||| ||.+|...-.| |.|-|||...
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEeccc
Confidence 34667765543 33443 354 778898887776655432222 11235899 89888765433 6899999875
Q ss_pred c-eEEEeecccccCeeEEEEcCCCCEEEEEeC------C------------CcEEEEeCCCCccccccccccCCCCCCCC
Q 001248 892 D-EVKSKLKGHSKRITGLAFSHALNVLVSSGA------D------------SQLCVWSSDGWEKQKNRFLQIPTGRTPTA 952 (1114)
Q Consensus 892 ~-~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~------D------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 952 (1114)
+ +.+.++..|.-.--.+.|.+||+.|+.+.. | -++.+.|..+++...+..+.....+
T Consensus 150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~---- 225 (366)
T COG3490 150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ---- 225 (366)
T ss_pred ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh----
Confidence 4 566788888777778999999999987643 1 1233444344443332222211111
Q ss_pred CCceEEEEccCCcEEEEE-eCC-----eEEEEEcCCCceeeeeecC-----CCCcCeeEEEECCCCCEEEEEEcC-CeEE
Q 001248 953 QSDTRVQFHQDQIHFLVV-HET-----QLAIFETTKLECVKQWVPR-----ESSAPITHATFSCDSQLVYACFLD-ATVC 1020 (1114)
Q Consensus 953 ~~i~~v~fspdg~~l~~~-~d~-----~i~iwd~~~~~~~~~~~~~-----~h~~~v~~l~~s~dg~~l~s~s~D-g~I~ 1020 (1114)
.++..++.-+||..++.+ ..| --.+=-...++.+.-+... .-...|-+++...+..+++..+-. +...
T Consensus 226 lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~v 305 (366)
T COG3490 226 LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAV 305 (366)
T ss_pred cceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEE
Confidence 367888888888877653 111 1111112223332222211 113457788888777777666654 5688
Q ss_pred EEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEE
Q 001248 1021 VFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1075 (1114)
Q Consensus 1021 vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW 1075 (1114)
+||..+|..+.... +++. . .++- ...=+++.+.+|.+.+.
T Consensus 306 i~da~tG~vv~~a~----l~da------a--Gva~---~~~gf~vssg~G~~~~~ 345 (366)
T COG3490 306 IWDAATGAVVSEAA----LPDA------A--GVAA---AKGGFAVSSGQGRIIFY 345 (366)
T ss_pred EEEcCCCcEEeccc----cccc------c--ccee---ccCceEEecCCceEEec
Confidence 99999999886544 2221 1 1221 12335555668888776
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.079 Score=58.35 Aligned_cols=175 Identities=15% Similarity=0.128 Sum_probs=102.3
Q ss_pred CeEEEEEcCCCccccccCCCC-CCeEEEE---EecC---CCcEEEEEeC----------CCcEEEEEcccc----eEEEe
Q 001248 839 GKISLFNMMTFKTMATFMPPP-PAATFLA---FHPQ---DNNIIAIGMD----------DSSIQIYNVRVD----EVKSK 897 (1114)
Q Consensus 839 g~i~iwd~~~~~~~~~~~~~~-~~i~~l~---~sp~---d~~~la~g~~----------dg~v~iwd~~~~----~~~~~ 897 (1114)
..|++.|..+.+.+.++.-.. ..+++++ |..+ ...+|++|+. .|.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 457888888777765543222 2344433 3321 1578888763 289999999884 12222
Q ss_pred e--cccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-cccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCC
Q 001248 898 L--KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE-KQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HET 973 (1114)
Q Consensus 898 l--~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~ 973 (1114)
+ ....++|++++-- .++ |+.+. .+.|.+|++...+ .... ..... .+........+.+++++ ..+
T Consensus 82 i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~---~~~~~------~~~i~sl~~~~~~I~vgD~~~ 149 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKK---AFYDS------PFYITSLSVFKNYILVGDAMK 149 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEE---EEE-B------SSSEEEEEEETTEEEEEESSS
T ss_pred EEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhh---heecc------eEEEEEEeccccEEEEEEccc
Confidence 2 2357889998876 444 44443 4779999999866 2211 11111 22344444446688776 456
Q ss_pred eEEEEEcCC-CceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcC
Q 001248 974 QLAIFETTK-LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA 1025 (1114)
Q Consensus 974 ~i~iwd~~~-~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~ 1025 (1114)
.+.++.... ...+..+..+.....++++.|-+|++.++++..+|.+.++...
T Consensus 150 sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 150 SVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp SEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred CEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 666664332 2223333323346678999998777799999999999999886
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0034 Score=69.67 Aligned_cols=94 Identities=10% Similarity=0.130 Sum_probs=76.7
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCee-EEEEcCCCCEEEEEeCCCcEEEEeCCCCccc
Q 001248 859 PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT-GLAFSHALNVLVSSGADSQLCVWSSDGWEKQ 937 (1114)
Q Consensus 859 ~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~-~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~ 937 (1114)
...+..+.|+| .-.++|++..+|.|.++.+. .+.+.++.-|...++ +++|.|||+.||.|-.||+|++-|++++...
T Consensus 20 ~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 45688899999 88999999999999999998 777888887877787 9999999999999999999999999997654
Q ss_pred cccccccCCCCCCCCCCceEEEEc
Q 001248 938 KNRFLQIPTGRTPTAQSDTRVQFH 961 (1114)
Q Consensus 938 ~~~~~~~~~~~~~~~~~i~~v~fs 961 (1114)
....... ...|.++-|+
T Consensus 98 ~~~~~s~-------e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSV-------ETDISKGIWD 114 (665)
T ss_pred ecccccc-------ccchheeecc
Confidence 4321111 1356666665
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.13 Score=57.05 Aligned_cols=94 Identities=18% Similarity=0.291 Sum_probs=61.2
Q ss_pred EEEEcCCCCeEEEEeCCCeEEE---EEccC-C--ce---eeeeEeecccc-CCeeEEEecCC---C------CeeEEEEe
Q 001248 425 RVIWSPDGSLFGVAYSRHIVQI---YSYHG-G--DE---VRQHLEIDAHV-GGVNDIAFSHP---N------KQLCVITC 485 (1114)
Q Consensus 425 ~l~~spdg~~las~~~dg~i~i---wd~~~-~--~~---~~~~~~l~~h~-~~V~~v~~s~d---~------~~~~l~s~ 485 (1114)
.++.+|++++||.+..+..+.+ |+... + .. +.-...+.... ..|+++.+-|= . ....++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4688999999999988776665 64421 1 11 11111222211 45666665432 1 12279999
Q ss_pred cCCCCEEEEeCCCCcceeEeeccccCEEEEeecc
Q 001248 486 GDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHH 519 (1114)
Q Consensus 486 ~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 519 (1114)
..+|.|++|. ++|..+..-.-|..+|..+....
T Consensus 86 ~ssG~vrfyt-e~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYT-ENGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEe-ccchHHHHHhcCccceEEEEecc
Confidence 9999999999 68888876667899999887543
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.92 E-value=1.7 Score=52.94 Aligned_cols=86 Identities=14% Similarity=0.094 Sum_probs=52.1
Q ss_pred CCeEEEEEcCCCceeeeeecCCCC----------------cCeeEEEECCCCCEEEE-EEcCCeEEEEEcCCCeeeEEeC
Q 001248 972 ETQLAIFETTKLECVKQWVPRESS----------------APITHATFSCDSQLVYA-CFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 972 d~~i~iwd~~~~~~~~~~~~~~h~----------------~~v~~l~~s~dg~~l~s-~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
-|.|.-+|+.+++.+-......+. .+...=...-.|.+++. |+.|+.++-+|.++|+.+-+.+
T Consensus 640 ~G~l~AiDl~tGk~~W~~~~g~~~~~~p~~~~~~~~~~~g~p~~gG~l~TagglvF~~gt~d~~l~A~D~~tGk~lW~~~ 719 (764)
T TIGR03074 640 WGYMAAIDLKTGKVVWQHPNGTVRDTGPMGIRMPLPIPIGVPTLGGPLATAGGLVFIGATQDNYLRAYDLSTGKELWKAR 719 (764)
T ss_pred cEEEEEEECCCCcEeeeeECCccccccccccccccccccCCcccCCcEEEcCCEEEEEeCCCCEEEEEECCCCceeeEee
Confidence 367888888888876655432110 11111112335667765 7789999999999999998877
Q ss_pred CCcccCCCCCCCCccceEEEec-CCCCCeEEEE
Q 001248 1035 PSAYLPAGVSSSNVHPLVIAAH-PQEPNEFALG 1066 (1114)
Q Consensus 1035 ~~~~~~~~~~~~~v~~~~~~~~-~~d~~~l~s~ 1066 (1114)
++.+ +...-+.|. .+..++++..
T Consensus 720 ----l~~~-----~~a~P~tY~~~~GkQYVvi~ 743 (764)
T TIGR03074 720 ----LPAG-----GQATPMTYMGKDGKQYVVIV 743 (764)
T ss_pred ----CCCC-----cccCCEEEEecCCEEEEEEE
Confidence 5554 222235555 4333455543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0023 Score=43.96 Aligned_cols=39 Identities=33% Similarity=0.559 Sum_probs=34.6
Q ss_pred ceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 001248 892 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930 (1114)
Q Consensus 892 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd 930 (1114)
++.+..+..|...|+++.|++++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.22 Score=54.88 Aligned_cols=222 Identities=13% Similarity=0.092 Sum_probs=118.0
Q ss_pred CcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCC----CCeEEEEeC---------C-CeEEE
Q 001248 381 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD----GSLFGVAYS---------R-HIVQI 446 (1114)
Q Consensus 381 g~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd----g~~las~~~---------d-g~i~i 446 (1114)
..|++.|..+.+.+....+.- ..+-..+..+.|..+ ..+|++|+. . |.|.+
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~---------------~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v 66 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEP---------------NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILV 66 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEET---------------TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEE
T ss_pred cEEEEEeCCCCeEEEEEECCC---------------CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEE
Confidence 357888888877765544321 111113334444443 567887753 2 88999
Q ss_pred EEccCC----ceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCc-ceeEee-ccccCEEEEeeccC
Q 001248 447 YSYHGG----DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFE-GHEAPVYSVCPHHK 520 (1114)
Q Consensus 447 wd~~~~----~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~-~h~~~v~~~~~~~~ 520 (1114)
+++... ..+..... ....++|++++-- ++. ++++. .+.|.+|++...+ ....-. .....+.++...
T Consensus 67 ~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~~--lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~-- 138 (321)
T PF03178_consen 67 FEISESPENNFKLKLIHS-TEVKGPVTAICSF-NGR--LVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF-- 138 (321)
T ss_dssp EEECSS-----EEEEEEE-EEESS-EEEEEEE-TTE--EEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--
T ss_pred EEEEcccccceEEEEEEE-EeecCcceEhhhh-CCE--EEEee--cCEEEEEEccCcccchhhheecceEEEEEEecc--
Confidence 999984 23333222 2457889998877 343 34444 3789999998877 333221 123356666532
Q ss_pred CCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEE
Q 001248 521 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF 600 (1114)
Q Consensus 521 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 600 (1114)
. ++++.|...+.+.++.++...... .-++-+.. ...+..+.+-++++.++++..+|.+.+
T Consensus 139 ~--~~I~vgD~~~sv~~~~~~~~~~~l---------~~va~d~~---------~~~v~~~~~l~d~~~~i~~D~~gnl~~ 198 (321)
T PF03178_consen 139 K--NYILVGDAMKSVSLLRYDEENNKL---------ILVARDYQ---------PRWVTAAEFLVDEDTIIVGDKDGNLFV 198 (321)
T ss_dssp T--TEEEEEESSSSEEEEEEETTTE-E---------EEEEEESS----------BEEEEEEEE-SSSEEEEEETTSEEEE
T ss_pred c--cEEEEEEcccCEEEEEEEccCCEE---------EEEEecCC---------CccEEEEEEecCCcEEEEEcCCCeEEE
Confidence 2 488888888888877655422111 11111111 112333334333346888999999998
Q ss_pred EECCC-------c--ceEEEeccCCCCCCcCeE---EEcC--CC------CEEEEEeCCCcEEEEE
Q 001248 601 WDMDS-------V--QLLTSIDADGGLPASPRI---RFNK--DG------CLLAVSTNDNGIKILA 646 (1114)
Q Consensus 601 wd~~~-------~--~~~~~~~~~~~~~~v~~~---~~s~--d~------~~l~~~~~dg~i~iwd 646 (1114)
+.... + +.......+-+ ..|+++ ++.| .+ ..++.++.+|.|...-
T Consensus 199 l~~~~~~~~~~~~~~~L~~~~~f~lg-~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~ 263 (321)
T PF03178_consen 199 LRYNPEIPNSRDGDPKLERISSFHLG-DIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVLI 263 (321)
T ss_dssp EEE-SS-SSTTTTTTBEEEEEEEE-S-S-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEEE
T ss_pred EEECCCCcccccccccceeEEEEECC-CccceEEEEEeeecCCCCcccccceEEEEecCCEEEEEE
Confidence 87652 2 22222222222 245555 4444 12 2478888999988543
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.27 Score=52.81 Aligned_cols=222 Identities=13% Similarity=0.136 Sum_probs=124.6
Q ss_pred eCCCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEee---------
Q 001248 828 KNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL--------- 898 (1114)
Q Consensus 828 ~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l--------- 898 (1114)
..++.|+.|.++.+.+++........... +...|..+...| +-+.|++-+ |+.++++++..-......
T Consensus 5 ~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~-~~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 5 SWGDRLLVGTEDGLYVYDLSDPSKPTRIL-KLSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred cCCCEEEEEECCCEEEEEecCCccceeEe-ecceEEEEEEec-ccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 46778888884449999983322222222 223499999998 555555443 599999998764333211
Q ss_pred -----cccccCeeEEE--EcCCC-CEEEEEeCCCcEEEEeCCCCccc---cccccccCCCCCCCCCCceEEEEccCCcEE
Q 001248 899 -----KGHSKRITGLA--FSHAL-NVLVSSGADSQLCVWSSDGWEKQ---KNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 967 (1114)
Q Consensus 899 -----~~h~~~V~~l~--~s~d~-~~l~s~s~D~~v~iwd~~~~~~~---~~~~~~~~~~~~~~~~~i~~v~fspdg~~l 967 (1114)
......+...+ -...+ ..|+.+ ..++|.+|........ ...-+... ..+..++|. +..+
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~lp-------~~~~~i~~~--~~~i 151 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEISLP-------DPPSSIAFL--GNKI 151 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEEcC-------CCcEEEEEe--CCEE
Confidence 11222344444 11233 344444 4558999988763211 11111111 367888888 6677
Q ss_pred EEEeCCeEEEEEcCCCceeeeeecCCC----------CcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeE--EeCC
Q 001248 968 LVVHETQLAIFETTKLECVKQWVPRES----------SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRC--RINP 1035 (1114)
Q Consensus 968 ~~~~d~~i~iwd~~~~~~~~~~~~~~h----------~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~--~~~~ 1035 (1114)
+++..+...+.|+.++.....+..... ..++..+.. +++.+|++- |..-.+.|. .|+... .+.
T Consensus 152 ~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~- 226 (275)
T PF00780_consen 152 CVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKSTIQ- 226 (275)
T ss_pred EEEeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccEEE-
Confidence 777788899999997766544432211 123444444 345676643 333333443 444332 222
Q ss_pred CcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1036 SAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1036 ~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
-. ..|..+++.. .+|+..+. +.|.||++.+++
T Consensus 227 ---W~-------~~p~~~~~~~---pyli~~~~-~~iEV~~~~~~~ 258 (275)
T PF00780_consen 227 ---WS-------SAPQSVAYSS---PYLIAFSS-NSIEVRSLETGE 258 (275)
T ss_pred ---cC-------CchhEEEEEC---CEEEEECC-CEEEEEECcCCc
Confidence 00 2344677753 46666554 559999999998
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.43 Score=53.04 Aligned_cols=78 Identities=9% Similarity=-0.092 Sum_probs=54.1
Q ss_pred CcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEec----CCC-----------
Q 001248 995 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAH----PQE----------- 1059 (1114)
Q Consensus 995 ~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~d----------- 1059 (1114)
...+.+++.+|++++.|+...=|+|.++|+.++..++.++ |..+. .+.|. ..+
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWK-------GYRdA-----qc~wi~~~~~~~~~~~~~~~~~~ 374 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWK-------GYRDA-----QCGWIEVPEEGDRDRSNSNSPKS 374 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhc-------cCccc-----eEEEEEeecccccccccccccCC
Confidence 4568899999999988888777999999999998887766 21111 11111 000
Q ss_pred ----C-CeEEEEeCCCcEEEEeccCCCCcc
Q 001248 1060 ----P-NEFALGLSDGGVHVFEPLESEGKW 1084 (1114)
Q Consensus 1060 ----~-~~l~s~~~Dg~v~vW~i~~~~~~~ 1084 (1114)
. -+++-+-.-|.|.||.+..|....
T Consensus 375 ~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~ 404 (415)
T PF14655_consen 375 SSRFALFLVIYAPRRGILEVWSMRQGPRVA 404 (415)
T ss_pred CCcceEEEEEEeccCCeEEEEecCCCCEEE
Confidence 0 124456678999999999988443
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.074 Score=46.04 Aligned_cols=54 Identities=17% Similarity=0.295 Sum_probs=42.2
Q ss_pred CEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEE
Q 001248 587 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA 646 (1114)
Q Consensus 587 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd 646 (1114)
+.|++|++|..|++|+-. +.+..+... ..+.+++-... ..++.+..+|+|-+|+
T Consensus 16 ~eLlvGs~D~~IRvf~~~--e~~~Ei~e~---~~v~~L~~~~~-~~F~Y~l~NGTVGvY~ 69 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGD--EIVAEITET---DKVTSLCSLGG-GRFAYALANGTVGVYD 69 (111)
T ss_pred ceEEEecCCcEEEEEeCC--cEEEEEecc---cceEEEEEcCC-CEEEEEecCCEEEEEe
Confidence 679999999999999854 566666543 34777777766 5688899999999996
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.99 Score=49.60 Aligned_cols=111 Identities=21% Similarity=0.272 Sum_probs=58.7
Q ss_pred CceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCC----CCeE
Q 001248 360 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD----GSLF 435 (1114)
Q Consensus 360 ~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd----g~~l 435 (1114)
..+.|+|.|||+ ++++ ...|.|++++ ..+.... .+ -++ . .+..........++|+|+ +.+.
T Consensus 3 ~P~~~a~~pdG~-l~v~-e~~G~i~~~~-~~g~~~~--~v--~~~-------~-~v~~~~~~gllgia~~p~f~~n~~lY 67 (331)
T PF07995_consen 3 NPRSMAFLPDGR-LLVA-ERSGRIWVVD-KDGSLKT--PV--ADL-------P-EVFADGERGLLGIAFHPDFASNGYLY 67 (331)
T ss_dssp SEEEEEEETTSC-EEEE-ETTTEEEEEE-TTTEECE--EE--EE--------T-TTBTSTTBSEEEEEE-TTCCCC-EEE
T ss_pred CceEEEEeCCCc-EEEE-eCCceEEEEe-CCCcCcc--ee--ccc-------c-cccccccCCcccceeccccCCCCEEE
Confidence 468999999998 4554 6699999999 4444311 00 000 0 134455668899999994 4444
Q ss_pred EEEeCC--------CeEEEEEccCC-cee---eeeE-eec---cccCCeeEEEecCCCCeeEEEEec
Q 001248 436 GVAYSR--------HIVQIYSYHGG-DEV---RQHL-EID---AHVGGVNDIAFSHPNKQLCVITCG 486 (1114)
Q Consensus 436 as~~~d--------g~i~iwd~~~~-~~~---~~~~-~l~---~h~~~V~~v~~s~d~~~~~l~s~~ 486 (1114)
++.+.. ..|.-|....+ ..+ ..+. .+. .....-..|+|.|||. |++.+|+
T Consensus 68 v~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~-LYvs~G~ 133 (331)
T PF07995_consen 68 VYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK-LYVSVGD 133 (331)
T ss_dssp EEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE-EEEEEB-
T ss_pred EEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc-EEEEeCC
Confidence 443321 23555555544 111 1111 111 1233456799999995 3555554
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.064 Score=63.75 Aligned_cols=99 Identities=18% Similarity=0.249 Sum_probs=69.8
Q ss_pred EEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCC
Q 001248 373 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG 452 (1114)
Q Consensus 373 ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~ 452 (1114)
.++.|+..|.|-..|+.+.-... .| -..-.++|++++|+.||++++.|-.+|.|.+||+..+
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~-----~~-------------ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~ 162 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPL-----HQ-------------NERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA 162 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchh-----hc-------------CCccCCcceeeEecCCCceeccccCCCcEEEEEccCC
Confidence 48889999999988887531100 00 1123469999999999999999999999999999998
Q ss_pred ceeeeeEeeccccCC---eeEEEecCCCCeeEEEEecCCCCEEEEeC
Q 001248 453 DEVRQHLEIDAHVGG---VNDIAFSHPNKQLCVITCGDDKTIKVWDA 496 (1114)
Q Consensus 453 ~~~~~~~~l~~h~~~---V~~v~~s~d~~~~~l~s~~~d~~i~iwd~ 496 (1114)
+.++. +..|..+ |..+.+..++. .++++...|. +|.+
T Consensus 163 k~l~~---i~e~~ap~t~vi~v~~t~~nS--~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 163 KILKV---ITEHGAPVTGVIFVGRTSQNS--KLLTSDTGGS--FWKL 202 (1206)
T ss_pred cceee---eeecCCccceEEEEEEeCCCc--EEEEccCCCc--eEEE
Confidence 87763 4444443 44444455555 5788877776 5654
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.037 Score=60.34 Aligned_cols=144 Identities=10% Similarity=0.107 Sum_probs=99.6
Q ss_pred EEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCE--E-----EEEeCCCcEEEEeCCCCccccccccccCC
Q 001248 874 IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNV--L-----VSSGADSQLCVWSSDGWEKQKNRFLQIPT 946 (1114)
Q Consensus 874 ~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~--l-----~s~s~D~~v~iwd~~~~~~~~~~~~~~~~ 946 (1114)
+|..+..-..++-.|++.|+.+..+.-|.+ |+-+.+.|+++. | +.|-.|..|.-||..-.... .+...+
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~---kl~~~q 423 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN---KLAVVQ 423 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc---eeeeee
Confidence 445555667899999999999999998877 888889887542 2 23556778999998743321 222222
Q ss_pred CCCC-CCCCceEEEEccCCcEEEEEeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEc
Q 001248 947 GRTP-TAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1024 (1114)
Q Consensus 947 ~~~~-~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~ 1024 (1114)
++.- ....-.|.+-..+|..++.+.+|.|++||- .+...++.. ++-..+|..+..+.||++|+..+ +.++.+-++
T Consensus 424 ~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAl-PgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTAL-PGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred ccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcc-cccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 2221 112335666666776666689999999998 555544443 26688999999999999988665 667777665
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.55 E-value=2.9 Score=50.42 Aligned_cols=112 Identities=11% Similarity=0.021 Sum_probs=74.0
Q ss_pred EEEEccCCcEEEEEeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEE--EEcCCCeeeEEeC
Q 001248 957 RVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCV--FSAANLKLRCRIN 1034 (1114)
Q Consensus 957 ~v~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~v--wd~~~~~~~~~~~ 1034 (1114)
-.+..|-..++.++....+++||+-+.+..+......-...|+++++ .+..+++|...-.|.. |+-...+++. +.
T Consensus 938 v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~-fa 1014 (1205)
T KOG1898|consen 938 VGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIV-FA 1014 (1205)
T ss_pred ceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEE-Ee
Confidence 35667777788888888999999988887776654333567777776 5667888876655555 4444444443 32
Q ss_pred CCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1035 PSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1035 ~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
....|.. |. ++.+. |-+.++.++.=|++.+-+++..-
T Consensus 1015 -dD~~pR~-----Vt--~~~~l--D~~tvagaDrfGNi~~vR~P~d~ 1051 (1205)
T KOG1898|consen 1015 -DDPVPRH-----VT--ALELL--DYDTVAGADRFGNIAVVRIPPDV 1051 (1205)
T ss_pred -CCCccce-----ee--EEEEe--cCCceeeccccCcEEEEECCCcc
Confidence 1222221 33 44444 56789999999999999886644
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=2.3 Score=51.90 Aligned_cols=196 Identities=10% Similarity=0.034 Sum_probs=100.9
Q ss_pred CCccEEEEeeCCCEEEEEeC--C----eEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeC-C-----CcEEE
Q 001248 819 EAVPCFALSKNDSYVMSASG--G----KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-D-----SSIQI 886 (1114)
Q Consensus 819 ~~v~~v~~s~d~~~l~~~~d--g----~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~-d-----g~v~i 886 (1114)
-.+..+.+||||++|+.+.| | .|++.|+.++..+...-... -..++|++ |++.|+.... + ..|+.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~-D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWAN-DSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEee-CCCEEEEEEecCCCCCCCEEEE
Confidence 34567889999999998863 3 48899998876433221111 14699999 6655544432 2 36888
Q ss_pred EEcccc--eEEEeecccccCee-EEEEcCCCCEEEEEeC---CCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEE
Q 001248 887 YNVRVD--EVKSKLKGHSKRIT-GLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF 960 (1114)
Q Consensus 887 wd~~~~--~~~~~l~~h~~~V~-~l~~s~d~~~l~s~s~---D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~f 960 (1114)
+++.++ +....+........ .+..+.|+++++..+. ++.+.+|+...........+....+ ....+.
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~- 276 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKD------HEYSLD- 276 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCC------CEEEEE-
Confidence 888887 33333433222233 3344558887664433 3568888854311111111111111 112222
Q ss_pred ccCCcEEEEEeC----CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcC
Q 001248 961 HQDQIHFLVVHE----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA 1025 (1114)
Q Consensus 961 spdg~~l~~~~d----~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~ 1025 (1114)
+..+.+++.... ..|...++.+......+........|..+.++ .+.++++...+|.-+++-++
T Consensus 277 ~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 277 HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence 223333333322 23444454421222233322123468888887 33456667677775555443
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.5 Score=49.59 Aligned_cols=149 Identities=17% Similarity=0.107 Sum_probs=89.9
Q ss_pred CccEEEEeeCCCEEEEEe--CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE-cccceEE-
Q 001248 820 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN-VRVDEVK- 895 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd-~~~~~~~- 895 (1114)
.+.+.++++|++.++... ++.-.||-...+.....+. ....++.-.|++ ++.+.+....+...+++. ..+++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCccee
Confidence 688899999999888765 5443444333333333322 233788889999 688887777777777774 3333221
Q ss_pred Eeecc--cccCeeEEEEcCCCCEEEEEe---CCCcEEEEeCCCCccccccccccCCC-CCCCCCCceEEEEccCCcEEEE
Q 001248 896 SKLKG--HSKRITGLAFSHALNVLVSSG---ADSQLCVWSSDGWEKQKNRFLQIPTG-RTPTAQSDTRVQFHQDQIHFLV 969 (1114)
Q Consensus 896 ~~l~~--h~~~V~~l~~s~d~~~l~s~s---~D~~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~i~~v~fspdg~~l~~ 969 (1114)
..+.. -...|+++.+||||..+|... .++.|.+=-+..........+..... .......+..+.|.+++.+++.
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~ 182 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVL 182 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEE
Confidence 11211 112899999999999988665 35777777665433221111111100 0011246789999999998887
Q ss_pred E
Q 001248 970 V 970 (1114)
Q Consensus 970 ~ 970 (1114)
+
T Consensus 183 ~ 183 (253)
T PF10647_consen 183 G 183 (253)
T ss_pred e
Confidence 4
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0099 Score=40.59 Aligned_cols=31 Identities=23% Similarity=0.385 Sum_probs=28.9
Q ss_pred CCCcCeeEEEECCCCCEEEEEEcCCeEEEEE
Q 001248 993 ESSAPITHATFSCDSQLVYACFLDATVCVFS 1023 (1114)
Q Consensus 993 ~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd 1023 (1114)
.|...|.++.|.+++.++++++.|+.+++|+
T Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 6788999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.58 Score=47.94 Aligned_cols=170 Identities=7% Similarity=0.048 Sum_probs=112.8
Q ss_pred ecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEE
Q 001248 898 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLA 976 (1114)
Q Consensus 898 l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~ 976 (1114)
+.|-...|.++.|+|+.+.|++......-.||=...|+.....++.... ....+.+..+|+++++ -.++.+.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~-------DpE~Ieyig~n~fvi~dER~~~l~ 153 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS-------DPETIEYIGGNQFVIVDERDRALY 153 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccC-------ChhHeEEecCCEEEEEehhcceEE
Confidence 4555566999999999999998888777777766666655544444332 3467888899999888 4788888
Q ss_pred EEEcCCCceeeee-----ec--CCC-CcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCC-C--
Q 001248 977 IFETTKLECVKQW-----VP--RES-SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVS-S-- 1045 (1114)
Q Consensus 977 iwd~~~~~~~~~~-----~~--~~h-~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~-~-- 1045 (1114)
++.+.....+..+ .. ..+ +...-.++|+|..+.|+.+-+-.-+.||.+..+.-.-... ....+. .
T Consensus 154 ~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~----~~~~~~~~~~ 229 (316)
T COG3204 154 LFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVH----ASLDPTADRD 229 (316)
T ss_pred EEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccc----cccCcccccc
Confidence 8887665332221 11 122 5567889999999999999888777777766333111111 000100 0
Q ss_pred ---CCccceEEEecCCCCCeEEEEeCCCcEEEEeccCC
Q 001248 1046 ---SNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1080 (1114)
Q Consensus 1046 ---~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~ 1080 (1114)
..++ .+.|.+..+.+||-+.+++.+...+....
T Consensus 230 ~f~~DvS--gl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 230 LFVLDVS--GLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred eEeeccc--cceecCCCCcEEEEecCCceEEEEecCCC
Confidence 0133 67788777888888888888887776554
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.87 Score=50.05 Aligned_cols=240 Identities=15% Similarity=0.138 Sum_probs=120.2
Q ss_pred CccEEEEeeCCCEEEEEeCCeEEEEEcCCCcc---ccc----cCCCCCCeEEEEEecC---CCcEEEEEeCC--------
Q 001248 820 AVPCFALSKNDSYVMSASGGKISLFNMMTFKT---MAT----FMPPPPAATFLAFHPQ---DNNIIAIGMDD-------- 881 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~---~~~----~~~~~~~i~~l~~sp~---d~~~la~g~~d-------- 881 (1114)
..++++|.|||+++++-..|.|++++ ..+.. +.. ..........++|+|+ ++.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 35789999999888876699999999 33332 111 2234456899999992 24444444421
Q ss_pred CcEEEEEcccc-------eEE-Eeecc---cccCeeEEEEcCCCCEEEEEeCCCc-------------EEEEeCCCCccc
Q 001248 882 SSIQIYNVRVD-------EVK-SKLKG---HSKRITGLAFSHALNVLVSSGADSQ-------------LCVWSSDGWEKQ 937 (1114)
Q Consensus 882 g~v~iwd~~~~-------~~~-~~l~~---h~~~V~~l~~s~d~~~l~s~s~D~~-------------v~iwd~~~~~~~ 937 (1114)
..|.-|.+..+ +.+ ..+.. ..-.-..|+|.|||.+.++.+..+. |.-.+.+. ...
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG-~~p 160 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDG-SIP 160 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTS-SB-
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccC-cCC
Confidence 23444444332 111 12221 1122356999999987777665432 22222221 000
Q ss_pred ccccc---------ccCCCCCCCCCCceEEEEccC-CcEEEE--EeCCeEEEEEcCCCcee-------------------
Q 001248 938 KNRFL---------QIPTGRTPTAQSDTRVQFHQD-QIHFLV--VHETQLAIFETTKLECV------------------- 986 (1114)
Q Consensus 938 ~~~~~---------~~~~~~~~~~~~i~~v~fspd-g~~l~~--~~d~~i~iwd~~~~~~~------------------- 986 (1114)
..... ....|+ .....++|.|. |.+.++ +.+..=.|..+..+.-.
T Consensus 161 ~dnP~~~~~~~~~~i~A~Gl----RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~ 236 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGL----RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDA 236 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE------SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTG
T ss_pred CCCccccCCCceEEEEEeCC----CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccc
Confidence 00000 000011 13468899999 877776 44443333333332110
Q ss_pred --------eeeecCCCCcCeeEEEECC-------CCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccce
Q 001248 987 --------KQWVPRESSAPITHATFSC-------DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPL 1051 (1114)
Q Consensus 987 --------~~~~~~~h~~~v~~l~~s~-------dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1051 (1114)
..+.. .+...++.+.|-. .|.++++.-..+.|....+.++..+.... ..+ . .....++
T Consensus 237 ~~~~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~-~---~~~~r~~ 309 (331)
T PF07995_consen 237 PSCPGFVPPVFAY-PPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEE--EFL-G---GFGGRPR 309 (331)
T ss_dssp SS-TTS---SEEE-TTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE--EEC-T---TSSS-EE
T ss_pred cCCCCcCccceee-cCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceE--Ecc-c---cCCCCce
Confidence 00111 1235666777753 44566655556778888887554332221 111 1 1112466
Q ss_pred EEEecCCCCCeEEEEeCCCcEE
Q 001248 1052 VIAAHPQEPNEFALGLSDGGVH 1073 (1114)
Q Consensus 1052 ~~~~~~~d~~~l~s~~~Dg~v~ 1073 (1114)
.+++.| ||.+.++.+.+|.|+
T Consensus 310 ~v~~~p-DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 310 DVAQGP-DGALYVSDDSDGKIY 330 (331)
T ss_dssp EEEEET-TSEEEEEE-TTTTEE
T ss_pred EEEEcC-CCeEEEEECCCCeEe
Confidence 899999 688888888888874
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.043 Score=65.09 Aligned_cols=101 Identities=16% Similarity=0.302 Sum_probs=75.6
Q ss_pred CCCEEEEEe-CCeEEEEEcCCC-ccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCee
Q 001248 829 NDSYVMSAS-GGKISLFNMMTF-KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT 906 (1114)
Q Consensus 829 d~~~l~~~~-dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~ 906 (1114)
.+-.++.|+ .|.+-..|+... .....-....++|++++|+. +|.+++.|-.+|.|.+||+..++.++.+..|..+.+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 455678887 577888887542 11122223457899999999 999999999999999999999999999888877777
Q ss_pred EEEE---cCCCCEEEEEeCCCcEEEEeCC
Q 001248 907 GLAF---SHALNVLVSSGADSQLCVWSSD 932 (1114)
Q Consensus 907 ~l~~---s~d~~~l~s~s~D~~v~iwd~~ 932 (1114)
++-+ ..++..+.++..-|. +|++.
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 6654 356667888877775 66654
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.83 Score=46.86 Aligned_cols=202 Identities=13% Similarity=0.158 Sum_probs=120.8
Q ss_pred cccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccc-cCCCCCCCCCccEEEEee
Q 001248 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN-DVTDSNPEEAVPCFALSK 828 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~-~~~~~~~~~~v~~v~~s~ 828 (1114)
-...++++.|+|+.+.|++......-.||=- .+|.++.. .+.+ -.....+.+..
T Consensus 84 ~~~nvS~LTynp~~rtLFav~n~p~~iVElt----------------------~~GdlirtiPL~g---~~DpE~Ieyig 138 (316)
T COG3204 84 ETANVSSLTYNPDTRTLFAVTNKPAAIVELT----------------------KEGDLIRTIPLTG---FSDPETIEYIG 138 (316)
T ss_pred ccccccceeeCCCcceEEEecCCCceEEEEe----------------------cCCceEEEecccc---cCChhHeEEec
Confidence 4455999999999999999888766555421 13443332 2222 34466788888
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCccccc----------cCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccce---E
Q 001248 829 NDSYVMSAS-GGKISLFNMMTFKTMAT----------FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---V 894 (1114)
Q Consensus 829 d~~~l~~~~-dg~i~iwd~~~~~~~~~----------~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~---~ 894 (1114)
+|+++++-- ++.+.++.+.....+.. ....+.....+||+| ..+.|..+-+-.-+.||.+..+. .
T Consensus 139 ~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~ 217 (316)
T COG3204 139 GNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLS 217 (316)
T ss_pred CCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCcccc
Confidence 888888776 78888887765432211 111245678899999 55566667677777777765322 1
Q ss_pred EEeecccc-------cCeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcE
Q 001248 895 KSKLKGHS-------KRITGLAFSHA-LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 966 (1114)
Q Consensus 895 ~~~l~~h~-------~~V~~l~~s~d-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~ 966 (1114)
+.....+. ..|.++.|.+. +.+|+-+.+++.+...|....-........-..+-.........++..++|..
T Consensus 218 ~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~l 297 (316)
T COG3204 218 VHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNL 297 (316)
T ss_pred cccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCE
Confidence 11111222 34777888764 56677777788888888776432211122222222222224467888888887
Q ss_pred EEEEeCCeEEE
Q 001248 967 FLVVHETQLAI 977 (1114)
Q Consensus 967 l~~~~d~~i~i 977 (1114)
.+++.-+-.+.
T Consensus 298 YIvSEPnlfy~ 308 (316)
T COG3204 298 YIVSEPNLFYR 308 (316)
T ss_pred EEEecCCccee
Confidence 77764443333
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.73 Score=45.21 Aligned_cols=140 Identities=16% Similarity=0.184 Sum_probs=80.8
Q ss_pred cCCeeEEEecCCCCeeEEEEec-CC---------CCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCe
Q 001248 465 VGGVNDIAFSHPNKQLCVITCG-DD---------KTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGK 534 (1114)
Q Consensus 465 ~~~V~~v~~s~d~~~~~l~s~~-~d---------~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~ 534 (1114)
....+.-..+|+|+ ++ .|. .| |.++.|-. +..+..+...-+--+.++|..+ ...+-++-+.+-.
T Consensus 108 knR~NDgkvdP~Gr--yy-~GtMad~~~~le~~~g~Ly~~~~--~h~v~~i~~~v~IsNgl~Wd~d-~K~fY~iDsln~~ 181 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGR--YY-GGTMADFGDDLEPIGGELYSWLA--GHQVELIWNCVGISNGLAWDSD-AKKFYYIDSLNYE 181 (310)
T ss_pred hcccccCccCCCCc--ee-eeeeccccccccccccEEEEecc--CCCceeeehhccCCcccccccc-CcEEEEEccCceE
Confidence 34566777889999 32 222 11 23333321 1112222222233345677633 2245566677888
Q ss_pred EEEEEcCCCCCeeeecCCCCeeEEEE-------EecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcc
Q 001248 535 IKAWLYDNLGSRVDYEAPGRWCTTMA-------YSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 607 (1114)
Q Consensus 535 i~~wd~~~~~~~~~~~~~~~~v~~~~-------~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 607 (1114)
|..||.+-...... ....+..+. .-||| ++++.+|++.++.-..++|...|..+|+
T Consensus 182 V~a~dyd~~tG~~s---nr~~i~dlrk~~~~e~~~PDG--------------m~ID~eG~L~Va~~ng~~V~~~dp~tGK 244 (310)
T KOG4499|consen 182 VDAYDYDCPTGDLS---NRKVIFDLRKSQPFESLEPDG--------------MTIDTEGNLYVATFNGGTVQKVDPTTGK 244 (310)
T ss_pred EeeeecCCCccccc---CcceeEEeccCCCcCCCCCCc--------------ceEccCCcEEEEEecCcEEEEECCCCCc
Confidence 88888543221110 001111111 12333 3456678888888999999999999999
Q ss_pred eEEEeccCCCCCCcCeEEEcCC
Q 001248 608 LLTSIDADGGLPASPRIRFNKD 629 (1114)
Q Consensus 608 ~~~~~~~~~~~~~v~~~~~s~d 629 (1114)
.+..+..+ ...+++++|-..
T Consensus 245 ~L~eiklP--t~qitsccFgGk 264 (310)
T KOG4499|consen 245 ILLEIKLP--TPQITSCCFGGK 264 (310)
T ss_pred EEEEEEcC--CCceEEEEecCC
Confidence 99999877 568999999753
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.19 E-value=3.1 Score=47.05 Aligned_cols=156 Identities=12% Similarity=0.027 Sum_probs=85.8
Q ss_pred CCeeEEEecCCCCeeEEEEec--CCCCEEEEeCCCCcceeEeeccccCEEEEeeccCC--CceEEEEEecCCeEEEEEcC
Q 001248 466 GGVNDIAFSHPNKQLCVITCG--DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE--NIQFIFSTALDGKIKAWLYD 541 (1114)
Q Consensus 466 ~~V~~v~~s~d~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~~l~s~~~d~~i~~wd~~ 541 (1114)
.+|..++|. ||++ +++|.- .+|.+++=| .+.+. .-..|..++|.+.. +...+.+....+.|.+|.+.
T Consensus 20 HPvhGlaWT-DGkq-VvLT~L~l~~gE~kfGd---s~viG----qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQ-VVLTDLQLHNGEPKFGD---SKVIG----QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred ccccceEec-CCCE-EEEEeeeeeCCccccCC---ccEee----ccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 478999998 7776 455542 223333222 22233 33468888887652 22357777888999999875
Q ss_pred CCCCee--eecCCCCee-EEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcc--eEEEeccCC
Q 001248 542 NLGSRV--DYEAPGRWC-TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ--LLTSIDADG 616 (1114)
Q Consensus 542 ~~~~~~--~~~~~~~~v-~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~ 616 (1114)
...... .+....-.+ ..+-.-|.| +.|+|....|++-.....-.+++..... ....++..
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQG--------------CVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~- 155 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQG--------------CVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTS- 155 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCc--------------ccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCC-
Confidence 321111 000000000 011112222 4578887777776554444455554333 33334333
Q ss_pred CCCCcCeEEEcCCCCEEEEEeCC-CcEEEEEc
Q 001248 617 GLPASPRIRFNKDGCLLAVSTND-NGIKILAT 647 (1114)
Q Consensus 617 ~~~~v~~~~~s~d~~~l~~~~~d-g~i~iwd~ 647 (1114)
+.|.|.+|.+||+.|+++-.. =.-++||-
T Consensus 156 --G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 156 --GLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred --ceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 469999999999988876543 34567774
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.41 Score=56.74 Aligned_cols=228 Identities=12% Similarity=0.065 Sum_probs=114.8
Q ss_pred eEEEEEcCCCccc--cccCCCCCCeEEEEEecCCCcEEEEEeCC------CcEEEEEcccce--EEEeecccccCeeEEE
Q 001248 840 KISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDD------SSIQIYNVRVDE--VKSKLKGHSKRITGLA 909 (1114)
Q Consensus 840 ~i~iwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~la~g~~d------g~v~iwd~~~~~--~~~~l~~h~~~V~~l~ 909 (1114)
.+..||..+.+.. ..+..... -.+++. - ++.+.++|+.+ ..+..||..+++ .+..+.........++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~-~~~~a~-l-~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~ 349 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHII-NYASAI-V-DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV 349 (557)
T ss_pred CEEEEeCCCCeEEECCCCCcccc-ceEEEE-E-CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE
Confidence 4666777654322 22221111 122333 2 67888888854 347888887653 2222221112222222
Q ss_pred EcCCCCEEEEEeCCC-----cEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEe-C-----------
Q 001248 910 FSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH-E----------- 972 (1114)
Q Consensus 910 ~s~d~~~l~s~s~D~-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~-d----------- 972 (1114)
-+|+..+.||.++ ++..||..+++ +..+........ . .+ +..-+|+..+.|+ +
T Consensus 350 --~~g~IYviGG~~~~~~~~sve~Ydp~~~~---W~~~~~mp~~r~---~-~~-~~~~~g~IYviGG~~~~~~~~~~~~~ 419 (557)
T PHA02713 350 --IDDTIYAIGGQNGTNVERTIECYTMGDDK---WKMLPDMPIALS---S-YG-MCVLDQYIYIIGGRTEHIDYTSVHHM 419 (557)
T ss_pred --ECCEEEEECCcCCCCCCceEEEEECCCCe---EEECCCCCcccc---c-cc-EEEECCEEEEEeCCCccccccccccc
Confidence 3678888888764 47889887642 222222111110 1 11 1223566666642 2
Q ss_pred ------------CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcC------CeEEEEEcCC-CeeeEEe
Q 001248 973 ------------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD------ATVCVFSAAN-LKLRCRI 1033 (1114)
Q Consensus 973 ------------~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D------g~I~vwd~~~-~~~~~~~ 1033 (1114)
..+..||..+.+-...-... ......-+..-+|+..+.|+.+ ..|..||..+ .+-...
T Consensus 420 ~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~--~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~- 496 (557)
T PHA02713 420 NSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW--TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELI- 496 (557)
T ss_pred ccccccccccccceEEEECCCCCeEeecCCCC--cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEc-
Confidence 24777887766543221110 1111111223356666667654 2467888887 443211
Q ss_pred CCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCC--cEEEEeccCCCCcccCCCCCCCCCC
Q 001248 1034 NPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG--GVHVFEPLESEGKWGVPPPVDNGST 1095 (1114)
Q Consensus 1034 ~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg--~v~vW~i~~~~~~~~~~~~~~~~~~ 1095 (1114)
. .++.. .....++.. ++.+.++|+.|| ++..+|+.+.+ |..-.|....++
T Consensus 497 ~---~m~~~-----r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~--W~~~~~~~~~~~ 548 (557)
T PHA02713 497 T---TTESR-----LSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE--WNHICHQHSNSY 548 (557)
T ss_pred c---ccCcc-----cccceeEEE--CCEEEEEeeecceeehhhcCccccc--ccchhhhcCCce
Confidence 1 12211 111122222 578999999998 78888888866 877776554443
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.11 E-value=2.5 Score=45.14 Aligned_cols=158 Identities=11% Similarity=0.088 Sum_probs=80.1
Q ss_pred CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeC-CCCc
Q 001248 857 PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS-DGWE 935 (1114)
Q Consensus 857 ~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~-~~~~ 935 (1114)
.....+..+..++ ||++++++.......-||.-...=...-+.-+.+|.++.|+|++.+.+.+ ..|.|+.=+. ...+
T Consensus 142 ~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 142 ETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred CCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence 3446788888888 89999888655555577754211112223346789999999998776644 7888887761 2211
Q ss_pred cccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCCceeeeee-cCCCCcCeeEEEECCCCCEEEEEE
Q 001248 936 KQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV-PRESSAPITHATFSCDSQLVYACF 1014 (1114)
Q Consensus 936 ~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~-~~~h~~~v~~l~~s~dg~~l~s~s 1014 (1114)
.-......... ..-.+..++|.+++...|++..|.+.. ....|+.=..-. ...-...++.+.|.++.+-++.|
T Consensus 220 ~w~~~~~~~~~----~~~~~ld~a~~~~~~~wa~gg~G~l~~-S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG- 293 (302)
T PF14870_consen 220 TWSEPIIPIKT----NGYGILDLAYRPPNEIWAVGGSGTLLV-STDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG- 293 (302)
T ss_dssp EE---B-TTSS------S-EEEEEESSSS-EEEEESTT-EEE-ESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--
T ss_pred ccccccCCccc----CceeeEEEEecCCCCEEEEeCCccEEE-eCCCCccceECccccCCCCceEEEEEcCCCceEEEC-
Confidence 10010111111 112478899999999999888885543 344444322211 11225568899998665555544
Q ss_pred cCCeEEEE
Q 001248 1015 LDATVCVF 1022 (1114)
Q Consensus 1015 ~Dg~I~vw 1022 (1114)
.+|.+--|
T Consensus 294 ~~G~ll~~ 301 (302)
T PF14870_consen 294 QDGVLLRY 301 (302)
T ss_dssp STTEEEEE
T ss_pred CCcEEEEe
Confidence 68877655
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.022 Score=55.49 Aligned_cols=104 Identities=15% Similarity=0.203 Sum_probs=74.0
Q ss_pred CCEEEEEe-CCeEEEEEcCCC-ccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccc-cCee
Q 001248 830 DSYVMSAS-GGKISLFNMMTF-KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS-KRIT 906 (1114)
Q Consensus 830 ~~~l~~~~-dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~-~~V~ 906 (1114)
+..+++|. +|.|.+|+..-. .....+......|.++.-.-+++.+..++..||.||.|+..-++.+...-.|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 34566666 999999987632 22222222333444443333356689999999999999999999888888887 6677
Q ss_pred EEEEcCCCCEEEEE--eCCCcEEEEeCCC
Q 001248 907 GLAFSHALNVLVSS--GADSQLCVWSSDG 933 (1114)
Q Consensus 907 ~l~~s~d~~~l~s~--s~D~~v~iwd~~~ 933 (1114)
.+..+..++.++++ |.|..++.|+++.
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 77777777888887 8888888888876
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.26 Score=42.78 Aligned_cols=102 Identities=16% Similarity=0.126 Sum_probs=64.1
Q ss_pred ceEEEEc---CCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEE
Q 001248 361 PMSMDFH---PVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 437 (1114)
Q Consensus 361 v~~v~~s---pdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 437 (1114)
|+++++. .||+.-|++|+.|..|+||+=+. .+.+ ....+.|.+++-... ..++.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~E--------------------i~e~~~v~~L~~~~~-~~F~Y 58 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVAE--------------------ITETDKVTSLCSLGG-GRFAY 58 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEEE--------------------EecccceEEEEEcCC-CEEEE
Confidence 4555554 46666699999999999998542 2221 123457888887766 56888
Q ss_pred EeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEec---CCCCeeEEEEecCCCCEE
Q 001248 438 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS---HPNKQLCVITCGDDKTIK 492 (1114)
Q Consensus 438 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s---~d~~~~~l~s~~~d~~i~ 492 (1114)
+..+|+|-+|+-.. +..+ ... ...+.++++. .||.. -|++|-.+|.|-
T Consensus 59 ~l~NGTVGvY~~~~-RlWR----iKS-K~~~~~~~~~D~~gdG~~-eLI~GwsnGkve 109 (111)
T PF14783_consen 59 ALANGTVGVYDRSQ-RLWR----IKS-KNQVTSMAFYDINGDGVP-ELIVGWSNGKVE 109 (111)
T ss_pred EecCCEEEEEeCcc-eeee----ecc-CCCeEEEEEEcCCCCCce-EEEEEecCCeEE
Confidence 99999999997643 1121 222 2235555543 33433 578887777764
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.04 E-value=1.9 Score=52.63 Aligned_cols=210 Identities=13% Similarity=0.134 Sum_probs=116.5
Q ss_pred cEEEEEeCCCcEEEEEcccceEEEeecccccC--------eeEEEEc----------------CCCCEEEEEeCCCcEEE
Q 001248 873 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR--------ITGLAFS----------------HALNVLVSSGADSQLCV 928 (1114)
Q Consensus 873 ~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~--------V~~l~~s----------------~d~~~l~s~s~D~~v~i 928 (1114)
..|..++.++.|+-.|..+|+.+.++...... ...+++- .++..++.++.|+.|.-
T Consensus 195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA 274 (764)
T TIGR03074 195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA 274 (764)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence 35666777888999999999888776532211 1223332 13457888889999999
Q ss_pred EeCCCCccccccc------cccCCCCCCCCCCceEEEEcc---CCcEEEEEe----------CCeEEEEEcCCCceeeee
Q 001248 929 WSSDGWEKQKNRF------LQIPTGRTPTAQSDTRVQFHQ---DQIHFLVVH----------ETQLAIFETTKLECVKQW 989 (1114)
Q Consensus 929 wd~~~~~~~~~~~------~~~~~~~~~~~~~i~~v~fsp---dg~~l~~~~----------d~~i~iwd~~~~~~~~~~ 989 (1114)
.|.++++.....- +....+... ..-..+.-+| ++..++.+. +|.|+-+|.++|+.+-.+
T Consensus 275 LDA~TGk~~W~fg~~G~vdl~~~~g~~~--~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 275 LDADTGKLCEDFGNNGTVDLTAGMGTTP--PGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EECCCCCEEEEecCCCceeeecccCcCC--CcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 9988876542100 000000000 0000111112 344333321 578999999999988776
Q ss_pred ecCCC---------------CcCe-eEEEECCCCCEEEEEE------------------cCCeEEEEEcCCCeeeEEeCC
Q 001248 990 VPRES---------------SAPI-THATFSCDSQLVYACF------------------LDATVCVFSAANLKLRCRINP 1035 (1114)
Q Consensus 990 ~~~~h---------------~~~v-~~l~~s~dg~~l~s~s------------------~Dg~I~vwd~~~~~~~~~~~~ 1035 (1114)
..... ...+ ..+++.++..+++.+. ..++|.-.|.+||+..-.++.
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 53100 0111 3345555555544322 134677789999998876652
Q ss_pred -CcccCCCCCCCCccceEEEecCCCCC---eEEEEeCCCcEEEEeccCCCCcccC
Q 001248 1036 -SAYLPAGVSSSNVHPLVIAAHPQEPN---EFALGLSDGGVHVFEPLESEGKWGV 1086 (1114)
Q Consensus 1036 -~~~~~~~~~~~~v~~~~~~~~~~d~~---~l~s~~~Dg~v~vW~i~~~~~~~~~ 1086 (1114)
++..-+- +..-.++-+.....+++ .++.++.+|.+++.|-.+|+..|..
T Consensus 433 ~~hD~WD~--D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 433 VHHDLWDM--DVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred cCCccccc--cccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 1111100 11111222333221453 7999999999999999999977764
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.9 Score=53.79 Aligned_cols=234 Identities=9% Similarity=0.085 Sum_probs=128.2
Q ss_pred eCCCEEEEEe-C------CeEEEEEcCCCcccc--ccCCCCCCeEEEEEecCCCcEEEEEeCC-C-----cEEEEEcccc
Q 001248 828 KNDSYVMSAS-G------GKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDD-S-----SIQIYNVRVD 892 (1114)
Q Consensus 828 ~d~~~l~~~~-d------g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~la~g~~d-g-----~v~iwd~~~~ 892 (1114)
..+..+++|+ + ..+..||..++.... .+. ....-.++++. ++.+.++|+.| | .+..||..++
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCC
Confidence 3455666665 4 358888888764322 222 22234455555 57899999999 3 6778888765
Q ss_pred e--EEEeecccccCeeEEEEcCCCCEEEEEeCCCc-----EEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCc
Q 001248 893 E--VKSKLKGHSKRITGLAFSHALNVLVSSGADSQ-----LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI 965 (1114)
Q Consensus 893 ~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~-----v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~ 965 (1114)
+ .+..+...........+ +|.+.|+||.||. +..||..+.+ +......... .-..-...-+|+
T Consensus 360 ~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~---W~~va~m~~~-----r~~~gv~~~~g~ 429 (571)
T KOG4441|consen 360 QWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNK---WTPVAPMLTR-----RSGHGVAVLGGK 429 (571)
T ss_pred ceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCc---ccccCCCCcc-----eeeeEEEEECCE
Confidence 4 33333333333322233 6888999999964 6677776633 2222211110 011222334566
Q ss_pred EEEE-EeC------CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCC-----eEEEEEcCCCeeeEEe
Q 001248 966 HFLV-VHE------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-----TVCVFSAANLKLRCRI 1033 (1114)
Q Consensus 966 ~l~~-~~d------~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg-----~I~vwd~~~~~~~~~~ 1033 (1114)
..++ |.+ ..+..||..+.+......... ...-..++ .-++...+.|+.|+ +|..||..+.+-...-
T Consensus 430 iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~-~R~~~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 430 LYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNT-RRSGFGVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA 507 (571)
T ss_pred EEEEcCcCCCccccceEEEEcCCCCceeecCCccc-ccccceEE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcc
Confidence 6666 323 358889988776543322211 11111122 33677778888776 3777888777655331
Q ss_pred CCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCC-----cEEEEeccCCCCcccCCCC
Q 001248 1034 NPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG-----GVHVFEPLESEGKWGVPPP 1089 (1114)
Q Consensus 1034 ~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg-----~v~vW~i~~~~~~~~~~~~ 1089 (1114)
. +... .....++-. ++.+.++|+.|| +|..||..+.+ |....+
T Consensus 508 ~----m~~~-----rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~--W~~~~~ 555 (571)
T KOG4441|consen 508 P----MTSP-----RSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT--WTEVTE 555 (571)
T ss_pred c----Cccc-----cccccEEEE--CCEEEEEecccCccccceeEEcCCCCCc--eeeCCC
Confidence 1 1111 111122222 577888898887 77788877766 555444
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=95.93 E-value=1.7 Score=44.66 Aligned_cols=185 Identities=8% Similarity=0.103 Sum_probs=113.4
Q ss_pred ccEEEEeeCCCEEEEEe-C--CeEEEEEcCCCccccccCCCCC-CeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEE
Q 001248 821 VPCFALSKNDSYVMSAS-G--GKISLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 896 (1114)
Q Consensus 821 v~~v~~s~d~~~l~~~~-d--g~i~iwd~~~~~~~~~~~~~~~-~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~ 896 (1114)
...+.|..+|.++-+.+ - ..|+.+|+.+++......-... --..++.. ++++....-.++...+||..+.+.+.
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEEE
Confidence 44677878887777666 4 4699999999987655432221 12334444 45677777789999999999999888
Q ss_pred eecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCeE
Q 001248 897 KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQL 975 (1114)
Q Consensus 897 ~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~i 975 (1114)
++.- .+.=++++ .|++.|+.......+.++|.++.+......+. ....+ ...+.-+-+- +|...|=. ....|
T Consensus 125 ~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~--~~g~p-v~~LNELE~i-~G~IyANVW~td~I 197 (264)
T PF05096_consen 125 TFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVT--DNGRP-VSNLNELEYI-NGKIYANVWQTDRI 197 (264)
T ss_dssp EEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E--ETTEE----EEEEEEE-TTEEEEEETTSSEE
T ss_pred EEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEE--ECCEE-CCCcEeEEEE-cCEEEEEeCCCCeE
Confidence 8864 34557777 46777777766777999998875543322222 11111 1234555554 56555543 56778
Q ss_pred EEEEcCCCceeeeeecC----------CC---CcCeeEEEECCCCCEEEEEE
Q 001248 976 AIFETTKLECVKQWVPR----------ES---SAPITHATFSCDSQLVYACF 1014 (1114)
Q Consensus 976 ~iwd~~~~~~~~~~~~~----------~h---~~~v~~l~~s~dg~~l~s~s 1014 (1114)
...|..+|+....+... .+ ..-...||+.|+...|+..+
T Consensus 198 ~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 198 VRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 88899999887765321 01 34578999988777665554
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.4 Score=53.72 Aligned_cols=160 Identities=13% Similarity=0.156 Sum_probs=91.7
Q ss_pred CCCeEEEEEecCCCcEEEEEe--CCCcEEEEEcccceEEEeecccccCeeEEEEcCC----CCEEEEEeCCCcEEEEeCC
Q 001248 859 PPAATFLAFHPQDNNIIAIGM--DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA----LNVLVSSGADSQLCVWSSD 932 (1114)
Q Consensus 859 ~~~i~~l~~sp~d~~~la~g~--~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d----~~~l~s~s~D~~v~iwd~~ 932 (1114)
-.++..++|.. +.+.+.+.- .+|.+++=| .+.+..| ..|.++.|.|- -..|...-.-..|.||.+.
T Consensus 19 iHPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 19 IHPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred hccccceEecC-CCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 34688899984 444444332 344444322 1233333 45899999985 3345555667779999987
Q ss_pred CCcccccccc--ccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCE
Q 001248 933 GWEKQKNRFL--QIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL 1009 (1114)
Q Consensus 933 ~~~~~~~~~~--~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 1009 (1114)
.........+ +.-+-..+.+.-...+.|+|....|++ .....-.++++......-.... ...+.|.|.+|..||+.
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~R 169 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQR 169 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCE
Confidence 3322222222 211111111123367899999999998 4444434555543332222222 23778999999999999
Q ss_pred EEEEEc-CCeEEEEEcCCC
Q 001248 1010 VYACFL-DATVCVFSAANL 1027 (1114)
Q Consensus 1010 l~s~s~-Dg~I~vwd~~~~ 1027 (1114)
|+++-. .=.-+|||-...
T Consensus 170 LVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 170 LVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred EEEEeCCeEEEEEecCchh
Confidence 876543 334788986544
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=95.70 E-value=2.7 Score=46.16 Aligned_cols=221 Identities=13% Similarity=0.094 Sum_probs=90.8
Q ss_pred CCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccc-cccccCCCCCeeEEEEcCCCCeEEEE--eCC----
Q 001248 369 VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQ-AALVKDPGVSVNRVIWSPDGSLFGVA--YSR---- 441 (1114)
Q Consensus 369 dg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~h~~~V~~l~~spdg~~las~--~~d---- 441 (1114)
+.++|++-|-.++.|+|.|+.+.-..- .-.|+.+-. .... .-+-..| .+.|+ |+|+.++++ ..+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P-~l~KvIe~~---ev~~k~g~s~PH--T~Hcl---p~G~imIS~lGd~~G~g~ 156 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKP-RLHKVIEPE---EVFEKTGLSRPH--TVHCL---PDGRIMISALGDADGNGP 156 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS--EEEEEE-HH---HHHHHH-EEEEE--EEEE----SS--EEEEEEEETTS-S-
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCC-ceEeeeCHH---HHHhhcCCCCCc--eeeec---CCccEEEEeccCCCCCCC
Confidence 567666666688999999998532111 011111100 0000 0011122 34444 689888885 222
Q ss_pred CeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEec--------------------CCCCEEEEeCCCCcc
Q 001248 442 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG--------------------DDKTIKVWDATNGAK 501 (1114)
Q Consensus 442 g~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~--------------------~d~~i~iwd~~~~~~ 501 (1114)
|-+.+.|-++.+.......-.+...--+.+-|.|..+ +++|.. .-.++.+||+.+.+.
T Consensus 157 Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~n--vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~ 234 (461)
T PF05694_consen 157 GGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHN--VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKL 234 (461)
T ss_dssp -EEEEE-TTT--EEEE--SB-TT------EEEETTTT--EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEE
T ss_pred CcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCC--EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcE
Confidence 4577888776554432211111122345667777666 566643 135799999999999
Q ss_pred eeEeeccc--cCEEEEeeccCCCceEEEEEe-cCCeEEEEEc-CCCCCeeeecCCCCeeEEEEEec-CCC---eEEee--
Q 001248 502 QYIFEGHE--APVYSVCPHHKENIQFIFSTA-LDGKIKAWLY-DNLGSRVDYEAPGRWCTTMAYSA-DGT---RTYQG-- 571 (1114)
Q Consensus 502 ~~~~~~h~--~~v~~~~~~~~~~~~~l~s~~-~d~~i~~wd~-~~~~~~~~~~~~~~~v~~~~~s~-~g~---~~~~~-- 571 (1114)
++++.--. .-...+.|..+++..+-++++ ...+|..|-- +.++-... .|..+---+ ++- .++.+
T Consensus 235 ~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~------kVi~ip~~~v~~~~lp~ml~~~~ 308 (461)
T PF05694_consen 235 LQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAE------KVIDIPAKKVEGWILPEMLKPFG 308 (461)
T ss_dssp EEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEE------EEEEE--EE--SS---GGGGGG-
T ss_pred eeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeee------EEEECCCcccCcccccccccccc
Confidence 99886432 234566676666655544443 3445544432 21110000 011110000 000 00000
Q ss_pred ecccceeEEEecCCCCEEEEEe-CCCeEEEEECCCc
Q 001248 572 FRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSV 606 (1114)
Q Consensus 572 ~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~ 606 (1114)
....-++-+.+|.|+++|...+ .+|.|+.||+...
T Consensus 309 ~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 309 AVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred cCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 0012345566777777777766 7999999998763
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.68 Score=48.58 Aligned_cols=148 Identities=16% Similarity=0.052 Sum_probs=88.1
Q ss_pred CeEEEEEecCCCcEEEEEe---CCCcEEEEEcccceEEEe-ecccccCeeEEEEcCCCCEEEEEeCCCcEEEEe-CCCCc
Q 001248 861 AATFLAFHPQDNNIIAIGM---DDSSIQIYNVRVDEVKSK-LKGHSKRITGLAFSHALNVLVSSGADSQLCVWS-SDGWE 935 (1114)
Q Consensus 861 ~i~~l~~sp~d~~~la~g~---~dg~v~iwd~~~~~~~~~-l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd-~~~~~ 935 (1114)
.+.+.++++ +++.+|... ....++++.. +..... +.+ ..++.-.|++++...+....+...+++. ...+.
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcC--CCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 688999999 777666554 3335555543 332222 233 3688889999988877777777777774 22222
Q ss_pred cccccccccCCCCCCCCCCceEEEEccCCcEEEEE----eCCeEEEEEcC---CC--cee-eeeec-CCCCcCeeEEEEC
Q 001248 936 KQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV----HETQLAIFETT---KL--ECV-KQWVP-RESSAPITHATFS 1004 (1114)
Q Consensus 936 ~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~----~d~~i~iwd~~---~~--~~~-~~~~~-~~h~~~v~~l~~s 1004 (1114)
... ..+...... ..|..+.+||||..+|.. .+++|.+--+. .+ ..+ ..... ......+++++|.
T Consensus 100 ~~~-~~v~~~~~~----~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~ 174 (253)
T PF10647_consen 100 GEP-VEVDWPGLR----GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWS 174 (253)
T ss_pred cee-EEecccccC----CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeec
Confidence 211 111111110 168999999999999883 25677766433 22 011 00111 1225689999999
Q ss_pred CCCCEEEEEEcCCe
Q 001248 1005 CDSQLVYACFLDAT 1018 (1114)
Q Consensus 1005 ~dg~~l~s~s~Dg~ 1018 (1114)
+++.+++.+...+.
T Consensus 175 ~~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 175 DDSTLVVLGRSAGG 188 (253)
T ss_pred CCCEEEEEeCCCCC
Confidence 99998776655443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.63 Score=55.20 Aligned_cols=188 Identities=10% Similarity=0.068 Sum_probs=96.6
Q ss_pred eCCCEEEEEe-C------CeEEEEEcCCCcc--ccccCCCCCCeEEEEEecCCCcEEEEEeCCC-----cEEEEEcccc-
Q 001248 828 KNDSYVMSAS-G------GKISLFNMMTFKT--MATFMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVD- 892 (1114)
Q Consensus 828 ~d~~~l~~~~-d------g~i~iwd~~~~~~--~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg-----~v~iwd~~~~- 892 (1114)
-++...+.|+ + ..+..||..+..- +..+....... +++. - ++++.+.|+.++ .+..||..+.
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~-~-~g~IYviGG~~~~~~~~sve~Ydp~~~~ 378 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAV-I-DDTIYAIGGQNGTNVERTIECYTMGDDK 378 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEE-E-CCEEEEECCcCCCCCCceEEEEECCCCe
Confidence 4667777766 3 2477888776532 22222111112 2222 2 688889998765 4888998764
Q ss_pred -eEEEeecccccCeeEEEEcCCCCEEEEEeCCC-----------------------cEEEEeCCCCccccccccccCCCC
Q 001248 893 -EVKSKLKGHSKRITGLAFSHALNVLVSSGADS-----------------------QLCVWSSDGWEKQKNRFLQIPTGR 948 (1114)
Q Consensus 893 -~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~-----------------------~v~iwd~~~~~~~~~~~~~~~~~~ 948 (1114)
..+..+.........+++ +|++.+.||.++ ++..||..+.+ +..+......
T Consensus 379 W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~---W~~v~~m~~~ 453 (557)
T PHA02713 379 WKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI---WETLPNFWTG 453 (557)
T ss_pred EEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe---EeecCCCCcc
Confidence 333333322222222333 678888888653 36677776632 2222211111
Q ss_pred CCCCCCceEEEEccCCcEEEEE-eC------CeEEEEEcCC-CceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCC--e
Q 001248 949 TPTAQSDTRVQFHQDQIHFLVV-HE------TQLAIFETTK-LECVKQWVPRESSAPITHATFSCDSQLVYACFLDA--T 1018 (1114)
Q Consensus 949 ~~~~~~i~~v~fspdg~~l~~~-~d------~~i~iwd~~~-~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg--~ 1018 (1114)
.....+..-+|+..++| .+ ..+..||..+ .+-...............++ -+|+..++|+.|| .
T Consensus 454 -----r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~ 526 (557)
T PHA02713 454 -----TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYESYML 526 (557)
T ss_pred -----cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecceee
Confidence 01111223345555554 22 2467899887 44332222111111222222 2788888899888 6
Q ss_pred EEEEEcCCCeee
Q 001248 1019 VCVFSAANLKLR 1030 (1114)
Q Consensus 1019 I~vwd~~~~~~~ 1030 (1114)
+..||..+.+-.
T Consensus 527 ~e~yd~~~~~W~ 538 (557)
T PHA02713 527 QDTFNVYTYEWN 538 (557)
T ss_pred hhhcCccccccc
Confidence 777777776543
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.051 Score=53.09 Aligned_cols=103 Identities=13% Similarity=0.156 Sum_probs=62.3
Q ss_pred EEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCc
Q 001248 374 LLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD 453 (1114)
Q Consensus 374 l~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~ 453 (1114)
+++|+.+|.|.+|++..-.... ..+..+-..-..-+.--.++.+..+++.||.|+.|++.-++
T Consensus 73 ~~vG~~dg~v~~~n~n~~g~~~-----------------d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k 135 (238)
T KOG2444|consen 73 LMVGTSDGAVYVFNWNLEGAHS-----------------DRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNK 135 (238)
T ss_pred EEeecccceEEEecCCccchHH-----------------HhhhcccccceeccccccccceeEEeccCCceeeeccccCc
Confidence 8889999999999987211110 00111112122223334466788899999999999999877
Q ss_pred eeeeeEeecccc-CCeeEEEecCCCCeeEEEEe--cCCCCEEEEeCCC
Q 001248 454 EVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITC--GDDKTIKVWDATN 498 (1114)
Q Consensus 454 ~~~~~~~l~~h~-~~V~~v~~s~d~~~~~l~s~--~~d~~i~iwd~~~ 498 (1114)
.+. ....|. .++.....+..++ .++.+ |.|..++.|++..
T Consensus 136 ~~g---~~g~h~~~~~e~~ivv~sd~--~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 136 VLG---YVGQHNFESGEELIVVGSDE--FLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eee---eeccccCCCcceeEEecCCc--eEEeeccccchhhhhcchhh
Confidence 665 344565 4555555555555 34444 6666666666553
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.061 Score=38.70 Aligned_cols=31 Identities=19% Similarity=0.360 Sum_probs=28.4
Q ss_pred CCCeeEEEEcCCCCeEEEEeCCCeEEEEEcc
Q 001248 420 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYH 450 (1114)
Q Consensus 420 ~~~V~~l~~spdg~~las~~~dg~i~iwd~~ 450 (1114)
...|.+++|+|...+||.++.+|.|.|+.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3479999999999999999999999999983
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=95.12 E-value=7.1 Score=47.33 Aligned_cols=95 Identities=13% Similarity=0.103 Sum_probs=60.7
Q ss_pred CCCCccEEEEeeCCCEEEEEeCCeEEEEEcCC-CccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEE
Q 001248 817 PEEAVPCFALSKNDSYVMSASGGKISLFNMMT-FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 895 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~ 895 (1114)
..-.|..+.++++|++++..+...|.|..+.. ...-..+.+....|.|=.+.- +..++.
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v-~~~~~~------------------- 142 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPV-DERFFT------------------- 142 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEe-chhhcc-------------------
Confidence 44578899999999999999877777776642 111122333333344333322 222221
Q ss_pred EeecccccCeeEEEEcCC---CCEEEEEeCCCcEEEEeCCCC
Q 001248 896 SKLKGHSKRITGLAFSHA---LNVLVSSGADSQLCVWSSDGW 934 (1114)
Q Consensus 896 ~~l~~h~~~V~~l~~s~d---~~~l~s~s~D~~v~iwd~~~~ 934 (1114)
..+...|..+.|+|. +..|+.-..|+++++||+...
T Consensus 143 ---~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 143 ---SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred ---CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 123456778889886 478888899999999999753
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.086 Score=37.95 Aligned_cols=33 Identities=15% Similarity=0.206 Sum_probs=29.8
Q ss_pred CcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCe
Q 001248 995 SAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1028 (1114)
Q Consensus 995 ~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~ 1028 (1114)
...|..++|+|...+||.++.||.|.+|.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 567999999999999999999999999998 444
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.98 E-value=12 Score=45.50 Aligned_cols=105 Identities=11% Similarity=0.123 Sum_probs=68.4
Q ss_pred EEEeeCCCEEEEEeCCeEEEEEcCCCcccccc--CCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEc--ccceEEEeec
Q 001248 824 FALSKNDSYVMSASGGKISLFNMMTFKTMATF--MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV--RVDEVKSKLK 899 (1114)
Q Consensus 824 v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~--~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~--~~~~~~~~l~ 899 (1114)
.|+.|...++.+|-...+++||+...+.++.. +.....|+.+.+. +..+++|...-.|.++.. ...+++ .+.
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~---~~RI~VgD~qeSV~~~~y~~~~n~l~-~fa 1014 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY---GARIVVGDIQESVHFVRYRREDNQLI-VFA 1014 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec---ceEEEEeeccceEEEEEEecCCCeEE-EEe
Confidence 35667777888888999999999877766553 3345667888774 567888876666665444 444433 332
Q ss_pred c--cccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001248 900 G--HSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 933 (1114)
Q Consensus 900 ~--h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~ 933 (1114)
+ -...|+++.+- |-..+|.+..=|.+.+-.+..
T Consensus 1015 dD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1015 DDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred CCCccceeeEEEEe-cCCceeeccccCcEEEEECCC
Confidence 2 23346666665 455777777777776665543
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=94.70 E-value=14 Score=45.10 Aligned_cols=245 Identities=9% Similarity=0.033 Sum_probs=113.8
Q ss_pred cceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCC
Q 001248 752 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 831 (1114)
Q Consensus 752 ~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~ 831 (1114)
-.+..+.++|||++|+.+...+--.-++ +.+.++.+|..+...+.+ .-..++|++|++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~-----------------l~v~d~~tg~~l~~~i~~-----~~~~~~w~~D~~ 184 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYG-----------------IRFRNLETGNWYPELLDN-----VEPSFVWANDSW 184 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEE-----------------EEEEECCCCCCCCccccC-----cceEEEEeeCCC
Confidence 4567788999999877654432111111 123344455433222221 114589999999
Q ss_pred EEEEEe-C------CeEEEEEcCCC--ccccccCCCCCCeE-EEEEecCCCcEEEEEeC---CCcEEEEEcc--cceEEE
Q 001248 832 YVMSAS-G------GKISLFNMMTF--KTMATFMPPPPAAT-FLAFHPQDNNIIAIGMD---DSSIQIYNVR--VDEVKS 896 (1114)
Q Consensus 832 ~l~~~~-d------g~i~iwd~~~~--~~~~~~~~~~~~i~-~l~~sp~d~~~la~g~~---dg~v~iwd~~--~~~~~~ 896 (1114)
.|+... + ..|..+++.++ +....+........ .+..+. ++++++..+. ++.+.+|+.. +++...
T Consensus 185 ~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~-d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~ 263 (686)
T PRK10115 185 TFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTT-SKHYVVIHLASATTSEVLLLDAELADAEPFV 263 (686)
T ss_pred EEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcC-CCCEEEEEEECCccccEEEEECcCCCCCceE
Confidence 777664 2 25888888877 33333433333333 233333 6666555443 3578888842 333222
Q ss_pred eecccccCeeEEEEcCCCCEEEEEeCC-CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE--EeCC
Q 001248 897 KLKGHSKRITGLAFSHALNVLVSSGAD-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHET 973 (1114)
Q Consensus 897 ~l~~h~~~V~~l~~s~d~~~l~s~s~D-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~--~~d~ 973 (1114)
.+..-.+....+. +..+.+++....+ ...+|..+.-........+..... ...+..+.++ +++|+. -.++
T Consensus 264 ~~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~----~~~i~~~~~~--~~~l~~~~~~~g 336 (686)
T PRK10115 264 FLPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRE----NIMLEGFTLF--TDWLVVEERQRG 336 (686)
T ss_pred EEECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCC----CCEEEEEEEE--CCEEEEEEEeCC
Confidence 2221122222332 2233333333222 233344332211111122211111 1246677776 334444 3455
Q ss_pred e--EEEEEcCCCceeeeeecCCCCcCeeEEEEC--CCCC-EEEEEEc---CCeEEEEEcCCCe
Q 001248 974 Q--LAIFETTKLECVKQWVPRESSAPITHATFS--CDSQ-LVYACFL---DATVCVFSAANLK 1028 (1114)
Q Consensus 974 ~--i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s--~dg~-~l~s~s~---Dg~I~vwd~~~~~ 1028 (1114)
. +.+++..++ .+..+.... ...+..+.++ +++. ++++.+. -+.++.+|..+++
T Consensus 337 ~~~l~~~~~~~~-~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 337 LTSLRQINRKTR-EVIGIAFDD-PAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEEEEcCCCC-ceEEecCCC-CceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 4 555565433 333332111 1223333444 4444 4444443 3679999998875
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.70 E-value=1.5 Score=51.86 Aligned_cols=192 Identities=9% Similarity=0.056 Sum_probs=100.9
Q ss_pred EEEEeeCCCEEEEEe-C------CeEEEEEcCCCcccc--ccCCCCCCeEEEEEecCCCcEEEEEeCCC-----cEEEEE
Q 001248 823 CFALSKNDSYVMSAS-G------GKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYN 888 (1114)
Q Consensus 823 ~v~~s~d~~~l~~~~-d------g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~la~g~~dg-----~v~iwd 888 (1114)
++++ -++...++|+ | .++..||..+.+-.. .+...........+ +|.+.|+|+.|| +|..||
T Consensus 327 ~~~~-~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l---~g~iYavGG~dg~~~l~svE~YD 402 (571)
T KOG4441|consen 327 GVAV-LNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL---DGKLYAVGGFDGEKSLNSVECYD 402 (571)
T ss_pred cEEE-ECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE---CCEEEEEeccccccccccEEEec
Confidence 3444 3556666766 6 347788887655332 22211111222222 789999999997 477788
Q ss_pred cccc--eEEEeecccccCeeEEEEcCCCCEEEEEeCCC------cEEEEeCCCCccccccccccCCCCCCCCCCceEEEE
Q 001248 889 VRVD--EVKSKLKGHSKRITGLAFSHALNVLVSSGADS------QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF 960 (1114)
Q Consensus 889 ~~~~--~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~f 960 (1114)
..+. ..+..+.........+.+ +|++.+.||.|+ ++..||..++.=.....+...... ..++
T Consensus 403 p~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~-------~g~a- 472 (571)
T KOG4441|consen 403 PVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSG-------FGVA- 472 (571)
T ss_pred CCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccccc-------ceEE-
Confidence 7764 333333322222333333 688888888664 467888777543222222222211 2233
Q ss_pred ccCCcEEEE-EeCC-----eEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCC-----eEEEEEcCCCee
Q 001248 961 HQDQIHFLV-VHET-----QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-----TVCVFSAANLKL 1029 (1114)
Q Consensus 961 spdg~~l~~-~~d~-----~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg-----~I~vwd~~~~~~ 1029 (1114)
.-++...++ |.|+ ++..||..+.+-...-........+.... -+++..++|+.|| +|..||-.+.+-
T Consensus 473 ~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W 550 (571)
T KOG4441|consen 473 VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPETDTW 550 (571)
T ss_pred EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEE--ECCEEEEEecccCccccceeEEcCCCCCce
Confidence 334555555 4444 47889988766544322111122222222 2566677787775 466676665543
Q ss_pred e
Q 001248 1030 R 1030 (1114)
Q Consensus 1030 ~ 1030 (1114)
.
T Consensus 551 ~ 551 (571)
T KOG4441|consen 551 T 551 (571)
T ss_pred e
Confidence 3
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=94.61 E-value=7.6 Score=43.54 Aligned_cols=138 Identities=15% Similarity=0.131 Sum_probs=78.8
Q ss_pred CCccEEEEeeCCCEEEEEe------------CC-eEEEEEcCC--Ccc--ccccCCCCCCeEEEEEecCCCcEEEEEeCC
Q 001248 819 EAVPCFALSKNDSYVMSAS------------GG-KISLFNMMT--FKT--MATFMPPPPAATFLAFHPQDNNIIAIGMDD 881 (1114)
Q Consensus 819 ~~v~~v~~s~d~~~l~~~~------------dg-~i~iwd~~~--~~~--~~~~~~~~~~i~~l~~sp~d~~~la~g~~d 881 (1114)
.....+++.++|+++++-. .+ .|.+++-.+ ++. ...+.......+.+++.+ ++ +++ +...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCC
Confidence 4467899999999887742 23 777776543 222 223333334568899988 77 444 3444
Q ss_pred CcEEEE-Eccc-------ce-EEEeecc----cccCeeEEEEcCCCCEEEEEeCC-------------------CcEEEE
Q 001248 882 SSIQIY-NVRV-------DE-VKSKLKG----HSKRITGLAFSHALNVLVSSGAD-------------------SQLCVW 929 (1114)
Q Consensus 882 g~v~iw-d~~~-------~~-~~~~l~~----h~~~V~~l~~s~d~~~l~s~s~D-------------------~~v~iw 929 (1114)
.|..| |... .+ ++..+.. +......++|.|||.+.++.+.. +.|.-+
T Consensus 91 -~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 91 -DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred -eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 45444 4421 11 1222322 23447789999999887765521 334444
Q ss_pred eCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE
Q 001248 930 SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 969 (1114)
Q Consensus 930 d~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~ 969 (1114)
+.++++. .....+. .....++|+++|+++++
T Consensus 170 ~pdg~~~-----e~~a~G~----rnp~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 170 NPDGGKL-----RVVAHGF----QNPYGHSVDSWGDVFFC 200 (367)
T ss_pred ecCCCeE-----EEEecCc----CCCccceECCCCCEEEE
Confidence 4544321 1112222 23578999999999877
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=94.36 E-value=5.4 Score=41.12 Aligned_cols=191 Identities=10% Similarity=0.090 Sum_probs=103.0
Q ss_pred cccceEEEEEccCcceeeecccCc--eEEEEeecccccCCCCCccccccccccCCCCCccccc-cCCCCCCCCCccEEEE
Q 001248 750 RATKISRLIFTNSGNAILALASNA--IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN-DVTDSNPEEAVPCFAL 826 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~~dg--~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~-~~~~~~~~~~v~~v~~ 826 (1114)
...-...+.|..+|..+-+.+.-| .|+.++ +.+|+.... .+. ...--..+++
T Consensus 43 ~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d----------------------~~tg~~~~~~~l~---~~~FgEGit~ 97 (264)
T PF05096_consen 43 PTAFTQGLEFLDDGTLYESTGLYGQSSLRKVD----------------------LETGKVLQSVPLP---PRYFGEGITI 97 (264)
T ss_dssp TT-EEEEEEEEETTEEEEEECSTTEEEEEEEE----------------------TTTSSEEEEEE-T---TT--EEEEEE
T ss_pred CcccCccEEecCCCEEEEeCCCCCcEEEEEEE----------------------CCCCcEEEEEECC---ccccceeEEE
Confidence 344567888888888777777765 455444 345543321 111 2223334555
Q ss_pred eeCCCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeeccc-----
Q 001248 827 SKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH----- 901 (1114)
Q Consensus 827 s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h----- 901 (1114)
..|.-+..+--++...+||..+.+.+.++.-. .+=..++ . |++.|+.......++++|..+.+....+.-.
T Consensus 98 ~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~-~EGWGLt--~-dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~p 173 (264)
T PF05096_consen 98 LGDKLYQLTWKEGTGFVYDPNTLKKIGTFPYP-GEGWGLT--S-DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRP 173 (264)
T ss_dssp ETTEEEEEESSSSEEEEEETTTTEEEEEEE-S-SS--EEE--E-CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE
T ss_pred ECCEEEEEEecCCeEEEEccccceEEEEEecC-CcceEEE--c-CCCEEEEECCccceEEECCcccceEEEEEEEECCEE
Confidence 54433444444899999999998888777532 3445555 3 5666766666778999998877666555322
Q ss_pred ccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccc-------cCCCCCCCCCCceEEEEccCCcEEEEE
Q 001248 902 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQ-------IPTGRTPTAQSDTRVQFHQDQIHFLVV 970 (1114)
Q Consensus 902 ~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~i~~v~fspdg~~l~~~ 970 (1114)
-..++-+.|- +|...|=.=....|..-|..+++.....-+. ......+...-...+|+.|.+..+.+.
T Consensus 174 v~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vT 248 (264)
T PF05096_consen 174 VSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVT 248 (264)
T ss_dssp ---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEE
T ss_pred CCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEE
Confidence 1235556665 5655555444555666666666543321110 011111123456899999877666653
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=94.30 E-value=4.5 Score=41.09 Aligned_cols=198 Identities=13% Similarity=0.139 Sum_probs=127.2
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccc
Q 001248 862 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRF 941 (1114)
Q Consensus 862 i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~ 941 (1114)
-..++-+| ||..-.++...|.|--.|..+|+....--+....-..|..-|||..-++-+.. -|.-.|-++.+...
T Consensus 64 p~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~--- 138 (353)
T COG4257 64 PFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTR--- 138 (353)
T ss_pred ccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEE---
Confidence 45677778 88888888888888888999998776665655666778888888777664433 34444554433322
Q ss_pred cccCCCCCCCCCCceEEEEccCCcEEEEEeCC----------eEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEE
Q 001248 942 LQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET----------QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVY 1011 (1114)
Q Consensus 942 ~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~----------~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~ 1011 (1114)
......+. ........|.++|++-.++..| .|++|+.. .....+.|+..|||..-+
T Consensus 139 f~lp~~~a--~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP------------qG~gpyGi~atpdGsvwy 204 (353)
T COG4257 139 FPLPLEHA--DANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP------------QGGGPYGICATPDGSVWY 204 (353)
T ss_pred eecccccC--CCcccceeeCCCccEEEeeccccceecCcccCceeeeccC------------CCCCCcceEECCCCcEEE
Confidence 12222222 2467889999999998886433 34444432 244567889999999888
Q ss_pred EEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCC-CcccCC
Q 001248 1012 ACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE-GKWGVP 1087 (1114)
Q Consensus 1012 s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~-~~~~~~ 1087 (1114)
+.-.+..|-.-|-.++.. .++.....+..+ .. .+--+| -+..-+|....+.++.+|.++.. ..|.+|
T Consensus 205 aslagnaiaridp~~~~a-ev~p~P~~~~~g-----sR--riwsdp-ig~~wittwg~g~l~rfdPs~~sW~eypLP 272 (353)
T COG4257 205 ASLAGNAIARIDPFAGHA-EVVPQPNALKAG-----SR--RIWSDP-IGRAWITTWGTGSLHRFDPSVTSWIEYPLP 272 (353)
T ss_pred EeccccceEEcccccCCc-ceecCCCccccc-----cc--ccccCc-cCcEEEeccCCceeeEeCcccccceeeeCC
Confidence 877777888778777732 233322222222 11 233345 47777887778888888887755 344443
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.18 E-value=11 Score=41.54 Aligned_cols=155 Identities=10% Similarity=0.042 Sum_probs=88.6
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEE-EEcccceEEEe-ecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc
Q 001248 859 PPAATFLAFHPQDNNIIAIGMDDSSIQI-YNVRVDEVKSK-LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEK 936 (1114)
Q Consensus 859 ~~~i~~l~~sp~d~~~la~g~~dg~v~i-wd~~~~~~~~~-l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~ 936 (1114)
...+..+.+.| ++.++++|. .|.++. +|- .++.-.. -.+-...++++.+.++++.++.+ ..|.+++=..+.++.
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g~-~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVSS-RGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECC-CCeEEEEeC-CceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence 45688999999 777776554 565543 221 1121111 22334678999999998876654 567654322333221
Q ss_pred ccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCCceeeeeec-CCCCcCeeEEEECCCCCEEEEEEc
Q 001248 937 QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVP-RESSAPITHATFSCDSQLVYACFL 1015 (1114)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~-~~h~~~v~~l~~s~dg~~l~s~s~ 1015 (1114)
+......... ....+..+.|.+++..++++.+|.+. .....++.-..... ..-....+.+.|..+++.+++| .
T Consensus 248 --W~~~~~~~~~--~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~ 321 (334)
T PRK13684 248 --WSKPIIPEIT--NGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-Q 321 (334)
T ss_pred --cccccCCccc--cccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-C
Confidence 1111111010 11246788999999988888887665 34444444333221 1113467788888777776655 6
Q ss_pred CCeEEEEE
Q 001248 1016 DATVCVFS 1023 (1114)
Q Consensus 1016 Dg~I~vwd 1023 (1114)
.|.|..|+
T Consensus 322 ~G~il~~~ 329 (334)
T PRK13684 322 RGVLLRYV 329 (334)
T ss_pred CceEEEec
Confidence 78887776
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=93.85 E-value=4.1 Score=44.87 Aligned_cols=190 Identities=15% Similarity=0.163 Sum_probs=89.9
Q ss_pred EEEeeCCCEEEEEe---C----CeEEEEEcCCCccccccCCCC---CCeEEEEEecCCCcEEEEEe--------------
Q 001248 824 FALSKNDSYVMSAS---G----GKISLFNMMTFKTMATFMPPP---PAATFLAFHPQDNNIIAIGM-------------- 879 (1114)
Q Consensus 824 v~~s~d~~~l~~~~---d----g~i~iwd~~~~~~~~~~~~~~---~~i~~l~~sp~d~~~la~g~-------------- 879 (1114)
+-.-|+|+.++++- + |.+.++|-++.+......... .--..+-+.| ..+.+++..
T Consensus 135 ~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~ 213 (461)
T PF05694_consen 135 VHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPE 213 (461)
T ss_dssp EEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TT
T ss_pred eeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChh
Confidence 34457888887762 2 558888888777665554322 2234566667 556665543
Q ss_pred ------CCCcEEEEEcccceEEEeecccc--cCeeEEEEcCC--CCE-EEEEeCCCcEEEEeC-CCCccccccccccCCC
Q 001248 880 ------DDSSIQIYNVRVDEVKSKLKGHS--KRITGLAFSHA--LNV-LVSSGADSQLCVWSS-DGWEKQKNRFLQIPTG 947 (1114)
Q Consensus 880 ------~dg~v~iwd~~~~~~~~~l~~h~--~~V~~l~~s~d--~~~-l~s~s~D~~v~iwd~-~~~~~~~~~~~~~~~~ 947 (1114)
-..++.+||+.+.+.++++.--. .....|.|..+ ..+ ++.+.-..+|..|-- +.++=.....+.+...
T Consensus 214 d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~ 293 (461)
T PF05694_consen 214 DLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAK 293 (461)
T ss_dssp THHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--E
T ss_pred HhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCc
Confidence 23479999999999998886432 23456666644 444 333333444444322 3332222222222221
Q ss_pred -------------CCCCCCCceEEEEccCCcEEEEE--eCCeEEEEEcCCCc---eeeeeecCCC--------------C
Q 001248 948 -------------RTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLE---CVKQWVPRES--------------S 995 (1114)
Q Consensus 948 -------------~~~~~~~i~~v~fspdg~~l~~~--~d~~i~iwd~~~~~---~~~~~~~~~h--------------~ 995 (1114)
....+.-|+.+.+|.|.++|.++ .+|.++.||+..-. .+.+....+- .
T Consensus 294 ~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~ 373 (461)
T PF05694_consen 294 KVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLR 373 (461)
T ss_dssp E--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------
T ss_pred ccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccC
Confidence 01112467999999999999995 78999999998743 3333332211 2
Q ss_pred cCeeEEEECCCCCEEEEEE
Q 001248 996 APITHATFSCDSQLVYACF 1014 (1114)
Q Consensus 996 ~~v~~l~~s~dg~~l~s~s 1014 (1114)
+....+..|-||+.|+..+
T Consensus 374 GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 374 GGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp S----EEE-TTSSEEEEE-
T ss_pred CCCCeEEEccCCeEEEEEe
Confidence 2346788999999988765
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.9 Score=53.08 Aligned_cols=118 Identities=10% Similarity=0.121 Sum_probs=75.0
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeec-ccccCeeEEEEc--CCCCEEEEEeCCCcEEEEeCCC----
Q 001248 861 AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK-GHSKRITGLAFS--HALNVLVSSGADSQLCVWSSDG---- 933 (1114)
Q Consensus 861 ~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~-~h~~~V~~l~~s--~d~~~l~s~s~D~~v~iwd~~~---- 933 (1114)
.++-+.-|. -++..++-+....+.|||...+.+...-. ...+.|.++.|. |||+.+++.|-.+.|.+|.-..
T Consensus 31 ~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 31 NPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 344444444 34455554455689999999876443222 356789999985 7899999999999999986421
Q ss_pred CccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEc
Q 001248 934 WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFET 980 (1114)
Q Consensus 934 ~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~ 980 (1114)
.....+..+....-...++++|....|.+||.+++ +.+.++.|+|-
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV-~sGNqlfv~dk 155 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVV-GSGNQLFVFDK 155 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEecCCeEEE-EeCCEEEEECC
Confidence 12222223333222222336788999999997655 45677888864
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=93.81 E-value=9.8 Score=39.70 Aligned_cols=206 Identities=10% Similarity=0.101 Sum_probs=121.3
Q ss_pred ccEEEEeeCCCEEEEEe-CCeEEEEEcC------CC-ccccccCC-----CCCCeEEEEEecCCCc------------EE
Q 001248 821 VPCFALSKNDSYVMSAS-GGKISLFNMM------TF-KTMATFMP-----PPPAATFLAFHPQDNN------------II 875 (1114)
Q Consensus 821 v~~v~~s~d~~~l~~~~-dg~i~iwd~~------~~-~~~~~~~~-----~~~~i~~l~~sp~d~~------------~l 875 (1114)
...++++|.+.+-++.. -+...+||.. .. ..+-++.. .....+.+.|+. ... .+
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSRF 103 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCcccceeE
Confidence 56799999887766665 6889999986 11 11222331 234577888875 222 25
Q ss_pred EEEeCCCcEEEEEcccceE-----EEeec-ccccCe-eEEEEcCC--CCEEE-EEeCCCcEEEEeCCCCccccc-ccc--
Q 001248 876 AIGMDDSSIQIYNVRVDEV-----KSKLK-GHSKRI-TGLAFSHA--LNVLV-SSGADSQLCVWSSDGWEKQKN-RFL-- 942 (1114)
Q Consensus 876 a~g~~dg~v~iwd~~~~~~-----~~~l~-~h~~~V-~~l~~s~d--~~~l~-s~s~D~~v~iwd~~~~~~~~~-~~~-- 942 (1114)
+.+++||+|.=|...-+.. ...+. ...+.| ..+++... +.+|. +--..++|.|+|-.-...... ...
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 6678999999998532221 12222 112333 34565532 44554 445678999998654221100 000
Q ss_pred ccCCCCCCCCCCceEEEEccCCcEEEE-E-------------eCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECC---
Q 001248 943 QIPTGRTPTAQSDTRVQFHQDQIHFLV-V-------------HETQLAIFETTKLECVKQWVPRESSAPITHATFSC--- 1005 (1114)
Q Consensus 943 ~~~~~~~~~~~~i~~v~fspdg~~l~~-~-------------~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~--- 1005 (1114)
.++.+. ....+.-- .+++.++ + .-|.|-+||.. |..++.+...+.-...+.|+..|
T Consensus 184 ~iPagy-----APFnIqni-g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~F 256 (336)
T TIGR03118 184 ALPAGY-----APFNVQNL-GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESF 256 (336)
T ss_pred CCCCCC-----CCcceEEE-CCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhh
Confidence 001111 01111111 2333333 2 23578999985 77777776666666778888866
Q ss_pred ---CCCEEEEEEcCCeEEEEEcCCCeeeEEeC
Q 001248 1006 ---DSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 1006 ---dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
.|.+|+--..||+|-.||..+|+.+..+.
T Consensus 257 G~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~ 288 (336)
T TIGR03118 257 GSLSGALLVGNFGDGTINAYDPQSGAQLGQLL 288 (336)
T ss_pred CCCCCCeEEeecCCceeEEecCCCCceeeeec
Confidence 66777766679999999999999998877
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=93.80 E-value=10 Score=45.99 Aligned_cols=69 Identities=22% Similarity=0.337 Sum_probs=40.2
Q ss_pred cCCcEEEEEcCCcceeEEeeeeeeccCC---CCcccccccc-cCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEc
Q 001248 379 NVGDIGLWEVGSRERLVLRNFKVWDLGA---CSMPLQAALV-KDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSY 449 (1114)
Q Consensus 379 ~dg~v~iwd~~~~~~~~~~~~~~~d~~~---~~~~~~~~~~-~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~ 449 (1114)
.|+.+.+||-..... ...+++.-+-.. ....++.... ..-.-.|..|.+||+|++||..|..| |.|-.+
T Consensus 40 ~d~~L~vWd~~e~~l-~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~-v~V~~L 112 (717)
T PF10168_consen 40 RDGDLFVWDSSECCL-LTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGPRG-VVVLEL 112 (717)
T ss_pred eCCEEEEEECCCCEE-EEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcCCc-EEEEEe
Confidence 367888888765443 223443332211 1122332211 22345799999999999999998877 444444
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.66 E-value=2.9 Score=49.82 Aligned_cols=187 Identities=7% Similarity=-0.015 Sum_probs=91.3
Q ss_pred eCCCEEEEEe-C------CeEEEEEcCCCccccc--cCCCCCCeEEEEEecCCCcEEEEEeCCC-----cEEEEEcccce
Q 001248 828 KNDSYVMSAS-G------GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVDE 893 (1114)
Q Consensus 828 ~d~~~l~~~~-d------g~i~iwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~la~g~~dg-----~v~iwd~~~~~ 893 (1114)
.++..++.|+ + ..+..||..+.+.... +.........+. - ++++++.|+.++ .+..||..+++
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--F-NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--E-CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 4556666665 3 2477888776543221 111111222222 2 678888888663 57788877643
Q ss_pred --EEEeecccccCeeEEEEcCCCCEEEEEeCC------CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCc
Q 001248 894 --VKSKLKGHSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI 965 (1114)
Q Consensus 894 --~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~ 965 (1114)
....+....... +++ .-++++.+.||.+ ..+..||..+++ +..+....... . ...+...+++
T Consensus 370 W~~~~~lp~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~---W~~~~~~p~~r----~-~~~~~~~~~~ 439 (534)
T PHA03098 370 WREEPPLIFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNK---WSKGSPLPISH----Y-GGCAIYHDGK 439 (534)
T ss_pred eeeCCCcCcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCe---eeecCCCCccc----c-CceEEEECCE
Confidence 222222111111 122 2356777777742 357888887643 22221111110 1 1122334555
Q ss_pred EEEEEe-C--------CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcC-----CeEEEEEcCCCee
Q 001248 966 HFLVVH-E--------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKL 1029 (1114)
Q Consensus 966 ~l~~~~-d--------~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D-----g~I~vwd~~~~~~ 1029 (1114)
..+.|+ + ..+.+||..+.+-...-...........+.+ +++.++.|+.+ ..|.+||..+.+-
T Consensus 440 iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 440 IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred EEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 555542 1 2388899887654332111110111112222 66776777654 4678888777654
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=93.63 E-value=12 Score=40.08 Aligned_cols=231 Identities=12% Similarity=0.031 Sum_probs=108.4
Q ss_pred CccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccC---CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc-ceEE
Q 001248 820 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFM---PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVK 895 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~-~~~~ 895 (1114)
...++.|.. ...+++|..+. .+.....++.-..+. .-+.....+.... ++..+++ +..|.|+. ... |+.-
T Consensus 63 ~l~~I~f~~-~~g~ivG~~g~-ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~~~~l~-~~~G~iy~--T~DgG~tW 136 (302)
T PF14870_consen 63 HLNSISFDG-NEGWIVGEPGL-LLHTTDGGKTWERVPLSSKLPGSPFGITALG-DGSAELA-GDRGAIYR--TTDGGKTW 136 (302)
T ss_dssp EEEEEEEET-TEEEEEEETTE-EEEESSTTSS-EE----TT-SS-EEEEEEEE-TTEEEEE-ETT--EEE--ESSTTSSE
T ss_pred eEEEEEecC-CceEEEcCCce-EEEecCCCCCcEEeecCCCCCCCeeEEEEcC-CCcEEEE-cCCCcEEE--eCCCCCCe
Confidence 355677654 34555555554 333333333322221 1122333333333 3434433 44555433 222 2211
Q ss_pred -EeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCe
Q 001248 896 -SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQ 974 (1114)
Q Consensus 896 -~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~ 974 (1114)
.....-.+.+..+.-++||+++++++.-....-|+-... ......... ...|..+.|+||+.+.+++..+.
T Consensus 137 ~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~---~w~~~~r~~-----~~riq~~gf~~~~~lw~~~~Gg~ 208 (302)
T PF14870_consen 137 QAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT---TWQPHNRNS-----SRRIQSMGFSPDGNLWMLARGGQ 208 (302)
T ss_dssp EEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-S---S-EEEE--S-----SS-EEEEEE-TTS-EEEEETTTE
T ss_pred eEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCc---cceEEccCc-----cceehhceecCCCCEEEEeCCcE
Confidence 122344577889999999999888876666667775431 112222211 13689999999999988888888
Q ss_pred EEEEE-cCCCceeee--eecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccce
Q 001248 975 LAIFE-TTKLECVKQ--WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPL 1051 (1114)
Q Consensus 975 i~iwd-~~~~~~~~~--~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1051 (1114)
|+.=+ ....+.-.. .........+..++|.+++...++|+ .|.+. ...+.|+--.+-+.....+ .+.+
T Consensus 209 ~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~-~S~DgGktW~~~~~~~~~~-----~n~~-- 279 (302)
T PF14870_consen 209 IQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLL-VSTDGGKTWQKDRVGENVP-----SNLY-- 279 (302)
T ss_dssp EEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EE-EESSTTSS-EE-GGGTTSS-----S-----
T ss_pred EEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEE-EeCCCCccceECccccCCC-----CceE--
Confidence 88766 222222111 11111234589999999988777665 55443 4667777655544222222 1244
Q ss_pred EEEecCCCCCeEEEEeCCCcEEEE
Q 001248 1052 VIAAHPQEPNEFALGLSDGGVHVF 1075 (1114)
Q Consensus 1052 ~~~~~~~d~~~l~s~~~Dg~v~vW 1075 (1114)
.+.|.+ ++.-.+.+.+|.|--|
T Consensus 280 ~i~f~~--~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 280 RIVFVN--PDKGFVLGQDGVLLRY 301 (302)
T ss_dssp EEEEEE--TTEEEEE-STTEEEEE
T ss_pred EEEEcC--CCceEEECCCcEEEEe
Confidence 888875 3455555678887655
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.43 E-value=8.9 Score=38.03 Aligned_cols=207 Identities=13% Similarity=0.128 Sum_probs=110.7
Q ss_pred CCeEEEEEcCCCccccc-cCCCCCCeEEEEEecCC-CcEEEEE-eCCCcEEEEEcc--cceEEEee---cc--cccCeeE
Q 001248 838 GGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQD-NNIIAIG-MDDSSIQIYNVR--VDEVKSKL---KG--HSKRITG 907 (1114)
Q Consensus 838 dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~sp~d-~~~la~g-~~dg~v~iwd~~--~~~~~~~l---~~--h~~~V~~ 907 (1114)
.+.|.-||....+..+. +.+. ....+.+--.+ .+..+++ +..-.|--||.. .-.+..++ +. ...+.+.
T Consensus 36 ag~v~r~D~~qn~v~ra~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~ND 113 (310)
T KOG4499|consen 36 AGEVHRYDIEQNKVYRAKIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLND 113 (310)
T ss_pred cCceehhhhhhhheEEEEEecC--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchHHhccccc
Confidence 56777788876443322 2222 13333332211 1233333 333334446632 22333332 11 1345566
Q ss_pred EEEcCCCCEEEEEeCC---------CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE--EeCCeEE
Q 001248 908 LAFSHALNVLVSSGAD---------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHETQLA 976 (1114)
Q Consensus 908 l~~s~d~~~l~s~s~D---------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~--~~d~~i~ 976 (1114)
-..+|+|++.+-.-.| |.++.|-....-...+.++ +.-..++|+.|.+.+.. +.+-.|.
T Consensus 114 gkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v----------~IsNgl~Wd~d~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 114 GKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCV----------GISNGLAWDSDAKKFYYIDSLNYEVD 183 (310)
T ss_pred CccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhc----------cCCccccccccCcEEEEEccCceEEe
Confidence 6778999985532222 4455555443111111111 12367889988887776 5666777
Q ss_pred EEE--cCCCceeee---eecCC----CCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCC
Q 001248 977 IFE--TTKLECVKQ---WVPRE----SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSN 1047 (1114)
Q Consensus 977 iwd--~~~~~~~~~---~~~~~----h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 1047 (1114)
-|| ..+|..... +..+. ..-..-.+++..+|.+.+++-..++|.-.|..+|+.+..+. +|..
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eik----lPt~----- 254 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIK----LPTP----- 254 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEE----cCCC-----
Confidence 777 666643211 11111 12234456667788888888888999999999999999988 5532
Q ss_pred ccceEEEecCCCCCeEEEE
Q 001248 1048 VHPLVIAAHPQEPNEFALG 1066 (1114)
Q Consensus 1048 v~~~~~~~~~~d~~~l~s~ 1066 (1114)
...+++|-..+=+++++.
T Consensus 255 -qitsccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 255 -QITSCCFGGKNLDILYVT 272 (310)
T ss_pred -ceEEEEecCCCccEEEEE
Confidence 233888875332445544
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.83 Score=55.11 Aligned_cols=146 Identities=12% Similarity=0.064 Sum_probs=95.6
Q ss_pred CCCccEEEEeeCCCEEEEEe--C-CeEEEEEcCCCcccc-----ccCC------CCCCeEEEEEecCCCcEEEEEeCCCc
Q 001248 818 EEAVPCFALSKNDSYVMSAS--G-GKISLFNMMTFKTMA-----TFMP------PPPAATFLAFHPQDNNIIAIGMDDSS 883 (1114)
Q Consensus 818 ~~~v~~v~~s~d~~~l~~~~--d-g~i~iwd~~~~~~~~-----~~~~------~~~~i~~l~~sp~d~~~la~g~~dg~ 883 (1114)
...+..+...+|+...++.. + ..|..||+.+...-. .+.. ...-..++.|+|.-....|+...|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 34566677788877666554 3 369999987543221 1111 12345678888844556677888999
Q ss_pred EEEEEcccce-EEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEcc
Q 001248 884 IQIYNVRVDE-VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 962 (1114)
Q Consensus 884 v~iwd~~~~~-~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fsp 962 (1114)
|++..+.-.. .+..+ .-...+++++|+|-|+.++.|-..|++.-|...-..+....+.... ....|.+++|-.
T Consensus 180 l~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~-----e~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVE-----ENYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcC-----CCcceeEEEEec
Confidence 9998765422 22222 2456689999999999999999999999987665322111111111 125789999998
Q ss_pred CCcEEEE
Q 001248 963 DQIHFLV 969 (1114)
Q Consensus 963 dg~~l~~ 969 (1114)
.-.++++
T Consensus 254 t~eflvv 260 (1405)
T KOG3630|consen 254 TQEFLVV 260 (1405)
T ss_pred ceeEEEE
Confidence 8888887
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.097 Score=60.80 Aligned_cols=144 Identities=14% Similarity=0.198 Sum_probs=87.6
Q ss_pred CeEEEEEcC--CCcccccc-----CCCCCCeEEEEE---ecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEE
Q 001248 839 GKISLFNMM--TFKTMATF-----MPPPPAATFLAF---HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL 908 (1114)
Q Consensus 839 g~i~iwd~~--~~~~~~~~-----~~~~~~i~~l~~---sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l 908 (1114)
|.+.||++. .|+....+ ......+.-+.| .+ +.-++..+..+++|++....+... ..+++|+..++.+
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~-~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~ 230 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAV-NKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDM 230 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeeccccc-ccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccH
Confidence 678888875 33332222 122223344444 44 556788888999999887765432 4566788777766
Q ss_pred E-----------EcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccC-------Cc--EEE
Q 001248 909 A-----------FSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-------QI--HFL 968 (1114)
Q Consensus 909 ~-----------~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspd-------g~--~l~ 968 (1114)
+ .||||..+|.++.||.++.|.+.-......+|+...+.|.. ++-.|..|... |. +++
T Consensus 231 a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~--~p~vC~lc~~~~~~~v~i~~w~~~I 308 (1283)
T KOG1916|consen 231 AFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK--HPRVCWLCHKQEILVVSIGKWVLRI 308 (1283)
T ss_pred HHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC--CCceeeeeccccccCCccceeEEEE
Confidence 5 47999999999999999999876544444445444443332 23333334432 22 233
Q ss_pred EEe--CCeEEEEEcCCCcee
Q 001248 969 VVH--ETQLAIFETTKLECV 986 (1114)
Q Consensus 969 ~~~--d~~i~iwd~~~~~~~ 986 (1114)
++. +..+++|.....+|.
T Consensus 309 tttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 309 TTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ecccCCcceeEeeccchhhh
Confidence 433 356889988877776
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=92.94 E-value=2.8 Score=49.14 Aligned_cols=124 Identities=10% Similarity=0.098 Sum_probs=75.1
Q ss_pred CeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEee-ccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCC
Q 001248 467 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS 545 (1114)
Q Consensus 467 ~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 545 (1114)
...-+.-|.-++ ..+.-+...++.|||...+.....-. ...+.|.++.|...++++.+++.|..+.|.++--.....
T Consensus 31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 344455555555 33334445579999998887554332 357899999999999999999999999999984321000
Q ss_pred eeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEEC
Q 001248 546 RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM 603 (1114)
Q Consensus 546 ~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 603 (1114)
... ...-..+..+. +..++.+.+....|.++|..++.+ ++.+.|++-
T Consensus 109 ~~~-~p~w~~i~~i~--------i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 109 TNK-GPSWAPIRKID--------ISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred hcC-CcccceeEEEE--------eecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 000 00001222222 233444566667777777655443 467888774
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=92.94 E-value=13 Score=38.73 Aligned_cols=227 Identities=15% Similarity=0.220 Sum_probs=125.8
Q ss_pred CeeEEEEcCCCCeEEEEeCCCeEEEEEccC------CceeeeeEeecc-----ccCCeeEEEecCCCCe----------e
Q 001248 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHG------GDEVRQHLEIDA-----HVGGVNDIAFSHPNKQ----------L 480 (1114)
Q Consensus 422 ~V~~l~~spdg~~las~~~dg~i~iwd~~~------~~~~~~~~~l~~-----h~~~V~~v~~s~d~~~----------~ 480 (1114)
.-+.|+++|.+.+-++....+...+||... ...+ ..++.. -....+.+.|+..... -
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L--~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPL--VVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccce--EEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 357799999998888887888999999871 1111 112221 2235777888754331 1
Q ss_pred EEEEecCCCCEEEEeCCCCcc-----eeEee-ccccC-EEEEeeccCCCceEEEEEe-cCCeEEEEEcCCCCCee--eec
Q 001248 481 CVITCGDDKTIKVWDATNGAK-----QYIFE-GHEAP-VYSVCPHHKENIQFIFSTA-LDGKIKAWLYDNLGSRV--DYE 550 (1114)
Q Consensus 481 ~l~s~~~d~~i~iwd~~~~~~-----~~~~~-~h~~~-v~~~~~~~~~~~~~l~s~~-~d~~i~~wd~~~~~~~~--~~~ 550 (1114)
.++.+++||+|.-|...-+.. ...+. +..+. -..+++.....+.+|+.+. ..++|.++|-.-..... .+.
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~ 181 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI 181 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence 367788999999998543222 11222 11122 3345554443345555554 47888888754221110 000
Q ss_pred CCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcC--
Q 001248 551 APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-- 628 (1114)
Q Consensus 551 ~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-- 628 (1114)
.+. + -.-+.|-+-..+. ..--+....-++++..=+.+..-|.|-+||. .|..++.+...+....-..++..|
T Consensus 182 DP~--i-PagyAPFnIqnig--~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~ 255 (336)
T TIGR03118 182 DPA--L-PAGYAPFNVQNLG--GTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPES 255 (336)
T ss_pred CCC--C-CCCCCCcceEEEC--CeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhh
Confidence 000 0 0011111100000 0001112222344444455666789999997 678888886555444556777755
Q ss_pred ----CCCEEEEEeCCCcEEEEEccCCccceeec
Q 001248 629 ----DGCLLAVSTNDNGIKILATSDGIRLLRTF 657 (1114)
Q Consensus 629 ----d~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 657 (1114)
.|.+|+---.||+|..+|..++ +.+-.+
T Consensus 256 FG~~sg~lLVGNFGDG~InaFD~~sG-~~~g~L 287 (336)
T TIGR03118 256 FGSLSGALLVGNFGDGTINAYDPQSG-AQLGQL 287 (336)
T ss_pred hCCCCCCeEEeecCCceeEEecCCCC-ceeeee
Confidence 5778887778999999999888 433333
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=92.94 E-value=2.7 Score=47.13 Aligned_cols=151 Identities=13% Similarity=0.060 Sum_probs=81.6
Q ss_pred CCeEEEEEecCCCcEEEEEe-----------CCC-cEEEEEccc--ce--EEEeecccccCeeEEEEcCCCCEEEEEeCC
Q 001248 860 PAATFLAFHPQDNNIIAIGM-----------DDS-SIQIYNVRV--DE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD 923 (1114)
Q Consensus 860 ~~i~~l~~sp~d~~~la~g~-----------~dg-~v~iwd~~~--~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D 923 (1114)
.....++|.+ +|+++++-. ..+ .|.+++-.. |+ ....+.......+++++.++| +++ ++.+
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC
Confidence 3467788888 787776542 223 677776543 22 223333334456889999998 444 4444
Q ss_pred CcEEEEeCCCCccc---cccccccCCCC-CCCCCCceEEEEccCCcEEEE-EeC-------------------CeEEEEE
Q 001248 924 SQLCVWSSDGWEKQ---KNRFLQIPTGR-TPTAQSDTRVQFHQDQIHFLV-VHE-------------------TQLAIFE 979 (1114)
Q Consensus 924 ~~v~iwd~~~~~~~---~~~~~~~~~~~-~~~~~~i~~v~fspdg~~l~~-~~d-------------------~~i~iwd 979 (1114)
...++.+.+..... ....+..+... ....+....++|.|||.+.++ +.. +.+.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 43334454432111 11122222111 001135678999999988776 421 3355555
Q ss_pred cCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcC
Q 001248 980 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD 1016 (1114)
Q Consensus 980 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D 1016 (1114)
..+++. ..+ ..+ -.....++|+++|+++++-..+
T Consensus 171 pdg~~~-e~~-a~G-~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 171 PDGGKL-RVV-AHG-FQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred cCCCeE-EEE-ecC-cCCCccceECCCCCEEEEccCC
Confidence 554432 222 223 3456789999999987765433
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.80 E-value=6.5 Score=45.87 Aligned_cols=184 Identities=10% Similarity=-0.027 Sum_probs=89.6
Q ss_pred eCCCEEEEEe-C-----CeEEEEEcCCCccc--cccCCCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEEcccc--eEE
Q 001248 828 KNDSYVMSAS-G-----GKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVD--EVK 895 (1114)
Q Consensus 828 ~d~~~l~~~~-d-----g~i~iwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~la~g~~dg--~v~iwd~~~~--~~~ 895 (1114)
.++..+++|+ + .++..||..+.+.. ..+........ ++ .- ++.+.++|+.++ .+..||..++ ..+
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~-~v-~~-~~~iYviGG~~~~~sve~ydp~~n~W~~~ 346 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYAS-GV-PA-NNKLYVVGGLPNPTSVERWFHGDAAWVNM 346 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcce-EE-EE-CCEEEEECCcCCCCceEEEECCCCeEEEC
Confidence 4556666665 3 24777887764432 22221111222 22 23 788888888643 5888887654 333
Q ss_pred EeecccccCeeEEEEcCCCCEEEEEeCCC---cEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeC
Q 001248 896 SKLKGHSKRITGLAFSHALNVLVSSGADS---QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE 972 (1114)
Q Consensus 896 ~~l~~h~~~V~~l~~s~d~~~l~s~s~D~---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d 972 (1114)
..+.........++ -+|+..+.||.++ ++..||..+.+ +.......... -...+..-+|+..+.|
T Consensus 347 ~~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~---W~~~~~m~~~r-----~~~~~~~~~~~IYv~G-- 414 (480)
T PHA02790 347 PSLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQ---WQFGPSTYYPH-----YKSCALVFGRRLFLVG-- 414 (480)
T ss_pred CCCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCE---EEeCCCCCCcc-----ccceEEEECCEEEEEC--
Confidence 33322111222222 3678888888654 46778876532 22221111110 0112223456555555
Q ss_pred CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcC-----CeEEEEEcCCCe
Q 001248 973 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLK 1028 (1114)
Q Consensus 973 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D-----g~I~vwd~~~~~ 1028 (1114)
|.+.+||..+.+-...-......... +++ .-+|+..+.|+.+ ..|.+||..+++
T Consensus 415 G~~e~ydp~~~~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 415 RNAEFYCESSNTWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred CceEEecCCCCcEeEcCCCCCCcccc-EEE-EECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 35778888766543222111101111 222 2366666777654 245566655543
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.70 E-value=5.9 Score=47.28 Aligned_cols=191 Identities=13% Similarity=0.119 Sum_probs=90.6
Q ss_pred CCcEEEEEeCCC------cEEEEEcccceEE--EeecccccCeeEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCccc
Q 001248 871 DNNIIAIGMDDS------SIQIYNVRVDEVK--SKLKGHSKRITGLAFSHALNVLVSSGAD-----SQLCVWSSDGWEKQ 937 (1114)
Q Consensus 871 d~~~la~g~~dg------~v~iwd~~~~~~~--~~l~~h~~~V~~l~~s~d~~~l~s~s~D-----~~v~iwd~~~~~~~ 937 (1114)
++.+++.|+.++ .+..||..+++-. ..+.........+.+ +++.++.||.+ ..+..||..+++
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~-- 369 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESK-- 369 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCc--
Confidence 445555555432 4667777665422 112211122222232 67788888876 346778877643
Q ss_pred cccccccCCCCCCCCCCceEEEEccCCcEEEEEe---C----CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEE
Q 001248 938 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH---E----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLV 1010 (1114)
Q Consensus 938 ~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~---d----~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 1010 (1114)
+........ + ..-.++ ..-+++..+.|+ + ..+..||..+.+-...-.... ...-.+ +...+++..
T Consensus 370 -W~~~~~lp~--~--r~~~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~-~r~~~~-~~~~~~~iy 441 (534)
T PHA03098 370 -WREEPPLIF--P--RYNPCV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPI-SHYGGC-AIYHDGKIY 441 (534)
T ss_pred -eeeCCCcCc--C--CccceE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCc-cccCce-EEEECCEEE
Confidence 222111111 0 011122 233556555543 1 358889987764432211110 111112 223356666
Q ss_pred EEEEcC--------CeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCC-----CcEEEEec
Q 001248 1011 YACFLD--------ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----GGVHVFEP 1077 (1114)
Q Consensus 1011 ~s~s~D--------g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~D-----g~v~vW~i 1077 (1114)
+.|+.+ ..+.+||..+++-...-. ...+.. .. . .+.+ ++.+++.|+.+ +.+.++|+
T Consensus 442 v~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~--~~~~r~--~~--~--~~~~---~~~iyv~GG~~~~~~~~~v~~yd~ 510 (534)
T PHA03098 442 VIGGISYIDNIKVYNIVESYNPVTNKWTELSS--LNFPRI--NA--S--LCIF---NNKIYVVGGDKYEYYINEIEVYDD 510 (534)
T ss_pred EECCccCCCCCcccceEEEecCCCCceeeCCC--CCcccc--cc--e--EEEE---CCEEEEEcCCcCCcccceeEEEeC
Confidence 666543 238888988776443211 111111 11 1 2222 46777777765 46788887
Q ss_pred cCCCCcccC
Q 001248 1078 LESEGKWGV 1086 (1114)
Q Consensus 1078 ~~~~~~~~~ 1086 (1114)
.+.. |..
T Consensus 511 ~~~~--W~~ 517 (534)
T PHA03098 511 KTNT--WTL 517 (534)
T ss_pred CCCE--EEe
Confidence 7755 654
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.024 Score=61.16 Aligned_cols=147 Identities=18% Similarity=0.208 Sum_probs=97.3
Q ss_pred EEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEE
Q 001248 756 RLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMS 835 (1114)
Q Consensus 756 ~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~ 835 (1114)
...+-+.+..++.++.+..+..||-.... ... .........+++..++..+++
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq~----------------------~le-----~n~tg~aldm~wDkegdvlav 91 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQV----------------------ILE-----LNPTGKALDMAWDKEGDVLAV 91 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhcce----------------------ecc-----cCCchhHhhhhhccccchhhh
Confidence 34555666668888888777766532111 100 113444556777777877666
Q ss_pred Ee--CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCC
Q 001248 836 AS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA 913 (1114)
Q Consensus 836 ~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d 913 (1114)
.. .+.+.+||+.+...-..-.+....-.-+.|++ +...++.|...|.+.||+..+.+.+...-.|..+++++++.+.
T Consensus 92 lAek~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lE 170 (615)
T KOG2247|consen 92 LAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLE 170 (615)
T ss_pred hhhcCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEeccc
Confidence 55 68999999976432221122222222378999 8889999999999999998887766666669999999999987
Q ss_pred CCEEEEEeCCCcEEEEeC
Q 001248 914 LNVLVSSGADSQLCVWSS 931 (1114)
Q Consensus 914 ~~~l~s~s~D~~v~iwd~ 931 (1114)
+ +.+.++.|.++.+-..
T Consensus 171 d-~vil~dcd~~L~v~~q 187 (615)
T KOG2247|consen 171 D-YVILCDCDNTLSVTTQ 187 (615)
T ss_pred c-eeeecCcHHHHHHhhh
Confidence 5 5666777765554433
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.03 E-value=4.8 Score=39.13 Aligned_cols=178 Identities=10% Similarity=0.033 Sum_probs=93.9
Q ss_pred CCCEEEEEe---CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCe
Q 001248 829 NDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI 905 (1114)
Q Consensus 829 d~~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V 905 (1114)
+|.++.+.+ ...|++||+.+++.+....-....+..=-...-+..+.+..-.+|.-.+||..+.+++..+.. .+.=
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y-~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY-EGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc-CCcc
Confidence 555666554 367999999998877554322111111001110334445566789999999999888777653 3333
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCCCc
Q 001248 906 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLE 984 (1114)
Q Consensus 906 ~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~~~ 984 (1114)
++++- |+..|+.++...+++.-|.++-..... .....++..- ..+.-+-| -||...|- -.+..|...+..+|+
T Consensus 134 WgLt~--d~~~LimsdGsatL~frdP~tfa~~~~-v~VT~~g~pv--~~LNELE~-VdG~lyANVw~t~~I~rI~p~sGr 207 (262)
T COG3823 134 WGLTS--DDKNLIMSDGSATLQFRDPKTFAELDT-VQVTDDGVPV--SKLNELEW-VDGELYANVWQTTRIARIDPDSGR 207 (262)
T ss_pred eeeec--CCcceEeeCCceEEEecCHHHhhhcce-EEEEECCeec--ccccceee-eccEEEEeeeeecceEEEcCCCCc
Confidence 55554 566677776666777777655322111 1111111100 11112222 13444443 244445555666666
Q ss_pred eeeeeecC----------CCCcCeeEEEECCCCC-EEEEE
Q 001248 985 CVKQWVPR----------ESSAPITHATFSCDSQ-LVYAC 1013 (1114)
Q Consensus 985 ~~~~~~~~----------~h~~~v~~l~~s~dg~-~l~s~ 1013 (1114)
.+.-+... .|..-...+++.|++. ++++|
T Consensus 208 V~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 208 VVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 55443321 2345677899999884 45554
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=91.99 E-value=15 Score=39.21 Aligned_cols=171 Identities=12% Similarity=0.069 Sum_probs=95.4
Q ss_pred eEEEEEcCCCccccccCC------CCCCeEEEEEecCCC----cEEEEEe-CCCcEEEEEcccceEEEeecccc------
Q 001248 840 KISLFNMMTFKTMATFMP------PPPAATFLAFHPQDN----NIIAIGM-DDSSIQIYNVRVDEVKSKLKGHS------ 902 (1114)
Q Consensus 840 ~i~iwd~~~~~~~~~~~~------~~~~i~~l~~sp~d~----~~la~g~-~dg~v~iwd~~~~~~~~~l~~h~------ 902 (1114)
+|.+||+.+.+.++++.- ..+....+.+...++ .++.... ..+.|.|+|+.+++..+.+..+.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 688899999888776532 234577788776332 3443333 34589999999987655554322
Q ss_pred -------------cCeeEEEEcC---CCCEEEEEeCCCcEEEEeCCCCcccc-----cc----ccccCCCCCCCCCCceE
Q 001248 903 -------------KRITGLAFSH---ALNVLVSSGADSQLCVWSSDGWEKQK-----NR----FLQIPTGRTPTAQSDTR 957 (1114)
Q Consensus 903 -------------~~V~~l~~s~---d~~~l~s~s~D~~v~iwd~~~~~~~~-----~~----~~~~~~~~~~~~~~i~~ 957 (1114)
+.+.+++.+| ++++|.-..-.+ -++|.+.+.-... .. ..+.. +... .....
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~--~~s~g 190 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKG--SQSDG 190 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE-----SECE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceec-cccC--CCCce
Confidence 2366666655 666776665444 2445544321111 00 00110 1100 23467
Q ss_pred EEEccCCcEEEE-EeCCeEEEEEcCCCc---eeeeeecCCC-CcCeeEEEECC--CCCEEEEEE
Q 001248 958 VQFHQDQIHFLV-VHETQLAIFETTKLE---CVKQWVPRES-SAPITHATFSC--DSQLVYACF 1014 (1114)
Q Consensus 958 v~fspdg~~l~~-~~d~~i~iwd~~~~~---~~~~~~~~~h-~~~v~~l~~s~--dg~~l~s~s 1014 (1114)
++++++|.+..+ .....|..|+..+.- ....+..+.. -..+..+.+.+ +|.+.+.++
T Consensus 191 ~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 191 MAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp EEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred EEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence 899999998888 588899999988622 2222322222 35678888888 776655543
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.91 E-value=25 Score=41.40 Aligned_cols=181 Identities=10% Similarity=0.094 Sum_probs=93.9
Q ss_pred CeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEe--e--cccccCeeEEEEcCCC
Q 001248 839 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK--L--KGHSKRITGLAFSHAL 914 (1114)
Q Consensus 839 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~--l--~~h~~~V~~l~~s~d~ 914 (1114)
-.|+||++. |..+..+.-....+..+.|+. +. -|++...+|++++|++.. +.+.. . ......|....|...|
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~-~e-eLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~G 139 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSD-DE-ELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNG 139 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeecccC-Cc-eEEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCc
Confidence 348888874 565555443344889999996 44 555677999999999863 22222 1 1122334444444455
Q ss_pred CEEEEEeCCCcEEE-EeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE--EeC---C-eEEEEEcCCCceee
Q 001248 915 NVLVSSGADSQLCV-WSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHE---T-QLAIFETTKLECVK 987 (1114)
Q Consensus 915 ~~l~s~s~D~~v~i-wd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~--~~d---~-~i~iwd~~~~~~~~ 987 (1114)
++.-..+|++.+ -+.+.... ..+...++... .-.+....+++..... .-+ + .+..-+....+...
T Consensus 140 --Vavlt~~g~v~~i~~~~~~~~---~~~~diP~~~~---~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~ 211 (829)
T KOG2280|consen 140 --VAVLTVSGQVILINGVEEPKL---RKMPDIPYNEL---PKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHA 211 (829)
T ss_pred --eEEEecCCcEEEEcCCCcchh---hhCCCCCCccC---CCcceeEecCCCcceeEEeechhhhhcccceecccccccc
Confidence 333333444433 33322110 11111111110 1123333333222111 111 0 01111111111111
Q ss_pred eeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeC
Q 001248 988 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 988 ~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
+. .-.+.+..+.+||+.++|+-=..+|.|.+-+.+..+..+.+.
T Consensus 212 -~~--~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 212 -LS--WPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred -cC--CCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 11 113578889999999999999999999999999888888776
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=91.89 E-value=23 Score=38.91 Aligned_cols=162 Identities=11% Similarity=0.110 Sum_probs=91.2
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCc------EEEEEccc--c--eEE-----Eeeccccc--------CeeEEEEcCCCC
Q 001248 859 PPAATFLAFHPQDNNIIAIGMDDSS------IQIYNVRV--D--EVK-----SKLKGHSK--------RITGLAFSHALN 915 (1114)
Q Consensus 859 ~~~i~~l~~sp~d~~~la~g~~dg~------v~iwd~~~--~--~~~-----~~l~~h~~--------~V~~l~~s~d~~ 915 (1114)
-+.+..+.+.+.++. +++.+++|. ++.+++.. + ..+ ..+..-.+ ..-+|++.++|.
T Consensus 19 ~GGlSgl~~~~~~~~-~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGR-FYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCE-EEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 345788888873454 445566777 66665543 1 001 11222112 233788888888
Q ss_pred EEEEEeCC------CcEEEEeCCCCccccccccccCC---------CCCCCCCCceEEEEccCCcEEEEE------eCC-
Q 001248 916 VLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPT---------GRTPTAQSDTRVQFHQDQIHFLVV------HET- 973 (1114)
Q Consensus 916 ~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~~---------~~~~~~~~i~~v~fspdg~~l~~~------~d~- 973 (1114)
++++.=.+ ..|..++.+ +...... ..+. ..........+++++|||+.|.++ .|+
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~--~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~ 174 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRF--PVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGP 174 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceE--ccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCc
Confidence 88887777 778888876 3332211 1111 112233577899999999955542 232
Q ss_pred -e-------EE--EEEcCC-Cceeeeeec--CC-----CCcCeeEEEECCCCCEEEEEE-----cCCeEEEEEc
Q 001248 974 -Q-------LA--IFETTK-LECVKQWVP--RE-----SSAPITHATFSCDSQLVYACF-----LDATVCVFSA 1024 (1114)
Q Consensus 974 -~-------i~--iwd~~~-~~~~~~~~~--~~-----h~~~v~~l~~s~dg~~l~s~s-----~Dg~I~vwd~ 1024 (1114)
. ++ .||..+ ++....+.. +. ....|+.+.+-+|+++|+.-= ....++|+.+
T Consensus 175 ~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v 248 (326)
T PF13449_consen 175 RANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRV 248 (326)
T ss_pred ccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEE
Confidence 1 34 455554 333443332 21 356789999999999877422 2344555544
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=91.77 E-value=8.4 Score=42.62 Aligned_cols=155 Identities=15% Similarity=0.132 Sum_probs=88.7
Q ss_pred EEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCC------CceEEEEEecCCeEEEEEcCCCC
Q 001248 471 IAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE------NIQFIFSTALDGKIKAWLYDNLG 544 (1114)
Q Consensus 471 v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~------~~~~l~s~~~d~~i~~wd~~~~~ 544 (1114)
+-...++..+++..|+....++--|++.|+.+..+.-|...+ +.+.|.. +.+.|+-. .+..|.-.|.+..+
T Consensus 472 ~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlvGl-S~~svFrIDPR~~g 548 (776)
T COG5167 472 IMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLVGL-SDYSVFRIDPRARG 548 (776)
T ss_pred ceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEEee-cccceEEecccccC
Confidence 333334444466777778889999999999999998776664 3443332 12234433 34444444544332
Q ss_pred CeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeE
Q 001248 545 SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRI 624 (1114)
Q Consensus 545 ~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 624 (1114)
..............-.|+.- ......++++++..|.|++||.-..+....+++-+. .|..+
T Consensus 549 NKi~v~esKdY~tKn~Fss~-----------------~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~--aIk~i 609 (776)
T COG5167 549 NKIKVVESKDYKTKNKFSSG-----------------MTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGD--AIKHI 609 (776)
T ss_pred Cceeeeeehhcccccccccc-----------------ccccCceEEEecCCCceeeehhhcchhhhcCccccc--ceeee
Confidence 11111111111111111111 011234799999999999999644444444444443 68889
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcc
Q 001248 625 RFNKDGCLLAVSTNDNGIKILATS 648 (1114)
Q Consensus 625 ~~s~d~~~l~~~~~dg~i~iwd~~ 648 (1114)
..+.+|+++++.+. ..+.+-|+.
T Consensus 610 dvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 610 DVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred EeecCCcEEEEeec-ceEEEEecc
Confidence 99999999887765 567777654
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.74 E-value=2.4 Score=51.46 Aligned_cols=98 Identities=13% Similarity=0.137 Sum_probs=64.3
Q ss_pred CccEEEEeeCCC--EEEEEeCCeEEEEEcCCCcc-ccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEE
Q 001248 820 AVPCFALSKNDS--YVMSASGGKISLFNMMTFKT-MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 896 (1114)
Q Consensus 820 ~v~~v~~s~d~~--~l~~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~ 896 (1114)
...++.|+|.-. .++...|+.|++.-+.-... ...+. .....++++|+| .|+.+++|...|++.-|... ++...
T Consensus 157 f~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~-leik~ 233 (1405)
T KOG3630|consen 157 FQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPS-LEIKS 233 (1405)
T ss_pred ccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-cccceeeEEecc-ccceeeEecCCCeEEEeecc-cceee
Confidence 345566666433 33333488888887653222 22222 456789999999 99999999999999988754 33333
Q ss_pred eecc----cccCeeEEEEcCCCCEEEEE
Q 001248 897 KLKG----HSKRITGLAFSHALNVLVSS 920 (1114)
Q Consensus 897 ~l~~----h~~~V~~l~~s~d~~~l~s~ 920 (1114)
.+.+ ....|.+|+|-....+|++-
T Consensus 234 ~ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 234 EIPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred cccCCCcCCCcceeEEEEecceeEEEEe
Confidence 3322 14679999998776676653
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.64 E-value=25 Score=38.78 Aligned_cols=156 Identities=12% Similarity=0.048 Sum_probs=86.7
Q ss_pred ccCeeEEEEcCCCCEEEEEeCCCcEEE-EeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEc
Q 001248 902 SKRITGLAFSHALNVLVSSGADSQLCV-WSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFET 980 (1114)
Q Consensus 902 ~~~V~~l~~s~d~~~l~s~s~D~~v~i-wd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~ 980 (1114)
...+.++.+.+++.+++++ ..|.+.. ++-. ++ .+..+... ....+..+.+.+++..++++..|.+.+=..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~g-g~--tW~~~~~~-----~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~ 242 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEPG-QT--AWTPHQRN-----SSRRLQSMGFQPDGNLWMLARGGQIRFNDP 242 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcCCC-CC--eEEEeeCC-----CcccceeeeEcCCCCEEEEecCCEEEEccC
Confidence 4568899999988666554 4554432 2211 11 11122111 113678999999999988887776653234
Q ss_pred CCCceeeeeecC--CCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCC
Q 001248 981 TKLECVKQWVPR--ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ 1058 (1114)
Q Consensus 981 ~~~~~~~~~~~~--~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 1058 (1114)
..+..-...... .....+.++.+.+++..++++ .+|.|. ...+.|+.-.........+. ..+ .+.|..
T Consensus 243 d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~-----~~~--~~~~~~- 312 (334)
T PRK13684 243 DDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPS-----NFY--KIVFLD- 312 (334)
T ss_pred CCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCc-----ceE--EEEEeC-
Confidence 444332221111 113457889999988766544 577665 45566655443321111111 133 666664
Q ss_pred CCCeEEEEeCCCcEEEEec
Q 001248 1059 EPNEFALGLSDGGVHVFEP 1077 (1114)
Q Consensus 1059 d~~~l~s~~~Dg~v~vW~i 1077 (1114)
++....++..|.|..|+-
T Consensus 313 -~~~~~~~G~~G~il~~~~ 330 (334)
T PRK13684 313 -PEKGFVLGQRGVLLRYVG 330 (334)
T ss_pred -CCceEEECCCceEEEecC
Confidence 344555667899887764
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.59 E-value=6.9 Score=38.07 Aligned_cols=183 Identities=12% Similarity=0.124 Sum_probs=98.5
Q ss_pred CCcEEEEEeCC--CcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEE-EEeCCCcEEEEeCCCCccccccccccCCC
Q 001248 871 DNNIIAIGMDD--SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLV-SSGADSQLCVWSSDGWEKQKNRFLQIPTG 947 (1114)
Q Consensus 871 d~~~la~g~~d--g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~~~~ 947 (1114)
+++++.+.+.- ..|++||+.+|+.+..-.-....+.+=-...-|.++. -.=.||.-.++|.++-+. +.....
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~-----lg~~~y 129 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEE-----LGRFSY 129 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhh-----hccccc
Confidence 56667665543 3799999999887754332222222111111122222 223467778888877332 211111
Q ss_pred CCCCCCCceEEEEccCCcEEEEE-eCCeEEEEEcCCCceeeeeecCCCCcCeeE---EEECCCCCEEEEEEcCCeEEEEE
Q 001248 948 RTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITH---ATFSCDSQLVYACFLDATVCVFS 1023 (1114)
Q Consensus 948 ~~~~~~~i~~v~fspdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~---l~~s~dg~~l~s~s~Dg~I~vwd 1023 (1114)
.-..-....|++-|+.+ +...+..-|.++..............+|.. +-|- ||...|-.-.+..|..-|
T Consensus 130 ------~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~ 202 (262)
T COG3823 130 ------EGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARID 202 (262)
T ss_pred ------CCcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEc
Confidence 11234445566666654 445566667666555444332222333332 3332 676666666667777788
Q ss_pred cCCCeeeEEeCCCcccCCC----CCCCCccceEEEecCCCCCeEEEEe
Q 001248 1024 AANLKLRCRINPSAYLPAG----VSSSNVHPLVIAAHPQEPNEFALGL 1067 (1114)
Q Consensus 1024 ~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~d~~~l~s~~ 1067 (1114)
.++|+.+..+..+...+.- .+....+ .+++.|+.+++++||-
T Consensus 203 p~sGrV~~widlS~L~~~~~~~~~~~nvlN--GIA~~~~~~r~~iTGK 248 (262)
T COG3823 203 PDSGRVVAWIDLSGLLKELNLDKSNDNVLN--GIAHDPQQDRFLITGK 248 (262)
T ss_pred CCCCcEEEEEEccCCchhcCcccccccccc--ceeecCcCCeEEEecC
Confidence 8999988877644332221 1112233 7899997667888874
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=91.54 E-value=9.8 Score=42.78 Aligned_cols=203 Identities=13% Similarity=0.061 Sum_probs=107.5
Q ss_pred EEEEEeCCCcEEEEEcccceEEEeeccc--ccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCC
Q 001248 874 IIAIGMDDSSIQIYNVRVDEVKSKLKGH--SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPT 951 (1114)
Q Consensus 874 ~la~g~~dg~v~iwd~~~~~~~~~l~~h--~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 951 (1114)
.+.++..+|.|.-.|..+++.+.....- ...+.+-.+..+|+ ++.++.++.+..+|..+++..-...... .
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~---~--- 142 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG---S--- 142 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC---C---
Confidence 3444577888888888887755332211 12222223333665 7778888888888887655433222211 0
Q ss_pred CCCceEEEEccCCcEEEEEeCCeEEEEEcCCCceeeeeecCC-CCcCeeEEEECCCCCEEEEEEc--CCeEEEEEcCCCe
Q 001248 952 AQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRE-SSAPITHATFSCDSQLVYACFL--DATVCVFSAANLK 1028 (1114)
Q Consensus 952 ~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~-h~~~v~~l~~s~dg~~l~s~s~--Dg~I~vwd~~~~~ 1028 (1114)
-.+..-.+-.++..++.+.++.+...|..+|+..-...... -...+..-....++ .++.+.. ++.+.-.|..+|.
T Consensus 143 -~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~ 220 (370)
T COG1520 143 -PYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALNAEDGT 220 (370)
T ss_pred -eEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEEccCCc
Confidence 01222233334444444456777777777777654433211 01111111112233 3444544 6677778888888
Q ss_pred eeEEeCCCcccCCCCC--CCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCCCcccCCCC
Q 001248 1029 LRCRINPSAYLPAGVS--SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPP 1089 (1114)
Q Consensus 1029 ~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~~~~~~~~~ 1089 (1114)
..-............. ...+..-.+- . +..+..++.+|.+...+..+++..|+.+.+
T Consensus 221 ~~w~~~~~~~~~~~~~~~~~~~~~~~v~-v---~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 221 LKWSQKVSQTIGRTAISTTPAVDGGPVY-V---DGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred EeeeeeeecccCcccccccccccCceEE-E---CCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 8876432222221100 0001111111 1 233577888999999999999999999887
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=91.42 E-value=2.7 Score=48.18 Aligned_cols=77 Identities=16% Similarity=0.316 Sum_probs=53.2
Q ss_pred CCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCC
Q 001248 420 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG 499 (1114)
Q Consensus 420 ~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 499 (1114)
...++++.-+|.|+.++.+..||+|++|++......+ +.....+-..+.|...| +++...|..+.-|. ++|
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qsk----i~~~~~p~~nlv~tnhg----l~~~tsdrr~la~~-~dg 84 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSK----ICEEAKPKENLVFTNHG----LVTATSDRRALAWK-EDG 84 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhh----hhhhcCCccceeeeccc----eEEEeccchhheee-ccC
Confidence 3467788888999999999999999999987644321 22233345567776554 56677788888887 556
Q ss_pred cceeEe
Q 001248 500 AKQYIF 505 (1114)
Q Consensus 500 ~~~~~~ 505 (1114)
-..+.+
T Consensus 85 vvqqqf 90 (1636)
T KOG3616|consen 85 VVQQQF 90 (1636)
T ss_pred cchhhc
Confidence 444444
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.41 E-value=0.44 Score=55.69 Aligned_cols=163 Identities=13% Similarity=0.125 Sum_probs=93.2
Q ss_pred CCCCceEEEEc----CCCCeEEEEEecCCcEEEEEcC--CcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEE--
Q 001248 357 QGSSPMSMDFH----PVQQTLLLVGTNVGDIGLWEVG--SRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW-- 428 (1114)
Q Consensus 357 h~~~v~~v~~s----pdg~~ll~tg~~dg~v~iwd~~--~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~-- 428 (1114)
..+.|-.++|- |.+.. .-|...||+++ .|+......+++. ..-...+.-|.|
T Consensus 131 f~G~v~dl~fah~~~pk~~~------~vg~lfVy~vd~l~G~iq~~l~v~~~--------------~p~gs~~~~V~wcp 190 (1283)
T KOG1916|consen 131 FPGGVGDLQFAHTKCPKGRR------LVGELFVYDVDVLQGEIQPQLEVTPI--------------TPYGSDPQLVSWCP 190 (1283)
T ss_pred CCCCcccccccccCChHHHH------HhhhhheeehHhhccccccceEEeec--------------CcCCCCcceeeecc
Confidence 45566666663 33432 23677888875 3444433333222 222223334444
Q ss_pred -cCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEe-----------cCCCCeeEEEEecCCCCEEEEeC
Q 001248 429 -SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF-----------SHPNKQLCVITCGDDKTIKVWDA 496 (1114)
Q Consensus 429 -spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~-----------s~d~~~~~l~s~~~d~~i~iwd~ 496 (1114)
-++.-++..+-.+++|++.++++...- -+.+|...+..++| ||||+ .++++..||.++.|-+
T Consensus 191 ~~~~~~~ic~~~~~~~i~lL~~~ra~~~----l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 191 IAVNKVYICYGLKGGEIRLLNINRALRS----LFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAISDGSVGFYQI 264 (1283)
T ss_pred cccccceeeeccCCCceeEeeechHHHH----HHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEeecCCccceeee
Confidence 447788888888999998877764431 35568887777665 78888 7888888888877765
Q ss_pred C-----CCcceeEeeccccCEEEEeeccCCCc---------eEEEEEec-CCeEEEEEcCCCCCe
Q 001248 497 T-----NGAKQYIFEGHEAPVYSVCPHHKENI---------QFIFSTAL-DGKIKAWLYDNLGSR 546 (1114)
Q Consensus 497 ~-----~~~~~~~~~~h~~~v~~~~~~~~~~~---------~~l~s~~~-d~~i~~wd~~~~~~~ 546 (1114)
. ...|+...+.|.+.-. +||.+..+. .++++++. +..+++|....-.+.
T Consensus 265 yi~g~~~~rclhewkphd~~p~-vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 265 YITGKIVHRCLHEWKPHDKHPR-VCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eeeccccHhhhhccCCCCCCCc-eeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 3 2345556666663322 233222211 23444443 556888865544433
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=91.28 E-value=0.72 Score=31.74 Aligned_cols=33 Identities=12% Similarity=0.220 Sum_probs=24.6
Q ss_pred eccCCCCceEEEEcCCCCeEEEEEecC--CcEEEE
Q 001248 354 TLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLW 386 (1114)
Q Consensus 354 ~~~h~~~v~~v~~spdg~~ll~tg~~d--g~v~iw 386 (1114)
.........+..|||||++|+.++..+ |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344566778999999999988888877 766666
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.27 E-value=8.3 Score=45.05 Aligned_cols=186 Identities=12% Similarity=0.092 Sum_probs=86.9
Q ss_pred CCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeee-EeeccccCCeeEEEecCCCCeeEEEEecCCCCEEE-Ee
Q 001248 418 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQH-LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV-WD 495 (1114)
Q Consensus 418 ~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~-~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~i-wd 495 (1114)
.|. .+..+.||.+..+|+ ...+|+++||++.... +... .........|..+.|..+|= .+.+. +|.+.+ -+
T Consensus 82 ~~~-~lI~mgWs~~eeLI~-v~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~~GV--avlt~--~g~v~~i~~ 154 (829)
T KOG2280|consen 82 KHG-ELIGMGWSDDEELIC-VQKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFHNGV--AVLTV--SGQVILING 154 (829)
T ss_pred cCC-CeeeecccCCceEEE-EeccceEEEeecchhh-hcccccccccccCceeEEEEecCce--EEEec--CCcEEEEcC
Confidence 344 888999997766554 5689999999987532 2110 11122333566666666554 33333 344433 33
Q ss_pred CCCCcceeEeec-cccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecc
Q 001248 496 ATNGAKQYIFEG-HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1114)
Q Consensus 496 ~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~ 574 (1114)
.... .++++.. ........||..-.++ +-.+ .+-++.-.-....+......+....+++..
T Consensus 155 ~~~~-~~~~~~diP~~~~~~~~Wt~~~~~-~~~~-------~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~--------- 216 (829)
T KOG2280|consen 155 VEEP-KLRKMPDIPYNELPKSCWTVFQPH-RQST-------ILLDVDVAVGLHICQVEESRVQLHALSWPN--------- 216 (829)
T ss_pred CCcc-hhhhCCCCCCccCCCcceeEecCC-Ccce-------eEEeechhhhhcccceecccccccccCCCC---------
Confidence 3221 2222221 0011111222211110 0000 111111000000111111222333333321
Q ss_pred cceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCC
Q 001248 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD 629 (1114)
Q Consensus 575 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d 629 (1114)
..+.-+.++|+.++++--...|.|.+-+.+..+....+....+..+ ..++|..+
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p-~qm~Wcgn 270 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPP-KQMAWCGN 270 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCch-HhceeecC
Confidence 1444566777777888888999999988887777666654333211 24555543
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=91.16 E-value=48 Score=41.29 Aligned_cols=174 Identities=11% Similarity=0.155 Sum_probs=102.5
Q ss_pred CCCCccEEEEe---e----CCCEEEEEeCCeEEEEEcCCCc---------------cccccC---CCCCCeEEEEEecCC
Q 001248 817 PEEAVPCFALS---K----NDSYVMSASGGKISLFNMMTFK---------------TMATFM---PPPPAATFLAFHPQD 871 (1114)
Q Consensus 817 ~~~~v~~v~~s---~----d~~~l~~~~dg~i~iwd~~~~~---------------~~~~~~---~~~~~i~~l~~sp~d 871 (1114)
...+|..|+|. . ..++|++-....+.|+...-.+ .+..+. ....+...++|+|.+
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~ 157 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD 157 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence 46778888887 2 2347777777778888732111 111111 123356677788777
Q ss_pred CcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCC
Q 001248 872 NNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPT 951 (1114)
Q Consensus 872 ~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 951 (1114)
...||+.+..|...||++..... .+. .. +-++....|+| +.|.+. +
T Consensus 158 ~~q~AiVD~~G~Wsvw~i~~~~~-----~~~-~~----------~~~~~~~~gsi-~~d~~e--------~--------- 203 (765)
T PF10214_consen 158 QRQFAIVDEKGNWSVWDIKGRPK-----RKS-SN----------LRLSRNISGSI-IFDPEE--------L--------- 203 (765)
T ss_pred cceEEEEeccCcEEEEEeccccc-----cCC-cc----------eeeccCCCccc-cCCCcc--------c---------
Confidence 77788888888888888721110 000 11 11111122222 222221 0
Q ss_pred CCCceEEEEccCCcEEEEEeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCC--CCEEEEEEcCCeEEEEEcCCC
Q 001248 952 AQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCD--SQLVYACFLDATVCVFSAANL 1027 (1114)
Q Consensus 952 ~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~d--g~~l~s~s~Dg~I~vwd~~~~ 1027 (1114)
..-..+.|.++-..|+++....+.++|+.+......+........|..+.-+++ +..++.. ...|...++...
T Consensus 204 -s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~~ 278 (765)
T PF10214_consen 204 -SNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKSS 278 (765)
T ss_pred -CcceeeEecCCCCEEEEEcCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccCC
Confidence 134578899998899999899999999988766442333344678999998887 3333333 367888888763
|
These proteins are found in fungi. |
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
Probab=91.00 E-value=31 Score=44.66 Aligned_cols=149 Identities=14% Similarity=0.198 Sum_probs=88.9
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
|-..++.|.-+++|.++=+ .|+.++.||..... |..- -..-...++.+.-.-||+..|
T Consensus 361 H~A~LTgv~~~~~ge~lRl---Hd~~LY~~d~~~~~---------Wk~~----------~~~~d~~~S~Ls~qgdG~lYA 418 (1774)
T PF11725_consen 361 HIAHLTGVHTDPDGEQLRL---HDDRLYQFDPNTAR---------WKPP----------PDKSDTPFSSLSRQGDGKLYA 418 (1774)
T ss_pred HHHHhhccccCCCCCeEEe---ecCceeeeccccce---------ecCC----------CCcccchhhhhcccCCCceEe
Confidence 6677888888888886332 68889999877642 2210 011223556666666777666
Q ss_pred EEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCc------c--eeEeecc
Q 001248 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA------K--QYIFEGH 508 (1114)
Q Consensus 437 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~------~--~~~~~~h 508 (1114)
.++. .|-|+..+.... ..-..+.+...+++|.- .+.++....++.+|++.... . ...+.+-
T Consensus 419 ---k~~~-~l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG 487 (1774)
T PF11725_consen 419 ---KDDD-TLVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADG 487 (1774)
T ss_pred ---cCCC-ceeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccCC
Confidence 2221 244555544221 12235677888899984 46777777778999987541 1 1123333
Q ss_pred ccCEEEEeeccCCCceEEEEEecCCeEEEEEcCC
Q 001248 509 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 542 (1114)
Q Consensus 509 ~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 542 (1114)
.....+|.+ +++ .|+....+|.++.=++..
T Consensus 488 ~a~A~~VgL--s~d--rLFvADseGkLYsa~l~~ 517 (1774)
T PF11725_consen 488 KAQAQSVGL--SND--RLFVADSEGKLYSADLPA 517 (1774)
T ss_pred chhhhheee--cCC--eEEEEeCCCCEEeccccc
Confidence 334555554 332 688888888887776654
|
It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas []. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=90.80 E-value=0.7 Score=32.20 Aligned_cols=32 Identities=19% Similarity=0.369 Sum_probs=27.7
Q ss_pred CCeEEEEEecCCC--cEEEEEeCCCcEEEEEccc
Q 001248 860 PAATFLAFHPQDN--NIIAIGMDDSSIQIYNVRV 891 (1114)
Q Consensus 860 ~~i~~l~~sp~d~--~~la~g~~dg~v~iwd~~~ 891 (1114)
+.|.++.|||..+ .+||..-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3689999998555 7999999999999999985
|
It contains a characteristic DLL sequence motif. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=90.59 E-value=1 Score=31.35 Aligned_cols=32 Identities=25% Similarity=0.304 Sum_probs=26.8
Q ss_pred CCeeEEEEcCC-C--CeEEEEeCCCeEEEEEccCC
Q 001248 421 VSVNRVIWSPD-G--SLFGVAYSRHIVQIYSYHGG 452 (1114)
Q Consensus 421 ~~V~~l~~spd-g--~~las~~~dg~i~iwd~~~~ 452 (1114)
++|.++.|||+ + .+|+.+-..|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 37899999984 4 58998888899999999863
|
It contains a characteristic DLL sequence motif. |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=90.50 E-value=13 Score=36.93 Aligned_cols=156 Identities=13% Similarity=0.186 Sum_probs=84.4
Q ss_pred CccEEEEeeCCCEEEEEeCCeEEEEEcC--CCccccccCCCCCCeEEEEEecCCCcEEEEEeCCC------cEEEE---E
Q 001248 820 AVPCFALSKNDSYVMSASGGKISLFNMM--TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS------SIQIY---N 888 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~~~~dg~i~iwd~~--~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg------~v~iw---d 888 (1114)
....++.+..+..+++.+..+|.+|++. ..+.+.++..- +.|..++++. .|++|++--++. .+|+| .
T Consensus 19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr 96 (215)
T PF14761_consen 19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWR 96 (215)
T ss_pred CcceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhh
Confidence 4455555554445555567889999988 33445556543 7799999999 899999864332 45665 2
Q ss_pred cc--cceEE-Eeeccc---------------------ccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccc--cccc
Q 001248 889 VR--VDEVK-SKLKGH---------------------SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK--NRFL 942 (1114)
Q Consensus 889 ~~--~~~~~-~~l~~h---------------------~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~--~~~~ 942 (1114)
.. ..+.+ ..+-|| +..+.+++-.|-..-|+.|+ ++++.+|.+....... ...+
T Consensus 97 ~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~l 175 (215)
T PF14761_consen 97 SQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFL 175 (215)
T ss_pred hhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEE
Confidence 22 11111 122232 23456666666444455554 4568999887643311 1111
Q ss_pred ccCCCCCCC--CCCceEEEEccCCcEEEEEeCCeEEEEEc
Q 001248 943 QIPTGRTPT--AQSDTRVQFHQDQIHFLVVHETQLAIFET 980 (1114)
Q Consensus 943 ~~~~~~~~~--~~~i~~v~fspdg~~l~~~~d~~i~iwd~ 980 (1114)
......... ...+..++| -+.|+|..++..++++.+
T Consensus 176 DFe~~l~~~~~~~~p~~v~i--c~~yiA~~s~~ev~Vlkl 213 (215)
T PF14761_consen 176 DFERSLIDHIDNFKPTQVAI--CEGYIAVMSDLEVLVLKL 213 (215)
T ss_pred echhhhhheecCceEEEEEE--EeeEEEEecCCEEEEEEE
Confidence 111000000 001122222 467888888888887765
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.49 E-value=24 Score=36.57 Aligned_cols=150 Identities=14% Similarity=0.088 Sum_probs=89.9
Q ss_pred ccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCC--CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc---eE
Q 001248 821 VPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP--PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD---EV 894 (1114)
Q Consensus 821 v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~--~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~---~~ 894 (1114)
+..+.++. ++...+. +..++|.|+.+......+.. ..+.-.++.. .|++..++..|.-+.++|+.+- .+
T Consensus 89 ~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v---sGn~aYVadlddgfLivdvsdpssP~l 163 (370)
T COG5276 89 FADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV---SGNYAYVADLDDGFLIVDVSDPSSPQL 163 (370)
T ss_pred hheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe---cCCEEEEeeccCcEEEEECCCCCCcee
Confidence 44455544 3555555 67799999987665443321 1233445555 5678887876667788888753 34
Q ss_pred EEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCe
Q 001248 895 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQ 974 (1114)
Q Consensus 895 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~ 974 (1114)
..........-..++.| |++-..+..|+-+.|-|+...... .+.++......+..+..+++-.+++....+
T Consensus 164 agrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sP------vli~~~n~g~g~~sv~vsdnr~y~vvy~eg- 234 (370)
T COG5276 164 AGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSP------VLIGSYNTGPGTYSVSVSDNRAYLVVYDEG- 234 (370)
T ss_pred eeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCC------eEEEEEecCCceEEEEecCCeeEEEEcccc-
Confidence 44444444444667776 777778889999999999874321 122233322356777777776666654333
Q ss_pred EEEEEcCCCc
Q 001248 975 LAIFETTKLE 984 (1114)
Q Consensus 975 i~iwd~~~~~ 984 (1114)
+.+-|..+.+
T Consensus 235 vlivd~s~~s 244 (370)
T COG5276 235 VLIVDVSGPS 244 (370)
T ss_pred eEEEecCCCC
Confidence 4444544433
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=90.13 E-value=37 Score=38.20 Aligned_cols=151 Identities=9% Similarity=-0.013 Sum_probs=82.6
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCCc
Q 001248 905 ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLE 984 (1114)
Q Consensus 905 V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~ 984 (1114)
...+..++|+.+++.+..-..++-||-... .+..+.... ...+..+.|.++|..++++..|.+.. ....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~---~W~~~~~~~-----~~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~ 311 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQP---YWQPHNRAS-----ARRIQNMGWRADGGLWLLTRGGGLYV-SKGTGL 311 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCc---ceEEecCCC-----ccceeeeeEcCCCCEEEEeCCceEEE-ecCCCC
Confidence 445567788777766654333333443220 011122221 13578999999999998887777544 333333
Q ss_pred e-----eeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCC
Q 001248 985 C-----VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1059 (1114)
Q Consensus 985 ~-----~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d 1059 (1114)
. ........-...++++.|.+++..+++| .+|.+.... +.|+.-.+....... ....+ .+.|.+ +
T Consensus 312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~-----~~~ly--~v~f~~-~ 381 (398)
T PLN00033 312 TEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNI-----AANLY--SVKFFD-D 381 (398)
T ss_pred cccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCC-----Cccee--EEEEcC-C
Confidence 1 1211111112458999999888876655 678777654 555554333211111 11244 788875 2
Q ss_pred CCeEEEEeCCCcEEEE
Q 001248 1060 PNEFALGLSDGGVHVF 1075 (1114)
Q Consensus 1060 ~~~l~s~~~Dg~v~vW 1075 (1114)
+.....+.+|.|.-|
T Consensus 382 -~~g~~~G~~G~il~~ 396 (398)
T PLN00033 382 -KKGFVLGNDGVLLRY 396 (398)
T ss_pred -CceEEEeCCcEEEEe
Confidence 445555678887655
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=90.11 E-value=16 Score=42.75 Aligned_cols=185 Identities=7% Similarity=-0.024 Sum_probs=91.8
Q ss_pred CCcEEEEEeCCC-----cEEEEEcccce--EEEeecccccCeeEEEEcCCCCEEEEEeCC--CcEEEEeCCCCccccccc
Q 001248 871 DNNIIAIGMDDS-----SIQIYNVRVDE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD--SQLCVWSSDGWEKQKNRF 941 (1114)
Q Consensus 871 d~~~la~g~~dg-----~v~iwd~~~~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D--~~v~iwd~~~~~~~~~~~ 941 (1114)
++.++++|+.++ .+..||..+++ .+..+.........+. -++...+.||.+ .++..||..+++ +..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~---W~~ 345 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAA---WVN 345 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCe---EEE
Confidence 567778887653 57778877654 2223322222222222 367777888764 357788865532 222
Q ss_pred cccCCCCCCCCCCceEEEEccCCcEEEEE-eC---CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCC
Q 001248 942 LQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE---TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA 1017 (1114)
Q Consensus 942 ~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d---~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg 1017 (1114)
+...... .....+..-+|+..+.| .+ ..+..||..+.+-...-........ .++ ..-+|+..+.| |
T Consensus 346 ~~~l~~~-----r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~-~~~-~~~~~~IYv~G---G 415 (480)
T PHA02790 346 MPSLLKP-----RCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK-SCA-LVFGRRLFLVG---R 415 (480)
T ss_pred CCCCCCC-----CcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc-ceE-EEECCEEEEEC---C
Confidence 2211110 01112233456666663 33 3577888876644322111110111 122 23356655555 4
Q ss_pred eEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCC-----CcEEEEeccCCC
Q 001248 1018 TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----GGVHVFEPLESE 1081 (1114)
Q Consensus 1018 ~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~D-----g~v~vW~i~~~~ 1081 (1114)
.+.+||..+++-... . .++...... .++.. ++++.+.|+.+ .++.++|+.+.+
T Consensus 416 ~~e~ydp~~~~W~~~-~---~m~~~r~~~-----~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 416 NAEFYCESSNTWTLI-D---DPIYPRDNP-----ELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred ceEEecCCCCcEeEc-C---CCCCCcccc-----EEEEE--CCEEEEECCcCCCcccceEEEEECCCCe
Confidence 577899877654422 1 122111111 22222 56788888765 357788887755
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=90.04 E-value=14 Score=40.57 Aligned_cols=113 Identities=10% Similarity=0.116 Sum_probs=67.9
Q ss_pred ccCeeEEEEcCCCCEEEEEeCCCc------EEEEeCCCCc--ccc-----ccccccCCCCCC--CCCCceEEEEccCCcE
Q 001248 902 SKRITGLAFSHALNVLVSSGADSQ------LCVWSSDGWE--KQK-----NRFLQIPTGRTP--TAQSDTRVQFHQDQIH 966 (1114)
Q Consensus 902 ~~~V~~l~~s~d~~~l~s~s~D~~------v~iwd~~~~~--~~~-----~~~~~~~~~~~~--~~~~i~~v~fspdg~~ 966 (1114)
-+.+.+|.+.+++..++..+.++. +..+++.... ... ...+....+..- ......++++.++|.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 355778889866667777777777 6666655411 111 111111111110 0113468888888988
Q ss_pred EEEE-eC------CeEEEEEcCCCceeeeeecC-------------CCCcCeeEEEECCCCCEEEEEEc
Q 001248 967 FLVV-HE------TQLAIFETTKLECVKQWVPR-------------ESSAPITHATFSCDSQLVYACFL 1015 (1114)
Q Consensus 967 l~~~-~d------~~i~iwd~~~~~~~~~~~~~-------------~h~~~v~~l~~s~dg~~l~s~s~ 1015 (1114)
+++. .+ ..|..++.. |+....+... ..+...-+|+++|||+.|+++.+
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 8885 45 678888876 6655444211 13567889999999997776653
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=89.98 E-value=38 Score=38.10 Aligned_cols=152 Identities=9% Similarity=0.030 Sum_probs=84.1
Q ss_pred EEEEEecCCCcEEEEEeCCCcEEEEEccc--ceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccccc
Q 001248 863 TFLAFHPQDNNIIAIGMDDSSIQIYNVRV--DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNR 940 (1114)
Q Consensus 863 ~~l~~sp~d~~~la~g~~dg~v~iwd~~~--~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~ 940 (1114)
..+..++ ++.++++|..-..++-||--. .+.+ . ......++++.|.+++.+++++ .+|.+. |..+.++.-...
T Consensus 242 ~~v~~~~-dG~~~~vg~~G~~~~s~d~G~~~W~~~-~-~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~ 316 (398)
T PLN00033 242 STVNRSP-DGDYVAVSSRGNFYLTWEPGQPYWQPH-N-RASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDF 316 (398)
T ss_pred eeEEEcC-CCCEEEEECCccEEEecCCCCcceEEe-c-CCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCccccc
Confidence 4455666 777777665443333344321 1211 1 2234568999999998877655 566543 444433211000
Q ss_pred ccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCCceeeeee-cCCCCcCeeEEEECCCCCEEEEEEcCCeE
Q 001248 941 FLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV-PRESSAPITHATFSCDSQLVYACFLDATV 1019 (1114)
Q Consensus 941 ~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~-~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I 1019 (1114)
........ .....+..+.|.+++..++++..|.+.... ..|+.-.... ...-....+.+.|.++++.+++| .+|.|
T Consensus 317 ~f~~~~~~-~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~i 393 (398)
T PLN00033 317 DFEEADIK-SRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVL 393 (398)
T ss_pred ceeecccC-CCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEE
Confidence 01111000 011247889999999999999888776653 3333322111 12224578899998887776655 58877
Q ss_pred EEE
Q 001248 1020 CVF 1022 (1114)
Q Consensus 1020 ~vw 1022 (1114)
.-|
T Consensus 394 l~~ 396 (398)
T PLN00033 394 LRY 396 (398)
T ss_pred EEe
Confidence 655
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=89.46 E-value=8.3 Score=38.22 Aligned_cols=157 Identities=11% Similarity=0.080 Sum_probs=86.9
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE--e--CC---eEEEE
Q 001248 906 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--H--ET---QLAIF 978 (1114)
Q Consensus 906 ~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~--~--d~---~i~iw 978 (1114)
..++-+.. ..|..+.....|.+|++...+.. .+..+. +.+.|..+.++..|+||++- . .. .+|+|
T Consensus 21 ~~~c~~g~-d~Lfva~~g~~Vev~~l~~~~~~---~~~~F~----Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 21 TAVCCGGP-DALFVAASGCKVEVYDLEQEECP---LLCTFS----TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred ceeeccCC-ceEEEEcCCCEEEEEEcccCCCc---eeEEEc----chhheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence 34444432 34444456677999999843322 222221 22578999999999999992 1 22 45664
Q ss_pred ---EcC--CCceeeeeecCC---------------------CCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCee-eE
Q 001248 979 ---ETT--KLECVKQWVPRE---------------------SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL-RC 1031 (1114)
Q Consensus 979 ---d~~--~~~~~~~~~~~~---------------------h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~-~~ 1031 (1114)
+.. ..+.++.-. -| -+.++.+++-.|-..-|++|+ ++.+.+|.+..+.. ..
T Consensus 93 ~NWr~~~~~~~~v~vRi-aG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~ 170 (215)
T PF14761_consen 93 FNWRSQKEENSPVRVRI-AGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSE 170 (215)
T ss_pred EEhhhhcccCCcEEEEE-cccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecc
Confidence 222 112222110 01 144677888888666666675 67899998765444 21
Q ss_pred E---eCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEecc
Q 001248 1032 R---INPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1078 (1114)
Q Consensus 1032 ~---~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~ 1078 (1114)
. +.....+-.. +.. ..|..+++. +++++..+ +-.+++.++.
T Consensus 171 ~~~~lDFe~~l~~~-~~~-~~p~~v~ic---~~yiA~~s-~~ev~Vlkl~ 214 (215)
T PF14761_consen 171 KFSFLDFERSLIDH-IDN-FKPTQVAIC---EGYIAVMS-DLEVLVLKLE 214 (215)
T ss_pred cccEEechhhhhhe-ecC-ceEEEEEEE---eeEEEEec-CCEEEEEEEe
Confidence 1 1111111111 111 556677776 46777665 7777777763
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=88.99 E-value=23 Score=40.33 Aligned_cols=111 Identities=18% Similarity=0.183 Sum_probs=62.0
Q ss_pred CCeEEEEEecCCCcEEEEEeCCCcEEEEEcccce--EEEeec-----ccccCeeEEEEcCCC------CEEEEEe-C---
Q 001248 860 PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE--VKSKLK-----GHSKRITGLAFSHAL------NVLVSSG-A--- 922 (1114)
Q Consensus 860 ~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~--~~~~l~-----~h~~~V~~l~~s~d~------~~l~s~s-~--- 922 (1114)
.....|+|.| |+++|++--..|.|++++..++. .+..+. .-.+...+|+|+|+- .+|...- .
T Consensus 30 ~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~ 108 (454)
T TIGR03606 30 NKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG 108 (454)
T ss_pred CCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence 4578899999 88888766557999999865542 222121 124567899999874 2333321 1
Q ss_pred ------CCcEEEEeCCCC--cccc-ccccccCCCCCCCCCCceEEEEccCCcEEEEEeCC
Q 001248 923 ------DSQLCVWSSDGW--EKQK-NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET 973 (1114)
Q Consensus 923 ------D~~v~iwd~~~~--~~~~-~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~ 973 (1114)
...|.-|.+... .... ...+....... .+.-..++|.|||.+.++..|+
T Consensus 109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~--~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGN--DHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCccCCcEEEEEEecCCCCccccceEEEecCCCCC--CcCCceEEECCCCcEEEEECCC
Confidence 233544555421 1111 11121111110 1345789999999887774443
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=88.59 E-value=20 Score=41.64 Aligned_cols=148 Identities=14% Similarity=0.131 Sum_probs=74.4
Q ss_pred CCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEE
Q 001248 880 DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 959 (1114)
Q Consensus 880 ~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 959 (1114)
..+...++|.. |.++..+.........+...++|.+++..+ ..+..+|+....... .....+.. ..=..+.
T Consensus 126 ~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~v~~~---~~l~~~~~---~~HHD~~ 196 (477)
T PF05935_consen 126 SSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGKVIWE---YDLPGGYY---DFHHDID 196 (477)
T ss_dssp BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT--EEEE---EE--TTEE----B-S-EE
T ss_pred CCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCCEEEe---eecCCccc---ccccccE
Confidence 34455555533 444444433222222266778898887665 668888876532111 11111100 0014577
Q ss_pred EccCCcEEEEEe--------------CCeEEEEEcCCCceeeeeecCCCC-------------------------cCeeE
Q 001248 960 FHQDQIHFLVVH--------------ETQLAIFETTKLECVKQWVPRESS-------------------------APITH 1000 (1114)
Q Consensus 960 fspdg~~l~~~~--------------d~~i~iwd~~~~~~~~~~~~~~h~-------------------------~~v~~ 1000 (1114)
.-|+|++|+.+. +..|..+| .+|+.+..|....|- -.+.+
T Consensus 197 ~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Ns 275 (477)
T PF05935_consen 197 ELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINS 275 (477)
T ss_dssp E-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEE
T ss_pred ECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCc
Confidence 889999988754 23566777 788877776543331 24788
Q ss_pred EEECC-CCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCc
Q 001248 1001 ATFSC-DSQLVYACFLDATVCVFSAANLKLRCRINPSA 1037 (1114)
Q Consensus 1001 l~~s~-dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~ 1037 (1114)
+.+.+ ++.+|+++-.-..|...|..+++....+....
T Consensus 276 i~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 276 IDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp EEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred cEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 99988 44445544444589999999999988877443
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.34 E-value=2.6 Score=45.62 Aligned_cols=159 Identities=13% Similarity=0.070 Sum_probs=98.2
Q ss_pred CCCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccc-ccc-CCCCC----CeE-EEEEecCCCcEEEEEeCCCcEEEE-E
Q 001248 817 PEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM-ATF-MPPPP----AAT-FLAFHPQDNNIIAIGMDDSSIQIY-N 888 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~-~~~-~~~~~----~i~-~l~~sp~d~~~la~g~~dg~v~iw-d 888 (1114)
....+..+-..|||+.+..-+..++.++++.+.... +++ ...++ .|+ .+..-. +|.-|.+++.||-|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence 456688889999999999888889999998754322 121 11111 122 222223 67778889999998877 4
Q ss_pred cccc-e----EEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccC
Q 001248 889 VRVD-E----VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 963 (1114)
Q Consensus 889 ~~~~-~----~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspd 963 (1114)
+..+ + .++.++-...+|..+.--...+-+++-+..|++.++.....+..-. .. ....+..+++||.
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~---~~------~~~~~~~~~~Sp~ 368 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF---ER------AYQAPQLVAMSPN 368 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceeh---hh------hhcCcceeeeCcc
Confidence 4432 1 2222222223444333333445678888889988876544221111 00 0125678999999
Q ss_pred CcEEEEEeCCeEEEEEcCCCce
Q 001248 964 QIHFLVVHETQLAIFETTKLEC 985 (1114)
Q Consensus 964 g~~l~~~~d~~i~iwd~~~~~~ 985 (1114)
+.+|++-..|+++++.+++...
T Consensus 369 ~~~Ll~e~~gki~~~~l~Nr~P 390 (733)
T COG4590 369 QAYLLSEDQGKIRLAQLENRNP 390 (733)
T ss_pred cchheeecCCceEEEEecCCCC
Confidence 9999998889999998875443
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=88.34 E-value=12 Score=44.48 Aligned_cols=173 Identities=14% Similarity=0.153 Sum_probs=90.7
Q ss_pred CCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEE
Q 001248 830 DSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLA 909 (1114)
Q Consensus 830 ~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~ 909 (1114)
..+++++..+.|.||+........ ...++..+...| .+. ...|+.+..|- ..| .|+.|.
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p----~~~p~~~~~t~p---~~~--~~~D~~~s~~p----------~PH--tIN~i~ 107 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLP----SRKPCLRFDTKP---EFT--STPDRLISTWP----------FPH--TINFIK 107 (717)
T ss_pred CCEEEEEECCEEEEEecCCccccc----ccccccccccCc---ccc--ccccccccCCC----------CCc--eeeEEE
Confidence 778888889999999986432211 011112222222 111 12233222222 112 133332
Q ss_pred Ec--CCCCEEEEEeCCCcEEEEeCCCCcc----c-------cccccccCCCCCCCCCCceEEEEc--cCCcEEEEEeC-C
Q 001248 910 FS--HALNVLVSSGADSQLCVWSSDGWEK----Q-------KNRFLQIPTGRTPTAQSDTRVQFH--QDQIHFLVVHE-T 973 (1114)
Q Consensus 910 ~s--~d~~~l~s~s~D~~v~iwd~~~~~~----~-------~~~~~~~~~~~~~~~~~i~~v~fs--pdg~~l~~~~d-~ 973 (1114)
.. -+...|+.|..||.|.+|.++.--. . .......+.-+.....+..+++++ ...++||++.+ .
T Consensus 108 v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~ 187 (717)
T PF08728_consen 108 VGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQ 187 (717)
T ss_pred ecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCc
Confidence 22 2445677788888888886532100 0 000000000111122467889998 88899998755 4
Q ss_pred eEEEEEcCCC--ceeeeeecCCCCcCeeEEEECCCC---C---EEEEEEcCCeEEEEEc
Q 001248 974 QLAIFETTKL--ECVKQWVPRESSAPITHATFSCDS---Q---LVYACFLDATVCVFSA 1024 (1114)
Q Consensus 974 ~i~iwd~~~~--~~~~~~~~~~h~~~v~~l~~s~dg---~---~l~s~s~Dg~I~vwd~ 1024 (1114)
.|.||-.... +.... ....|...|-+|+|-++. . +|++++-.|.+.+|++
T Consensus 188 ~VTVFaf~l~~~r~~~~-~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 188 EVTVFAFALVDERFYHV-PSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eEEEEEEeccccccccc-cccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 5666544332 21111 112356789999997644 2 7888999999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.59 E-value=8.6 Score=48.69 Aligned_cols=67 Identities=12% Similarity=0.121 Sum_probs=41.6
Q ss_pred eEEEEccCCcEEEEEeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCee
Q 001248 956 TRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1029 (1114)
Q Consensus 956 ~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~ 1029 (1114)
.+..+......+.....+.+.+|+.........+...++. .+.++..++++..||.+.+||++.+.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 202 LQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQL-------ESRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ceeeeecCCCcceeeeeeeeeehhcccccchhhccccccc-------CccCCceEEEEEecCCEEeeecCCCce
Confidence 3333333444444444455555555444443344332222 288999999999999999999999866
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.25 E-value=3.5 Score=44.83 Aligned_cols=123 Identities=11% Similarity=0.128 Sum_probs=80.4
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
.+++|.++.||+|.+ +||+-..+.+|.+.+....+.....+ ...+.-+..|....|+.+ .-+|
T Consensus 65 d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~---------------~~ck~k~~~IlGF~W~~s-~e~A 127 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYT---------------QECKTKNANILGFCWTSS-TEIA 127 (657)
T ss_pred CCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHH---------------HHhccCcceeEEEEEecC-eeEE
Confidence 466999999999999 69999999999999985433221100 012223346899999866 6677
Q ss_pred EEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCC
Q 001248 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG 499 (1114)
Q Consensus 437 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 499 (1114)
.....| +-+|.+...+ +.......|+..|+--.|+++..-.+++|+-..+++.=+-+.++
T Consensus 128 ~i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 128 FITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred EEecCC-eEEEEEchhh--hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 766666 7777765432 22224567888999999999988533444434444444444443
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=87.13 E-value=57 Score=36.64 Aligned_cols=205 Identities=15% Similarity=0.114 Sum_probs=103.5
Q ss_pred EcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCCeEE
Q 001248 366 FHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQ 445 (1114)
Q Consensus 366 ~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~ 445 (1114)
.--||+ +.++..+|.|.-.|.+++..+ |.... . +....+..-.+..+|+ |..++.++.+.
T Consensus 65 ~~~dg~--v~~~~~~G~i~A~d~~~g~~~-------W~~~~---------~-~~~~~~~~~~~~~~G~-i~~g~~~g~~y 124 (370)
T COG1520 65 ADGDGT--VYVGTRDGNIFALNPDTGLVK-------WSYPL---------L-GAVAQLSGPILGSDGK-IYVGSWDGKLY 124 (370)
T ss_pred EeeCCe--EEEecCCCcEEEEeCCCCcEE-------ecccC---------c-CcceeccCceEEeCCe-EEEecccceEE
Confidence 344565 555678888888888888754 21110 0 0011222222222676 66677888888
Q ss_pred EEEccCCceeeeeEeecccc-CCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeecccc---CEEEEeeccCC
Q 001248 446 IYSYHGGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA---PVYSVCPHHKE 521 (1114)
Q Consensus 446 iwd~~~~~~~~~~~~l~~h~-~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~---~v~~~~~~~~~ 521 (1114)
..|..+|+..-.. .... ..+..-....++. +..++.++.+...|..+|+.......-.. .+..- .. ..
T Consensus 125 ~ld~~~G~~~W~~---~~~~~~~~~~~~v~~~~~---v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~-~~-~~ 196 (370)
T COG1520 125 ALDASTGTLVWSR---NVGGSPYYASPPVVGDGT---VYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGS-PA-IA 196 (370)
T ss_pred EEECCCCcEEEEE---ecCCCeEEecCcEEcCcE---EEEecCCCeEEEEEccCCcEEEEEecCCccccccccC-ce-ee
Confidence 8898888765532 2222 1122223333443 44444778888888888887766543221 11110 00 11
Q ss_pred CceEEEEEec--CCeEEEEEcCCCCCeeeecCCC----CeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCC
Q 001248 522 NIQFIFSTAL--DGKIKAWLYDNLGSRVDYEAPG----RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 595 (1114)
Q Consensus 522 ~~~~l~s~~~--d~~i~~wd~~~~~~~~~~~~~~----~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 595 (1114)
+ ..++.+.. ++.+.-.|..++.......... ..+........+ .+ .-+ ..++.++.+
T Consensus 197 ~-~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~-~v--------------~v~-~~~~~~~~~ 259 (370)
T COG1520 197 S-GTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGG-PV--------------YVD-GGVYAGSYG 259 (370)
T ss_pred c-ceEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCc-eE--------------EEC-CcEEEEecC
Confidence 2 24555544 4555555555544443321100 000000000000 00 001 124667778
Q ss_pred CeEEEEECCCcceEEEeccC
Q 001248 596 FSIKFWDMDSVQLLTSIDAD 615 (1114)
Q Consensus 596 g~i~iwd~~~~~~~~~~~~~ 615 (1114)
+.+...|..+++.+..+...
T Consensus 260 g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 260 GKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred CeEEEEEcCCCceEEEEecc
Confidence 88999999999998888653
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=87.12 E-value=58 Score=36.74 Aligned_cols=158 Identities=9% Similarity=0.094 Sum_probs=85.1
Q ss_pred CCCCeeEEEEecCCCCEEEEeCCCCcce--eE-e-eccccCEEEEeec---cCCCceEEEEEecCCeEEEEEcCCCCCee
Q 001248 475 HPNKQLCVITCGDDKTIKVWDATNGAKQ--YI-F-EGHEAPVYSVCPH---HKENIQFIFSTALDGKIKAWLYDNLGSRV 547 (1114)
Q Consensus 475 ~d~~~~~l~s~~~d~~i~iwd~~~~~~~--~~-~-~~h~~~v~~~~~~---~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 547 (1114)
++++. .++.||..|.++|++...+... .. + ..-..+|..+..- ...+ ...++.=.-+.+.+|.+.......
T Consensus 34 ~~~~d-~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~-~~~LaVLhP~kl~vY~v~~~~g~~ 111 (418)
T PF14727_consen 34 PSGSD-KIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSE-DLQLAVLHPRKLSVYSVSLVDGTV 111 (418)
T ss_pred CCCcc-EEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCC-cceEEEecCCEEEEEEEEecCCCc
Confidence 44444 6899999999999998654311 11 1 1245778777632 2222 233333556677777763221110
Q ss_pred eecCCCCeeEEEEEecCCCeEEeeecccceeEEEecC----C-CCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcC
Q 001248 548 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT----T-KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASP 622 (1114)
Q Consensus 548 ~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~----~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 622 (1114)
.++.. ..+. ..+..+-......+++-| . ..++.+-+.||.+.+|+-+.-.....+...- --.
T Consensus 112 ---~~g~~-~~L~------~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~l---lPg 178 (418)
T PF14727_consen 112 ---EHGNQ-YQLE------LIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFL---LPG 178 (418)
T ss_pred ---ccCcE-EEEE------EEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCC---CCc
Confidence 00100 0000 001111111111122211 1 2567778999999999977655444444321 123
Q ss_pred eEEEcCCCCEEEEEeCCCcEEEEEc
Q 001248 623 RIRFNKDGCLLAVSTNDNGIKILAT 647 (1114)
Q Consensus 623 ~~~~s~d~~~l~~~~~dg~i~iwd~ 647 (1114)
.+.|.+.-..+++++.+..+..|..
T Consensus 179 Pl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 179 PLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred CeEEeecCCEEEEecCceeEEEecH
Confidence 5888998888999998888877754
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.82 E-value=5.8 Score=49.41 Aligned_cols=146 Identities=14% Similarity=0.192 Sum_probs=93.8
Q ss_pred eCCCcEEEEEcccceEEEeecccccCeeEEEEc--------CCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCC--
Q 001248 879 MDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS--------HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR-- 948 (1114)
Q Consensus 879 ~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s--------~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~-- 948 (1114)
+.|..+.+|+++++.....+.+-+..|..|..- |.=++|...+.--.|.|+-+.-.+..... ..+..+
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~--~~f~~~~~ 173 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGEL--SIFNTSFK 173 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcc--ccccccee
Confidence 458899999999987788888877788777643 33344444444555777765433221111 111111
Q ss_pred -CCCCCCceEEEEccCCcEEEEEeCCeEEE--EEcCCC---c-eee-------------e-eec-CCCCcCeeEEEECCC
Q 001248 949 -TPTAQSDTRVQFHQDQIHFLVVHETQLAI--FETTKL---E-CVK-------------Q-WVP-RESSAPITHATFSCD 1006 (1114)
Q Consensus 949 -~~~~~~i~~v~fspdg~~l~~~~d~~i~i--wd~~~~---~-~~~-------------~-~~~-~~h~~~v~~l~~s~d 1006 (1114)
......|.++....+|+.+.+|.||.|.- |....+ + |.+ + +.. ..+..+|..+.+...
T Consensus 174 i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 174 ISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred eecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence 01124678888899999999998885542 222222 1 110 0 111 256779999999888
Q ss_pred CCEEEEEEcCCeEEEEEcCC
Q 001248 1007 SQLVYACFLDATVCVFSAAN 1026 (1114)
Q Consensus 1007 g~~l~s~s~Dg~I~vwd~~~ 1026 (1114)
-..|.+-+..|+|.+||+..
T Consensus 254 R~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cceeeeeccCceEEEEEccC
Confidence 88899999999999999976
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.73 E-value=12 Score=40.90 Aligned_cols=104 Identities=5% Similarity=0.067 Sum_probs=69.2
Q ss_pred cccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEc
Q 001248 901 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFET 980 (1114)
Q Consensus 901 h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~ 980 (1114)
..++|.++.||+|++.||+--.|.+|.+++....+........ +......|...+|+.. .-+|.-.+..+.+|-.
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~----ck~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v 139 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQE----CKTKNANILGFCWTSS-TEIAFITDQGIEFYQV 139 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHH----hccCcceeEEEEEecC-eeEEEEecCCeEEEEE
Confidence 4579999999999999999999999999998543322211111 1111235788889877 5566666666777765
Q ss_pred CCCc-eeeeeecCCCCcCeeEEEECCCCCEEE
Q 001248 981 TKLE-CVKQWVPRESSAPITHATFSCDSQLVY 1011 (1114)
Q Consensus 981 ~~~~-~~~~~~~~~h~~~v~~l~~s~dg~~l~ 1011 (1114)
...+ .++.. ..|+-.|.--.|.++-+.++
T Consensus 140 ~pekrslRlV--ks~~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 140 LPEKRSLRLV--KSHNLNVNWYMYCPETAVIL 169 (657)
T ss_pred chhhhhhhhh--hhcccCccEEEEccccceEe
Confidence 4332 22222 25677788888888887643
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.49 E-value=0.34 Score=52.82 Aligned_cols=118 Identities=21% Similarity=0.282 Sum_probs=86.2
Q ss_pred EeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCC
Q 001248 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1114)
-.+.-++..-.++|.-+|..+++.+-..+.+++||+.+..... +-.+-...-.-+.|++.+
T Consensus 69 le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq-------------------LE~gg~~s~sll~wsKg~ 129 (615)
T KOG2247|consen 69 LELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ-------------------LESGGTSSKSLLAWSKGT 129 (615)
T ss_pred cccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH-------------------HhccCcchHHHHhhccCC
Confidence 3334556667788888888777778888999999998754321 111222223338899999
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEe
Q 001248 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495 (1114)
Q Consensus 433 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd 495 (1114)
..++.+...|.+.|++..+.+... ....|...+.+++|.+.+. .+.++.|..+.+-.
T Consensus 130 ~el~ig~~~gn~viynhgtsR~ii---v~Gkh~RRgtq~av~lEd~---vil~dcd~~L~v~~ 186 (615)
T KOG2247|consen 130 PELVIGNNAGNIVIYNHGTSRRII---VMGKHQRRGTQIAVTLEDY---VILCDCDNTLSVTT 186 (615)
T ss_pred ccccccccccceEEEeccchhhhh---hhcccccceeEEEecccce---eeecCcHHHHHHhh
Confidence 999999999999999988766543 3444999999999999886 67787777665544
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=85.76 E-value=62 Score=35.77 Aligned_cols=198 Identities=10% Similarity=0.087 Sum_probs=104.7
Q ss_pred CCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEc----CCCCE--EEEEe-CC---CcEEEEeCCCCcccccc
Q 001248 871 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS----HALNV--LVSSG-AD---SQLCVWSSDGWEKQKNR 940 (1114)
Q Consensus 871 d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s----~d~~~--l~s~s-~D---~~v~iwd~~~~~~~~~~ 940 (1114)
...+++....++-+.+||+. |+.+..+. .++++.|..- -.|+. |+.++ ++ .+|++|.++..... ..
T Consensus 67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~ 142 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LT 142 (381)
T ss_dssp GG-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EE
T ss_pred ccceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ce
Confidence 44577777788899999987 44555553 2344444332 13433 44444 32 46999988742111 01
Q ss_pred ccccCCCC-CCCCCCceEEEEc--c-CCcEEEE--EeCCeEEEEEcC---CC----ceeeeeecCCCCcCeeEEEECCCC
Q 001248 941 FLQIPTGR-TPTAQSDTRVQFH--Q-DQIHFLV--VHETQLAIFETT---KL----ECVKQWVPRESSAPITHATFSCDS 1007 (1114)
Q Consensus 941 ~~~~~~~~-~~~~~~i~~v~fs--p-dg~~l~~--~~d~~i~iwd~~---~~----~~~~~~~~~~h~~~v~~l~~s~dg 1007 (1114)
.+...... ......+..+|+- + +|.+.+. ..+|.+..|.+. ++ +.++.|.. .+.+..+......
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~---~sQ~EGCVVDDe~ 219 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV---GSQPEGCVVDDET 219 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE----SS-EEEEEEETTT
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC---CCcceEEEEeccc
Confidence 11100000 0111245677763 3 4655444 577877777664 33 45777764 4478889998888
Q ss_pred CEEEEEEcCCeEEEEEcCC-----CeeeEEeCCCcccCCCCCCCCccceEEEecCC-CCCeEEEEeCCCcEEEEeccCCC
Q 001248 1008 QLVYACFLDATVCVFSAAN-----LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ-EPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1008 ~~l~s~s~Dg~I~vwd~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
.+|+.+-+|.-|+-|+.+- ++++..... ..+ ...+.-+++-..++ .+.+|+|.=.+++..||+.....
T Consensus 220 g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g-~~l-----~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~ 293 (381)
T PF02333_consen 220 GRLYVGEEDVGIWRYDAEPEGGNDRTLVASADG-DGL-----VADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPN 293 (381)
T ss_dssp TEEEEEETTTEEEEEESSCCC-S--EEEEEBSS-SSB------S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT-
T ss_pred CCEEEecCccEEEEEecCCCCCCcceeeecccc-ccc-----ccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCC
Confidence 8999999998888888752 233333221 111 22244445554442 23455555567899999987643
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=85.73 E-value=4.1 Score=39.83 Aligned_cols=31 Identities=32% Similarity=0.555 Sum_probs=25.1
Q ss_pred CCeeEEEEcCCC------CeEEEEeCCCeEEEEEccC
Q 001248 421 VSVNRVIWSPDG------SLFGVAYSRHIVQIYSYHG 451 (1114)
Q Consensus 421 ~~V~~l~~spdg------~~las~~~dg~i~iwd~~~ 451 (1114)
..|.+++|||-| -+||+.+.++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 379999999943 3688889999999998664
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=85.57 E-value=22 Score=40.37 Aligned_cols=64 Identities=16% Similarity=0.118 Sum_probs=41.0
Q ss_pred cCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCC
Q 001248 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1114)
Q Consensus 356 ~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1114)
..-...|.|+|.|||+ +|++-...|.|++++..++.......+ .......-.+....|+|+|+-
T Consensus 27 ~GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l------------~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 27 SGLNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTL------------PEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecC------------CceeccCCCCceeeEEECCCc
Confidence 3567789999999998 577654469999998765543211100 000111125678999999874
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=85.42 E-value=56 Score=34.97 Aligned_cols=147 Identities=14% Similarity=0.121 Sum_probs=81.0
Q ss_pred CEEEEeCCCCcceeEeec------cccCEEEEeeccCCC----ceEEEEEecCCeEEEEEcCCCCCeeeecCC-------
Q 001248 490 TIKVWDATNGAKQYIFEG------HEAPVYSVCPHHKEN----IQFIFSTALDGKIKAWLYDNLGSRVDYEAP------- 552 (1114)
Q Consensus 490 ~i~iwd~~~~~~~~~~~~------h~~~v~~~~~~~~~~----~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~------- 552 (1114)
.|.+||+.+++.++++.- ..+....+.+...+. +-..++-+..+.|.++|+.+++....+...
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 577889888888776642 235566666655332 223344444568999998875543322111
Q ss_pred ------------CCeeEEEEEec---CCCeEEe----------------------------------eecccceeEEEec
Q 001248 553 ------------GRWCTTMAYSA---DGTRTYQ----------------------------------GFRKRSLGVVQFD 583 (1114)
Q Consensus 553 ------------~~~v~~~~~s~---~g~~~~~----------------------------------~~~~~~v~~~~~~ 583 (1114)
...+..++.++ +++.++- |........+.++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D 194 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID 194 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEEC
Confidence 11255566655 5442221 1112244557788
Q ss_pred CCCCEEEEEeCCCeEEEEECCCcc---eEEEeccCCC-CCCcCeEEEcC--CCCEEEEE
Q 001248 584 TTKNRFLAAGDDFSIKFWDMDSVQ---LLTSIDADGG-LPASPRIRFNK--DGCLLAVS 636 (1114)
Q Consensus 584 ~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~-~~~v~~~~~s~--d~~~l~~~ 636 (1114)
++|+.+++--..+.|..|+..+.- ....+..... ......+.+.+ +|.+.+..
T Consensus 195 ~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 195 PNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp TTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 889988888899999999987621 2222222222 34556777777 66554444
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=85.31 E-value=3.1 Score=49.23 Aligned_cols=123 Identities=15% Similarity=0.167 Sum_probs=73.3
Q ss_pred eEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCC--CcccccccccCCCCCeeEEEEc--CCCCeEEEEeCCCeEEEE
Q 001248 372 TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGAC--SMPLQAALVKDPGVSVNRVIWS--PDGSLFGVAYSRHIVQIY 447 (1114)
Q Consensus 372 ~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~h~~~V~~l~~s--pdg~~las~~~dg~i~iw 447 (1114)
.+|+.+..||.|.+|.+++--...... .-+.... .......+...-...++.+++. ...++||++++...|.||
T Consensus 115 EVLl~c~DdG~V~~Yyt~~I~~~i~~~--~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 115 EVLLLCTDDGDVLAYYTETIIEAIERF--SEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred eEEEEEecCCeEEEEEHHHHHHHHHhh--ccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 378889999999999874311000000 0000000 0000011122234489999998 888999999998889988
Q ss_pred EccCCceeeeeEeeccccCCeeEEEecCCCC----eeEEEEecCCCCEEEEeC
Q 001248 448 SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNK----QLCVITCGDDKTIKVWDA 496 (1114)
Q Consensus 448 d~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~----~~~l~s~~~d~~i~iwd~ 496 (1114)
-............-..|...|-+|+|.++.. ...+++++-.|.+.+|++
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 7665211111111113666789999987651 136788899999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.30 E-value=62 Score=41.32 Aligned_cols=55 Identities=16% Similarity=0.128 Sum_probs=38.2
Q ss_pred EEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 589 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 589 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
.+.+...+.+-+|+.........+...++ ..+.++..++++..||.+.+||...+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~v~~h~Dgs~~fWd~s~g 266 (993)
T KOG1983|consen 212 ILIGFNRGLVVIKDRASKYVQSAYLPNGQ-------LESRDGSHFVSYHTDGSYAFWDVSSG 266 (993)
T ss_pred cceeeeeeeeeehhcccccchhhcccccc-------cCccCCceEEEEEecCCEEeeecCCC
Confidence 44555667777777655444444433322 12788999999999999999999887
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.28 E-value=76 Score=36.36 Aligned_cols=71 Identities=10% Similarity=0.170 Sum_probs=47.0
Q ss_pred CCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCC
Q 001248 420 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 498 (1114)
Q Consensus 420 ~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~ 498 (1114)
...|.++.+...|. +-+|+.|| +..||..+++.++. .......+|.++.-+-.|+ +..|+.+| |++.+.+.
T Consensus 164 d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql--~s~~~dk~I~al~~d~qg~---LWVGTdqG-v~~~e~~G 234 (671)
T COG3292 164 DTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQL--ASPPLDKAINALIADVQGR---LWVGTDQG-VYLQEAEG 234 (671)
T ss_pred CccceeeeeeccCc-EEEecCCc-ceEEccccceEEEc--CCCcchhhHHHHHHHhcCc---EEEEeccc-eEEEchhh
Confidence 34788888888885 45577777 78888888776642 1122335778888777787 56666554 66666443
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.24 E-value=7.9 Score=42.13 Aligned_cols=171 Identities=11% Similarity=0.063 Sum_probs=93.3
Q ss_pred ccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEE-Eee-ccccc----Cee-EEEEcCCCCEEEEEeC
Q 001248 850 KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK-SKL-KGHSK----RIT-GLAFSHALNVLVSSGA 922 (1114)
Q Consensus 850 ~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~-~~l-~~h~~----~V~-~l~~s~d~~~l~s~s~ 922 (1114)
+.++.+......+..+-..| ||+.|..-+. .++.++++.+...- +++ ....+ .|+ ++..-..|.-|..++.
T Consensus 211 e~i~~L~~~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~ 288 (733)
T COG4590 211 EIIRLLSVPFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHE 288 (733)
T ss_pred hhhhhcCCCccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcC
Confidence 33444555667788899999 8988876654 68889988764321 122 11111 222 2222335677888999
Q ss_pred CCcEEEE-eCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCCCceeeeeecCCCCcCeeE
Q 001248 923 DSQLCVW-SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITH 1000 (1114)
Q Consensus 923 D~~v~iw-d~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~ 1000 (1114)
||.|.-| |+..........++.+ .-....+..+.-..+-+-++. ...|++.++.....+.+-.-. --..+..
T Consensus 289 dG~vsQWFdvr~~~~p~l~h~R~f---~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~---~~~~~~~ 362 (733)
T COG4590 289 DGLVSQWFDVRRDGQPHLNHIRNF---KLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER---AYQAPQL 362 (733)
T ss_pred CCceeeeeeeecCCCCcceeeecc---ccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh---hhcCcce
Confidence 9998877 4433222111111111 111111221111112223333 456677766654443322111 1235677
Q ss_pred EEECCCCCEEEEEEcCCeEEEEEcCCCee
Q 001248 1001 ATFSCDSQLVYACFLDATVCVFSAANLKL 1029 (1114)
Q Consensus 1001 l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~ 1029 (1114)
+++||++.+|++- ..|.|+++.+++...
T Consensus 363 ~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 363 VAMSPNQAYLLSE-DQGKIRLAQLENRNP 390 (733)
T ss_pred eeeCcccchheee-cCCceEEEEecCCCC
Confidence 8999999999876 467899998876544
|
|
| >KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.19 E-value=1.2e+02 Score=38.36 Aligned_cols=189 Identities=12% Similarity=0.083 Sum_probs=90.6
Q ss_pred CCCcEEEEEcccceEEEeeccc-ccCeeEEEEc---C------CCCEEEEEeC---------CCcEEEEeCCC-----Cc
Q 001248 880 DDSSIQIYNVRVDEVKSKLKGH-SKRITGLAFS---H------ALNVLVSSGA---------DSQLCVWSSDG-----WE 935 (1114)
Q Consensus 880 ~dg~v~iwd~~~~~~~~~l~~h-~~~V~~l~~s---~------d~~~l~s~s~---------D~~v~iwd~~~-----~~ 935 (1114)
..+.|.+.+..+++.+..+.-. ..-|+++... . -..+|+.|.. .|.+.|+|+-. ++
T Consensus 1002 ~~f~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgk 1081 (1366)
T KOG1896|consen 1002 EQFSIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGK 1081 (1366)
T ss_pred ccceeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCC
Confidence 3455666666666555433211 1123333321 1 1246776643 37899999743 21
Q ss_pred cccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEc-CCCceeeeeecCCCCcCeeEEEECCCCCEEEEEE
Q 001248 936 KQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFET-TKLECVKQWVPRESSAPITHATFSCDSQLVYACF 1014 (1114)
Q Consensus 936 ~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~-~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s 1014 (1114)
......++... .....+.|..++ .-+| +|+++...+|.+|++ +....+..-.. .-++.-....-=+.+|+.|.
T Consensus 1082 P~t~~KlKel~-~eE~KGtVsavc-eV~G-~l~~~~GqKI~v~~l~r~~~ligVaFi---D~~~yv~s~~~vknlIl~gD 1155 (1366)
T KOG1896|consen 1082 PFTKNKLKELY-IEEQKGTVSAVC-EVRG-HLLSSQGQKIIVRKLDRDSELIGVAFI---DLPLYVHSMKVVKNLILAGD 1155 (1366)
T ss_pred Ccccceeeeee-hhhcccceEEEE-Eecc-EEEEccCcEEEEEEeccCCcceeeEEe---ccceeEEehhhhhhheehhh
Confidence 11111111111 111123343332 3444 456666778999998 44444433222 11222222223345566665
Q ss_pred cCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCe-EEEEeCCCcEEEEeccCCC
Q 001248 1015 LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNE-FALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1015 ~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~-l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
--..|.+..+...-..-.+- ..+ .....++++.|.-+.+++ +++++.|++|+++-..-..
T Consensus 1156 V~ksisfl~fqeep~rlsL~-----srd--~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~Pe~ 1216 (1366)
T KOG1896|consen 1156 VMKSISFLGFQEEPYRLSLL-----SRD--FEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYAPEN 1216 (1366)
T ss_pred hhhceEEEEEccCceEEEEe-----ecC--CchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeCCCC
Confidence 55556655443221111111 111 122344477887754443 7788999999998876544
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=85.05 E-value=22 Score=32.31 Aligned_cols=113 Identities=12% Similarity=0.114 Sum_probs=67.6
Q ss_pred EccCCcEEEE-EeCCeEEEEEcCCCc--------eeeeeecCCCCcCeeEEEECC-----CCCEEEEEEcCCeEEEEEcC
Q 001248 960 FHQDQIHFLV-VHETQLAIFETTKLE--------CVKQWVPRESSAPITHATFSC-----DSQLVYACFLDATVCVFSAA 1025 (1114)
Q Consensus 960 fspdg~~l~~-~~d~~i~iwd~~~~~--------~~~~~~~~~h~~~v~~l~~s~-----dg~~l~s~s~Dg~I~vwd~~ 1025 (1114)
|....-.|++ +.-++|.|++..... .++.+.. ...|++|+-.+ +...|+.|+ ...+..||+.
T Consensus 6 fDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi---n~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 6 FDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI---NQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred eCCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC---CCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 3333445555 567788888765332 3333432 56777776433 334566665 6789999999
Q ss_pred CCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCCCccc
Q 001248 1026 NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWG 1085 (1114)
Q Consensus 1026 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~~~~~ 1085 (1114)
...-+..-+ +++| ++.+.+.-..+...-|+..+.++.|.=+|....|.-|.
T Consensus 82 ~N~d~Fyke----~~DG-----vn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 82 NNSDLFYKE----VPDG-----VNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred cCchhhhhh----Cccc-----eeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence 887764333 6666 66554432222233455555688888888776665554
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=84.17 E-value=4.2 Score=41.39 Aligned_cols=76 Identities=7% Similarity=0.061 Sum_probs=52.4
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCcccccc--ccccCCCC----CCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCC
Q 001248 910 FSHALNVLVSSGADSQLCVWSSDGWEKQKNR--FLQIPTGR----TPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL 983 (1114)
Q Consensus 910 ~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~--~~~~~~~~----~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~ 983 (1114)
+..++.+|++.+.+|.+++||+.+.+..... ........ ......|..+.++.+|.-+++-.+|..+.|+..-+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 4456889999999999999999987653322 11111110 01224688899999999988877888899987644
Q ss_pred ce
Q 001248 984 EC 985 (1114)
Q Consensus 984 ~~ 985 (1114)
.-
T Consensus 98 ~W 99 (219)
T PF07569_consen 98 CW 99 (219)
T ss_pred ee
Confidence 43
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=84.03 E-value=5.5 Score=40.54 Aligned_cols=74 Identities=14% Similarity=0.115 Sum_probs=51.8
Q ss_pred EEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCccccccccc-------CCCCCeeEEEEcCCCCeEEE
Q 001248 365 DFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVK-------DPGVSVNRVIWSPDGSLFGV 437 (1114)
Q Consensus 365 ~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-------~h~~~V~~l~~spdg~~las 437 (1114)
.+..++.+ |++-+.+|.+++||+.+++..... ..+. .++. .....|..+.++.+|.-|++
T Consensus 17 ~l~~~~~~-Ll~iT~~G~l~vWnl~~~k~~~~~-~Si~-----------pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ 83 (219)
T PF07569_consen 17 FLECNGSY-LLAITSSGLLYVWNLKKGKAVLPP-VSIA-----------PLLNSSPVSDKSSSPNITSCSLTSNGVPIVT 83 (219)
T ss_pred EEEeCCCE-EEEEeCCCeEEEEECCCCeeccCC-ccHH-----------HHhcccccccCCCCCcEEEEEEcCCCCEEEE
Confidence 35567887 666788999999999998876531 1111 1122 45668999999988888777
Q ss_pred EeCCCeEEEEEccCC
Q 001248 438 AYSRHIVQIYSYHGG 452 (1114)
Q Consensus 438 ~~~dg~i~iwd~~~~ 452 (1114)
-+ +|....|+.+-+
T Consensus 84 ls-ng~~y~y~~~L~ 97 (219)
T PF07569_consen 84 LS-NGDSYSYSPDLG 97 (219)
T ss_pred Ee-CCCEEEeccccc
Confidence 65 477888887643
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.96 E-value=85 Score=38.82 Aligned_cols=249 Identities=11% Similarity=0.051 Sum_probs=115.2
Q ss_pred EEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEE
Q 001248 757 LIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA 836 (1114)
Q Consensus 757 l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~ 836 (1114)
.++..-|+.+.+|+.+|.+.+|.+........... .. ...... ..-+..+|..+...+.-.++.+-
T Consensus 20 ~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~-~~---------~~~~~~----~~~~kk~i~~l~~~~~~~~ll~l 85 (877)
T KOG2063|consen 20 LCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVEL-VT---------ETVKFE----KEFSKKPINKLLVCASLELLLIL 85 (877)
T ss_pred hHHHHhCCEEEEEcCCCcEEEEeccccccccchhh-hc---------chhHHh----hhhccchhHHHhhcchhcchhee
Confidence 34455678899999999999998865322111000 00 000000 01135667777777777788888
Q ss_pred eCCeEEEEEcCCCccccccCCCCCCeEEEEEe--cCC-C--cEEEEEe-CCC-cEEEEEcccceEEEeecccccCeeEEE
Q 001248 837 SGGKISLFNMMTFKTMATFMPPPPAATFLAFH--PQD-N--NIIAIGM-DDS-SIQIYNVRVDEVKSKLKGHSKRITGLA 909 (1114)
Q Consensus 837 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s--p~d-~--~~la~g~-~dg-~v~iwd~~~~~~~~~l~~h~~~V~~l~ 909 (1114)
+|+.|.++++.+.+...... +-..+...+.. +.. + .+.+..+ ... ....|+-..+..+..--+-.....+++
T Consensus 86 ~dsqi~~~~l~~~~~~~~~~-~~Kg~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 164 (877)
T KOG2063|consen 86 SDSQIAVHKLPELEPVPSGT-RLKGASLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVKELGFPDVPKARA 164 (877)
T ss_pred cCCcceeeecCccccccccc-ccccceeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEEecccccchhhhc
Confidence 89999999987766521111 11111111110 001 1 1222222 111 122233222222221111222223333
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCCceeee-
Q 001248 910 FSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQ- 988 (1114)
Q Consensus 910 ~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~~~- 988 (1114)
| .+..+.++-.+....+|.-.++......+...... ..-..+.--.++..++.+.|+...+-|.......+.
T Consensus 165 ~--~~~~~c~~~~~~~~ii~~~~~~~~~~~~~s~~~~~-----s~~P~I~~l~~~~~ll~~kd~~gv~vd~~G~~~~~~~ 237 (877)
T KOG2063|consen 165 W--CGHIVCLGLKKSYYIINNTSKGVGPNLFPSSMDNE-----SRKPLIKSLSDQSELLLGKDNIGVVVDLNGIIAQRGT 237 (877)
T ss_pred c--cceeEEEeecceeEEEecCCCccccceeeeccccc-----cCCCeEEEecCCceEEEccCceEEEEecCCcccCCCc
Confidence 3 34445555444445555544432211111111100 111334445566566667676666666442221111
Q ss_pred eecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEe
Q 001248 989 WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1033 (1114)
Q Consensus 989 ~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~ 1033 (1114)
+. -+....++.+ +.-|+++-+ ++.|.||+..++.++..+
T Consensus 238 l~---ws~~P~~v~~--~~PYlIa~~-~~~veI~s~~~~qlvQSI 276 (877)
T KOG2063|consen 238 LV---WSEVPLSVVV--ESPYLIALL-DRSVEIRSKLDGQLVQSI 276 (877)
T ss_pred eE---ecccchhhcc--cCceEEEEc-cccEEEEeccCHHHhhcc
Confidence 10 0112222222 455666554 669999999999888776
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=83.88 E-value=72 Score=34.96 Aligned_cols=66 Identities=8% Similarity=-0.065 Sum_probs=34.7
Q ss_pred CCcEEEEEe------CCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCC----eEEEEEcCCCee
Q 001248 963 DQIHFLVVH------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA----TVCVFSAANLKL 1029 (1114)
Q Consensus 963 dg~~l~~~~------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg----~I~vwd~~~~~~ 1029 (1114)
+++..+.++ ...+..||+.+.+-...-.... .......+...++++.+.|+.++ .+.+||..+.+-
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 555555542 1358888988765432211111 11222233344677777777654 356788887654
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=83.48 E-value=58 Score=33.55 Aligned_cols=240 Identities=14% Similarity=0.158 Sum_probs=139.3
Q ss_pred cCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeE
Q 001248 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 435 (1114)
Q Consensus 356 ~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 435 (1114)
........|+-.|||. +-++++..|.|---|..+|+.... -.+....-..|..-|||..-
T Consensus 59 p~G~ap~dvapapdG~-VWft~qg~gaiGhLdP~tGev~~y-------------------pLg~Ga~Phgiv~gpdg~~W 118 (353)
T COG4257 59 PNGSAPFDVAPAPDGA-VWFTAQGTGAIGHLDPATGEVETY-------------------PLGSGASPHGIVVGPDGSAW 118 (353)
T ss_pred CCCCCccccccCCCCc-eEEecCccccceecCCCCCceEEE-------------------ecCCCCCCceEEECCCCCee
Confidence 3556678899999998 578888888888888888887642 23344456678888988876
Q ss_pred EEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecC---------CCCEEEEeCCCCcceeEee
Q 001248 436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD---------DKTIKVWDATNGAKQYIFE 506 (1114)
Q Consensus 436 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~---------d~~i~iwd~~~~~~~~~~~ 506 (1114)
++-+.. -|.-.|-++.+..+-......-........|.++|. +-+++.. .+.|++|+.-.|.
T Consensus 119 itd~~~-aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~--lWFt~q~G~yGrLdPa~~~i~vfpaPqG~------ 189 (353)
T COG4257 119 ITDTGL-AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGN--LWFTGQIGAYGRLDPARNVISVFPAPQGG------ 189 (353)
T ss_pred EecCcc-eeEEecCcccceEEeecccccCCCcccceeeCCCcc--EEEeeccccceecCcccCceeeeccCCCC------
Confidence 654433 466666666654433223333445678899999998 6666642 2345566544332
Q ss_pred ccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCC
Q 001248 507 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 586 (1114)
Q Consensus 507 ~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~ 586 (1114)
.-..||. .+||..-++.-.+..|-..|..+..... +.. |+.. .....-+-.+|.+
T Consensus 190 ----gpyGi~a--tpdGsvwyaslagnaiaridp~~~~aev-~p~-----------P~~~-------~~gsRriwsdpig 244 (353)
T COG4257 190 ----GPYGICA--TPDGSVWYASLAGNAIARIDPFAGHAEV-VPQ-----------PNAL-------KAGSRRIWSDPIG 244 (353)
T ss_pred ----CCcceEE--CCCCcEEEEeccccceEEcccccCCcce-ecC-----------CCcc-------cccccccccCccC
Confidence 2334453 4566666666566666655554432111 111 1110 0011112233444
Q ss_pred CEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 587 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 587 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
..-++....+.++.+|..... -..+...+....-.++.....++...+-...|.|.-+|.++.
T Consensus 245 ~~wittwg~g~l~rfdPs~~s-W~eypLPgs~arpys~rVD~~grVW~sea~agai~rfdpeta 307 (353)
T COG4257 245 RAWITTWGTGSLHRFDPSVTS-WIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPETA 307 (353)
T ss_pred cEEEeccCCceeeEeCccccc-ceeeeCCCCCCCcceeeeccCCcEEeeccccCceeecCcccc
Confidence 456666667788888876544 334444443444566777766766665555566666665554
|
|
| >KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown] | Back alignment and domain information |
|---|
Probab=83.46 E-value=1.4e+02 Score=37.93 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=17.7
Q ss_pred cccceEEEEEccCcceeeecccCc
Q 001248 750 RATKISRLIFTNSGNAILALASNA 773 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~~dg 773 (1114)
+-..+.+++++|||..+++-..+-
T Consensus 660 ~lnsp~alaVsPdg~v~IAD~gN~ 683 (1899)
T KOG4659|consen 660 KLNSPYALAVSPDGDVIIADSGNS 683 (1899)
T ss_pred ccCCcceEEECCCCcEEEecCCch
Confidence 556778999999998776655443
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.52 E-value=14 Score=46.35 Aligned_cols=171 Identities=13% Similarity=0.201 Sum_probs=101.1
Q ss_pred CCCCCcceeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCe
Q 001248 344 PEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSV 423 (1114)
Q Consensus 344 ~~~~~~~~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V 423 (1114)
...+|.++.....|...-+.+-+-|.=.+.-+ +.|+.+.+|+++++..... +.+-...|
T Consensus 64 v~~IP~el~eq~~~~~~~~~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~~-------------------~d~~shtI 122 (1311)
T KOG1900|consen 64 VVNIPDELLEQFSNIECKTDMGIFPEIGRAWI--TIDNNLFLWNYESDNELAE-------------------YDGLSHTI 122 (1311)
T ss_pred cccCCHHHHHHhcCcceeeeeccchhhcceEE--EeCCeEEEEEcCCCCcccc-------------------ccchhhhh
Confidence 34567777777776666566666665443233 4689999999998655442 33444455
Q ss_pred eEEEE--------cCCCCeEEEEeCCCeEEEEEccCCceee------eeEeeccccCCeeEEEecCCCCeeEEEEecCCC
Q 001248 424 NRVIW--------SPDGSLFGVAYSRHIVQIYSYHGGDEVR------QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK 489 (1114)
Q Consensus 424 ~~l~~--------spdg~~las~~~dg~i~iwd~~~~~~~~------~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~ 489 (1114)
..|.. -|.=++|...+.--.|.|+-+.-.+... ...++.-....|+|+....+|+ ++++ |.||
T Consensus 123 l~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~~-G~dg 199 (1311)
T KOG1900|consen 123 LKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFFA-GRDG 199 (1311)
T ss_pred eeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc--EEEe-ecCC
Confidence 55542 3344455544444556666554222111 1112222345789999888888 5555 4555
Q ss_pred CEEEEeCC----CC---c-c----------------eeEee-ccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCC
Q 001248 490 TIKVWDAT----NG---A-K----------------QYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 542 (1114)
Q Consensus 490 ~i~iwd~~----~~---~-~----------------~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 542 (1114)
.+|.+. +| + + +-.+. .+..+|..+.+..+. ..+++-+..|+|.+||+..
T Consensus 200 --~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR--~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 200 --NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR--NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred --CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc--ceeeeeccCceEEEEEccC
Confidence 445432 11 1 1 01122 567789988875444 6899999999999999976
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.30 E-value=24 Score=39.50 Aligned_cols=92 Identities=16% Similarity=0.153 Sum_probs=62.0
Q ss_pred CcCeeEEEECCCCCEEEEEEcCCeEEEEE---------cCCCe--eeEEeCC---CcccCCCCCCCCccceEEEecCCC-
Q 001248 995 SAPITHATFSCDSQLVYACFLDATVCVFS---------AANLK--LRCRINP---SAYLPAGVSSSNVHPLVIAAHPQE- 1059 (1114)
Q Consensus 995 ~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd---------~~~~~--~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~d- 1059 (1114)
.-.|..+..++.|..++.++.+|.+..+= +.+|+ ..|+..+ ..|.. +..+...-++|+|+.
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~fts----s~~ltl~Qa~WHP~S~ 178 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTS----STSLTLKQAAWHPSSI 178 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeecc----CCceeeeeccccCCcc
Confidence 34578888999999999998898655542 23443 2333221 11222 122555678999953
Q ss_pred -CCeEEEEeCCCcEEEEeccCCCCcccCCCCC
Q 001248 1060 -PNEFALGLSDGGVHVFEPLESEGKWGVPPPV 1090 (1114)
Q Consensus 1060 -~~~l~s~~~Dg~v~vW~i~~~~~~~~~~~~~ 1090 (1114)
...|+.-+.|+.+++++.+...+.|..|.|.
T Consensus 179 ~D~hL~iL~sdnviRiy~lS~~telylqpgep 210 (741)
T KOG4460|consen 179 LDPHLVLLTSDNVIRIYSLSEPTELYLQPGEP 210 (741)
T ss_pred CCceEEEEecCcEEEEEecCCcchhhccCCCc
Confidence 4567888889999999999988887776553
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=81.51 E-value=92 Score=34.49 Aligned_cols=198 Identities=17% Similarity=0.284 Sum_probs=102.2
Q ss_pred CCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEec----CCCCeeEEEEec-CC---CCEEEEeCC--CC
Q 001248 430 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS----HPNKQLCVITCG-DD---KTIKVWDAT--NG 499 (1114)
Q Consensus 430 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s----~d~~~~~l~s~~-~d---~~i~iwd~~--~~ 499 (1114)
|...+++....++-+.+||++... +.. +. .+.++.+..- -+|+..-|+.++ .+ .+|++|.+. ++
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk~-lq~---~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g 139 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGKE-LQS---LP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG 139 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS-E-EEE---E---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT
T ss_pred cccceEEEEeCCCCEEEEcCCCcE-EEe---ec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC
Confidence 456677777788889999998653 332 22 2333433321 134432233333 22 469999775 33
Q ss_pred cceeEeec-------cccCEEEEeeccCC-Cc-eEEEEEecCCeEEEEEcCCCC-CeeeecCCCCeeEEEEEecCCCeEE
Q 001248 500 AKQYIFEG-------HEAPVYSVCPHHKE-NI-QFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTY 569 (1114)
Q Consensus 500 ~~~~~~~~-------h~~~v~~~~~~~~~-~~-~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~~~ 569 (1114)
. +..+.. -...+..+|+..++ +| -+++....+|.+..|.+.... ..... ..|..+..
T Consensus 140 ~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~----~lVR~f~~-------- 206 (381)
T PF02333_consen 140 E-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSA----TLVREFKV-------- 206 (381)
T ss_dssp E-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEE----EEEEEEE---------
T ss_pred c-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEee----EEEEEecC--------
Confidence 3 333321 12346778875443 33 467777889999988775321 11100 01222211
Q ss_pred eeecccceeEEEecCCCCEEEEEeCCCeEEEEECCC-----cceEEEeccCCCCCCcCeEEEcC--CC--CEEEEEeCCC
Q 001248 570 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-----VQLLTSIDADGGLPASPRIRFNK--DG--CLLAVSTNDN 640 (1114)
Q Consensus 570 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~~~~s~--d~--~~l~~~~~dg 640 (1114)
...+-.+..+....+|+.+-++.-|+-|+.+- ++.+.......-...+-.+++-. ++ .+|++.-.++
T Consensus 207 ----~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~ 282 (381)
T PF02333_consen 207 ----GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDN 282 (381)
T ss_dssp ----SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGT
T ss_pred ----CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCC
Confidence 11334455556666788888888888888752 22232333222234566666643 33 3444555577
Q ss_pred cEEEEEccCC
Q 001248 641 GIKILATSDG 650 (1114)
Q Consensus 641 ~i~iwd~~~~ 650 (1114)
+..+|+....
T Consensus 283 sf~Vy~r~~~ 292 (381)
T PF02333_consen 283 SFAVYDREGP 292 (381)
T ss_dssp EEEEEESSTT
T ss_pred eEEEEecCCC
Confidence 8999997754
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[] | Back alignment and domain information |
|---|
Probab=81.49 E-value=87 Score=38.92 Aligned_cols=78 Identities=18% Similarity=0.143 Sum_probs=53.0
Q ss_pred CcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEe----CCCc----ccCCCCCCC-CccceEEEecCCCCCeEEE
Q 001248 995 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI----NPSA----YLPAGVSSS-NVHPLVIAAHPQEPNEFAL 1065 (1114)
Q Consensus 995 ~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~----~~~~----~~~~~~~~~-~v~~~~~~~~~~d~~~l~s 1065 (1114)
.+.|.+++...-+.+++.+..||+|.++|-.+.+.+... .... ....|-+-. .-.++.++|||. +..++.
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt-~c~~v~ 337 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPT-MCSLVQ 337 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcc-cceEEE
Confidence 567888988888889999999999999999888766544 1111 111111100 012346889994 677888
Q ss_pred EeCCCcEE
Q 001248 1066 GLSDGGVH 1073 (1114)
Q Consensus 1066 ~~~Dg~v~ 1073 (1114)
-..||.+.
T Consensus 338 ~~~~~~~~ 345 (753)
T PF11635_consen 338 IDEDGKTK 345 (753)
T ss_pred EecCCCce
Confidence 88888865
|
It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM. |
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.25 E-value=1e+02 Score=34.85 Aligned_cols=73 Identities=11% Similarity=0.028 Sum_probs=49.3
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEE---------cccceEEEee-----------cccccCeeEEEEcCCC---CEE
Q 001248 861 AATFLAFHPQDNNIIAIGMDDSSIQIYN---------VRVDEVKSKL-----------KGHSKRITGLAFSHAL---NVL 917 (1114)
Q Consensus 861 ~i~~l~~sp~d~~~la~g~~dg~v~iwd---------~~~~~~~~~l-----------~~h~~~V~~l~~s~d~---~~l 917 (1114)
.|..+..++ .|..+|..+.+|.+.++= ++.|+..... ....-.+..++|+|+. ..|
T Consensus 105 eV~~vl~s~-~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 105 EVYQVLLSP-TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEecC-CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 466778888 888888888898766543 1233222111 1112245678899975 678
Q ss_pred EEEeCCCcEEEEeCCCC
Q 001248 918 VSSGADSQLCVWSSDGW 934 (1114)
Q Consensus 918 ~s~s~D~~v~iwd~~~~ 934 (1114)
..-+.|.++++||+...
T Consensus 184 ~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEP 200 (741)
T ss_pred EEEecCcEEEEEecCCc
Confidence 88889999999999873
|
|
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=81.05 E-value=43 Score=35.52 Aligned_cols=92 Identities=10% Similarity=0.165 Sum_probs=57.4
Q ss_pred CcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEe------CCCeEEEEEccCCce
Q 001248 381 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY------SRHIVQIYSYHGGDE 454 (1114)
Q Consensus 381 g~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~------~dg~i~iwd~~~~~~ 454 (1114)
..|++||+.+.+-.. .-.+-.+.|++|.|..+.++++.|. ....+..||.++..-
T Consensus 16 ~~lC~yd~~~~qW~~-------------------~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w 76 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSS-------------------PGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW 76 (281)
T ss_pred CEEEEEECCCCEeec-------------------CCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee
Confidence 358999988765432 2334567899999997777777774 345688999887642
Q ss_pred eeeeEeecc-----ccCCeeEEEecCCCCeeEEEEec-CCC--CEEEEe
Q 001248 455 VRQHLEIDA-----HVGGVNDIAFSHPNKQLCVITCG-DDK--TIKVWD 495 (1114)
Q Consensus 455 ~~~~~~l~~-----h~~~V~~v~~s~d~~~~~l~s~~-~d~--~i~iwd 495 (1114)
. .+.+ -.++|..+.+..++..-+.+.|. .++ .|..||
T Consensus 77 ~----~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~d 121 (281)
T PF12768_consen 77 S----SLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYD 121 (281)
T ss_pred e----ecCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEc
Confidence 2 2333 24688888885433321444443 333 366676
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.02 E-value=75 Score=33.14 Aligned_cols=200 Identities=15% Similarity=0.089 Sum_probs=101.3
Q ss_pred cCCC-CCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEe
Q 001248 417 KDPG-VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495 (1114)
Q Consensus 417 ~~h~-~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd 495 (1114)
-+|- ..|..+....+-.++..|-.--..-+|+.......-....+ .-.+-+..+.++.+ +...+..+.-++|.|
T Consensus 38 vghfg~~vsavdv~~~ya~v~qG~~l~i~ditn~~~~t~~~l~~~i-~~~~l~~Dv~vse~----yvyvad~ssGL~IvD 112 (370)
T COG5276 38 VGHFGKGVSAVDVRGAYAYVGQGFILAILDITNVSLQTHDVLLSVI-NARDLFADVRVSEE----YVYVADWSSGLRIVD 112 (370)
T ss_pred eeeccCCcccccccccccccccCceEeeccccCcccccCcceEEEE-ehhhhhheeEeccc----EEEEEcCCCceEEEe
Confidence 3444 46777766654444443321111234444321111111111 22345677888754 456666777899999
Q ss_pred CCCCcceeEeec--cccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCee---eecCCCCeeEEEEEecCCCeEEe
Q 001248 496 ATNGAKQYIFEG--HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV---DYEAPGRWCTTMAYSADGTRTYQ 570 (1114)
Q Consensus 496 ~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~---~~~~~~~~v~~~~~s~~g~~~~~ 570 (1114)
+.+...-..+.. -.+--.++. -+ |++.+.+..|.-+.+.|+.+..... .+......-..+++
T Consensus 113 IS~P~sP~~~~~lnt~gyaygv~--vs--Gn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~I--------- 179 (370)
T COG5276 113 ISTPDSPTLIGFLNTDGYAYGVY--VS--GNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAI--------- 179 (370)
T ss_pred ccCCCCcceeccccCCceEEEEE--ec--CCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEE---------
Confidence 987654332211 112223333 22 3678888877778888887654433 11112211122222
Q ss_pred eecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 571 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
.|++-..+..|+-+.+-|+.....-..+........+.++..+++-.+++... .-+.+-|..+.
T Consensus 180 --------------SGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~--egvlivd~s~~ 243 (370)
T COG5276 180 --------------SGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD--EGVLIVDVSGP 243 (370)
T ss_pred --------------ecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc--cceEEEecCCC
Confidence 23455666778888999887654322222111112467777777666655543 34556665544
|
|
| >PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins | Back alignment and domain information |
|---|
Probab=80.91 E-value=6.7 Score=34.38 Aligned_cols=77 Identities=22% Similarity=0.298 Sum_probs=50.6
Q ss_pred cchHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCcc-H-HHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHHHHHH
Q 001248 3 SLSRELVFLILQFLDEEKFKETVHKLEQESGFFFN-M-KYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQK 80 (1114)
Q Consensus 3 ~~~~~v~~li~q~L~~~g~~~s~~~l~~Esg~~~~-~-~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (1114)
.+..|=...|.+|++..| +.+.+++|.||++. + ..|-+ .++.|....... ..-...+..
T Consensus 33 ~L~~E~~~Fi~~Fi~~rG---nlKe~e~~lgiSYPTvR~rLd~---------ii~~lg~~~~~~-------~~~~~~~~~ 93 (113)
T PF09862_consen 33 RLSPEQLEFIKLFIKNRG---NLKEMEKELGISYPTVRNRLDK---------IIEKLGYEEDEE-------EEEEDERKE 93 (113)
T ss_pred cCCHHHHHHHHHHHHhcC---CHHHHHHHHCCCcHHHHHHHHH---------HHHHhCCCCCcc-------cccchhHHH
Confidence 455667788899999999 88999999999996 2 22222 222222211111 112335788
Q ss_pred HHHHHhcCC--HHHHHHHHH
Q 001248 81 YLEALDKHD--RAKAVEILV 98 (1114)
Q Consensus 81 ~lell~~~~--~~~A~~~l~ 98 (1114)
.|+.|+.|+ .++|+..|+
T Consensus 94 IL~~L~~GeIs~eeA~~~Lk 113 (113)
T PF09862_consen 94 ILDKLEKGEISVEEALEILK 113 (113)
T ss_pred HHHHHHcCCCCHHHHHHHhC
Confidence 999999998 577887764
|
|
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=80.46 E-value=92 Score=37.07 Aligned_cols=128 Identities=12% Similarity=0.170 Sum_probs=73.4
Q ss_pred ceEEEEccCCcEEEE-EeCC-----eEEEEEcCCCceeeeeec-CCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCC
Q 001248 955 DTRVQFHQDQIHFLV-VHET-----QLAIFETTKLECVKQWVP-RESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1027 (1114)
Q Consensus 955 i~~v~fspdg~~l~~-~~d~-----~i~iwd~~~~~~~~~~~~-~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~ 1027 (1114)
-..+.|-|.|..+++ +.|| .|..+.... -.-..+.. .+-...+..++|.-....++.+ ....|.+|-..+.
T Consensus 249 e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNG-LrHGef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNy 326 (1243)
T COG5290 249 EHQLSWKPQGSKYATIGTDGCSTSESVIFFERNG-LRHGEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNY 326 (1243)
T ss_pred hhccccccCCceeeeeccCCCCCcceEEEEccCC-cccCCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccce
Confidence 356899999999999 5554 355555432 22222211 1224456777787666666644 4678999987665
Q ss_pred eeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCCCcccCCCCCCCCCC
Q 001248 1028 KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGST 1095 (1114)
Q Consensus 1028 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~~~~~~~~~~~~~~~ 1095 (1114)
.-- ++...+.|. +. -+.|+|...+.|...+ .+.|..-........-...-|+++|.+
T Consensus 327 hWY--LK~e~~ip~------~s--~vkwhpe~~nTl~f~d-~~~I~~V~f~~k~~~~~s~~p~d~g~~ 383 (1243)
T COG5290 327 HWY--LKVERQIPG------IS--YVKWHPEEKNTLLFRD-GERILRVFFSEKKTHHGSEYPFDNGTS 383 (1243)
T ss_pred EEE--EEEeecCCC------cc--eeeeccccCcEEEEec-CCeEEEEEeehhhhcCCcccCccCCce
Confidence 432 222233442 33 5889997666666543 344444444444433444567777765
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1114 | ||||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 3e-10 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 1e-04 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 3e-10 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 1e-04 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 6e-10 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 8e-05 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 6e-10 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 1e-04 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 8e-10 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 1e-04 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 9e-10 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 1e-04 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 9e-10 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 1e-04 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 9e-10 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 1e-04 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 9e-10 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 2e-04 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 9e-10 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 1e-04 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 9e-10 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 1e-04 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 1e-09 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 1e-04 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 1e-09 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 2e-04 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 2e-09 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 4e-04 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 2e-09 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 2e-04 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 2e-09 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 2e-04 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 2e-09 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 2e-04 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 1e-07 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 5e-06 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 5e-06 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 7e-06 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 9e-06 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 1e-05 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 1e-05 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 7e-05 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 8e-05 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 8e-05 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 1e-04 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 1e-04 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 1e-04 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 2e-04 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 2e-04 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 2e-04 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 3e-04 | ||
| 2pm9_A | 416 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 4e-04 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 5e-04 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 5e-04 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 5e-04 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 6e-04 | ||
| 3jro_A | 753 | Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice | 6e-04 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 7e-04 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 8e-04 |
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1114 | |||
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.98 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.98 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.97 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.97 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.97 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.97 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.97 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.96 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.96 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.96 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.96 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.96 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.96 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.96 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.96 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.96 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.96 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.96 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.96 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.95 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.95 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.95 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.95 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.94 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.92 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.92 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.91 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.91 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.91 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.89 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.89 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.89 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.88 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.88 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.87 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.87 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.86 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.86 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.86 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.86 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.85 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.84 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.84 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.83 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.83 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.83 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.82 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.82 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.81 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.81 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.81 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.81 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.8 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.8 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.79 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.79 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.78 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.75 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.75 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.73 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.73 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.7 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.68 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.68 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.68 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.66 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.66 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.66 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.65 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.65 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.64 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.62 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.62 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.61 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.58 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.57 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.57 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.57 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.55 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.55 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.54 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.54 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.53 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.53 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.52 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.52 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.52 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.52 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.52 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.5 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.5 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.49 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.48 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.47 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.47 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.46 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.44 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.44 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.42 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.37 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.37 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.35 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.33 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.33 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.31 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.29 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.28 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.28 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.28 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.26 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.26 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.25 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.25 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.24 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 99.21 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.2 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.19 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.18 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.17 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.17 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.16 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.16 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.13 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.13 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.12 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.12 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.12 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.1 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.09 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.09 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.06 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.06 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.02 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.01 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 99.01 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.01 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.91 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.89 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.87 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.82 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.78 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 98.78 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.73 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.72 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.72 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.72 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.71 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.69 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.6 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.59 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.55 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.54 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 98.54 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.53 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.53 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.52 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.5 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.5 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.49 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.45 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.4 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.39 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.39 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.37 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.36 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.35 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.3 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.26 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.24 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.23 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.2 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.19 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.19 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.16 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.15 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.13 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.08 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.08 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.06 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.05 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.04 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.03 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.03 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 97.95 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.88 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.87 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.87 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.81 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.8 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.75 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.75 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.72 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.72 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.64 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.6 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.47 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.45 | |
| 2xtc_A | 90 | F-box-like/WD repeat-containing protein TBL1X; tra | 97.3 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.3 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.29 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.27 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.25 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.23 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.22 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.19 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.17 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.1 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.1 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.95 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 96.94 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 96.8 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.73 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 96.59 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.54 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.46 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 96.39 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.38 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.35 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.25 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.17 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 96.13 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 96.09 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.08 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 95.85 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.81 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 95.78 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 95.75 | |
| 1uuj_A | 88 | Platelet-activating factor acetylhydrolase IB ALP | 95.75 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 95.64 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 95.64 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 95.41 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 95.16 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 95.02 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 94.77 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 94.77 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 94.77 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 94.32 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 94.25 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 93.92 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 93.32 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 93.31 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 92.51 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 92.32 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 91.62 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 89.61 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 89.21 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 89.21 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 89.06 | |
| 3uc1_A | 327 | DNA gyrase subunit A; DNA binding protein, topoiso | 88.26 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 84.65 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 84.53 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 84.08 | |
| 3no0_A | 276 | DNA gyrase subunit A; DNA topology, topoisomerase, | 81.8 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 80.97 |
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-66 Score=629.93 Aligned_cols=565 Identities=23% Similarity=0.360 Sum_probs=468.0
Q ss_pred EeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCC
Q 001248 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1114)
++.+|++.|+|++|||||++ ||+|+.|++|+|||. +++.+. .+.+|.+.|++++|||||
T Consensus 11 ~L~GH~~~V~~~a~spdg~~-las~~~d~~v~iWd~-~~~~~~-------------------~l~gh~~~V~~l~fspdg 69 (577)
T 2ymu_A 11 RLEAHSSSVRGVAFSPDGQT-IASASDDKTVKLWNR-NGQLLQ-------------------TLTGHSSSVWGVAFSPDG 69 (577)
T ss_dssp EECCCSSCEEEEEECTTSSC-EEEEETTSEEEEECT-TSCEEE-------------------EEECCSSCEEEEEECTTS
T ss_pred EECCCCCcEEEEEECCCCCE-EEEEeCCCEEEEEEC-CCCEEE-------------------EEeCCCCCEEEEEECCCC
Confidence 45569999999999999996 999999999999995 566554 478999999999999999
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCE
Q 001248 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 512 (1114)
Q Consensus 433 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 512 (1114)
++||+++.|++|+|||.. ++.+. .+.+|...|.+++|+|+++ ++++++.|+.+++|+.. ........+|...|
T Consensus 70 ~~las~~~d~~i~vWd~~-~~~~~---~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~-~~~~~~~~~~~~~v 142 (577)
T 2ymu_A 70 QTIASASDDKTVKLWNRN-GQLLQ---TLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRN-GQLLQTLTGHSSSV 142 (577)
T ss_dssp SEEEEEETTSCEEEEETT-SCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETT-CCEEEEECCCSSCE
T ss_pred CEEEEEeCCCEEEEEECC-CCEEE---EEECCCCCEEEEEECCCCC--EEEEEcCCCceeecccc-cceeeeccCCCCce
Confidence 999999999999999964 45444 6889999999999999999 79999999999999965 45566778899999
Q ss_pred EEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEE
Q 001248 513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 592 (1114)
Q Consensus 513 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~ 592 (1114)
..+.+++ ++..+++++.++.+++|+... ........+...+..+ .++|++.+++++
T Consensus 143 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~---------------------~~~~~~~~l~~~ 198 (577)
T 2ymu_A 143 WGVAFSP--DGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGV---------------------AFSPDGQTIASA 198 (577)
T ss_dssp EEEEECT--TSSCEEEEETTSEEEEECTTS-CEEEEEECCSSCEEEE---------------------EECTTSSCEEEE
T ss_pred eeeeeec--CCccceecccccceeccccce-eeeeeccCCCcceeee---------------------eecCCCCEEEEE
Confidence 9998765 457899999999999998643 2233333444444444 455555579999
Q ss_pred eCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCC
Q 001248 593 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 672 (1114)
Q Consensus 593 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (1114)
+.|+.|++||. +++.+..+..+ ...|.+++|+|++++|++++.|+.|++|+.. + +.+..+.+|...+..
T Consensus 199 ~~d~~v~~w~~-~~~~~~~~~~~--~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~-~~~~~~~~~~~~v~~------ 267 (577)
T 2ymu_A 199 SDDKTVKLWNR-NGQLLQTLTGH--SSSVRGVAFSPDGQTIASASDDKTVKLWNRN-G-QLLQTLTGHSSSVNG------ 267 (577)
T ss_dssp ETTSEEEEECT-TSCEEEEEECC--SSCEEEEEECTTSSCEEEEETTSCEEEECTT-S-CEEEEECCCSSCEEE------
T ss_pred cCCCEEEEEeC-CCcEEEEEecC--CCCEEEEEECCCCCEEEEEeCCCEEEEEeCC-C-CEEEEEecCCCCEEE------
Confidence 99999999996 56777777766 4479999999999999999999999999964 3 455566665543321
Q ss_pred CCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCcccccc
Q 001248 673 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 752 (1114)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 752 (1114)
..+.+++..+++++.|+.+++|+.... ....+ .+|..
T Consensus 268 -----------------------------------v~~~~d~~~l~~~~~d~~i~~w~~~~~----~~~~~----~~h~~ 304 (577)
T 2ymu_A 268 -----------------------------------VAFRPDGQTIASASDDKTVKLWNRNGQ----LLQTL----TGHSS 304 (577)
T ss_dssp -----------------------------------EEECTTSSEEEEEETTSCEEEEETTSC----EEEEE----CCCSS
T ss_pred -----------------------------------EEEcCCCCEEEEEeCCCEEEEEeCCCc----EEEEE----ecCCC
Confidence 223457788999999999999996531 11111 34889
Q ss_pred ceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCE
Q 001248 753 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 832 (1114)
Q Consensus 753 ~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~ 832 (1114)
.|.+++|+|+++.+++++.|+.+++|++.... +.. +. +|...+.+++|+|++++
T Consensus 305 ~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~----------------------~~~--~~--~~~~~v~~~~~s~~g~~ 358 (577)
T 2ymu_A 305 SVWGVAFSPDGQTIASASDDKTVKLWNRNGQH----------------------LQT--LT--GHSSSVWGVAFSPDGQT 358 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTSCE----------------------EEE--EC--CCSSCEEEEEECTTSSE
T ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe----------------------eEE--Ee--CCCCCEEEEEECCCCCE
Confidence 99999999999999999999999999864211 111 12 37889999999999999
Q ss_pred EEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEc
Q 001248 833 VMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS 911 (1114)
Q Consensus 833 l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s 911 (1114)
|++++ |+.|++||. +++.+..+.+|...|++++|+| ++++|++++.|+.|++||. +++.+..+.+|...|++++|+
T Consensus 359 l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s 435 (577)
T 2ymu_A 359 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFS 435 (577)
T ss_dssp EEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEEC
T ss_pred EEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEEC
Confidence 99999 899999995 5678888999999999999999 9999999999999999995 577888999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCCCceeeeee
Q 001248 912 HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWV 990 (1114)
Q Consensus 912 ~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~ 990 (1114)
||+++|++++.|++|++||.... .+....+|. ..|.+++|+|||++|++ +.|+.|++||. +++++..+.
T Consensus 436 ~d~~~l~~~~~d~~v~~w~~~~~------~~~~~~~~~---~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~ 505 (577)
T 2ymu_A 436 PDDQTIASASDDKTVKLWNRNGQ------LLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT 505 (577)
T ss_dssp TTSSEEEEEETTSEEEEEETTSC------EEEEEECCS---SCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEE
T ss_pred CCCCEEEEEcCCCEEEEEECCCC------EEEEEcCCC---CCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEe
Confidence 99999999999999999997642 233344444 47899999999999999 58999999995 677777776
Q ss_pred cCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCC
Q 001248 991 PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG 1070 (1114)
Q Consensus 991 ~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg 1070 (1114)
+|...|++++|+|||++|++++.||.|++||. +++.+..+. +|... |. +++|+| |+++|+|++.||
T Consensus 506 --~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~-------~h~~~-v~--~~~fs~-dg~~l~s~~~D~ 571 (577)
T 2ymu_A 506 --GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-------GHSSS-VW--GVAFSP-DGQTIASASSDK 571 (577)
T ss_dssp --CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE-------CCSSC-EE--EEEECT-TSSCEEEEETTS
T ss_pred --CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc-------CCCCC-EE--EEEEcC-CCCEEEEEeCCC
Confidence 89999999999999999999999999999996 677777766 44333 55 899999 689999999999
Q ss_pred cEEEEe
Q 001248 1071 GVHVFE 1076 (1114)
Q Consensus 1071 ~v~vW~ 1076 (1114)
+|++||
T Consensus 572 ~i~~Wd 577 (577)
T 2ymu_A 572 TVKLWN 577 (577)
T ss_dssp CEEEEC
T ss_pred EEEEeC
Confidence 999997
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-65 Score=617.57 Aligned_cols=577 Identities=14% Similarity=0.131 Sum_probs=449.3
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
+.+.+.+++|||||++ |++++ ++.|+|||+.+++... .+.+|.+.|++++|||||++||
T Consensus 17 ~~g~~~~~~~spdg~~-l~~~~-~~~v~l~~~~~~~~~~-------------------~~~~h~~~v~~~~~spdg~~la 75 (611)
T 1nr0_A 17 ARGTAVVLGNTPAGDK-IQYCN-GTSVYTVPVGSLTDTE-------------------IYTEHSHQTTVAKTSPSGYYCA 75 (611)
T ss_dssp CTTCCCCCEECTTSSE-EEEEE-TTEEEEEETTCSSCCE-------------------EECCCSSCEEEEEECTTSSEEE
T ss_pred ccCceeEEeeCCCCCE-EEeCC-CCEEEEecCCCcccCe-------------------EecCCCCceEEEEECCCCcEEE
Confidence 5788899999999995 88877 6799999998876654 4789999999999999999999
Q ss_pred EEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCC----CCEEEEeCCCCcceeEeeccccCE
Q 001248 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD----KTIKVWDATNGAKQYIFEGHEAPV 512 (1114)
Q Consensus 437 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~h~~~v 512 (1114)
+|+.|++|+|||+.+++.. ....+.+|.+.|.+++|+||++ .|++++.+ ++|++|| +++.+..+.+|...|
T Consensus 76 sg~~d~~v~lWd~~~~~~~-~~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v 150 (611)
T 1nr0_A 76 SGDVHGNVRIWDTTQTTHI-LKTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAM 150 (611)
T ss_dssp EEETTSEEEEEESSSTTCC-EEEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCE
T ss_pred EEeCCCCEEEeECCCCcce-eeEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee--CCCCcceecCCCCCc
Confidence 9999999999999765533 2236789999999999999999 67776654 3577776 577788899999999
Q ss_pred EEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEE
Q 001248 513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 592 (1114)
Q Consensus 513 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~ 592 (1114)
.+++|+++.. ..|++++.|++|++||..+.+....+..|...|.+++|+|+|+ +|+++
T Consensus 151 ~~v~f~p~~~-~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~---------------------~las~ 208 (611)
T 1nr0_A 151 NSVDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGS---------------------LFAST 208 (611)
T ss_dssp EEEEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSS---------------------EEEEE
T ss_pred eEEEECCCCC-eEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCC---------------------EEEEE
Confidence 9999876532 3699999999999999887666667777777777777666665 79999
Q ss_pred eCCCeEEEEECCCcceEEEeccC-----CCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccC
Q 001248 593 GDDFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT 667 (1114)
Q Consensus 593 ~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 667 (1114)
+.|++|++||+.+++.+..+... +|...|.+++|+|+|++|++++.|++|++||+.++ +....+..+.....
T Consensus 209 s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~-~~~~~~~~~~~~~~-- 285 (611)
T 1nr0_A 209 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL-KVEKTIPVGTRIED-- 285 (611)
T ss_dssp ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEEEEECCSSGGG--
T ss_pred ECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCC-ceeeeecCCCCccc--
Confidence 99999999999999988887421 34568999999999999999999999999999887 44444432110000
Q ss_pred CCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCc
Q 001248 668 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE 747 (1114)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~ 747 (1114)
.......++..+++++.|+.+++|+...... ... .
T Consensus 286 --------------------------------------~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~---~~~----~ 320 (611)
T 1nr0_A 286 --------------------------------------QQLGIIWTKQALVSISANGFINFVNPELGSI---DQV----R 320 (611)
T ss_dssp --------------------------------------CEEEEEECSSCEEEEETTCCEEEEETTTTEE---EEE----E
T ss_pred --------------------------------------eeEEEEEcCCEEEEEeCCCcEEEEeCCCCCc---ceE----E
Confidence 0000112567899999999999999765321 111 1
Q ss_pred cccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEe
Q 001248 748 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 827 (1114)
Q Consensus 748 ~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s 827 (1114)
.+|...|.+++|+|+|++|++++.|+.|++||+.. +....... .+|...|.+++++
T Consensus 321 ~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~----------------------~~~~~~~~--~~h~~~v~~~~~s 376 (611)
T 1nr0_A 321 YGHNKAITALSSSADGKTLFSADAEGHINSWDIST----------------------GISNRVFP--DVHATMITGIKTT 376 (611)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT----------------------CCEEECSS--CSCSSCEEEEEEC
T ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC----------------------Cceeeecc--cCCcceEEEEEEC
Confidence 35889999999999999999999999999998753 22222111 2388899999999
Q ss_pred eCCCEEEEEe-CCeEEEEEcCCCcccccc---CCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeeccccc
Q 001248 828 KNDSYVMSAS-GGKISLFNMMTFKTMATF---MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 903 (1114)
Q Consensus 828 ~d~~~l~~~~-dg~i~iwd~~~~~~~~~~---~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~ 903 (1114)
+++. +++++ |+++++|++.++...... ........+++|+| ++.+++++ .++.+++|+ .++ +..+. |..
T Consensus 377 ~~~~-l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~~~-~~~~v~~~~--~~~-~~~~~-~~~ 449 (611)
T 1nr0_A 377 SKGD-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA-DGDIAVAA-CYKHIAIYS--HGK-LTEVP-ISY 449 (611)
T ss_dssp TTSC-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECT-TSSCEEEE-ESSEEEEEE--TTE-EEEEE-CSS
T ss_pred CCCc-EEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeC-CCcEEEEE-eCceEEEEe--CCc-eeeee-cCC
Confidence 8775 55555 999999998875543210 11234568899999 88777777 467899998 344 45554 888
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCC
Q 001248 904 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTK 982 (1114)
Q Consensus 904 ~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~ 982 (1114)
.+++++|+|||++||+|+.|++|++||+.++.... ... .+|. ..|.+++|+|||++|++ +.|+.|++|++.+
T Consensus 450 ~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~---~~~-~~h~---~~v~~v~fspdg~~las~s~d~~v~~w~~~~ 522 (611)
T 1nr0_A 450 NSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE---VKT-IVHP---AEITSVAFSNNGAFLVATDQSRKVIPYSVAN 522 (611)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE---EEE-EECS---SCEEEEEECTTSSEEEEEETTSCEEEEEGGG
T ss_pred CceEEEEeCCCCEEEEeCCCCeEEEEEccCCceee---eec-cCCC---CceEEEEECCCCCEEEEEcCCCCEEEEEcCC
Confidence 89999999999999999999999999998753211 111 2333 47999999999999999 6899999999988
Q ss_pred -CceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCee-e-EEeCCCcccCCCCCCCCccceEEEecCCC
Q 001248 983 -LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL-R-CRINPSAYLPAGVSSSNVHPLVIAAHPQE 1059 (1114)
Q Consensus 983 -~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~-~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~d 1059 (1114)
++........+|...|.+++|+|||++||+|+.|++|++||+.++.. . ..+. +|....|. +++|+| |
T Consensus 523 ~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~-------~h~~~~v~--~v~fs~-d 592 (611)
T 1nr0_A 523 NFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKG-------AHAMSSVN--SVIWLN-E 592 (611)
T ss_dssp TTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETT-------SSTTSCEE--EEEEEE-T
T ss_pred CCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhc-------cCcccCee--EEEEcC-C
Confidence 65554422335999999999999999999999999999999988753 2 2222 44223355 899999 5
Q ss_pred CCeEEEEeCCCcEEEEecc
Q 001248 1060 PNEFALGLSDGGVHVFEPL 1078 (1114)
Q Consensus 1060 ~~~l~s~~~Dg~v~vW~i~ 1078 (1114)
++ |++++.||+|++|+++
T Consensus 593 ~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 593 TT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp TE-EEEEETTSCEEEEECC
T ss_pred CE-EEEecCCCCEEEEecc
Confidence 66 9999999999999973
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-61 Score=583.98 Aligned_cols=540 Identities=14% Similarity=0.185 Sum_probs=426.9
Q ss_pred EeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCC
Q 001248 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1114)
...+|.+.|++++|||||++ ||+|+.||+|+|||+.+++..... .+.+|.+.|.+++|+|||
T Consensus 54 ~~~~h~~~v~~~~~spdg~~-lasg~~d~~v~lWd~~~~~~~~~~-----------------~~~~~~~~v~~v~fs~dg 115 (611)
T 1nr0_A 54 IYTEHSHQTTVAKTSPSGYY-CASGDVHGNVRIWDTTQTTHILKT-----------------TIPVFSGPVKDISWDSES 115 (611)
T ss_dssp EECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEESSSTTCCEEE-----------------EEECSSSCEEEEEECTTS
T ss_pred EecCCCCceEEEEECCCCcE-EEEEeCCCCEEEeECCCCcceeeE-----------------eecccCCceEEEEECCCC
Confidence 34469999999999999995 999999999999999765443211 367899999999999999
Q ss_pred CeEEEEeCC----CeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeecc
Q 001248 433 SLFGVAYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH 508 (1114)
Q Consensus 433 ~~las~~~d----g~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h 508 (1114)
++||+++.+ +.|++|| +++... .+.+|...|.+++|+|++.. .|++|+.|++|++||..+++++.++.+|
T Consensus 116 ~~l~~~~~~~~~~~~v~~wd--~~~~~~---~l~gh~~~v~~v~f~p~~~~-~l~s~s~D~~v~lwd~~~~~~~~~l~~H 189 (611)
T 1nr0_A 116 KRIAAVGEGRERFGHVFLFD--TGTSNG---NLTGQARAMNSVDFKPSRPF-RIISGSDDNTVAIFEGPPFKFKSTFGEH 189 (611)
T ss_dssp CEEEEEECCSSCSEEEEETT--TCCBCB---CCCCCSSCEEEEEECSSSSC-EEEEEETTSCEEEEETTTBEEEEEECCC
T ss_pred CEEEEEECCCCceeEEEEee--CCCCcc---eecCCCCCceEEEECCCCCe-EEEEEeCCCeEEEEECCCCeEeeeeccc
Confidence 999999865 3677776 455444 68899999999999999874 5999999999999999999999999999
Q ss_pred ccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeec-------CCCCeeEEEEEecCCCeEEeeecccceeEEE
Q 001248 509 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-------APGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581 (1114)
Q Consensus 509 ~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-------~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~ 581 (1114)
...|.+++|++ ++.+|++++.|++|++||+.+++....+. .|...|.+++|
T Consensus 190 ~~~V~~v~fsp--dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~-------------------- 247 (611)
T 1nr0_A 190 TKFVHSVRYNP--DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTW-------------------- 247 (611)
T ss_dssp SSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEE--------------------
T ss_pred cCceEEEEECC--CCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEE--------------------
Confidence 99999999865 56899999999999999998876655542 34445555555
Q ss_pred ecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCC-CCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeecccc
Q 001248 582 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG-LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL 660 (1114)
Q Consensus 582 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 660 (1114)
+|++++|++++.|++|++||+.+++.+..+..+.. ...+..+.| ++..+++++.|+.+++|+..++ .....+.+|
T Consensus 248 -spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~-~~~~~~~gh 323 (611)
T 1nr0_A 248 -SPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPELG-SIDQVRYGH 323 (611)
T ss_dssp -CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETTTT-EEEEEECCC
T ss_pred -CCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCcEEEEeCCCC-CcceEEcCC
Confidence 45555899999999999999999998888864321 112334555 7889999999999999999877 456666677
Q ss_pred ccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccc
Q 001248 661 AYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQC 740 (1114)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~ 740 (1114)
...+.. ..+.+++..+++++.|+.|++||+........
T Consensus 324 ~~~v~~-----------------------------------------l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~- 361 (611)
T 1nr0_A 324 NKAITA-----------------------------------------LSSSADGKTLFSADAEGHINSWDISTGISNRV- 361 (611)
T ss_dssp SSCEEE-----------------------------------------EEECTTSSEEEEEETTSCEEEEETTTCCEEEC-
T ss_pred CCCEEE-----------------------------------------EEEeCCCCEEEEEeCCCcEEEEECCCCceeee-
Confidence 654432 22346789999999999999999986432211
Q ss_pred cccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCC
Q 001248 741 RSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEA 820 (1114)
Q Consensus 741 ~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~ 820 (1114)
...+|...|.+++|++++ .+++++.|+.+++|++......... .... .....
T Consensus 362 -----~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~~-----------------~~~~-----~~~~~ 413 (611)
T 1nr0_A 362 -----FPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSSK-----------------AVAN-----KLSSQ 413 (611)
T ss_dssp -----SSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTTS-----------------CCEE-----ECSSC
T ss_pred -----cccCCcceEEEEEECCCC-cEEEEEcCCceEEeecCCccccccc-----------------eeee-----ecCCC
Confidence 113488899999999776 5889999999999987542211000 0000 02334
Q ss_pred ccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceE--EEee
Q 001248 821 VPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV--KSKL 898 (1114)
Q Consensus 821 v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~--~~~l 898 (1114)
..+++++|+|+.++++.++.+++|+ .++ +..+. |...+.+++|+| ++++||+|+.|++|++||+.+++. +..
T Consensus 414 ~~~~~~s~dg~~~~~~~~~~v~~~~--~~~-~~~~~-~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~~~~~- 487 (611)
T 1nr0_A 414 PLGLAVSADGDIAVAACYKHIAIYS--HGK-LTEVP-ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKT- 487 (611)
T ss_dssp EEEEEECTTSSCEEEEESSEEEEEE--TTE-EEEEE-CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEE-
T ss_pred CcEEEEeCCCcEEEEEeCceEEEEe--CCc-eeeee-cCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCceeeeec-
Confidence 6789999999999888899999998 333 44454 777899999999 999999999999999999987653 234
Q ss_pred cccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC-CccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEE
Q 001248 899 KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG-WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLA 976 (1114)
Q Consensus 899 ~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~ 976 (1114)
.+|...|++++|+|||++|++++.|++|++|++.+ ++... .....+|. ..|.+++|+|||++|++ +.|+.|+
T Consensus 488 ~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~---~~~~~~H~---~~V~~v~fspdg~~lasgs~D~~v~ 561 (611)
T 1nr0_A 488 IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH---TNSWTFHT---AKVACVSWSPDNVRLATGSLDNSVI 561 (611)
T ss_dssp EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC---CCCCCCCS---SCEEEEEECTTSSEEEEEETTSCEE
T ss_pred cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceee---eeeeeecc---cceeEEEECCCCCEEEEEECCCcEE
Confidence 67999999999999999999999999999999986 32211 11122344 48999999999999999 6899999
Q ss_pred EEEcCCCceeeeeecCCC-CcCeeEEEECCCCCEEEEEEcCCeEEEEEcC
Q 001248 977 IFETTKLECVKQWVPRES-SAPITHATFSCDSQLVYACFLDATVCVFSAA 1025 (1114)
Q Consensus 977 iwd~~~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~ 1025 (1114)
+||+.++.........+| ...|++++|+||++ |++++.|++|++|++.
T Consensus 562 lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 562 VWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp EEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred EEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 999998764321223478 89999999999998 9999999999999973
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-60 Score=576.81 Aligned_cols=551 Identities=23% Similarity=0.358 Sum_probs=452.5
Q ss_pred CCCChhhhhcccCCCCCccccccCcccccccccCCCCcCCCCcCCCCCCCCCcceeEec-cCCCCceEEEEcCCCCeEEE
Q 001248 297 PSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTL-NQGSSPMSMDFHPVQQTLLL 375 (1114)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~spdg~~ll~ 375 (1114)
.+||+++++.... +..++||.. . .+..+.+ +|.+.|++++|||||++ ||
T Consensus 24 ~spdg~~las~~~--------d~~v~iWd~--~-------------------~~~~~~l~gh~~~V~~l~fspdg~~-la 73 (577)
T 2ymu_A 24 FSPDGQTIASASD--------DKTVKLWNR--N-------------------GQLLQTLTGHSSSVWGVAFSPDGQT-IA 73 (577)
T ss_dssp ECTTSSCEEEEET--------TSEEEEECT--T-------------------SCEEEEEECCSSCEEEEEECTTSSE-EE
T ss_pred ECCCCCEEEEEeC--------CCEEEEEEC--C-------------------CCEEEEEeCCCCCEEEEEECCCCCE-EE
Confidence 3578877776543 566788831 1 2233444 59999999999999995 99
Q ss_pred EEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCcee
Q 001248 376 VGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEV 455 (1114)
Q Consensus 376 tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~ 455 (1114)
+|+.|++|+|||.. ++.+. .+.+|...|.+++|+|||++|++++.|+.+++|+.......
T Consensus 74 s~~~d~~i~vWd~~-~~~~~-------------------~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~ 133 (577)
T 2ymu_A 74 SASDDKTVKLWNRN-GQLLQ-------------------TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ 133 (577)
T ss_dssp EEETTSCEEEEETT-SCEEE-------------------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEE
T ss_pred EEeCCCEEEEEECC-CCEEE-------------------EEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceee
Confidence 99999999999964 55544 37889999999999999999999999999999998764322
Q ss_pred eeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeE
Q 001248 456 RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKI 535 (1114)
Q Consensus 456 ~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i 535 (1114)
...+|...|.++.|+|++. .+++++.++.+++|+. ..........|...|.++++++ ++.++++++.|+.|
T Consensus 134 ----~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v 204 (577)
T 2ymu_A 134 ----TLTGHSSSVWGVAFSPDGQ--TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP--DGQTIASASDDKTV 204 (577)
T ss_dssp ----EECCCSSCEEEEEECTTSS--CEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECT--TSSCEEEEETTSEE
T ss_pred ----eccCCCCceeeeeeecCCc--cceecccccceecccc-ceeeeeeccCCCcceeeeeecC--CCCEEEEEcCCCEE
Confidence 4678999999999999999 6889999999999994 4556677788999999999754 55799999999999
Q ss_pred EEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccC
Q 001248 536 KAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD 615 (1114)
Q Consensus 536 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 615 (1114)
++||.. .+....+..+...|.+++|+|++. ++++++.|+.|++||. +++.+..+..+
T Consensus 205 ~~w~~~-~~~~~~~~~~~~~v~~~~~s~dg~---------------------~l~~~~~d~~i~~w~~-~~~~~~~~~~~ 261 (577)
T 2ymu_A 205 KLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQ---------------------TIASASDDKTVKLWNR-NGQLLQTLTGH 261 (577)
T ss_dssp EEECTT-SCEEEEEECCSSCEEEEEECTTSS---------------------CEEEEETTSCEEEECT-TSCEEEEECCC
T ss_pred EEEeCC-CcEEEEEecCCCCEEEEEECCCCC---------------------EEEEEeCCCEEEEEeC-CCCEEEEEecC
Confidence 999964 344555666666666666665554 7999999999999996 56777777765
Q ss_pred CCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhcccccccccc
Q 001248 616 GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA 695 (1114)
Q Consensus 616 ~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1114)
...|.+++|+|+++.+++++.|+.|++|+... +....+.+|...+..
T Consensus 262 --~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~--~~~~~~~~h~~~v~~----------------------------- 308 (577)
T 2ymu_A 262 --SSSVNGVAFRPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVWG----------------------------- 308 (577)
T ss_dssp --SSCEEEEEECTTSSEEEEEETTSCEEEEETTS--CEEEEECCCSSCEEE-----------------------------
T ss_pred --CCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC--cEEEEEecCCCCeEE-----------------------------
Confidence 45799999999999999999999999999643 455566666543321
Q ss_pred ccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceE
Q 001248 696 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH 775 (1114)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i 775 (1114)
..+.+++..+++++.|+.+++|+..... ...+ .+|...+.+++|+|+++.+++++.|+.+
T Consensus 309 ------------~~~~~~~~~l~t~~~d~~i~~w~~~~~~----~~~~----~~~~~~v~~~~~s~~g~~l~~~~~dg~v 368 (577)
T 2ymu_A 309 ------------VAFSPDGQTIASASDDKTVKLWNRNGQH----LQTL----TGHSSSVWGVAFSPDGQTIASASDDKTV 368 (577)
T ss_dssp ------------EEECTTSSEEEEEETTSCEEEEETTSCE----EEEE----CCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred ------------EEECCCCCEEEEEeCCCeEEEEeCCCCe----eEEE----eCCCCCEEEEEECCCCCEEEEEeCCCEE
Confidence 2234577889999999999999976421 1111 3478899999999999999999999999
Q ss_pred EEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccc
Q 001248 776 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMAT 854 (1114)
Q Consensus 776 ~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~ 854 (1114)
++|+... ..+.. +. +|...|.+++|+||+++|++++ |+.|++||. +++.+..
T Consensus 369 ~~~~~~~-----------------------~~~~~-~~--~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~ 421 (577)
T 2ymu_A 369 KLWNRNG-----------------------QLLQT-LT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQT 421 (577)
T ss_dssp EEEETTC-----------------------CEEEE-EE--CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEE
T ss_pred EEEcCCC-----------------------CEEEE-ec--CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEE
Confidence 9998431 11111 12 2888999999999999999998 899999996 5678888
Q ss_pred cCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 001248 855 FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 934 (1114)
Q Consensus 855 ~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~ 934 (1114)
+.+|...|++++|+| ++++|++++.|+.|++||. +++.+..+.+|...|++++|+||+++|++++.|++|++||...
T Consensus 422 ~~~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~- 498 (577)
T 2ymu_A 422 LTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG- 498 (577)
T ss_dssp EECCSSCEEEEEECT-TSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS-
T ss_pred ecCCCCCeEEEEECC-CCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC-
Confidence 999999999999999 8999999999999999996 5677889999999999999999999999999999999999654
Q ss_pred ccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEE
Q 001248 935 EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYAC 1013 (1114)
Q Consensus 935 ~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~ 1013 (1114)
+ .+..+.+|. ..|++++|+|||++|++ +.|+.|++||. +++++..+. +|.+.|++++|+|||++|+++
T Consensus 499 ~-----~~~~~~~h~---~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~--~h~~~v~~~~fs~dg~~l~s~ 567 (577)
T 2ymu_A 499 Q-----LLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT--GHSSSVWGVAFSPDGQTIASA 567 (577)
T ss_dssp C-----EEEEEECCS---SCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE--CCSSCEEEEEECTTSSCEEEE
T ss_pred C-----EEEEEeCCC---CCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc--CCCCCEEEEEEcCCCCEEEEE
Confidence 2 334445555 48999999999999999 58899999996 577777776 899999999999999999999
Q ss_pred EcCCeEEEEE
Q 001248 1014 FLDATVCVFS 1023 (1114)
Q Consensus 1014 s~Dg~I~vwd 1023 (1114)
+.|++|++||
T Consensus 568 ~~D~~i~~Wd 577 (577)
T 2ymu_A 568 SSDKTVKLWN 577 (577)
T ss_dssp ETTSCEEEEC
T ss_pred eCCCEEEEeC
Confidence 9999999997
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-60 Score=632.74 Aligned_cols=597 Identities=15% Similarity=0.171 Sum_probs=489.7
Q ss_pred EeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCC
Q 001248 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1114)
...+|.+.|++++|||||++ |++|+.||+|+|||+.+++.+. .+.+|.+.|.+++|+|||
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~-l~s~~~d~~i~vw~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~ 669 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQR-IASCGADKTLQVFKAETGEKLL-------------------DIKAHEDEVLCCAFSSDD 669 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCCEEE-------------------EECCCSSCEEEEEECTTS
T ss_pred EEecccccEEEEEECCCCCE-EEEEeCCCeEEEEECCCCCEEE-------------------EeccCCCCEEEEEEecCC
Confidence 44469999999999999995 9999999999999999998776 377999999999999999
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCE
Q 001248 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 512 (1114)
Q Consensus 433 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 512 (1114)
++||+++.|+.|+|||+.+++.+. .+.+|...|.+++|+|++...++++|+.|+.|++||+.+++++.++.+|.+.|
T Consensus 670 ~~l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v 746 (1249)
T 3sfz_A 670 SYIATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSV 746 (1249)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCE
T ss_pred CEEEEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCE
Confidence 999999999999999999998766 68899999999999997655589999999999999999999999999999999
Q ss_pred EEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCC-------------CCeeEEEEEecCCCeEEee--------
Q 001248 513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP-------------GRWCTTMAYSADGTRTYQG-------- 571 (1114)
Q Consensus 513 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-------------~~~v~~~~~s~~g~~~~~~-------- 571 (1114)
.+++|++ ++.++++++.||.|++||+.+......+... ...+.+++|+|+|..++.+
T Consensus 747 ~~~~~sp--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~ 824 (1249)
T 3sfz_A 747 NHCRFSP--DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLF 824 (1249)
T ss_dssp EEEEECS--STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEE
T ss_pred EEEEEec--CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEE
Confidence 9999865 5579999999999999999887655544321 2357788899998755443
Q ss_pred -------------ecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeC
Q 001248 572 -------------FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN 638 (1114)
Q Consensus 572 -------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 638 (1114)
.+...+..++|+|+++++++++.+|.|++||+.++..+..+..| ...|.+++|+|+|+++++++.
T Consensus 825 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h--~~~v~~v~~spdg~~l~s~s~ 902 (1249)
T 3sfz_A 825 DIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGH--LSWVHGVMFSPDGSSFLTASD 902 (1249)
T ss_dssp ETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEEEEEET
T ss_pred EecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCC--ccceEEEEECCCCCEEEEEeC
Confidence 33456788999999999999999999999999999999888866 457999999999999999999
Q ss_pred CCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccc
Q 001248 639 DNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRI 718 (1114)
Q Consensus 639 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 718 (1114)
||.|++|++.+............. .....+....++
T Consensus 903 dg~v~vw~~~~~~~~~~~~~~~~~--------------------------------------------~~~~~~~~~~~~ 938 (1249)
T 3sfz_A 903 DQTIRVWETKKVCKNSAIVLKQEI--------------------------------------------DVVFQENETMVL 938 (1249)
T ss_dssp TSCEEEEEHHHHHSCCSSSEEEEE--------------------------------------------EEEEETTEEEEE
T ss_pred CCeEEEEEccccceeeeeccccee--------------------------------------------eEEEcCCCcEEE
Confidence 999999998754211110000000 000112233344
Q ss_pred cccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCcccccccc
Q 001248 719 TEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQ 798 (1114)
Q Consensus 719 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 798 (1114)
.......+.++........ ......+.+++|+|+++.+++++.+|.|++|++..
T Consensus 939 ~~~~~~~~~~~~~~~~~~~----------~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~---------------- 992 (1249)
T 3sfz_A 939 AVDNIRGLQLIAGKTGQID----------YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN---------------- 992 (1249)
T ss_dssp EEESSSSEEEEEESSCCEE----------EECCSCEEEEEECTTSSEEEEEETTSCCEEEETTT----------------
T ss_pred EecCCcceEEEecCcceEE----------EcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCC----------------
Confidence 4555566666665432111 11456799999999999999999999999998753
Q ss_pred ccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEE
Q 001248 799 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAI 877 (1114)
Q Consensus 799 ~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~ 877 (1114)
+..... +. +|...|.+++|+|++++|++++ ||.|++||+.+++... +..|...|.+++|+| ++ .+++
T Consensus 993 ------~~~~~~-~~--~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~-~~-~l~~ 1060 (1249)
T 3sfz_A 993 ------NRVFSS-GV--GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQ-DS-RLLS 1060 (1249)
T ss_dssp ------TSCEEE-CC--CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECS-SS-EEEE
T ss_pred ------Cceeee-cc--cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcC-CC-cEEE
Confidence 222211 12 3889999999999999999998 9999999999887664 557899999999999 65 5678
Q ss_pred EeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceE
Q 001248 878 GMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTR 957 (1114)
Q Consensus 878 g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 957 (1114)
++.||.|++||+.+++.+..+.+|.+.|++++|+||+++|++++.|++|++||+.+++. +....+|. ..|.+
T Consensus 1061 ~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~-----~~~l~~h~---~~v~~ 1132 (1249)
T 3sfz_A 1061 WSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP-----LHELKGHN---GCVRC 1132 (1249)
T ss_dssp EESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSC-----SBCCCCCS---SCEEE
T ss_pred EECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcce-----eeeeccCC---CcEEE
Confidence 89999999999999999999999999999999999999999999999999999988543 34445554 47999
Q ss_pred EEEccCCcEEEE-EeCCeEEEEEcCCCceeeeee-------cCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCee
Q 001248 958 VQFHQDQIHFLV-VHETQLAIFETTKLECVKQWV-------PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1029 (1114)
Q Consensus 958 v~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~-------~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~ 1029 (1114)
++|+|||++|++ +.|+.|++||+.+++.+..+. ..+|...|++++|+|||++|++++ |.|++||+.+++.
T Consensus 1133 ~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A 1133 SAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDS 1210 (1249)
T ss_dssp EEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBC
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCCce
Confidence 999999999999 578999999999998877651 136889999999999999999885 9999999999998
Q ss_pred eEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccC
Q 001248 1030 RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1030 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~ 1079 (1114)
+..+. +| ...+. +++|+| |+.+|++++.||.|++|++.+
T Consensus 1211 ~~~~~-------~~-~~~i~--~~~~s~-dg~~l~~~~~dg~v~vw~l~e 1249 (1249)
T 3sfz_A 1211 SQTFY-------TN-GTNLK--KIHVSP-DFRTYVTVDNLGILYILQVLE 1249 (1249)
T ss_dssp CCCCC-------CS-SCCCC--CCEECS-SSCCEEEECTTCCEEEECCCC
T ss_pred eeeee-------cc-CCccc--EEEECC-CCCEEEEecCCcEEEEEeecC
Confidence 76654 22 22244 789999 689999999999999999853
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-58 Score=561.03 Aligned_cols=562 Identities=12% Similarity=0.145 Sum_probs=456.4
Q ss_pred cCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCc----ceeEEeeeeeeccCCCCcccccccccCCCCC-eeEEEEcC
Q 001248 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR----ERLVLRNFKVWDLGACSMPLQAALVKDPGVS-VNRVIWSP 430 (1114)
Q Consensus 356 ~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~----~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~-V~~l~~sp 430 (1114)
.|.+.|++++|||||++ |++++ ++.|+|||+.++ +... .+.+|... |.+++|+|
T Consensus 16 ~~~~~v~~~~~spdg~~-l~~~~-~~~v~v~~~~~~~~~~~~~~-------------------~~~~h~~~~v~~~~~sp 74 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNA-IAYPC-GKSAFVRCLDDGDSKVPPVV-------------------QFTGHGSSVVTTVKFSP 74 (615)
T ss_dssp CCTTCCCCCEEETTTTE-EEEEE-TTEEEEEECCSSCCSSCSEE-------------------EECTTTTSCEEEEEECS
T ss_pred CccCceeEEEECCCCCE-EEEec-CCeEEEEECCCCCCccccce-------------------EEecCCCceEEEEEECc
Confidence 48899999999999996 77777 889999999987 5554 47899999 99999999
Q ss_pred --CCCeEEEEeCCCeEEEEEccCCc-----eeeeeEeeccccCCeeEEEecCCCCeeEEEEecCC----CCEEEEeCCCC
Q 001248 431 --DGSLFGVAYSRHIVQIYSYHGGD-----EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD----KTIKVWDATNG 499 (1114)
Q Consensus 431 --dg~~las~~~dg~i~iwd~~~~~-----~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d----~~i~iwd~~~~ 499 (1114)
|+++||+|+.||.|+|||+.+++ .......+.+|...|.+++|+|+++ ++++++.+ +.|++|| .+
T Consensus 75 ~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d--~~ 150 (615)
T 1pgu_A 75 IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD--SG 150 (615)
T ss_dssp STTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT--TC
T ss_pred CCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE--CC
Confidence 99999999999999999998651 1223346788999999999999999 68888877 6788887 67
Q ss_pred cceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCC---eeEEEEEecCCCeEEeeecccc
Q 001248 500 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR---WCTTMAYSADGTRTYQGFRKRS 576 (1114)
Q Consensus 500 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~---~v~~~~~s~~g~~~~~~~~~~~ 576 (1114)
+.+..+.+|...|.+++|++... .++++++.|+.|++||+.+.+....+..+.. .|.+++|+|++
T Consensus 151 ~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------- 218 (615)
T 1pgu_A 151 NSLGEVSGHSQRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDS----------- 218 (615)
T ss_dssp CEEEECCSCSSCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTT-----------
T ss_pred CcceeeecCCccEEEEEECCCCC-cEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCC-----------
Confidence 78899999999999999876542 3899999999999999988777666666665 56666655550
Q ss_pred eeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEe-c---cCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCcc
Q 001248 577 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI-D---ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR 652 (1114)
Q Consensus 577 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~---~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~ 652 (1114)
++++++++.|+.|++||+.+++.+..+ . .+ ...|.+++|+ ++.+|++++.||.|++||+.++ +
T Consensus 219 ---------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~--~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~-~ 285 (615)
T 1pgu_A 219 ---------GEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPV--QGGIFALSWL-DSQKFATVGADATIRVWDVTTS-K 285 (615)
T ss_dssp ---------CCEEEEEETTCCEEEEETTTCCEEEECCBTTBCC--CSCEEEEEES-SSSEEEEEETTSEEEEEETTTT-E
T ss_pred ---------CCEEEEEeCCCeEEEEECCCCCEeEEeccccccc--CCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC-c
Confidence 447999999999999999999999888 3 34 4579999999 9999999999999999999987 4
Q ss_pred ceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEec
Q 001248 653 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT 732 (1114)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~ 732 (1114)
....+..+....... .....++++..+++++.++.+++|++.
T Consensus 286 ~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~l~~~~~~g~i~~~d~~ 327 (615)
T 1pgu_A 286 CVQKWTLDKQQLGNQ--------------------------------------QVGVVATGNGRIISLSLDGTLNFYELG 327 (615)
T ss_dssp EEEEEECCTTCGGGC--------------------------------------EEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred EEEEEcCCCCcccCc--------------------------------------eeEEEeCCCCeEEEEECCCCEEEEECC
Confidence 555554432110000 000112367889999999999999988
Q ss_pred cCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccC
Q 001248 733 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 812 (1114)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~ 812 (1114)
....... + .+|...|.+++| |+ +++++.||.|++|++. .+
T Consensus 328 ~~~~~~~-----~--~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~-------------------------~~---- 367 (615)
T 1pgu_A 328 HDEVLKT-----I--SGHNKGITALTV-NP---LISGSYDGRIMEWSSS-------------------------SM---- 367 (615)
T ss_dssp EEEEEEE-----E--CCCSSCEEEEET-TT---TEEEETTSCEEETTTT-------------------------EE----
T ss_pred CCcEEEE-----E--eCCCCCEEEEEe-cC---cEEECCCCeEEEEEch-------------------------hh----
Confidence 6322111 1 348899999999 88 9999999999998753 01
Q ss_pred CCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc
Q 001248 813 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 891 (1114)
Q Consensus 813 ~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~ 891 (1114)
. ..|...|.++++ +++.++++++ |+.|++||+.+++... .+.+++|+| ++.+++++ .++.+++|++.+
T Consensus 368 ~-~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~-------~~~~~~~s~-~~~~~~~~-~~~~~~~~~~~~ 436 (615)
T 1pgu_A 368 H-QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGS-------QPKVASANN-DGFTAVLT-NDDDLLILQSFT 436 (615)
T ss_dssp E-CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSS-------CEEEEEECS-SSEEEEEE-TTSEEEEEETTT
T ss_pred c-CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccC-------CceEEEEcC-CCCEEEEe-CCCceEEEeccC
Confidence 1 238899999999 6677888877 9999999998765443 688999999 88888877 789999999999
Q ss_pred ceEEEeecccccCeeEEEEcCCCCEEEEEeC-CCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-
Q 001248 892 DEVKSKLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV- 969 (1114)
Q Consensus 892 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~- 969 (1114)
++.+..+. |...+++++|+ +++|++++. |+.|++||+.+++... ....+|. ..|.+++|+|+|++|++
T Consensus 437 ~~~~~~~~-~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~----~~~~~~~---~~v~~~~~s~~g~~l~~~ 506 (615)
T 1pgu_A 437 GDIIKSVR-LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSF----DLKTPLR---AKPSYISISPSETYIAAG 506 (615)
T ss_dssp CCEEEEEE-CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEE----ECSSCCS---SCEEEEEECTTSSEEEEE
T ss_pred Cceeeecc-cCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccc----cccCCcc---CceEEEEECCCCCEEEEc
Confidence 99888887 88999999999 889999999 9999999999854321 3333443 48999999999999999
Q ss_pred EeCCeEEEEEcCCCceeeeeecCC-CCcCeeEEEECC----------CCCEEEEEEcCCeEEEEEcCCC-eeeEEeCCCc
Q 001248 970 VHETQLAIFETTKLECVKQWVPRE-SSAPITHATFSC----------DSQLVYACFLDATVCVFSAANL-KLRCRINPSA 1037 (1114)
Q Consensus 970 ~~d~~i~iwd~~~~~~~~~~~~~~-h~~~v~~l~~s~----------dg~~l~s~s~Dg~I~vwd~~~~-~~~~~~~~~~ 1037 (1114)
+.|+.|++||+.+++.+..+. + |...|++++|+| ++++|++++.||.|++||+.++ +.+..+.
T Consensus 507 ~~dg~i~iw~~~~~~~~~~~~--~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--- 581 (615)
T 1pgu_A 507 DVMGKILLYDLQSREVKTSRW--AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN--- 581 (615)
T ss_dssp ETTSCEEEEETTTTEEEECCS--CCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT---
T ss_pred CCCCeEEEeeCCCCcceeEee--cCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhh---
Confidence 588999999999999988765 5 899999999999 9999999999999999999998 6776655
Q ss_pred ccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCC
Q 001248 1038 YLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1080 (1114)
Q Consensus 1038 ~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~ 1080 (1114)
+|... |. +++|+| |+. |++++.||+|++|++.++
T Consensus 582 ----~h~~~-v~--~l~~s~-~~~-l~s~~~d~~v~iw~~~~~ 615 (615)
T 1pgu_A 582 ----AHKDG-VN--NLLWET-PST-LVSSGADACIKRWNVVLE 615 (615)
T ss_dssp ----SSTTC-EE--EEEEEE-TTE-EEEEETTSCEEEEEEC--
T ss_pred ----cCccc-eE--EEEEcC-CCC-eEEecCCceEEEEeeecC
Confidence 33232 55 899999 577 999999999999999763
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-56 Score=562.58 Aligned_cols=621 Identities=11% Similarity=0.114 Sum_probs=437.0
Q ss_pred eEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCC
Q 001248 352 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 431 (1114)
Q Consensus 352 ~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd 431 (1114)
....+|.+.|++++|+|+|+ +||+|+.||+|+||+..+++... ...|...|.+++|+|
T Consensus 11 ~~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~fsp- 68 (902)
T 2oaj_A 11 TNKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRFVK- 68 (902)
T ss_dssp EEEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEEET-
T ss_pred ccccCCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEE--------------------EcCCCCCEEEEEEcC-
Confidence 35567999999999999999 59999999999999998766543 234788999999999
Q ss_pred CCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcce---------
Q 001248 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ--------- 502 (1114)
Q Consensus 432 g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~--------- 502 (1114)
|++|++++.|++|+|||+.+++.+. .+. |.+.|++++|+|+++ ++++|+.||+|++||+.++++.
T Consensus 69 g~~L~S~s~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~ 142 (902)
T 2oaj_A 69 GIYLVVINAKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQK 142 (902)
T ss_dssp TTEEEEEETTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHHH
T ss_pred CCEEEEEECcCeEEEEECCCCcEEE---EEc-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceeccccc
Confidence 8899999999999999999988765 343 678999999999999 7999999999999999988754
Q ss_pred --eEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCC--eEEeeeccccee
Q 001248 503 --YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT--RTYQGFRKRSLG 578 (1114)
Q Consensus 503 --~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~--~~~~~~~~~~v~ 578 (1114)
..+.+|.+.|.+++|++.. +..+++|+.|+.| +||+++......+..+... ..+.+. .....++...+.
T Consensus 143 ~~~~~~~h~~~V~sl~~sp~~-~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~-----g~~~~~~~~~~~~~h~~~V~ 215 (902)
T 2oaj_A 143 SSFFPAARLSPIVSIQWNPRD-IGTVLISYEYVTL-TYSLVENEIKQSFIYELPP-----FAPGGDFSEKTNEKRTPKVI 215 (902)
T ss_dssp HHTCSSSCCCCCCEEEEETTE-EEEEEEECSSCEE-EEETTTTEEEEEECCCBCT-----TCCCSTTCCCTTSCBCCCEE
T ss_pred cccccccCCCCeEEEEEccCC-CCEEEEEeCCCcE-EEECCCCceEEEEecccCC-----cCCCcccccccccccCCCeE
Confidence 3446799999999998742 3689999999999 9999987666555443100 000000 000112234677
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEECCCcceEEEec-----cC-----------CCCCCcCeEEEc----CCC-CEEEEEe
Q 001248 579 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID-----AD-----------GGLPASPRIRFN----KDG-CLLAVST 637 (1114)
Q Consensus 579 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~-----------~~~~~v~~~~~s----~d~-~~l~~~~ 637 (1114)
.++|+|++.+|++++.||.|++||+.+++++.... .+ .+...|.+++|+ |++ .+|++|+
T Consensus 216 ~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~ 295 (902)
T 2oaj_A 216 QSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHK 295 (902)
T ss_dssp EEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEE
T ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCC
Confidence 78888888899999999999999999998876421 12 123368899995 443 5677776
Q ss_pred CC-----CcEEEEEccCCcc-----------------ceeecc-ccccccccCCCCCCCCccchhhhhhhhccccccccc
Q 001248 638 ND-----NGIKILATSDGIR-----------------LLRTFE-NLAYDASRTSENSKPTISPISAAAAAAATSAGLADR 694 (1114)
Q Consensus 638 ~d-----g~i~iwd~~~~~~-----------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1114)
.+ +.+.+|++..... ..+.+. .+...+. .+
T Consensus 296 ~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~--------~~------------------- 348 (902)
T 2oaj_A 296 SISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIV--------NI------------------- 348 (902)
T ss_dssp CSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEE--------EE-------------------
T ss_pred CCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceE--------EE-------------------
Confidence 65 3788888531100 000000 0000000 00
Q ss_pred cccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCce
Q 001248 695 AASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAI 774 (1114)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~ 774 (1114)
..............+...+++++.|+.+++|++..+...............|...|++++|++....
T Consensus 349 ----~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~--------- 415 (902)
T 2oaj_A 349 ----LPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNK--------- 415 (902)
T ss_dssp ----EECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHH---------
T ss_pred ----EECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHH---------
Confidence 0000000000011234467888889999999986432111100001111235678998888764432
Q ss_pred EEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCcccc
Q 001248 775 HLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMA 853 (1114)
Q Consensus 775 i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~ 853 (1114)
+|+...... ..+. ..+. +|...+.+++|+||+++|++|+ |++|++||+.++....
T Consensus 416 --~w~~~~~~~-----------------~~~~---~~l~--G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~ 471 (902)
T 2oaj_A 416 --LWLGALSAA-----------------QNKD---YLLK--GGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQD 471 (902)
T ss_dssp --HHHHHHHTT-----------------BCCC---CSCC--CSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTT
T ss_pred --HHHHHHhcc-----------------cCCC---Cccc--CCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccC
Confidence 233210000 0000 0122 3777888899999999999999 9999999998874321
Q ss_pred --cc---------CCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc------------------------------
Q 001248 854 --TF---------MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD------------------------------ 892 (1114)
Q Consensus 854 --~~---------~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~------------------------------ 892 (1114)
.+ .+|...|.+++|+| ++++||+|+.||+|+|||+.++
T Consensus 472 ~~~~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (902)
T 2oaj_A 472 NASFEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVL 550 (902)
T ss_dssp TBCEEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSE
T ss_pred CceEEeechhhcCCCCCCceeEEEecC-CCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCcccc
Confidence 11 17888999999999 9999999999999999999876
Q ss_pred ---------------eEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCC-CCCCCCCCce
Q 001248 893 ---------------EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPT-GRTPTAQSDT 956 (1114)
Q Consensus 893 ---------------~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~i~ 956 (1114)
+++..+.+|.+.|++|+||||| +||+|+.|++|+|||+++........+..+. +|. ..|+
T Consensus 551 ~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~---~~V~ 626 (902)
T 2oaj_A 551 VDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQS---ACVT 626 (902)
T ss_dssp EECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCC---CCEE
T ss_pred ccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccc---cceE
Confidence 2467889999999999999999 9999999999999999875432211123333 554 4799
Q ss_pred EEEEc-----cCC---cEEEE-EeCCeEEEEEc---CCCceeeeeecC---CCCcCeeEEE-EC----------------
Q 001248 957 RVQFH-----QDQ---IHFLV-VHETQLAIFET---TKLECVKQWVPR---ESSAPITHAT-FS---------------- 1004 (1114)
Q Consensus 957 ~v~fs-----pdg---~~l~~-~~d~~i~iwd~---~~~~~~~~~~~~---~h~~~v~~l~-~s---------------- 1004 (1114)
+++|+ ||| ++|++ +.|++|++||+ .+|++...+... .|.++|.+++ |+
T Consensus 627 sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~ 706 (902)
T 2oaj_A 627 CIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQN 706 (902)
T ss_dssp EEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHG
T ss_pred EEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhc
Confidence 99999 886 88888 68999999999 888887776521 1357888887 65
Q ss_pred ------CCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEE---E------ecCCCCCeEEEEeCC
Q 001248 1005 ------CDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVI---A------AHPQEPNEFALGLSD 1069 (1114)
Q Consensus 1005 ------~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~------~~~~d~~~l~s~~~D 1069 (1114)
+++.+|+++ +..|+||++.+++..++.- +|. ..+. ++ . |++ ++..|++++.|
T Consensus 707 l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~-------~~~-~~~~--~v~~~~~~~~~~~~~-~~~~l~~~~~~ 773 (902)
T 2oaj_A 707 LSKGLCIPGIVLITG--FDDIRLITLGKSKSTHKGF-------KYP-LAAT--GLSYISTVEKNNDRK-NLTVIITLEIN 773 (902)
T ss_dssp GGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEEEC-------SSC-EEEE--EEEEEEEECSSSCEE-EEEEEEEEETT
T ss_pred cCCCCCCCeEEEEEe--ccceEEEeCccccceeeEc-------ccc-eeee--EEEEEEecccccccc-CceEEEEEeCC
Confidence 455555544 8899999999999887663 111 1122 33 4 666 57899999999
Q ss_pred CcEEEEeccCCC--CcccCCCC
Q 001248 1070 GGVHVFEPLESE--GKWGVPPP 1089 (1114)
Q Consensus 1070 g~v~vW~i~~~~--~~~~~~~~ 1089 (1114)
|+|++|++++.+ ..+..+++
T Consensus 774 g~i~~~s~p~l~~~~~~~~~~~ 795 (902)
T 2oaj_A 774 GHLRVFTIPDFKEQMSEHIPFP 795 (902)
T ss_dssp SEEEEEETTTCCEEEEEECSSC
T ss_pred CcEEEEECcchHHHhhccCCcc
Confidence 999999999999 44444443
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-56 Score=592.16 Aligned_cols=568 Identities=17% Similarity=0.223 Sum_probs=465.2
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw 494 (1114)
.+.+|.+.|++++|||||++||+|+.||+|+|||+.+++.+. .+.+|.+.|.+++|+|+++ ++++++.|++|++|
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~vw 684 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDS--YIATCSADKKVKIW 684 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE---EeccCCCCEEEEEEecCCC--EEEEEeCCCeEEEE
Confidence 578999999999999999999999999999999999998766 6889999999999999999 79999999999999
Q ss_pred eCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecc
Q 001248 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1114)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~ 574 (1114)
|+.+++.+.++.+|...|.+++|++..++.++++++.|+.|++||+.++.....+..|...|.+++|+|++.
T Consensus 685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~-------- 756 (1249)
T 3sfz_A 685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE-------- 756 (1249)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTT--------
T ss_pred ECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCC--------
Confidence 999999999999999999999998877778999999999999999999887777777777777777666665
Q ss_pred cceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCC-----------CCCCcCeEEEcCCCCEEEEEeCCCcEE
Q 001248 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG-----------GLPASPRIRFNKDGCLLAVSTNDNGIK 643 (1114)
Q Consensus 575 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~s~d~~~l~~~~~dg~i~ 643 (1114)
++++++.||.|++||+.+++....+.... ....+.+++|+|+|+.+++++ ++.+.
T Consensus 757 -------------~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~ 822 (1249)
T 3sfz_A 757 -------------LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVL 822 (1249)
T ss_dssp -------------EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEE
T ss_pred -------------EEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEE
Confidence 79999999999999999988777664321 123688999999999999987 68999
Q ss_pred EEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCC
Q 001248 644 ILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESN 723 (1114)
Q Consensus 644 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 723 (1114)
+||..++........+|...+. ...+.+++..+++++.+
T Consensus 823 ~~d~~~~~~~~~~~~~~~~~v~-----------------------------------------~~~~sp~~~~l~~~~~d 861 (1249)
T 3sfz_A 823 LFDIHTSGLLAEIHTGHHSTIQ-----------------------------------------YCDFSPYDHLAVIALSQ 861 (1249)
T ss_dssp EEETTTCCEEEEEECSSSSCCC-----------------------------------------EEEECSSTTEEEEECSS
T ss_pred EEEecCCCceeEEcCCCCCceE-----------------------------------------EEEEcCCCCEEEEEeCC
Confidence 9999988444333334433222 12344677899999999
Q ss_pred CceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCc------------
Q 001248 724 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKA------------ 791 (1114)
Q Consensus 724 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~------------ 791 (1114)
+.+++|++......... .+|...|.+++|+|+++.+++++.||.+++|++...........
T Consensus 862 g~v~vwd~~~~~~~~~~-------~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1249)
T 3sfz_A 862 YCVELWNIDSRLKVADC-------RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENE 934 (1249)
T ss_dssp SCEEEEETTTTEEEEEE-------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTE
T ss_pred CeEEEEEcCCCceeeec-------CCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCC
Confidence 99999999864322211 34889999999999999999999999999999764321110000
Q ss_pred --c----ccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEE
Q 001248 792 --T----ASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATF 864 (1114)
Q Consensus 792 --~----~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~ 864 (1114)
. ....+.++...++..... +...+.+++++|+++++++|+ +|.|++||+.+++....+.+|...|++
T Consensus 935 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~ 1008 (1249)
T 3sfz_A 935 TMVLAVDNIRGLQLIAGKTGQIDYL------PEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRH 1008 (1249)
T ss_dssp EEEEEEESSSSEEEEEESSCCEEEE------CCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCC
T ss_pred cEEEEecCCcceEEEecCcceEEEc------ccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEE
Confidence 0 000122333333333221 456799999999999999999 899999999999999999999999999
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccccccccc
Q 001248 865 LAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQI 944 (1114)
Q Consensus 865 l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 944 (1114)
++|+| ++++|++++.||.|++||+.+++.. .+.+|...|.+++|++++ .+++++.|++|++||+.+++. ...
T Consensus 1009 l~~s~-dg~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~-----~~~ 1080 (1249)
T 3sfz_A 1009 IQFTA-DGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRI-----ERD 1080 (1249)
T ss_dssp EEECS-SSSCEEEECSSSBEEEEETTTTEEE-CCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCC-----CEE
T ss_pred EEECC-CCCEEEEEcCCCEEEEEECCCCceE-EEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCce-----eEE
Confidence 99999 8999999999999999999998865 466899999999999975 678999999999999998654 233
Q ss_pred CCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEE
Q 001248 945 PTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1023 (1114)
Q Consensus 945 ~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd 1023 (1114)
..+|. ..|.+++|+|||+++++ +.|+.|++||+.+++++..+. +|...|++++|+|||++|++++.||.|++||
T Consensus 1081 ~~~~~---~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~--~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd 1155 (1249)
T 3sfz_A 1081 FTCHQ---GTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK--GHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1155 (1249)
T ss_dssp EECCS---SCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCC--CCSSCEEEEEECSSSSEEEEEETTSCCCEEE
T ss_pred EcccC---CcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeec--cCCCcEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 34444 47899999999999999 589999999999999887765 8899999999999999999999999999999
Q ss_pred cCCCeeeEEeCCCccc--CCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCCC
Q 001248 1024 AANLKLRCRINPSAYL--PAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEG 1082 (1114)
Q Consensus 1024 ~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~~ 1082 (1114)
+.+++.+..+.+.... ..+| ...+. +++|+| |+.+|++++ |.|++||+.+++.
T Consensus 1156 ~~~~~~~~~~~~~~~~~~~~~~-~~~v~--~l~fs~-dg~~l~s~~--g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A 1156 VSDGQLLHSCAPISVEEGTATH-GGWVT--DVCFSP-DSKTLVSAG--GYLKWWNVATGDS 1210 (1249)
T ss_dssp SSSSCCCCCCCCCC-------C-CSCCC--EEEECT-TSSCEEEES--SSEEEBCSSSCBC
T ss_pred CCCCceEEEecccccccccccc-CceEE--EEEECC-CCCEEEECC--CeEEEEECCCCce
Confidence 9999988765321111 1122 22255 899999 689999885 9999999999884
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-55 Score=533.15 Aligned_cols=522 Identities=12% Similarity=0.156 Sum_probs=436.4
Q ss_pred eeEeccCCCC-ceEEEEcC--CCCeEEEEEecCCcEEEEEcCCc------ceeEEeeeeeeccCCCCcccccccccCCCC
Q 001248 351 VTRTLNQGSS-PMSMDFHP--VQQTLLLVGTNVGDIGLWEVGSR------ERLVLRNFKVWDLGACSMPLQAALVKDPGV 421 (1114)
Q Consensus 351 ~~~~~~h~~~-v~~v~~sp--dg~~ll~tg~~dg~v~iwd~~~~------~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~ 421 (1114)
.....+|.+. |++++|+| +|++ |++|+.||.|+|||+.++ +.... ..+.+|..
T Consensus 56 ~~~~~~h~~~~v~~~~~sp~~~~~~-l~s~~~dg~v~vw~~~~~~~~~~~~~~~~-----------------~~~~~~~~ 117 (615)
T 1pgu_A 56 VVQFTGHGSSVVTTVKFSPIKGSQY-LCSGDESGKVIVWGWTFDKESNSVEVNVK-----------------SEFQVLAG 117 (615)
T ss_dssp EEEECTTTTSCEEEEEECSSTTCCE-EEEEETTSEEEEEEEEEEGGGTEEEEEEE-----------------EEEECCSS
T ss_pred ceEEecCCCceEEEEEECcCCCCCE-EEEecCCCEEEEEeCCCCccccccccccc-----------------chhhcccc
Confidence 4445569999 99999999 9995 999999999999999765 21111 13667999
Q ss_pred CeeEEEEcCCCCeEEEEeCC----CeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCC
Q 001248 422 SVNRVIWSPDGSLFGVAYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT 497 (1114)
Q Consensus 422 ~V~~l~~spdg~~las~~~d----g~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~ 497 (1114)
.|.+++|+|+|++|++++.+ +.|.+|| +++.+. .+.+|...|.+++|+|+++. .+++++.|+.|++||+.
T Consensus 118 ~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~---~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~v~vwd~~ 191 (615)
T 1pgu_A 118 PISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLG---EVSGHSQRINACHLKQSRPM-RSMTVGDDGSVVFYQGP 191 (615)
T ss_dssp CEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEE---ECCSCSSCEEEEEECSSSSC-EEEEEETTTEEEEEETT
T ss_pred cEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcce---eeecCCccEEEEEECCCCCc-EEEEEeCCCcEEEEeCC
Confidence 99999999999999999987 6888888 455444 68899999999999999985 58999999999999999
Q ss_pred CCcceeEeecccc---CEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeee-c---CCCCeeEEEEEecCCCeEEe
Q 001248 498 NGAKQYIFEGHEA---PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-E---APGRWCTTMAYSADGTRTYQ 570 (1114)
Q Consensus 498 ~~~~~~~~~~h~~---~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~---~~~~~v~~~~~s~~g~~~~~ 570 (1114)
+++.+..+.+|.. .|.+++|+++ ++.++++++.|+.|++||+.+.+....+ . .+...|.+++|+ ++
T Consensus 192 ~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~----- 264 (615)
T 1pgu_A 192 PFKFSASDRTHHKQGSFVRDVEFSPD-SGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DS----- 264 (615)
T ss_dssp TBEEEEEECSSSCTTCCEEEEEECST-TCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SS-----
T ss_pred CcceeeeecccCCCCceEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CC-----
Confidence 9999999999999 9999998654 1579999999999999999988777666 4 566666666665 54
Q ss_pred eecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCC--CCCcCeEEEcCCCCEEEEEeCCCcEEEEEcc
Q 001248 571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG--LPASPRIRFNKDGCLLAVSTNDNGIKILATS 648 (1114)
Q Consensus 571 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~ 648 (1114)
+++++++.|+.|++||+.+++.+..+..+.. ...+.++.|+ ++.++++++.||.|++||+.
T Consensus 265 ----------------~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~ 327 (615)
T 1pgu_A 265 ----------------QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELG 327 (615)
T ss_dssp ----------------SEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETT
T ss_pred ----------------CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECC
Confidence 4799999999999999999999988876521 2346677775 89999999999999999998
Q ss_pred CCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeE
Q 001248 649 DGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKV 728 (1114)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i 728 (1114)
++ +....+.+|...+... .. ++ +++++.|+.+++
T Consensus 328 ~~-~~~~~~~~~~~~v~~~-----------------------------------------~~-~~---l~~~~~dg~i~~ 361 (615)
T 1pgu_A 328 HD-EVLKTISGHNKGITAL-----------------------------------------TV-NP---LISGSYDGRIME 361 (615)
T ss_dssp EE-EEEEEECCCSSCEEEE-----------------------------------------ET-TT---TEEEETTSCEEE
T ss_pred CC-cEEEEEeCCCCCEEEE-----------------------------------------Ee-cC---cEEECCCCeEEE
Confidence 86 5666666665543321 11 22 899999999999
Q ss_pred EEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccc
Q 001248 729 WKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM 808 (1114)
Q Consensus 729 w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~ 808 (1114)
|++.. +. ..|...|.+++| +++..+++++.|+.+++|++.....
T Consensus 362 w~~~~---------~~---~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~----------------------- 405 (615)
T 1pgu_A 362 WSSSS---------MH---QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEF----------------------- 405 (615)
T ss_dssp TTTTE---------EE---CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEEC-----------------------
T ss_pred EEchh---------hc---CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcc-----------------------
Confidence 99871 11 348899999999 6678899999999999998763221
Q ss_pred cccCCCCCCCCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeC-CCcEEEE
Q 001248 809 TNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-DSSIQIY 887 (1114)
Q Consensus 809 ~~~~~~~~~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~-dg~v~iw 887 (1114)
...+.+++++|++.+++++.++.+.+|+..+++.+..+. +...+.+++|+ +++|++++. ||.|++|
T Consensus 406 ---------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~l~~~~~~d~~i~~~ 472 (615)
T 1pgu_A 406 ---------GSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS---QNYVAVGLEEGNTIQVF 472 (615)
T ss_dssp ---------SSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC---SSEEEEEETTTSCEEEE
T ss_pred ---------cCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCCceEEEEc---CCEEEEeecCCCeEEEE
Confidence 125778999999999999889999999999988888877 78889999998 679999999 9999999
Q ss_pred EcccceEE-EeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCC-CCCCCCCceEEEEcc---
Q 001248 888 NVRVDEVK-SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG-RTPTAQSDTRVQFHQ--- 962 (1114)
Q Consensus 888 d~~~~~~~-~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~i~~v~fsp--- 962 (1114)
|+.+++.. ..+.+|...|++++|+|++++|++++.|+.|++||+.+++. +....+ |. ..|.+++|+|
T Consensus 473 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~-----~~~~~~~h~---~~v~~~~~sp~~~ 544 (615)
T 1pgu_A 473 KLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREV-----KTSRWAFRT---SKINAISWKPAEK 544 (615)
T ss_dssp ETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----EECCSCCCS---SCEEEEEECCCC-
T ss_pred ECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcc-----eeEeecCCC---CceeEEEEcCccc
Confidence 99998766 77889999999999999999999999999999999998654 233333 43 4899999999
Q ss_pred -------CCcEEEE-EeCCeEEEEEcCCC-ceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCC
Q 001248 963 -------DQIHFLV-VHETQLAIFETTKL-ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1026 (1114)
Q Consensus 963 -------dg~~l~~-~~d~~i~iwd~~~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~ 1026 (1114)
++++|++ +.|+.|++||+.++ +++..+. +|...|++++|+||++ |++++.||.|++|++.+
T Consensus 545 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 545 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN--AHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp -----CCSCCEEEEEETTSCEEEEESSCTTCCEEETT--SSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred cccccccCCCEEEEEcCCCcEEEEECCCCceechhhh--cCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 9999999 57999999999998 6666654 8899999999999999 99999999999999875
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-52 Score=520.02 Aligned_cols=611 Identities=10% Similarity=0.041 Sum_probs=425.8
Q ss_pred CCChhhhhcccCCCCCccccccCcccccccccCCCCcCCCCcCCCCCCCCCcceeEeccCCCCceEEEEcCCCCeEEEEE
Q 001248 298 SGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVG 377 (1114)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~spdg~~ll~tg 377 (1114)
+|++.+++.... +..|+||... ..+....+.|...|++++|+| |+ +|+++
T Consensus 26 spdg~~lAsgs~--------Dg~I~lw~~~--------------------~~~~~~~~~~~~~V~~l~fsp-g~-~L~S~ 75 (902)
T 2oaj_A 26 DFTQNLLAIATV--------TGEVHIYGQQ--------------------QVEVVIKLEDRSAIKEMRFVK-GI-YLVVI 75 (902)
T ss_dssp ETTTTEEEEEET--------TSEEEEECST--------------------TCEEEEECSSCCCEEEEEEET-TT-EEEEE
T ss_pred CCCCCEEEEEeC--------CCEEEEEeCC--------------------CcEEEEEcCCCCCEEEEEEcC-CC-EEEEE
Confidence 466777666553 5677888321 122345567899999999999 88 59999
Q ss_pred ecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeee
Q 001248 378 TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ 457 (1114)
Q Consensus 378 ~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~ 457 (1114)
+.|++|+|||+.+++.+.. +. |.+.|++++|+|++++|++|+.||+|++||+.+++....
T Consensus 76 s~D~~v~lWd~~~~~~~~~-------------------~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~ 135 (902)
T 2oaj_A 76 NAKDTVYVLSLYSQKVLTT-------------------VF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSF 135 (902)
T ss_dssp ETTCEEEEEETTTCSEEEE-------------------EE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred ECcCeEEEEECCCCcEEEE-------------------Ec-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccc
Confidence 9999999999999887653 22 567899999999999999999999999999998875311
Q ss_pred e--------EeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeecc------------------ccC
Q 001248 458 H--------LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH------------------EAP 511 (1114)
Q Consensus 458 ~--------~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h------------------~~~ 511 (1114)
. ..+.+|.+.|.+++|+|++.. .+++|+.|++| +||+++++++..+.+| ...
T Consensus 136 ~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~-~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~ 213 (902)
T 2oaj_A 136 KLDNLQKSSFFPAARLSPIVSIQWNPRDIG-TVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPK 213 (902)
T ss_dssp EECCHHHHHTCSSSCCCCCCEEEEETTEEE-EEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCC
T ss_pred eeccccccccccccCCCCeEEEEEccCCCC-EEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCC
Confidence 0 235689999999999997544 68899999999 9999999988888766 577
Q ss_pred EEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeec-----CC-------------CCeeEEEEEecCCCeEEeeec
Q 001248 512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-----AP-------------GRWCTTMAYSADGTRTYQGFR 573 (1114)
Q Consensus 512 v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-----~~-------------~~~v~~~~~s~~g~~~~~~~~ 573 (1114)
|.+++|++ +|.+|++++.||.|++||+++++.+.... .+ ...|.+++|++..
T Consensus 214 V~~v~fsp--dg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~-------- 283 (902)
T 2oaj_A 214 VIQSLYHP--NSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCEN-------- 283 (902)
T ss_dssp EEEEEECT--TSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECS--------
T ss_pred eEEEEEcC--CCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecC--------
Confidence 99999865 46899999999999999998876544211 11 2234444443221
Q ss_pred ccceeEEEecCCC-CEEEEEeCC-----CeEEEEECC------------------CcceEEEeccCCCCCCcCeEEEcC-
Q 001248 574 KRSLGVVQFDTTK-NRFLAAGDD-----FSIKFWDMD------------------SVQLLTSIDADGGLPASPRIRFNK- 628 (1114)
Q Consensus 574 ~~~v~~~~~~~~~-~~l~~~~~d-----g~i~iwd~~------------------~~~~~~~~~~~~~~~~v~~~~~s~- 628 (1114)
+|++ ..+++|+.+ ..+.+|++. +++....+... +...+.++.+.+
T Consensus 284 ---------~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~ 353 (902)
T 2oaj_A 284 ---------NPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLP-TNVPIVNILPIPR 353 (902)
T ss_dssp ---------STTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCS-SSSCEEEEEECCS
T ss_pred ---------CCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecC-CCCceEEEEECCC
Confidence 2332 346666655 378898842 22334444321 123577777755
Q ss_pred ---------CCCEEEEEeCCCcEEEEEccCCccceeecccc------ccccccCCCCCCCCccchhhhhhhhcccccccc
Q 001248 629 ---------DGCLLAVSTNDNGIKILATSDGIRLLRTFENL------AYDASRTSENSKPTISPISAAAAAAATSAGLAD 693 (1114)
Q Consensus 629 ---------d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1114)
+...+++++.||.|++|++.++.........+ ...+... +|
T Consensus 354 ~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~------~~------------------ 409 (902)
T 2oaj_A 354 QSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTS------MA------------------ 409 (902)
T ss_dssp SCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEE------EE------------------
T ss_pred CCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEE------EE------------------
Confidence 34578899999999999997763222211111 1100000 00
Q ss_pred ccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCc
Q 001248 694 RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNA 773 (1114)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg 773 (1114)
.+...++|+......... ..+-.+|...+..++|+|+++.+++++.|+
T Consensus 410 ----------------------------s~~~~~~w~~~~~~~~~~----~~~l~G~~~~v~sv~~spdg~~laSgs~Dg 457 (902)
T 2oaj_A 410 ----------------------------ASVPNKLWLGALSAAQNK----DYLLKGGVRTKRQKLPAEYGTAFITGHSNG 457 (902)
T ss_dssp ----------------------------EEEEHHHHHHHHHTTBCC----CCSCCCSBCCCCCCCCCSEEEEEEEEETTS
T ss_pred ----------------------------EEcCHHHHHHHHhcccCC----CCcccCCcCCCCcccccccCcEEEEecCCC
Confidence 001112232211000000 011134777788899999999999999999
Q ss_pred eEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCc--
Q 001248 774 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK-- 850 (1114)
Q Consensus 774 ~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~-- 850 (1114)
+|++||+....... . .++... +.. ..+.+|...|.+++|+||+++||+|+ ||+|+|||+.+++
T Consensus 458 tVrlWd~~~g~~~~-~--------~~~~~~---l~~--~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~ 523 (902)
T 2oaj_A 458 SVRIYDASHGDIQD-N--------ASFEVN---LSR--TLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFY 523 (902)
T ss_dssp EEEEEESSCCTTTT-T--------BCEEEE---HHH--HTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC-
T ss_pred cEEEEECCCccccC-C--------ceEEee---chh--hcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCcccc
Confidence 99999987542110 0 000000 000 00124889999999999999999999 9999999998663
Q ss_pred -------------------------------------------cccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 001248 851 -------------------------------------------TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY 887 (1114)
Q Consensus 851 -------------------------------------------~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iw 887 (1114)
++.++.+|...|++++||| || +||+|+.|++|+||
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lw 601 (902)
T 2oaj_A 524 SVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLI 601 (902)
T ss_dssp --------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB-TS-EEEEEETTSEEEEE
T ss_pred CccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecC-Cc-EEEEEeCCCcEEEE
Confidence 2566788999999999999 88 99999999999999
Q ss_pred EcccceEEE-----eec-ccccCeeEEEEc-----CCC---CEEEEEeCCCcEEEEeC---CCCccccccccccCCCCCC
Q 001248 888 NVRVDEVKS-----KLK-GHSKRITGLAFS-----HAL---NVLVSSGADSQLCVWSS---DGWEKQKNRFLQIPTGRTP 950 (1114)
Q Consensus 888 d~~~~~~~~-----~l~-~h~~~V~~l~~s-----~d~---~~l~s~s~D~~v~iwd~---~~~~~~~~~~~~~~~~~~~ 950 (1114)
|+.++..+. .+. +|.+.|++|+|+ ||| ++|++|+.|++|++||+ .+++. ...+.+|..
T Consensus 602 d~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~-----~~~~~~~~~ 676 (902)
T 2oaj_A 602 DRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKF-----DVQLMDITN 676 (902)
T ss_dssp ETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCE-----EEEEEEEEE
T ss_pred ECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcE-----EEEecCcee
Confidence 998877653 343 899999999999 885 89999999999999999 55442 222222221
Q ss_pred --CCCCceEEE-Ec----------------------cCCcEEEEEeCCeEEEEEcCCCceeeeeecCCCCcCeeEE---E
Q 001248 951 --TAQSDTRVQ-FH----------------------QDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHA---T 1002 (1114)
Q Consensus 951 --~~~~i~~v~-fs----------------------pdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l---~ 1002 (1114)
..+.|..++ |+ ++|..|+++ +..+++|++.++++.+... .|...+.++ .
T Consensus 677 ~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~-~~~ir~~~~~~~k~~~k~~--~~~~~~~~v~~~~ 753 (902)
T 2oaj_A 677 VTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG-FDDIRLITLGKSKSTHKGF--KYPLAATGLSYIS 753 (902)
T ss_dssp CCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC-SSEEEEECTTCCCEEEEEC--SSCEEEEEEEEEE
T ss_pred cCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe-ccceEEEeCccccceeeEc--ccceeeeEEEEEE
Confidence 013555555 65 456555554 8899999999999987764 455566665 5
Q ss_pred ------ECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEe
Q 001248 1003 ------FSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1067 (1114)
Q Consensus 1003 ------~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~ 1067 (1114)
|++++..|++++.||.|++|++.+++.+..+........ . .....+|.+ .|+.++-.+
T Consensus 754 ~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~~~~~----~--~~~~~~~~~-~G~~~~~~~ 817 (902)
T 2oaj_A 754 TVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHIPFPIAA----K--YITESSVLR-NGDIAIRVS 817 (902)
T ss_dssp EECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEECSSCCCH----H--HHTTCEECT-TSCEEEECS
T ss_pred eccccccccCceEEEEEeCCCcEEEEECcchHHHhhccCCccccc----c--cccceEEcC-CCCEEEEeC
Confidence 788999999999999999999999999988773221110 0 111355666 577666554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-45 Score=465.31 Aligned_cols=464 Identities=17% Similarity=0.225 Sum_probs=372.4
Q ss_pred ccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCe
Q 001248 355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 434 (1114)
Q Consensus 355 ~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 434 (1114)
.+|.+.|++++|||+|++ |++|+.||.|+|||+.+++.+. .+.+|.+.|.+++|+|+|++
T Consensus 10 ~~h~~~v~~i~~sp~~~~-la~~~~~g~v~iwd~~~~~~~~-------------------~~~~~~~~v~~~~~s~~~~~ 69 (814)
T 3mkq_A 10 SNRSDRVKGIDFHPTEPW-VLTTLYSGRVEIWNYETQVEVR-------------------SIQVTETPVRAGKFIARKNW 69 (814)
T ss_dssp EEECSCEEEEEECSSSSE-EEEEETTSEEEEEETTTTEEEE-------------------EEECCSSCEEEEEEEGGGTE
T ss_pred ecCCCceEEEEECCCCCE-EEEEeCCCEEEEEECCCCceEE-------------------EEecCCCcEEEEEEeCCCCE
Confidence 349999999999999995 9999999999999999988766 36789999999999999999
Q ss_pred EEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCC-cceeEeeccccCEE
Q 001248 435 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPVY 513 (1114)
Q Consensus 435 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~ 513 (1114)
|++|+.||.|+|||+.+++.+. .+.+|.+.|.+++|+|+++ ++++++.|++|++||+.++ .....+.+|...|.
T Consensus 70 l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~ 144 (814)
T 3mkq_A 70 IIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVM 144 (814)
T ss_dssp EEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEE
T ss_pred EEEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEE
Confidence 9999999999999999988665 6788999999999999999 7999999999999999987 66788899999999
Q ss_pred EEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecC--CCCEEEE
Q 001248 514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT--TKNRFLA 591 (1114)
Q Consensus 514 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~--~~~~l~~ 591 (1114)
+++|++. ++..+++++.||.|++||+.+......+..+. ...+..++|+| +++++++
T Consensus 145 ~~~~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~--------------------~~~v~~~~~~~~~~~~~l~~ 203 (814)
T 3mkq_A 145 CVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ--------------------ERGVNYVDYYPLPDKPYMIT 203 (814)
T ss_dssp EEEEETT-EEEEEEEEETTSEEEEEETTCSSCSEEEECCC--------------------TTCCCEEEECCSTTCCEEEE
T ss_pred EEEEEcC-CCCEEEEEeCCCeEEEEECCCCcceeEEecCC--------------------CCCEEEEEEEECCCCCEEEE
Confidence 9998762 45799999999999999998766555444332 12344455555 5668999
Q ss_pred EeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCC
Q 001248 592 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS 671 (1114)
Q Consensus 592 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1114)
++.||.|++||+.+++.+..+..+. ..|.+++|+|++.++++++.||.|++||..++ .....+.
T Consensus 204 ~~~dg~i~~~d~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~------------- 267 (814)
T 3mkq_A 204 ASDDLTIKIWDYQTKSCVATLEGHM--SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY-KVEKTLN------------- 267 (814)
T ss_dssp ECTTSEEEEEETTTTEEEEEEECCS--SCEEEEEECSSSSEEEEEETTSCEEEEETTTC-SEEEEEC-------------
T ss_pred EeCCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEee-------------
Confidence 9999999999999999998887664 47999999999999999999999999998776 2222221
Q ss_pred CCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccc
Q 001248 672 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRA 751 (1114)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 751 (1114)
.+.
T Consensus 268 -----------------------------------------------------------------------------~~~ 270 (814)
T 3mkq_A 268 -----------------------------------------------------------------------------VGL 270 (814)
T ss_dssp -----------------------------------------------------------------------------CSS
T ss_pred -----------------------------------------------------------------------------cCC
Confidence 145
Q ss_pred cceEEEEEccCccee-eecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCC
Q 001248 752 TKISRLIFTNSGNAI-LALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 830 (1114)
Q Consensus 752 ~~i~~l~~s~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~ 830 (1114)
..+.+++|+|++..+ ++.+.++.+.+|++. .....+.++|++
T Consensus 271 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~g 313 (814)
T 3mkq_A 271 ERSWCIATHPTGRKNYIASGFDNGFTVLSLG-------------------------------------NDEPTLSLDPVG 313 (814)
T ss_dssp SSEEEEEECTTCGGGEEEEEETTEEEEEECS-------------------------------------CCSCCEEECSSS
T ss_pred CcEEEEEEccCCCceEEEEEeCCCEEEEEcC-------------------------------------CCCceeEECCCC
Confidence 678999999998754 666667778888643 123457888999
Q ss_pred CEEEEEe-CC---eEE------EEEcCCCccc----cccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEE
Q 001248 831 SYVMSAS-GG---KIS------LFNMMTFKTM----ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 896 (1114)
Q Consensus 831 ~~l~~~~-dg---~i~------iwd~~~~~~~----~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~ 896 (1114)
+.+++++ +. .+. .|++..+... ..+..+...+.+++|+| +|++|++++ ||.+.+|++......
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~-~~~~~i~~~~~~~~~- 390 (814)
T 3mkq_A 314 KLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSP-NGRFVTVVG-DGEYVIYTALAWRNK- 390 (814)
T ss_dssp EEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECT-TSSEEEEEE-TTEEEEEETTTTEEE-
T ss_pred CEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECC-CCCEEEEec-CCEEEEEECcccccc-
Confidence 9998876 32 122 2333333322 22345667799999999 999999998 899999998755432
Q ss_pred eecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCC---cEEEE-EeC
Q 001248 897 KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ---IHFLV-VHE 972 (1114)
Q Consensus 897 ~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg---~~l~~-~~d 972 (1114)
+.+.|++++|+||+++|++++.|++|++|+.-. ++. ..+..++|+||| .+|++ +.|
T Consensus 391 ----~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~-------------~~~---~~v~~~~~s~dg~~~~~l~~~~~d 450 (814)
T 3mkq_A 391 ----AFGKCQDFVWGPDSNSYALIDETGQIKYYKNFK-------------EVT---SWSVPMHSAIDRLFSGALLGVKSD 450 (814)
T ss_dssp ----EEEECSEEEECTTSSCEEEECTTCCEEEEETTE-------------ECT---TCCCCCSSCCCEEECSSSEEEEET
T ss_pred ----CCCceEEEEEeCCCCeEEEEeCCCcEEEEECCC-------------Ccc---ceEEcCCcCccceecceEEEEecC
Confidence 456789999999999999999999999996432 111 256788899998 45555 799
Q ss_pred CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEE------EcCCeEEEE
Q 001248 973 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYAC------FLDATVCVF 1022 (1114)
Q Consensus 973 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~------s~Dg~I~vw 1022 (1114)
+.|++||+.+++.+..+. .|.. .++|+|||++|+++ +.++.+.+|
T Consensus 451 ~~v~~~d~~~~~~~~~~~--~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~ 501 (814)
T 3mkq_A 451 GFVYFFDWDNGTLVRRID--VNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLL 501 (814)
T ss_dssp TEEEEECTTTCCEEEEES--SCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEE
T ss_pred CEEEEEECCcCcEEEEEe--cCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEE
Confidence 999999999999988875 3343 99999999999999 555555444
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-43 Score=448.95 Aligned_cols=467 Identities=16% Similarity=0.209 Sum_probs=374.7
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw 494 (1114)
.+.+|.+.|.+++|||||++||+|+.||.|+|||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 8 ~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVF 82 (814)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEE
T ss_pred eeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEEE
Confidence 478899999999999999999999999999999999988666 6779999999999999999 79999999999999
Q ss_pred eCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCC-CCeeeecCCCCeeEEEEEecCCCeEEeeec
Q 001248 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFR 573 (1114)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~ 573 (1114)
|+.+++.+..+.+|.+.|.+++|++ ++.+|++++.||.|++||+.+. .....+..+...+.+++|+|+
T Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~--------- 151 (814)
T 3mkq_A 83 NYNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK--------- 151 (814)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETT---------
T ss_pred ECCCCcEEEEEecCCCCEEEEEEeC--CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcC---------
Confidence 9999999999999999999999865 4579999999999999999876 334455566666666666651
Q ss_pred ccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcC--CCCEEEEEeCCCcEEEEEccCCc
Q 001248 574 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK--DGCLLAVSTNDNGIKILATSDGI 651 (1114)
Q Consensus 574 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~~~~~dg~i~iwd~~~~~ 651 (1114)
+++.+++++.||.|++||+.++.....+..+. ...+.+++|+| ++.++++++.||.|++||..++
T Consensus 152 -----------~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~- 218 (814)
T 3mkq_A 152 -----------DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ-ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK- 218 (814)
T ss_dssp -----------EEEEEEEEETTSEEEEEETTCSSCSEEEECCC-TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT-
T ss_pred -----------CCCEEEEEeCCCeEEEEECCCCcceeEEecCC-CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC-
Confidence 33479999999999999999888877776543 24789999999 9999999999999999998776
Q ss_pred cceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEe
Q 001248 652 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL 731 (1114)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~ 731 (1114)
.....+.
T Consensus 219 ~~~~~~~------------------------------------------------------------------------- 225 (814)
T 3mkq_A 219 SCVATLE------------------------------------------------------------------------- 225 (814)
T ss_dssp EEEEEEE-------------------------------------------------------------------------
T ss_pred cEEEEEc-------------------------------------------------------------------------
Confidence 2222221
Q ss_pred ccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCcccccc
Q 001248 732 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND 811 (1114)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~ 811 (1114)
+|...|.+++|+|++..+++++.||.|++|++.. +.....
T Consensus 226 -----------------~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~----------------------~~~~~~- 265 (814)
T 3mkq_A 226 -----------------GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST----------------------YKVEKT- 265 (814)
T ss_dssp -----------------CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT----------------------CSEEEE-
T ss_pred -----------------CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC----------------------CcEEEE-
Confidence 2567899999999999999999999999998753 222211
Q ss_pred CCCCCCCCCccEEEEeeCCC--EEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCc---EE-
Q 001248 812 VTDSNPEEAVPCFALSKNDS--YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSS---IQ- 885 (1114)
Q Consensus 812 ~~~~~~~~~v~~v~~s~d~~--~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~---v~- 885 (1114)
+. .+...+.+++|+|+++ +++++.++.+.+|++.... ..++++| ++.++++++.+.. +.
T Consensus 266 ~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~-~g~~~~~~~~~~~~~~~~~ 330 (814)
T 3mkq_A 266 LN--VGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE------------PTLSLDP-VGKLVWSGGKNAAASDIFT 330 (814)
T ss_dssp EC--CSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCS------------CCEEECS-SSEEEEECCTTSCTTCEEE
T ss_pred ee--cCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCC------------ceeEECC-CCCEEEECcccccceeeee
Confidence 11 2677899999999998 5777779999999976532 3467888 8889988876653 11
Q ss_pred -----EEEcccceE----EEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCce
Q 001248 886 -----IYNVRVDEV----KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDT 956 (1114)
Q Consensus 886 -----iwd~~~~~~----~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 956 (1114)
.|++..+.. ...+..|...+.+++|+|+|++|++++ |+.+.+|++....... .+.+.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~~-------------~~~i~ 396 (814)
T 3mkq_A 331 AVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNKA-------------FGKCQ 396 (814)
T ss_dssp EECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEEE-------------EEECS
T ss_pred eecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccccccC-------------CCceE
Confidence 123333322 234566778899999999999999998 8999999986532111 13578
Q ss_pred EEEEccCCcEEEEE-eCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCC---CEEEEEEcCCeEEEEEcCCCeeeEE
Q 001248 957 RVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDS---QLVYACFLDATVCVFSAANLKLRCR 1032 (1114)
Q Consensus 957 ~v~fspdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg---~~l~s~s~Dg~I~vwd~~~~~~~~~ 1032 (1114)
+++|+|||++++++ .++.+++|+.. .+|...+.+++|+||| ++|++++.|+.|++||+.+++.+..
T Consensus 397 ~~~~spdg~~la~~~~~g~v~l~~~~----------~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~ 466 (814)
T 3mkq_A 397 DFVWGPDSNSYALIDETGQIKYYKNF----------KEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRR 466 (814)
T ss_dssp EEEECTTSSCEEEECTTCCEEEEETT----------EECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEE
T ss_pred EEEEeCCCCeEEEEeCCCcEEEEECC----------CCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEE
Confidence 99999999999995 78999999632 2567789999999999 6889999999999999999999988
Q ss_pred eCCCcccCCCCCCCCccceEEEecCCCCCeEEEE------eCCCcEEEEe
Q 001248 1033 INPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG------LSDGGVHVFE 1076 (1114)
Q Consensus 1033 ~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~------~~Dg~v~vW~ 1076 (1114)
+. +| .. .+.|+| |+++|+++ +.++.+.+|-
T Consensus 467 ~~-------~~----~~--~v~~s~-dg~~la~~~~~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 467 ID-------VN----AK--DVIWSD-NGELVMIVNTNSNGDEASGYTLLF 502 (814)
T ss_dssp ES-------SC----EE--EEEECT-TSSEEEEEECCCSSCSCSEEEEEE
T ss_pred Ee-------cC----CC--EEEEcC-CCCEEEEEEcCcccCCceEEEEEe
Confidence 77 21 11 689999 68999999 5555555543
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-43 Score=403.57 Aligned_cols=306 Identities=16% Similarity=0.311 Sum_probs=262.2
Q ss_pred eccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCC
Q 001248 354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 433 (1114)
Q Consensus 354 ~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 433 (1114)
..+|.+.|++++|+|+++ +|++|+.||+|+|||+.+++... .+.+|.+.|.+++|+|+|+
T Consensus 104 l~gh~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~-------------------~l~~h~~~V~~v~~~~~~~ 163 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFER-------------------TLKGHTDSVQDISFDHSGK 163 (410)
T ss_dssp EECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCE-------------------EECCCSSCEEEEEECTTSS
T ss_pred ecccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEE-------------------EEeccCCcEEEEEEcCCCC
Confidence 446999999999999999 49999999999999999987765 4789999999999999999
Q ss_pred eEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEE
Q 001248 434 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 513 (1114)
Q Consensus 434 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 513 (1114)
+|++|+.|++|+|||+.+++.+. ++.+|...|.+++|+|++. ++++|+.|++|++||+.++.++.++.+|...|.
T Consensus 164 ~l~sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~ 238 (410)
T 1vyh_C 164 LLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR 238 (410)
T ss_dssp EEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred EEEEEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEE
Confidence 99999999999999999987665 7889999999999999999 799999999999999999999999999999999
Q ss_pred EEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEe
Q 001248 514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 593 (1114)
Q Consensus 514 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 593 (1114)
+++++ +++.++++++.|+.|++||+.+......+..|...|.+++|+|++......... ..........+.++++|+
T Consensus 239 ~~~~~--~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~sgs 315 (410)
T 1vyh_C 239 MVRPN--QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT-GSETKKSGKPGPFLLSGS 315 (410)
T ss_dssp EEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCC-SCC-------CCEEEEEE
T ss_pred EEEEC--CCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhc-cccccccCCCCCEEEEEe
Confidence 99975 456899999999999999999998888899999999999999986521111110 111122334577899999
Q ss_pred CCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCC
Q 001248 594 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKP 673 (1114)
Q Consensus 594 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (1114)
.|+.|++||+.++.++..+.+|. ..|.+++|+|+|++|++++.||.|++||..++ +....+.
T Consensus 316 ~D~~i~iwd~~~~~~~~~~~~h~--~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~-~~~~~~~--------------- 377 (410)
T 1vyh_C 316 RDKTIKMWDVSTGMCLMTLVGHD--NWVRGVLFHSGGKFILSCADDKTLRVWDYKNK-RCMKTLN--------------- 377 (410)
T ss_dssp TTSEEEEEETTTTEEEEEEECCS--SCEEEEEECSSSSCEEEEETTTEEEEECCTTS-CCCEEEE---------------
T ss_pred CCCeEEEEECCCCceEEEEECCC--CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceEEEEc---------------
Confidence 99999999999999999988764 47999999999999999999999999998766 2222221
Q ss_pred CccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccc
Q 001248 674 TISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK 753 (1114)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 753 (1114)
+|...
T Consensus 378 ---------------------------------------------------------------------------~h~~~ 382 (410)
T 1vyh_C 378 ---------------------------------------------------------------------------AHEHF 382 (410)
T ss_dssp ---------------------------------------------------------------------------CCSSC
T ss_pred ---------------------------------------------------------------------------CCCCc
Confidence 26778
Q ss_pred eEEEEEccCcceeeecccCceEEEEee
Q 001248 754 ISRLIFTNSGNAILALASNAIHLLWKW 780 (1114)
Q Consensus 754 i~~l~~s~~~~~l~~~~~dg~i~vw~~ 780 (1114)
|.+++|+|++..|++++.||.|++|++
T Consensus 383 v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 383 VTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 999999999999999999999999975
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-39 Score=370.55 Aligned_cols=306 Identities=21% Similarity=0.350 Sum_probs=260.3
Q ss_pred ccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEe
Q 001248 416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495 (1114)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd 495 (1114)
+.+|.++|++++|+|++++|++|+.||+|+|||+.+++... .+.+|...|.+++|+|+++ +|++|+.|++|++||
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWD 178 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEE
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEe
Confidence 67899999999999999999999999999999999988665 7889999999999999999 899999999999999
Q ss_pred CCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeeccc
Q 001248 496 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 575 (1114)
Q Consensus 496 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~ 575 (1114)
+.+++++.++.+|...|.+++|++ ++.+|++++.|++|++||++++.....+..|...|..+.+++++.
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p--~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~--------- 247 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMP--NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT--------- 247 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS---------
T ss_pred CCCCceeEEEcCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCC---------
Confidence 999999999999999999999876 457999999999999999998887777777776666666665554
Q ss_pred ceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCcccee
Q 001248 576 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR 655 (1114)
Q Consensus 576 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~ 655 (1114)
++++++.|+.|++||+.+++....+..|. ..|.+++|+|++.+..
T Consensus 248 ------------~l~s~s~D~~v~vwd~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~--------------------- 292 (410)
T 1vyh_C 248 ------------LIASCSNDQTVRVWVVATKECKAELREHR--HVVECISWAPESSYSS--------------------- 292 (410)
T ss_dssp ------------EEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECCSCGGGG---------------------
T ss_pred ------------EEEEEcCCCeEEEEECCCCceeeEecCCC--ceEEEEEEcCcccccc---------------------
Confidence 79999999999999999988888776654 3677787777542100
Q ss_pred eccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCC
Q 001248 656 TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS 735 (1114)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~ 735 (1114)
+.
T Consensus 293 -~~----------------------------------------------------------------------------- 294 (410)
T 1vyh_C 293 -IS----------------------------------------------------------------------------- 294 (410)
T ss_dssp -GG-----------------------------------------------------------------------------
T ss_pred -hh-----------------------------------------------------------------------------
Confidence 00
Q ss_pred CCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCC
Q 001248 736 EPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDS 815 (1114)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~ 815 (1114)
...+
T Consensus 295 ----------------------------------~~~~------------------------------------------ 298 (410)
T 1vyh_C 295 ----------------------------------EATG------------------------------------------ 298 (410)
T ss_dssp ----------------------------------GCCS------------------------------------------
T ss_pred ----------------------------------hhcc------------------------------------------
Confidence 0000
Q ss_pred CCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceE
Q 001248 816 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV 894 (1114)
Q Consensus 816 ~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~ 894 (1114)
........++.+|++|+ |++|++||+.++.++..+.+|...|++++|+| ++++|++|+.||.|++||+.++++
T Consensus 299 -----~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~D~~i~vwd~~~~~~ 372 (410)
T 1vyh_C 299 -----SETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRC 372 (410)
T ss_dssp -----CC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCC
T ss_pred -----ccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCce
Confidence 00001123567888888 89999999999999999999999999999999 999999999999999999999999
Q ss_pred EEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001248 895 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 932 (1114)
Q Consensus 895 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~ 932 (1114)
+..+.+|...|++++|+|++.+|++|+.|++|++|++.
T Consensus 373 ~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 373 MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp CEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 99999999999999999999999999999999999863
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=351.58 Aligned_cols=288 Identities=18% Similarity=0.311 Sum_probs=238.8
Q ss_pred ccCCCCCeeEEEEcCC----CCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCE
Q 001248 416 VKDPGVSVNRVIWSPD----GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 491 (1114)
Q Consensus 416 ~~~h~~~V~~l~~spd----g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i 491 (1114)
+.+|.+.|++++|+|+ +++|++|+.|++|+|||+.+++.. ....+.+|...|.+++|++++. ++++++.|++|
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~-~~~~l~gh~~~v~~~~~~~~~~--~l~s~s~D~~i 104 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD-LQWSLEGHQLGVVSVDISHTLP--IAASSSLDAHI 104 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECSSSS--EEEEEETTSEE
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee-eeeeeccCCCCEEEEEECCCCC--EEEEEeCCCcE
Confidence 6789999999999985 679999999999999999876532 3346889999999999999999 79999999999
Q ss_pred EEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEee
Q 001248 492 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG 571 (1114)
Q Consensus 492 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~ 571 (1114)
++||+.+++.+..+..|...+.+++|++ ++++|+++
T Consensus 105 ~lWd~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~g------------------------------------------ 140 (321)
T 3ow8_A 105 RLWDLENGKQIKSIDAGPVDAWTLAFSP--DSQYLATG------------------------------------------ 140 (321)
T ss_dssp EEEETTTTEEEEEEECCTTCCCCEEECT--TSSEEEEE------------------------------------------
T ss_pred EEEECCCCCEEEEEeCCCccEEEEEECC--CCCEEEEE------------------------------------------
Confidence 9999999988888877766666555533 33444444
Q ss_pred ecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCc
Q 001248 572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI 651 (1114)
Q Consensus 572 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~ 651 (1114)
+.++.|++|++.+++....+..+. ..+.+++|+|+|++|++++.||.|++||+.++
T Consensus 141 ---------------------~~dg~v~i~~~~~~~~~~~~~~~~--~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~- 196 (321)
T 3ow8_A 141 ---------------------THVGKVNIFGVESGKKEYSLDTRG--KFILSIAYSPDGKYLASGAIDGIINIFDIATG- 196 (321)
T ss_dssp ---------------------CTTSEEEEEETTTCSEEEEEECSS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTT-
T ss_pred ---------------------cCCCcEEEEEcCCCceeEEecCCC--ceEEEEEECCCCCEEEEEcCCCeEEEEECCCC-
Confidence 445555555555555555554443 36889999999999999999999999998765
Q ss_pred cceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEe
Q 001248 652 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL 731 (1114)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~ 731 (1114)
+.+..+.
T Consensus 197 ~~~~~~~------------------------------------------------------------------------- 203 (321)
T 3ow8_A 197 KLLHTLE------------------------------------------------------------------------- 203 (321)
T ss_dssp EEEEEEC-------------------------------------------------------------------------
T ss_pred cEEEEEc-------------------------------------------------------------------------
Confidence 1111110
Q ss_pred ccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCcccccc
Q 001248 732 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND 811 (1114)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~ 811 (1114)
T Consensus 204 -------------------------------------------------------------------------------- 203 (321)
T 3ow8_A 204 -------------------------------------------------------------------------------- 203 (321)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcc
Q 001248 812 VTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 890 (1114)
Q Consensus 812 ~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~ 890 (1114)
+|...|.+++|+|++++|++++ |++|++||+.+++....+.+|...|.+++|+| ++.+|++|+.||+|++||+.
T Consensus 204 ----~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~s~s~D~~v~iwd~~ 278 (321)
T 3ow8_A 204 ----GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP-DDTHFVSSSSDKSVKVWDVG 278 (321)
T ss_dssp ----CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETT
T ss_pred ----ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCC
Confidence 1666788899999999999998 89999999999999999999999999999999 89999999999999999999
Q ss_pred cceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001248 891 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 932 (1114)
Q Consensus 891 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~ 932 (1114)
+++++..+.+|.+.|++++|+|++++|++++.|++|++||..
T Consensus 279 ~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 279 TRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999999999999999999999999999999999999999963
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-38 Score=353.03 Aligned_cols=295 Identities=18% Similarity=0.284 Sum_probs=254.1
Q ss_pred eeEec-cCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEc
Q 001248 351 VTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 429 (1114)
Q Consensus 351 ~~~~~-~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 429 (1114)
..+.+ +|.+.|+|++|+||+++ |++|+.||+|+|||..+++.... +..|...|.+++|+
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d~~~-l~s~s~Dg~v~vWd~~~~~~~~~-------------------~~~~~~~v~~~~~s 115 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKDKRR-IVSSSQDGKVIVWDSFTTNKEHA-------------------VTMPCTWVMACAYA 115 (354)
T ss_dssp EEEEEECCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTCCEEEE-------------------EECSSSCCCEEEEC
T ss_pred EEEEecCCCCeEEEEEECCCCCE-EEEEeCCCeEEEEECCCCCcceE-------------------EecCCCCEEEEEEC
Confidence 33444 59999999999999995 99999999999999998877652 56688899999999
Q ss_pred CCCCeEEEEeCCCeEEEEEccCCce---eeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEee
Q 001248 430 PDGSLFGVAYSRHIVQIYSYHGGDE---VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 506 (1114)
Q Consensus 430 pdg~~las~~~dg~i~iwd~~~~~~---~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 506 (1114)
|+|++||+|+.|+.+++|++..... ......+.+|...|.+++|+|++. .+++++.|++|++||+++++++.++.
T Consensus 116 p~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~~~~ 193 (354)
T 2pbi_B 116 PSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQSFH 193 (354)
T ss_dssp TTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEEEEc
Confidence 9999999999999999999875421 122335778999999999999999 79999999999999999999999999
Q ss_pred ccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCC
Q 001248 507 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 586 (1114)
Q Consensus 507 ~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~ 586 (1114)
+|...|.+++|++++++.+|++|+.||.|++||+++......+..|...|.+++|+|++.
T Consensus 194 ~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~-------------------- 253 (354)
T 2pbi_B 194 GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGD-------------------- 253 (354)
T ss_dssp CCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS--------------------
T ss_pred CCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCC--------------------
Confidence 999999999999888888999999999999999999887777777777777766666654
Q ss_pred CEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeecccccccccc
Q 001248 587 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASR 666 (1114)
Q Consensus 587 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 666 (1114)
++++++.|++|++||+++++.+..+..+.....+.+++|+|+|.+|++++.|+.|++||+.++. .+..+
T Consensus 254 -~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~-~~~~l--------- 322 (354)
T 2pbi_B 254 -AFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS-RVSIL--------- 322 (354)
T ss_dssp -EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS-EEEEE---------
T ss_pred -EEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc-eEEEE---------
Confidence 7999999999999999998888777655544567899999999999999999999999987762 22222
Q ss_pred CCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccC
Q 001248 667 TSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLP 746 (1114)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~ 746 (1114)
T Consensus 323 -------------------------------------------------------------------------------- 322 (354)
T 2pbi_B 323 -------------------------------------------------------------------------------- 322 (354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccceEEEEEccCcceeeecccCceEEEEe
Q 001248 747 ENLRATKISRLIFTNSGNAILALASNAIHLLWK 779 (1114)
Q Consensus 747 ~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~ 779 (1114)
.+|...|.+++|+|+|++|++++.|+.|+||+
T Consensus 323 -~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 323 -FGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp -CCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred -ECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 12778899999999999999999999999995
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-38 Score=350.76 Aligned_cols=292 Identities=20% Similarity=0.320 Sum_probs=251.8
Q ss_pred eeEec-cCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEc
Q 001248 351 VTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 429 (1114)
Q Consensus 351 ~~~~~-~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 429 (1114)
....+ +|.+.|++++|+|||++ |++|+.||+|+|||+.+++.+. .+..|...|.+++|+
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~~-l~s~s~Dg~v~iWd~~~~~~~~-------------------~~~~~~~~v~~~~~s 106 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSRL-LLSASQDGKLIIWDSYTTNKVH-------------------AIPLRSSWVMTCAYA 106 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSE-EEEEETTTEEEEEETTTCCEEE-------------------EEECSSSCEEEEEEC
T ss_pred hheeecCCCCceEEEEECCCCCE-EEEEeCCCcEEEEECCCCCcce-------------------EeecCCccEEEEEEC
Confidence 34444 59999999999999995 9999999999999999988765 366789999999999
Q ss_pred CCCCeEEEEeCCCeEEEEEccCCce-eeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeecc
Q 001248 430 PDGSLFGVAYSRHIVQIYSYHGGDE-VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH 508 (1114)
Q Consensus 430 pdg~~las~~~dg~i~iwd~~~~~~-~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h 508 (1114)
|+|++|++|+.|+.|++|++.+++. ......+.+|.+.|.++.|++++. +++++.|++|++||+.+++.+.++.+|
T Consensus 107 ~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~~~h 183 (340)
T 1got_B 107 PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTFTGH 183 (340)
T ss_dssp TTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred CCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEEcCC
Confidence 9999999999999999999987642 233346789999999999998875 889999999999999999999999999
Q ss_pred ccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCE
Q 001248 509 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 588 (1114)
Q Consensus 509 ~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~ 588 (1114)
.+.|.+++|++ ++.++++|+.|+.|++||+++......+..|...|.+++|+|++. +
T Consensus 184 ~~~v~~~~~~~--~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~---------------------~ 240 (340)
T 1got_B 184 TGDVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN---------------------A 240 (340)
T ss_dssp SSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSS---------------------E
T ss_pred CCceEEEEECC--CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCC---------------------E
Confidence 99999999865 557999999999999999998877777777777676666666654 7
Q ss_pred EEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCC
Q 001248 589 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTS 668 (1114)
Q Consensus 589 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 668 (1114)
|++++.|+.|++||+++++.+..+..+.....|.+++|+|+|++|++|+.||.|++||+.++ .....+
T Consensus 241 l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~-~~~~~~----------- 308 (340)
T 1got_B 241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA-DRAGVL----------- 308 (340)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEEE-----------
T ss_pred EEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC-cEeeEe-----------
Confidence 99999999999999999988888765554557899999999999999999999999998766 222222
Q ss_pred CCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCcc
Q 001248 669 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN 748 (1114)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~ 748 (1114)
.
T Consensus 309 -------------------------------------------------------------------------------~ 309 (340)
T 1got_B 309 -------------------------------------------------------------------------------A 309 (340)
T ss_dssp -------------------------------------------------------------------------------E
T ss_pred -------------------------------------------------------------------------------e
Confidence 1
Q ss_pred ccccceEEEEEccCcceeeecccCceEEEEe
Q 001248 749 LRATKISRLIFTNSGNAILALASNAIHLLWK 779 (1114)
Q Consensus 749 ~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~ 779 (1114)
+|...|.+++|+|++..|++++.|+.|+||+
T Consensus 310 ~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 310 GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred cCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 2778899999999999999999999999995
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-38 Score=363.87 Aligned_cols=339 Identities=15% Similarity=0.203 Sum_probs=272.1
Q ss_pred cCCCCCeeEEEEcCCCC-eEEEEeCCCeEEEEEc----cCCce------eeee-Eeec------cccCCeeEEEecCCCC
Q 001248 417 KDPGVSVNRVIWSPDGS-LFGVAYSRHIVQIYSY----HGGDE------VRQH-LEID------AHVGGVNDIAFSHPNK 478 (1114)
Q Consensus 417 ~~h~~~V~~l~~spdg~-~las~~~dg~i~iwd~----~~~~~------~~~~-~~l~------~h~~~V~~v~~s~d~~ 478 (1114)
..|.+.|.+++|+|+|+ +||+|+.||.|++||+ .+++. .... ..+. +|...|.+++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 45668999999999999 9999999999999999 87772 2211 1111 2688999999999999
Q ss_pred eeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCe---
Q 001248 479 QLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW--- 555 (1114)
Q Consensus 479 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~--- 555 (1114)
+|++++.|+.|++|| .+++.+..+.+|...|.+++|++ ++.+|++++.|+.|++||+.+......+..+...
T Consensus 122 --~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 196 (425)
T 1r5m_A 122 --SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNK--DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSS 196 (425)
T ss_dssp --EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECT--TSSEEEEEETTCCEEEEETTTTEEEEEECCC------
T ss_pred --EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECC--CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccc
Confidence 799999999999999 78888999999999999999865 5579999999999999999987777666655443
Q ss_pred eEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEE
Q 001248 556 CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV 635 (1114)
Q Consensus 556 v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 635 (1114)
+....+.+++. .+..+.|+++ ..+++++.++.|++||+.+++.+..+..+ ...|.+++|+|++++|++
T Consensus 197 ~~~~~~~~~~~---------~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~ 264 (425)
T 1r5m_A 197 INAENHSGDGS---------LGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGH--HGPISVLEFNDTNKLLLS 264 (425)
T ss_dssp ---------CC---------CBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCC--SSCEEEEEEETTTTEEEE
T ss_pred eeeccccCCcc---------eeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccC--CCceEEEEECCCCCEEEE
Confidence 11111111111 2444555554 34889999999999999999988888765 447999999999999999
Q ss_pred EeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCc
Q 001248 636 STNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVK 715 (1114)
Q Consensus 636 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1114)
++.||.|++||+.++. ....+
T Consensus 265 ~~~d~~i~i~d~~~~~-~~~~~---------------------------------------------------------- 285 (425)
T 1r5m_A 265 ASDDGTLRIWHGGNGN-SQNCF---------------------------------------------------------- 285 (425)
T ss_dssp EETTSCEEEECSSSBS-CSEEE----------------------------------------------------------
T ss_pred EcCCCEEEEEECCCCc-cceEe----------------------------------------------------------
Confidence 9999999999876541 11000
Q ss_pred ccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccc
Q 001248 716 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASV 795 (1114)
Q Consensus 716 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 795 (1114)
T Consensus 286 -------------------------------------------------------------------------------- 285 (425)
T 1r5m_A 286 -------------------------------------------------------------------------------- 285 (425)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcE
Q 001248 796 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI 874 (1114)
Q Consensus 796 ~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~ 874 (1114)
. .|...|.+++|+|++ ++++++ |+.|++||+.+++.+..+..|...|.+++|+| ++++
T Consensus 286 -----------------~--~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~-~~~~ 344 (425)
T 1r5m_A 286 -----------------Y--GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ-DGQK 344 (425)
T ss_dssp -----------------C--CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECT-TSSE
T ss_pred -----------------c--CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcC-CCCE
Confidence 0 155667788888888 777777 89999999998888888888999999999999 8999
Q ss_pred EEEEeCCCcEEEEEcccce--------------------EEEeeccccc--CeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001248 875 IAIGMDDSSIQIYNVRVDE--------------------VKSKLKGHSK--RITGLAFSHALNVLVSSGADSQLCVWSSD 932 (1114)
Q Consensus 875 la~g~~dg~v~iwd~~~~~--------------------~~~~l~~h~~--~V~~l~~s~d~~~l~s~s~D~~v~iwd~~ 932 (1114)
|++++.||.|++||+.+++ .+..+.+|.. .|++++|+|++++|++++.||.|++|+++
T Consensus 345 l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 345 YAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred EEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 9999999999999999988 8899999977 99999999999999999999999999986
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=342.76 Aligned_cols=288 Identities=15% Similarity=0.216 Sum_probs=248.9
Q ss_pred eccCCCCceEEEEcCC----CCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEc
Q 001248 354 TLNQGSSPMSMDFHPV----QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 429 (1114)
Q Consensus 354 ~~~h~~~v~~v~~spd----g~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 429 (1114)
..+|.+.|++++|+|+ ++ +|+||+.|++|+|||+.+++..... .+.+|...|.+++|+
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~-~l~tgs~D~~v~vW~~~~~~~~~~~-----------------~l~gh~~~v~~~~~~ 89 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSE-TVVTGSLDDLVKVWKWRDERLDLQW-----------------SLEGHQLGVVSVDIS 89 (321)
T ss_dssp TTSSSSCEEEEEEC-------C-EEEEEETTSCEEEEEEETTEEEEEE-----------------EECCCSSCEEEEEEC
T ss_pred cccCCCcEEEEEEecCCCCCCC-EEEEEcCCCCEEEEECCCCCeeeee-----------------eeccCCCCEEEEEEC
Confidence 3359999999999985 45 5999999999999999876543211 368999999999999
Q ss_pred CCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccc
Q 001248 430 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE 509 (1114)
Q Consensus 430 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~ 509 (1114)
|++.++++++.|++|++||+.+++.+. .+..|...+.+++|+|+++ +|++|+.|+.|++||+++++....+..|.
T Consensus 90 ~~~~~l~s~s~D~~i~lWd~~~~~~~~---~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~~~~~~~~~~~~~~~~ 164 (321)
T 3ow8_A 90 HTLPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGKKEYSLDTRG 164 (321)
T ss_dssp SSSSEEEEEETTSEEEEEETTTTEEEE---EEECCTTCCCCEEECTTSS--EEEEECTTSEEEEEETTTCSEEEEEECSS
T ss_pred CCCCEEEEEeCCCcEEEEECCCCCEEE---EEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEEEcCCCceeEEecCCC
Confidence 999999999999999999999998766 6778889999999999999 79999999999999999999999999999
Q ss_pred cCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEE
Q 001248 510 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 589 (1114)
Q Consensus 510 ~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l 589 (1114)
..|.+++|++ ++++|++++.|+.|++||+++.+....+..|...|.+++|+|+++ +|
T Consensus 165 ~~v~~~~~sp--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~---------------------~l 221 (321)
T 3ow8_A 165 KFILSIAYSP--DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ---------------------LL 221 (321)
T ss_dssp SCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSC---------------------EE
T ss_pred ceEEEEEECC--CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCC---------------------EE
Confidence 9999999865 568999999999999999998877777777776666666666554 79
Q ss_pred EEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCC
Q 001248 590 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE 669 (1114)
Q Consensus 590 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 669 (1114)
++++.|+.|++||+.+++.+..+..| ...|.+++|+|++.+|++++.|++|++||+.++ ..+..+.
T Consensus 222 ~s~s~dg~i~iwd~~~~~~~~~~~~h--~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~----------- 287 (321)
T 3ow8_A 222 VTASDDGYIKIYDVQHANLAGTLSGH--ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR-TCVHTFF----------- 287 (321)
T ss_dssp EEECTTSCEEEEETTTCCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEEC-----------
T ss_pred EEEcCCCeEEEEECCCcceeEEEcCC--CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-EEEEEEc-----------
Confidence 99999999999999999999888766 447999999999999999999999999999877 3333321
Q ss_pred CCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccc
Q 001248 670 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL 749 (1114)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~ 749 (1114)
+
T Consensus 288 -------------------------------------------------------------------------------~ 288 (321)
T 3ow8_A 288 -------------------------------------------------------------------------------D 288 (321)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred -------------------------------------------------------------------------------C
Confidence 2
Q ss_pred cccceEEEEEccCcceeeecccCceEEEEee
Q 001248 750 RATKISRLIFTNSGNAILALASNAIHLLWKW 780 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~ 780 (1114)
|...|.+++|+|+++.|++++.||.|++||.
T Consensus 289 h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 289 HQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 6678999999999999999999999999985
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-38 Score=358.56 Aligned_cols=293 Identities=17% Similarity=0.257 Sum_probs=231.3
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw 494 (1114)
.+.+|.+.|++++|+|++++|++|+.|++|+|||+.+++... .+.+|...|.+++|+|+|+ ++++|+.|+.|++|
T Consensus 61 ~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~---~~~~h~~~v~~~~~s~~g~--~las~~~d~~v~iw 135 (380)
T 3iz6_a 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH---AIKLHCPWVMECAFAPNGQ--SVACGGLDSACSIF 135 (380)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE---EEECCCTTCCCCEECTTSS--EEEECCSSSCCEEE
T ss_pred cccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce---EEecCCCCEEEEEECCCCC--EEEEeeCCCcEEEE
Confidence 488999999999999999999999999999999999987665 6889999999999999999 79999999999999
Q ss_pred eCCCCc-------ceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCe
Q 001248 495 DATNGA-------KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 567 (1114)
Q Consensus 495 d~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 567 (1114)
|+.+.. ....+.+|.+.|.++.|.+..+ ..|++|+.|++|++||+.+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~-~~l~s~s~D~~i~~wd~~~------------------------- 189 (380)
T 3iz6_a 136 NLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQE-TRLITGSGDQTCVLWDVTT------------------------- 189 (380)
T ss_dssp ECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSS-SCEEEECTTSCEEEECTTT-------------------------
T ss_pred ECCCCccccCCccceeeccCCCcceEEEEEecCCC-CEEEEECCCCcEEEEEcCC-------------------------
Confidence 987532 3345677777777777655432 3466666666666665543
Q ss_pred EEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEecc---CCCCCCcCeEEEcC-CCCEEEEEeCCCcEE
Q 001248 568 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA---DGGLPASPRIRFNK-DGCLLAVSTNDNGIK 643 (1114)
Q Consensus 568 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~~~~s~-d~~~l~~~~~dg~i~ 643 (1114)
++.+..+.. .++...|.+++|++ ++.++++|+.|++|+
T Consensus 190 --------------------------------------~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~ 231 (380)
T 3iz6_a 190 --------------------------------------GQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVR 231 (380)
T ss_dssp --------------------------------------CCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEE
T ss_pred --------------------------------------CcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEE
Confidence 333333311 23345788999987 889999999999999
Q ss_pred EEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCC
Q 001248 644 ILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESN 723 (1114)
Q Consensus 644 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 723 (1114)
+||+.........+
T Consensus 232 ~wd~~~~~~~~~~~------------------------------------------------------------------ 245 (380)
T 3iz6_a 232 LWDLRITSRAVRTY------------------------------------------------------------------ 245 (380)
T ss_dssp EEETTTTCCCCEEE------------------------------------------------------------------
T ss_pred EEECCCCCcceEEE------------------------------------------------------------------
Confidence 99986431111111
Q ss_pred CceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCC
Q 001248 724 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP 803 (1114)
Q Consensus 724 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~ 803 (1114)
T Consensus 246 -------------------------------------------------------------------------------- 245 (380)
T 3iz6_a 246 -------------------------------------------------------------------------------- 245 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCC-------CCCeEEEEEecCCCcEE
Q 001248 804 SGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP-------PPAATFLAFHPQDNNII 875 (1114)
Q Consensus 804 ~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~-------~~~i~~l~~sp~d~~~l 875 (1114)
. +|...|.+++|+|++++|++++ ||+|++||+.+++.+..+..+ ...|++++|+| ++++|
T Consensus 246 ---------~--~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l 313 (380)
T 3iz6_a 246 ---------H--GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSI-SGRLL 313 (380)
T ss_dssp ---------C--CCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECS-SSSEE
T ss_pred ---------C--CcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECC-CCCEE
Confidence 0 1566677777777777777777 777888887777666555433 23489999999 99999
Q ss_pred EEEeCCCcEEEEEcccceEEEee----cccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 001248 876 AIGMDDSSIQIYNVRVDEVKSKL----KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 934 (1114)
Q Consensus 876 a~g~~dg~v~iwd~~~~~~~~~l----~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~ 934 (1114)
++|+.||.|++||+.+++.+..+ .+|.+.|++++|+|||++|+||+.|++|+||++...
T Consensus 314 ~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 314 FAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp EEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred EEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 99999999999999998887776 689999999999999999999999999999999874
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-37 Score=340.13 Aligned_cols=302 Identities=20% Similarity=0.273 Sum_probs=246.4
Q ss_pred Eec-cCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCC
Q 001248 353 RTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 431 (1114)
Q Consensus 353 ~~~-~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd 431 (1114)
.++ +|.+.|++++|+|++..+|++|+.|++|++||+.+........ ...+.+|...|.+++|+||
T Consensus 11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~--------------~~~~~~h~~~v~~~~~s~d 76 (319)
T 3frx_A 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVP--------------VRSFKGHSHIVQDCTLTAD 76 (319)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEE--------------EEEEECCSSCEEEEEECTT
T ss_pred EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcccccc--------------ceEEeCCcccEEEEEECCC
Confidence 344 4999999999999874479999999999999987543221111 1147899999999999999
Q ss_pred CCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccC
Q 001248 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 511 (1114)
Q Consensus 432 g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 511 (1114)
|++|++|+.|++|+|||+.+++.+. .+.+|...|.+++|+|++. ++++|+.|++|++||++ ++++.++.+|...
T Consensus 77 g~~l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~ 150 (319)
T 3frx_A 77 GAYALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIK-GQCLATLLGHNDW 150 (319)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETT-SCEEEEECCCSSC
T ss_pred CCEEEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECC-CCeEEEEeccCCc
Confidence 9999999999999999999998765 6889999999999999999 79999999999999985 6678889999999
Q ss_pred EEEEeeccCC----CceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCC
Q 001248 512 VYSVCPHHKE----NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 587 (1114)
Q Consensus 512 v~~~~~~~~~----~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~ 587 (1114)
|.++++.+.. ++.++++++.|+.|++||+++......+..|...|.+++|+|+|+
T Consensus 151 v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~--------------------- 209 (319)
T 3frx_A 151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT--------------------- 209 (319)
T ss_dssp EEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSS---------------------
T ss_pred EEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCC---------------------
Confidence 9999987643 445899999999999999988776666777777666666666655
Q ss_pred EEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccC
Q 001248 588 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT 667 (1114)
Q Consensus 588 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 667 (1114)
+|++++.||.|++||+.+++.+..+..+ ..+.+++|+|++.++++++.+ .+++|++... .....+..+...
T Consensus 210 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~-~~~~~~~~~~~~---- 280 (319)
T 3frx_A 210 LIASAGKDGEIMLWNLAAKKAMYTLSAQ---DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQ-YLVDDLRPEFAG---- 280 (319)
T ss_dssp EEEEEETTCEEEEEETTTTEEEEEEECC---SCEEEEEECSSSSEEEEEETT-EEEEEEETTE-EEEEEECCCCTT----
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCC---CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcC-eeeeccCccccc----
Confidence 7999999999999999999999888754 368999999999999988764 5999998765 222222111000
Q ss_pred CCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCc
Q 001248 668 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE 747 (1114)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~ 747 (1114)
..
T Consensus 281 ------------------------------------------------------------------------------~~ 282 (319)
T 3frx_A 281 ------------------------------------------------------------------------------YS 282 (319)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred ------------------------------------------------------------------------------cc
Confidence 00
Q ss_pred cccccceEEEEEccCcceeeecccCceEEEEeecc
Q 001248 748 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQR 782 (1114)
Q Consensus 748 ~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~ 782 (1114)
..+...+.+++|+|+|++|++++.||.|+||++.+
T Consensus 283 ~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 283 KAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp GGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred cCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 12556789999999999999999999999999753
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-37 Score=344.83 Aligned_cols=286 Identities=14% Similarity=0.260 Sum_probs=240.7
Q ss_pred eEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEE
Q 001248 458 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 537 (1114)
Q Consensus 458 ~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~ 537 (1114)
..++.+|.+.|.+++|+|+++ +|++|+.|++|++||+.+++.+..+..|...|.+++|++ ++.++++++.|+.|++
T Consensus 48 ~~~l~gH~~~v~~~~~s~d~~--~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~s~~~d~~v~i 123 (340)
T 1got_B 48 RRTLRGHLAKIYAMHWGTDSR--LLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP--SGNYVACGGLDNICSI 123 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSS--EEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECT--TSSEEEEEETTCEEEE
T ss_pred heeecCCCCceEEEEECCCCC--EEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECC--CCCEEEEEeCCCeEEE
Confidence 347889999999999999999 899999999999999999999999999999999999865 5589999999999999
Q ss_pred EEcCCCCC----eeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEec
Q 001248 538 WLYDNLGS----RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID 613 (1114)
Q Consensus 538 wd~~~~~~----~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 613 (1114)
|++.+... ...+..|...+.++.|++++. +++++.|+.|++||+.+++.+..+.
T Consensus 124 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~----------------------l~s~s~d~~i~~wd~~~~~~~~~~~ 181 (340)
T 1got_B 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ----------------------IVTSSGDTTCALWDIETGQQTTTFT 181 (340)
T ss_dssp EETTTCSBSCEEEEEEECCSSCEEEEEEEETTE----------------------EEEEETTSCEEEEETTTTEEEEEEC
T ss_pred EECccCCCcceeEEEecCCCccEEEEEECCCCc----------------------EEEEECCCcEEEEECCCCcEEEEEc
Confidence 99987542 223445555566655555543 8999999999999999999999888
Q ss_pred cCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhcccccccc
Q 001248 614 ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLAD 693 (1114)
Q Consensus 614 ~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1114)
.| ...|.+++|+|+++++++|+.||.|++||+.++ .....+.
T Consensus 182 ~h--~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~-~~~~~~~----------------------------------- 223 (340)
T 1got_B 182 GH--TGDVMSLSLAPDTRLFVSGACDASAKLWDVREG-MCRQTFT----------------------------------- 223 (340)
T ss_dssp CC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-SEEEEEC-----------------------------------
T ss_pred CC--CCceEEEEECCCCCEEEEEeCCCcEEEEECCCC-eeEEEEc-----------------------------------
Confidence 66 447999999999999999999999999998765 1111110
Q ss_pred ccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCc
Q 001248 694 RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNA 773 (1114)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg 773 (1114)
T Consensus 224 -------------------------------------------------------------------------------- 223 (340)
T 1got_B 224 -------------------------------------------------------------------------------- 223 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccc
Q 001248 774 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM 852 (1114)
Q Consensus 774 ~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~ 852 (1114)
+|...|.+++|+|++++|++++ ||+|++||+.+++.+
T Consensus 224 ------------------------------------------~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~ 261 (340)
T 1got_B 224 ------------------------------------------GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL 261 (340)
T ss_dssp ------------------------------------------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred ------------------------------------------CCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEE
Confidence 1555677777777777777777 778888887776665
Q ss_pred cccC--CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 001248 853 ATFM--PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930 (1114)
Q Consensus 853 ~~~~--~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd 930 (1114)
..+. .+...|++++|+| ++++|++|+.||.|++||+.+++.+..+.+|.+.|++++|+|||.+|+||+.|++|+|||
T Consensus 262 ~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 262 MTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEECCTTCCSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEccCCcccceEEEEECC-CCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 5554 2335799999999 999999999999999999999999999999999999999999999999999999999996
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-38 Score=350.85 Aligned_cols=319 Identities=15% Similarity=0.196 Sum_probs=229.3
Q ss_pred ccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccc
Q 001248 716 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASV 795 (1114)
Q Consensus 716 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 795 (1114)
.++.++.+.....|++..... ..|...|.+++|+|||++|++++.|.. ++||-
T Consensus 18 ~~~~~~g~~~~~~w~~p~~~p-----------~~H~~~V~~v~fSpDG~~las~s~d~~-~~wd~--------------- 70 (357)
T 4g56_B 18 LYFQSNGSSKGSAWGRPVTAP-----------ACMEVQIGAVRYRRDGALLLAASSLSS-RTWGG--------------- 70 (357)
T ss_dssp ---------------------------------CCCSEEEEEEECSSSCEEEEEECSSS-SSCCE---------------
T ss_pred eEEecCCCccccccCCCCCCc-----------ccccCCEEEEEECCCCCEEEEEcCCCC-ccccC---------------
Confidence 344555567778888753211 248899999999999999999988421 33321
Q ss_pred cccccCCCCCcccccc-CCCCCCCCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccc----cCCCCCCeEEEEEecC
Q 001248 796 APQLWQPPSGIMMTND-VTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMAT----FMPPPPAATFLAFHPQ 870 (1114)
Q Consensus 796 ~~~~w~~~~g~~~~~~-~~~~~~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~----~~~~~~~i~~l~~sp~ 870 (1114)
.+.+|+..++...... ....+|...|.+++|+|++++++++.||+|+|||+.+++.... ..+|...|++++|+|
T Consensus 71 ~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp- 149 (357)
T 4g56_B 71 SIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS- 149 (357)
T ss_dssp EEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-
T ss_pred eEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-
Confidence 1223333333321111 1112378889999999999877766699999999988765533 347899999999999
Q ss_pred CCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCccccccccccCCCCC
Q 001248 871 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT 949 (1114)
Q Consensus 871 d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~ 949 (1114)
++++|++|+.||.|++||+.+++.+..+.+|...|++++|++++. ++++++.|++|++||+.+++...... ...+
T Consensus 150 dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~---~~~~- 225 (357)
T 4g56_B 150 DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRID---FCAS- 225 (357)
T ss_dssp SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCC---CTTC-
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeee---eccc-
Confidence 999999999999999999999999999999999999999999875 78999999999999998865432211 1111
Q ss_pred CCCCCceEEEEccCC-cEEEE-EeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCC-CEEEEEEcCCeEEEEEcCC
Q 001248 950 PTAQSDTRVQFHQDQ-IHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDS-QLVYACFLDATVCVFSAAN 1026 (1114)
Q Consensus 950 ~~~~~i~~v~fspdg-~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~s~Dg~I~vwd~~~ 1026 (1114)
...+.+++|+|++ .+|++ +.|+.|++||+.+++++..+. +|...|++++|+|++ ++|++|+.||+|+|||+.+
T Consensus 226 --~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~--~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~ 301 (357)
T 4g56_B 226 --DTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA--VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF 301 (357)
T ss_dssp --CSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC--CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS
T ss_pred --cccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe--ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC
Confidence 1468999999985 57777 578999999999999988876 789999999999987 5799999999999999999
Q ss_pred CeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1027 LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1027 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
++.+..+ +|.. .|. +++|+|.|+.+|++|+.||+|++|++.+..
T Consensus 302 ~~~~~~~--------~H~~-~V~--~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 302 SEVFRDL--------SHRD-FVT--GVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp CEEEEEC--------CCSS-CEE--EEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred CcEeEEC--------CCCC-CEE--EEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 9887654 2323 255 899999789999999999999999997654
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-37 Score=336.36 Aligned_cols=251 Identities=22% Similarity=0.358 Sum_probs=216.3
Q ss_pred Eecc-CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCC
Q 001248 353 RTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 431 (1114)
Q Consensus 353 ~~~~-h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd 431 (1114)
+++. |.+.|++++|+|+|++ |++|+.||+|+|||+.+++.+. .+.+|...|.+++|+|+
T Consensus 7 ~~~~~h~~~V~~~~fsp~~~~-l~s~~~dg~v~lWd~~~~~~~~-------------------~~~~~~~~v~~~~~~~~ 66 (304)
T 2ynn_A 7 KTFSNRSDRVKGIDFHPTEPW-VLTTLYSGRVELWNYETQVEVR-------------------SIQVTETPVRAGKFIAR 66 (304)
T ss_dssp EEEEEECSCEEEEEECSSSSE-EEEEETTSEEEEEETTTTEEEE-------------------EEECCSSCEEEEEEEGG
T ss_pred EeecCCCCceEEEEECCCCCE-EEEEcCCCcEEEEECCCCceeE-------------------EeeccCCcEEEEEEeCC
Confidence 4444 9999999999999995 9999999999999999987765 36789999999999999
Q ss_pred CCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCC-cceeEeecccc
Q 001248 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEA 510 (1114)
Q Consensus 432 g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~ 510 (1114)
+++|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ ++++|+.|++|++||++++ .....+.+|..
T Consensus 67 ~~~l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~ 141 (304)
T 2ynn_A 67 KNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEH 141 (304)
T ss_dssp GTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECCCCS
T ss_pred CCEEEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhcccCC
Confidence 9999999999999999999998765 6889999999999999999 7999999999999999987 44567899999
Q ss_pred CEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecC-CCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEE
Q 001248 511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA-PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 589 (1114)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l 589 (1114)
.|.+++|++. ++.+|++|+.|++|++||+........+.. +...+..+.+.+. +++.++
T Consensus 142 ~v~~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-------------------~~~~~l 201 (304)
T 2ynn_A 142 FVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL-------------------PDKPYM 201 (304)
T ss_dssp CEEEEEECTT-CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCS-------------------TTCCEE
T ss_pred cEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEc-------------------CCCCEE
Confidence 9999999763 347999999999999999987655544332 2234444444331 245689
Q ss_pred EEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 590 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 590 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
++++.|+.|++||+.+++++..+.+|. ..|.+++|+|++.+|++++.||+|++||..++
T Consensus 202 ~s~s~D~~i~iWd~~~~~~~~~~~~h~--~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~ 260 (304)
T 2ynn_A 202 ITASDDLTIKIWDYQTKSCVATLEGHM--SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260 (304)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCS--SCEEEEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred EEEcCCCeEEEEeCCCCccceeeCCCC--CCEEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 999999999999999999999998764 47999999999999999999999999999877
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-37 Score=346.93 Aligned_cols=295 Identities=15% Similarity=0.155 Sum_probs=229.4
Q ss_pred cccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCc-cccccCCCCCCCCCccEEEEee
Q 001248 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI-MMTNDVTDSNPEEAVPCFALSK 828 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~-~~~~~~~~~~~~~~v~~v~~s~ 828 (1114)
+...|.+++|+|||++|++++ |+++++|+.... +|+..... ..........+...|.+++|++
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 92 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSLW---------------LFKDPCAAPNEGFCSAGVQTEAGVADLTWVG 92 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEE---------------EESSGGGTTCGGGCSEEEEESSCEEEEEEET
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEEeeceee---------------eeccccccCCcceeeeeeccCCCEEEEEEeC
Confidence 567799999999999777665 778888874311 11111100 0000000112567899999999
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCccccc----cCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeeccccc
Q 001248 829 NDSYVMSAS-GGKISLFNMMTFKTMAT----FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 903 (1114)
Q Consensus 829 d~~~l~~~~-dg~i~iwd~~~~~~~~~----~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~ 903 (1114)
|+. |++++ ||+|+|||+.+++.+.. +.+|...|++++|+| ++++||+|+.||+|++||+.+++++..+.+|.+
T Consensus 93 d~~-l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~ 170 (344)
T 4gqb_B 93 ERG-ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA 170 (344)
T ss_dssp TTE-EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred CCe-EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC
Confidence 964 55666 99999999998877654 348999999999999 999999999999999999999999999999999
Q ss_pred CeeEEEEcCCC-CEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccC-CcEEEE-EeCCeEEEEEc
Q 001248 904 RITGLAFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-QIHFLV-VHETQLAIFET 980 (1114)
Q Consensus 904 ~V~~l~~s~d~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspd-g~~l~~-~~d~~i~iwd~ 980 (1114)
.|++++|++++ .+|++++.|++|++||+.+++...... ...+ ...+.+++|+|+ +++|++ +.|+.|++||+
T Consensus 171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~---~~~~---~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~ 244 (344)
T 4gqb_B 171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIG---CSAP---GYLPTSLAWHPQQSEVFVFGDENGTVSLVDT 244 (344)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----------CCCEEEEEECSSCTTEEEEEETTSEEEEEES
T ss_pred ceEEEEecCCCCCceeeeccccccccccccccceeeeee---ccee---eccceeeeecCCCCcceEEeccCCcEEEEEC
Confidence 99999999988 478999999999999999865432111 1111 135789999995 567777 57899999999
Q ss_pred CCCceeeeeecCCCCcCeeEEEECCCC-CEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCC
Q 001248 981 TKLECVKQWVPRESSAPITHATFSCDS-QLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1059 (1114)
Q Consensus 981 ~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d 1059 (1114)
++++++..+. +|...|++++|+||+ ++|++|+.|++|+|||+.+++++. +. +|... |. +++|+|++
T Consensus 245 ~~~~~~~~~~--~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~-------~H~~~-V~--~v~~sp~~ 311 (344)
T 4gqb_B 245 KSTSCVLSSA--VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ-------AHRDF-VR--DATWSPLN 311 (344)
T ss_dssp CC--CCEEEE--CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC-------CCSSC-EE--EEEECSSS
T ss_pred CCCcEEEEEc--CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec-------CCCCC-EE--EEEEeCCC
Confidence 9999998876 899999999999998 579999999999999999998663 33 44333 55 89999965
Q ss_pred CCeEEEEeCCCcEEEEeccCCC
Q 001248 1060 PNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1060 ~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
..+|++|+.||+|++|++.++.
T Consensus 312 ~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 312 HSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp TTEEEEEETTSCEEEEECCC--
T ss_pred CeEEEEEcCCCeEEEEECCCCC
Confidence 5678899999999999998865
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-37 Score=342.95 Aligned_cols=208 Identities=16% Similarity=0.233 Sum_probs=172.8
Q ss_pred cccCCCC-CeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEE
Q 001248 415 LVKDPGV-SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 493 (1114)
Q Consensus 415 ~~~~h~~-~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~i 493 (1114)
.+.+|.+ .|.+++|||||++||+|+.|++|+|||+.++..........+|...|.+++|+|+++ +|++|+.|++|++
T Consensus 10 ~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~--~l~s~s~D~~v~i 87 (345)
T 3fm0_A 10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN--YLASASFDATTCI 87 (345)
T ss_dssp EECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSS--EEEEEETTSCEEE
T ss_pred eecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCC--EEEEEECCCcEEE
Confidence 4678987 999999999999999999999999999998865443334578999999999999999 7999999999999
Q ss_pred EeCCCC--cceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCe---eeecCCCCeeEEEEEecCCCeE
Q 001248 494 WDATNG--AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR---VDYEAPGRWCTTMAYSADGTRT 568 (1114)
Q Consensus 494 wd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~---~~~~~~~~~v~~~~~s~~g~~~ 568 (1114)
||+.++ +++.++.+|...|.+++|++ ++++|++++.|++|++||++..... ..+..|...|.
T Consensus 88 w~~~~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~----------- 154 (345)
T 3fm0_A 88 WKKNQDDFECVTTLEGHENEVKSVAWAP--SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVK----------- 154 (345)
T ss_dssp EEECCC-EEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEE-----------
T ss_pred EEccCCCeEEEEEccCCCCCceEEEEeC--CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeE-----------
Confidence 998876 45778999999999999865 5589999999999999999865432 23334444444
Q ss_pred EeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceE--EEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEE
Q 001248 569 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL--TSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA 646 (1114)
Q Consensus 569 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd 646 (1114)
.++|+|++++|++++.|+.|++||..++... ..+..| ...|.+++|+|+|++|++++.|++|++|+
T Consensus 155 ----------~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h--~~~v~~l~~sp~g~~l~s~s~D~~v~iW~ 222 (345)
T 3fm0_A 155 ----------HVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGH--ESTVWSLAFDPSGQRLASCSDDRTVRIWR 222 (345)
T ss_dssp ----------EEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ----------EEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCC--CCceEEEEECCCCCEEEEEeCCCeEEEec
Confidence 4555555568999999999999999887644 455544 56899999999999999999999999998
Q ss_pred ccC
Q 001248 647 TSD 649 (1114)
Q Consensus 647 ~~~ 649 (1114)
...
T Consensus 223 ~~~ 225 (345)
T 3fm0_A 223 QYL 225 (345)
T ss_dssp EEC
T ss_pred ccc
Confidence 643
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=349.94 Aligned_cols=322 Identities=14% Similarity=0.175 Sum_probs=230.4
Q ss_pred eEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeC-
Q 001248 362 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS- 440 (1114)
Q Consensus 362 ~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~- 440 (1114)
..+.+.+++. ++.++.+.....|++.... ...|...|.+++|||||++||+|+.
T Consensus 9 sg~d~g~~~~--~~~~~g~~~~~~w~~p~~~-----------------------p~~H~~~V~~v~fSpDG~~las~s~d 63 (357)
T 4g56_B 9 SGVDLGTENL--YFQSNGSSKGSAWGRPVTA-----------------------PACMEVQIGAVRYRRDGALLLAASSL 63 (357)
T ss_dssp --------------------------------------------------------CCCSEEEEEEECSSSCEEEEEECS
T ss_pred cCCCCCccce--EEecCCCccccccCCCCCC-----------------------cccccCCEEEEEECCCCCEEEEEcCC
Confidence 4556666665 3444456777888875431 3569999999999999999999997
Q ss_pred -----CCeEEEEEccCCceeee-eEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCccee----Eeecccc
Q 001248 441 -----RHIVQIYSYHGGDEVRQ-HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY----IFEGHEA 510 (1114)
Q Consensus 441 -----dg~i~iwd~~~~~~~~~-~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~----~~~~h~~ 510 (1114)
|+.|++|+..++..... .....+|...|.+++|+|+++ +++++.|++|+|||+.+++... ...+|..
T Consensus 64 ~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~---~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~ 140 (357)
T 4g56_B 64 SSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG---ILVASDSGAVELWEILEKESLLVNKFAKYEHDD 140 (357)
T ss_dssp SSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE---EEEEETTSCEEEC--------CCCCEEECCCSS
T ss_pred CCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC---EEEEECCCEEEEeeccccceeEEEeeccCCCCC
Confidence 77899999887654321 123457899999999999986 5677889999999999887543 3457999
Q ss_pred CEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEE
Q 001248 511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 590 (1114)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~ 590 (1114)
.|.+++|++ ++++|++++.|+.|++||+++......+..|...|.+++|++++. ..++
T Consensus 141 ~V~~v~~sp--dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~--------------------~~~~ 198 (357)
T 4g56_B 141 IVKTLSVFS--DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKD--------------------TIFL 198 (357)
T ss_dssp CEEEEEECS--SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCS--------------------SCEE
T ss_pred CEEEEEECC--CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCC--------------------ceee
Confidence 999999865 568999999999999999999888888888888888888877764 2588
Q ss_pred EEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCC-CCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCC
Q 001248 591 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD-GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE 669 (1114)
Q Consensus 591 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 669 (1114)
+++.|+.|++||+++++.+..+....+...+.+++|+|+ +.+|++|+.|+.|++||+.++ +....+.
T Consensus 199 s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-~~~~~~~----------- 266 (357)
T 4g56_B 199 SCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-DSAQTSA----------- 266 (357)
T ss_dssp EEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-GGCEEEC-----------
T ss_pred eeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC-cEeEEEe-----------
Confidence 999999999999999988877766655667899999997 578999999999999998765 1111110
Q ss_pred CCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccc
Q 001248 670 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL 749 (1114)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~ 749 (1114)
T Consensus 267 -------------------------------------------------------------------------------- 266 (357)
T 4g56_B 267 -------------------------------------------------------------------------------- 266 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeC
Q 001248 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d 829 (1114)
+|...|++++|+|+
T Consensus 267 ------------------------------------------------------------------~~~~~v~~l~~sp~ 280 (357)
T 4g56_B 267 ------------------------------------------------------------------VHSQNITGLAYSYH 280 (357)
T ss_dssp ------------------------------------------------------------------CCSSCEEEEEECSS
T ss_pred ------------------------------------------------------------------ccceeEEEEEEcCC
Confidence 15556777778877
Q ss_pred C-CEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc
Q 001248 830 D-SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 892 (1114)
Q Consensus 830 ~-~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~ 892 (1114)
+ ++|++++ |++|+|||+.+++.+..+ +|...|++++|+|.++.+||+|+.||+|++|++.+.
T Consensus 281 ~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 281 SSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp SSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred CCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 6 4678887 899999999888777655 699999999999877899999999999999999764
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-37 Score=350.12 Aligned_cols=302 Identities=19% Similarity=0.305 Sum_probs=249.5
Q ss_pred eeEec-cCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEc
Q 001248 351 VTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 429 (1114)
Q Consensus 351 ~~~~~-~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 429 (1114)
..+++ +|.+.|++++|+|+|++ |++|+.||+|+|||+.+++... .+.+|...|.+++|+
T Consensus 58 ~~~~l~gH~~~V~~~~~sp~~~~-l~s~s~D~~v~iWd~~~~~~~~-------------------~~~~h~~~v~~~~~s 117 (380)
T 3iz6_a 58 CCRTLQGHSGKVYSLDWTPEKNW-IVSASQDGRLIVWNALTSQKTH-------------------AIKLHCPWVMECAFA 117 (380)
T ss_dssp EEEEECCCSSCEEEEEECTTSSC-EEEEETTSEEEEEETTTTEEEE-------------------EEECCCTTCCCCEEC
T ss_pred EeecccccccEEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCccce-------------------EEecCCCCEEEEEEC
Confidence 33444 59999999999999995 9999999999999999988765 367899999999999
Q ss_pred CCCCeEEEEeCCCeEEEEEccCCce----eeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEe
Q 001248 430 PDGSLFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 505 (1114)
Q Consensus 430 pdg~~las~~~dg~i~iwd~~~~~~----~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 505 (1114)
|+|++||+|+.|+.|+|||+.+... ......+.+|.+.|.+++|+|++.. .|++|+.|++|++||+.+++.+..+
T Consensus 118 ~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~~~~~~~ 196 (380)
T 3iz6_a 118 PNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTGQRISIF 196 (380)
T ss_dssp TTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTCCEEEEE
T ss_pred CCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCCcEEEEe
Confidence 9999999999999999999975321 1122357899999999999998654 6999999999999999999988877
Q ss_pred -----eccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCC-CCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeE
Q 001248 506 -----EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 579 (1114)
Q Consensus 506 -----~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~ 579 (1114)
.+|...|.+++|++ .++.++++|+.|++|++||++. ......+..|...|.+++|+|++.
T Consensus 197 ~~~~~~~h~~~v~~~~~~~-~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~------------- 262 (380)
T 3iz6_a 197 GSEFPSGHTADVLSLSINS-LNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ------------- 262 (380)
T ss_dssp CCCSSSSCCSCEEEEEECS-SSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSS-------------
T ss_pred ecccCCCCccCeEEEEeec-CCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCC-------------
Confidence 68999999999864 3557999999999999999984 355556666766666666666554
Q ss_pred EEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCC-----CCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccce
Q 001248 580 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG-----LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 654 (1114)
Q Consensus 580 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~ 654 (1114)
+|++++.|++|++||+.+++.+..+..+.. ...+.+++|+|+|++|++|+.||.|++||..++. ..
T Consensus 263 --------~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~-~~ 333 (380)
T 3iz6_a 263 --------RFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAE-MV 333 (380)
T ss_dssp --------EEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCC-EE
T ss_pred --------eEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCc-eE
Confidence 799999999999999999999888765422 2348899999999999999999999999987662 22
Q ss_pred eeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccC
Q 001248 655 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 734 (1114)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~ 734 (1114)
..+..
T Consensus 334 ~~~~~--------------------------------------------------------------------------- 338 (380)
T 3iz6_a 334 LNLGT--------------------------------------------------------------------------- 338 (380)
T ss_dssp EEECC---------------------------------------------------------------------------
T ss_pred EEEec---------------------------------------------------------------------------
Confidence 21100
Q ss_pred CCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecc
Q 001248 735 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQR 782 (1114)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~ 782 (1114)
...+|...|.+++|+|+|..|++++.|+.|++|++..
T Consensus 339 -----------~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 339 -----------LQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp -----------SCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred -----------ccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 0023778899999999999999999999999999753
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=333.64 Aligned_cols=289 Identities=19% Similarity=0.256 Sum_probs=245.5
Q ss_pred EeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEE
Q 001248 459 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 538 (1114)
Q Consensus 459 ~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~w 538 (1114)
.++.+|.+.|.+++|+|+++ ++++++.|++|++||+.++..+..+.+|..+|.+++|++ ++++|++|+.|++|++|
T Consensus 7 ~~~~~h~~~V~~~~fsp~~~--~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 7 KTFSNRSDRVKGIDFHPTEP--WVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIA--RKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp EEEEEECSCEEEEEECSSSS--EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEG--GGTEEEEEETTSEEEEE
T ss_pred EeecCCCCceEEEEECCCCC--EEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeC--CCCEEEEECCCCEEEEE
Confidence 36889999999999999999 799999999999999999999999999999999999865 45799999999999999
Q ss_pred EcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcc-eEEEeccCCC
Q 001248 539 LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-LLTSIDADGG 617 (1114)
Q Consensus 539 d~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~ 617 (1114)
|+.+++....+..|...|.+++|+|++. ++++++.|++|++||+.++. ....+..|
T Consensus 83 d~~~~~~~~~~~~h~~~v~~~~~~~~~~---------------------~l~sgs~D~~v~lWd~~~~~~~~~~~~~h-- 139 (304)
T 2ynn_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPTKP---------------------YVLSGSDDLTVKLWNWENNWALEQTFEGH-- 139 (304)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSS---------------------EEEEEETTSCEEEEEGGGTTEEEEEECCC--
T ss_pred ECCCCcEEEEEeCCCCcEEEEEEcCCCC---------------------EEEEECCCCeEEEEECCCCcchhhhhccc--
Confidence 9999888888888877777777776665 79999999999999998874 44566655
Q ss_pred CCCcCeEEEcC-CCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccc
Q 001248 618 LPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAA 696 (1114)
Q Consensus 618 ~~~v~~~~~s~-d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1114)
...|.+++|+| ++.+|++|+.|++|++||+.++........
T Consensus 140 ~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~-------------------------------------- 181 (304)
T 2ynn_A 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT-------------------------------------- 181 (304)
T ss_dssp CSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEEC--------------------------------------
T ss_pred CCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceecc--------------------------------------
Confidence 45799999999 689999999999999999865411100000
Q ss_pred cccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEE
Q 001248 697 SMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHL 776 (1114)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~ 776 (1114)
T Consensus 182 -------------------------------------------------------------------------------- 181 (304)
T 2ynn_A 182 -------------------------------------------------------------------------------- 181 (304)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEee--CCCEEEEEe-CCeEEEEEcCCCcccc
Q 001248 777 LWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK--NDSYVMSAS-GGKISLFNMMTFKTMA 853 (1114)
Q Consensus 777 vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~--d~~~l~~~~-dg~i~iwd~~~~~~~~ 853 (1114)
++...+..++++| ++.+|++++ |++|++||+.+++++.
T Consensus 182 ---------------------------------------~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~ 222 (304)
T 2ynn_A 182 ---------------------------------------GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA 222 (304)
T ss_dssp ---------------------------------------CCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEE
T ss_pred ---------------------------------------CCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccce
Confidence 0233445555554 677899998 8999999999999999
Q ss_pred ccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCC--EEEEEeCCCcEEEEeC
Q 001248 854 TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN--VLVSSGADSQLCVWSS 931 (1114)
Q Consensus 854 ~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~--~l~s~s~D~~v~iwd~ 931 (1114)
++.+|...|.+++|+| ++.+|++|+.||+|++||+.+++++..+..|...+++++|+|++. ++++|+.|| +.+|++
T Consensus 223 ~~~~h~~~v~~~~~~p-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~ 300 (304)
T 2ynn_A 223 TLEGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSL 300 (304)
T ss_dssp EEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEEC
T ss_pred eeCCCCCCEEEEEECC-CCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEe
Confidence 9999999999999999 899999999999999999999999999999999999999999875 578877666 888887
Q ss_pred CC
Q 001248 932 DG 933 (1114)
Q Consensus 932 ~~ 933 (1114)
..
T Consensus 301 ~~ 302 (304)
T 2ynn_A 301 GN 302 (304)
T ss_dssp C-
T ss_pred cc
Confidence 65
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-37 Score=353.52 Aligned_cols=359 Identities=11% Similarity=0.162 Sum_probs=270.7
Q ss_pred eeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEc----CCcce------eEEeeeeeeccCCCCcccc-cccccCC
Q 001248 351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEV----GSRER------LVLRNFKVWDLGACSMPLQ-AALVKDP 419 (1114)
Q Consensus 351 ~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~----~~~~~------~~~~~~~~~d~~~~~~~~~-~~~~~~h 419 (1114)
......|.+.|++++|+|+|+.+||+|+.||.|++||+ .+++. ...... ++. .....+|
T Consensus 38 ~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~ 107 (425)
T 1r5m_A 38 ILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRH----------PFALSASSGKT 107 (425)
T ss_dssp ECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEEC----------CCCCC------
T ss_pred heeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccc----------cccccccccCC
Confidence 33445578999999999999933999999999999999 88773 221000 000 0012347
Q ss_pred CCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCC
Q 001248 420 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG 499 (1114)
Q Consensus 420 ~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 499 (1114)
.+.|.+++|+|++++|++++.||.|++|| .+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++||+.++
T Consensus 108 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~ 181 (425)
T 1r5m_A 108 TNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLN---VLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISG 181 (425)
T ss_dssp CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEE---EECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTT
T ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeee---eccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCC
Confidence 88999999999999999999999999999 4555444 6789999999999999999 7999999999999999999
Q ss_pred cceeEeeccccC---------------EEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecC
Q 001248 500 AKQYIFEGHEAP---------------VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD 564 (1114)
Q Consensus 500 ~~~~~~~~h~~~---------------v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~ 564 (1114)
+.+..+..+... +.+++|++. ..+++++.|+.|++||+.+......+..+...+.+++|+|+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~ 258 (425)
T 1r5m_A 182 TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDT 258 (425)
T ss_dssp EEEEEECCC---------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETT
T ss_pred cEEEEeeccccCccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCC
Confidence 999999888777 888888654 46999999999999999988777777777776776666666
Q ss_pred CCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEE
Q 001248 565 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 644 (1114)
Q Consensus 565 g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~i 644 (1114)
++ ++++++.|+.|++||+.+++.+..+..+ ...+.+++|+|++ ++++++.||.|++
T Consensus 259 ~~---------------------~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~-~l~~~~~d~~i~i 314 (425)
T 1r5m_A 259 NK---------------------LLLSASDDGTLRIWHGGNGNSQNCFYGH--SQSIVSASWVGDD-KVISCSMDGSVRL 314 (425)
T ss_dssp TT---------------------EEEEEETTSCEEEECSSSBSCSEEECCC--SSCEEEEEEETTT-EEEEEETTSEEEE
T ss_pred CC---------------------EEEEEcCCCEEEEEECCCCccceEecCC--CccEEEEEECCCC-EEEEEeCCCcEEE
Confidence 54 7999999999999999999988888765 4479999999999 9999999999999
Q ss_pred EEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCC
Q 001248 645 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND 724 (1114)
Q Consensus 645 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 724 (1114)
||+.++ .....+.
T Consensus 315 ~d~~~~-~~~~~~~------------------------------------------------------------------ 327 (425)
T 1r5m_A 315 WSLKQN-TLLALSI------------------------------------------------------------------ 327 (425)
T ss_dssp EETTTT-EEEEEEE------------------------------------------------------------------
T ss_pred EECCCC-cEeEecc------------------------------------------------------------------
Confidence 998776 2222211
Q ss_pred ceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCC
Q 001248 725 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPS 804 (1114)
Q Consensus 725 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~ 804 (1114)
.|...|.+++|+|+++.+++++.||.|++|++.....
T Consensus 328 ------------------------~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~------------------- 364 (425)
T 1r5m_A 328 ------------------------VDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNS------------------- 364 (425)
T ss_dssp ------------------------CTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC-------------------
T ss_pred ------------------------cCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCcc-------------------
Confidence 1456788888888888888888888888888753211
Q ss_pred CccccccCCCCCCCCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCCCC--CeEEEEEecCCCcEEEEEeCCC
Q 001248 805 GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPP--AATFLAFHPQDNNIIAIGMDDS 882 (1114)
Q Consensus 805 g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~--~i~~l~~sp~d~~~la~g~~dg 882 (1114)
.. .. +....++. +.......+..+..|.. .|++++|+| ++++|++++.||
T Consensus 365 ---~~------------~~---------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg 416 (425)
T 1r5m_A 365 ---KS------------RS---------LYGNRDGI---LNPLPIPLYASYQSSQDNDYIFDLSWNC-AGNKISVAYSLQ 416 (425)
T ss_dssp -----------------------------------------CEECCEEEEECCTTCCCCEEEEEECT-TSSEEEEEESSS
T ss_pred ---ce------------ee---------eecccccc---cCcccchhhhhhcCcccCCceEEEEccC-CCceEEEEecCc
Confidence 00 00 00001222 22223346677788866 999999999 899999999999
Q ss_pred cEEEEEcc
Q 001248 883 SIQIYNVR 890 (1114)
Q Consensus 883 ~v~iwd~~ 890 (1114)
.|++||+.
T Consensus 417 ~i~iw~~~ 424 (425)
T 1r5m_A 417 EGSVVAIP 424 (425)
T ss_dssp CCEEEECC
T ss_pred eEEEEeec
Confidence 99999975
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-38 Score=366.23 Aligned_cols=332 Identities=13% Similarity=0.187 Sum_probs=268.8
Q ss_pred CCeeEEEEcCCCC-eEEEE----------eCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCC
Q 001248 421 VSVNRVIWSPDGS-LFGVA----------YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK 489 (1114)
Q Consensus 421 ~~V~~l~~spdg~-~las~----------~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~ 489 (1114)
..|.+++|||+|+ +|++| +.|+.|+|||+.+++.......+ .|...|.+++|+|+++ +|++++.|+
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~--~l~~~~~dg 89 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNK--IIAGALDNG 89 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSS--CEEEEESSS
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCC--eEEEEccCC
Confidence 3789999999998 89999 88999999999987633222233 6889999999999999 799999999
Q ss_pred CEEEEeCCC----CcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCC------Ceeee---cCCCCee
Q 001248 490 TIKVWDATN----GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG------SRVDY---EAPGRWC 556 (1114)
Q Consensus 490 ~i~iwd~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~------~~~~~---~~~~~~v 556 (1114)
.|++||+.+ .+.+..+.+|...|.+++|+++. +.+|++++.|+.|++||+.+.. ..... ..+...+
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v 168 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQ-DNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEV 168 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSS-TTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCC
T ss_pred eEEEeecccccccccchhhccCCccceEEEEEcCCC-CCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCe
Confidence 999999987 45788899999999999997652 4799999999999999998866 22222 3344455
Q ss_pred EEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCC----CCCcCeEEEcCCC-C
Q 001248 557 TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG----LPASPRIRFNKDG-C 631 (1114)
Q Consensus 557 ~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~~~~s~d~-~ 631 (1114)
.+++|+|++ +.++++++.|+.|++||+.+++.+..+..+.. ...+.+++|+|++ .
T Consensus 169 ~~~~~~~~~--------------------~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 228 (416)
T 2pm9_A 169 ISLAWNQSL--------------------AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNST 228 (416)
T ss_dssp CEEEECSSC--------------------TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTT
T ss_pred eEEEeCCCC--------------------CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCC
Confidence 555555542 35799999999999999999999988876531 4579999999997 6
Q ss_pred EEEEEeCCC---cEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCc
Q 001248 632 LLAVSTNDN---GIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDV 708 (1114)
Q Consensus 632 ~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (1114)
++++++.|+ .|++||+.++......+
T Consensus 229 ~l~~~~~d~~~~~i~~~d~~~~~~~~~~~--------------------------------------------------- 257 (416)
T 2pm9_A 229 RVATATGSDNDPSILIWDLRNANTPLQTL--------------------------------------------------- 257 (416)
T ss_dssp EEEEEECCSSSCCCCEEETTSTTSCSBCC---------------------------------------------------
T ss_pred EEEEEECCCCCceEEEEeCCCCCCCcEEe---------------------------------------------------
Confidence 899999998 99999987652111100
Q ss_pred cccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCC
Q 001248 709 RSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSS 788 (1114)
Q Consensus 709 ~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 788 (1114)
T Consensus 258 -------------------------------------------------------------------------------- 257 (416)
T 2pm9_A 258 -------------------------------------------------------------------------------- 257 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccccccCCCCCccccccCCCCCCCCCccEEEEee-CCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEE
Q 001248 789 GKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLA 866 (1114)
Q Consensus 789 ~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~-d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~ 866 (1114)
. .+|...|.+++|+| ++++|++++ ||.|++||+.+++.+..+..|...|.+++
T Consensus 258 ------------------------~-~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~ 312 (416)
T 2pm9_A 258 ------------------------N-QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTK 312 (416)
T ss_dssp ------------------------C-SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEE
T ss_pred ------------------------e-cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEE
Confidence 0 01566778888888 888888888 89999999999999999999999999999
Q ss_pred EecCCC-cEEEEEeCCCcEEEEEcccceEEEeec-----------------------------------ccccCeeEEEE
Q 001248 867 FHPQDN-NIIAIGMDDSSIQIYNVRVDEVKSKLK-----------------------------------GHSKRITGLAF 910 (1114)
Q Consensus 867 ~sp~d~-~~la~g~~dg~v~iwd~~~~~~~~~l~-----------------------------------~h~~~V~~l~~ 910 (1114)
|+| ++ .+|++++.||.|++||+.+++...... .|...+++++|
T Consensus 313 ~s~-~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (416)
T 2pm9_A 313 FAP-EAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHW 391 (416)
T ss_dssp ECT-TCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEE
T ss_pred ECC-CCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEE
Confidence 999 66 899999999999999998765332221 16778889999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCC
Q 001248 911 SHALNVLVSSGADSQLCVWSSDG 933 (1114)
Q Consensus 911 s~d~~~l~s~s~D~~v~iwd~~~ 933 (1114)
+|||++|++++.|++|+||++.+
T Consensus 392 s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 392 AFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp ETTTEEECBCTTSSCBCCBCCCC
T ss_pred eeCCeEEEEeCCCCeEEEEEecc
Confidence 99999999999999999999986
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-36 Score=331.28 Aligned_cols=214 Identities=19% Similarity=0.288 Sum_probs=183.5
Q ss_pred cccCCCCCeeEEEEcCCC-CeEEEEeCCCeEEEEEccCCce--eeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCE
Q 001248 415 LVKDPGVSVNRVIWSPDG-SLFGVAYSRHIVQIYSYHGGDE--VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 491 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg-~~las~~~dg~i~iwd~~~~~~--~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i 491 (1114)
.+.+|.+.|.+++|+|++ ++|++|+.|++|++|++.+... ......+.+|...|.+++|+|+++ ++++|+.|++|
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v 89 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTL 89 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEE
Confidence 578999999999999965 8999999999999999975322 223447889999999999999999 79999999999
Q ss_pred EEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEee
Q 001248 492 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG 571 (1114)
Q Consensus 492 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~ 571 (1114)
++||+.+++.+..+.+|...|.+++|++ ++.++++++.|++|++||++. .....+..|...+.++.+.|.+.
T Consensus 90 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~----- 161 (319)
T 3frx_A 90 RLWDVATGETYQRFVGHKSDVMSVDIDK--KASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEK----- 161 (319)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECT--TSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC-------
T ss_pred EEEECCCCCeeEEEccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCC-----
Confidence 9999999999999999999999999865 457999999999999999964 45566777888888888877653
Q ss_pred ecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 572 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
..+++..+++++.|+.|++||+.+++....+..| ...|.+++|+|+|++|++++.||.|++||+.++
T Consensus 162 ----------~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h--~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~ 228 (319)
T 3frx_A 162 ----------ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH--NSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228 (319)
T ss_dssp --------------CCEEEEEETTSCEEEEETTTTEEEEEECCC--CSCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred ----------CCCCccEEEEEeCCCEEEEEECCcchhheeecCC--CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 2234557999999999999999999988888766 457999999999999999999999999998765
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-36 Score=336.87 Aligned_cols=289 Identities=14% Similarity=0.189 Sum_probs=246.9
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw 494 (1114)
.+.+|.+.|.+++|+||+++||+|+.||+|+|||..+++... .+..|...|.+++|+|+|. ++++|+.|+.+++|
T Consensus 59 ~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVY 133 (354)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEE
T ss_pred EecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEE
Confidence 478999999999999999999999999999999999887655 5778999999999999999 79999999999999
Q ss_pred eCCCC------cceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeE
Q 001248 495 DATNG------AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRT 568 (1114)
Q Consensus 495 d~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~ 568 (1114)
++... .....+.+|...|.+++|+++ +..|++++.|++|++||+++.+....+..|...|.++.++++.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~--- 208 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNS--DMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSE--- 208 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECSSCEEEEEECSS--SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCS---
T ss_pred EEeccccccccccceeeeccCCcEEEEEEeCC--CCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCC---
Confidence 98643 345678889999999998654 4789999999999999999988877887777777777665532
Q ss_pred EeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEcc
Q 001248 569 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 648 (1114)
Q Consensus 569 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~ 648 (1114)
++++|++++.||.|++||+++++++..+..|. ..|.+++|+|++.+|++++.|++|++||+.
T Consensus 209 ----------------~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~--~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~ 270 (354)
T 2pbi_B 209 ----------------TGNTFVSGGCDKKAMVWDMRSGQCVQAFETHE--SDVNSVRYYPSGDAFASGSDDATCRLYDLR 270 (354)
T ss_dssp ----------------SCCEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred ----------------CCCEEEEEeCCCeEEEEECCCCcEEEEecCCC--CCeEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 24579999999999999999999999887664 479999999999999999999999999986
Q ss_pred CCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeE
Q 001248 649 DGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKV 728 (1114)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i 728 (1114)
++. ....+.
T Consensus 271 ~~~-~~~~~~---------------------------------------------------------------------- 279 (354)
T 2pbi_B 271 ADR-EVAIYS---------------------------------------------------------------------- 279 (354)
T ss_dssp TTE-EEEEEC----------------------------------------------------------------------
T ss_pred CCc-EEEEEc----------------------------------------------------------------------
Confidence 541 110000
Q ss_pred EEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccc
Q 001248 729 WKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM 808 (1114)
Q Consensus 729 w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~ 808 (1114)
.
T Consensus 280 --------------------------------~----------------------------------------------- 280 (354)
T 2pbi_B 280 --------------------------------K----------------------------------------------- 280 (354)
T ss_dssp --------------------------------C-----------------------------------------------
T ss_pred --------------------------------C-----------------------------------------------
Confidence 0
Q ss_pred cccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 001248 809 TNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY 887 (1114)
Q Consensus 809 ~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iw 887 (1114)
..+...+.+++|+|++++|++++ |++|++||+.+++.+..+.+|...|++++|+| ++++||+|+.||+|++|
T Consensus 281 ------~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~sp-dg~~l~sgs~D~~v~vW 353 (354)
T 2pbi_B 281 ------ESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSP-DGTAFCSGSWDHTLRVW 353 (354)
T ss_dssp ------TTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT-TSSCEEEEETTSEEEEE
T ss_pred ------CCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECC-CCCEEEEEcCCCCEEec
Confidence 00223467788999999999998 89999999999998889999999999999999 99999999999999999
Q ss_pred E
Q 001248 888 N 888 (1114)
Q Consensus 888 d 888 (1114)
+
T Consensus 354 ~ 354 (354)
T 2pbi_B 354 A 354 (354)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-37 Score=339.06 Aligned_cols=258 Identities=15% Similarity=0.177 Sum_probs=201.4
Q ss_pred cCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCc-ccccccccCCCCCeeEEEEcCCCCe
Q 001248 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSM-PLQAALVKDPGVSVNRVIWSPDGSL 434 (1114)
Q Consensus 356 ~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~h~~~V~~l~~spdg~~ 434 (1114)
.|...|.+++|||||+ +|++++ |+++++||... .+|+...... .........|...|.+++|+||+ .
T Consensus 28 ~~~~~v~~~~fs~dG~-~l~~~s-d~~~r~Wd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~ 95 (344)
T 4gqb_B 28 CMERQLEAARYRSDGA-LLLGAS-SLSGRCWAGSL---------WLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-G 95 (344)
T ss_dssp SCCSEEEEEEECTTSC-EEEEEE-CCSSSCCCEEE---------EEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-E
T ss_pred cccCCEEEEEECCCCC-EEEEEe-CCceEEeecee---------eeeccccccCCcceeeeeeccCCCEEEEEEeCCC-e
Confidence 3667799999999999 477776 88899997321 1121100000 00011123456789999999985 6
Q ss_pred EEEEeCCCeEEEEEccCCceeeee-EeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEE
Q 001248 435 FGVAYSRHIVQIYSYHGGDEVRQH-LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 513 (1114)
Q Consensus 435 las~~~dg~i~iwd~~~~~~~~~~-~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 513 (1114)
|++|+.||+|+|||+.+++.+... ..+.+|.+.|++++|+|+|+ +|++|+.|++|++||+.+++++.++.+|...|.
T Consensus 96 l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~ 173 (344)
T 4gqb_B 96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVT 173 (344)
T ss_dssp EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceE
Confidence 789999999999999998765432 34568999999999999999 799999999999999999999999999999999
Q ss_pred EEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecC--CCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEE
Q 001248 514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA--PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 591 (1114)
Q Consensus 514 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~ 591 (1114)
+++|++... .++++++.|++|++||+++.+....+.. +...+.+++|+|++ ++++++
T Consensus 174 ~~~~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~--------------------~~~l~s 232 (344)
T 4gqb_B 174 CVAASPHKD-SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQ--------------------SEVFVF 232 (344)
T ss_dssp EEEECSSCT-TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSC--------------------TTEEEE
T ss_pred EEEecCCCC-CceeeeccccccccccccccceeeeeecceeeccceeeeecCCC--------------------CcceEE
Confidence 999976543 5889999999999999998777665432 33345555555433 246888
Q ss_pred EeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCC-CEEEEEeCCCcEEEEEccCC
Q 001248 592 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG-CLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 592 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~~~~~dg~i~iwd~~~~ 650 (1114)
|+.||.|++||+++++++..+..|. ..|.+++|+|++ ++|++++.|++|++||+.++
T Consensus 233 g~~dg~v~~wd~~~~~~~~~~~~h~--~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~ 290 (344)
T 4gqb_B 233 GDENGTVSLVDTKSTSCVLSSAVHS--QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS 290 (344)
T ss_dssp EETTSEEEEEESCC--CCEEEECCS--SCEEEEEECSSSSCCEEEEETTSCEEEECTTCC
T ss_pred eccCCcEEEEECCCCcEEEEEcCCC--CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Confidence 9999999999999999999998764 479999999998 57999999999999998766
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-36 Score=333.23 Aligned_cols=216 Identities=20% Similarity=0.308 Sum_probs=180.5
Q ss_pred cccCCCCCeeEEEE-----cC-CCCeEEEEeCCCeEEEEEccCCce----eeeeEeeccccCCeeEEEecCCCCeeEEEE
Q 001248 415 LVKDPGVSVNRVIW-----SP-DGSLFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVIT 484 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~-----sp-dg~~las~~~dg~i~iwd~~~~~~----~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s 484 (1114)
.+.+|.+.|++++| ++ |+++|++|+.|++|+|||+.+++. ......+.+|...|.+++|+|++. ++++
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~--~l~s 93 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC--FAIS 93 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT--EEEE
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC--EEEE
Confidence 57899999999999 77 999999999999999999976432 123346889999999999999999 7999
Q ss_pred ecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeec---CCCCeeEEEEE
Q 001248 485 CGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE---APGRWCTTMAY 561 (1114)
Q Consensus 485 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~---~~~~~v~~~~~ 561 (1114)
|+.|++|++||+++++.+..+.+|...|.+++|++ ++.+|++++.|++|++||+.. ....... .+...+.+++|
T Consensus 94 ~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~ 170 (343)
T 2xzm_R 94 SSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP--DNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRY 170 (343)
T ss_dssp EETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS--STTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEE
T ss_pred EcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC--CCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeee
Confidence 99999999999999999999999999999999865 457999999999999999973 2222222 56667888888
Q ss_pred ecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCc
Q 001248 562 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG 641 (1114)
Q Consensus 562 s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~ 641 (1114)
+|++... ..+.|.+.++++++.|+.|++||. ..+....+..| ...|.+++|+|+|++|++++.||.
T Consensus 171 ~~~~~~~-----------~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h--~~~v~~~~~s~~g~~l~sgs~dg~ 236 (343)
T 2xzm_R 171 SPIMKSA-----------NKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAH--ESNVNHLSISPNGKYIATGGKDKK 236 (343)
T ss_dssp CCCCCSC-----------SCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECC--SSCEEEEEECTTSSEEEEEETTCE
T ss_pred ccccccc-----------cccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCc--cccceEEEECCCCCEEEEEcCCCe
Confidence 8876411 123455678999999999999994 55666677655 457999999999999999999999
Q ss_pred EEEEEccC
Q 001248 642 IKILATSD 649 (1114)
Q Consensus 642 i~iwd~~~ 649 (1114)
|++||+.+
T Consensus 237 v~iwd~~~ 244 (343)
T 2xzm_R 237 LLIWDILN 244 (343)
T ss_dssp EEEEESSC
T ss_pred EEEEECCC
Confidence 99999743
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-36 Score=349.88 Aligned_cols=355 Identities=14% Similarity=0.142 Sum_probs=287.0
Q ss_pred CCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEE
Q 001248 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 438 (1114)
Q Consensus 359 ~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 438 (1114)
+.+++++|+|+|++ |++|+.||.|++||+.+++... .+..| ..+...+|+|++++||+|
T Consensus 57 ~~~~~~~~s~~g~~-l~~~~~d~~v~i~d~~~~~~~~-------------------~~~~~-~~~~~~~~~~~~~~l~~~ 115 (420)
T 3vl1_A 57 DAGKGNTFEKVGSH-LYKARLDGHDFLFNTIIRDGSK-------------------MLKRA-DYTAVDTAKLQMRRFILG 115 (420)
T ss_dssp BCCTTCEEEEEETT-EEEEEETTEEEEEECCSEETTT-------------------TSCSC-CEEEEEEECSSSCEEEEE
T ss_pred ccccceeeeecCCe-EEEEEcCCcEEEEEecccceee-------------------EEecC-CceEEEEEecCCCEEEEE
Confidence 44568999999996 9999999999999998765432 24445 455566789999999999
Q ss_pred eCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeec
Q 001248 439 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 518 (1114)
Q Consensus 439 ~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 518 (1114)
+.||.|++||+.+++... .+.+|...|.+++|+|+++ +|++|+.|++|++||+.+++.+..+.+|...|.+++|+
T Consensus 116 ~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 190 (420)
T 3vl1_A 116 TTEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 190 (420)
T ss_dssp ETTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEE
T ss_pred ECCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEc
Confidence 999999999999887654 5679999999999999999 79999999999999999999999999999999999987
Q ss_pred cCCCceEEEEEecCCeEEEEEcCCCCCeeeecC---CCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCC
Q 001248 519 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA---PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 595 (1114)
Q Consensus 519 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~---~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 595 (1114)
+ ++.+|++++.|+.|++||+++.+....+.. +...+.++++.+++...........+..++|+|+++++++++.|
T Consensus 191 ~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 268 (420)
T 3vl1_A 191 D--RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVS 268 (420)
T ss_dssp T--TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETT
T ss_pred C--CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCC
Confidence 6 457999999999999999998887777764 56789999999887766666666788889999999999999999
Q ss_pred CeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCC-EEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCC
Q 001248 596 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC-LLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 674 (1114)
Q Consensus 596 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (1114)
|.|++||+.+++.+..+.. .+...+.+++|+|++. +|++++.||.|++||+.++...+..+..+
T Consensus 269 g~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-------------- 333 (420)
T 3vl1_A 269 GVITVHNVFSKEQTIQLPS-KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLIN-------------- 333 (420)
T ss_dssp SCEEEEETTTCCEEEEECC-TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEES--------------
T ss_pred CeEEEEECCCCceeEEccc-ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhcc--------------
Confidence 9999999999988877753 2345799999999998 99999999999999998774333333211
Q ss_pred ccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccce
Q 001248 675 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 754 (1114)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i 754 (1114)
+...|
T Consensus 334 ---------------------------------------------------------------------------~~~~v 338 (420)
T 3vl1_A 334 ---------------------------------------------------------------------------EGTPI 338 (420)
T ss_dssp ---------------------------------------------------------------------------TTSCE
T ss_pred ---------------------------------------------------------------------------CCCCc
Confidence 34566
Q ss_pred EEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCC---
Q 001248 755 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS--- 831 (1114)
Q Consensus 755 ~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~--- 831 (1114)
..+.+ ++++.+++++.|+.|++|++........ +........ + ..+...|.+++|+|+++
T Consensus 339 ~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~----------~~~~~~~~~----~--~~~~~~v~~~~~s~~~~~~g 401 (420)
T 3vl1_A 339 NNVYF-AAGALFVSSGFDTSIKLDIISDPESERP----------AIEFETPTF----L--VSNDDAVSQFCYVSDDESNG 401 (420)
T ss_dssp EEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSC----------EECTTSCEE----E--CCSSCCCCEEEEECCSSSSC
T ss_pred eEEEe-CCCCEEEEecCCccEEEEeccCCCCCcc----------ceeccCccE----E--ccCCcceEEEEEccCCCCcc
Confidence 67744 5788899999999999999875321100 000011111 1 13788999999999999
Q ss_pred -EEEEEeCCeEEEEEcCC
Q 001248 832 -YVMSASGGKISLFNMMT 848 (1114)
Q Consensus 832 -~l~~~~dg~i~iwd~~~ 848 (1114)
.+++|++|.+.+|++++
T Consensus 402 ~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 402 EVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EEEEEETTTEEEEEESCC
T ss_pred eEEEEcCCceEEEEeccC
Confidence 56666699999999864
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=358.74 Aligned_cols=367 Identities=14% Similarity=0.183 Sum_probs=268.8
Q ss_pred cCCCCceEEEEcCCCCeEEEEE----------ecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeE
Q 001248 356 NQGSSPMSMDFHPVQQTLLLVG----------TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR 425 (1114)
Q Consensus 356 ~h~~~v~~v~~spdg~~ll~tg----------~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~ 425 (1114)
.+...|++++|+|+|+.+|++| +.||.|+|||+.+++.... .....|...|.+
T Consensus 10 ~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~-----------------~~~~~~~~~v~~ 72 (416)
T 2pm9_A 10 AEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP-----------------IASLQVDSKFND 72 (416)
T ss_dssp CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC-----------------SCCCCCSSCEEE
T ss_pred hhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE-----------------EEEEecCCceEE
Confidence 3456789999999998679999 8899999999998753210 013468889999
Q ss_pred EEEcCCCCeEEEEeCCCeEEEEEccCCce-eeeeEeeccccCCeeEEEecCC-CCeeEEEEecCCCCEEEEeCCCCc---
Q 001248 426 VIWSPDGSLFGVAYSRHIVQIYSYHGGDE-VRQHLEIDAHVGGVNDIAFSHP-NKQLCVITCGDDKTIKVWDATNGA--- 500 (1114)
Q Consensus 426 l~~spdg~~las~~~dg~i~iwd~~~~~~-~~~~~~l~~h~~~V~~v~~s~d-~~~~~l~s~~~d~~i~iwd~~~~~--- 500 (1114)
++|+|++++|++|+.||.|++||+.+... ......+.+|...|.+++|+|+ +. +|++++.|+.|++||+.+++
T Consensus 73 ~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~ 150 (416)
T 2pm9_A 73 LDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTESP 150 (416)
T ss_dssp EEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSCT
T ss_pred EEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCcccc
Confidence 99999999999999999999999987211 1123368899999999999999 66 79999999999999999887
Q ss_pred ---cee---EeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCC------CCeeEEEEEecCCCeE
Q 001248 501 ---KQY---IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP------GRWCTTMAYSADGTRT 568 (1114)
Q Consensus 501 ---~~~---~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~------~~~v~~~~~s~~g~~~ 568 (1114)
... .+.+|...|.+++|++.. +.++++++.|+.|++||+++.+....+..+ ...+.+++|+|++.
T Consensus 151 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-- 227 (416)
T 2pm9_A 151 SNYTPLTPGQSMSSVDEVISLAWNQSL-AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNS-- 227 (416)
T ss_dssp TTCCCBCCCCSCCSSCCCCEEEECSSC-TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCT--
T ss_pred ccccccccccccCCCCCeeEEEeCCCC-CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCC--
Confidence 333 346799999999987652 479999999999999999987766666554 34455555555432
Q ss_pred EeeecccceeEEEecCCCCEEEEEeCCC---eEEEEECCCc-ceEEEec-cCCCCCCcCeEEEcC-CCCEEEEEeCCCcE
Q 001248 569 YQGFRKRSLGVVQFDTTKNRFLAAGDDF---SIKFWDMDSV-QLLTSID-ADGGLPASPRIRFNK-DGCLLAVSTNDNGI 642 (1114)
Q Consensus 569 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~-~~~~~~~-~~~~~~~v~~~~~s~-d~~~l~~~~~dg~i 642 (1114)
.++++++.|+ .|++||++++ ..+..+. .| ...|.+++|+| ++++|++++.||.|
T Consensus 228 ------------------~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~l~s~~~dg~v 287 (416)
T 2pm9_A 228 ------------------TRVATATGSDNDPSILIWDLRNANTPLQTLNQGH--QKGILSLDWCHQDEHLLLSSGRDNTV 287 (416)
T ss_dssp ------------------TEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCC--SSCEEEEEECSSCSSCEEEEESSSEE
T ss_pred ------------------CEEEEEECCCCCceEEEEeCCCCCCCcEEeecCc--cCceeEEEeCCCCCCeEEEEeCCCCE
Confidence 4788999998 9999999986 5555555 44 45799999999 99999999999999
Q ss_pred EEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccC
Q 001248 643 KILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEES 722 (1114)
Q Consensus 643 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 722 (1114)
++||+.++ +.+..+.
T Consensus 288 ~~wd~~~~-~~~~~~~---------------------------------------------------------------- 302 (416)
T 2pm9_A 288 LLWNPESA-EQLSQFP---------------------------------------------------------------- 302 (416)
T ss_dssp EEECSSSC-CEEEEEE----------------------------------------------------------------
T ss_pred EEeeCCCC-ccceeec----------------------------------------------------------------
Confidence 99998876 3333221
Q ss_pred CCceeEEEeccCCCCccccccccCccccccceEEEEEccCc-ceeeecccCceEEEEeecccccCCCCCccccccccccC
Q 001248 723 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSG-NAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ 801 (1114)
Q Consensus 723 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~ 801 (1114)
.|...|.+++|+|++ ..+++++.|+.|++|++.....
T Consensus 303 --------------------------~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~---------------- 340 (416)
T 2pm9_A 303 --------------------------ARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTN---------------- 340 (416)
T ss_dssp --------------------------CSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCC----------------
T ss_pred --------------------------CCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCC----------------
Confidence 155678889999999 8999999999999999753111
Q ss_pred CCCCccccccCCCCCCCC-----CccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEE
Q 001248 802 PPSGIMMTNDVTDSNPEE-----AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIA 876 (1114)
Q Consensus 802 ~~~g~~~~~~~~~~~~~~-----~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la 876 (1114)
... ... ......+.+.+..++.+.. +. .... .....+...+.+++|+| +|++||
T Consensus 341 ----------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~-~~~~~~~~~~~~~~~s~-dg~~la 399 (416)
T 2pm9_A 341 ----------TLD--EQETETKQQESETDFWNNVSREESKEK--PS-----VFHL-QAPTWYGEPSPAAHWAF-GGKLVQ 399 (416)
T ss_dssp ----------SSC--C----------------------CCSC--CC-----SSCC-CCCSTTCCCSCCCEEET-TTEEEC
T ss_pred ----------Ccc--cccccccccCCcccccccccccccccc--cc-----cccc-cCCccccCCccceEEee-CCeEEE
Confidence 000 100 0011112222222222110 00 0011 22233667788999999 999999
Q ss_pred EEeCCCcEEEEEcccc
Q 001248 877 IGMDDSSIQIYNVRVD 892 (1114)
Q Consensus 877 ~g~~dg~v~iwd~~~~ 892 (1114)
+|+.||.|+||++.+.
T Consensus 400 ~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 400 ITPDGKGVSITNPKIS 415 (416)
T ss_dssp BCTTSSCBCCBCCCCC
T ss_pred EeCCCCeEEEEEeccC
Confidence 9999999999998764
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-36 Score=336.48 Aligned_cols=299 Identities=16% Similarity=0.214 Sum_probs=237.9
Q ss_pred cccc-ceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEe
Q 001248 749 LRAT-KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 827 (1114)
Q Consensus 749 ~~~~-~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s 827 (1114)
+|.. .|..++|+|+|++|++++.|+.|+||++..... ........+|...|.+++|+
T Consensus 13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~----------------------~~~~~~~~~h~~~v~~~~~s 70 (345)
T 3fm0_A 13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW----------------------ICKSVLSEGHQRTVRKVAWS 70 (345)
T ss_dssp CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEE----------------------EEEEEECSSCSSCEEEEEEC
T ss_pred CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc----------------------eeeeeeccccCCcEEEEEEC
Confidence 3666 899999999999999999999999999763211 00000112489999999999
Q ss_pred eCCCEEEEEe-CCeEEEEEcCCC--ccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc---eEEEeeccc
Q 001248 828 KNDSYVMSAS-GGKISLFNMMTF--KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD---EVKSKLKGH 901 (1114)
Q Consensus 828 ~d~~~l~~~~-dg~i~iwd~~~~--~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~---~~~~~l~~h 901 (1114)
|++++|++++ |++|++|++.++ +.+..+.+|...|.+++|+| ++++||+|+.|++|++||+.++ +++..+.+|
T Consensus 71 p~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h 149 (345)
T 3fm0_A 71 PCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSH 149 (345)
T ss_dssp TTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCC
T ss_pred CCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCc
Confidence 9999999999 999999998766 45678899999999999999 8999999999999999999875 456778899
Q ss_pred ccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEc
Q 001248 902 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFET 980 (1114)
Q Consensus 902 ~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~ 980 (1114)
...|++++|+|++++|++++.|++|++|++..++. .+.....+|. ..|.+++|+|+|++|++ +.|+.|++||.
T Consensus 150 ~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~---~~~~~~~~h~---~~v~~l~~sp~g~~l~s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 150 TQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW---VCCATLEGHE---STVWSLAFDPSGQRLASCSDDRTVRIWRQ 223 (345)
T ss_dssp CSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE---EEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE---EEEEEecCCC---CceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence 99999999999999999999999999999887432 2233445555 48999999999999999 68999999996
Q ss_pred CCC---------------ceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeee----EEeCCCcccCC
Q 001248 981 TKL---------------ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR----CRINPSAYLPA 1041 (1114)
Q Consensus 981 ~~~---------------~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~----~~~~~~~~~~~ 1041 (1114)
... +++..+. ..|...|.+++|+|++.+|++++.|+.|++|+...+... ..+. .....
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~--~~~~~ 300 (345)
T 3fm0_A 224 YLPGNEQGVACSGSDPSWKCICTLS-GFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLT--AHLHQ 300 (345)
T ss_dssp ECTTCTTCCCCC---CEEEEEEEEC-SSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEE--EEETT
T ss_pred ccCCCCccceeeccCCccceeEEec-CCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEE--eeecc
Confidence 432 1222222 248899999999999999999999999999998765321 1110 01122
Q ss_pred CCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCCC
Q 001248 1042 GVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEG 1082 (1114)
Q Consensus 1042 ~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~~ 1082 (1114)
+|... |. +++|+|+++.+|++|+.||+|++|++.+++.
T Consensus 301 ~h~~~-V~--~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 301 AHSQD-VN--CVAWNPKEPGLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp SSSSC-EE--EEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred cccCc-Ee--EeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence 44333 55 8999996557999999999999999999884
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=373.59 Aligned_cols=526 Identities=11% Similarity=0.062 Sum_probs=370.2
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
+...+.+++||| ++ |+..+. +.|++|++.+++... +.+|...|.+++|||||++||
T Consensus 13 ~~~~~~~~~~S~--~~-iaf~~~-~~l~~~~~~gg~~~~--------------------lt~~~~~v~~~~~SPDG~~la 68 (1045)
T 1k32_A 13 MPNLLLNPDIHG--DR-IIFVCC-DDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIA 68 (1045)
T ss_dssp CCCCCEEEEEET--TE-EEEEET-TEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEE
T ss_pred ccceEeCcEEeC--CE-EEEEEC-CcEEEEECCCCcEEE--------------------eeeCCCcccCeEECCCCCEEE
Confidence 456789999996 44 555543 799999999876543 678999999999999999999
Q ss_pred EEeCC------CeEEEEEccCCceeeeeEeeccccCCe-------eEEEecCCCCeeEEEEecCC------CCEEEEeCC
Q 001248 437 VAYSR------HIVQIYSYHGGDEVRQHLEIDAHVGGV-------NDIAFSHPNKQLCVITCGDD------KTIKVWDAT 497 (1114)
Q Consensus 437 s~~~d------g~i~iwd~~~~~~~~~~~~l~~h~~~V-------~~v~~s~d~~~~~l~s~~~d------~~i~iwd~~ 497 (1114)
+++.+ ..|++||+.+++. . .+..|...+ ..++|+|||+ ++++++.+ ..|++||+.
T Consensus 69 ~~s~~~~~~~~~~i~~~d~~~g~~-~---~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~ 142 (1045)
T 1k32_A 69 IRVMRGSSLNTADLYFYNGENGEI-K---RITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND 142 (1045)
T ss_dssp EEEEESTTCCEEEEEEEETTTTEE-E---ECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred EEEeeccCCCCCeEEEEECCCCCe-E---EcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence 88643 4799999988763 2 577888888 9999999998 67777654 358888887
Q ss_pred CCcceeEeeccccCEEEEeeccCCCceEEEEEec------------CCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCC
Q 001248 498 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL------------DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG 565 (1114)
Q Consensus 498 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~------------d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g 565 (1114)
+++.. .+..+. ...++|++ | ++++++. +....+|..........+..+...+.++.|++
T Consensus 143 ~g~~~-~l~~~~--~~~~~~sp---G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~-- 213 (1045)
T 1k32_A 143 GINFV-PLNLGP--ATHILFAD---G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVG-- 213 (1045)
T ss_dssp GTEEE-ECCSCS--CSEEEEET---T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEET--
T ss_pred CCCeE-EecCCC--cceeeeCC---C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeC--
Confidence 77643 333332 23455654 5 7888753 23455664333233333344444455555544
Q ss_pred CeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCC-cceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEE
Q 001248 566 TRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 644 (1114)
Q Consensus 566 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~i 644 (1114)
+ ..+++++.++.+.+|.+.. +.....+..+. .+...+|+|||+.|+++. ++.|.+
T Consensus 214 -------------------d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~---~~~~~~~SpDG~~la~~~-~~~i~~ 269 (1045)
T 1k32_A 214 -------------------H-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT---DYYPRHLNTDGRRILFSK-GGSIYI 269 (1045)
T ss_dssp -------------------T-EEEEEECTTSSCEEEEEETTSCSCEECCCCC---SSCEEEEEESSSCEEEEE-TTEEEE
T ss_pred -------------------C-EEEEEEeccCceEEEEEeCCCCcceEecCCC---CcceeeEcCCCCEEEEEe-CCEEEE
Confidence 4 3466677889889997653 44445554443 367889999999988874 789999
Q ss_pred EEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCC
Q 001248 645 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND 724 (1114)
Q Consensus 645 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 724 (1114)
|+.... . +..+.++... .
T Consensus 270 ~d~~~~-~-l~~l~~~~~~------------------------------------------------------------~ 287 (1045)
T 1k32_A 270 FNPDTE-K-IEKIEIGDLE------------------------------------------------------------S 287 (1045)
T ss_dssp ECTTTC-C-EEECCCCCCC------------------------------------------------------------B
T ss_pred ecCCce-E-eeeeccCccc------------------------------------------------------------c
Confidence 987322 1 1122111000 0
Q ss_pred ceeEEEeccCCCCccccccccCccccccceEEEEEc-cCcceeeecccCceEEEEeecccccCCCCCccccccccccCCC
Q 001248 725 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFT-NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP 803 (1114)
Q Consensus 725 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~ 803 (1114)
... | ..+...+..++|+ |+|+.++.++ ++.+++|++.
T Consensus 288 ~~~-~------------------~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~---------------------- 325 (1045)
T 1k32_A 288 PED-R------------------IISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVS---------------------- 325 (1045)
T ss_dssp CCS-E------------------EEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTT----------------------
T ss_pred ccc-c------------------cccccccceeeecCCCCCEEEEEE-cCEEEEEcCC----------------------
Confidence 000 0 0145567899999 9999888877 7788887654
Q ss_pred CCccccccCCCCCCCC-CccEEEEeeCCCEEEEEe-CCeEE-EEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeC
Q 001248 804 SGIMMTNDVTDSNPEE-AVPCFALSKNDSYVMSAS-GGKIS-LFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD 880 (1114)
Q Consensus 804 ~g~~~~~~~~~~~~~~-~v~~v~~s~d~~~l~~~~-dg~i~-iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~ 880 (1114)
++.... +. .+.. .+..++|+ ||+.|++++ ++.+. +|++.+++.. .+.+|...+..++|+| ||++||+++.
T Consensus 326 ~~~~~~--~~--~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~Sp-DG~~la~~~~ 398 (1045)
T 1k32_A 326 GTYVLK--VP--EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDR-NGKFAVVAND 398 (1045)
T ss_dssp SSBEEE--CS--CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECT-TSSEEEEEET
T ss_pred CCceEE--cc--CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECC-CCCEEEEECC
Confidence 222221 11 1555 78899999 999999988 57788 8999876654 3447778899999999 9999999999
Q ss_pred CCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCC----------cEEEEeCCCCccccccccccCCCCCC
Q 001248 881 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS----------QLCVWSSDGWEKQKNRFLQIPTGRTP 950 (1114)
Q Consensus 881 dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~----------~v~iwd~~~~~~~~~~~~~~~~~~~~ 950 (1114)
++.|++||+.+++....+.+|...|.+++|||||++|++++.++ .|++||+.+++. .....+.
T Consensus 399 ~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~------~~l~~~~- 471 (1045)
T 1k32_A 399 RFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI------FAATTEN- 471 (1045)
T ss_dssp TSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE------EECSCSS-
T ss_pred CCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcE------EEeeCCC-
Confidence 99999999999998888878999999999999999999887754 899999988542 1122222
Q ss_pred CCCCceEEEEccCCcEEEE-EeCCeEEEEEcCCCce-----------------------------------------eee
Q 001248 951 TAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLEC-----------------------------------------VKQ 988 (1114)
Q Consensus 951 ~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~~~~-----------------------------------------~~~ 988 (1114)
..+..++|+|||++|+. +.++...+|+...... .+.
T Consensus 472 --~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~ 549 (1045)
T 1k32_A 472 --SHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRS 549 (1045)
T ss_dssp --SBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGC
T ss_pred --cccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHce
Confidence 35678999999999988 4555555565432211 011
Q ss_pred eecCCCCcCeeEEEECCCCCEEEE-------------EEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEe
Q 001248 989 WVPRESSAPITHATFSCDSQLVYA-------------CFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAA 1055 (1114)
Q Consensus 989 ~~~~~h~~~v~~l~~s~dg~~l~s-------------~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 1055 (1114)
.....|...+..++++|||+++++ ...+..|++||+.+++..... .+ +. .++|
T Consensus 550 ~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~-------~~-----v~--~~~~ 615 (1045)
T 1k32_A 550 SPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK-------NN-----LT--DLRL 615 (1045)
T ss_dssp EECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE-------EE-----EE--EEEE
T ss_pred EEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee-------cC-----cc--eEEE
Confidence 122346678999999999988875 123557899999988754322 11 33 7889
Q ss_pred cCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1056 HPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1056 ~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
+| ||++|++++.| .+++|++.+++
T Consensus 616 S~-DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 616 SA-DRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp CT-TSCEEEEEETT-SCEEEEESSCT
T ss_pred CC-CCCEEEEEcCC-cEEEEeCccCc
Confidence 99 78999998866 89999998876
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-35 Score=336.75 Aligned_cols=303 Identities=18% Similarity=0.302 Sum_probs=228.8
Q ss_pred CCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeecccc------------------CCeeEEEecCCCCe
Q 001248 418 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV------------------GGVNDIAFSHPNKQ 479 (1114)
Q Consensus 418 ~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~------------------~~V~~v~~s~d~~~ 479 (1114)
+|.+.|.+++|||||++||+|+ ++.++||++.+++.+. .+.+|. ..|.+++|+|+|+
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~- 136 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVA---RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK- 136 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEE---EECC-----------------CCCCBEEEEEECTTSS-
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEE---EecCccccccccccccccccCCCceeEEEEEECCCCC-
Confidence 5999999999999999999986 6889999999988665 343332 2499999999999
Q ss_pred eEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEE
Q 001248 480 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM 559 (1114)
Q Consensus 480 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~ 559 (1114)
+|++|+.|++|++||+.+++.+..+.+|...|.+++|++ ++.+|++++.|++|++||+++
T Consensus 137 -~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p--~~~~l~s~s~d~~v~iwd~~~----------------- 196 (393)
T 1erj_A 137 -FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP--SGDKLVSGSGDRTVRIWDLRT----------------- 196 (393)
T ss_dssp -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTT-----------------
T ss_pred -EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC--CCCEEEEecCCCcEEEEECCC-----------------
Confidence 799999999999999999999999999999999888765 345677777776666666643
Q ss_pred EEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcC-CCCEEEEEeC
Q 001248 560 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTN 638 (1114)
Q Consensus 560 ~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~ 638 (1114)
++....+..+ ..+.+++|+| ++++|++++.
T Consensus 197 ----------------------------------------------~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~s~ 227 (393)
T 1erj_A 197 ----------------------------------------------GQCSLTLSIE---DGVTTVAVSPGDGKYIAAGSL 227 (393)
T ss_dssp ----------------------------------------------TEEEEEEECS---SCEEEEEECSTTCCEEEEEET
T ss_pred ----------------------------------------------CeeEEEEEcC---CCcEEEEEECCCCCEEEEEcC
Confidence 3333333222 2477899999 8999999999
Q ss_pred CCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccc
Q 001248 639 DNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRI 718 (1114)
Q Consensus 639 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 718 (1114)
||.|++||+.++ .....+.....
T Consensus 228 d~~v~iwd~~~~-~~~~~~~~~~~-------------------------------------------------------- 250 (393)
T 1erj_A 228 DRAVRVWDSETG-FLVERLDSENE-------------------------------------------------------- 250 (393)
T ss_dssp TSCEEEEETTTC-CEEEEEC------------------------------------------------------------
T ss_pred CCcEEEEECCCC-cEEEeeccccc--------------------------------------------------------
Confidence 999999998876 22222210000
Q ss_pred cccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCcccccccc
Q 001248 719 TEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQ 798 (1114)
Q Consensus 719 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 798 (1114)
...+|...|.+++|+|+++.|++++.|+.|++||+.....
T Consensus 251 ---------------------------~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~------------- 290 (393)
T 1erj_A 251 ---------------------------SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN------------- 290 (393)
T ss_dssp -----------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------------
T ss_pred ---------------------------CCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCC-------------
Confidence 0012566777777777777777777777777776542100
Q ss_pred ccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEE
Q 001248 799 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIG 878 (1114)
Q Consensus 799 ~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g 878 (1114)
..... ....+.+...+.+|...|.+++|+| ++.+|++|
T Consensus 291 ----------------------~~~~~-------------------~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sg 328 (393)
T 1erj_A 291 ----------------------KSDSK-------------------TPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSG 328 (393)
T ss_dssp ---------------------------------------------------CEEEEEECCSSCEEEEEECG-GGCEEEEE
T ss_pred ----------------------ccccc-------------------CCCCCcceEEEecccCcEEEEEECC-CCCEEEEE
Confidence 00000 0011233445667889999999999 89999999
Q ss_pred eCCCcEEEEEcccceEEEeecccccCeeEEEEcC------CCCEEEEEeCCCcEEEEeCCC
Q 001248 879 MDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH------ALNVLVSSGADSQLCVWSSDG 933 (1114)
Q Consensus 879 ~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~------d~~~l~s~s~D~~v~iwd~~~ 933 (1114)
+.||.|++||+.+++.+..+.+|...|.+++|++ ++++||+|+.|++|+||++..
T Consensus 329 s~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 329 SKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred eCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 9999999999999999999999999999999986 688999999999999999865
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=332.36 Aligned_cols=324 Identities=14% Similarity=0.180 Sum_probs=262.5
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
|.+.|.+++|||||++ ++++..++.+.+|+........ ...+|...|.+++|+|++++|+
T Consensus 8 ~~~~v~~~~~s~dg~~-~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~l~ 67 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQM-QPVPFPPDALIGPGIPRHARQI-------------------NTLNHGEVVCAVTISNPTRHVY 67 (337)
T ss_dssp EEEECCEEEECSSSCE-EECCCCTTSSSSTTCCSEEEEE-------------------EEECCSSCCCEEEECSSSSEEE
T ss_pred cCCceeEEEECCCCCE-EEeecCCCcEeccccCCccccc-------------------eeccCCCceEEEEEecCCcEEE
Confidence 6678999999999995 7777777777776655433322 1347999999999999999999
Q ss_pred EEeCCCeEEEEEccCCceeeeeEeec--cccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCc--ceeEeeccccCE
Q 001248 437 VAYSRHIVQIYSYHGGDEVRQHLEID--AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA--KQYIFEGHEAPV 512 (1114)
Q Consensus 437 s~~~dg~i~iwd~~~~~~~~~~~~l~--~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~h~~~v 512 (1114)
+++ ||.|++||+.+++.......+. +|...|.+++|+|+++ ++++++.|+.|++||+.+++ ....+.+|...|
T Consensus 68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i 144 (337)
T 1gxr_A 68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144 (337)
T ss_dssp EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence 998 9999999999876554433444 7999999999999999 79999999999999999887 567788899999
Q ss_pred EEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEE
Q 001248 513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 592 (1114)
Q Consensus 513 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~ 592 (1114)
.+++|++ ++.++++++.|+.|++||+++.+....+..+...+.+++|+|++ ++++++
T Consensus 145 ~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~---------------------~~l~~~ 201 (337)
T 1gxr_A 145 YALAISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDG---------------------TKLWTG 201 (337)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS---------------------SEEEEE
T ss_pred EEEEECC--CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCC---------------------CEEEEE
Confidence 9999865 55799999999999999999877666666666666666666555 479999
Q ss_pred eCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCC
Q 001248 593 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 672 (1114)
Q Consensus 593 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (1114)
+.|+.|++||+.+++.+..+... ..+.+++|+|+++++++++.++.|++||+.++.. .. +
T Consensus 202 ~~dg~i~~~d~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~-~--------------- 261 (337)
T 1gxr_A 202 GLDNTVRSWDLREGRQLQQHDFT---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQ-L--------------- 261 (337)
T ss_dssp ETTSEEEEEETTTTEEEEEEECS---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-EE-E---------------
T ss_pred ecCCcEEEEECCCCceEeeecCC---CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-EE-E---------------
Confidence 99999999999999988887543 4689999999999999999999999999865410 00 0
Q ss_pred CCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCcccccc
Q 001248 673 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 752 (1114)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 752 (1114)
T Consensus 262 -------------------------------------------------------------------------------- 261 (337)
T 1gxr_A 262 -------------------------------------------------------------------------------- 261 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCE
Q 001248 753 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 832 (1114)
Q Consensus 753 ~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~ 832 (1114)
..|...+.+++|+|++++
T Consensus 262 --------------------------------------------------------------~~~~~~v~~~~~~~~~~~ 279 (337)
T 1gxr_A 262 --------------------------------------------------------------HLHESCVLSLKFAYCGKW 279 (337)
T ss_dssp --------------------------------------------------------------CCCSSCEEEEEECTTSSE
T ss_pred --------------------------------------------------------------cCCccceeEEEECCCCCE
Confidence 014556777777788888
Q ss_pred EEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcc
Q 001248 833 VMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 890 (1114)
Q Consensus 833 l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~ 890 (1114)
|++++ ||.|++||+.+++.+... .|...|.+++|+| ++++|++++.||.|++|++.
T Consensus 280 l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 280 FVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISV-DDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECT-TSCEEEEEETTSCEEEEEEE
T ss_pred EEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECC-CCCEEEEecCCCeEEEEEEe
Confidence 88777 788888888877766443 3778899999999 89999999999999999963
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-35 Score=321.89 Aligned_cols=250 Identities=18% Similarity=0.273 Sum_probs=214.1
Q ss_pred EeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCC
Q 001248 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1114)
...+|.+.|++++|+|+|++ |++|+.||.|++|++.+++... .+.+|...|.+++|+|++
T Consensus 18 ~~~gh~~~v~~~~~s~~~~~-l~s~~~dg~i~iw~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~ 77 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEK-------------------TISGHKLGISDVAWSSDS 77 (312)
T ss_dssp EECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCCEEE-------------------EECCCSSCEEEEEECTTS
T ss_pred EEcccCCcEEEEEECCCCCE-EEEeeCCCeEEEEeCCCcccch-------------------hhccCCCceEEEEEcCCC
Confidence 34459999999999999995 9999999999999999887665 367899999999999999
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCE
Q 001248 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 512 (1114)
Q Consensus 433 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 512 (1114)
++|++|+.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ ++++|+.|++|++||+++++.+..+..|...|
T Consensus 78 ~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v 152 (312)
T 4ery_A 78 NLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 152 (312)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred CEEEEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCCCCcE
Confidence 999999999999999999988665 6889999999999999999 79999999999999999999999999999999
Q ss_pred EEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecC-CCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEE
Q 001248 513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA-PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 591 (1114)
Q Consensus 513 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~ 591 (1114)
.+++|++ ++.++++++.|+.|++||+++......+.. +.. .+..++|+|+++++++
T Consensus 153 ~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~l~~ 209 (312)
T 4ery_A 153 SAVHFNR--DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP---------------------PVSFVKFSPNGKYILA 209 (312)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCC---------------------CEEEEEECTTSSEEEE
T ss_pred EEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCC---------------------ceEEEEECCCCCEEEE
Confidence 9999865 557999999999999999987665443322 222 3445566666668999
Q ss_pred EeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEc-CCCCEEEEEeCCCcEEEEEccCC
Q 001248 592 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 592 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
++.|+.|++||+.+++.+..+..+..........++ +++.+|++|+.||.|++||+.++
T Consensus 210 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~ 269 (312)
T 4ery_A 210 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 269 (312)
T ss_dssp EETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC
T ss_pred EcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc
Confidence 999999999999999999998876543333334444 67899999999999999999876
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=355.05 Aligned_cols=355 Identities=11% Similarity=0.072 Sum_probs=235.2
Q ss_pred CcceeEeccCCCCceEEEEcCCC---------CeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccC
Q 001248 348 PKTVTRTLNQGSSPMSMDFHPVQ---------QTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD 418 (1114)
Q Consensus 348 ~~~~~~~~~h~~~v~~v~~spdg---------~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 418 (1114)
..+...++.+.+.|++|+|+|++ + +||+|+.++..
T Consensus 123 ~~r~~~~~~~~~~V~sv~w~p~~~~~~~~~~~~-~LAv~~~~~~~----------------------------------- 166 (524)
T 2j04_B 123 GKRRGFIYNVGGLVTDIAWLNIEENTDIGKDIQ-YLAVAVSQYMD----------------------------------- 166 (524)
T ss_dssp CCSCEEEEECCC--CCCSCEEECCCCSSCSSEE-EEEEEEEC--------------------------------------
T ss_pred CCcceEEEECCCceeEEEecccCCCCccCcCCe-EEEEEEecccC-----------------------------------
Confidence 34455667789999999999997 5 58888755310
Q ss_pred CCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceee-eeEeeccccCCeeEEEecCC------CCeeEEEEecCCCCE
Q 001248 419 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR-QHLEIDAHVGGVNDIAFSHP------NKQLCVITCGDDKTI 491 (1114)
Q Consensus 419 h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~-~~~~l~~h~~~V~~v~~s~d------~~~~~l~s~~~d~~i 491 (1114)
-..+|+++.||+++.|++|+|||+.+++... ...++.+|.+.|.+++|+|+ +. +|++++.|++|
T Consensus 167 -------~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~--~LAs~s~Dgtv 237 (524)
T 2j04_B 167 -------EPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVG--CLSFVSQEGTI 237 (524)
T ss_dssp ----------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSC--EEEEEETTSCE
T ss_pred -------CccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCc--eEEEEecCCeE
Confidence 0136899999999999999999999876432 12346678899999999997 45 79999999999
Q ss_pred EEEeCCCCcc-----------eeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCC-eeeecCCCCeeEEE
Q 001248 492 KVWDATNGAK-----------QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTM 559 (1114)
Q Consensus 492 ~iwd~~~~~~-----------~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~v~~~ 559 (1114)
++||+.++.. ..++.+|...|.+++|++. ..|++|+.||+|++||+++... ...+..|...|.++
T Consensus 238 rlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~---~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv 314 (524)
T 2j04_B 238 NFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP---TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSV 314 (524)
T ss_dssp EEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS---SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEE
T ss_pred EEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC---CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEE
Confidence 9999987642 2478899999999999753 4899999999999999987643 33466676666666
Q ss_pred --EEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEe
Q 001248 560 --AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST 637 (1114)
Q Consensus 560 --~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~ 637 (1114)
+++++|. .+|++++.|++|++||+++++.+..+..+.....|.+++|+|+++.+++++
T Consensus 315 ~~~~s~~g~--------------------~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~ 374 (524)
T 2j04_B 315 STAYSDFED--------------------TVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSD 374 (524)
T ss_dssp EEECCTTSC--------------------CEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEEC
T ss_pred EEEcCCCCC--------------------eEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeC
Confidence 3444431 479999999999999999988776665553323478999999999999999
Q ss_pred CCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCccc
Q 001248 638 NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPR 717 (1114)
Q Consensus 638 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 717 (1114)
.|++|++||++++. ....+.
T Consensus 375 ~d~tv~lwd~~~~~-~~~~l~----------------------------------------------------------- 394 (524)
T 2j04_B 375 GASSLRAVPSRAAF-AVHPLV----------------------------------------------------------- 394 (524)
T ss_dssp SSSEEEEEETTCTT-CCEEEE-----------------------------------------------------------
T ss_pred CCCcEEEEECcccc-cceeee-----------------------------------------------------------
Confidence 99999999987651 111110
Q ss_pred ccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccc
Q 001248 718 ITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAP 797 (1114)
Q Consensus 718 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 797 (1114)
+
T Consensus 395 -------------------------------g------------------------------------------------ 395 (524)
T 2j04_B 395 -------------------------------S------------------------------------------------ 395 (524)
T ss_dssp -------------------------------E------------------------------------------------
T ss_pred -------------------------------c------------------------------------------------
Confidence 1
Q ss_pred cccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCC-----CCCCeEEEEEecCC
Q 001248 798 QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP-----PPPAATFLAFHPQD 871 (1114)
Q Consensus 798 ~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~-----~~~~i~~l~~sp~d 871 (1114)
|...|.+++|+|+|++|++|+ ||+|++||+... .+..+.. +...+..++|+| +
T Consensus 396 -------------------H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp-~ 454 (524)
T 2j04_B 396 -------------------RETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSI-K 454 (524)
T ss_dssp -------------------CSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCS-S
T ss_pred -------------------CCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCC-C
Confidence 444455555555555555555 555555555432 2221111 112467889999 7
Q ss_pred CcEEEEEeCCCcEEEEEcc-cceEEEeecccccCeeEEEEcCCCC---EEEEEeCCCcEEEEeCCC
Q 001248 872 NNIIAIGMDDSSIQIYNVR-VDEVKSKLKGHSKRITGLAFSHALN---VLVSSGADSQLCVWSSDG 933 (1114)
Q Consensus 872 ~~~la~g~~dg~v~iwd~~-~~~~~~~l~~h~~~V~~l~~s~d~~---~l~s~s~D~~v~iwd~~~ 933 (1114)
+..+. ... .+++|+.. ++.++..+.+|...|++|+|+|++. +||+|+.||+|+||++..
T Consensus 455 g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 455 DDKYR-IDS--SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp SCEEE-ECC--CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred CCeEE-ccC--CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 76553 222 23444433 4677888999999999999999954 999999999999999976
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-35 Score=321.78 Aligned_cols=291 Identities=21% Similarity=0.369 Sum_probs=244.7
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw 494 (1114)
.+.+|...|.+++|+|+|++|++|+.||.|++|++.+++... .+.+|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~vw 92 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDSN--LLVSASDDKTLKIW 92 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch---hhccCCCceEEEEEcCCCC--EEEEECCCCEEEEE
Confidence 478999999999999999999999999999999999887655 6789999999999999999 79999999999999
Q ss_pred eCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecc
Q 001248 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1114)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~ 574 (1114)
|+.+++++..+.+|...|.+++|++ ++.++++++.|+.|++||+++......+..+...+.+++|++++.
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-------- 162 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-------- 162 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS--------
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCC--------
Confidence 9999999999999999999999865 457999999999999999998877777777766666666666554
Q ss_pred cceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccce
Q 001248 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 654 (1114)
Q Consensus 575 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~ 654 (1114)
++++++.|+.|++||+.+++.+..+.... ...+..++|+|++++|++++.||.|++||+.++ +..
T Consensus 163 -------------~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~ 227 (312)
T 4ery_A 163 -------------LIVSSSYDGLCRIWDTASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCL 227 (312)
T ss_dssp -------------EEEEEETTSCEEEEETTTCCEEEEECCSS-CCCEEEEEECTTSSEEEEEETTTEEEEEETTTT-EEE
T ss_pred -------------EEEEEeCCCcEEEEECCCCceeeEEeccC-CCceEEEEECCCCCEEEEEcCCCeEEEEECCCC-cEE
Confidence 79999999999999999998887775432 346889999999999999999999999998776 222
Q ss_pred eeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccC
Q 001248 655 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 734 (1114)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~ 734 (1114)
..+.+|..
T Consensus 228 ~~~~~~~~------------------------------------------------------------------------ 235 (312)
T 4ery_A 228 KTYTGHKN------------------------------------------------------------------------ 235 (312)
T ss_dssp EEECSSCC------------------------------------------------------------------------
T ss_pred EEEEecCC------------------------------------------------------------------------
Confidence 22221110
Q ss_pred CCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCC
Q 001248 735 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 814 (1114)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~ 814 (1114)
T Consensus 236 -------------------------------------------------------------------------------- 235 (312)
T 4ery_A 236 -------------------------------------------------------------------------------- 235 (312)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEe--CCCcEEEEEcc
Q 001248 815 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM--DDSSIQIYNVR 890 (1114)
Q Consensus 815 ~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~--~dg~v~iwd~~ 890 (1114)
....+......+++++|++++ ||.|++||+.+++.+..+.+|...|.+++|+| ++.+|++++ .|++|++|+..
T Consensus 236 --~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 236 --EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp --SSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECS-SSSEEEEEECTTTCCEEEEECC
T ss_pred --ceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecC-cCCceEEEEccCCccEEEecCC
Confidence 000011122235677888888 89999999999999999999999999999999 899999987 69999999864
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=330.63 Aligned_cols=320 Identities=12% Similarity=0.160 Sum_probs=257.1
Q ss_pred CCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCC
Q 001248 419 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 498 (1114)
Q Consensus 419 h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~ 498 (1114)
|.+.|.+++|||||++++++..++.+.+|+........ ...+|...|.+++|+|+++ ++++++ |+.|++||+.+
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~~~~-dg~i~iw~~~~ 81 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQI---NTLNHGEVVCAVTISNPTR--HVYTGG-KGCVKVWDISH 81 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEE---EEECCSSCCCEEEECSSSS--EEEEEC-BSEEEEEETTS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccc---eeccCCCceEEEEEecCCc--EEEEcC-CCeEEEEECCC
Confidence 45689999999999999999887777776554432222 3447999999999999999 788888 99999999988
Q ss_pred Ccce---eEee--ccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCC--eeeecCCCCeeEEEEEecCCCeEEee
Q 001248 499 GAKQ---YIFE--GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQG 571 (1114)
Q Consensus 499 ~~~~---~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~g~~~~~~ 571 (1114)
++.. ..+. +|...|.+++|++ +++++++++.|+.|++||+.+.+. ...+..+...+.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~------------ 147 (337)
T 1gxr_A 82 PGNKSPVSQLDCLNRDNYIRSCKLLP--DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYAL------------ 147 (337)
T ss_dssp TTCCSCSEEEECSCTTSBEEEEEECT--TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEE------------
T ss_pred CCceeeeecccccCCCCcEEEEEEcC--CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEE------------
Confidence 7643 3333 7999999999865 557999999999999999987652 33344444444444
Q ss_pred ecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCc
Q 001248 572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI 651 (1114)
Q Consensus 572 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~ 651 (1114)
+|+|+++++++++.||.|++||+.+++.+..+..+ ...+.+++|+|++++|++++.||.|++||+.++.
T Consensus 148 ---------~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 216 (337)
T 1gxr_A 148 ---------AISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGH--TDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR 216 (337)
T ss_dssp ---------EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred ---------EECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecc--cCceEEEEECCCCCEEEEEecCCcEEEEECCCCc
Confidence 45555558999999999999999999999888765 4479999999999999999999999999987651
Q ss_pred cceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEe
Q 001248 652 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL 731 (1114)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~ 731 (1114)
....+
T Consensus 217 -~~~~~-------------------------------------------------------------------------- 221 (337)
T 1gxr_A 217 -QLQQH-------------------------------------------------------------------------- 221 (337)
T ss_dssp -EEEEE--------------------------------------------------------------------------
T ss_pred -eEeee--------------------------------------------------------------------------
Confidence 11100
Q ss_pred ccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCcccccc
Q 001248 732 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND 811 (1114)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~ 811 (1114)
T Consensus 222 -------------------------------------------------------------------------------- 221 (337)
T 1gxr_A 222 -------------------------------------------------------------------------------- 221 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcc
Q 001248 812 VTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 890 (1114)
Q Consensus 812 ~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~ 890 (1114)
.+...+.+++|+|+++++++++ ++.|++||+.+++. ..+..|...|.+++|+| ++++|++++.||.|++||+.
T Consensus 222 ----~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 222 ----DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp ----ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETT
T ss_pred ----cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECC-CCCEEEEecCCCcEEEEECC
Confidence 0334466777777888888777 78888888877654 35667889999999999 89999999999999999999
Q ss_pred cceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001248 891 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 931 (1114)
Q Consensus 891 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~ 931 (1114)
+++.+.. ..|...|++++|+|++++|++++.||.|++|++
T Consensus 296 ~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 296 YGASIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TCCEEEE-EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCeEEEE-ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 9887744 458899999999999999999999999999996
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=331.42 Aligned_cols=275 Identities=14% Similarity=0.226 Sum_probs=206.2
Q ss_pred ceeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEc
Q 001248 350 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 429 (1114)
Q Consensus 350 ~~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 429 (1114)
++.+.+.|.+.|+|++|||||++ ||+|+ ++.++||++.+++.+.......-.... ...........+...|.+++|+
T Consensus 56 ~~~~~~~h~~~V~~v~fspdg~~-la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~v~~v~~s 132 (393)
T 1erj_A 56 ELHKSLDHTSVVCCVKFSNDGEY-LATGC-NKTTQVYRVSDGSLVARLSDDSAANKD-PENLNTSSSPSSDLYIRSVCFS 132 (393)
T ss_dssp EEEEEEECSSCCCEEEECTTSSE-EEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEEC
T ss_pred eeEEecCCCCEEEEEEECCCCCE-EEEEc-CCcEEEEEecCCCEEEEecCccccccc-cccccccccCCCceeEEEEEEC
Confidence 34566789999999999999995 88876 789999999999876532110000000 0000001112344569999999
Q ss_pred CCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccc
Q 001248 430 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE 509 (1114)
Q Consensus 430 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~ 509 (1114)
|||++||+|+.|++|+|||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|++|++||+.++++...+. +.
T Consensus 133 ~dg~~l~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~ 206 (393)
T 1erj_A 133 PDGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-IE 206 (393)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-CS
T ss_pred CCCCEEEEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-cC
Confidence 999999999999999999999987665 6889999999999999999 79999999999999999999888776 56
Q ss_pred cCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEE
Q 001248 510 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 589 (1114)
Q Consensus 510 ~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l 589 (1114)
..+.+++|++. ++.++++++.|+.|++||+++......+.... .... .+...+..++|+|++++|
T Consensus 207 ~~v~~~~~~~~-~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~-------------~~~~-~h~~~v~~v~~~~~g~~l 271 (393)
T 1erj_A 207 DGVTTVAVSPG-DGKYIAAGSLDRAVRVWDSETGFLVERLDSEN-------------ESGT-GHKDSVYSVVFTRDGQSV 271 (393)
T ss_dssp SCEEEEEECST-TCCEEEEEETTSCEEEEETTTCCEEEEEC-------------------C-CCSSCEEEEEECTTSSEE
T ss_pred CCcEEEEEECC-CCCEEEEEcCCCcEEEEECCCCcEEEeecccc-------------cCCC-CCCCCEEEEEECCCCCEE
Confidence 78999998652 55899999999999999998866554432100 0000 112345556666666689
Q ss_pred EEEeCCCeEEEEECCCcc------------eEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 590 LAAGDDFSIKFWDMDSVQ------------LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 590 ~~~~~dg~i~iwd~~~~~------------~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
++++.|+.|++||+.+.. +...+.+| ...|.+++|++++.+|++++.|+.|++||..++
T Consensus 272 ~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~ 342 (393)
T 1erj_A 272 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH--KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG 342 (393)
T ss_dssp EEEETTSEEEEEEC---------------CEEEEEECC--SSCEEEEEECGGGCEEEEEETTSEEEEEETTTC
T ss_pred EEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecc--cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence 999999999999987632 34445444 457999999999999999999999999999877
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-35 Score=340.09 Aligned_cols=346 Identities=12% Similarity=0.097 Sum_probs=258.3
Q ss_pred CCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCc
Q 001248 421 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA 500 (1114)
Q Consensus 421 ~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 500 (1114)
..+++++|+|+|++|++++.|+.|++||+.+++... .+..| ..+....|+++++ +|++|+.|+.|++||+.+++
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~ 130 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNL 130 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcc
Confidence 345689999999999999999999999999876544 44455 4455668899999 79999999999999999999
Q ss_pred ceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEE
Q 001248 501 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 580 (1114)
Q Consensus 501 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~ 580 (1114)
....+.+|...|.+++|++ ++.+|++++.|+.|++||+.+.+....+..|...|.+++|+|+++
T Consensus 131 ~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-------------- 194 (420)
T 3vl1_A 131 QREIDQAHVSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGR-------------- 194 (420)
T ss_dssp EEEETTSSSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTT--------------
T ss_pred eeeecccccCccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCC--------------
Confidence 9888899999999999876 457999999999999999999888888777777777777777665
Q ss_pred EecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCC-CCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccc
Q 001248 581 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG-GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN 659 (1114)
Q Consensus 581 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 659 (1114)
+|++++.|+.|++||+.+++.+..+..+. +...+.+++|.+++... ++..... .
T Consensus 195 -------~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----------~~~~~~~--~------ 249 (420)
T 3vl1_A 195 -------NVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ----------LHEISTS--K------ 249 (420)
T ss_dssp -------EEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS----------CGGGCCC--C------
T ss_pred -------EEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce----------eeecccC--c------
Confidence 79999999999999999999998887542 23345555554432211 0000000 0
Q ss_pred cccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCcc
Q 001248 660 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ 739 (1114)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~ 739 (1114)
T Consensus 250 -------------------------------------------------------------------------------- 249 (420)
T 3vl1_A 250 -------------------------------------------------------------------------------- 249 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCC
Q 001248 740 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE 819 (1114)
Q Consensus 740 ~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~ 819 (1114)
+.+++|+|+++.+++++.||.|++||+.. +........ .|..
T Consensus 250 --------------v~~~~~s~~~~~l~~~~~dg~i~i~d~~~----------------------~~~~~~~~~--~~~~ 291 (420)
T 3vl1_A 250 --------------KNNLEFGTYGKYVIAGHVSGVITVHNVFS----------------------KEQTIQLPS--KFTC 291 (420)
T ss_dssp --------------CCTTCSSCTTEEEEEEETTSCEEEEETTT----------------------CCEEEEECC--TTSS
T ss_pred --------------ccceEEcCCCCEEEEEcCCCeEEEEECCC----------------------CceeEEccc--ccCC
Confidence 00112334444444444455454444321 111110011 2677
Q ss_pred CccEEEEeeCCC-EEEEEe-CCeEEEEEcCCCcc-ccccCC-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc---
Q 001248 820 AVPCFALSKNDS-YVMSAS-GGKISLFNMMTFKT-MATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD--- 892 (1114)
Q Consensus 820 ~v~~v~~s~d~~-~l~~~~-dg~i~iwd~~~~~~-~~~~~~-~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~--- 892 (1114)
.|.+++|+|+++ +|++++ ||.|++||+.+++. +..+.. |...|.++.+ + ++++|++++.||.|++|++...
T Consensus 292 ~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~l~s~~~d~~v~iw~~~~~~~~ 369 (420)
T 3vl1_A 292 SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-A-AGALFVSSGFDTSIKLDIISDPESE 369 (420)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-E-TTEEEEEETTTEEEEEEEECCTTCC
T ss_pred CceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-C-CCCEEEEecCCccEEEEeccCCCCC
Confidence 889999999998 888888 89999999988754 566665 5667777755 5 6789999999999999998763
Q ss_pred ------eEEEeecccccCeeEEEEcCCCC---EEEEEeCCCcEEEEeCCC
Q 001248 893 ------EVKSKLKGHSKRITGLAFSHALN---VLVSSGADSQLCVWSSDG 933 (1114)
Q Consensus 893 ------~~~~~l~~h~~~V~~l~~s~d~~---~l~s~s~D~~v~iwd~~~ 933 (1114)
.....+.+|.+.|.+++|+|+++ .|++++.+|.+.+|+++.
T Consensus 370 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 370 RPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp SCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred ccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 22234667899999999999999 788888899999999875
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-36 Score=348.39 Aligned_cols=373 Identities=11% Similarity=0.139 Sum_probs=268.6
Q ss_pred EEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC-CCCeEEEEeCCCe
Q 001248 365 DFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFGVAYSRHI 443 (1114)
Q Consensus 365 ~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las~~~dg~ 443 (1114)
.|+|+++. +++++ .|+. +++.+.. +..+|.+.|++++|+| ++++||+|+.||+
T Consensus 34 ~f~~~~~~-~~~~~------~w~~-~g~~~~~------------------~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~ 87 (437)
T 3gre_A 34 EFGPIQEI-VRSPN------MGNL-RGKLIAT------------------LMENEPNSITSSAVSPGETPYLITGSDQGV 87 (437)
T ss_dssp GGCCCCCC-CCCCC------GGGC-CCCEEEE------------------ECTTTTSCEEEEEEECSSSCEEEEEETTSE
T ss_pred hcCCcccc-ccccc------cccc-cceEEee------------------eccCCCCceEEEEECCCCCCEEEEecCCce
Confidence 47888885 66544 3773 3444442 2388999999999999 9999999999999
Q ss_pred EEEEEccC---CceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCC---CCcceeEeec----------
Q 001248 444 VQIYSYHG---GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT---NGAKQYIFEG---------- 507 (1114)
Q Consensus 444 i~iwd~~~---~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~---~~~~~~~~~~---------- 507 (1114)
|+|||+.+ +........+ +|...|.+++|+|+++ +|++|+.|++|++||+. +++.+..+.+
T Consensus 88 v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~ 164 (437)
T 3gre_A 88 IKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKN 164 (437)
T ss_dssp EEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGG
T ss_pred EEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccC
Confidence 99999987 5433222233 5999999999999999 79999999999999995 6665554443
Q ss_pred --cccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecC--CCCeeEEEEEecCCCeEEeeecccceeEEEec
Q 001248 508 --HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA--PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 583 (1114)
Q Consensus 508 --h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~ 583 (1114)
+...+.++.+...+++.++++++.|+.|++||+++.+....+.. |...|.+++|+|+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~------------------- 225 (437)
T 3gre_A 165 FGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEE------------------- 225 (437)
T ss_dssp GSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTT-------------------
T ss_pred cccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCC-------------------
Confidence 34556666655567789999999999999999998777666655 4455555555554
Q ss_pred CCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEc----CCCCEEEEEeCCCcEEEEEccCCccceeeccc
Q 001248 584 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN----KDGCLLAVSTNDNGIKILATSDGIRLLRTFEN 659 (1114)
Q Consensus 584 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s----~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 659 (1114)
+++|++++.||.|++||+++++.+..+.... ...|.+++|+ +++.+|++++.||.|++||+.++ .....+.+
T Consensus 226 --~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~ 301 (437)
T 3gre_A 226 --CCVLILGTTRGIIDIWDIRFNVLIRSWSFGD-HAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG-HCQYAFIN 301 (437)
T ss_dssp --SCEEEEEETTSCEEEEETTTTEEEEEEBCTT-CEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT-EEEEEEES
T ss_pred --CCEEEEEcCCCeEEEEEcCCccEEEEEecCC-CCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC-cEEEEEEc
Confidence 4589999999999999999999988886322 2468899555 56889999999999999999888 45555544
Q ss_pred cccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCcc
Q 001248 660 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ 739 (1114)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~ 739 (1114)
|...
T Consensus 302 ~~~~---------------------------------------------------------------------------- 305 (437)
T 3gre_A 302 SDEQ---------------------------------------------------------------------------- 305 (437)
T ss_dssp SSSC----------------------------------------------------------------------------
T ss_pred CCCC----------------------------------------------------------------------------
Confidence 3321
Q ss_pred ccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCC
Q 001248 740 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE 819 (1114)
Q Consensus 740 ~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~ 819 (1114)
+..+.|+|+++.+. +. .+.+..|..
T Consensus 306 --------------~~~~~~~~~~~~l~----~~-------------------------------------~~~~~~~~~ 330 (437)
T 3gre_A 306 --------------PSMEHFLPIEKGLE----EL-------------------------------------NFCGIRSLN 330 (437)
T ss_dssp --------------CCGGGGSCBCSSGG----GC-------------------------------------CCCCCCSGG
T ss_pred --------------Cccceecccccccc----cc-------------------------------------eecccccCC
Confidence 11122233332220 00 011112778
Q ss_pred CccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCC---CCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEE
Q 001248 820 AVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP---PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 895 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~---~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~ 895 (1114)
.|.+++|+ ++++|++++ |+.|++||+.+++....+.+|. ..+....+++ ...+++.. |+...+...
T Consensus 331 ~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~ 400 (437)
T 3gre_A 331 ALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTA-NLTMLLRK--------MKRTSTHSV 400 (437)
T ss_dssp GGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEET-TEEEEEEE--------CC-------
T ss_pred ceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeec-ceEEEEEe--------ccccccccc
Confidence 89999999 888999998 9999999999999988887754 3456666776 55555443 333444455
Q ss_pred EeecccccCeeEEEEcCC--CCEEEEEeCCCcEEEEe
Q 001248 896 SKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWS 930 (1114)
Q Consensus 896 ~~l~~h~~~V~~l~~s~d--~~~l~s~s~D~~v~iwd 930 (1114)
..+..|.+.|++++|+++ +.+|++|+.||+|+||+
T Consensus 401 ~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 401 DDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred CcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 666789999999999998 78999999999999995
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=323.49 Aligned_cols=290 Identities=18% Similarity=0.292 Sum_probs=221.9
Q ss_pred eEeeccccCCeeEEEe-----cC-CCCeeEEEEecCCCCEEEEeCCCC-------cceeEeeccccCEEEEeeccCCCce
Q 001248 458 HLEIDAHVGGVNDIAF-----SH-PNKQLCVITCGDDKTIKVWDATNG-------AKQYIFEGHEAPVYSVCPHHKENIQ 524 (1114)
Q Consensus 458 ~~~l~~h~~~V~~v~~-----s~-d~~~~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~ 524 (1114)
...+.+|.+.|++++| ++ +++ +|+||+.|++|++||+.++ .+...+.+|...|.+++|++ ++.
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~--~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~--~~~ 89 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQKENEDSP--VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQ--ENC 89 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSSTTCCCC--EEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECS--STT
T ss_pred eeeeccchhhhhheeeEEEeecCCCCC--EEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECC--CCC
Confidence 3468899999999999 76 787 8999999999999998753 45677899999999999865 557
Q ss_pred EEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECC
Q 001248 525 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD 604 (1114)
Q Consensus 525 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 604 (1114)
++++++.|++|++||+++......+..|...|.+++|+|+++ ++++++.|+.|++||+.
T Consensus 90 ~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~---------------------~l~s~~~d~~i~~wd~~ 148 (343)
T 2xzm_R 90 FAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR---------------------QILSAGAEREIKLWNIL 148 (343)
T ss_dssp EEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTT---------------------EEEEEETTSCEEEEESS
T ss_pred EEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCC---------------------EEEEEcCCCEEEEEecc
Confidence 999999999999999998887777777777777777766665 79999999999999997
Q ss_pred CcceEEEeccCCCCCCcCeEEEcCCC----------CEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCC
Q 001248 605 SVQLLTSIDADGGLPASPRIRFNKDG----------CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 674 (1114)
Q Consensus 605 ~~~~~~~~~~~~~~~~v~~~~~s~d~----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (1114)
............+...|.+++|+|++ .++++++.||.|++||.. . .....
T Consensus 149 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~-~~~~~------------------ 208 (343)
T 2xzm_R 149 GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-F-QIRYT------------------ 208 (343)
T ss_dssp SCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-T-EEEEE------------------
T ss_pred CCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-C-ceeEE------------------
Confidence 44333322223445678999999876 455555555555555521 1 00000
Q ss_pred ccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccce
Q 001248 675 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 754 (1114)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i 754 (1114)
T Consensus 209 -------------------------------------------------------------------------------- 208 (343)
T 2xzm_R 209 -------------------------------------------------------------------------------- 208 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEE
Q 001248 755 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM 834 (1114)
Q Consensus 755 ~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~ 834 (1114)
+. +|...|.+++|+|+|++|+
T Consensus 209 ---------------------------------------------------------~~--~h~~~v~~~~~s~~g~~l~ 229 (343)
T 2xzm_R 209 ---------------------------------------------------------FK--AHESNVNHLSISPNGKYIA 229 (343)
T ss_dssp ---------------------------------------------------------EE--CCSSCEEEEEECTTSSEEE
T ss_pred ---------------------------------------------------------Ec--CccccceEEEECCCCCEEE
Confidence 00 1667788888888888888
Q ss_pred EEe-CCeEEEEEcCCC-ccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEE--eec-----------
Q 001248 835 SAS-GGKISLFNMMTF-KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS--KLK----------- 899 (1114)
Q Consensus 835 ~~~-dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~--~l~----------- 899 (1114)
+++ ||+|++||+.+. .....+. +...|.+++|+| ++.++++| .|+.|++||+.+++... .+.
T Consensus 230 sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp-~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (343)
T 2xzm_R 230 TGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNP-KLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQK 306 (343)
T ss_dssp EEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECS-SSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBC
T ss_pred EEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECC-CCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhc
Confidence 888 888888888433 3333332 455699999999 88888765 57889999998765433 333
Q ss_pred ccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 001248 900 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 934 (1114)
Q Consensus 900 ~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~ 934 (1114)
+|...|++++|+|+|++|++|+.||+|++|+++++
T Consensus 307 ~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 307 GKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred CCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 78889999999999999999999999999998763
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=320.18 Aligned_cols=252 Identities=17% Similarity=0.250 Sum_probs=195.7
Q ss_pred eccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccc-c-CCCCCeeEEEEcCC
Q 001248 354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALV-K-DPGVSVNRVIWSPD 431 (1114)
Q Consensus 354 ~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~-~h~~~V~~l~~spd 431 (1114)
..+|.+.|++++|+|+ +||+|+.|++|++||+.++...... .+ . +|...|.+++|+|+
T Consensus 10 ~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~-----------------~~~~~~h~~~v~~v~~sp~ 69 (330)
T 2hes_X 10 LKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLID-----------------VLDETAHKKAIRSVAWRPH 69 (330)
T ss_dssp EECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEE-----------------EECTTCCCSCEEEEEECTT
T ss_pred eccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEE-----------------EEecCCccCCEEEEEECCC
Confidence 3459999999999998 5999999999999999875321110 12 3 49999999999999
Q ss_pred CCeEEEEeCCCeEEEEEccCCc----eeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCC----ccee
Q 001248 432 GSLFGVAYSRHIVQIYSYHGGD----EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG----AKQY 503 (1114)
Q Consensus 432 g~~las~~~dg~i~iwd~~~~~----~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~----~~~~ 503 (1114)
+++||+|+.|++|+|||+.... .......+.+|...|.+++|+|+++ +|++|+.|++|++||+... +++.
T Consensus 70 ~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~~~~~~~ 147 (330)
T 2hes_X 70 TSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGEEYECIS 147 (330)
T ss_dssp SSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCCCCEEEE
T ss_pred CCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCCCeEEEE
Confidence 9999999999999999986432 1223346889999999999999999 7999999999999999432 4567
Q ss_pred EeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCC--CCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEE
Q 001248 504 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL--GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581 (1114)
Q Consensus 504 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~ 581 (1114)
.+.+|...|.+++|+++ +.+|++++.|++|++||.... .....+..|...|.+++|+|++.
T Consensus 148 ~~~~h~~~v~~v~~~p~--~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--------------- 210 (330)
T 2hes_X 148 VLQEHSQDVKHVIWHPS--EALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEG--------------- 210 (330)
T ss_dssp EECCCSSCEEEEEECSS--SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSS---------------
T ss_pred EeccCCCceEEEEECCC--CCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCC---------------
Confidence 88999999999998764 579999999999999998765 34456666776777766666521
Q ss_pred ecCCCCEEEEEeCCCeEEEEECCCc--------ceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 582 FDTTKNRFLAAGDDFSIKFWDMDSV--------QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 582 ~~~~~~~l~~~~~dg~i~iwd~~~~--------~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
+.++++++.|++|++||+..+ .....+.. .+...|.+++|++++ +|++++.||.|++|+..++
T Consensus 211 ----~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 211 ----VFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPD-VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp ----SCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCS-CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETT
T ss_pred ----eeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccc-ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence 346899999999999998654 23333332 135579999999765 7899999999999998655
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=337.15 Aligned_cols=342 Identities=17% Similarity=0.295 Sum_probs=264.7
Q ss_pred cccCCCCCe-eEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEE
Q 001248 415 LVKDPGVSV-NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 493 (1114)
Q Consensus 415 ~~~~h~~~V-~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~i 493 (1114)
.+.+|.+.| .++.+ ++++|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|++++ ++++|+.|++|++
T Consensus 116 ~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~---~~~~h~~~V~~l~~~~~~---~l~s~s~dg~i~v 187 (464)
T 3v7d_B 116 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRV 187 (464)
T ss_dssp EEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECSTT---EEEEEETTSCEEE
T ss_pred EEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEE---EEeCCCcCEEEEEEcCCC---EEEEEeCCCCEEE
Confidence 467898875 66555 67899999999999999999988665 688999999999999887 5899999999999
Q ss_pred EeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCC-eEEeee
Q 001248 494 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT-RTYQGF 572 (1114)
Q Consensus 494 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~-~~~~~~ 572 (1114)
||+.+++++..+.+|...|.+++|++.+++.++++++.|+.|++||+.+............ ...+...+++. ......
T Consensus 188 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 266 (464)
T 3v7d_B 188 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD-YPLVFHTPEENPYFVGVL 266 (464)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CC-SSEEESCGGGCTTEEEEE
T ss_pred EECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCC-cceEeeccCCCeEEEEEc
Confidence 9999999999999999999999998878889999999999999999987665443222211 11222223222 122222
Q ss_pred cccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCcc
Q 001248 573 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR 652 (1114)
Q Consensus 573 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~ 652 (1114)
......+.+++++++++++++.|+.|++||+.+++.+..+..| ...|.+++|+|+++++++++.||.|++||+.++ +
T Consensus 267 ~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~-~ 343 (464)
T 3v7d_B 267 RGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH--TDRIYSTIYDHERKRCISASMDTTIRIWDLENG-E 343 (464)
T ss_dssp CCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEEETTTTEEEEEETTSCEEEEETTTT-E
T ss_pred cCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC--CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-c
Confidence 2233344555788899999999999999999999999998766 457999999999999999999999999998766 2
Q ss_pred ceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEec
Q 001248 653 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT 732 (1114)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~ 732 (1114)
.+..+.
T Consensus 344 ~~~~~~-------------------------------------------------------------------------- 349 (464)
T 3v7d_B 344 LMYTLQ-------------------------------------------------------------------------- 349 (464)
T ss_dssp EEEEEC--------------------------------------------------------------------------
T ss_pred EEEEEe--------------------------------------------------------------------------
Confidence 222111
Q ss_pred cCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccC
Q 001248 733 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 812 (1114)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~ 812 (1114)
T Consensus 350 -------------------------------------------------------------------------------- 349 (464)
T 3v7d_B 350 -------------------------------------------------------------------------------- 349 (464)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc
Q 001248 813 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 891 (1114)
Q Consensus 813 ~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~ 891 (1114)
+|...|.+++++ +++|++++ ||+|++||+.++....... +...+..++|++ ++++|++|+ ||.|++||+.+
T Consensus 350 ---~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~-dg~i~iwd~~~ 421 (464)
T 3v7d_B 350 ---GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYV-SDNILVSGS-ENQFNIYNLRS 421 (464)
T ss_dssp ---CCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEE-CSSEEEEEE-TTEEEEEETTT
T ss_pred ---CCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEe-CCCEEEEec-CCeEEEEECCC
Confidence 144555666664 46777777 7888888887766554443 556788899999 899999998 89999999999
Q ss_pred ceEEEe-ecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001248 892 DEVKSK-LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 931 (1114)
Q Consensus 892 ~~~~~~-l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~ 931 (1114)
++.+.. +.+|...|++++|+ ++.++++++.|+.+.+|-+
T Consensus 422 g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 422 GKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp CCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred CcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEEe
Confidence 998876 67899999999997 4455666667776665543
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-34 Score=332.70 Aligned_cols=317 Identities=20% Similarity=0.324 Sum_probs=267.0
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw 494 (1114)
.+.+|.+.|.. +++++|++|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|+ +. ++++|+.|++|++|
T Consensus 113 ~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~~~dg~i~vw 184 (445)
T 2ovr_B 113 VLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMR--DN--IIISGSTDRTLKVW 184 (445)
T ss_dssp EEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEE--TT--EEEEEETTSCEEEE
T ss_pred EecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEE---EEcCCCCCEEEEEec--CC--EEEEEeCCCeEEEE
Confidence 46789887533 355579999999999999999999988665 688999999999998 45 79999999999999
Q ss_pred eCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecc
Q 001248 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1114)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~ 574 (1114)
|+.+++.+..+.+|...|.+++|+ +..+++++.||.|++||+.+.+....+..+...+.++.+ ++
T Consensus 185 d~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~--------- 249 (445)
T 2ovr_B 185 NAETGECIHTLYGHTSTVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DG--------- 249 (445)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CS---------
T ss_pred ECCcCcEEEEECCCCCcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CC---------
Confidence 999999999999999999999974 258999999999999999988877777777777766665 33
Q ss_pred cceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccce
Q 001248 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 654 (1114)
Q Consensus 575 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~ 654 (1114)
+++++++.||.|++||+.+++.+..+..+ ...|.+++| ++.++++++.||.|++||+.++ +..
T Consensus 250 ------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~-~~~ 312 (445)
T 2ovr_B 250 ------------RRVVSGAYDFMVKVWDPETETCLHTLQGH--TNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG-NCI 312 (445)
T ss_dssp ------------SCEEEEETTSCEEEEEGGGTEEEEEECCC--SSCEEEEEE--CSSEEEEEETTSCEEEEETTTC-CEE
T ss_pred ------------CEEEEEcCCCEEEEEECCCCcEeEEecCC--CCceEEEEE--CCCEEEEEeCCCeEEEEECCCC-CEE
Confidence 36999999999999999999999988765 447888888 8899999999999999998766 221
Q ss_pred eeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccC
Q 001248 655 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 734 (1114)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~ 734 (1114)
..+.+
T Consensus 313 ~~~~~--------------------------------------------------------------------------- 317 (445)
T 2ovr_B 313 HTLTG--------------------------------------------------------------------------- 317 (445)
T ss_dssp EEECC---------------------------------------------------------------------------
T ss_pred EEEcC---------------------------------------------------------------------------
Confidence 11100
Q ss_pred CCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCC
Q 001248 735 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 814 (1114)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~ 814 (1114)
T Consensus 318 -------------------------------------------------------------------------------- 317 (445)
T 2ovr_B 318 -------------------------------------------------------------------------------- 317 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCC---CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcc
Q 001248 815 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP---PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 890 (1114)
Q Consensus 815 ~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~---~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~ 890 (1114)
|...+.++.+ +++++++++ ||.|++||+.+++.+..+.. |...|++++|+ +++|++|+.||.|++||+.
T Consensus 318 --~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 318 --HQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN---KNFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp --CCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC---SSEEEEEETTSEEEEEETT
T ss_pred --CcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC---CCEEEEEeCCCeEEEEECC
Confidence 3333444444 466888888 89999999998888888775 78889999995 4699999999999999999
Q ss_pred cceEEEee-----cccccCeeEEEEcCCCCEEEEEeCCCc----EEEEeCCC
Q 001248 891 VDEVKSKL-----KGHSKRITGLAFSHALNVLVSSGADSQ----LCVWSSDG 933 (1114)
Q Consensus 891 ~~~~~~~l-----~~h~~~V~~l~~s~d~~~l~s~s~D~~----v~iwd~~~ 933 (1114)
+++.+..+ .+|.+.|++++|+|++.+|++|+.||+ |.|||++.
T Consensus 391 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 391 TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp TCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 99988887 578899999999999999999999998 99999986
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-36 Score=349.76 Aligned_cols=357 Identities=11% Similarity=0.046 Sum_probs=245.8
Q ss_pred CCCCeeEEEEcCCC---------CeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCC
Q 001248 419 PGVSVNRVIWSPDG---------SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK 489 (1114)
Q Consensus 419 h~~~V~~l~~spdg---------~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~ 489 (1114)
+.+.|.+|+|+|++ ++||+|+.++.. -..+|+++ ++++++.|+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------------------------~~~~~~~~--~laS~s~D~ 183 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------------------------EPLNEHLE--MFDKEKHSS 183 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------------CE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccC--------------------------Cccchhhh--hhccCCCCc
Confidence 46799999999987 899999866420 01368888 789999999
Q ss_pred CEEEEeCCCCcce----eEeeccccCEEEEeeccC----CCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEE
Q 001248 490 TIKVWDATNGAKQ----YIFEGHEAPVYSVCPHHK----ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAY 561 (1114)
Q Consensus 490 ~i~iwd~~~~~~~----~~~~~h~~~v~~~~~~~~----~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~ 561 (1114)
+|+|||+.++++. .++.+|.+.|.+++|++. +++.+|++++.||+|++||+.........
T Consensus 184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~------------ 251 (524)
T 2j04_B 184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHV------------ 251 (524)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSE------------
T ss_pred eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccc------------
Confidence 9999999887753 356778899999999986 44679999999999999999754321000
Q ss_pred ecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCc
Q 001248 562 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG 641 (1114)
Q Consensus 562 s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~ 641 (1114)
.+ ... +....+..| ...|.+++|++++ .|++|+.||+
T Consensus 252 ---------------------------~~-----------~~~--~p~~~l~~h--~~~v~sv~~s~~~-~lasgs~Dgt 288 (524)
T 2j04_B 252 ---------------------------FK-----------MCE--KPSLTLSLA--DSLITTFDFLSPT-TVVCGFKNGF 288 (524)
T ss_dssp ---------------------------EE-----------CCC--SCSEEECCT--TTCEEEEEESSSS-EEEEEETTSE
T ss_pred ---------------------------ce-----------eec--CceEEEEcC--CCCEEEEEecCCC-eEEEEeCCCE
Confidence 00 000 011223333 3478999999864 8999999999
Q ss_pred EEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCccccccc
Q 001248 642 IKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEE 721 (1114)
Q Consensus 642 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 721 (1114)
|++||+.++......+.
T Consensus 289 V~lWD~~~~~~~~~~~~--------------------------------------------------------------- 305 (524)
T 2j04_B 289 VAEFDLTDPEVPSFYDQ--------------------------------------------------------------- 305 (524)
T ss_dssp EEEEETTBCSSCSEEEE---------------------------------------------------------------
T ss_pred EEEEECCCCCCceEEee---------------------------------------------------------------
Confidence 99999865411100000
Q ss_pred CCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccC
Q 001248 722 SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ 801 (1114)
Q Consensus 722 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~ 801 (1114)
T Consensus 306 -------------------------------------------------------------------------------- 305 (524)
T 2j04_B 306 -------------------------------------------------------------------------------- 305 (524)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccccCCCCCCCCCccEE--EEeeCC-CEEEEEe-CCeEEEEEcCCCccccccCCCCC--CeEEEEEecCCCcEE
Q 001248 802 PPSGIMMTNDVTDSNPEEAVPCF--ALSKND-SYVMSAS-GGKISLFNMMTFKTMATFMPPPP--AATFLAFHPQDNNII 875 (1114)
Q Consensus 802 ~~~g~~~~~~~~~~~~~~~v~~v--~~s~d~-~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~--~i~~l~~sp~d~~~l 875 (1114)
+|...|.++ ++++++ .+||+++ |++|+|||+.+++++.++.+|.. .|.+++|+| ++..+
T Consensus 306 --------------~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp-~~~~l 370 (524)
T 2j04_B 306 --------------VHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCP-QIYSY 370 (524)
T ss_dssp --------------CSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEET-TTTEE
T ss_pred --------------cccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCC-CcCeE
Confidence 156667777 467777 7888888 89999999988887777766653 588999999 88899
Q ss_pred EEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCC--CCCCC
Q 001248 876 AIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR--TPTAQ 953 (1114)
Q Consensus 876 a~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~--~~~~~ 953 (1114)
++++.|++|++||+.++.++..+.+|.+.|++|+|+|+|++|++|+.|++|++||+... .+...... .....
T Consensus 371 ~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~------~~~~~~~~~~~~~~~ 444 (524)
T 2j04_B 371 IYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR------LLHGIKNSSATQKSL 444 (524)
T ss_dssp EEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS------TTTCC------CCCC
T ss_pred EEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh------hccccccCccceeee
Confidence 99999999999999999888889999999999999999999999999999999998652 11111110 00112
Q ss_pred CceEEEEccCCcEEEEEeCCeEEEEEcC-CCceeeeeecCCCCcCeeEEEECCCCC---EEEEEEcCCeEEEEEcCC
Q 001248 954 SDTRVQFHQDQIHFLVVHETQLAIFETT-KLECVKQWVPRESSAPITHATFSCDSQ---LVYACFLDATVCVFSAAN 1026 (1114)
Q Consensus 954 ~i~~v~fspdg~~l~~~~d~~i~iwd~~-~~~~~~~~~~~~h~~~v~~l~~s~dg~---~l~s~s~Dg~I~vwd~~~ 1026 (1114)
.+..++|+|+|..+.... .+.+|+.. ++.++..+. +|...|.+++|+|++. +||+|+.||.|+||++.-
T Consensus 445 ~v~~v~~sp~g~~~~~~~--~~~~~~~~~~g~~~~~l~--gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 445 RLWKWDYSIKDDKYRIDS--SYEVYPLTVNDVSKAKID--AHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp EEEECBCCSSSCEEEECC--CCCCCC---------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred EEEEeccCCCCCeEEccC--CceecccccCCcceeeec--CCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 457899999999653322 23344332 355555554 8899999999999964 999999999999999764
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-34 Score=318.95 Aligned_cols=307 Identities=18% Similarity=0.264 Sum_probs=248.5
Q ss_pred eeEecc-CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEc
Q 001248 351 VTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 429 (1114)
Q Consensus 351 ~~~~~~-h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 429 (1114)
+..+|. |.+.|++|+|+|++..+|+||+.||+|+|||+.+++..... ....+.+|...|.+++|+
T Consensus 30 l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~--------------~~~~l~~h~~~V~~~~~s 95 (340)
T 4aow_A 30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGI--------------PQRALRGHSHFVSDVVIS 95 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEE--------------EEEEECCCSSCEEEEEEC
T ss_pred EEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccce--------------eeEEEeCCCCCEEEEEEC
Confidence 344454 99999999999985436999999999999999876543211 112578999999999999
Q ss_pred CCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcce-eEeecc
Q 001248 430 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ-YIFEGH 508 (1114)
Q Consensus 430 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~h 508 (1114)
|||++|++++.|+.|++|+........ ....+...+..+.+++++. ++++++.|+.+++||+...... ..+.+|
T Consensus 96 ~dg~~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~~~~~~ 170 (340)
T 4aow_A 96 SDGQFALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTVQDESH 170 (340)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSSC
T ss_pred CCCCEEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEEEeccc
Confidence 999999999999999999999877554 5667888999999999999 7999999999999998765543 455789
Q ss_pred ccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCE
Q 001248 509 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 588 (1114)
Q Consensus 509 ~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~ 588 (1114)
...+..++|++.....++++++.|+.|++||+++......+..|...|.+++|+|+++ +
T Consensus 171 ~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~---------------------~ 229 (340)
T 4aow_A 171 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS---------------------L 229 (340)
T ss_dssp SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS---------------------E
T ss_pred cCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCC---------------------E
Confidence 9999999998888778999999999999999998877777777777777776666655 7
Q ss_pred EEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCC
Q 001248 589 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTS 668 (1114)
Q Consensus 589 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 668 (1114)
|++++.|+.|++||+.+.+.+..+..+. .+.+++|+|++.++ +++.|+.|++||+.++ .....+..+...
T Consensus 230 l~s~s~Dg~i~iwd~~~~~~~~~~~~~~---~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~-~~~~~~~~~~~~----- 299 (340)
T 4aow_A 230 CASGGKDGQAMLWDLNEGKHLYTLDGGD---IINALCFSPNRYWL-CAATGPSIKIWDLEGK-IIVDELKQEVIS----- 299 (340)
T ss_dssp EEEEETTCEEEEEETTTTEEEEEEECSS---CEEEEEECSSSSEE-EEEETTEEEEEETTTT-EEEEEECCC--------
T ss_pred EEEEeCCCeEEEEEeccCceeeeecCCc---eEEeeecCCCCcee-eccCCCEEEEEECCCC-eEEEecccccee-----
Confidence 9999999999999999999998887553 58999999988765 5566899999998876 333333211100
Q ss_pred CCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCcc
Q 001248 669 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN 748 (1114)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~ 748 (1114)
....
T Consensus 300 ----------------------------------------------------------------------------~~~~ 303 (340)
T 4aow_A 300 ----------------------------------------------------------------------------TSSK 303 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------------------------------------------------------eecc
Confidence 0002
Q ss_pred ccccceEEEEEccCcceeeecccCceEEEEeeccc
Q 001248 749 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRT 783 (1114)
Q Consensus 749 ~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~ 783 (1114)
.|...|.+++|+|+|++|++++.||.|+||++..+
T Consensus 304 ~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 304 AEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred CCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 37789999999999999999999999999998743
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-33 Score=359.65 Aligned_cols=491 Identities=14% Similarity=0.072 Sum_probs=351.8
Q ss_pred eeEeccCCCCceEEEEcCCCCeEEEEEecC------CcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCe-
Q 001248 351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNV------GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSV- 423 (1114)
Q Consensus 351 ~~~~~~h~~~v~~v~~spdg~~ll~tg~~d------g~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V- 423 (1114)
..++..|...|.+++|||||++ ||+++.+ ..|++||+.+++.. .+..|...+
T Consensus 45 ~~~lt~~~~~v~~~~~SPDG~~-la~~s~~~~~~~~~~i~~~d~~~g~~~--------------------~lt~~~~~~~ 103 (1045)
T 1k32_A 45 TRKIVSNLGVINNARFFPDGRK-IAIRVMRGSSLNTADLYFYNGENGEIK--------------------RITYFSGKST 103 (1045)
T ss_dssp EEEEECSSSEEEEEEECTTSSE-EEEEEEESTTCCEEEEEEEETTTTEEE--------------------ECCCCCEEEE
T ss_pred EEEeeeCCCcccCeEECCCCCE-EEEEEeeccCCCCCeEEEEECCCCCeE--------------------EcccCCCccc
Confidence 3455569999999999999997 5554332 37999999987643 267788888
Q ss_pred ------eEEEEcCCCCeEEEEeCC------CeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecC----
Q 001248 424 ------NRVIWSPDGSLFGVAYSR------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD---- 487 (1114)
Q Consensus 424 ------~~l~~spdg~~las~~~d------g~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~---- 487 (1114)
.+++|||||+++++++.+ ..|.+|++.+++... +..+ ....++|+| | ++++++.
T Consensus 104 ~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~--~~~~~~~sp-G---~l~~~~~~~~~ 173 (1045)
T 1k32_A 104 GRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP----LNLG--PATHILFAD-G---RRVIGRNTFEL 173 (1045)
T ss_dssp TTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE----CCSC--SCSEEEEET-T---EEEEEESCSCC
T ss_pred ccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEE----ecCC--CcceeeeCC-C---EEEEeccCCCc
Confidence 999999999977777644 358888888776432 3333 345788999 6 3566532
Q ss_pred --------CCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCC-CeeeecCCCCeeEE
Q 001248 488 --------DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTT 558 (1114)
Q Consensus 488 --------d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~ 558 (1114)
+...++|....+.....+.+|...+.++.|++ + .++++++.|+.+.+|.+.... ....+..+. .+..
T Consensus 174 ~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~--d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~ 249 (1045)
T 1k32_A 174 PHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVG--H-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYP 249 (1045)
T ss_dssp TTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEET--T-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCE
T ss_pred cccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeC--C-EEEEEEeccCceEEEEEeCCCCcceEecCCC-Ccce
Confidence 34566775444455666789999999999864 3 577788889999999876422 222222222 2333
Q ss_pred EEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCC---------CCCCcCeEEEc-C
Q 001248 559 MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG---------GLPASPRIRFN-K 628 (1114)
Q Consensus 559 ~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~~~v~~~~~s-~ 628 (1114)
.+|+||| ++++.+ .++.|++||..... +..+..+. +...+.+++|+ |
T Consensus 250 ~~~SpDG---------------------~~la~~-~~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~p 306 (1045)
T 1k32_A 250 RHLNTDG---------------------RRILFS-KGGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPL 306 (1045)
T ss_dssp EEEEESS---------------------SCEEEE-ETTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEEC
T ss_pred eeEcCCC---------------------CEEEEE-eCCEEEEecCCceE-eeeeccCcccccccccccccccceeeecCC
Confidence 3445544 456666 48999999995443 44554321 11258899999 9
Q ss_pred CCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCc
Q 001248 629 DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDV 708 (1114)
Q Consensus 629 d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (1114)
||+.|++++ ++.+.+|+..++. ... +.
T Consensus 307 dG~~la~~~-~~~i~~~~~~~~~-~~~-~~-------------------------------------------------- 333 (1045)
T 1k32_A 307 DGDLIAFVS-RGQAFIQDVSGTY-VLK-VP-------------------------------------------------- 333 (1045)
T ss_dssp GGGCEEEEE-TTEEEEECTTSSB-EEE-CS--------------------------------------------------
T ss_pred CCCEEEEEE-cCEEEEEcCCCCc-eEE-cc--------------------------------------------------
Confidence 999999888 7889999876552 111 10
Q ss_pred cccCCCcccccccCCCceeEEEeccCCCCccccccccCcccccc-ceEEEEEccCcceeeecccCceEE-EEeecccccC
Q 001248 709 RSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT-KISRLIFTNSGNAILALASNAIHL-LWKWQRTERN 786 (1114)
Q Consensus 709 ~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~-~i~~l~~s~~~~~l~~~~~dg~i~-vw~~~~~~~~ 786 (1114)
.+.. .+..++|+ +|+.++.++.++.+. +|++.
T Consensus 334 ----------------------------------------~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~----- 367 (1045)
T 1k32_A 334 ----------------------------------------EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYR----- 367 (1045)
T ss_dssp ----------------------------------------CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETT-----
T ss_pred ----------------------------------------CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECC-----
Confidence 1333 67888999 999898888877777 76654
Q ss_pred CCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEE
Q 001248 787 SSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFL 865 (1114)
Q Consensus 787 ~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l 865 (1114)
++.... +. ++...+..++|+|||++|++++ ++.|++||+.+++....+.+|...+.++
T Consensus 368 -----------------~~~~~~--l~--~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~ 426 (1045)
T 1k32_A 368 -----------------TGKAEK--FE--ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDF 426 (1045)
T ss_dssp -----------------TCCEEE--CC--CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCE
T ss_pred -----------------CCCceE--ec--CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccce
Confidence 222221 11 2677899999999999999998 7899999999998877777888899999
Q ss_pred EEecCCCcEEEEEeCCC----------cEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 001248 866 AFHPQDNNIIAIGMDDS----------SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE 935 (1114)
Q Consensus 866 ~~sp~d~~~la~g~~dg----------~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~ 935 (1114)
+||| ||++||+++.++ .|++||+.+++ +..+..|...+.+++|+|||++|++++.++...+|+.....
T Consensus 427 ~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~ 504 (1045)
T 1k32_A 427 TISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLN 504 (1045)
T ss_dssp EECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSC
T ss_pred EECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccc
Confidence 9999 899888887654 99999999887 67788898899999999999999999998888888754322
Q ss_pred cccc---------------cc--c-----------ccCCC-------CCCCCCCceEEEEccCCcEEEE-----------
Q 001248 936 KQKN---------------RF--L-----------QIPTG-------RTPTAQSDTRVQFHQDQIHFLV----------- 969 (1114)
Q Consensus 936 ~~~~---------------~~--~-----------~~~~~-------~~~~~~~i~~v~fspdg~~l~~----------- 969 (1114)
.... .. + -...+ .....+.+..++|+|||+++++
T Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~ 584 (1045)
T 1k32_A 505 FSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYY 584 (1045)
T ss_dssp EECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHH
T ss_pred cccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccc
Confidence 1000 00 0 00000 0011245788999999998874
Q ss_pred -E--eCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCe
Q 001248 970 -V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1028 (1114)
Q Consensus 970 -~--~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~ 1028 (1114)
+ ....+.+||+.+++..... ..+.+++|||||++|++++.| .|++||+.+++
T Consensus 585 ~~~~~~~~l~~~d~~~~~~~~l~------~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 585 QGAPEKGVLLKYDVKTRKVTEVK------NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp HCCCCCEEEEEEETTTCCEEEEE------EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred cccCCCceEEEEECCCCcEEEee------cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 1 2447889999888764332 468899999999999999866 89999998877
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=321.07 Aligned_cols=291 Identities=13% Similarity=0.167 Sum_probs=224.0
Q ss_pred ccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEee
Q 001248 749 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 828 (1114)
Q Consensus 749 ~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~ 828 (1114)
+|...|.++.|+++ .|++++.|+.|++|++..... ..... +...+|...|.+++|+|
T Consensus 12 ~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~--------------------~~~~~-~~~~~h~~~v~~v~~sp 68 (330)
T 2hes_X 12 LYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF--------------------TLIDV-LDETAHKKAIRSVAWRP 68 (330)
T ss_dssp CCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC--------------------EEEEE-ECTTCCCSCEEEEEECT
T ss_pred cCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe--------------------EEEEE-EecCCccCCEEEEEECC
Confidence 48899999999988 899999999999999753210 01110 11113888999999999
Q ss_pred CCCEEEEEe-CCeEEEEEcCC-------CccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc----ceEEE
Q 001248 829 NDSYVMSAS-GGKISLFNMMT-------FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV----DEVKS 896 (1114)
Q Consensus 829 d~~~l~~~~-dg~i~iwd~~~-------~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~----~~~~~ 896 (1114)
++++|++++ |++|++||+.. .+.+..+.+|...|.+++|+| ++++||+|+.|++|++||+.. .+++.
T Consensus 69 ~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~~ 147 (330)
T 2hes_X 69 HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECIS 147 (330)
T ss_dssp TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEEE
T ss_pred CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEEE
Confidence 999999999 99999999853 345667889999999999999 899999999999999999943 35678
Q ss_pred eecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccC--CcEEEE-EeCC
Q 001248 897 KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD--QIHFLV-VHET 973 (1114)
Q Consensus 897 ~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspd--g~~l~~-~~d~ 973 (1114)
.+.+|...|++++|+|++.+|++++.|++|++||+.++. ..++....+|. ..|.+++|+|+ +.+|++ +.|+
T Consensus 148 ~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~---~~~~~~~~~h~---~~v~~~~~~~~~~~~~l~s~s~D~ 221 (330)
T 2hes_X 148 VLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD---WECVAVLNGHE---GTVWSSDFDKTEGVFRLCSGSDDS 221 (330)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE---EEEEEEECCCS---SCEEEEEECCSSSSCEEEEEETTS
T ss_pred EeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC---eeEEEEccCCC---CcEEEEEecCCCCeeEEEEEeCCC
Confidence 899999999999999999999999999999999987642 12344556665 48999999999 778888 6899
Q ss_pred eEEEEEcCCC--------ceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCee--eEEeCCCcccCCCC
Q 001248 974 QLAIFETTKL--------ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL--RCRINPSAYLPAGV 1043 (1114)
Q Consensus 974 ~i~iwd~~~~--------~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~--~~~~~~~~~~~~~~ 1043 (1114)
.|++||+.++ .+...+. ..|...|.+++|++++ +|++++.||.|+|||..+++. ..... .+|
T Consensus 222 ~v~iw~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~------~~h 293 (330)
T 2hes_X 222 TVRVWKYMGDDEDDQQEWVCEAILP-DVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRA------LCH 293 (330)
T ss_dssp CEEEEEEEEECTTSCEEEEEEEECC-SCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEES------CTT
T ss_pred eEEEEEecCCCccccceeEEeeecc-cccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccc------ccc
Confidence 9999998765 2222222 3489999999999765 899999999999999988743 32221 133
Q ss_pred CCCCccceEEEecCC-CCCeEEEEeCCCcEEEEeccC
Q 001248 1044 SSSNVHPLVIAAHPQ-EPNEFALGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1044 ~~~~v~~~~~~~~~~-d~~~l~s~~~Dg~v~vW~i~~ 1079 (1114)
....+. +++|+|. ++++|++|+.||+|++|++.+
T Consensus 294 ~~~~v~--~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 294 GVYEIN--VVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TTSCEE--EEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ccceEE--EEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 232355 8899985 578999999999999999865
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-34 Score=317.99 Aligned_cols=211 Identities=19% Similarity=0.294 Sum_probs=178.1
Q ss_pred cccCCCCCeeEEEEcCC-CCeEEEEeCCCeEEEEEccCCcee--eeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCE
Q 001248 415 LVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHGGDEV--RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 491 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spd-g~~las~~~dg~i~iwd~~~~~~~--~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i 491 (1114)
+|.||.+.|++|+|+|+ +++||+|+.|++|+|||+.+++.. .....+.+|...|.+++|+|+++ +|++++.|+.|
T Consensus 33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~--~l~s~~~d~~i 110 (340)
T 4aow_A 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ--FALSGSWDGTL 110 (340)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC--EEEEEcccccc
Confidence 58899999999999997 689999999999999999876432 23446889999999999999999 79999999999
Q ss_pred EEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCee-eecCCCCeeEEEEEecCCCeEEe
Q 001248 492 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQ 570 (1114)
Q Consensus 492 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~g~~~~~ 570 (1114)
++|+...+........+...+..+.+.+ ++.++++++.|+.+++||+....... ....+...+..+++++++.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~---- 184 (340)
T 4aow_A 111 RLWDLTTGTTTRRFVGHTKDVLSVAFSS--DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS---- 184 (340)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSS----
T ss_pred eEEeecccceeeeecCCCCceeEEEEee--cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCC----
Confidence 9999999998888888888888888654 44789999999999999987644332 3344556666666665543
Q ss_pred eecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 571 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
..++++++.|+.|++||+.+++.+..+..| ...|.+++|+|++++|++++.||.|++||+.+.
T Consensus 185 ---------------~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h--~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~ 247 (340)
T 4aow_A 185 ---------------NPIIVSCGWDKLVKVWNLANCKLKTNHIGH--TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG 247 (340)
T ss_dssp ---------------SCEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred ---------------CcEEEEEcCCCEEEEEECCCCceeeEecCC--CCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC
Confidence 235788999999999999999999988866 457999999999999999999999999998765
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-33 Score=326.68 Aligned_cols=319 Identities=16% Similarity=0.285 Sum_probs=264.2
Q ss_pred EeccCCCCc-eEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCC
Q 001248 353 RTLNQGSSP-MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 431 (1114)
Q Consensus 353 ~~~~h~~~v-~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd 431 (1114)
...+|.+.| +| ++++|++ |++|+.||+|++||+.+++.+. .+.+|.+.|.+++|+
T Consensus 113 ~l~~h~~~v~~~--~~~~g~~-l~sg~~dg~i~vwd~~~~~~~~-------------------~~~~h~~~v~~~~~~-- 168 (445)
T 2ovr_B 113 VLKGHDDHVITC--LQFCGNR-IVSGSDDNTLKVWSAVTGKCLR-------------------TLVGHTGGVWSSQMR-- 168 (445)
T ss_dssp EEECSTTSCEEE--EEEETTE-EEEEETTSCEEEEETTTCCEEE-------------------ECCCCSSCEEEEEEE--
T ss_pred EecccCCCcEEE--EEEcCCE-EEEEECCCcEEEEECCCCcEEE-------------------EEcCCCCCEEEEEec--
Confidence 444588875 55 5556884 9999999999999999998776 378999999999997
Q ss_pred CCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccC
Q 001248 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 511 (1114)
Q Consensus 432 g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 511 (1114)
+++|++|+.||+|++||+.+++.+. .+.+|...|.+++|+ ++ .+++|+.|++|++||+.+++.+..+.+|...
T Consensus 169 ~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~ 241 (445)
T 2ovr_B 169 DNIIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLH--EK--RVVSGSRDATLRVWDIETGQCLHVLMGHVAA 241 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEESSSCCEEEEEECCSSC
T ss_pred CCEEEEEeCCCeEEEEECCcCcEEE---EECCCCCcEEEEEec--CC--EEEEEeCCCEEEEEECCCCcEEEEEcCCccc
Confidence 6799999999999999999988665 688999999999995 45 6999999999999999999999999999999
Q ss_pred EEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEE
Q 001248 512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 591 (1114)
Q Consensus 512 v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~ 591 (1114)
|.++++ ++.++++++.||.|++||+++......+..+...+.++.+ ++ .++++
T Consensus 242 v~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~---------------------~~l~~ 294 (445)
T 2ovr_B 242 VRCVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DG---------------------IHVVS 294 (445)
T ss_dssp EEEEEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CS---------------------SEEEE
T ss_pred EEEEEE----CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CC---------------------CEEEE
Confidence 999987 4478999999999999999988777777777777776665 33 47999
Q ss_pred EeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCC
Q 001248 592 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS 671 (1114)
Q Consensus 592 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1114)
++.|+.|++||+.+++.+..+..+. ..+.++.+ +++++++++.||.|++||+.++ +....+..+
T Consensus 295 ~~~d~~i~i~d~~~~~~~~~~~~~~--~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~----------- 358 (445)
T 2ovr_B 295 GSLDTSIRVWDVETGNCIHTLTGHQ--SLTSGMEL--KDNILVSGNADSTVKIWDIKTG-QCLQTLQGP----------- 358 (445)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCC--SCEEEEEE--ETTEEEEEETTSCEEEEETTTC-CEEEEECST-----------
T ss_pred EeCCCeEEEEECCCCCEEEEEcCCc--ccEEEEEE--eCCEEEEEeCCCeEEEEECCCC-cEEEEEccC-----------
Confidence 9999999999999999999887664 35655555 6789999999999999998766 222211100
Q ss_pred CCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccc
Q 001248 672 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRA 751 (1114)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 751 (1114)
T Consensus 359 -------------------------------------------------------------------------------- 358 (445)
T 2ovr_B 359 -------------------------------------------------------------------------------- 358 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCC
Q 001248 752 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 831 (1114)
Q Consensus 752 ~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~ 831 (1114)
..|...|.+++++ ++
T Consensus 359 ---------------------------------------------------------------~~~~~~v~~~~~~--~~ 373 (445)
T 2ovr_B 359 ---------------------------------------------------------------NKHQSAVTCLQFN--KN 373 (445)
T ss_dssp ---------------------------------------------------------------TSCSSCEEEEEEC--SS
T ss_pred ---------------------------------------------------------------CCCCCCEEEEEEC--CC
Confidence 0145567777774 56
Q ss_pred EEEEEe-CCeEEEEEcCCCcccccc-----CCCCCCeEEEEEecCCCcEEEEEeCCCc----EEEEEccc
Q 001248 832 YVMSAS-GGKISLFNMMTFKTMATF-----MPPPPAATFLAFHPQDNNIIAIGMDDSS----IQIYNVRV 891 (1114)
Q Consensus 832 ~l~~~~-dg~i~iwd~~~~~~~~~~-----~~~~~~i~~l~~sp~d~~~la~g~~dg~----v~iwd~~~ 891 (1114)
+|++++ ||.|++||+.+++.+..+ ..+...|.+++|+| ++.++|+|+.||+ |.+||+..
T Consensus 374 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 374 FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS-SEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecC-CEEEEEEcccCCCCccEEEEEECCC
Confidence 888888 889999999888887776 46788899999999 9999999999998 99999864
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-35 Score=343.52 Aligned_cols=386 Identities=14% Similarity=0.190 Sum_probs=283.2
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEee-ccccCCeeEEEecC-CCCeeEEEEecCCCCEEEEeCCC---Cc-
Q 001248 427 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEI-DAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATN---GA- 500 (1114)
Q Consensus 427 ~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l-~~h~~~V~~v~~s~-d~~~~~l~s~~~d~~i~iwd~~~---~~- 500 (1114)
.|+|+++.+++++ .|+. +++.+. .+ .+|.+.|++++|+| +++ +|++|+.|++|++||+.+ +.
T Consensus 34 ~f~~~~~~~~~~~------~w~~-~g~~~~---~~~~~h~~~V~~~~~s~~~~~--~l~s~s~dg~v~vwd~~~~~~~~~ 101 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNL-RGKLIA---TLMENEPNSITSSAVSPGETP--YLITGSDQGVIKIWNLKEIIVGEV 101 (437)
T ss_dssp GGCCCCCCCCCCC------GGGC-CCCEEE---EECTTTTSCEEEEEEECSSSC--EEEEEETTSEEEEEEHHHHHTTCC
T ss_pred hcCCccccccccc------cccc-cceEEe---eeccCCCCceEEEEECCCCCC--EEEEecCCceEEEeECcccccCcc
Confidence 4788888888765 3774 344444 56 78999999999999 998 799999999999999877 43
Q ss_pred --ceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcC---CCCCeeeecCCCCeeEEEEEecCCCeEEeeeccc
Q 001248 501 --KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD---NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 575 (1114)
Q Consensus 501 --~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~---~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~ 575 (1114)
....+ +|...|.+++|++ ++.+|++++.||.|++||++ .+........+ .+..+.+++++ ...
T Consensus 102 ~~~~~~~-~h~~~v~~~~~~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~-------~~~ 169 (437)
T 3gre_A 102 YSSSLTY-DCSSTVTQITMIP--NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRKINLKNFG-------KNE 169 (437)
T ss_dssp CSCSEEE-ECSSCEEEEEECT--TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEEEEGGGGS-------SCC
T ss_pred cceeeec-cCCCCEEEEEEeC--CCCEEEEEeCCCEEEEEEeccccCCceeeccccc--eeEEEEccCcc-------ccc
Confidence 23333 4999999999875 55799999999999999995 44444433333 67777777643 122
Q ss_pred ceeEEE--ecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccc
Q 001248 576 SLGVVQ--FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL 653 (1114)
Q Consensus 576 ~v~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~ 653 (1114)
.+.++. ++++++++++++.|+.|++||+.+++.+..+..+.+...|.+++|+|++++|++++.||.|++||+.++ ..
T Consensus 170 ~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~ 248 (437)
T 3gre_A 170 YAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN-VL 248 (437)
T ss_dssp CEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT-EE
T ss_pred CceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc-cE
Confidence 445555 668899999999999999999999999999987434558999999999999999999999999998765 22
Q ss_pred eeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEecc
Q 001248 654 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 733 (1114)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~ 733 (1114)
+..+..
T Consensus 249 ~~~~~~-------------------------------------------------------------------------- 254 (437)
T 3gre_A 249 IRSWSF-------------------------------------------------------------------------- 254 (437)
T ss_dssp EEEEBC--------------------------------------------------------------------------
T ss_pred EEEEec--------------------------------------------------------------------------
Confidence 221100
Q ss_pred CCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCC
Q 001248 734 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 813 (1114)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~ 813 (1114)
.+...|.+++++|.
T Consensus 255 ---------------~~~~~v~~~~~~~~--------------------------------------------------- 268 (437)
T 3gre_A 255 ---------------GDHAPITHVEVCQF--------------------------------------------------- 268 (437)
T ss_dssp ---------------TTCEEEEEEEECTT---------------------------------------------------
T ss_pred ---------------CCCCceEEEEeccc---------------------------------------------------
Confidence 02233444443322
Q ss_pred CCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc
Q 001248 814 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 892 (1114)
Q Consensus 814 ~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~ 892 (1114)
|++++++|++++ ||.|++||+.+++.+..+.+|...+..+.|+| +++.+ .+.
T Consensus 269 ------------~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l----~~~---------- 321 (437)
T 3gre_A 269 ------------YGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLP-IEKGL----EEL---------- 321 (437)
T ss_dssp ------------TCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSC-BCSSG----GGC----------
T ss_pred ------------cCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecc-ccccc----ccc----------
Confidence 235677888888 89999999999999999999999999999999 65554 111
Q ss_pred eEEEeecc--cccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE
Q 001248 893 EVKSKLKG--HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 970 (1114)
Q Consensus 893 ~~~~~l~~--h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~ 970 (1114)
.+.+ |...|++++|+ ++++|++++.|++|++||+.+++.. ....++...........++++..+++..
T Consensus 322 ----~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (437)
T 3gre_A 322 ----NFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSS-----KAVISPSRFSDVFIPTQVTANLTMLLRK 391 (437)
T ss_dssp ----CCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGC-----EEEECC--CCCEEEEEEEETTEEEEEEE
T ss_pred ----eecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccc-----eEEecccccCceEEEEEeecceEEEEEe
Confidence 1445 99999999999 8899999999999999999986542 2333333222345666677766665544
Q ss_pred eCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCC--CCEEEEEEcCCeEEEEE
Q 001248 971 HETQLAIFETTKLECVKQWVPRESSAPITHATFSCD--SQLVYACFLDATVCVFS 1023 (1114)
Q Consensus 971 ~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~d--g~~l~s~s~Dg~I~vwd 1023 (1114)
|+.......... ..|...|++++|+++ +.+|++|+.||.|+||+
T Consensus 392 -------~~~~~~~~~~~~--~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 392 -------MKRTSTHSVDDS--LYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp -------CC---------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred -------cccccccccCcc--cccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 223333333222 368999999999998 78999999999999995
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-33 Score=326.58 Aligned_cols=318 Identities=15% Similarity=0.247 Sum_probs=263.5
Q ss_pred EeccCCCCc-eEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCC
Q 001248 353 RTLNQGSSP-MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 431 (1114)
Q Consensus 353 ~~~~h~~~v-~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd 431 (1114)
...+|.+.| .|+.| +++ +|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|+|+
T Consensus 116 ~l~~h~~~v~~~~~~--~~~-~l~sgs~dg~i~vwd~~~~~~~~-------------------~~~~h~~~V~~l~~~~~ 173 (464)
T 3v7d_B 116 TLRGHMTSVITCLQF--EDN-YVITGADDKMIRVYDSINKKFLL-------------------QLSGHDGGVWALKYAHG 173 (464)
T ss_dssp EEECCSSSCEEEEEE--ETT-EEEEEETTSCEEEEETTTTEEEE-------------------EECCCSSCEEEEEECST
T ss_pred EEcCCCCCcEEEEEE--CCC-EEEEEcCCCcEEEEECCCCcEEE-------------------EEeCCCcCEEEEEEcCC
Confidence 444588775 66666 456 59999999999999999998776 37799999999999999
Q ss_pred CCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecC--CCCeeEEEEecCCCCEEEEeCCCCcc--------
Q 001248 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH--PNKQLCVITCGDDKTIKVWDATNGAK-------- 501 (1114)
Q Consensus 432 g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~--d~~~~~l~s~~~d~~i~iwd~~~~~~-------- 501 (1114)
+ +|++|+.||+|++||+.+++.+. .+.+|...|.+++|++ ++. ++++|+.|++|++||+.++..
T Consensus 174 ~-~l~s~s~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~--~l~s~s~d~~i~vwd~~~~~~~~~~~~~~ 247 (464)
T 3v7d_B 174 G-ILVSGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPDHGEEH 247 (464)
T ss_dssp T-EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEEESSSCE--EEEEEETTSCEEEEECCCCCCC------C
T ss_pred C-EEEEEeCCCCEEEEECCCCcEEE---EECCCCCccEEEEEecCCCCC--EEEEEcCCCcEEEeeCCCCcccccccccC
Confidence 8 99999999999999999988665 6889999999999994 556 799999999999999987653
Q ss_pred ---------------eeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCC
Q 001248 502 ---------------QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT 566 (1114)
Q Consensus 502 ---------------~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~ 566 (1114)
+..+.+|...|.++. +++.++++++.|+.|++||+.+.+....+..|...|.+++|+|++.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 323 (464)
T 3v7d_B 248 DYPLVFHTPEENPYFVGVLRGHMASVRTVS----GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK 323 (464)
T ss_dssp CSSEEESCGGGCTTEEEEECCCSSCEEEEE----EETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTT
T ss_pred CcceEeeccCCCeEEEEEccCccceEEEEc----CCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCC
Confidence 456788999998875 3447999999999999999998877777777777777776666654
Q ss_pred eEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEE
Q 001248 567 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA 646 (1114)
Q Consensus 567 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd 646 (1114)
++++++.||.|++||+.+++.+..+..|. ..|.+++|+ +.+|++++.||.|++||
T Consensus 324 ---------------------~l~sg~~dg~i~vwd~~~~~~~~~~~~h~--~~v~~~~~~--~~~l~s~s~dg~v~vwd 378 (464)
T 3v7d_B 324 ---------------------RCISASMDTTIRIWDLENGELMYTLQGHT--ALVGLLRLS--DKFLVSAAADGSIRGWD 378 (464)
T ss_dssp ---------------------EEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred ---------------------EEEEEeCCCcEEEEECCCCcEEEEEeCCC--CcEEEEEEc--CCEEEEEeCCCcEEEEE
Confidence 79999999999999999999999998664 478899987 58999999999999999
Q ss_pred ccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCce
Q 001248 647 TSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKS 726 (1114)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 726 (1114)
+.++..... .
T Consensus 379 ~~~~~~~~~-~--------------------------------------------------------------------- 388 (464)
T 3v7d_B 379 ANDYSRKFS-Y--------------------------------------------------------------------- 388 (464)
T ss_dssp TTTCCEEEE-E---------------------------------------------------------------------
T ss_pred CCCCceeee-e---------------------------------------------------------------------
Confidence 865411000 0
Q ss_pred eEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCc
Q 001248 727 KVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI 806 (1114)
Q Consensus 727 ~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~ 806 (1114)
T Consensus 389 -------------------------------------------------------------------------------- 388 (464)
T 3v7d_B 389 -------------------------------------------------------------------------------- 388 (464)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCCCCCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccc-cCCCCCCeEEEEEecCCCcEEEEEeCCCcEE
Q 001248 807 MMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQ 885 (1114)
Q Consensus 807 ~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~ 885 (1114)
.+...+..++++++++++++++||.|++||+.+++.+.. +..|...|.+++|+ ++.++++++.||.+.
T Consensus 389 ---------~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~~g~~~ 457 (464)
T 3v7d_B 389 ---------HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFK--GKTLVAAVEKDGQSF 457 (464)
T ss_dssp ---------ECTTCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEESCTTTTCSEEEEEEEE--TTEEEEEEEETTEEE
T ss_pred ---------cCCCCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEehhhccCCCcEEEEEec--CCEEEEEEEeCCeEE
Confidence 033445678899999999999999999999999998876 67788999999997 467777788888766
Q ss_pred EEE
Q 001248 886 IYN 888 (1114)
Q Consensus 886 iwd 888 (1114)
+|-
T Consensus 458 i~~ 460 (464)
T 3v7d_B 458 LEI 460 (464)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=319.12 Aligned_cols=302 Identities=16% Similarity=0.247 Sum_probs=252.1
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw 494 (1114)
.+.+|.+.|++++|+|+|++|++++.||.|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---TLDGHTGTIWSIDVDCFTK--YCVTGSADYSIKLW 101 (369)
T ss_dssp EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTTEEEEE
T ss_pred EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh---hhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEEEE
Confidence 578999999999999999999999999999999999988665 6889999999999999999 79999999999999
Q ss_pred eCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecC-----CeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEE
Q 001248 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD-----GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY 569 (1114)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~ 569 (1114)
|+.+++.+..+. |...|.+++|++ ++.++++++.+ +.|++||+........+
T Consensus 102 d~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~-------------------- 158 (369)
T 3zwl_B 102 DVSNGQCVATWK-SPVPVKRVEFSP--CGNYFLAILDNVMKNPGSINIYEIERDSATHEL-------------------- 158 (369)
T ss_dssp ETTTCCEEEEEE-CSSCEEEEEECT--TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCE--------------------
T ss_pred ECCCCcEEEEee-cCCCeEEEEEcc--CCCEEEEecCCccCCCCEEEEEEecCCccceee--------------------
Confidence 999999999888 889999999865 55799999988 99999998754322110
Q ss_pred eeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccC
Q 001248 570 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 649 (1114)
Q Consensus 570 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~ 649 (1114)
.. .....+..+..+.....+.+++|+|++++|++++.||.|++||+.+
T Consensus 159 --------------------~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 206 (369)
T 3zwl_B 159 --------------------TK------------VSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSN 206 (369)
T ss_dssp --------------------EE------------ECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTT
T ss_pred --------------------cc------------cccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCC
Confidence 00 0111222333333334689999999999999999999999999865
Q ss_pred CccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEE
Q 001248 650 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW 729 (1114)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw 729 (1114)
.......+.
T Consensus 207 ~~~~~~~~~----------------------------------------------------------------------- 215 (369)
T 3zwl_B 207 NYEYVDSID----------------------------------------------------------------------- 215 (369)
T ss_dssp TTEEEEEEE-----------------------------------------------------------------------
T ss_pred CcEeEEEEe-----------------------------------------------------------------------
Confidence 311111110
Q ss_pred EeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCcccc
Q 001248 730 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 809 (1114)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~ 809 (1114)
T Consensus 216 -------------------------------------------------------------------------------- 215 (369)
T 3zwl_B 216 -------------------------------------------------------------------------------- 215 (369)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCC------
Q 001248 810 NDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS------ 882 (1114)
Q Consensus 810 ~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg------ 882 (1114)
.|...|.+++|+|++++|++++ |+.|++||+.+++.+..+. +...+.+++|+| ++.++++++.++
T Consensus 216 ------~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~ 287 (369)
T 3zwl_B 216 ------LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITP-LKEFIILGGGQEAKDVTT 287 (369)
T ss_dssp ------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECS-SSSEEEEEECCC------
T ss_pred ------cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecC-CCceEEEeecCCCceEEE
Confidence 1556677888888888888888 8899999998888887777 677899999999 899999999888
Q ss_pred --------cEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 001248 883 --------SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE 935 (1114)
Q Consensus 883 --------~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~ 935 (1114)
.+++||+.+++.+..+.+|...|++++|+|++++|++++.||+|++|+++.+.
T Consensus 288 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 288 TSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp -------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred EecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 89999999999999999999999999999999999999999999999998743
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=346.80 Aligned_cols=259 Identities=21% Similarity=0.308 Sum_probs=214.9
Q ss_pred eccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCC
Q 001248 354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 433 (1114)
Q Consensus 354 ~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 433 (1114)
..+|.+.|++++|+|++..+|+||+.||+|+|||+.++.... ......+.+|...|.+++|+|+|+
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~--------------~~~~~~~~~h~~~v~~v~~s~~g~ 443 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY--------------GVAQRRLTGHSHFVEDVVLSSDGQ 443 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS--------------CEEEEEEECCSSCEEEEEECTTSS
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc--------------ccccceecCCCCcEEEEEECCCCC
Confidence 345999999999999876579999999999999997643211 001114789999999999999999
Q ss_pred eEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEe---ecccc
Q 001248 434 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF---EGHEA 510 (1114)
Q Consensus 434 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~~h~~ 510 (1114)
+|++|+.||+|+|||+.++.... .+.+|...|.+++|+|+++ +|++|+.|++|++||+......... .+|..
T Consensus 444 ~l~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~ 518 (694)
T 3dm0_A 444 FALSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGEGHRD 518 (694)
T ss_dssp EEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTTSCSS
T ss_pred EEEEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCCCCCC
Confidence 99999999999999999987665 6889999999999999999 7999999999999997654332222 46899
Q ss_pred CEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEE
Q 001248 511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 590 (1114)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~ 590 (1114)
.|.+++|++......+++++.|++|++||+++......+..|...|.+++|+|+++ +|+
T Consensus 519 ~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~---------------------~l~ 577 (694)
T 3dm0_A 519 WVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGS---------------------LCA 577 (694)
T ss_dssp CEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS---------------------EEE
T ss_pred cEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCC---------------------EEE
Confidence 99999998876557899999999999999998877777777777777776666665 799
Q ss_pred EEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeec
Q 001248 591 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657 (1114)
Q Consensus 591 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 657 (1114)
+++.||.|++||+.+++.+..+..+ ..+.+++|+|++.++++++ ++.|++||+.++ ..+..+
T Consensus 578 sg~~Dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~-~~~~~~ 639 (694)
T 3dm0_A 578 SGGKDGVVLLWDLAEGKKLYSLEAN---SVIHALCFSPNRYWLCAAT-EHGIKIWDLESK-SIVEDL 639 (694)
T ss_dssp EEETTSBCEEEETTTTEEEECCBCS---SCEEEEEECSSSSEEEEEE-TTEEEEEETTTT-EEEEEE
T ss_pred EEeCCCeEEEEECCCCceEEEecCC---CcEEEEEEcCCCcEEEEEc-CCCEEEEECCCC-CChhhh
Confidence 9999999999999999988777643 3589999999999888776 466999999887 444444
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-34 Score=326.30 Aligned_cols=318 Identities=14% Similarity=0.197 Sum_probs=219.2
Q ss_pred cccCCCCCeeEEEEcCC----CCeEEEEeCCCeEEEEEccCCceeeeeEeec--cccCCeeEEEecCC----CCeeEEEE
Q 001248 415 LVKDPGVSVNRVIWSPD----GSLFGVAYSRHIVQIYSYHGGDEVRQHLEID--AHVGGVNDIAFSHP----NKQLCVIT 484 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spd----g~~las~~~dg~i~iwd~~~~~~~~~~~~l~--~h~~~V~~v~~s~d----~~~~~l~s 484 (1114)
+..+|.+.|.+++|+|+ ...+++++.++.|++||+.+++.+.....+. .|...|.+++|+|+ +. +|++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~l~~ 90 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP--LLAV 90 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE--EEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC--EEEE
Confidence 46789999999999984 4556666667799999999887766443332 26788999999999 55 7999
Q ss_pred ecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeee---cCCCCeeEEEEE
Q 001248 485 CGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY---EAPGRWCTTMAY 561 (1114)
Q Consensus 485 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~---~~~~~~v~~~~~ 561 (1114)
|+.|+.|++||+.+++.+..+.+|...|.+++|++. ++.+|++++.||.|++||+++.+....+ ..+...
T Consensus 91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------ 163 (366)
T 3k26_A 91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE------ 163 (366)
T ss_dssp EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSC------
T ss_pred ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCc------
Confidence 999999999999999999999999999999998762 4479999999999999999875544433 223333
Q ss_pred ecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCc
Q 001248 562 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG 641 (1114)
Q Consensus 562 s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~ 641 (1114)
|.+++|+|++++|++++.||.
T Consensus 164 -----------------------------------------------------------v~~~~~~~~~~~l~~~~~dg~ 184 (366)
T 3k26_A 164 -----------------------------------------------------------VLSADYDLLGEKIMSCGMDHS 184 (366)
T ss_dssp -----------------------------------------------------------EEEEEECTTSSEEEEEETTSC
T ss_pred -----------------------------------------------------------eeEEEECCCCCEEEEecCCCC
Confidence 334444444444444444444
Q ss_pred EEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCccccccc
Q 001248 642 IKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEE 721 (1114)
Q Consensus 642 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 721 (1114)
|++||+.++ +....+.... .+.+.+
T Consensus 185 i~i~d~~~~-~~~~~~~~~~------------~~~~~~------------------------------------------ 209 (366)
T 3k26_A 185 LKLWRINSK-RMMNAIKESY------------DYNPNK------------------------------------------ 209 (366)
T ss_dssp EEEEESCSH-HHHHHHHHHH------------TCCGGG------------------------------------------
T ss_pred EEEEECCCC-ccccccceeE------------EecCCC------------------------------------------
Confidence 555544433 1111111000 000000
Q ss_pred CCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccC
Q 001248 722 SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ 801 (1114)
Q Consensus 722 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~ 801 (1114)
..+...........+.
T Consensus 210 ------------------------------------------~~~~~~~~~~~~~~~~---------------------- 225 (366)
T 3k26_A 210 ------------------------------------------TNRPFISQKIHFPDFS---------------------- 225 (366)
T ss_dssp ------------------------------------------CSSCCCCEEECCCSEE----------------------
T ss_pred ------------------------------------------CcccccceeeccCccc----------------------
Confidence 0000000000000000
Q ss_pred CCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCcc--------------ccccCCCCCCeEEEE
Q 001248 802 PPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT--------------MATFMPPPPAATFLA 866 (1114)
Q Consensus 802 ~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~--------------~~~~~~~~~~i~~l~ 866 (1114)
.. ..|...|.+++|+ ++++++++ |+.|++||+.++.. +..+..|...|.+++
T Consensus 226 ---------~~--~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 292 (366)
T 3k26_A 226 ---------TR--DIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMR 292 (366)
T ss_dssp ---------EC--SSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCC
T ss_pred ---------cc--cCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEE
Confidence 00 0155566666665 45666665 66666666655433 455677888999999
Q ss_pred EecCC--CcEEEEEeCCCcEEEEEcccce----EEEeeccc--ccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001248 867 FHPQD--NNIIAIGMDDSSIQIYNVRVDE----VKSKLKGH--SKRITGLAFSHALNVLVSSGADSQLCVWSSDG 933 (1114)
Q Consensus 867 ~sp~d--~~~la~g~~dg~v~iwd~~~~~----~~~~l~~h--~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~ 933 (1114)
|+| + +++|++|+.||.|++||+.+++ ....+.+| ...|++++|+|++++|++++.||.|++||+.+
T Consensus 293 ~s~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 293 FSM-DFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp CEE-CTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EcC-CCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 999 7 9999999999999999999875 44577877 79999999999999999999999999999853
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-33 Score=320.72 Aligned_cols=356 Identities=14% Similarity=0.158 Sum_probs=247.2
Q ss_pred CCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC-CCCeEEEEeCCCeEEEEEccCCceeeee
Q 001248 380 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQH 458 (1114)
Q Consensus 380 dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las~~~dg~i~iwd~~~~~~~~~~ 458 (1114)
++.+++|+++.++... ++.+|.+.|.+++|+| ++++||+|+.||.|++||+.+++.....
T Consensus 22 ~~~~~v~~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 82 (408)
T 4a11_B 22 ESTRRVLGLELNKDRD-------------------VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYY 82 (408)
T ss_dssp HHHHHHHTEEECTTEE-------------------ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCE
T ss_pred cCcceeeccccCccee-------------------eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceE
Confidence 4557777776665543 4788999999999999 9999999999999999999987655422
Q ss_pred Ee----------eccccCCeeEEEecC-CCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCC-CceEE
Q 001248 459 LE----------IDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE-NIQFI 526 (1114)
Q Consensus 459 ~~----------l~~h~~~V~~v~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~l 526 (1114)
.. ..+|...|.+++|+| ++. ++++++.|+.|++||+.+++.+..+. +...+.++++.+.. ++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 159 (408)
T 4a11_B 83 TCKAVCSIGRDHPDVHRYSVETVQWYPHDTG--MFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLV 159 (408)
T ss_dssp EECEEEEECTTCTTCCSSCEEEEEECTTCTT--CEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEE
T ss_pred eccccccccccccccCCCcEEEEEEccCCCc--EEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEE
Confidence 11 135999999999999 555 79999999999999999999888887 77889999887643 45699
Q ss_pred EEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCc
Q 001248 527 FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV 606 (1114)
Q Consensus 527 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 606 (1114)
++++.|+.|++||+++......+..+...|.+++|+|++. ..+++++.||.|++||++++
T Consensus 160 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~--------------------~ll~~~~~dg~i~i~d~~~~ 219 (408)
T 4a11_B 160 AVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYD--------------------YILATASADSRVKLWDVRRA 219 (408)
T ss_dssp EEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCT--------------------TEEEEEETTSCEEEEETTCS
T ss_pred EEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCC--------------------cEEEEEcCCCcEEEEECCCC
Confidence 9999999999999999888888877777777777777665 14889999999999999876
Q ss_pred c-eEEEecc-------------CCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCC
Q 001248 607 Q-LLTSIDA-------------DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 672 (1114)
Q Consensus 607 ~-~~~~~~~-------------~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (1114)
. .+..+.. ..+...|.+++|+|++++|++++.||.|++||+.++.. ...+..+....
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~-------- 290 (408)
T 4a11_B 220 SGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGEN-TLVNYGKVCNN-------- 290 (408)
T ss_dssp SCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCB-CCCCCCCCCCC--------
T ss_pred CcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCcc-ceecccccccc--------
Confidence 5 4444421 23445789999999999999999999999999987732 11110000000
Q ss_pred CCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCcccccc
Q 001248 673 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 752 (1114)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 752 (1114)
.
T Consensus 291 -----------------------------------------------------------------------------~-- 291 (408)
T 4a11_B 291 -----------------------------------------------------------------------------S-- 291 (408)
T ss_dssp -----------------------------------------------------------------------------C--
T ss_pred -----------------------------------------------------------------------------c--
Confidence 0
Q ss_pred ceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCE
Q 001248 753 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 832 (1114)
Q Consensus 753 ~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~ 832 (1114)
.............+.+
T Consensus 292 ----------------------------------------------------------------~~~~~~~~~~~~~~~~ 307 (408)
T 4a11_B 292 ----------------------------------------------------------------KKGLKFTVSCGCSSEF 307 (408)
T ss_dssp ----------------------------------------------------------------SSCCCCEECCSSSSCE
T ss_pred ----------------------------------------------------------------cccceeEEecCCCceE
Confidence 0000011111223445
Q ss_pred EEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcC
Q 001248 833 VMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH 912 (1114)
Q Consensus 833 l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~ 912 (1114)
++++.++.|++||+.+++.+..+.+|...|++++|+| ++++|++|+.||.|++||+.+++.+.....+... ..+.+
T Consensus 308 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~ 383 (408)
T 4a11_B 308 VFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS-NFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLNP 383 (408)
T ss_dssp EEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEEECC---------------------
T ss_pred EEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcC-CCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---ccccc
Confidence 5555599999999999999999999999999999999 8999999999999999999998877655543322 22333
Q ss_pred -CCCEEEEEeCCCcEEEEeCCC
Q 001248 913 -ALNVLVSSGADSQLCVWSSDG 933 (1114)
Q Consensus 913 -d~~~l~s~s~D~~v~iwd~~~ 933 (1114)
+...+.+.+.|+.+++|+...
T Consensus 384 ~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 384 AFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp ----------------------
T ss_pred ccceeecccCccCceeecCCcc
Confidence 334566778899999998754
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-33 Score=312.75 Aligned_cols=294 Identities=15% Similarity=0.217 Sum_probs=224.4
Q ss_pred cccCCCCCeeEEEEcCCCCeEE-EEeC---CCeEEEEEccCCceeeeeEeeccccCCeeEEEecCC---CCeeEEEEecC
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFG-VAYS---RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP---NKQLCVITCGD 487 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~la-s~~~---dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d---~~~~~l~s~~~ 487 (1114)
++.+|...|.+++|+|++..++ +|+. |+.|+|||+.+++.... ...+|...|.+++|+|+ +. ++++|+.
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~--~l~~~~~ 88 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL--REIEKAKPIKCGTFGATSLQQR--YLATGDF 88 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE--EEEEESSCEEEEECTTCCTTTC--CEEEEET
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce--eeecccCcEEEEEEcCCCCCCc--eEEEecC
Confidence 5678999999999999996555 5555 89999999998875432 23379999999999999 56 7999999
Q ss_pred CCCEEEEeCCCCc-ceeEeeccccCEEEEeecc----CCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEe
Q 001248 488 DKTIKVWDATNGA-KQYIFEGHEAPVYSVCPHH----KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS 562 (1114)
Q Consensus 488 d~~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~~----~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s 562 (1114)
|+.|++||+.+++ .+..+.+|...|.+++|.+ ++++.+|++++.|+.|++||+++...
T Consensus 89 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~----------------- 151 (357)
T 3i2n_A 89 GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD----------------- 151 (357)
T ss_dssp TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS-----------------
T ss_pred CCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC-----------------
Confidence 9999999999988 8889999999999997642 34555666666666666666554221
Q ss_pred cCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCC--CCCcCeEE----EcCCCCEEEEE
Q 001248 563 ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG--LPASPRIR----FNKDGCLLAVS 636 (1114)
Q Consensus 563 ~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~----~s~d~~~l~~~ 636 (1114)
.+..+..+.. ...+.+++ |+|++++++++
T Consensus 152 ---------------------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 186 (357)
T 3i2n_A 152 ---------------------------------------------PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAG 186 (357)
T ss_dssp ---------------------------------------------CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEE
T ss_pred ---------------------------------------------cceeccccCCCCCCceEEEEEEeccCCCCCEEEEE
Confidence 2333322211 22456666 78899999999
Q ss_pred eCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcc
Q 001248 637 TNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKP 716 (1114)
Q Consensus 637 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1114)
+.||.|++||+.++.. ...
T Consensus 187 ~~d~~i~i~d~~~~~~-~~~------------------------------------------------------------ 205 (357)
T 3i2n_A 187 YDNGDIKLFDLRNMAL-RWE------------------------------------------------------------ 205 (357)
T ss_dssp ETTSEEEEEETTTTEE-EEE------------------------------------------------------------
T ss_pred ccCCeEEEEECccCce-eee------------------------------------------------------------
Confidence 9999999999876521 000
Q ss_pred cccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCcccccc
Q 001248 717 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVA 796 (1114)
Q Consensus 717 l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 796 (1114)
.
T Consensus 206 -------------------------------~------------------------------------------------ 206 (357)
T 3i2n_A 206 -------------------------------T------------------------------------------------ 206 (357)
T ss_dssp -------------------------------E------------------------------------------------
T ss_pred -------------------------------c------------------------------------------------
Confidence 0
Q ss_pred ccccCCCCCccccccCCCCCCCCCccEEEEee---CCCEEEEEe-CCeEEEEEcCCCccccccC-----CCCCCeEEEEE
Q 001248 797 PQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK---NDSYVMSAS-GGKISLFNMMTFKTMATFM-----PPPPAATFLAF 867 (1114)
Q Consensus 797 ~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~---d~~~l~~~~-dg~i~iwd~~~~~~~~~~~-----~~~~~i~~l~~ 867 (1114)
.|...|.+++|+| ++.+|++++ ||.|++||+.+++....+. +|...|++++|
T Consensus 207 -------------------~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~ 267 (357)
T 3i2n_A 207 -------------------NIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRH 267 (357)
T ss_dssp -------------------ECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEE
T ss_pred -------------------CCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEE
Confidence 0344566666666 677777777 7778888877766665554 89999999999
Q ss_pred ecCCCc-EEEEEeCCCcEEEEEcccc-------------------eEEEeecccccCeeEEEEcCCCCEEE-EEeCCCcE
Q 001248 868 HPQDNN-IIAIGMDDSSIQIYNVRVD-------------------EVKSKLKGHSKRITGLAFSHALNVLV-SSGADSQL 926 (1114)
Q Consensus 868 sp~d~~-~la~g~~dg~v~iwd~~~~-------------------~~~~~l~~h~~~V~~l~~s~d~~~l~-s~s~D~~v 926 (1114)
+| ++. +|++|+.||.|++||+.++ +.+..+.+|...|++++|+|++++|+ +++.|+.|
T Consensus 268 ~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i 346 (357)
T 3i2n_A 268 LP-QNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTV 346 (357)
T ss_dssp ET-TEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEE
T ss_pred CC-CCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcE
Confidence 99 777 8999999999999999853 46778899999999999999999998 89999999
Q ss_pred EEEeCCCC
Q 001248 927 CVWSSDGW 934 (1114)
Q Consensus 927 ~iwd~~~~ 934 (1114)
++||+.+.
T Consensus 347 ~iw~~~~~ 354 (357)
T 3i2n_A 347 RVLIVTKL 354 (357)
T ss_dssp EEEEECC-
T ss_pred EEEECCCc
Confidence 99999874
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-33 Score=316.62 Aligned_cols=300 Identities=15% Similarity=0.200 Sum_probs=241.5
Q ss_pred eEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCc------ceeEeeccccCEEEEeeccC--CCc---eEE
Q 001248 458 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA------KQYIFEGHEAPVYSVCPHHK--ENI---QFI 526 (1114)
Q Consensus 458 ~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~------~~~~~~~h~~~v~~~~~~~~--~~~---~~l 526 (1114)
...+.+|.+.|++++|+| + +|++|+.|++|++||+.+++ .+..+.+|...|.+++|+++ .++ .+|
T Consensus 9 ~~~~~~h~~~i~~~~~~~--~--~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN--S--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EEESSCSSSCEEEEEECS--S--EEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhhcCeEEEEecC--C--eEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 346789999999999998 5 79999999999999999988 78899999999999998754 226 799
Q ss_pred EEEecCCeEEEEEcCCCCC-----eeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEec----CCCCE-EEEEeCCC
Q 001248 527 FSTALDGKIKAWLYDNLGS-----RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD----TTKNR-FLAAGDDF 596 (1114)
Q Consensus 527 ~s~~~d~~i~~wd~~~~~~-----~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~----~~~~~-l~~~~~dg 596 (1114)
++++.|+.|++||+.+... ...+..+... .....+.+++|+ |++++ |++++.||
T Consensus 85 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg 148 (397)
T 1sq9_A 85 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSD----------------MKKHSFWALKWGASNDRLLSHRLVATDVKG 148 (397)
T ss_dssp EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTT----------------GGGSCEEEEEEECCC----CEEEEEEETTS
T ss_pred EEEcCCCCEEEEEccCCcccccccceeecccccc----------------cCCCcEEEEEEeeccCCCCceEEEEEeCCC
Confidence 9999999999999988765 4444444200 001244445555 55568 99999999
Q ss_pred eEEEEECCC------cceEE-----Eecc-----CCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeecccc
Q 001248 597 SIKFWDMDS------VQLLT-----SIDA-----DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL 660 (1114)
Q Consensus 597 ~i~iwd~~~------~~~~~-----~~~~-----~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 660 (1114)
.|++||+.+ ++.+. .+.. ..+...+.+++|+|++ ++++++.||.|++||+.++ +.+..+..
T Consensus 149 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-~~~~~~~~- 225 (397)
T 1sq9_A 149 TTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL-RPLYNFES- 225 (397)
T ss_dssp CEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT-EEEEEEEC-
T ss_pred cEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC-ceeEEEec-
Confidence 999999988 66665 6643 3345679999999999 9999999999999998765 22111100
Q ss_pred ccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccc
Q 001248 661 AYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQC 740 (1114)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~ 740 (1114)
T Consensus 226 -------------------------------------------------------------------------------- 225 (397)
T 1sq9_A 226 -------------------------------------------------------------------------------- 225 (397)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCC---
Q 001248 741 RSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP--- 817 (1114)
Q Consensus 741 ~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~--- 817 (1114)
. .+|
T Consensus 226 -----------------------------------------------------------------------~--~~h~~~ 232 (397)
T 1sq9_A 226 -----------------------------------------------------------------------Q--HSMINN 232 (397)
T ss_dssp -----------------------------------------------------------------------C--C---CC
T ss_pred -----------------------------------------------------------------------c--cccccc
Confidence 0 003
Q ss_pred CCCccEEEEeeCCCEEEEEe-C---CeEEEEEcCCCccccccCC-------------CCCCeEEEEEecCCCcEEEEEeC
Q 001248 818 EEAVPCFALSKNDSYVMSAS-G---GKISLFNMMTFKTMATFMP-------------PPPAATFLAFHPQDNNIIAIGMD 880 (1114)
Q Consensus 818 ~~~v~~v~~s~d~~~l~~~~-d---g~i~iwd~~~~~~~~~~~~-------------~~~~i~~l~~sp~d~~~la~g~~ 880 (1114)
...|.+++|+|++++|++++ | +.|++||+.+++.+..+.. |...|.+++|+| ++++|++|+.
T Consensus 233 ~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~ 311 (397)
T 1sq9_A 233 SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGW 311 (397)
T ss_dssp CCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEET
T ss_pred CCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECC-CCCEEEEEeC
Confidence 55677788888888888887 7 7888888888888888877 899999999999 8999999999
Q ss_pred CCcEEEEEcccceEEEeec------cc---------------ccCeeEEEEcCCC----------CEEEEEeCCCcEEEE
Q 001248 881 DSSIQIYNVRVDEVKSKLK------GH---------------SKRITGLAFSHAL----------NVLVSSGADSQLCVW 929 (1114)
Q Consensus 881 dg~v~iwd~~~~~~~~~l~------~h---------------~~~V~~l~~s~d~----------~~l~s~s~D~~v~iw 929 (1114)
||.|++||+.+++.+..+. +| ...|++++|+|++ ++|++++.|+.|++|
T Consensus 312 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw 391 (397)
T 1sq9_A 312 DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWF 391 (397)
T ss_dssp TSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEE
T ss_pred CCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEE
Confidence 9999999999999999998 88 9999999999998 799999999999999
Q ss_pred eCCCC
Q 001248 930 SSDGW 934 (1114)
Q Consensus 930 d~~~~ 934 (1114)
++.++
T Consensus 392 ~~~~g 396 (397)
T 1sq9_A 392 REAGG 396 (397)
T ss_dssp EEEC-
T ss_pred EcCCC
Confidence 99874
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-33 Score=322.47 Aligned_cols=240 Identities=15% Similarity=0.236 Sum_probs=185.7
Q ss_pred eccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC-CC
Q 001248 354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DG 432 (1114)
Q Consensus 354 ~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg 432 (1114)
...|...|+||+|+|....+||+|+.||+|+|||+.+++..... .+.+|.+.|++|+|+| ++
T Consensus 115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~-----------------~~~gH~~~V~~l~f~p~~~ 177 (435)
T 4e54_B 115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFI-----------------KGIGAGGSITGLKFNPLNT 177 (435)
T ss_dssp EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEE-----------------CCCSSSCCCCEEEECSSCT
T ss_pred CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEE-----------------EccCCCCCEEEEEEeCCCC
Confidence 34589999999999965547999999999999999887654311 3578999999999998 78
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCE
Q 001248 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 512 (1114)
Q Consensus 433 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 512 (1114)
.+|++|+.||+|+|||++++. .........+...+.+++|+|+++ +|++|+.||+|++||++ ++.+..+.+|...|
T Consensus 178 ~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v 253 (435)
T 4e54_B 178 NQFYASSMEGTTRLQDFKGNI-LRVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMD-GKELWNLRMHKKKV 253 (435)
T ss_dssp TEEEEECSSSCEEEEETTSCE-EEEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESS-SCBCCCSBCCSSCE
T ss_pred CEEEEEeCCCEEEEeeccCCc-eeEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccC-cceeEEEecccceE
Confidence 999999999999999998754 332223334555788999999999 89999999999999975 56788899999999
Q ss_pred EEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeee---cCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEE
Q 001248 513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY---EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 589 (1114)
Q Consensus 513 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~---~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l 589 (1114)
.+++|++..+ .++++++.|+.|++||+++......+ ..|...|.+++ |+|++++|
T Consensus 254 ~~v~~~p~~~-~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~---------------------~spdg~~l 311 (435)
T 4e54_B 254 THVALNPCCD-WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAAC---------------------FSPDGARL 311 (435)
T ss_dssp EEEEECTTCS-SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECC---------------------BCTTSSEE
T ss_pred EeeeecCCCc-eEEEEecCcceeeEEecccccccceEEEeeecccccccee---------------------ECCCCCee
Confidence 9999977543 58999999999999999876544322 33444555555 45555589
Q ss_pred EEEeCCCeEEEEECCCcceEEEeccCCCC----CCcCeEEEcCCCCEEEEE
Q 001248 590 LAAGDDFSIKFWDMDSVQLLTSIDADGGL----PASPRIRFNKDGCLLAVS 636 (1114)
Q Consensus 590 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~v~~~~~s~d~~~l~~~ 636 (1114)
++++.||.|++||+.++.....+..+... ..+....|+|++.+++++
T Consensus 312 ~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (435)
T 4e54_B 312 LTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVG 362 (435)
T ss_dssp EEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEE
T ss_pred EEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEE
Confidence 99999999999999998887777654321 123345566666555554
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-32 Score=304.96 Aligned_cols=306 Identities=11% Similarity=0.117 Sum_probs=242.4
Q ss_pred cceeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEE
Q 001248 349 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 428 (1114)
Q Consensus 349 ~~~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 428 (1114)
.+.....+|.+.|++++|+|+|++ |++|+.||.|+|||+.+++.+. .+.+|...|.+++|
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~-l~~~~~dg~i~vwd~~~~~~~~-------------------~~~~h~~~v~~~~~ 82 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDL-LFSCSKDSSASVWYSLNGERLG-------------------TLDGHTGTIWSIDV 82 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCE-EEEEESSSCEEEEETTTCCEEE-------------------EECCCSSCEEEEEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCE-EEEEeCCCEEEEEeCCCchhhh-------------------hhhhcCCcEEEEEE
Confidence 344556679999999999999995 9999999999999999988766 37789999999999
Q ss_pred cCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCC-----CCEEEEeCCCCc---
Q 001248 429 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-----KTIKVWDATNGA--- 500 (1114)
Q Consensus 429 spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d-----~~i~iwd~~~~~--- 500 (1114)
+|++++|++++.||.|++||+.+++.+. .+. |...|.+++|+|+++ ++++++.+ +.|++||+.++.
T Consensus 83 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~ 156 (369)
T 3zwl_B 83 DCFTKYCVTGSADYSIKLWDVSNGQCVA---TWK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATH 156 (369)
T ss_dssp CTTSSEEEEEETTTEEEEEETTTCCEEE---EEE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTC
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCcEEE---Eee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCccce
Confidence 9999999999999999999999988766 344 888999999999999 78888888 999999998764
Q ss_pred --------ceeEeecccc--CEEEEeeccCCCceEEEEEecCCeEEEEEcCC-CCCeeeecCCCCeeEEEEEecCCCeEE
Q 001248 501 --------KQYIFEGHEA--PVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTY 569 (1114)
Q Consensus 501 --------~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~~~ 569 (1114)
.+..+..|.. .+.+++|++ ++.++++++.||.|++||+++ ......+..+...|.+++|+|++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~---- 230 (369)
T 3zwl_B 157 ELTKVSEEPIHKIITHEGLDAATVAGWST--KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDL---- 230 (369)
T ss_dssp CEEEECSSCSEEEECCTTCCCEEEEEECG--GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTS----
T ss_pred eecccccceeeeccCCcCccceeEEEEcC--CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCC----
Confidence 3445556666 899999865 557999999999999999987 45555556566666666555555
Q ss_pred eeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccC
Q 001248 570 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 649 (1114)
Q Consensus 570 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~ 649 (1114)
++|++++.|+.|++||+.+++.+..+... ..+.+++|+|+++++++++.++...+|....
T Consensus 231 -----------------~~l~~~~~d~~i~v~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 290 (369)
T 3zwl_B 231 -----------------TYFITSSRDTNSFLVDVSTLQVLKKYETD---CPLNTAVITPLKEFIILGGGQEAKDVTTTSA 290 (369)
T ss_dssp -----------------SEEEEEETTSEEEEEETTTCCEEEEEECS---SCEEEEEECSSSSEEEEEECCC---------
T ss_pred -----------------CEEEEecCCceEEEEECCCCceeeeecCC---CCceeEEecCCCceEEEeecCCCceEEEEec
Confidence 47999999999999999999999888733 4689999999999999999998665554322
Q ss_pred CccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEE
Q 001248 650 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW 729 (1114)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw 729 (1114)
.. ....+++|
T Consensus 291 ~~----------------------------------------------------------------------~~~~i~~~ 300 (369)
T 3zwl_B 291 NE----------------------------------------------------------------------GKFEARFY 300 (369)
T ss_dssp --------------------------------------------------------------------------CEEEEE
T ss_pred CC----------------------------------------------------------------------CcceeEEE
Confidence 10 01245566
Q ss_pred EeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeeccc
Q 001248 730 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRT 783 (1114)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~ 783 (1114)
+.......... .+|...|.+++|+|++++|++++.||.|++|++...
T Consensus 301 d~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 301 HKIFEEEIGRV-------QGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp ETTTCCEEEEE-------ECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred ecCCCcchhhe-------ecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 65543222111 237889999999999999999999999999998754
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-33 Score=319.56 Aligned_cols=362 Identities=12% Similarity=0.156 Sum_probs=248.1
Q ss_pred CCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcC-CCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCC
Q 001248 594 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 672 (1114)
Q Consensus 594 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (1114)
.++.+++|++..++....+..| ...|.+++|+| ++++|++++.||.|++||+.++.. ...+.....
T Consensus 21 ~~~~~~v~~~~~~~~~~~~~~h--~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~---------- 87 (408)
T 4a11_B 21 AESTRRVLGLELNKDRDVERIH--GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSR-QSYYTCKAV---------- 87 (408)
T ss_dssp HHHHHHHHTEEECTTEEECCCC--SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSS-SSCEEECEE----------
T ss_pred ccCcceeeccccCcceeeeecc--CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcc-cceEecccc----------
Confidence 3456778888887777777765 45899999999 999999999999999999987632 211110000
Q ss_pred CCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCcccccc
Q 001248 673 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 752 (1114)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 752 (1114)
.... .....+|..
T Consensus 88 --------------------------------------------------------~~~~-----------~~~~~~~~~ 100 (408)
T 4a11_B 88 --------------------------------------------------------CSIG-----------RDHPDVHRY 100 (408)
T ss_dssp --------------------------------------------------------EEEC-----------TTCTTCCSS
T ss_pred --------------------------------------------------------cccc-----------ccccccCCC
Confidence 0000 000023788
Q ss_pred ceEEEEEcc-CcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeC--
Q 001248 753 KISRLIFTN-SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN-- 829 (1114)
Q Consensus 753 ~i~~l~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d-- 829 (1114)
.|.+++|+| ++..+++++.||.|++|++... ...... .+...+.++++++.
T Consensus 101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----------------------~~~~~~----~~~~~~~~~~~~~~~~ 154 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL----------------------QTADVF----NFEETVYSHHMSPVST 154 (408)
T ss_dssp CEEEEEECTTCTTCEEEEETTSEEEEEETTTT----------------------EEEEEE----ECSSCEEEEEECSSCS
T ss_pred cEEEEEEccCCCcEEEEEeCCCeEEEeeCCCC----------------------ccceec----cCCCceeeeEeecCCC
Confidence 999999999 7788999999999999987532 211111 15667889999884
Q ss_pred -CCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCc-EEEEEeCCCcEEEEEcccce-EEEee-------
Q 001248 830 -DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN-IIAIGMDDSSIQIYNVRVDE-VKSKL------- 898 (1114)
Q Consensus 830 -~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~-~la~g~~dg~v~iwd~~~~~-~~~~l------- 898 (1114)
+.++++++ ++.|++||+.+++.+..+..|...|++++|+| ++. +|++|+.||.|++||+.++. .+..+
T Consensus 155 ~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 233 (408)
T 4a11_B 155 KHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP-RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKK 233 (408)
T ss_dssp SCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCS
T ss_pred CCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC-CCCcEEEEEcCCCcEEEEECCCCCccccccccccccc
Confidence 44899888 89999999999999999999999999999999 665 79999999999999998764 33333
Q ss_pred --------cccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE
Q 001248 899 --------KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 970 (1114)
Q Consensus 899 --------~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~ 970 (1114)
.+|...|++++|+|++++|++++.|+.|++||+.+++.............. ......+.....+.+++++
T Consensus 234 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 311 (408)
T 4a11_B 234 SQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSK--KGLKFTVSCGCSSEFVFVP 311 (408)
T ss_dssp CCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCS--SCCCCEECCSSSSCEEEEE
T ss_pred ceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccccccccc--ccceeEEecCCCceEEEEe
Confidence 579999999999999999999999999999999986643221111111111 1122333344456666668
Q ss_pred eCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccc
Q 001248 971 HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHP 1050 (1114)
Q Consensus 971 ~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1050 (1114)
.++.|++||+.+++.+..+. +|...|++++|+|++++|++++.||.|++||+.+++.+...... ..
T Consensus 312 ~~~~i~v~d~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~-----------~~- 377 (408)
T 4a11_B 312 YGSTIAVYTVYSGEQITMLK--GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDET-----------TT- 377 (408)
T ss_dssp ETTEEEEEETTTCCEEEEEC--CCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC------------------------
T ss_pred cCCEEEEEECcCCcceeeec--cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCce-----------Ee-
Confidence 99999999999999988876 88999999999999999999999999999999999887654311 01
Q ss_pred eEEEecCCCCCeEEEEeCCCcEEEEeccC
Q 001248 1051 LVIAAHPQEPNEFALGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1051 ~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~ 1079 (1114)
...+.+.+.....+.+.|+.+++|+.+.
T Consensus 378 -~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 378 -KSQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp -----------------------------
T ss_pred -ccccccccceeecccCccCceeecCCcc
Confidence 1223333455677888899999998653
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=337.12 Aligned_cols=211 Identities=18% Similarity=0.283 Sum_probs=175.3
Q ss_pred cccCCCCCeeEEEEcCCC-CeEEEEeCCCeEEEEEccCCcee--eeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCE
Q 001248 415 LVKDPGVSVNRVIWSPDG-SLFGVAYSRHIVQIYSYHGGDEV--RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 491 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg-~~las~~~dg~i~iwd~~~~~~~--~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i 491 (1114)
.+.+|.+.|++++|+|++ ++|++|+.|++|+|||+.++... .....+.+|...|.+++|+|+++ +|++|+.|++|
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~--~l~sgs~Dg~v 454 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ--FALSGSWDGEL 454 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC--EEEEEeCCCcE
Confidence 478999999999999864 79999999999999999864321 12336889999999999999999 79999999999
Q ss_pred EEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeee---cCCCCeeEEEEEecCCCeE
Q 001248 492 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY---EAPGRWCTTMAYSADGTRT 568 (1114)
Q Consensus 492 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~---~~~~~~v~~~~~s~~g~~~ 568 (1114)
++||+.+++.+..+.+|...|.+++|++ ++.+|++++.|++|++||.......... ..|...|.+++|+|++.
T Consensus 455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-- 530 (694)
T 3dm0_A 455 RLWDLAAGVSTRRFVGHTKDVLSVAFSL--DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTL-- 530 (694)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSS--
T ss_pred EEEECCCCcceeEEeCCCCCEEEEEEeC--CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCC--
Confidence 9999999999999999999999999865 4579999999999999997643221111 22334455555544431
Q ss_pred EeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEcc
Q 001248 569 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 648 (1114)
Q Consensus 569 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~ 648 (1114)
...+++++.|+.|++||+.+++....+..|. ..|.+++|+|++++|++++.||.|++||+.
T Consensus 531 -----------------~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~--~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~ 591 (694)
T 3dm0_A 531 -----------------QPTIVSASWDKTVKVWNLSNCKLRSTLAGHT--GYVSTVAVSPDGSLCASGGKDGVVLLWDLA 591 (694)
T ss_dssp -----------------SCEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSBCEEEETT
T ss_pred -----------------cceEEEEeCCCeEEEEECCCCcEEEEEcCCC--CCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 1469999999999999999999998887664 479999999999999999999999999987
Q ss_pred CC
Q 001248 649 DG 650 (1114)
Q Consensus 649 ~~ 650 (1114)
++
T Consensus 592 ~~ 593 (694)
T 3dm0_A 592 EG 593 (694)
T ss_dssp TT
T ss_pred CC
Confidence 76
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=319.73 Aligned_cols=294 Identities=15% Similarity=0.192 Sum_probs=222.4
Q ss_pred ceeEEEecC-CCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcC-CCCEEEEEeCCCcEEEEEccCCccc
Q 001248 576 SLGVVQFDT-TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRL 653 (1114)
Q Consensus 576 ~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~dg~i~iwd~~~~~~~ 653 (1114)
.|.+++|+| ++++|++|+.||.|+|||+.+++....+...+|...|.+++|+| ++++|++++.||+|++||+.++.
T Consensus 121 ~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~-- 198 (435)
T 4e54_B 121 RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNI-- 198 (435)
T ss_dssp CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCE--
T ss_pred CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCc--
Confidence 455555665 34579999999999999999887766666666677899999998 78999999999999999976431
Q ss_pred eeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEecc
Q 001248 654 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 733 (1114)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~ 733 (1114)
...+..
T Consensus 199 ~~~~~~-------------------------------------------------------------------------- 204 (435)
T 4e54_B 199 LRVFAS-------------------------------------------------------------------------- 204 (435)
T ss_dssp EEEEEC--------------------------------------------------------------------------
T ss_pred eeEEec--------------------------------------------------------------------------
Confidence 000000
Q ss_pred CCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCC
Q 001248 734 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 813 (1114)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~ 813 (1114)
.
T Consensus 205 ---------------------------~---------------------------------------------------- 205 (435)
T 4e54_B 205 ---------------------------S---------------------------------------------------- 205 (435)
T ss_dssp ---------------------------C----------------------------------------------------
T ss_pred ---------------------------c----------------------------------------------------
Confidence 0
Q ss_pred CCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc
Q 001248 814 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 892 (1114)
Q Consensus 814 ~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~ 892 (1114)
..+...+.+++|++++++|++|+ ||.|++||+. ++.+..+.+|...|++++|+|++..+|++|+.|+.|+|||+.++
T Consensus 206 -~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~ 283 (435)
T 4e54_B 206 -DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQV 283 (435)
T ss_dssp -SSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTC
T ss_pred -CCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccc
Confidence 00334567889999999999998 8999999986 46677889999999999999955568999999999999999886
Q ss_pred eEEE---eecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE
Q 001248 893 EVKS---KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 969 (1114)
Q Consensus 893 ~~~~---~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~ 969 (1114)
+... ...+|...|++++|+|||++|++++.|++|+|||+.+++.......... . ......+....|+|++.++++
T Consensus 284 ~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~ 361 (435)
T 4e54_B 284 RGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPH-R-HFQHLTPIKAAWHPRYNLIVV 361 (435)
T ss_dssp CSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCC-C-CCSSSCCCBCEECSSSSCEEE
T ss_pred cccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccc-c-ccccceeEEEEEcCCCCEEEE
Confidence 5443 3467999999999999999999999999999999998654332111110 0 000112344566676666665
Q ss_pred E-------------eCCeEEEEEcCCCceeeeeecCCCCcCeeEE-EECCCCCEEEEEEcCCeEEEEEcCCCeee
Q 001248 970 V-------------HETQLAIFETTKLECVKQWVPRESSAPITHA-TFSCDSQLVYACFLDATVCVFSAANLKLR 1030 (1114)
Q Consensus 970 ~-------------~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l-~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~ 1030 (1114)
+ .++.|++||..+++.+..+. .+|...|.++ +|+|||++|++|+ |+.|+||++.+++..
T Consensus 362 ~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~-~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 362 GRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY-DPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp ECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC-CSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred EEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe-CCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 3 23579999999999988765 3678888887 6999999999876 889999999988754
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=313.23 Aligned_cols=308 Identities=12% Similarity=0.163 Sum_probs=239.9
Q ss_pred EEECCCcceEEEeccCCCCCCcCeEEEcCCC-CEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccch
Q 001248 600 FWDMDSVQLLTSIDADGGLPASPRIRFNKDG-CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPI 678 (1114)
Q Consensus 600 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (1114)
+|+....+....+..| ...|.+++|+|++ ++|++++.||.|++||+.++. ....+.
T Consensus 57 ~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~-------------------- 113 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPF--DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQN-KTSFIQ-------------------- 113 (383)
T ss_dssp HHHHTTCEEEEEECCC--SSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTT-CEEEEC--------------------
T ss_pred cccccccceEEeccCC--CCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcc-cceeee--------------------
Confidence 3444555666667655 4579999999999 999999999999999998662 111110
Q ss_pred hhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEE
Q 001248 679 SAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLI 758 (1114)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 758 (1114)
..+|...|.+++
T Consensus 114 --------------------------------------------------------------------~~~h~~~v~~~~ 125 (383)
T 3ei3_B 114 --------------------------------------------------------------------GMGPGDAITGMK 125 (383)
T ss_dssp --------------------------------------------------------------------CCSTTCBEEEEE
T ss_pred --------------------------------------------------------------------cCCcCCceeEEE
Confidence 012778999999
Q ss_pred Ecc-CcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe
Q 001248 759 FTN-SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS 837 (1114)
Q Consensus 759 ~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~ 837 (1114)
|+| ++..+++++.|+.|++|++.... .........+...|.+++|+|++++|++++
T Consensus 126 ~~~~~~~~l~s~~~d~~i~iwd~~~~~-----------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 182 (383)
T 3ei3_B 126 FNQFNTNQLFVSSIRGATTLRDFSGSV-----------------------IQVFAKTDSWDYWYCCVDVSVSRQMLATGD 182 (383)
T ss_dssp EETTEEEEEEEEETTTEEEEEETTSCE-----------------------EEEEECCCCSSCCEEEEEEETTTTEEEEEE
T ss_pred eCCCCCCEEEEEeCCCEEEEEECCCCc-----------------------eEEEeccCCCCCCeEEEEECCCCCEEEEEC
Confidence 999 78999999999999999975211 111111122568899999999999999999
Q ss_pred -CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCc-EEEEEeCCCcEEEEEccc----ceEEEeecccccCeeEEEEc
Q 001248 838 -GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN-IIAIGMDDSSIQIYNVRV----DEVKSKLKGHSKRITGLAFS 911 (1114)
Q Consensus 838 -dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~-~la~g~~dg~v~iwd~~~----~~~~~~l~~h~~~V~~l~~s 911 (1114)
|+.|++||+ +++.+..+.+|...|.+++|+| ++. +|++|+.||.|++||+.+ +.++..+ +|...|++++|+
T Consensus 183 ~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s 259 (383)
T 3ei3_B 183 STGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFN 259 (383)
T ss_dssp TTSEEEEEET-TSCEEEEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEEC
T ss_pred CCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEc
Confidence 899999999 5778888999999999999999 776 999999999999999998 6666666 699999999999
Q ss_pred C-CCCEEEEEeCCCcEEEEeCCCCcccccccccc--CCCCCC-------CCCCceEEEEccCCcEEEEEeCCeEEEEEcC
Q 001248 912 H-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQI--PTGRTP-------TAQSDTRVQFHQDQIHFLVVHETQLAIFETT 981 (1114)
Q Consensus 912 ~-d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~--~~~~~~-------~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~ 981 (1114)
| ++++|++++.|++|++||+.+++......... ...+.. ....+..++|+|||++ ..+.|+.|++||+.
T Consensus 260 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~ 338 (383)
T 3ei3_B 260 PTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDAN 338 (383)
T ss_dssp TTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETT
T ss_pred CCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecC
Confidence 9 99999999999999999999866532211100 001110 0022334556666666 22579999999999
Q ss_pred CCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCC
Q 001248 982 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1026 (1114)
Q Consensus 982 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~ 1026 (1114)
+++.+..+....|...+..++|+||+++|++++ ||.|+|||+++
T Consensus 339 ~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 339 SGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp TCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 999999887655778889999999999999997 99999999875
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-32 Score=297.09 Aligned_cols=255 Identities=16% Similarity=0.205 Sum_probs=207.0
Q ss_pred eccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCc--ceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCC
Q 001248 354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR--ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 431 (1114)
Q Consensus 354 ~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd 431 (1114)
..+|.+.|++++|+|+|++ ||+|+.|++|+|||+.++ +.+. .+.+|.+.|.+++|+|+
T Consensus 5 ~~~h~~~V~~~~~s~~g~~-las~s~D~~v~iw~~~~~~~~~~~-------------------~l~gH~~~V~~v~~s~~ 64 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKR-MATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHP 64 (297)
T ss_dssp CCSCSSCEEEEEECTTSSE-EEEEETTSCEEEEEBCSSCBCCCE-------------------EECCCSSCEEEEEECCG
T ss_pred ccCCcCceEEEEECCCCCE-EEEEeCCCEEEEEecCCCCcEEEE-------------------EEccccCCeEEEEecCC
Confidence 3459999999999999995 999999999999999753 2222 47899999999999874
Q ss_pred --CCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCC--CCeeEEEEecCCCCEEEEeCCCCcc--eeEe
Q 001248 432 --GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNGAK--QYIF 505 (1114)
Q Consensus 432 --g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~ 505 (1114)
|++||+|+.|++|+|||+.+++.. ....+.+|...|.+++|+|+ +. +|++++.|++|++||+.++.. ...+
T Consensus 65 ~~g~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~~~~ 141 (297)
T 2pm7_B 65 KFGTILASCSYDGKVMIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSPIII 141 (297)
T ss_dssp GGCSEEEEEETTTEEEEEEBSSSCBC-CCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCCEEE
T ss_pred CcCCEEEEEcCCCEEEEEEcCCCceE-EEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceeeeee
Confidence 899999999999999999987421 22357789999999999998 67 799999999999999987642 4677
Q ss_pred eccccCEEEEeeccCC-----------CceEEEEEecCCeEEEEEcCCCC----CeeeecCCCCeeEEEEEecCCCeEEe
Q 001248 506 EGHEAPVYSVCPHHKE-----------NIQFIFSTALDGKIKAWLYDNLG----SRVDYEAPGRWCTTMAYSADGTRTYQ 570 (1114)
Q Consensus 506 ~~h~~~v~~~~~~~~~-----------~~~~l~s~~~d~~i~~wd~~~~~----~~~~~~~~~~~v~~~~~s~~g~~~~~ 570 (1114)
.+|...|.+++|++.. ++.+|++|+.|++|++||+++.. ....+..|...|.+++|+|++.
T Consensus 142 ~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~---- 217 (297)
T 2pm7_B 142 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL---- 217 (297)
T ss_dssp ECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS----
T ss_pred ecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCC----
Confidence 8999999999998752 35699999999999999998765 2345666777777777777641
Q ss_pred eecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcc---eEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEc
Q 001248 571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ---LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT 647 (1114)
Q Consensus 571 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~ 647 (1114)
.+++|++++.|++|++||+.++. ....+....+...|.+++|+|+|++|++++.||.|++|+.
T Consensus 218 --------------~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~ 283 (297)
T 2pm7_B 218 --------------LRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 283 (297)
T ss_dssp --------------SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred --------------CceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEE
Confidence 02479999999999999987643 1223322344567899999999999999999999999997
Q ss_pred cC
Q 001248 648 SD 649 (1114)
Q Consensus 648 ~~ 649 (1114)
..
T Consensus 284 ~~ 285 (297)
T 2pm7_B 284 NL 285 (297)
T ss_dssp CT
T ss_pred CC
Confidence 53
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=318.03 Aligned_cols=321 Identities=12% Similarity=0.105 Sum_probs=243.6
Q ss_pred cccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCC
Q 001248 463 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 542 (1114)
Q Consensus 463 ~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 542 (1114)
.-...|.+++|+|||+ ++||++.|++|+ |...++ .+.+|...|.+++|+|. | .++.+.+|+.
T Consensus 13 ~~~~~v~sv~~SpDG~--~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPd--g-------~~~~~~~~~~-- 74 (588)
T 2j04_A 13 EFEDWKNNLTWARDGT--LYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPL--E-------FENKLDFELA-- 74 (588)
T ss_dssp CCSSSSCCEEECTTSC--EEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECC--C-------CCCTTTTSCC--
T ss_pred HhhccEEEEEECCCCC--EEEEEcCCceee--cccccc---eecCCCccEEEEEECCC--C-------CcceEEEEeC--
Confidence 3457899999999999 899999999999 755554 44799999999998664 3 4555555543
Q ss_pred CCCeeeec-CCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCC---C
Q 001248 543 LGSRVDYE-APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG---L 618 (1114)
Q Consensus 543 ~~~~~~~~-~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~ 618 (1114)
+....+. .+...|.+++|+|+|. +|++++.||.|++||... ++..+. +.. .
T Consensus 75 -~~~~~~~~~~~~~V~~vawSPdG~---------------------~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~ 129 (588)
T 2j04_A 75 -QQNGLLNSQPVCYPRVCKPSPIDD---------------------WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSS 129 (588)
T ss_dssp -CSSCSSTTSCSCCEEEEEECSSSS---------------------CEEEEETTSCEEEEETTE--EEEECC-CSSCSTT
T ss_pred -CCceEeecCCCCcEEEEEECCCCC---------------------EEEEEeCCCcEEEEeCCc--eeeecc-CCCcccc
Confidence 3222222 2345566666665554 799999999999999544 555555 331 1
Q ss_pred CCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCcc------ceeeccccccccccCCCCCCCCccchhhhhhhhccccccc
Q 001248 619 PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR------LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLA 692 (1114)
Q Consensus 619 ~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1114)
..+.+++|||||++|++|+.||+|++||+.++.. .+..+..+
T Consensus 130 ~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~-------------------------------- 177 (588)
T 2j04_A 130 RTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLS-------------------------------- 177 (588)
T ss_dssp TCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECS--------------------------------
T ss_pred ccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecc--------------------------------
Confidence 2589999999999999999999999999876510 00000000
Q ss_pred cccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccC
Q 001248 693 DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN 772 (1114)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d 772 (1114)
T Consensus 178 -------------------------------------------------------------------------------- 177 (588)
T 2j04_A 178 -------------------------------------------------------------------------------- 177 (588)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccc
Q 001248 773 AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM 852 (1114)
Q Consensus 773 g~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~ 852 (1114)
. .+|...|.+++|+||| +++++.|++|++||+.++...
T Consensus 178 ---------------------------------------~--~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~ 215 (588)
T 2j04_A 178 ---------------------------------------D--AGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQ 215 (588)
T ss_dssp ---------------------------------------C--TTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSC
T ss_pred ---------------------------------------c--ccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccc
Confidence 0 1277789999999999 444444999999999877642
Q ss_pred ---ccc-CCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEE--cCCCCEEEEEeCCCcE
Q 001248 853 ---ATF-MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAF--SHALNVLVSSGADSQL 926 (1114)
Q Consensus 853 ---~~~-~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~--s~d~~~l~s~s~D~~v 926 (1114)
+++ .+|...|.+++|+ ++.||+++ +++|++||+.+++......+|.+.|++++| +||+..|+++++||+
T Consensus 216 ~~~~tL~~~h~~~V~svaFs---g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~- 290 (588)
T 2j04_A 216 PVSRMIQNASRRKITDLKIV---DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY- 290 (588)
T ss_dssp CCEEEEECCCSSCCCCEEEE---TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-
T ss_pred cceeeecccccCcEEEEEEE---CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-
Confidence 456 4788899999999 47888887 699999999988874444489999999999 999999999999999
Q ss_pred EEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCC
Q 001248 927 CVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCD 1006 (1114)
Q Consensus 927 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~d 1006 (1114)
++|..+. ++|+||+..++.. |+++++|+..... ...+ .+...|.+++||||
T Consensus 291 klw~~d~------------------------~~~spd~~l~a~~-d~~v~lW~~~g~~-l~~~---~~~~~I~~va~SPd 341 (588)
T 2j04_A 291 KVLLEDE------------------------LHVTADNIIAPYL-EKKFKKWSTIWNE-FNNY---ETTLVIHGISLSPD 341 (588)
T ss_dssp EEEESSS------------------------EEEECCCSSHHHH-HHHHHHTTTTTTS-SSSS---CCEEEEEEEEECTT
T ss_pred EEEeecc------------------------EEECCCceEEEEc-CCEEEEEECCCCc-eeee---ccceEEEEEEECCC
Confidence 9998862 5599999888775 9999999986554 3332 23677999999999
Q ss_pred CCEEEEEE
Q 001248 1007 SQLVYACF 1014 (1114)
Q Consensus 1007 g~~l~s~s 1014 (1114)
|+.+|+++
T Consensus 342 G~~lA~~~ 349 (588)
T 2j04_A 342 GYSIAIVY 349 (588)
T ss_dssp SSEEEEEE
T ss_pred CCEEEEEE
Confidence 99999886
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-32 Score=310.67 Aligned_cols=251 Identities=14% Similarity=0.211 Sum_probs=194.4
Q ss_pred EeccCCCCceEEEEcCCC-CeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC-
Q 001248 353 RTLNQGSSPMSMDFHPVQ-QTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP- 430 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spdg-~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp- 430 (1114)
...+|...|++++|+|+| + +|++|+.||.|+|||+.+++..... ...+|...|.+++|+|
T Consensus 68 ~~~~h~~~v~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~-----------------~~~~h~~~v~~~~~~~~ 129 (383)
T 3ei3_B 68 TASPFDRRVTSLEWHPTHPT-TVAVGSKGGDIILWDYDVQNKTSFI-----------------QGMGPGDAITGMKFNQF 129 (383)
T ss_dssp EECCCSSCEEEEEECSSCTT-EEEEEEBTSCEEEEETTSTTCEEEE-----------------CCCSTTCBEEEEEEETT
T ss_pred eccCCCCCEEEEEECCCCCC-EEEEEcCCCeEEEEeCCCcccceee-----------------ecCCcCCceeEEEeCCC
Confidence 334599999999999999 6 6999999999999999988765421 1347999999999999
Q ss_pred CCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeecccc
Q 001248 431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 510 (1114)
Q Consensus 431 dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 510 (1114)
++++|++++.|+.|++||+.+ ..+.......+|...|.+++|+|+++ +|++|+.|+.|++||+ +++.+..+.+|..
T Consensus 130 ~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~ 205 (383)
T 3ei3_B 130 NTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLGL-DGHEIFKEKLHKA 205 (383)
T ss_dssp EEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEET-TSCEEEEEECSSS
T ss_pred CCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEEC-CCCEEEEeccCCC
Confidence 789999999999999999996 44443334445668899999999999 7999999999999998 6888999999999
Q ss_pred CEEEEeeccCCCce-EEEEEecCCeEEEEEcCCCC----CeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecC-
Q 001248 511 PVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDNLG----SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT- 584 (1114)
Q Consensus 511 ~v~~~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~----~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~- 584 (1114)
.|.+++|++.. . ++++++.|+.|++||+++.. ....+ .+.. .+..++|+|
T Consensus 206 ~v~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~---------------------~v~~~~~s~~ 261 (383)
T 3ei3_B 206 KVTHAEFNPRC--DWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEK---------------------PVNAAYFNPT 261 (383)
T ss_dssp CEEEEEECSSC--TTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSS---------------------CEEEEEECTT
T ss_pred cEEEEEECCCC--CCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCC---------------------ceEEEEEcCC
Confidence 99999987644 5 89999999999999998733 22222 2333 445555555
Q ss_pred CCCEEEEEeCCCeEEEEECCCcceEEEeccCC-----CCCCcCeEEEcCCCCEEE---------EEeCCCcEEEEEccCC
Q 001248 585 TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG-----GLPASPRIRFNKDGCLLA---------VSTNDNGIKILATSDG 650 (1114)
Q Consensus 585 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~s~d~~~l~---------~~~~dg~i~iwd~~~~ 650 (1114)
++.+|++++.|+.|++||+.+++....+..+. +...+. +.|+|++..++ +++.||.|++||+.++
T Consensus 262 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~ 340 (383)
T 3ei3_B 262 DSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIK-ATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSG 340 (383)
T ss_dssp TSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCC-CEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTC
T ss_pred CCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceE-EeccCCCCceEEEecCCcccccCCCCeEEEEecCCC
Confidence 56689999999999999999988776665432 122333 35555555444 3445666666666555
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-32 Score=307.20 Aligned_cols=323 Identities=13% Similarity=0.158 Sum_probs=239.9
Q ss_pred ccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEe
Q 001248 416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495 (1114)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd 495 (1114)
+..|.++|.+++|+||+++|++++.|+.|++||+.+++ ......+.+|...|.+++|+|+++ +|++++.|+.|++||
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWT 80 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCC--EEEEEcCCCeEEEEE
Confidence 45689999999999999999999999999999999886 122336889999999999999999 799999999999999
Q ss_pred CCCCcceeE--eeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCee----eecCCCCeeEEEEEecCCCeEE
Q 001248 496 ATNGAKQYI--FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV----DYEAPGRWCTTMAYSADGTRTY 569 (1114)
Q Consensus 496 ~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~----~~~~~~~~v~~~~~s~~g~~~~ 569 (1114)
+.+++.... +..|...|.+++|++ ++.+|++++.|+.|++||++...... ....+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~--------------- 143 (372)
T 1k8k_C 81 LKGRTWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS--------------- 143 (372)
T ss_dssp EETTEEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS---------------
T ss_pred CCCCeeeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCC---------------
Confidence 998875544 467999999999865 45899999999999999998765321 1122333
Q ss_pred eeecccceeEEEecCCCCEEEEEeCCCeEEEEEC------------------CCcceEEEeccCCCCCCcCeEEEcCCCC
Q 001248 570 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM------------------DSVQLLTSIDADGGLPASPRIRFNKDGC 631 (1114)
Q Consensus 570 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~------------------~~~~~~~~~~~~~~~~~v~~~~~s~d~~ 631 (1114)
.+.+++|+|+++++++++.||.|++||+ ..++.+..+..+ ...+.+++|+|+++
T Consensus 144 ------~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~ 215 (372)
T 1k8k_C 144 ------TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS--CGWVHGVCFSANGS 215 (372)
T ss_dssp ------CEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC--SSCEEEEEECSSSS
T ss_pred ------CeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCC--CCeEEEEEECCCCC
Confidence 4455555555568999999999999995 367777777755 44799999999999
Q ss_pred EEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCcccc
Q 001248 632 LLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSL 711 (1114)
Q Consensus 632 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (1114)
+|++++.||.|++||+.++ +.+..+.
T Consensus 216 ~l~~~~~d~~i~i~d~~~~-~~~~~~~----------------------------------------------------- 241 (372)
T 1k8k_C 216 RVAWVSHDSTVCLADADKK-MAVATLA----------------------------------------------------- 241 (372)
T ss_dssp EEEEEETTTEEEEEEGGGT-TEEEEEE-----------------------------------------------------
T ss_pred EEEEEeCCCEEEEEECCCC-ceeEEEc-----------------------------------------------------
Confidence 9999999999999999876 2322221
Q ss_pred CCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCc
Q 001248 712 ADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKA 791 (1114)
Q Consensus 712 ~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 791 (1114)
.|...|.+++|+|++..++++ .|+.+++|++...
T Consensus 242 -------------------------------------~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~-------- 275 (372)
T 1k8k_C 242 -------------------------------------SETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSA-------- 275 (372)
T ss_dssp -------------------------------------CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETT--------
T ss_pred -------------------------------------cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCc--------
Confidence 155678899999999877766 8899999987520
Q ss_pred cccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEeCCeEEEE---EcCCCccc------ccc-CCCCCC
Q 001248 792 TASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLF---NMMTFKTM------ATF-MPPPPA 861 (1114)
Q Consensus 792 ~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~dg~i~iw---d~~~~~~~------~~~-~~~~~~ 861 (1114)
.+..... +.-... ..-..+....+++| +... ... ..+ .+|...
T Consensus 276 ------------~~~~~~~------~~~~~~--------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~ 328 (372)
T 1k8k_C 276 ------------AGKLSFG------GRLDVP--------KQSSQRGLTARERFQNLDKKA-SSEGSAAAGAGLDSLHKNS 328 (372)
T ss_dssp ------------TTEEEEC------CCCCCC----------------CHHHHHHHCCCCC----------CCCSSSSSSC
T ss_pred ------------CceEEEe------eccCcc--------ccchhhhcchhhhhhhccccc-ccccCccccccccccccCC
Confidence 0111000 000000 00011113345555 4322 222 333 489999
Q ss_pred eEEEEEecCCC---cEEEEEeCCCcEEEEEcccce
Q 001248 862 ATFLAFHPQDN---NIIAIGMDDSSIQIYNVRVDE 893 (1114)
Q Consensus 862 i~~l~~sp~d~---~~la~g~~dg~v~iwd~~~~~ 893 (1114)
|++++|++.++ .+|++|+.||.|++||+.+++
T Consensus 329 v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 329 VSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp EEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred cceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 99999775477 999999999999999998764
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-31 Score=295.07 Aligned_cols=282 Identities=16% Similarity=0.192 Sum_probs=230.4
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw 494 (1114)
.+.+|.+.|.+++| |++++|++|+.||.|++||+.+++... .+..|...|.+++|+|+++ ++++++.|+.|++|
T Consensus 13 ~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 13 TLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGT---VVYTGQGFLNSVCYDSEKE--LLLFGGKDTMINGV 86 (313)
T ss_dssp EECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEE---EEEECSSCEEEEEEETTTT--EEEEEETTSCEEEE
T ss_pred HhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEE---EeecCCccEEEEEECCCCC--EEEEecCCCeEEEE
Confidence 57899999999999 999999999999999999998877555 5778999999999999999 79999999999999
Q ss_pred eCCCC---cceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEee
Q 001248 495 DATNG---AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG 571 (1114)
Q Consensus 495 d~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~ 571 (1114)
++... +.+..+.+|...|.+++| ++.++++++.|+.|++||
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~l~~~~~d~~i~~~d-------------------------------- 130 (313)
T 3odt_A 87 PLFATSGEDPLYTLIGHQGNVCSLSF----QDGVVISGSWDKTAKVWK-------------------------------- 130 (313)
T ss_dssp ETTCCTTSCC-CEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEE--------------------------------
T ss_pred EeeecCCCCcccchhhcccCEEEEEe----cCCEEEEEeCCCCEEEEc--------------------------------
Confidence 98754 556777888888888876 224566666666666664
Q ss_pred ecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcC-CCCEEEEEeCCCcEEEEEccCC
Q 001248 572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 572 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
.++.+..+..+ ...+.++.|+| ++.++++++.||.|++||....
T Consensus 131 ---------------------------------~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 175 (313)
T 3odt_A 131 ---------------------------------EGSLVYNLQAH--NASVWDAKVVSFSENKFLTASADKTIKLWQNDKV 175 (313)
T ss_dssp ---------------------------------TTEEEEEEECC--SSCEEEEEEEETTTTEEEEEETTSCEEEEETTEE
T ss_pred ---------------------------------CCcEEEecccC--CCceeEEEEccCCCCEEEEEECCCCEEEEecCce
Confidence 22333334333 34678888888 8999999999999999982211
Q ss_pred ccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEE
Q 001248 651 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 730 (1114)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~ 730 (1114)
...+.
T Consensus 176 ---~~~~~------------------------------------------------------------------------ 180 (313)
T 3odt_A 176 ---IKTFS------------------------------------------------------------------------ 180 (313)
T ss_dssp ---EEEEC------------------------------------------------------------------------
T ss_pred ---EEEEe------------------------------------------------------------------------
Confidence 10000
Q ss_pred eccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccc
Q 001248 731 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 810 (1114)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~ 810 (1114)
T Consensus 181 -------------------------------------------------------------------------------- 180 (313)
T 3odt_A 181 -------------------------------------------------------------------------------- 180 (313)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEc
Q 001248 811 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV 889 (1114)
Q Consensus 811 ~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~ 889 (1114)
..|...+.+++++|++. +++++ ||.|++||+.+++.+..+.+|...|++++|+| ++ .|++++.||.|++||+
T Consensus 181 ----~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~v~iwd~ 253 (313)
T 3odt_A 181 ----GIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLP-NG-DIVSCGEDRTVRIWSK 253 (313)
T ss_dssp ----SSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TS-CEEEEETTSEEEEECT
T ss_pred ----ccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEec-CC-CEEEEecCCEEEEEEC
Confidence 00456678888888888 66666 89999999999999999999999999999999 77 5889999999999999
Q ss_pred ccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc
Q 001248 890 RVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEK 936 (1114)
Q Consensus 890 ~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~ 936 (1114)
.+++.+..+..|...|++++|+|+++ +++++.|+.|++|++.+++.
T Consensus 254 ~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 254 ENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRW 299 (313)
T ss_dssp TTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGC
T ss_pred CCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCce
Confidence 99999999999999999999999998 66799999999999998554
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-32 Score=307.76 Aligned_cols=255 Identities=14% Similarity=0.191 Sum_probs=203.8
Q ss_pred eeEecc-CCCCceEEEEcCCCCeEEEEEec---CCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEE
Q 001248 351 VTRTLN-QGSSPMSMDFHPVQQTLLLVGTN---VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV 426 (1114)
Q Consensus 351 ~~~~~~-h~~~v~~v~~spdg~~ll~tg~~---dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l 426 (1114)
+...+. |.+.|++++|+|++.+++++|+. ||.|+|||+.+++.... ...+|...|.++
T Consensus 10 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~------------------~~~~~~~~v~~~ 71 (357)
T 3i2n_A 10 IAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL------------------REIEKAKPIKCG 71 (357)
T ss_dssp EEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE------------------EEEEESSCEEEE
T ss_pred hhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce------------------eeecccCcEEEE
Confidence 334444 99999999999999888888887 99999999998876542 133688899999
Q ss_pred EEcCC---CCeEEEEeCCCeEEEEEccCCc-eeeeeEeeccccCCeeEEE------ecCCCCeeEEEEecCCCCEEEEeC
Q 001248 427 IWSPD---GSLFGVAYSRHIVQIYSYHGGD-EVRQHLEIDAHVGGVNDIA------FSHPNKQLCVITCGDDKTIKVWDA 496 (1114)
Q Consensus 427 ~~spd---g~~las~~~dg~i~iwd~~~~~-~~~~~~~l~~h~~~V~~v~------~s~d~~~~~l~s~~~d~~i~iwd~ 496 (1114)
+|+|+ |++|++|+.||.|++||+.+++ .+. .+.+|...|.+++ |+|+++ +|++++.|+.|++||+
T Consensus 72 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~~d~~i~vwd~ 146 (357)
T 3i2n_A 72 TFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVY---SVKGHKEIINAIDGIGGLGIGEGAP--EIVTGSRDGTVKVWDP 146 (357)
T ss_dssp ECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSE---EECCCSSCEEEEEEESGGGCC-CCC--EEEEEETTSCEEEECT
T ss_pred EEcCCCCCCceEEEecCCCeEEEEeCCCCCccEE---EEEecccceEEEeeccccccCCCcc--EEEEEeCCCeEEEEeC
Confidence 99998 7999999999999999999887 444 6789999999995 578888 7999999999999999
Q ss_pred CCCc-ceeEeecccc----CEEEEeec--cCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEE
Q 001248 497 TNGA-KQYIFEGHEA----PVYSVCPH--HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY 569 (1114)
Q Consensus 497 ~~~~-~~~~~~~h~~----~v~~~~~~--~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~ 569 (1114)
.+++ .+..+..|.+ .+.+++|. .++++.++++++.|+.|++||+++..... ...+...
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~-------------- 211 (357)
T 3i2n_A 147 RQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNG-------------- 211 (357)
T ss_dssp TSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE-EEECSSC--------------
T ss_pred CCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee-ecCCCCc--------------
Confidence 9987 6788876655 78888842 24566899999999999999998755422 2223334
Q ss_pred eeecccceeEEEecC---CCCEEEEEeCCCeEEEEECCCcceEEEec---cCCCCCCcCeEEEcCCCC-EEEEEeCCCcE
Q 001248 570 QGFRKRSLGVVQFDT---TKNRFLAAGDDFSIKFWDMDSVQLLTSID---ADGGLPASPRIRFNKDGC-LLAVSTNDNGI 642 (1114)
Q Consensus 570 ~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~s~d~~-~l~~~~~dg~i 642 (1114)
+..++|+| +++++++++.||.|++||+.+++.+..+. ...+...|.+++|+|++. ++++++.||.|
T Consensus 212 -------v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 284 (357)
T 3i2n_A 212 -------VCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGL 284 (357)
T ss_dssp -------EEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred -------eEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcE
Confidence 44555555 56689999999999999998876554443 113355799999999998 89999999999
Q ss_pred EEEEccCC
Q 001248 643 KILATSDG 650 (1114)
Q Consensus 643 ~iwd~~~~ 650 (1114)
++||+.++
T Consensus 285 ~iwd~~~~ 292 (357)
T 3i2n_A 285 HLWKYEYP 292 (357)
T ss_dssp EEEEEECC
T ss_pred EEeecCCC
Confidence 99999876
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-32 Score=306.03 Aligned_cols=244 Identities=12% Similarity=0.092 Sum_probs=205.0
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcc--eeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCe
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE--RLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 434 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 434 (1114)
|.+.|++++|+|+|++ |++|+.||.|++||+.+++ .+. .+.+|...|.+++|+|++++
T Consensus 7 ~~~~i~~~~~s~~~~~-l~~~~~d~~v~i~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~ 66 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQ-IAICPNNHEVHIYEKSGNKWVQVH-------------------ELKEHNGQVTGVDWAPDSNR 66 (372)
T ss_dssp CSSCCCEEEECTTSSE-EEEECSSSEEEEEEEETTEEEEEE-------------------EEECCSSCEEEEEEETTTTE
T ss_pred cCCCeEEEEECCCCCE-EEEEeCCCEEEEEeCCCCcEEeee-------------------eecCCCCcccEEEEeCCCCE
Confidence 8899999999999995 9999999999999999886 333 36789999999999999999
Q ss_pred EEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcc---ee-Eeecccc
Q 001248 435 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK---QY-IFEGHEA 510 (1114)
Q Consensus 435 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~---~~-~~~~h~~ 510 (1114)
|++++.||.|++||+.+++... ...+.+|...|.+++|+|+++ ++++++.|+.|++||+..+.. .. ...+|..
T Consensus 67 l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~ 143 (372)
T 1k8k_C 67 IVTCGTDRNAYVWTLKGRTWKP-TLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS 143 (372)
T ss_dssp EEEEETTSCEEEEEEETTEEEE-EEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS
T ss_pred EEEEcCCCeEEEEECCCCeeee-eEEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecccCC
Confidence 9999999999999999886443 334578999999999999999 799999999999999998773 23 3367899
Q ss_pred CEEEEeeccCCCceEEEEEecCCeEEEEEcCC------------------CCCeeeecCCCCeeEEEEEecCCCeEEeee
Q 001248 511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDN------------------LGSRVDYEAPGRWCTTMAYSADGTRTYQGF 572 (1114)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~------------------~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~ 572 (1114)
.|.+++|++ ++.++++++.|+.|++||++. ......+..+..
T Consensus 144 ~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 203 (372)
T 1k8k_C 144 TVLSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG------------------ 203 (372)
T ss_dssp CEEEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS------------------
T ss_pred CeeEEEEcC--CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCC------------------
Confidence 999999876 457999999999999999753 222223333333
Q ss_pred cccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccC
Q 001248 573 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 649 (1114)
Q Consensus 573 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~ 649 (1114)
.+..++|+|+++++++++.|+.|++||+.+++.+..+..+. ..+.+++|+|++.+++++ .|+.|++|++.+
T Consensus 204 ---~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 204 ---WVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET--LPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp ---CEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSS--CCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred ---eEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCC--CCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 45556666666689999999999999999999999998664 479999999999988887 899999999987
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=309.88 Aligned_cols=295 Identities=13% Similarity=0.164 Sum_probs=216.4
Q ss_pred cCCeeEEEecCCCCeeEEEEecCCC-------CEEEEeCCCCcce----------eEeeccccCEEEEeeccCCCceEEE
Q 001248 465 VGGVNDIAFSHPNKQLCVITCGDDK-------TIKVWDATNGAKQ----------YIFEGHEAPVYSVCPHHKENIQFIF 527 (1114)
Q Consensus 465 ~~~V~~v~~s~d~~~~~l~s~~~d~-------~i~iwd~~~~~~~----------~~~~~h~~~v~~~~~~~~~~~~~l~ 527 (1114)
..+|++++|+||++ +|++||.|. .|++|++..+... ..+.+|...|.++++. + ..++
T Consensus 14 g~PV~sv~fs~dg~--~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~--~~~~ 87 (365)
T 4h5i_A 14 GYPAYGAKFLNNDT--LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--K--GIIL 87 (365)
T ss_dssp SSCEEEEEEEETTE--EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--T--TEEE
T ss_pred CCCEEEEEEeCCCc--EEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--C--CEEE
Confidence 35899999999999 789987543 4999998765421 2356677777777642 2 4666
Q ss_pred EEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcc
Q 001248 528 STALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 607 (1114)
Q Consensus 528 s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 607 (1114)
+|+.++..++| +++.|+.+++|++....
T Consensus 88 ~g~~~~~~~l~----------------------------------------------------s~~~d~~~r~~~~~~~~ 115 (365)
T 4h5i_A 88 VGCNENSTKIT----------------------------------------------------QGKGNKHLRKFKYDKVN 115 (365)
T ss_dssp EECCCCHHHHH----------------------------------------------------HTSCCCCEEEEEEETTT
T ss_pred EEECCCccEEE----------------------------------------------------EecCCCcEEEEEecCCC
Confidence 66655443333 34446666777654432
Q ss_pred eE----EEec---cCCCCCCcCeEEEcCCCCEEEEEe--CCCcEEEEEccCCccceeeccccccccccCCCCCCCCccch
Q 001248 608 LL----TSID---ADGGLPASPRIRFNKDGCLLAVST--NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPI 678 (1114)
Q Consensus 608 ~~----~~~~---~~~~~~~v~~~~~s~d~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (1114)
.. .... .......+.+++|||||+++++++ .|++|++||+.++. ....+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~-~~~~~~-------------------- 174 (365)
T 4h5i_A 116 DQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLT-EKFEIE-------------------- 174 (365)
T ss_dssp TEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTE-EEEEEE--------------------
T ss_pred ceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc-EEEEeC--------------------
Confidence 11 1111 112223477899999999987654 68999999998772 222111
Q ss_pred hhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEE
Q 001248 679 SAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLI 758 (1114)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 758 (1114)
|...|.+++
T Consensus 175 -----------------------------------------------------------------------~~~~V~~v~ 183 (365)
T 4h5i_A 175 -----------------------------------------------------------------------TRGEVKDLH 183 (365)
T ss_dssp -----------------------------------------------------------------------CSSCCCEEE
T ss_pred -----------------------------------------------------------------------CCCceEEEE
Confidence 445688999
Q ss_pred EccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-
Q 001248 759 FTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS- 837 (1114)
Q Consensus 759 ~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~- 837 (1114)
|+|+|+++++++.++.+.+|.. ++..... .....|...|.+++|+||++++++++
T Consensus 184 fspdg~~l~s~s~~~~~~~~~~-----------------------~~~~~~~-~~~~~~~~~v~~v~fspdg~~l~~~s~ 239 (365)
T 4h5i_A 184 FSTDGKVVAYITGSSLEVISTV-----------------------TGSCIAR-KTDFDKNWSLSKINFIADDTVLIAASL 239 (365)
T ss_dssp ECTTSSEEEEECSSCEEEEETT-----------------------TCCEEEE-ECCCCTTEEEEEEEEEETTEEEEEEEE
T ss_pred EccCCceEEeccceeEEEEEec-----------------------cCcceee-eecCCCCCCEEEEEEcCCCCEEEEEec
Confidence 9999999998886655444332 2221111 11123788899999999999999988
Q ss_pred CC----eEEEEEcCCCcc----ccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEe-ecccccCeeEE
Q 001248 838 GG----KISLFNMMTFKT----MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK-LKGHSKRITGL 908 (1114)
Q Consensus 838 dg----~i~iwd~~~~~~----~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~-l~~h~~~V~~l 908 (1114)
|+ .+++|++..... ...+.+|...|++++|+| +|++||+|+.|++|+|||+.+++++.. +.+|...|++|
T Consensus 240 d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v 318 (365)
T 4h5i_A 240 KKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEV 318 (365)
T ss_dssp SSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEE
T ss_pred CCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC-CCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEE
Confidence 65 588899876543 345678899999999999 999999999999999999999999887 47999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCC
Q 001248 909 AFSHALNVLVSSGADSQLCVWSSDGW 934 (1114)
Q Consensus 909 ~~s~d~~~l~s~s~D~~v~iwd~~~~ 934 (1114)
+|||||++|||||.|++|+||++..+
T Consensus 319 ~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 319 TISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99999999999999999999999753
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-32 Score=307.11 Aligned_cols=310 Identities=17% Similarity=0.251 Sum_probs=240.2
Q ss_pred cCCCCceEEEEcCC---CCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCC-
Q 001248 356 NQGSSPMSMDFHPV---QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD- 431 (1114)
Q Consensus 356 ~h~~~v~~v~~spd---g~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd- 431 (1114)
+|.+.|++++|+|+ +..++++++.++.|+|||+.+++.+.... ......|...|.+++|+|+
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~--------------~~~~~~~~~~v~~~~~~~~~ 81 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQ--------------SYVDADADENFYTCAWTYDS 81 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEE--------------EEECSCTTCCEEEEEEEECT
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeee--------------eccccCCCCcEEEEEeccCC
Confidence 59999999999985 55456777778899999999887764311 1112347789999999999
Q ss_pred ---CCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecC-CCCeeEEEEecCCCCEEEEeCCCCcceeEe--
Q 001248 432 ---GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIF-- 505 (1114)
Q Consensus 432 ---g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-- 505 (1114)
|++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+| ++. +|++++.|+.|++||+.+++.+..+
T Consensus 82 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~ 156 (366)
T 3k26_A 82 NTSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGG 156 (366)
T ss_dssp TTCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEEEECS
T ss_pred CCCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEEEecc
Confidence 7799999999999999999988665 6779999999999999 777 7999999999999999999998888
Q ss_pred -eccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCC-------------eEEee
Q 001248 506 -EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT-------------RTYQG 571 (1114)
Q Consensus 506 -~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~-------------~~~~~ 571 (1114)
.+|...|.+++|++ ++.+|++++.||.|++||+++......+.. .+.+++++. .....
T Consensus 157 ~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (366)
T 3k26_A 157 VEGHRDEVLSADYDL--LGEKIMSCGMDHSLKLWRINSKRMMNAIKE------SYDYNPNKTNRPFISQKIHFPDFSTRD 228 (366)
T ss_dssp TTSCSSCEEEEEECT--TSSEEEEEETTSCEEEEESCSHHHHHHHHH------HHTCCGGGCSSCCCCEEECCCSEEECS
T ss_pred cccccCceeEEEECC--CCCEEEEecCCCCEEEEECCCCccccccce------eEEecCCCCcccccceeeccCcccccc
Confidence 78999999999876 557999999999999999987554332221 001111111 01111
Q ss_pred ecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcce--------------EEEeccCCCCCCcCeEEEcCC--CCEEEE
Q 001248 572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL--------------LTSIDADGGLPASPRIRFNKD--GCLLAV 635 (1114)
Q Consensus 572 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~~~~s~d--~~~l~~ 635 (1114)
.+...+.+++|+ ++++++++.|+.|++||+.++.. +..+..+ ...|.+++|+|+ +++|++
T Consensus 229 ~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~l~~ 304 (366)
T 3k26_A 229 IHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS--QCDIWYMRFSMDFWQKMLAL 304 (366)
T ss_dssp SCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS--SCCSSCCCCEECTTSSEEEE
T ss_pred CCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc--CCcEEEEEEcCCCCCcEEEE
Confidence 134467777777 66899999999999999987654 5666655 447999999999 999999
Q ss_pred EeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCc
Q 001248 636 STNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVK 715 (1114)
Q Consensus 636 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1114)
++.||.|++||+.++........
T Consensus 305 ~~~dg~i~vwd~~~~~~~~~~~~--------------------------------------------------------- 327 (366)
T 3k26_A 305 GNQVGKLYVWDLEVEDPHKAKCT--------------------------------------------------------- 327 (366)
T ss_dssp ECTTSCEEEEECCSSSGGGCEEE---------------------------------------------------------
T ss_pred EecCCcEEEEECCCCCCccccce---------------------------------------------------------
Confidence 99999999999987632110000
Q ss_pred ccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeec
Q 001248 716 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQ 781 (1114)
Q Consensus 716 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~ 781 (1114)
.+....+...|.+++|+|+++.|++++.||.|++|++.
T Consensus 328 ----------------------------~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 328 ----------------------------TLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp ----------------------------EECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ----------------------------EEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 00001136889999999999999999999999999974
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-32 Score=309.37 Aligned_cols=251 Identities=11% Similarity=0.096 Sum_probs=208.9
Q ss_pred cCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcc------eeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEc
Q 001248 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE------RLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 429 (1114)
Q Consensus 356 ~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~------~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 429 (1114)
+|.+.|++++|+| + +|++|+.||.|+|||+.+++ ... .+.+|...|.+++|+
T Consensus 14 ~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~ 71 (397)
T 1sq9_A 14 AHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKDKSY-------------------SHFVHKSGLHHVDVL 71 (397)
T ss_dssp CSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGGGEE-------------------EEECCTTCEEEEEEE
T ss_pred hhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCCCcce-------------------EEecCCCcEEEEEEe
Confidence 4999999999999 5 59999999999999999876 222 366899999999999
Q ss_pred CC----C---CeEEEEeCCCeEEEEEccCCce-----eeeeEeeccc-----cCCeeEEEec----CCCCeeE-EEEecC
Q 001248 430 PD----G---SLFGVAYSRHIVQIYSYHGGDE-----VRQHLEIDAH-----VGGVNDIAFS----HPNKQLC-VITCGD 487 (1114)
Q Consensus 430 pd----g---~~las~~~dg~i~iwd~~~~~~-----~~~~~~l~~h-----~~~V~~v~~s----~d~~~~~-l~s~~~ 487 (1114)
|+ | ++|++++.||.|++||+.+++. +. .+.+| ...|.+++|+ |+++ + |++++.
T Consensus 72 ~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~~~~~ 146 (397)
T 1sq9_A 72 QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFE---KLDLLDSDMKKHSFWALKWGASNDRLLS--HRLVATDV 146 (397)
T ss_dssp EEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEE---EECCSCTTGGGSCEEEEEEECCC----C--EEEEEEET
T ss_pred cccccCCccccEEEEEcCCCCEEEEEccCCcccccccce---eecccccccCCCcEEEEEEeeccCCCCc--eEEEEEeC
Confidence 99 9 9999999999999999998875 44 57777 5899999999 9999 7 999999
Q ss_pred CCCEEEEeCCC------Cccee-----Eee-------ccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeee
Q 001248 488 DKTIKVWDATN------GAKQY-----IFE-------GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY 549 (1114)
Q Consensus 488 d~~i~iwd~~~------~~~~~-----~~~-------~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 549 (1114)
|+.|++||+.+ ++.+. .+. .|...|.+++|++ ++ ++++++.|+.|++||+++......+
T Consensus 147 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~~~~~ 223 (397)
T 1sq9_A 147 KGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRPLYNF 223 (397)
T ss_dssp TSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEEEEEE
T ss_pred CCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC--Cc-eEEEEeCCCcEEEEECCCCceeEEE
Confidence 99999999998 77777 774 4889999999865 55 9999999999999999987666666
Q ss_pred cC---C---CCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCC---CeEEEEECCCcceEEEeccCC----
Q 001248 550 EA---P---GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---FSIKFWDMDSVQLLTSIDADG---- 616 (1114)
Q Consensus 550 ~~---~---~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~---- 616 (1114)
.. | ...+.+++|+ |++++|++++.| +.|++||+.+++.+..+....
T Consensus 224 ~~~~~h~~~~~~i~~i~~~---------------------~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~ 282 (397)
T 1sq9_A 224 ESQHSMINNSNSIRSVKFS---------------------PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQ 282 (397)
T ss_dssp ECCC---CCCCCEEEEEEC---------------------SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-----
T ss_pred eccccccccCCccceEEEC---------------------CCCCEEEEEecCCCCceEEEEECCCCcccceeccCccccc
Confidence 55 4 5555555554 455589999999 999999999999999887610
Q ss_pred -------CCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeecc
Q 001248 617 -------GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE 658 (1114)
Q Consensus 617 -------~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 658 (1114)
+...|.+++|+|++++|++++.||.|++||+.++ +.+..+.
T Consensus 283 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~ 330 (397)
T 1sq9_A 283 ASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK-ERITTLN 330 (397)
T ss_dssp ---CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEEE
T ss_pred ccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC-ceeEEEe
Confidence 2457999999999999999999999999999887 4554443
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-33 Score=315.12 Aligned_cols=314 Identities=8% Similarity=-0.007 Sum_probs=231.8
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
-...|.+++|||||+ ++|+++.|++|+ |...++ .+.+|...|.+++|+|+|
T Consensus 14 ~~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~----------------------~l~gh~~~v~~V~FsPdg---- 64 (588)
T 2j04_A 14 FEDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAK----------------------DINCNSKNLFHVKEFPLE---- 64 (588)
T ss_dssp CSSSSCCEEECTTSC-EEEECSSSEEEE--EECCCS----------------------CCSSBGGGTEEEEEECCC----
T ss_pred hhccEEEEEECCCCC-EEEEEcCCceee--cccccc----------------------eecCCCccEEEEEECCCC----
Confidence 458899999999999 599999999999 654442 247899999999999999
Q ss_pred EEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeecccc-----C
Q 001248 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA-----P 511 (1114)
Q Consensus 437 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~-----~ 511 (1114)
.++.+.+|+.+....+ .+ .|...|.+++|||||+ .|++++.||+|++||.+. ++..+. |.. .
T Consensus 65 ---~~~~~~~~~~~~~~~~----~~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~s 131 (588)
T 2j04_A 65 ---FENKLDFELAQQNGLL----NS-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRT 131 (588)
T ss_dssp ---CCCTTTTSCCCSSCSS----TT-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTC
T ss_pred ---CcceEEEEeCCCceEe----ec-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc--eeeecc-CCCcccccc
Confidence 4565555554332211 22 5688999999999999 799999999999999544 666777 665 4
Q ss_pred EEEEeeccCCCceEEEEEecCCeEEEEEcCCCCC-------eeee----cCCCCeeEEEEEecCCCeEEeeecccceeEE
Q 001248 512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS-------RVDY----EAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 580 (1114)
Q Consensus 512 v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-------~~~~----~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~ 580 (1114)
|.+++|+| ||++|++|+.||+|++||+.++.. ...+ .+|... +..+
T Consensus 132 v~svafSP--DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~---------------------V~sV 188 (588)
T 2j04_A 132 YHCFEWNP--IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDW---------------------VTHI 188 (588)
T ss_dssp EEEEEECS--SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCC---------------------EEEE
T ss_pred EEEEEEcC--CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeeccccccccc---------------------EEEE
Confidence 99999865 668999999999999999987542 2232 233334 4455
Q ss_pred EecCCCCEEEEEeCCCeEEEEECCCcce---EEEec-cCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceee
Q 001248 581 QFDTTKNRFLAAGDDFSIKFWDMDSVQL---LTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRT 656 (1114)
Q Consensus 581 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~-~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~ 656 (1114)
+|+|+| +++++.|++|++||+.++.. ..++. .| ...|.+++|+ |+.|++++ +++|++||+.++......
T Consensus 189 awSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h--~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~ 261 (588)
T 2j04_A 189 VWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNAS--RRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLK 261 (588)
T ss_dssp EEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCC--SSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEE
T ss_pred EEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccc--cCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEE
Confidence 555565 78889999999999988774 34553 33 3579999999 68999887 699999998876321111
Q ss_pred ccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCC
Q 001248 657 FENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSE 736 (1114)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~ 736 (1114)
+
T Consensus 262 ~------------------------------------------------------------------------------- 262 (588)
T 2j04_A 262 T------------------------------------------------------------------------------- 262 (588)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 1
Q ss_pred CccccccccCccccccceEEEEE--ccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCC
Q 001248 737 PNQCRSLRLPENLRATKISRLIF--TNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 814 (1114)
Q Consensus 737 ~~~~~~~~~~~~~~~~~i~~l~~--s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~ 814 (1114)
+|...+..++| +|++..++++.++|+ ++|...
T Consensus 263 ------------gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d--------------------------------- 296 (588)
T 2j04_A 263 ------------GSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED--------------------------------- 296 (588)
T ss_dssp ------------SCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS---------------------------------
T ss_pred ------------CCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec---------------------------------
Confidence 26677888899 999998999999999 988642
Q ss_pred CCCCCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEe
Q 001248 815 SNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM 879 (1114)
Q Consensus 815 ~~~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~ 879 (1114)
.++++||+..+++. |+++++|+..... ...+.+ ...|.+++||| ||+++|+++
T Consensus 297 --------~~~~spd~~l~a~~-d~~v~lW~~~g~~-l~~~~~-~~~I~~va~SP-dG~~lA~~~ 349 (588)
T 2j04_A 297 --------ELHVTADNIIAPYL-EKKFKKWSTIWNE-FNNYET-TLVIHGISLSP-DGYSIAIVY 349 (588)
T ss_dssp --------SEEEECCCSSHHHH-HHHHHHTTTTTTS-SSSSCC-EEEEEEEEECT-TSSEEEEEE
T ss_pred --------cEEECCCceEEEEc-CCEEEEEECCCCc-eeeecc-ceEEEEEEECC-CCCEEEEEE
Confidence 24577777666664 6777777764333 334443 45577777777 777777665
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-33 Score=315.87 Aligned_cols=257 Identities=14% Similarity=0.120 Sum_probs=195.3
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcc--eeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCe
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE--RLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 434 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 434 (1114)
+.+.|++++|+|+|++ |++|+.||.|+|||+.++. ... .+.+|...|.+++|+|++++
T Consensus 10 ~~~~v~~~~~s~~g~~-l~~~~~d~~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~~~ 69 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTE-FVTTTATNQVELYEQDGNGWKHAR-------------------TFSDHDKIVTCVDWAPKSNR 69 (377)
T ss_dssp CSSCCSCCEECSSSSE-EECCCSSSCBCEEEEETTEEEECC-------------------CBCCCSSCEEEEEECTTTCC
T ss_pred CCCcEEEEEECCCCCE-EEEecCCCEEEEEEccCCceEEEE-------------------EEecCCceEEEEEEeCCCCE
Confidence 6779999999999995 9999999999999999873 322 47889999999999999999
Q ss_pred EEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCc---ceeEeec-ccc
Q 001248 435 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA---KQYIFEG-HEA 510 (1114)
Q Consensus 435 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~-h~~ 510 (1114)
|++++.|++|++||+.+++.......+.+|...|.+++|+|+++ +|++++.|++|++||+.+++ ....+.+ |..
T Consensus 70 l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~ 147 (377)
T 3dwl_C 70 IVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS 147 (377)
T ss_dssp EEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSSCCS
T ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecccCC
Confidence 99999999999999998773333446788999999999999999 79999999999999999887 4778887 999
Q ss_pred CEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCC--CC--eeEEEEEecCCCeEEeeecccceeEEEecCCC
Q 001248 511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP--GR--WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 586 (1114)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~--~~--~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~ 586 (1114)
.|.+++|++ ++.+|++++.|+.|++||+............ .. ....+. ..+ .+...+.+++|+|++
T Consensus 148 ~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~v~~~~~sp~~ 217 (377)
T 3dwl_C 148 TILSLDWHP--NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVC------AEY--PSGGWVHAVGFSPSG 217 (377)
T ss_dssp CEEEEEECT--TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEE------ECC--CCSSSEEEEEECTTS
T ss_pred CeEEEEEcC--CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhh------hcc--cCCceEEEEEECCCC
Confidence 999999876 5579999999999999999643321110000 00 000000 011 233467777788888
Q ss_pred CEEEEEeCCCeEEEEECCCcce----EEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEcc
Q 001248 587 NRFLAAGDDFSIKFWDMDSVQL----LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 648 (1114)
Q Consensus 587 ~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~ 648 (1114)
++|++++.|+.|++||+.+++. +..+..+ ...|.+++|+|++++|++++.++.+ +|+..
T Consensus 218 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 218 NALAYAGHDSSVTIAYPSAPEQPPRALITVKLS--QLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp SCEEEEETTTEEC-CEECSTTSCEEECCCEECS--SSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CEEEEEeCCCcEEEEECCCCCCcceeeEeecCC--CCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 8999999999999999999887 6666655 4479999999999999998876666 66554
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-31 Score=293.42 Aligned_cols=246 Identities=19% Similarity=0.266 Sum_probs=205.7
Q ss_pred ceeEec-cCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEE
Q 001248 350 TVTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 428 (1114)
Q Consensus 350 ~~~~~~-~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 428 (1114)
+..+.+ +|.+.|++++| |++++ |++|+.||.|++||+.+++... .+..|...|.+++|
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~~-l~s~~~dg~v~vw~~~~~~~~~-------------------~~~~~~~~v~~~~~ 67 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDSK-VASVSRDGTVRLWSKDDQWLGT-------------------VVYTGQGFLNSVCY 67 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETTE-EEEEETTSEEEEEEESSSEEEE-------------------EEEECSSCEEEEEE
T ss_pred HHHHHhhCCCCCcEEEEe-cCCCE-EEEEEcCCcEEEEECCCCEEEE-------------------EeecCCccEEEEEE
Confidence 344444 49999999999 99995 9999999999999998887655 36678999999999
Q ss_pred cCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeecc
Q 001248 429 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH 508 (1114)
Q Consensus 429 spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h 508 (1114)
+|++++|++++.||.|++|++...........+.+|...|.+++| +++ ++++++.|+.|++|| .++.+..+..|
T Consensus 68 ~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d--~~~~~~~~~~~ 141 (313)
T 3odt_A 68 DSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK--EGSLVYNLQAH 141 (313)
T ss_dssp ETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE--TTEEEEEEECC
T ss_pred CCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc--CCcEEEecccC
Confidence 999999999999999999999876544444578899999999999 566 799999999999999 77788899999
Q ss_pred ccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecC-CCCeeEEEEEecCCCeEEeeecccceeEEEecCCCC
Q 001248 509 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA-PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 587 (1114)
Q Consensus 509 ~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~ 587 (1114)
...+.+++|.+. ++.++++++.|+.|++||.. .....+.. +...+.++++++++ .
T Consensus 142 ~~~v~~~~~~~~-~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~i~~~~~~~~~---------------------~ 197 (313)
T 3odt_A 142 NASVWDAKVVSF-SENKFLTASADKTIKLWQND--KVIKTFSGIHNDVVRHLAVVDDG---------------------H 197 (313)
T ss_dssp SSCEEEEEEEET-TTTEEEEEETTSCEEEEETT--EEEEEECSSCSSCEEEEEEEETT---------------------E
T ss_pred CCceeEEEEccC-CCCEEEEEECCCCEEEEecC--ceEEEEeccCcccEEEEEEcCCC---------------------e
Confidence 999999998762 44799999999999999933 33334443 45555555555554 3
Q ss_pred EEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 588 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 588 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
+++++.||.|++||+.+++.+..+..+. ..|.+++|+|++ .|++++.||.|++||+.++
T Consensus 198 -~~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~ 256 (313)
T 3odt_A 198 -FISCSNDGLIKLVDMHTGDVLRTYEGHE--SFVYCIKLLPNG-DIVSCGEDRTVRIWSKENG 256 (313)
T ss_dssp -EEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECTTS-CEEEEETTSEEEEECTTTC
T ss_pred -EEEccCCCeEEEEECCchhhhhhhhcCC--ceEEEEEEecCC-CEEEEecCCEEEEEECCCC
Confidence 8999999999999999999999988664 479999999999 5889999999999998877
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-31 Score=301.61 Aligned_cols=295 Identities=16% Similarity=0.222 Sum_probs=239.7
Q ss_pred CcceeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEE
Q 001248 348 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 427 (1114)
Q Consensus 348 ~~~~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 427 (1114)
|..+....+|.+.+.+..+++++.. +++++.||.|++||+.+++.... ....|...|.+++
T Consensus 81 p~~~~~~~~~~~~~~~~~~~~s~~~-l~~~~~d~~v~lw~~~~~~~~~~------------------~~~~~~~~v~~v~ 141 (401)
T 4aez_A 81 PERVLDAPGIIDDYYLNLLDWSNLN-VVAVALERNVYVWNADSGSVSAL------------------AETDESTYVASVK 141 (401)
T ss_dssp CSEEEECTTCCCCTTCBCEEECTTS-EEEEEETTEEEEEETTTCCEEEE------------------EECCTTCCEEEEE
T ss_pred cceeeeCCCCcCCceEEEEeecCCC-EEEEECCCeEEEeeCCCCcEeEe------------------eecCCCCCEEEEE
Confidence 3444454567666554444444454 66778999999999999887653 1234888999999
Q ss_pred EcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCC-CCcceeEee
Q 001248 428 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQYIFE 506 (1114)
Q Consensus 428 ~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~ 506 (1114)
|+|++++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+ +. ++++|+.|+.|++||+. .+..+..+.
T Consensus 142 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~ 214 (401)
T 4aez_A 142 WSHDGSFLSVGLGNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQ 214 (401)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred ECCCCCEEEEECCCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEc
Confidence 99999999999999999999999988666 678999999999994 55 79999999999999999 566778899
Q ss_pred ccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCC
Q 001248 507 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 586 (1114)
Q Consensus 507 ~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~ 586 (1114)
+|.+.|.+++|++ ++.+|++++.|+.|++||+++......+..+...|.+++|+|++.
T Consensus 215 ~~~~~v~~~~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~-------------------- 272 (401)
T 4aez_A 215 GHSSEVCGLAWRS--DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQS-------------------- 272 (401)
T ss_dssp CCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTST--------------------
T ss_pred CCCCCeeEEEEcC--CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCC--------------------
Confidence 9999999999876 558999999999999999998877777777777788888777664
Q ss_pred CEEEEEe--CCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEE--eCCCcEEEEEccCCccceeecccccc
Q 001248 587 NRFLAAG--DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS--TNDNGIKILATSDGIRLLRTFENLAY 662 (1114)
Q Consensus 587 ~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~ 662 (1114)
..+++++ .|+.|++||+.+++.+..+..+ ..+.+++|+|++++++++ +.||.|++|++.++. .....
T Consensus 273 ~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~-~~~~~----- 343 (401)
T 4aez_A 273 NLLATGGGTMDKQIHFWNAATGARVNTVDAG---SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG-LTKQV----- 343 (401)
T ss_dssp TEEEEECCTTTCEEEEEETTTCCEEEEEECS---SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTE-EEEEE-----
T ss_pred CEEEEecCCCCCEEEEEECCCCCEEEEEeCC---CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcc-ceeEE-----
Confidence 2455554 7999999999999999888643 369999999999999995 489999999987752 11110
Q ss_pred ccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccc
Q 001248 663 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS 742 (1114)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~ 742 (1114)
.+
T Consensus 344 -------------------------------------------------------------------~~----------- 345 (401)
T 4aez_A 344 -------------------------------------------------------------------DI----------- 345 (401)
T ss_dssp -------------------------------------------------------------------EE-----------
T ss_pred -------------------------------------------------------------------Ee-----------
Confidence 00
Q ss_pred cccCccccccceEEEEEccCcceeeecccCceEEEEeecc
Q 001248 743 LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQR 782 (1114)
Q Consensus 743 ~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~ 782 (1114)
.+|...|.+++|+|++..|++++.||.|++|++..
T Consensus 346 -----~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 346 -----PAHDTRVLYSALSPDGRILSTAASDENLKFWRVYD 380 (401)
T ss_dssp -----ECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred -----cCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 12667899999999999999999999999998764
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-32 Score=303.86 Aligned_cols=294 Identities=11% Similarity=0.081 Sum_probs=215.9
Q ss_pred cceEEEEEccCcceeeecccC-------ceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEE
Q 001248 752 TKISRLIFTNSGNAILALASN-------AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF 824 (1114)
Q Consensus 752 ~~i~~l~~s~~~~~l~~~~~d-------g~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v 824 (1114)
.+|.+++|+||++.|++++.+ +.|++|++............ ......+. .|...+.++
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~-------------~~~~~~l~--~~~~~v~s~ 79 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFH-------------ILSEFALE--DNDDSPTAI 79 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEE-------------EEEEEECC--TTSCCCCEE
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeee-------------eeeEEEcc--CCCCceEEE
Confidence 579999999999999998754 35999998643211000000 00000122 266777777
Q ss_pred EEeeCCCEEEEE-----------e-CCeEEEEEcCCCcccc---------ccCCCCCCeEEEEEecCCCcEEEEE--eCC
Q 001248 825 ALSKNDSYVMSA-----------S-GGKISLFNMMTFKTMA---------TFMPPPPAATFLAFHPQDNNIIAIG--MDD 881 (1114)
Q Consensus 825 ~~s~d~~~l~~~-----------~-dg~i~iwd~~~~~~~~---------~~~~~~~~i~~l~~sp~d~~~la~g--~~d 881 (1114)
++ +++.+++| + |+.+++|++.+..... ....+...+.+++||| ||++||++ +.|
T Consensus 80 ~~--~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSp-Dg~~la~as~~~d 156 (365)
T 4h5i_A 80 DA--SKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISR-EGTVAAIASSKVP 156 (365)
T ss_dssp EE--ETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECT-TSSCEEEEESCSS
T ss_pred Ee--CCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcC-CCCEEEEEECCCC
Confidence 65 55666665 2 5679999987543221 1223455689999999 89887654 478
Q ss_pred CcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEc
Q 001248 882 SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH 961 (1114)
Q Consensus 882 g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fs 961 (1114)
++|+|||+.+++++..+. |...|++|+|+|||++|++++.|+ +++|+..+++... .....+|. ..+.+++|+
T Consensus 157 ~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~---~~~~~~~~---~~v~~v~fs 228 (365)
T 4h5i_A 157 AIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIA---RKTDFDKN---WSLSKINFI 228 (365)
T ss_dssp CEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEE---EECCCCTT---EEEEEEEEE
T ss_pred CEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCccee---eeecCCCC---CCEEEEEEc
Confidence 999999999999988886 778899999999999999998665 6666666544321 12223333 368999999
Q ss_pred cCCcEEEE-EeCC----eEEEEEcCCCcee--eeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeC
Q 001248 962 QDQIHFLV-VHET----QLAIFETTKLECV--KQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 962 pdg~~l~~-~~d~----~i~iwd~~~~~~~--~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
|||.++++ +.|+ .+++|++...... ......+|...|++++|||||++||+|+.|++|+|||+.+++.+..+.
T Consensus 229 pdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~ 308 (365)
T 4h5i_A 229 ADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFK 308 (365)
T ss_dssp ETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEET
T ss_pred CCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEec
Confidence 99999998 4555 5888998776542 223345789999999999999999999999999999999999988753
Q ss_pred CCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1035 PSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1035 ~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
.+|... |. +++|+| |+++|++|+.|++|+||+++...
T Consensus 309 ------~gH~~~-V~--~v~fSp-dg~~laS~S~D~tvrvw~ip~~~ 345 (365)
T 4h5i_A 309 ------QAHSFA-IT--EVTISP-DSTYVASVSAANTIHIIKLPLNY 345 (365)
T ss_dssp ------TSSSSC-EE--EEEECT-TSCEEEEEETTSEEEEEECCTTT
T ss_pred ------CcccCC-EE--EEEECC-CCCEEEEEeCCCeEEEEEcCCCC
Confidence 244333 55 999999 79999999999999999997654
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-32 Score=309.10 Aligned_cols=339 Identities=10% Similarity=0.059 Sum_probs=220.6
Q ss_pred ccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCC--ceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEE
Q 001248 416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG--DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 493 (1114)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~--~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~i 493 (1114)
+..|.++|.+++|+|||++||+|+.|+.|+|||+.++ +.+. .+.+|...|.+++|+|+++ +|++++.|++|++
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~d~~v~v 81 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHAR---TFSDHDKIVTCVDWAPKSN--RIVTCSQDRNAYV 81 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECC---CBCCCSSCEEEEEECTTTC--CEEEEETTSSEEE
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEE---EEecCCceEEEEEEeCCCC--EEEEEeCCCeEEE
Confidence 3446679999999999999999999999999999987 4333 6889999999999999998 7999999999999
Q ss_pred EeCCCCc---ceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCC---eeeecC-CCCeeEEEEEecCCC
Q 001248 494 WDATNGA---KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS---RVDYEA-PGRWCTTMAYSADGT 566 (1114)
Q Consensus 494 wd~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---~~~~~~-~~~~v~~~~~s~~g~ 566 (1114)
||+.+++ ....+.+|...|.+++|++ ++.+|++++.|+.|++||+++... ...+.. |...|.+++|+|
T Consensus 82 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--- 156 (377)
T 3dwl_C 82 YEKRPDGTWKQTLVLLRLNRAATFVRWSP--NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP--- 156 (377)
T ss_dssp C------CCCCEEECCCCSSCEEEEECCT--TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT---
T ss_pred EEcCCCCceeeeeEecccCCceEEEEECC--CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC---
Confidence 9999887 6777888999999999866 557999999999999999987653 344444 555555555555
Q ss_pred eEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCC------------------cceEEEeccCCCCCCcCeEEEcC
Q 001248 567 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS------------------VQLLTSIDADGGLPASPRIRFNK 628 (1114)
Q Consensus 567 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~------------------~~~~~~~~~~~~~~~v~~~~~s~ 628 (1114)
++++|++++.|+.|++||+.. ++.+..+ .+...|.+++|+|
T Consensus 157 ------------------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~sp 215 (377)
T 3dwl_C 157 ------------------NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY---PSGGWVHAVGFSP 215 (377)
T ss_dssp ------------------TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC---CCSSSEEEEEECT
T ss_pred ------------------CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc---cCCceEEEEEECC
Confidence 445899999999999999853 4444444 3455799999999
Q ss_pred CCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCc
Q 001248 629 DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDV 708 (1114)
Q Consensus 629 d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (1114)
++++|++++.||.|++||+.++......+..
T Consensus 216 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------------------------------------------------- 246 (377)
T 3dwl_C 216 SGNALAYAGHDSSVTIAYPSAPEQPPRALIT------------------------------------------------- 246 (377)
T ss_dssp TSSCEEEEETTTEEC-CEECSTTSCEEECCC-------------------------------------------------
T ss_pred CCCEEEEEeCCCcEEEEECCCCCCcceeeEe-------------------------------------------------
Confidence 9999999999999999999877321110000
Q ss_pred cccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCC
Q 001248 709 RSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSS 788 (1114)
Q Consensus 709 ~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 788 (1114)
+ ..|...|.+++|+|++++|++++.++.+ +|+.........
T Consensus 247 ------------------------------------~--~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~ 287 (377)
T 3dwl_C 247 ------------------------------------V--KLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHT 287 (377)
T ss_dssp ------------------------------------E--ECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCS
T ss_pred ------------------------------------e--cCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEE
Confidence 0 1266789999999999988888777666 665542111000
Q ss_pred CCccccccccccCCCCCcccc-ccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEE
Q 001248 789 GKATASVAPQLWQPPSGIMMT-NDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLA 866 (1114)
Q Consensus 789 ~~~~~~~~~~~w~~~~g~~~~-~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~ 866 (1114)
. .++........ .............++.|++....+.... .|... ........|...|++++
T Consensus 288 ~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-------~~~~~~~~H~~~i~~~~ 351 (377)
T 3dwl_C 288 R---------DLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQ-------SISSLPTVHQNMIATLR 351 (377)
T ss_dssp B---------CCCSCCCCCCBSSSSSBCCCCCC--------------------------------CCCSSSCSSCEEEEE
T ss_pred e---------eecccccccccccccccccccccccccccccccccccchhhccccc-------cccccCccccceeEEEe
Confidence 0 00000000000 0000000112234444444333332222 12211 12233456899999999
Q ss_pred EecCCCc---EEEEEeCCCcEEEEEc
Q 001248 867 FHPQDNN---IIAIGMDDSSIQIYNV 889 (1114)
Q Consensus 867 ~sp~d~~---~la~g~~dg~v~iwd~ 889 (1114)
+.+.++. .|++|+.||.|++||+
T Consensus 352 ~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 352 PYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp EEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccCCCCCceEEEEeecCCCcEEEecC
Confidence 8763444 7999999999999985
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-30 Score=299.21 Aligned_cols=239 Identities=17% Similarity=0.233 Sum_probs=197.7
Q ss_pred CceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEe
Q 001248 360 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY 439 (1114)
Q Consensus 360 ~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 439 (1114)
-.+.|+||+++ +||+|. |++|+|||+.+|+..... .+.+|...|++|+|+|||++||+|+
T Consensus 107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~~-----------------~~~~~~~~V~sv~fspdg~~lasgs 166 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLL-----------------QMEQPGEYISSVAWIKEGNYLAVGT 166 (420)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEE-----------------ECCSTTCCEEEEEECTTSSEEEEEE
T ss_pred cceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEE-----------------EecCCCCcEEEEEECCCCCEEEEEE
Confidence 35789999865 588875 999999999999876521 2467888999999999999999999
Q ss_pred CCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCC-cceeEeeccccCEEEEeec
Q 001248 440 SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPVYSVCPH 518 (1114)
Q Consensus 440 ~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~ 518 (1114)
.||+|+|||+.+++.+. .+.+|...|.+++|+ +. ++++|+.|+.+++||.... ..+.++.+|...+..+.+.
T Consensus 167 ~Dg~v~iWd~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 167 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239 (420)
T ss_dssp TTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEEcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence 99999999999998776 688999999998885 55 7999999999999998864 4567889999999999976
Q ss_pred cCCCceEEEEEecCCeEEEEEcCCCCC----eeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEE--E
Q 001248 519 HKENIQFIFSTALDGKIKAWLYDNLGS----RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA--A 592 (1114)
Q Consensus 519 ~~~~~~~l~s~~~d~~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~--~ 592 (1114)
+ ++.++++++.|+.+++|+..+.+. ......+...|.+++|+|++. +.+++ |
T Consensus 240 ~--~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~--------------------~~la~~~g 297 (420)
T 4gga_A 240 P--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS--------------------NVLATGGG 297 (420)
T ss_dssp T--TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCT--------------------TEEEEEEC
T ss_pred C--CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcc--------------------cEEEEEee
Confidence 5 557999999999999999987653 234455666677777776654 23444 4
Q ss_pred eCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEe--CCCcEEEEEccCC
Q 001248 593 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST--NDNGIKILATSDG 650 (1114)
Q Consensus 593 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--~dg~i~iwd~~~~ 650 (1114)
+.|+.|++||+.+++.+..+..+. .+.++.|+++++.+++++ .|+.|++||+.++
T Consensus 298 s~D~~I~iwd~~t~~~~~~~~~~~---~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~ 354 (420)
T 4gga_A 298 TSDRHIRIWNVCSGACLSAVDAHS---QVCSILWSPHYKELISGHGFAQNQLVIWKYPTM 354 (420)
T ss_dssp TTTCEEEEEETTTTEEEEEEECSS---CEEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred cCCCEEEEEeCCccccceeecccc---ceeeeeecCCCCeEEEEEecCCCEEEEEECCCC
Confidence 579999999999999999887654 488999999999988875 6899999998776
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-30 Score=286.47 Aligned_cols=283 Identities=18% Similarity=0.254 Sum_probs=214.8
Q ss_pred CeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcc
Q 001248 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 501 (1114)
Q Consensus 422 ~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 501 (1114)
..++|+||+++ +||+| .|++|+|||+.+++.++. ..+.+|...|.+++|+|+++ ++++|+.|++|++||++++++
T Consensus 27 y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~-~~~~~~~~~V~~v~~~~~~~--~l~sgs~Dg~v~iw~~~~~~~ 101 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQL-LQMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKR 101 (318)
T ss_dssp TCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEE-EECCSTTCCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEE
T ss_pred cceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEE-EEecCCCCeEEEEEECCCCC--EEEEEECCCcEEEeecCCcee
Confidence 35789999987 77766 589999999999987653 35668889999999999999 799999999999999999999
Q ss_pred eeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEE
Q 001248 502 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581 (1114)
Q Consensus 502 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~ 581 (1114)
+..+.+|...+.++.+. +.++++++.++.+++|+.....
T Consensus 102 ~~~~~~h~~~~~~~~~~----~~~l~s~~~~~~~~~~~~~~~~------------------------------------- 140 (318)
T 4ggc_A 102 LRNMTSHSARVGSLSWN----SYILSSGSRSGHIHHHDVRVAE------------------------------------- 140 (318)
T ss_dssp EEEEECCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSS-------------------------------------
T ss_pred EEEecCccceEEEeecC----CCEEEEEecCCceEeeecCCCc-------------------------------------
Confidence 99999999888776532 2467777777766666554311
Q ss_pred ecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccc
Q 001248 582 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA 661 (1114)
Q Consensus 582 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 661 (1114)
..+..+..| ...+..+.++++++++++++.||.|++||+.+++........
T Consensus 141 -------------------------~~~~~~~~~--~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-- 191 (318)
T 4ggc_A 141 -------------------------HHVATLSGH--SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT-- 191 (318)
T ss_dssp -------------------------CEEEEEECC--SSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEE--
T ss_pred -------------------------eeEEEEcCc--cCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceee--
Confidence 122233333 346788999999999999999999999998776211110000
Q ss_pred cccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCcccc
Q 001248 662 YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCR 741 (1114)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~ 741 (1114)
T Consensus 192 -------------------------------------------------------------------------------- 191 (318)
T 4ggc_A 192 -------------------------------------------------------------------------------- 191 (318)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCc
Q 001248 742 SLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAV 821 (1114)
Q Consensus 742 ~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v 821 (1114)
... +...|
T Consensus 192 -----~~~-------------------------------------------------------------------~~~~v 199 (318)
T 4ggc_A 192 -----FTQ-------------------------------------------------------------------HQGAV 199 (318)
T ss_dssp -----ECC-------------------------------------------------------------------CCSCE
T ss_pred -----ecc-------------------------------------------------------------------cCCce
Confidence 000 23334
Q ss_pred cEEEEeeCCCEE---EEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEE--eCCCcEEEEEcccceEE
Q 001248 822 PCFALSKNDSYV---MSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIG--MDDSSIQIYNVRVDEVK 895 (1114)
Q Consensus 822 ~~v~~s~d~~~l---~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g--~~dg~v~iwd~~~~~~~ 895 (1114)
.++++++++..+ ++++ +++|++||........... +...+..+.|+| ++..++++ +.||.|++||+.+++++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~~~~~sg~~d~~i~iwd~~~~~~~ 277 (318)
T 4ggc_A 200 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSP-HYKELISGHGFAQNQLVIWKYPTMAKV 277 (318)
T ss_dssp EEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEET-TTTEEEEEECTTTCCEEEEETTTCCEE
T ss_pred EEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecc-cccceEEEEEcCCCEEEEEECCCCcEE
Confidence 444444443322 2334 6889999988776655544 567799999999 66666554 48999999999999999
Q ss_pred EeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001248 896 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 933 (1114)
Q Consensus 896 ~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~ 933 (1114)
..+.+|.+.|++|+|+||+++||||+.|++|+|||+..
T Consensus 278 ~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 278 AELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 99999999999999999999999999999999999975
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-30 Score=299.67 Aligned_cols=299 Identities=15% Similarity=0.222 Sum_probs=225.2
Q ss_pred CeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcc
Q 001248 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 501 (1114)
Q Consensus 422 ~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 501 (1114)
.++.|+||++ .+||+|. |++|+|||..+|+... ...+.+|...|++|+|+|+|+ +|++|+.|++|++||+.++++
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~-~~~~~~~~~~V~sv~fspdg~--~lasgs~Dg~v~iWd~~~~~~ 181 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQ-LLQMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKR 181 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEE-EEECCSTTCCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEE-EEEecCCCCcEEEEEECCCCC--EEEEEECCCeEEEEEcCCCcE
Confidence 5778999986 4777775 8999999999998664 335668889999999999999 799999999999999999999
Q ss_pred eeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCe-eeecCCCCeeEEEEEecCCCeEEeeecccceeEE
Q 001248 502 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR-VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 580 (1114)
Q Consensus 502 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~ 580 (1114)
+..+.+|...+.+++++ +.++++|+.|+.+++||....... ..+..|...+..+.++
T Consensus 182 ~~~~~~h~~~v~~~s~~----~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~------------------ 239 (420)
T 4gga_A 182 LRNMTSHSARVGSLSWN----SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA------------------ 239 (420)
T ss_dssp EEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC------------------
T ss_pred EEEEeCCCCceEEEeeC----CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeec------------------
Confidence 99999999999998863 368999999999999998865433 3445555555555554
Q ss_pred EecCCCCEEEEEeCCCeEEEEECCCcce----EEEeccCCCCCCcCeEEEcCCC-CEEEEE--eCCCcEEEEEccCCccc
Q 001248 581 QFDTTKNRFLAAGDDFSIKFWDMDSVQL----LTSIDADGGLPASPRIRFNKDG-CLLAVS--TNDNGIKILATSDGIRL 653 (1114)
Q Consensus 581 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~s~d~-~~l~~~--~~dg~i~iwd~~~~~~~ 653 (1114)
++++++++++.|+.+++|+..+++. +.....+ ...|.+++|+|++ .+++++ +.|++|++||+.++. .
T Consensus 240 ---~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~--~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~-~ 313 (420)
T 4gga_A 240 ---PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH--QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA-C 313 (420)
T ss_dssp ---TTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCC--SSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE-E
T ss_pred ---CCCCeeeeeeccccceEEeeccccccceeeeeeccc--CCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc-c
Confidence 4455899999999999999987653 3344433 4578999999955 555553 578999999987661 1
Q ss_pred eeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEecc
Q 001248 654 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 733 (1114)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~ 733 (1114)
...+.
T Consensus 314 ~~~~~--------------------------------------------------------------------------- 318 (420)
T 4gga_A 314 LSAVD--------------------------------------------------------------------------- 318 (420)
T ss_dssp EEEEE---------------------------------------------------------------------------
T ss_pred ceeec---------------------------------------------------------------------------
Confidence 11110
Q ss_pred CCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCC
Q 001248 734 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 813 (1114)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~ 813 (1114)
T Consensus 319 -------------------------------------------------------------------------------- 318 (420)
T 4gga_A 319 -------------------------------------------------------------------------------- 318 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCccEEEEeeCCCEEEEEe---CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcc
Q 001248 814 DSNPEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 890 (1114)
Q Consensus 814 ~~~~~~~v~~v~~s~d~~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~ 890 (1114)
+...+.++.++++++.+++++ |+.|+|||+.+++++.++.+|...|++++|+| ++++||+|+.||+|+|||+.
T Consensus 319 ---~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~sp-dg~~l~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 319 ---AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGATVASAAADETLRLWRCF 394 (420)
T ss_dssp ---CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEETTTEEEEECCS
T ss_pred ---cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEECC
Confidence 223456677777777777653 78999999999999999999999999999999 99999999999999999998
Q ss_pred cceEEEeecccccCeeEEEEcC
Q 001248 891 VDEVKSKLKGHSKRITGLAFSH 912 (1114)
Q Consensus 891 ~~~~~~~l~~h~~~V~~l~~s~ 912 (1114)
..........+...+....|..
T Consensus 395 ~~~~~~~~~~~~~~~~~~s~~~ 416 (420)
T 4gga_A 395 ELDPARRREREKASAAKSSLIH 416 (420)
T ss_dssp CSSCC-----------------
T ss_pred CCCccchhhhccCCccccccCC
Confidence 7666666665655554444433
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-31 Score=285.97 Aligned_cols=248 Identities=11% Similarity=0.070 Sum_probs=202.9
Q ss_pred CCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCC--CccccccCCCCCCeEEEEEecC-CCcEEEEEeCCCcEEEEEccc
Q 001248 816 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT--FKTMATFMPPPPAATFLAFHPQ-DNNIIAIGMDDSSIQIYNVRV 891 (1114)
Q Consensus 816 ~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~--~~~~~~~~~~~~~i~~l~~sp~-d~~~la~g~~dg~v~iwd~~~ 891 (1114)
+|...|.+++|+|+|++|++++ |++|+|||+.+ .+.+.++.+|...|.+++|+++ ++++||+|+.||+|++||+.+
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~ 86 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN 86 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSS
T ss_pred CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCC
Confidence 3999999999999999999999 99999999974 4677889999999999999862 388999999999999999988
Q ss_pred ce--EEEeecccccCeeEEEEcCC--CCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccC----
Q 001248 892 DE--VKSKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD---- 963 (1114)
Q Consensus 892 ~~--~~~~l~~h~~~V~~l~~s~d--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspd---- 963 (1114)
++ .+..+.+|...|++++|+|+ +.+|++++.|++|++||+.+..... .....+|. ..|.+++|+|+
T Consensus 87 ~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~---~~~~~~h~---~~v~~~~~~p~~~~~ 160 (297)
T 2pm7_B 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS---PIIIDAHA---IGVNSASWAPATIEE 160 (297)
T ss_dssp SCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC---CEEEECCS---SCEEEEEECCCC---
T ss_pred CceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee---eeeeeccc---CccceEeecCCcccc
Confidence 74 56778899999999999998 8999999999999999998753211 12233444 47899999997
Q ss_pred ---------CcEEEE-EeCCeEEEEEcCCCc----eeeeeecCCCCcCeeEEEECCCC---CEEEEEEcCCeEEEEEcCC
Q 001248 964 ---------QIHFLV-VHETQLAIFETTKLE----CVKQWVPRESSAPITHATFSCDS---QLVYACFLDATVCVFSAAN 1026 (1114)
Q Consensus 964 ---------g~~l~~-~~d~~i~iwd~~~~~----~~~~~~~~~h~~~v~~l~~s~dg---~~l~s~s~Dg~I~vwd~~~ 1026 (1114)
+++|++ +.|+.|++||+.+++ ....+ .+|...|.+++|+|++ .+|++++.|++|+|||+.+
T Consensus 161 ~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l--~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL--EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp ---------CCEEEEEETTSCEEEEEEETTTTEEEEEEEE--CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred cccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEe--cCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence 568888 689999999998776 33333 4899999999999995 8999999999999999987
Q ss_pred Cee--eEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccC
Q 001248 1027 LKL--RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1027 ~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~ 1079 (1114)
+.. ..... ...+| ...+. +++|+| ++++|++++.||+|++|+...
T Consensus 239 ~~~~~~~~~~----~~~~~-~~~v~--~~~~s~-~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 239 EQGPWKKTLL----KEEKF-PDVLW--RASWSL-SGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp TTSCCEEEES----SSSCC-SSCEE--EEEECS-SSCCEEEEETTSCEEEEEECT
T ss_pred CCCccceeee----ecccC-CCcEE--EEEECC-CCCEEEEEcCCCcEEEEEECC
Confidence 531 11111 01122 22244 899999 689999999999999999864
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-30 Score=298.49 Aligned_cols=290 Identities=15% Similarity=0.171 Sum_probs=221.0
Q ss_pred cCCCCC--eeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE
Q 001248 417 KDPGVS--VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1114)
Q Consensus 417 ~~h~~~--V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw 494 (1114)
.+|... +.+++|++ ..+++++.|+.|++||+.+++..... ...|...|.+++|+|+++ +|++|+.||.|++|
T Consensus 88 ~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~--~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~iw 161 (401)
T 4aez_A 88 PGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALA--ETDESTYVASVKWSHDGS--FLSVGLGNGLVDIY 161 (401)
T ss_dssp TTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEE--ECCTTCCEEEEEECTTSS--EEEEEETTSCEEEE
T ss_pred CCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEee--ecCCCCCEEEEEECCCCC--EEEEECCCCeEEEE
Confidence 355544 45566664 56888889999999999998866522 223889999999999999 79999999999999
Q ss_pred eCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCC-CCeeeecCCCCeeEEEEEecCCCeEEeeec
Q 001248 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFR 573 (1114)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~ 573 (1114)
|+.+++.+..+.+|...|.+++|. +.++++++.||.|++||++.. .....+..|...|.+++|+|++
T Consensus 162 d~~~~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-------- 229 (401)
T 4aez_A 162 DVESQTKLRTMAGHQARVGCLSWN----RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDG-------- 229 (401)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS--------
T ss_pred ECcCCeEEEEecCCCCceEEEEEC----CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCC--------
Confidence 999999999999999999999983 369999999999999999843 3444555566656655555554
Q ss_pred ccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCC-CEEEEEe--CCCcEEEEEccCC
Q 001248 574 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG-CLLAVST--NDNGIKILATSDG 650 (1114)
Q Consensus 574 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~~~~--~dg~i~iwd~~~~ 650 (1114)
+++++++.|+.|++||+.+++.+..+..+ ...|.+++|+|++ .++++++ .|+.|++||+.++
T Consensus 230 -------------~~l~s~~~d~~v~iwd~~~~~~~~~~~~~--~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~ 294 (401)
T 4aez_A 230 -------------LQLASGGNDNVVQIWDARSSIPKFTKTNH--NAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG 294 (401)
T ss_dssp -------------SEEEEEETTSCEEEEETTCSSEEEEECCC--SSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC
T ss_pred -------------CEEEEEeCCCeEEEccCCCCCccEEecCC--cceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC
Confidence 47999999999999999999998888765 4479999999976 5566654 6999999998765
Q ss_pred ccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEE
Q 001248 651 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 730 (1114)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~ 730 (1114)
.....+.
T Consensus 295 -~~~~~~~------------------------------------------------------------------------ 301 (401)
T 4aez_A 295 -ARVNTVD------------------------------------------------------------------------ 301 (401)
T ss_dssp -CEEEEEE------------------------------------------------------------------------
T ss_pred -CEEEEEe------------------------------------------------------------------------
Confidence 1111110
Q ss_pred eccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccc
Q 001248 731 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 810 (1114)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~ 810 (1114)
T Consensus 302 -------------------------------------------------------------------------------- 301 (401)
T 4aez_A 302 -------------------------------------------------------------------------------- 301 (401)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCccEEEEeeCCCEEEE--Ee-CCeEEEEEcCCCccc--cccCCCCCCeEEEEEecCCCcEEEEEeCCCcEE
Q 001248 811 DVTDSNPEEAVPCFALSKNDSYVMS--AS-GGKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQ 885 (1114)
Q Consensus 811 ~~~~~~~~~~v~~v~~s~d~~~l~~--~~-dg~i~iwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~ 885 (1114)
+...+.+++|+|+++++++ |+ ||.|++||+.++... ..+.+|...|.+++|+| ++.+|++++.||.|+
T Consensus 302 ------~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~~~dg~i~ 374 (401)
T 4aez_A 302 ------AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSP-DGRILSTAASDENLK 374 (401)
T ss_dssp ------CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECT-TSSEEEEECTTSEEE
T ss_pred ------CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECC-CCCEEEEEeCCCcEE
Confidence 2234566667777777666 33 677777777765443 33668899999999999 999999999999999
Q ss_pred EEEcccceEEEeec
Q 001248 886 IYNVRVDEVKSKLK 899 (1114)
Q Consensus 886 iwd~~~~~~~~~l~ 899 (1114)
+|++.+++.+....
T Consensus 375 iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 375 FWRVYDGDHVKRPI 388 (401)
T ss_dssp EEECCC--------
T ss_pred EEECCCCccccccc
Confidence 99999988766543
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.2e-30 Score=302.32 Aligned_cols=274 Identities=12% Similarity=0.198 Sum_probs=201.2
Q ss_pred ccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCC------------CC
Q 001248 355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG------------VS 422 (1114)
Q Consensus 355 ~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~------------~~ 422 (1114)
+.|.+.|++++|+|+|++ ||+|+.||.|+|||+.+++....... ... .....+.+|. ..
T Consensus 25 ~~~~~~V~~v~~s~~g~~-la~g~~dg~v~iw~~~~~~~~~~~~~-------~~~-~~~~~~~~h~~~~~~~~~~~~~~~ 95 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGEL-LATGDKGGRVVIFQQEQENKIQSHSR-------GEY-NVYSTFQSHEPEFDYLKSLEIEEK 95 (447)
T ss_dssp CCGGGSEEEEEECSSSSE-EEEEETTSEEEEEEECC-----CCCC-------CCE-EEEEEEECCCCEEEGGGTEEECCC
T ss_pred ccccCcEEEEEECCCCCE-EEEEcCCCeEEEEEecCCCCCCcccc-------cce-eEecccccccccccccccccccCc
Confidence 457899999999999995 99999999999999998763110000 000 0011467887 88
Q ss_pred eeEEEEcCCC--CeEEEEeCCCeEEEEEccCCceee------------------------------------ee-Eeecc
Q 001248 423 VNRVIWSPDG--SLFGVAYSRHIVQIYSYHGGDEVR------------------------------------QH-LEIDA 463 (1114)
Q Consensus 423 V~~l~~spdg--~~las~~~dg~i~iwd~~~~~~~~------------------------------------~~-~~l~~ 463 (1114)
|.+++|+|++ .+|++++.|++|++||+.++.... .. ....+
T Consensus 96 V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (447)
T 3dw8_B 96 INKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA 175 (447)
T ss_dssp CCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC
T ss_pred eEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC
Confidence 9999999998 899999999999999998754311 00 11368
Q ss_pred ccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCC-Cccee-------EeeccccCEEEEeeccCCCceEEEEEecCCeE
Q 001248 464 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-GAKQY-------IFEGHEAPVYSVCPHHKENIQFIFSTALDGKI 535 (1114)
Q Consensus 464 h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~-------~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i 535 (1114)
|...|.+++|+|+++ +|++| .|++|++||+.+ ++.+. .+.+|...|.+++|+++.. .+|++++.||.|
T Consensus 176 h~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~s~~~dg~i 251 (447)
T 3dw8_B 176 HTYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSC-NTFVYSSSKGTI 251 (447)
T ss_dssp CSSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCT-TEEEEEETTSCE
T ss_pred CCcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCC-cEEEEEeCCCeE
Confidence 999999999999999 78888 799999999984 44444 3568999999999875431 699999999999
Q ss_pred EEEEcCCCCC----eeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCC-cceEE
Q 001248 536 KAWLYDNLGS----RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-VQLLT 610 (1114)
Q Consensus 536 ~~wd~~~~~~----~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~ 610 (1114)
++||+++... ...+..+.... ....+ ..+...+..++|+|++++|++++. +.|++||+.+ ++.+.
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~--------~~~~~-~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~ 321 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPS--------NRSFF-SEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVE 321 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-------------CCHH-HHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSC
T ss_pred EEEECcCCccccceeeEeccCCCcc--------ccccc-cccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccc
Confidence 9999998765 44454444300 00000 001124555566666668999988 9999999997 88888
Q ss_pred EeccCCCCCC-------------cCeEEEcCCCCEEEEEeCCCcEEEEEccCCc
Q 001248 611 SIDADGGLPA-------------SPRIRFNKDGCLLAVSTNDNGIKILATSDGI 651 (1114)
Q Consensus 611 ~~~~~~~~~~-------------v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~ 651 (1114)
.+..+..... +..++|+|++++|++++.||.|++||+.++.
T Consensus 322 ~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~ 375 (447)
T 3dw8_B 322 TYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKR 375 (447)
T ss_dssp CEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCC
T ss_pred eeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCc
Confidence 8876642111 2349999999999999999999999999873
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.98 E-value=3.6e-31 Score=291.96 Aligned_cols=226 Identities=19% Similarity=0.303 Sum_probs=175.2
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCC--CCeeEEEEecCCCCEE
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIK 492 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d--~~~~~l~s~~~d~~i~ 492 (1114)
++.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++.. ....+.+|.+.|.+++|+++ ++ +|++|+.|++|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~ 84 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVI 84 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEE
Confidence 57899999999999999999999999999999999987532 23468899999999999874 66 799999999999
Q ss_pred EEeCCCCc--ceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCC---eeeecCCCCeeEEEEEecCCCe
Q 001248 493 VWDATNGA--KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS---RVDYEAPGRWCTTMAYSADGTR 567 (1114)
Q Consensus 493 iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~g~~ 567 (1114)
+||+++++ .+..+.+|...|.+++|+++.++.+|++++.|+.|++||++.... ...+..|...+.+++|+|++..
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 99999874 566788999999999998876678999999999999999987543 2344567778888888887420
Q ss_pred -EEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCc---ceEEEeccCCCCCCcCeEEEcCCC----CEEEEEeCC
Q 001248 568 -TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV---QLLTSIDADGGLPASPRIRFNKDG----CLLAVSTND 639 (1114)
Q Consensus 568 -~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~v~~~~~s~d~----~~l~~~~~d 639 (1114)
.+..+... .....+.+|++++.|+.|++||+..+ +.+..+..| ...|.+++|+|++ .+|++++.|
T Consensus 165 ~~~~~~~~~-----~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h--~~~V~~v~~sp~~~~~~~~las~s~D 237 (316)
T 3bg1_A 165 GSLIDHPSG-----QKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH--SDWVRDVAWAPSIGLPTSTIASCSQD 237 (316)
T ss_dssp ------CCS-----CCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC--SSCEEEEECCCCSSCSCCEEEEEETT
T ss_pred ccccccccc-----cCccccceEEEecCCCeEEEEEeCCCCccceeeecccC--CCceEEEEecCCCCCCCceEEEEcCC
Confidence 00000000 01122468999999999999999755 345555544 5589999999986 899999999
Q ss_pred CcEEEEEccCC
Q 001248 640 NGIKILATSDG 650 (1114)
Q Consensus 640 g~i~iwd~~~~ 650 (1114)
|+|++|++.+.
T Consensus 238 ~~v~iw~~~~~ 248 (316)
T 3bg1_A 238 GRVFIWTCDDA 248 (316)
T ss_dssp CEEEEEECSST
T ss_pred CeEEEEEccCc
Confidence 99999998653
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.9e-30 Score=288.94 Aligned_cols=293 Identities=17% Similarity=0.200 Sum_probs=212.9
Q ss_pred cccCCCCCeeEEEEcCC---CCeEEEEeCCCeEEEEEccC-CceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCC
Q 001248 415 LVKDPGVSVNRVIWSPD---GSLFGVAYSRHIVQIYSYHG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT 490 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spd---g~~las~~~dg~i~iwd~~~-~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~ 490 (1114)
.+.+|.+.|++++|+|+ |++|++|+.||.|+|||+.+ +..+. ..+.+|...|.+++|+|+++ +|++++.|+.
T Consensus 34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~ 109 (368)
T 3mmy_A 34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP--KAQQMHTGPVLDVCWSDDGS--KVFTASCDKT 109 (368)
T ss_dssp CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE--EEEEECSSCEEEEEECTTSS--EEEEEETTSE
T ss_pred eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE--EEeccccCCEEEEEECcCCC--EEEEEcCCCc
Confidence 57899999999999999 69999999999999999997 44332 25778999999999999999 7999999999
Q ss_pred EEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEe
Q 001248 491 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 570 (1114)
Q Consensus 491 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~ 570 (1114)
|++||+.+++.+. +.+|...|.+++|.+.+++.++++++.|+.|++||+++.+..
T Consensus 110 v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~------------------------ 164 (368)
T 3mmy_A 110 AKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPM------------------------ 164 (368)
T ss_dssp EEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCS------------------------
T ss_pred EEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEE------------------------
Confidence 9999999988765 556889999999866666677777777777777776653332
Q ss_pred eecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 571 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
..+..+. .+.++.+. +..+++++.++.+.+|++...
T Consensus 165 ---------------------------------------~~~~~~~---~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~ 200 (368)
T 3mmy_A 165 ---------------------------------------MVLQLPE---RCYCADVI--YPMAVVATAERGLIVYQLENQ 200 (368)
T ss_dssp ---------------------------------------EEEECSS---CEEEEEEE--TTEEEEEEGGGCEEEEECSSS
T ss_pred ---------------------------------------EEEecCC---CceEEEec--CCeeEEEeCCCcEEEEEeccc
Confidence 2222221 12222332 346667777778888877554
Q ss_pred ccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEE
Q 001248 651 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 730 (1114)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~ 730 (1114)
......+..
T Consensus 201 ~~~~~~~~~----------------------------------------------------------------------- 209 (368)
T 3mmy_A 201 PSEFRRIES----------------------------------------------------------------------- 209 (368)
T ss_dssp CEEEEECCC-----------------------------------------------------------------------
T ss_pred cchhhhccc-----------------------------------------------------------------------
Confidence 221111100
Q ss_pred eccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccc
Q 001248 731 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 810 (1114)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~ 810 (1114)
.....+..+.+.++...
T Consensus 210 ------------------~~~~~~~~~~~~~~~~~--------------------------------------------- 226 (368)
T 3mmy_A 210 ------------------PLKHQHRCVAIFKDKQN--------------------------------------------- 226 (368)
T ss_dssp ------------------SCSSCEEEEEEEECTTS---------------------------------------------
T ss_pred ------------------cccCCCceEEEcccCCC---------------------------------------------
Confidence 01111122222211110
Q ss_pred cCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCC---ccccccCCCCC------------CeEEEEEecCCCcE
Q 001248 811 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTF---KTMATFMPPPP------------AATFLAFHPQDNNI 874 (1114)
Q Consensus 811 ~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~---~~~~~~~~~~~------------~i~~l~~sp~d~~~ 874 (1114)
++ ..+++++ ||.|++|++... .....+..|.. .|++++|+| ++++
T Consensus 227 ----------------~~--~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~ 287 (368)
T 3mmy_A 227 ----------------KP--TGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHP-VHGT 287 (368)
T ss_dssp ----------------CE--EEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECT-TTCC
T ss_pred ----------------CC--CeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEec-CCCE
Confidence 00 1155665 777777777765 34445555554 799999999 8999
Q ss_pred EEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001248 875 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 933 (1114)
Q Consensus 875 la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~ 933 (1114)
|++|+.||.|++||+.+++++..+.+|...|++++|+|++++|++++.|+..+.|++-.
T Consensus 288 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 288 LATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp EEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred EEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccC
Confidence 99999999999999999999999999999999999999999999999998766665543
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=287.76 Aligned_cols=246 Identities=12% Similarity=0.143 Sum_probs=199.1
Q ss_pred CCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCc--cccccCCCCCCeEEEEEecC-CCcEEEEEeCCCcEEEEEccc
Q 001248 816 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK--TMATFMPPPPAATFLAFHPQ-DNNIIAIGMDDSSIQIYNVRV 891 (1114)
Q Consensus 816 ~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~--~~~~~~~~~~~i~~l~~sp~-d~~~la~g~~dg~v~iwd~~~ 891 (1114)
+|...|.+++|+|+|++|++++ |++|+|||+.++. .+..+.+|...|.+++|+++ ++++||+|+.|++|++||+.+
T Consensus 11 ~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~ 90 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN 90 (316)
T ss_dssp ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSS
T ss_pred cccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCC
Confidence 3999999999999999999999 9999999998764 46778999999999999862 488999999999999999998
Q ss_pred c--eEEEeecccccCeeEEEEcCC--CCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccC----
Q 001248 892 D--EVKSKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD---- 963 (1114)
Q Consensus 892 ~--~~~~~l~~h~~~V~~l~~s~d--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspd---- 963 (1114)
+ +.+..+.+|...|++++|+|+ +.+|++++.|++|++|++..... ........+|. ..+.+++|+|+
T Consensus 91 ~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~--~~~~~~~~~h~---~~v~~~~~~~~~~~~ 165 (316)
T 3bg1_A 91 GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ--WEVKKINNAHT---IGCNAVSWAPAVVPG 165 (316)
T ss_dssp SCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC--EEECCBTTSSS---SCBCCCEECCCCCC-
T ss_pred CcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC--cceeeeecccc---CCcceEEEccccCCc
Confidence 7 466778899999999999998 78999999999999999987432 11223344444 37889999998
Q ss_pred -------------CcEEEE-EeCCeEEEEEcCCCc---eeeeeecCCCCcCeeEEEECCCC----CEEEEEEcCCeEEEE
Q 001248 964 -------------QIHFLV-VHETQLAIFETTKLE---CVKQWVPRESSAPITHATFSCDS----QLVYACFLDATVCVF 1022 (1114)
Q Consensus 964 -------------g~~l~~-~~d~~i~iwd~~~~~---~~~~~~~~~h~~~v~~l~~s~dg----~~l~s~s~Dg~I~vw 1022 (1114)
+++|++ +.|+.|++||+.+.. ++..+ .+|...|.+++|+|++ .+|++++.||+|++|
T Consensus 166 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l--~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw 243 (316)
T 3bg1_A 166 SLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKL--EAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIW 243 (316)
T ss_dssp -----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECC--BCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEE
T ss_pred cccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeec--ccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEE
Confidence 467888 689999999997552 34443 4899999999999987 889999999999999
Q ss_pred EcCCCe---e-eEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccC
Q 001248 1023 SAANLK---L-RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1023 d~~~~~---~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~ 1079 (1114)
++.+.. . ...+. +| ...+. +++|+| ++++|++++.||+|++|+...
T Consensus 244 ~~~~~~~~~~~~~~~~-------~~-~~~v~--~v~~sp-~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 244 TCDDASSNTWSPKLLH-------KF-NDVVW--HVSWSI-TANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp ECSSTTCCCCBCCEEE-------EC-SSCEE--EEEECT-TTCCEEEEESSSCEEEEEECT
T ss_pred EccCccccchhhhhhh-------cC-CCcEE--EEEEcC-CCCEEEEEcCCCeEEEEEECC
Confidence 997631 1 11111 22 22255 899999 689999999999999999864
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.2e-30 Score=286.82 Aligned_cols=227 Identities=12% Similarity=0.131 Sum_probs=179.7
Q ss_pred ccccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCcee-eeeEeeccccCCeeEEEecC--CCCeeEEEEecCCCC
Q 001248 414 ALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSH--PNKQLCVITCGDDKT 490 (1114)
Q Consensus 414 ~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~--d~~~~~l~s~~~d~~ 490 (1114)
.++.+|.+.|++++|+|++++||+|+.||.|+|||+.++... .....+.+|...|.+++|+| |++ +|++++.|++
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~~dg~ 82 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASASYDKT 82 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEETTSC
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEcCCCe
Confidence 367899999999999999999999999999999999976422 33446789999999999999 577 7999999999
Q ss_pred EEEEeCCCC---------cceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEE
Q 001248 491 IKVWDATNG---------AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAY 561 (1114)
Q Consensus 491 i~iwd~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~ 561 (1114)
|++||+.++ +.+..+.+|...|.+++|++..++.++++++.|+.|++||+++......+... ..+..+.+
T Consensus 83 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~ 161 (351)
T 3f3f_A 83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLT-SEMKVLSI 161 (351)
T ss_dssp EEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEE-EEEESCSC
T ss_pred EEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccc-cccccccc
Confidence 999999887 55778889999999999987643689999999999999999887654432210 00111111
Q ss_pred ecCCCeEEeeecccceeEEEecCC---CCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCC----CEEE
Q 001248 562 SADGTRTYQGFRKRSLGVVQFDTT---KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG----CLLA 634 (1114)
Q Consensus 562 s~~g~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~----~~l~ 634 (1114)
.+ ..+...+.++.|+|+ +..+++++.++.+.+|+...++.........+...|.+++|+|++ ++|+
T Consensus 162 ~~-------~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~ 234 (351)
T 3f3f_A 162 PP-------ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIA 234 (351)
T ss_dssp CC-------SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEE
T ss_pred cc-------CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEE
Confidence 11 112335667777776 789999999999999988887763333333445689999999998 8999
Q ss_pred EEeCCCcEEEEEccCC
Q 001248 635 VSTNDNGIKILATSDG 650 (1114)
Q Consensus 635 ~~~~dg~i~iwd~~~~ 650 (1114)
+++.||.|++||+.++
T Consensus 235 s~~~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 235 TGCKDGRIRIFKITEK 250 (351)
T ss_dssp EEETTSCEEEEEEEEC
T ss_pred EEcCCCeEEEEeCCCC
Confidence 9999999999998765
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-29 Score=291.58 Aligned_cols=233 Identities=20% Similarity=0.340 Sum_probs=204.4
Q ss_pred cCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeE
Q 001248 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 435 (1114)
Q Consensus 356 ~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 435 (1114)
.|...|+|++| ++++ +++|+.||.|++||+.+++... .+.+|.+.|.+++| ++++|
T Consensus 131 ~~~~~v~~~~~--d~~~-l~~g~~dg~i~iwd~~~~~~~~-------------------~~~~h~~~v~~l~~--~~~~l 186 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQK-IVSGLRDNTIKIWDKNTLECKR-------------------ILTGHTGSVLCLQY--DERVI 186 (435)
T ss_dssp SSCCCEEEEEC--CSSE-EEEEESSSCEEEEESSSCCEEE-------------------EECCCSSCEEEEEC--CSSEE
T ss_pred CCCCcEEEEEE--CCCE-EEEEeCCCeEEEEeCCCCeEEE-------------------EEcCCCCcEEEEEE--CCCEE
Confidence 47788999888 7885 9999999999999999988765 47889999999999 89999
Q ss_pred EEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcce---eEeeccccCE
Q 001248 436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ---YIFEGHEAPV 512 (1114)
Q Consensus 436 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~h~~~v 512 (1114)
++|+.||+|++||+.+++.+. .+.+|...|.+++|++ . ++++|+.|++|++||+.++..+ ..+.+|...|
T Consensus 187 ~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 259 (435)
T 1p22_A 187 ITGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 259 (435)
T ss_dssp EEEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred EEEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcE
Confidence 999999999999999998765 6889999999999974 4 6999999999999999988776 6778999999
Q ss_pred EEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEE
Q 001248 513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 592 (1114)
Q Consensus 513 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~ 592 (1114)
.+++| ++.++++++.||.|++||+++......+..+...+.++.+. +++++++
T Consensus 260 ~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-----------------------~~~l~~g 312 (435)
T 1p22_A 260 NVVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR-----------------------DRLVVSG 312 (435)
T ss_dssp EEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE-----------------------TTEEEEE
T ss_pred EEEEe----CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC-----------------------CCEEEEE
Confidence 99997 34799999999999999999988887777777777666652 2369999
Q ss_pred eCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 593 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 593 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
+.||.|++||+.+++.+..+..|. ..|.+++| ++.+|++|+.||.|++||+.++
T Consensus 313 ~~dg~i~iwd~~~~~~~~~~~~h~--~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 313 SSDNTIRLWDIECGACLRVLEGHE--ELVRCIRF--DNKRIVSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCS--SCEEEEEC--CSSEEEEEETTSCEEEEEHHHH
T ss_pred eCCCeEEEEECCCCCEEEEEeCCc--CcEEEEEe--cCCEEEEEeCCCcEEEEECCCC
Confidence 999999999999999999998664 47888888 7899999999999999998765
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=284.33 Aligned_cols=294 Identities=13% Similarity=0.107 Sum_probs=229.9
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw 494 (1114)
+..+|.+.|.+++|+|++++|++++.|+.|+|||+.+++.......+.+|...|.+++|+|+++. ++++|+.|+.|++|
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKV 84 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEE
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEE
Confidence 35689999999999999999999999999999999988732223356689999999999999882 37899999999999
Q ss_pred eC-CCCcceeEeec--cccCEEEEeeccCCCceEEEEEecCCeEEEEEcCC---------CCCeeeecCCCCeeEEEEEe
Q 001248 495 DA-TNGAKQYIFEG--HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN---------LGSRVDYEAPGRWCTTMAYS 562 (1114)
Q Consensus 495 d~-~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~---------~~~~~~~~~~~~~v~~~~~s 562 (1114)
|+ .+++ ...+.+ |...|.+++|++ +.++++++.|+.|++||+++ ......+. +...+.++
T Consensus 85 d~~~~~~-~~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~--- 156 (342)
T 1yfq_A 85 DLIGSPS-FQALTNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTM--- 156 (342)
T ss_dssp CSSSSSS-EEECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEE---
T ss_pred EeccCCc-eEeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEE---
Confidence 99 7765 478888 999999999977 47999999999999999986 44333333 44444444
Q ss_pred cCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCC-cceEEEeccCCCCCCcCeEEEcC-CCCEEEEEeCCC
Q 001248 563 ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDN 640 (1114)
Q Consensus 563 ~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~dg 640 (1114)
+|++++ +++++.++.|++||+.+ +..........+...+.+++|+| +++++++++.||
T Consensus 157 ------------------~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg 216 (342)
T 1yfq_A 157 ------------------DTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDG 216 (342)
T ss_dssp ------------------EECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTS
T ss_pred ------------------EecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCC
Confidence 444444 88999999999999988 55332222223345789999999 999999999999
Q ss_pred cEEEEEccCC-----ccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCc
Q 001248 641 GIKILATSDG-----IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVK 715 (1114)
Q Consensus 641 ~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1114)
.|++|++... ......+..|..
T Consensus 217 ~i~i~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------------- 243 (342)
T 1yfq_A 217 RVAVEFFDDQGDDYNSSKRFAFRCHRL----------------------------------------------------- 243 (342)
T ss_dssp EEEEEECCTTCCSTTCTTCEEEECCCC-----------------------------------------------------
T ss_pred cEEEEEEcCCCcccccccceeeecccc-----------------------------------------------------
Confidence 9999998654 111111110000
Q ss_pred ccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccc
Q 001248 716 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASV 795 (1114)
Q Consensus 716 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 795 (1114)
.
T Consensus 244 -------------------------------------~------------------------------------------ 244 (342)
T 1yfq_A 244 -------------------------------------N------------------------------------------ 244 (342)
T ss_dssp -------------------------------------C------------------------------------------
T ss_pred -------------------------------------c------------------------------------------
Confidence 0
Q ss_pred cccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCC-CCCeEEEEEecCCCc
Q 001248 796 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP-PPAATFLAFHPQDNN 873 (1114)
Q Consensus 796 ~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~sp~d~~ 873 (1114)
..+..|...|.+++|+|++++|++++ ||.|++||+.+++.+..+.+| ...|.+++ | +++
T Consensus 245 ----------------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~-~~~ 305 (342)
T 1yfq_A 245 ----------------LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--C-SDN 305 (342)
T ss_dssp ----------------TTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--E-CSS
T ss_pred ----------------ccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--C-CCC
Confidence 00012677899999999999999998 899999999999999999998 99999999 7 899
Q ss_pred EEEEEeCCCc-EEEEE
Q 001248 874 IIAIGMDDSS-IQIYN 888 (1114)
Q Consensus 874 ~la~g~~dg~-v~iwd 888 (1114)
+|++|+.||. .+.|.
T Consensus 306 ~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 306 ILCLATSDDTFKTNAA 321 (342)
T ss_dssp EEEEEEECTHHHHCSS
T ss_pred eEEEEecCCccccccc
Confidence 9999999998 44444
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-29 Score=276.98 Aligned_cols=282 Identities=17% Similarity=0.285 Sum_probs=229.4
Q ss_pred eEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEE
Q 001248 754 ISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYV 833 (1114)
Q Consensus 754 i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l 833 (1114)
...++||+++ +++++.|++|+|||+. +|+++.. +...+|...|.+++|+|++++|
T Consensus 28 ~~~l~WS~~~--~lAvg~D~tV~iWd~~----------------------tg~~~~~-~~~~~~~~~V~~v~~~~~~~~l 82 (318)
T 4ggc_A 28 LNLVDWSSGN--VLAVALDNSVYLWSAS----------------------SGDILQL-LQMEQPGEYISSVAWIKEGNYL 82 (318)
T ss_dssp CBCEEECTTS--EEEEEETTEEEEEETT----------------------TCCEEEE-EECCSTTCCEEEEEECTTSSEE
T ss_pred ceEEEECCCC--EEEEEeCCEEEEEECC----------------------CCCEEEE-EEecCCCCeEEEEEECCCCCEE
Confidence 4568999886 4445569999998765 4443322 2223488899999999999999
Q ss_pred EEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc-eEEEeecccccCeeEEEEc
Q 001248 834 MSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKGHSKRITGLAFS 911 (1114)
Q Consensus 834 ~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~-~~~~~l~~h~~~V~~l~~s 911 (1114)
++|+ ||+|++||+.+++.+..+.+|...+.++.+. +.++++|+.++.+++|+..+. ..+..+.+|...+..++|+
T Consensus 83 ~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (318)
T 4ggc_A 83 AVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 159 (318)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred EEEECCCcEEEeecCCceeEEEecCccceEEEeecC---CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEc
Confidence 9999 9999999999999999999999888876664 579999999999999999875 5667889999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE----EeCCeEEEEEcCCCceee
Q 001248 912 HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV----VHETQLAIFETTKLECVK 987 (1114)
Q Consensus 912 ~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~----~~d~~i~iwd~~~~~~~~ 987 (1114)
+++++|++++.|++|++||+.+++....... ....+ ...|..++++|++..++. +.++.|++||........
T Consensus 160 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~ 235 (318)
T 4ggc_A 160 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ-TFTQH---QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS 235 (318)
T ss_dssp TTSSEEEEEETTSCEEEEESSCBTTBSCCSE-EECCC---CSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEE
T ss_pred CCCCEEEEEecCcceeEEECCCCccccccee-eeccc---CCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccc
Confidence 9999999999999999999998654332222 12222 247899999998765443 257899999999888776
Q ss_pred eeecCCCCcCeeEEEECCCCCEEEEEE--cCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEE
Q 001248 988 QWVPRESSAPITHATFSCDSQLVYACF--LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1065 (1114)
Q Consensus 988 ~~~~~~h~~~v~~l~~s~dg~~l~s~s--~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s 1065 (1114)
.. .|...+..++|+|++..+++++ .|+.|+|||+.+++.+..+. +|... |. +++|+| |+++|+|
T Consensus 236 ~~---~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~-------gH~~~-V~--~l~~sp-dg~~l~S 301 (318)
T 4ggc_A 236 AV---DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-------GHTSR-VL--SLTMSP-DGATVAS 301 (318)
T ss_dssp EE---ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-------CCSSC-EE--EEEECT-TSSCEEE
T ss_pred cc---cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc-------CCCCC-EE--EEEEcC-CCCEEEE
Confidence 65 3577899999999999988765 79999999999999999887 54443 55 899999 6899999
Q ss_pred EeCCCcEEEEeccCCC
Q 001248 1066 GLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1066 ~~~Dg~v~vW~i~~~~ 1081 (1114)
|+.||+|++||+.+.+
T Consensus 302 ~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 302 AAADETLRLWRCFELD 317 (318)
T ss_dssp EETTTEEEEECCSCCC
T ss_pred EecCCeEEEEECCCCC
Confidence 9999999999998765
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=283.87 Aligned_cols=245 Identities=9% Similarity=0.008 Sum_probs=203.1
Q ss_pred cCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCC-e
Q 001248 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS-L 434 (1114)
Q Consensus 356 ~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-~ 434 (1114)
.|.+.|++++|+|+|++ |++|+.||.|+|||+.+++..... ..+.+|...|.+++|+|+++ +
T Consensus 9 ~h~~~v~~~~~s~~~~~-l~~~~~d~~v~iw~~~~~~~~~~~----------------~~~~~~~~~v~~~~~~~~~~~~ 71 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSL-LLITSWDGSLTVYKFDIQAKNVDL----------------LQSLRYKHPLLCCNFIDNTDLQ 71 (342)
T ss_dssp CCSSCEEEEEEEGGGTE-EEEEETTSEEEEEEEETTTTEEEE----------------EEEEECSSCEEEEEEEESSSEE
T ss_pred CCCCcEEEEEEcCCCCE-EEEEcCCCeEEEEEeCCCCccccc----------------eeeeecCCceEEEEECCCCCcE
Confidence 49999999999999995 899999999999999887621100 02457899999999999999 9
Q ss_pred EEEEeCCCeEEEEEc-cCCceeeeeEeecc--ccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCC---------Ccce
Q 001248 435 FGVAYSRHIVQIYSY-HGGDEVRQHLEIDA--HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN---------GAKQ 502 (1114)
Q Consensus 435 las~~~dg~i~iwd~-~~~~~~~~~~~l~~--h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~---------~~~~ 502 (1114)
|++|+.||.|++||+ .+++. ..+.+ |...|.+++|+| ++ ++++++.|+.|++||+.+ ++++
T Consensus 72 l~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 144 (342)
T 1yfq_A 72 IYVGTVQGEILKVDLIGSPSF----QALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVKNLNS 144 (342)
T ss_dssp EEEEETTSCEEEECSSSSSSE----EECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEEESCS
T ss_pred EEEEcCCCeEEEEEeccCCce----EeccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEcccccccccccccCCee
Confidence 999999999999999 88754 25778 999999999999 77 799999999999999998 8877
Q ss_pred eEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCC-CCCe--eeecCCCCeeEEEEEecCCCeEEeeecccceeE
Q 001248 503 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSR--VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 579 (1114)
Q Consensus 503 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~--~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~ 579 (1114)
..+. |...|.+++|++ + .+++++.|+.|++||++. .... .....+... +.+
T Consensus 145 ~~~~-~~~~v~~~~~~~--~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~---------------------i~~ 198 (342)
T 1yfq_A 145 NNTK-VKNKIFTMDTNS--S--RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQ---------------------IRD 198 (342)
T ss_dssp SSSS-SCCCEEEEEECS--S--EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSC---------------------EEE
T ss_pred eEEe-eCCceEEEEecC--C--cEEEEeCCCeEEEEECCccccccceeeecCCCCc---------------------eeE
Confidence 7777 899999999864 3 299999999999999987 4432 122233333 445
Q ss_pred EEecC-CCCEEEEEeCCCeEEEEECCCc------ceEEEeccCCC-------CCCcCeEEEcCCCCEEEEEeCCCcEEEE
Q 001248 580 VQFDT-TKNRFLAAGDDFSIKFWDMDSV------QLLTSIDADGG-------LPASPRIRFNKDGCLLAVSTNDNGIKIL 645 (1114)
Q Consensus 580 ~~~~~-~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~-------~~~v~~~~~s~d~~~l~~~~~dg~i~iw 645 (1114)
++|+| +++++++++.||.|++|++... +....+..+.. ...|.+++|+|++++|++++.||.|++|
T Consensus 199 i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw 278 (342)
T 1yfq_A 199 VALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW 278 (342)
T ss_dssp EEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred EEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEE
Confidence 55555 5568999999999999999887 77777776632 3479999999999999999999999999
Q ss_pred EccCC
Q 001248 646 ATSDG 650 (1114)
Q Consensus 646 d~~~~ 650 (1114)
|+.++
T Consensus 279 d~~~~ 283 (342)
T 1yfq_A 279 NLQTR 283 (342)
T ss_dssp ETTTT
T ss_pred cCccH
Confidence 99877
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-29 Score=291.90 Aligned_cols=195 Identities=15% Similarity=0.291 Sum_probs=166.8
Q ss_pred ccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEe
Q 001248 416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495 (1114)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd 495 (1114)
..+|...|.+++| |+++|++|+.||.|++||+.+++... .+.+|.+.|.+++| +++ ++++|+.||+|++||
T Consensus 129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~--~~~--~l~sg~~dg~i~vwd 199 (435)
T 1p22_A 129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWD 199 (435)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEE
T ss_pred ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE---EEcCCCCcEEEEEE--CCC--EEEEEcCCCeEEEEE
Confidence 3457778998887 89999999999999999999988665 68899999999999 677 799999999999999
Q ss_pred CCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCe---eeecCCCCeeEEEEEecCCCeEEeee
Q 001248 496 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR---VDYEAPGRWCTTMAYSADGTRTYQGF 572 (1114)
Q Consensus 496 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~---~~~~~~~~~v~~~~~s~~g~~~~~~~ 572 (1114)
+.+++.+.++.+|...|.+++|+ + .++++++.||.|++||+.+.... ..+..|...|.++.+
T Consensus 200 ~~~~~~~~~~~~h~~~v~~l~~~--~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~----------- 264 (435)
T 1p22_A 200 VNTGEMLNTLIHHCEAVLHLRFN--N--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF----------- 264 (435)
T ss_dssp SSSCCEEEEECCCCSCEEEEECC--T--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-----------
T ss_pred CCCCcEEEEEcCCCCcEEEEEEc--C--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe-----------
Confidence 99999999999999999999974 2 58999999999999999886654 344455555555554
Q ss_pred cccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 573 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 573 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
+++++++++.||.|++||+.+++.+..+..+. ..+.++.+ ++.++++|+.||.|++||+.++
T Consensus 265 ------------~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~ 326 (435)
T 1p22_A 265 ------------DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK--RGIACLQY--RDRLVVSGSSDNTIRLWDIECG 326 (435)
T ss_dssp ------------ETTEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEE--ETTEEEEEETTSCEEEEETTTC
T ss_pred ------------CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCC--CcEEEEEe--CCCEEEEEeCCCeEEEEECCCC
Confidence 34579999999999999999999999988664 46888888 5789999999999999998776
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-29 Score=294.58 Aligned_cols=306 Identities=13% Similarity=0.139 Sum_probs=224.3
Q ss_pred cccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCcc-ccccCCCCCCC----------
Q 001248 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIM-MTNDVTDSNPE---------- 818 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~-~~~~~~~~~~~---------- 818 (1114)
+...|.+++|+|+|++|++++.||.|+||++.......... .+.. ....+. +|.
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~-------------~~~~~~~~~~~--~h~~~~~~~~~~~ 91 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHS-------------RGEYNVYSTFQ--SHEPEFDYLKSLE 91 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCC-------------CCCEEEEEEEE--CCCCEEEGGGTEE
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCccc-------------ccceeEecccc--ccccccccccccc
Confidence 67899999999999999999999999999987543110000 0000 011122 265
Q ss_pred --CCccEEEEeeCC--CEEEEEe-CCeEEEEEcCCCccc---------------------------------------cc
Q 001248 819 --EAVPCFALSKND--SYVMSAS-GGKISLFNMMTFKTM---------------------------------------AT 854 (1114)
Q Consensus 819 --~~v~~v~~s~d~--~~l~~~~-dg~i~iwd~~~~~~~---------------------------------------~~ 854 (1114)
..|.+++|+|++ .+|++++ |++|++||+.++... ..
T Consensus 92 ~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (447)
T 3dw8_B 92 IEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRI 171 (447)
T ss_dssp ECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEE
T ss_pred ccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEE
Confidence 889999999998 7888888 999999999764431 12
Q ss_pred -cCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc-ceEEE-------eecccccCeeEEEEcCCC-CEEEEEeCCC
Q 001248 855 -FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKS-------KLKGHSKRITGLAFSHAL-NVLVSSGADS 924 (1114)
Q Consensus 855 -~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~-~~~~~-------~l~~h~~~V~~l~~s~d~-~~l~s~s~D~ 924 (1114)
..+|...|.+++|+| ++++|++| .||.|++||+.+ ++.+. .+.+|...|++++|+|++ ++|++++.|+
T Consensus 172 ~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg 249 (447)
T 3dw8_B 172 FANAHTYHINSISINS-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKG 249 (447)
T ss_dssp ECSCCSSCCCEEEECT-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTS
T ss_pred eccCCCcceEEEEEcC-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCC
Confidence 367999999999999 89999999 799999999994 44444 367899999999999998 9999999999
Q ss_pred cEEEEeCCCCccccccccccCCCCCC---------CCCCceEEEEccCCcEEEEEeCCeEEEEEcCC-CceeeeeecCCC
Q 001248 925 QLCVWSSDGWEKQKNRFLQIPTGRTP---------TAQSDTRVQFHQDQIHFLVVHETQLAIFETTK-LECVKQWVPRES 994 (1114)
Q Consensus 925 ~v~iwd~~~~~~~~~~~~~~~~~~~~---------~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~-~~~~~~~~~~~h 994 (1114)
+|++||+.+++.... ......++.. ....|.+++|+|+|++|+++.++.|++||+.+ ++.+..+. +|
T Consensus 250 ~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~--~~ 326 (447)
T 3dw8_B 250 TIRLCDMRASALCDR-HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQ--VH 326 (447)
T ss_dssp CEEEEETTTCSSSCT-TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEE--SC
T ss_pred eEEEEECcCCccccc-eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceee--cc
Confidence 999999998653211 1222333321 00268999999999999997669999999997 88877776 44
Q ss_pred CcC---------------eeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCc------ccCC------C-----
Q 001248 995 SAP---------------ITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSA------YLPA------G----- 1042 (1114)
Q Consensus 995 ~~~---------------v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~------~~~~------~----- 1042 (1114)
... +..++|+|++++|++++.||.|++||+.+++.+....... .... +
T Consensus 327 ~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (447)
T 3dw8_B 327 EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKD 406 (447)
T ss_dssp GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTT
T ss_pred ccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccc
Confidence 321 3459999999999999999999999999998764221100 0000 0
Q ss_pred -----CCCCCccceEEEecCCCCCeEEEEeCCCcEEEEec
Q 001248 1043 -----VSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1077 (1114)
Q Consensus 1043 -----~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i 1077 (1114)
.....-..+.++|+| ++++|++++.++ +++|.-
T Consensus 407 ~~~~~~~~~~~~i~~~~~~p-~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 407 EISVDSLDFNKKILHTAWHP-KENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp CEEGGGCCTTSCCCEEEECS-SSSEEEEECSSC-EEEEEC
T ss_pred cccccccccCCceeEEEECC-CCCEEEEEecce-eeeecc
Confidence 000011234899999 689999888765 777763
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-29 Score=286.59 Aligned_cols=255 Identities=16% Similarity=0.206 Sum_probs=208.0
Q ss_pred ccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCc--ceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCC-
Q 001248 355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR--ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD- 431 (1114)
Q Consensus 355 ~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd- 431 (1114)
-+|.+.|++++|+|+|++ |++|+.||.|+|||+..+ +.+. .+.+|.+.|.+++|+|+
T Consensus 8 ~~h~~~v~~~~~s~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~ 67 (379)
T 3jrp_A 8 NAHNELIHDAVLDYYGKR-LATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHPK 67 (379)
T ss_dssp EECCCCEEEEEECSSSSE-EEEEETTSCEEEEEEETTEEEEEE-------------------EECCCSSCEEEEEECCGG
T ss_pred cCCcccEEEEEEcCCCCE-EEEEECCCcEEEEecCCCcceeee-------------------EecCCCCcEEEEEeCCCC
Confidence 349999999999999995 999999999999999843 3332 37789999999999987
Q ss_pred -CCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCC--CCeeEEEEecCCCCEEEEeCCCCc--ceeEee
Q 001248 432 -GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNGA--KQYIFE 506 (1114)
Q Consensus 432 -g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~ 506 (1114)
+++|++|+.||.|++||+.+++.. ....+.+|...|.+++|+|+ +. ++++++.|+.|++||+.++. ....+.
T Consensus 68 ~~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 144 (379)
T 3jrp_A 68 FGTILASCSYDGKVLIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIIID 144 (379)
T ss_dssp GCSEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCCCEEEEE
T ss_pred CCCEEEEeccCCEEEEEEcCCCcee-EeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCceeeEEec
Confidence 999999999999999999998622 33367789999999999999 78 79999999999999999874 345677
Q ss_pred ccccCEEEEeeccCC-----------CceEEEEEecCCeEEEEEcCCCCCe----eeecCCCCeeEEEEEecCCCeEEee
Q 001248 507 GHEAPVYSVCPHHKE-----------NIQFIFSTALDGKIKAWLYDNLGSR----VDYEAPGRWCTTMAYSADGTRTYQG 571 (1114)
Q Consensus 507 ~h~~~v~~~~~~~~~-----------~~~~l~s~~~d~~i~~wd~~~~~~~----~~~~~~~~~v~~~~~s~~g~~~~~~ 571 (1114)
+|...|.+++|++.. ++.++++++.|+.|++||+++.... ..+..|...|.+++|+|++.
T Consensus 145 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~----- 219 (379)
T 3jrp_A 145 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL----- 219 (379)
T ss_dssp CCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS-----
T ss_pred CCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCC-----
Confidence 899999999998742 5689999999999999999876543 23444555555555555510
Q ss_pred ecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcc---eEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEcc
Q 001248 572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ---LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 648 (1114)
Q Consensus 572 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~ 648 (1114)
.++++++++.||.|++||+.++. ....+....+...+.+++|+|++++|++++.||.|++|++.
T Consensus 220 -------------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 220 -------------LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp -------------SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred -------------CCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 04579999999999999998865 33344443455679999999999999999999999999998
Q ss_pred CC
Q 001248 649 DG 650 (1114)
Q Consensus 649 ~~ 650 (1114)
.+
T Consensus 287 ~~ 288 (379)
T 3jrp_A 287 LE 288 (379)
T ss_dssp ET
T ss_pred CC
Confidence 65
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=290.88 Aligned_cols=253 Identities=15% Similarity=0.229 Sum_probs=201.2
Q ss_pred CCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC-CCCeEEE
Q 001248 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFGV 437 (1114)
Q Consensus 359 ~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las 437 (1114)
....+++++|+...++++|+.||.|+||++....... .....+.+|.+.|.+++|+| ++++|++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~---------------~~~~~~~~h~~~V~~~~~~p~~~~~l~s 99 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVD---------------KNVPLVCGHTAPVLDIAWCPHNDNVIAS 99 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECC---------------TTCCCBCCCSSCEEEEEECTTCTTEEEE
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCC---------------CCCceEecCCCCEEEEEeCCCCCCEEEE
Confidence 3456799999988767778999999999996543221 01124789999999999999 9999999
Q ss_pred EeCCCeEEEEEccCCcee----eeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEe--eccccC
Q 001248 438 AYSRHIVQIYSYHGGDEV----RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF--EGHEAP 511 (1114)
Q Consensus 438 ~~~dg~i~iwd~~~~~~~----~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~h~~~ 511 (1114)
|+.||+|+|||+.++... .....+.+|...|.+++|+|+++. +|++++.|++|++||+.+++.+..+ .+|...
T Consensus 100 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 178 (402)
T 2aq5_A 100 GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDT 178 (402)
T ss_dssp EETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSC
T ss_pred EeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCc
Confidence 999999999999987321 223368899999999999999843 7999999999999999999999999 889999
Q ss_pred EEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeee-cCCCCe-eEEEEEecCCCeEEeeecccceeEEEecCCCCEE
Q 001248 512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-EAPGRW-CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 589 (1114)
Q Consensus 512 v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~-v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l 589 (1114)
|.+++|++ ++.+|++++.|+.|++||+++......+ ..+... +..+. |+|++.++
T Consensus 179 v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~l 235 (402)
T 2aq5_A 179 IYSVDWSR--DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAV---------------------FVSEGKIL 235 (402)
T ss_dssp EEEEEECT--TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEE---------------------ECSTTEEE
T ss_pred eEEEEECC--CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEE---------------------EcCCCcEE
Confidence 99999876 5579999999999999999986665555 344332 44444 44555578
Q ss_pred EEE---eCCCeEEEEECCCcce-EEEeccCCCCCCcCeEEEcCCCCEEEE-EeCCCcEEEEEccCCc
Q 001248 590 LAA---GDDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNKDGCLLAV-STNDNGIKILATSDGI 651 (1114)
Q Consensus 590 ~~~---~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~~dg~i~iwd~~~~~ 651 (1114)
+++ +.|+.|++||+.+++. +..... .+...+.+++|+|++++|++ ++.||.|++|++.++.
T Consensus 236 ~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 236 TTGFSRMSERQVALWDTKHLEEPLSLQEL-DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA 301 (402)
T ss_dssp EEEECTTCCEEEEEEETTBCSSCSEEEEC-CCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred EEeccCCCCceEEEEcCccccCCceEEec-cCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence 888 6899999999988764 333322 22346899999999999975 5579999999998874
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-29 Score=283.89 Aligned_cols=256 Identities=17% Similarity=0.202 Sum_probs=201.4
Q ss_pred CcceeEecc-CCCCceEEEEcCC---CCeEEEEEecCCcEEEEEcCC-cceeEEeeeeeeccCCCCcccccccccCCCCC
Q 001248 348 PKTVTRTLN-QGSSPMSMDFHPV---QQTLLLVGTNVGDIGLWEVGS-RERLVLRNFKVWDLGACSMPLQAALVKDPGVS 422 (1114)
Q Consensus 348 ~~~~~~~~~-h~~~v~~v~~spd---g~~ll~tg~~dg~v~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~ 422 (1114)
+......+. |.+.|++++|+|+ |+ +|++|+.||.|+|||+.+ +..+.. .+.+|...
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~------------------~~~~h~~~ 88 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIPK------------------AQQMHTGP 88 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEEE------------------EEEECSSC
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeEE------------------EeccccCC
Confidence 444445554 9999999999999 57 599999999999999997 444321 36789999
Q ss_pred eeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEe--cCCCCeeEEEEecCCCCEEEEeCCCCc
Q 001248 423 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF--SHPNKQLCVITCGDDKTIKVWDATNGA 500 (1114)
Q Consensus 423 V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~--s~d~~~~~l~s~~~d~~i~iwd~~~~~ 500 (1114)
|.+++|+|++++|++++.||.|++||+.+++.+. +.+|...|.+++| ++++. ++++++.|+.|++||+.+++
T Consensus 89 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~ 162 (368)
T 3mmy_A 89 VLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ----IAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTRSSN 162 (368)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSSCSS
T ss_pred EEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee----eccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECCCCc
Confidence 9999999999999999999999999999987554 5679999999999 88888 79999999999999999999
Q ss_pred ceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecC--CCCeeEEEEEecCCCeEEeeeccccee
Q 001248 501 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA--PGRWCTTMAYSADGTRTYQGFRKRSLG 578 (1114)
Q Consensus 501 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--~~~~v~~~~~s~~g~~~~~~~~~~~v~ 578 (1114)
.+..+..|. .+.++.+. . ..+++++.++.+++|+++.......... ....+..+.+.++...
T Consensus 163 ~~~~~~~~~-~~~~~~~~--~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 226 (368)
T 3mmy_A 163 PMMVLQLPE-RCYCADVI--Y--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQN----------- 226 (368)
T ss_dssp CSEEEECSS-CEEEEEEE--T--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTS-----------
T ss_pred EEEEEecCC-CceEEEec--C--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCC-----------
Confidence 999998664 56666653 2 4788999999999999987544332211 1223333333332220
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEECCCc---ceEEEeccCCCC----------CCcCeEEEcCCCCEEEEEeCCCcEEEE
Q 001248 579 VVQFDTTKNRFLAAGDDFSIKFWDMDSV---QLLTSIDADGGL----------PASPRIRFNKDGCLLAVSTNDNGIKIL 645 (1114)
Q Consensus 579 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~----------~~v~~~~~s~d~~~l~~~~~dg~i~iw 645 (1114)
....+++++.||.|++|++... ..+..+..+... ..|.+++|+|++++|++++.||.|++|
T Consensus 227 ------~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iw 300 (368)
T 3mmy_A 227 ------KPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW 300 (368)
T ss_dssp ------CEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred ------CCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEE
Confidence 0012999999999999999887 556666655321 158999999999999999999999999
Q ss_pred EccCC
Q 001248 646 ATSDG 650 (1114)
Q Consensus 646 d~~~~ 650 (1114)
|+.++
T Consensus 301 d~~~~ 305 (368)
T 3mmy_A 301 DKDAR 305 (368)
T ss_dssp ETTTT
T ss_pred ECCCC
Confidence 99876
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-29 Score=279.89 Aligned_cols=260 Identities=10% Similarity=0.130 Sum_probs=209.5
Q ss_pred eccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC--C
Q 001248 354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--D 431 (1114)
Q Consensus 354 ~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp--d 431 (1114)
..+|.+.|++++|+|+|++ |++|+.||.|+|||+.++...... ...+.+|...|.+++|+| |
T Consensus 7 ~~gH~~~v~~~~~~~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~---------------~~~~~~~~~~v~~~~~~~~~d 70 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFYGRH-VATCSSDQHIKVFKLDKDTSNWEL---------------SDSWRAHDSSIVAIDWASPEY 70 (351)
T ss_dssp ECCCSSCEEEEEECSSSSE-EEEEETTSEEEEEEECSSSCCEEE---------------EEEEECCSSCEEEEEECCGGG
T ss_pred CcccccceeEEEEcCCCCE-EEEeeCCCeEEEEECCCCCCccee---------------cceeccCCCcEEEEEEcCCCC
Confidence 3469999999999999995 999999999999999876432110 013678999999999999 6
Q ss_pred CCeEEEEeCCCeEEEEEccCCce------eeeeEeeccccCCeeEEEecCC--CCeeEEEEecCCCCEEEEeCCCCccee
Q 001248 432 GSLFGVAYSRHIVQIYSYHGGDE------VRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNGAKQY 503 (1114)
Q Consensus 432 g~~las~~~dg~i~iwd~~~~~~------~~~~~~l~~h~~~V~~v~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~~~~ 503 (1114)
+++|++|+.||.|++||+.+++. ......+.+|...|.+++|+|+ +. ++++++.|+.|++||+.+++.+.
T Consensus 71 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~ 148 (351)
T 3f3f_A 71 GRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPSDLR 148 (351)
T ss_dssp CSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTTCTT
T ss_pred CCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChHHhc
Confidence 99999999999999999988632 1334468899999999999999 88 79999999999999999888765
Q ss_pred Eee-------------ccccCEEEEeeccC-CCceEEEEEecCCeEEEEEcCCCCC--eeeecCCCCeeEEEEEecCCCe
Q 001248 504 IFE-------------GHEAPVYSVCPHHK-ENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTR 567 (1114)
Q Consensus 504 ~~~-------------~h~~~v~~~~~~~~-~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~g~~ 567 (1114)
.+. +|...+.+++|++. .++.++++++.|+.+.+|+...... ...+..|...|.+++|+|++..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~ 228 (351)
T 3f3f_A 149 SWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGR 228 (351)
T ss_dssp CCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSC
T ss_pred cccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCC
Confidence 543 68889999998775 1357999999999998887776544 3345556666666666666510
Q ss_pred EEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCc-----------------------------------------
Q 001248 568 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV----------------------------------------- 606 (1114)
Q Consensus 568 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------------------------------------- 606 (1114)
.+++|++++.||.|++||+.++
T Consensus 229 -----------------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (351)
T 3f3f_A 229 -----------------WYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQ 291 (351)
T ss_dssp -----------------SSEEEEEEETTSCEEEEEEEECC---------------------------------------C
T ss_pred -----------------cceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeec
Confidence 0047999999999999998764
Q ss_pred -----ceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 607 -----QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 607 -----~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
+.+..+..| ...|.+++|+|++++|++++.||.|++|++.++
T Consensus 292 ~~~~~~~~~~~~~h--~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 292 SNLQVELLSEHDDH--NGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp CSEEEEEEEEECTT--SSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred ccccccEEEEEecc--cccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence 455555544 457999999999999999999999999999887
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-29 Score=287.27 Aligned_cols=287 Identities=15% Similarity=0.138 Sum_probs=226.8
Q ss_pred EEEEEccCcceeee-cccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEee-CCCE
Q 001248 755 SRLIFTNSGNAILA-LASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSY 832 (1114)
Q Consensus 755 ~~l~~s~~~~~l~~-~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~-d~~~ 832 (1114)
..++++|+...+++ ++.+|.|+||++....... ... ..+. +|...|.+++|+| ++++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~------------------~~~-~~~~--~h~~~V~~~~~~p~~~~~ 96 (402)
T 2aq5_A 38 GFCAVNPKFMALICEASGGGAFLVLPLGKTGRVD------------------KNV-PLVC--GHTAPVLDIAWCPHNDNV 96 (402)
T ss_dssp CSEEECSSEEEEEBCCSSSCCEEEEETTCCEECC------------------TTC-CCBC--CCSSCEEEEEECTTCTTE
T ss_pred CcEEECCCeEEEEEEEcCCCEEEEEECccCCCCC------------------CCC-ceEe--cCCCCEEEEEeCCCCCCE
Confidence 35788888776554 6789999999975321100 000 0122 3899999999999 9999
Q ss_pred EEEEe-CCeEEEEEcCCC-------ccccccCCCCCCeEEEEEecCCC-cEEEEEeCCCcEEEEEcccceEEEee--ccc
Q 001248 833 VMSAS-GGKISLFNMMTF-------KTMATFMPPPPAATFLAFHPQDN-NIIAIGMDDSSIQIYNVRVDEVKSKL--KGH 901 (1114)
Q Consensus 833 l~~~~-dg~i~iwd~~~~-------~~~~~~~~~~~~i~~l~~sp~d~-~~la~g~~dg~v~iwd~~~~~~~~~l--~~h 901 (1114)
|++++ ||+|++||+.++ +.+..+.+|...|.+++|+| ++ ++|++|+.||.|++||+.+++.+..+ .+|
T Consensus 97 l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 175 (402)
T 2aq5_A 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHP-TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVH 175 (402)
T ss_dssp EEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECS-SBTTEEEEEETTSCEEEEETTTTEEEEEECTTTC
T ss_pred EEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECc-CCCCEEEEEcCCCEEEEEECCCCCccEEEecCCC
Confidence 99999 999999999987 56778889999999999999 65 79999999999999999999999999 889
Q ss_pred ccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccC-CCCCCCCCCceEEEEccCCcEEEEE----eCCeEE
Q 001248 902 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP-TGRTPTAQSDTRVQFHQDQIHFLVV----HETQLA 976 (1114)
Q Consensus 902 ~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~i~~v~fspdg~~l~~~----~d~~i~ 976 (1114)
...|++++|+|++++|++++.|++|++||+.+++.. ... .+|.. ..+..++|+|+|++|+++ .|+.|+
T Consensus 176 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-----~~~~~~~~~--~~~~~~~~~~~~~~l~~g~~~~~d~~i~ 248 (402)
T 2aq5_A 176 PDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVV-----AEKDRPHEG--TRPVHAVFVSEGKILTTGFSRMSERQVA 248 (402)
T ss_dssp CSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEE-----EEEECSSCS--SSCCEEEECSTTEEEEEEECTTCCEEEE
T ss_pred CCceEEEEECCCCCEEEEEecCCcEEEEeCCCCcee-----eeeccCCCC--CcceEEEEcCCCcEEEEeccCCCCceEE
Confidence 999999999999999999999999999999985532 222 23332 247899999999999997 689999
Q ss_pred EEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEE-EcCCeEEEEEcCCCee-eEEeCCCcccCCCCCCCCccceEEE
Q 001248 977 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYAC-FLDATVCVFSAANLKL-RCRINPSAYLPAGVSSSNVHPLVIA 1054 (1114)
Q Consensus 977 iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~-s~Dg~I~vwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~ 1054 (1114)
+||+.+++.........|...+.+++|+|++++|+++ +.||.|++||+.+++. +..+.. .. | ...+. +++
T Consensus 249 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~---~~--~-~~~v~--~~~ 320 (402)
T 2aq5_A 249 LWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSM---FS--S-KESQR--GMG 320 (402)
T ss_dssp EEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEE---EC--C-SSCCS--EEE
T ss_pred EEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecc---cc--c-CCccc--ceE
Confidence 9999987763333323567889999999999999754 4799999999999884 444331 00 1 22255 899
Q ss_pred ecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1055 AHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1055 ~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
|+| ++.++++ .|+.+++|++.+++
T Consensus 321 ~sp-~~~~~~s--~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 321 YMP-KRGLEVN--KCEIARFYKLHERK 344 (402)
T ss_dssp ECC-GGGSCGG--GTEEEEEEEEETTE
T ss_pred Eec-cccccee--cceeEEEEEcCCCc
Confidence 999 5677664 57899999999876
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-28 Score=280.35 Aligned_cols=252 Identities=12% Similarity=0.074 Sum_probs=208.1
Q ss_pred CCCCccEEEEeeCCCEEEEEe-CCeEEEEEcC--CCccccccCCCCCCeEEEEEecCC--CcEEEEEeCCCcEEEEEccc
Q 001248 817 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMM--TFKTMATFMPPPPAATFLAFHPQD--NNIIAIGMDDSSIQIYNVRV 891 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~--~~~~~~~~~~~~~~i~~l~~sp~d--~~~la~g~~dg~v~iwd~~~ 891 (1114)
|...|.+++|+|++++|++++ ||.|++||+. +++.+..+.+|...|++++|++ + +++|++|+.||.|++||+.+
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~v~iwd~~~ 88 (379)
T 3jrp_A 10 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLIWKEEN 88 (379)
T ss_dssp CCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSCEEEEEEET
T ss_pred CcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCC-CCCCCEEEEeccCCEEEEEEcCC
Confidence 999999999999999999998 9999999998 6677788999999999999997 5 89999999999999999999
Q ss_pred ce--EEEeecccccCeeEEEEcCC--CCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEcc-----
Q 001248 892 DE--VKSKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ----- 962 (1114)
Q Consensus 892 ~~--~~~~l~~h~~~V~~l~~s~d--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fsp----- 962 (1114)
++ .+..+.+|...|++++|+|+ +.+|++++.|++|++||+......... ...+|. ..|.+++|+|
T Consensus 89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~---~~~~~~---~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 89 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI---IIDAHA---IGVNSASWAPATIEE 162 (379)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEE---EEECCT---TCEEEEEECCCC---
T ss_pred CceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeE---EecCCC---CceEEEEEcCccccc
Confidence 87 77888899999999999999 999999999999999999886432222 222333 4789999999
Q ss_pred --------CCcEEEE-EeCCeEEEEEcCCCceee--eeecCCCCcCeeEEEECCC---CCEEEEEEcCCeEEEEEcCCCe
Q 001248 963 --------DQIHFLV-VHETQLAIFETTKLECVK--QWVPRESSAPITHATFSCD---SQLVYACFLDATVCVFSAANLK 1028 (1114)
Q Consensus 963 --------dg~~l~~-~~d~~i~iwd~~~~~~~~--~~~~~~h~~~v~~l~~s~d---g~~l~s~s~Dg~I~vwd~~~~~ 1028 (1114)
++.+|++ +.|+.|++||+.++.... .....+|...|++++|+|+ +++|++++.||.|++||+.++.
T Consensus 163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 242 (379)
T ss_dssp -------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred cccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence 6999998 589999999998775432 2233488999999999999 8999999999999999999874
Q ss_pred eeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1029 LRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1029 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
........ ...+| ...+. +++|+| ++++|++++.||.|++|++..+.
T Consensus 243 ~~~~~~~~--~~~~~-~~~v~--~~~~s~-~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 243 GPWKKTLL--KEEKF-PDVLW--RASWSL-SGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp SCCEEEES--SSSCC-SSCEE--EEEECS-SSCCEEEEESSSSEEEEEEEETT
T ss_pred ccceeeee--ccccC-CCcEE--EEEEcC-CCCEEEEecCCCcEEEEeCCCCC
Confidence 22111100 11111 22244 899999 68999999999999999998643
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-27 Score=276.28 Aligned_cols=320 Identities=15% Similarity=0.182 Sum_probs=236.5
Q ss_pred CeeEEE---EcCCCCeEEEE--------------eCCCeEEEEEcc--CCceeeeeEeeccccCCeeEEEecCCCCeeEE
Q 001248 422 SVNRVI---WSPDGSLFGVA--------------YSRHIVQIYSYH--GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCV 482 (1114)
Q Consensus 422 ~V~~l~---~spdg~~las~--------------~~dg~i~iwd~~--~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l 482 (1114)
.+..++ |+|+++.++.. +.++.+.||.++ ++. ......+..+ ..+.+++|+|++. ++
T Consensus 62 g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~~~~~-~~~~~~~~s~~~~--~~ 137 (433)
T 3bws_A 62 ALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGIT-HRFISRFKTG-FQPKSVRFIDNTR--LA 137 (433)
T ss_dssp EEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCS-EEEEEEEECS-SCBCCCEESSSSE--EE
T ss_pred ccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCc-ceEEEEEcCC-CCceEEEEeCCCe--EE
Confidence 455556 66666555443 333433555543 342 2222244444 4567999999555 78
Q ss_pred EEecCCCCEEEEeCCCCccee-----EeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeE
Q 001248 483 ITCGDDKTIKVWDATNGAKQY-----IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCT 557 (1114)
Q Consensus 483 ~s~~~d~~i~iwd~~~~~~~~-----~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~ 557 (1114)
++++.++.|++||+.+++.+. .+.+|...|.+++|+ +++.++++++.|+.|++||+++.+....+..+...+.
T Consensus 138 ~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~ 215 (433)
T 3bws_A 138 IPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIP--EHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSK 215 (433)
T ss_dssp EEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEG--GGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEE
T ss_pred EEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEc--CCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCee
Confidence 888999999999999998877 455788999999984 4568999999999999999998777777666666666
Q ss_pred EEEEecCCCeEEeeecccceeEEEecCCCCEEE-EEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEE
Q 001248 558 TMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL-AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS 636 (1114)
Q Consensus 558 ~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 636 (1114)
+++|+|+++ .++ +++.++.|++||+.+++.+..+..+. .+.+++|+|+|++++++
T Consensus 216 ~~~~~~~~~---------------------~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~ 271 (433)
T 3bws_A 216 ILLYDPIRD---------------------LVYCSNWISEDISVIDRKTKLEIRKTDKIG---LPRGLLLSKDGKELYIA 271 (433)
T ss_dssp EEEEETTTT---------------------EEEEEETTTTEEEEEETTTTEEEEECCCCS---EEEEEEECTTSSEEEEE
T ss_pred EEEEcCCCC---------------------EEEEEecCCCcEEEEECCCCcEEEEecCCC---CceEEEEcCCCCEEEEE
Confidence 666666665 554 45589999999999999888876543 47899999999999888
Q ss_pred e--------CCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCc
Q 001248 637 T--------NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDV 708 (1114)
Q Consensus 637 ~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (1114)
+ .||.|++||+.+++ ....+
T Consensus 272 ~~~~~~~~~~dg~i~~~d~~~~~-~~~~~--------------------------------------------------- 299 (433)
T 3bws_A 272 QFSASNQESGGGRLGIYSMDKEK-LIDTI--------------------------------------------------- 299 (433)
T ss_dssp EEESCTTCSCCEEEEEEETTTTE-EEEEE---------------------------------------------------
T ss_pred ECCCCccccCCCeEEEEECCCCc-EEeec---------------------------------------------------
Confidence 7 36667777665441 11000
Q ss_pred cccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCC
Q 001248 709 RSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSS 788 (1114)
Q Consensus 709 ~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 788 (1114)
T Consensus 300 -------------------------------------------------------------------------------- 299 (433)
T 3bws_A 300 -------------------------------------------------------------------------------- 299 (433)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEE-e-CCeEEEEEcCCCccccccCCCCCCeEEEE
Q 001248 789 GKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA-S-GGKISLFNMMTFKTMATFMPPPPAATFLA 866 (1114)
Q Consensus 789 ~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~ 866 (1114)
.+...+.+++|+|+++++++. + ++.|++||+.+++....+. +...+.+++
T Consensus 300 ---------------------------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~ 351 (433)
T 3bws_A 300 ---------------------------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIA 351 (433)
T ss_dssp ---------------------------EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEE
T ss_pred ---------------------------cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEE
Confidence 012234567777777655443 4 7889999988887777665 567799999
Q ss_pred EecCCCcEEEEEeC---------------CCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeC-CCcEEEEe
Q 001248 867 FHPQDNNIIAIGMD---------------DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWS 930 (1114)
Q Consensus 867 ~sp~d~~~la~g~~---------------dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-D~~v~iwd 930 (1114)
|+| ++++|++++. ||.|++||+.+++.+..+..+ ..+.+++|+|||++|++++. |++|++|+
T Consensus 352 ~s~-dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~~ 429 (433)
T 3bws_A 352 LSP-DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSPDNRYLVISDFLDHQIRVYR 429 (433)
T ss_dssp ECT-TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred EcC-CCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcCCCCEEEEEECCCCeEEEEE
Confidence 999 8888888776 579999999999988888764 57999999999999998875 99999999
Q ss_pred CCC
Q 001248 931 SDG 933 (1114)
Q Consensus 931 ~~~ 933 (1114)
++.
T Consensus 430 ~~~ 432 (433)
T 3bws_A 430 RDG 432 (433)
T ss_dssp ETT
T ss_pred ecC
Confidence 874
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-28 Score=280.47 Aligned_cols=267 Identities=13% Similarity=0.227 Sum_probs=212.1
Q ss_pred eeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC
Q 001248 351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1114)
Q Consensus 351 ~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1114)
......|.+.|++++|+|++..+||+|+.||.|+|||+.+...... ..........+.+|...|.+++|+|
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~---------~~~~~~~~~~~~~h~~~v~~l~~~~ 191 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE---------PSGECQPDLRLRGHQKEGYGLSWNP 191 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC---------TTCCCCCSEEEECCSSCCCCEEECT
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC---------ccccCCCcEEecCCCCCeEEEEeCC
Confidence 3566779999999999998555799999999999999986211000 0000001114678999999999999
Q ss_pred CCC-eEEEEeCCCeEEEEEccCCce----eeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCC---cce
Q 001248 431 DGS-LFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG---AKQ 502 (1114)
Q Consensus 431 dg~-~las~~~dg~i~iwd~~~~~~----~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~~~ 502 (1114)
+++ +|++|+.||.|++||+.++.. +.....+.+|...|.+++|+|++.. +|++++.|+.|++||++++ +.+
T Consensus 192 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d~~~~~~~~~~ 270 (430)
T 2xyi_A 192 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRNNNTSKPS 270 (430)
T ss_dssp TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTCSCSSSCS
T ss_pred CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEECCCCCCCcce
Confidence 998 999999999999999987432 2223467789999999999995444 7999999999999999987 577
Q ss_pred eEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCC-CCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEE
Q 001248 503 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581 (1114)
Q Consensus 503 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~ 581 (1114)
..+..|...|.+++|++... .++++|+.||.|++||++.. .....+..|...|.+++|+|++.
T Consensus 271 ~~~~~~~~~v~~i~~~p~~~-~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~--------------- 334 (430)
T 2xyi_A 271 HTVDAHTAEVNCLSFNPYSE-FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE--------------- 334 (430)
T ss_dssp EEEECCSSCEEEEEECSSCT-TEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCT---------------
T ss_pred eEeecCCCCeEEEEeCCCCC-CEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCC---------------
Confidence 88889999999999976542 47999999999999999974 44556666777777777777664
Q ss_pred ecCCCCEEEEEeCCCeEEEEECCC--------------cceEEEeccCCCCCCcCeEEEcCCCC-EEEEEeCCCcEEEEE
Q 001248 582 FDTTKNRFLAAGDDFSIKFWDMDS--------------VQLLTSIDADGGLPASPRIRFNKDGC-LLAVSTNDNGIKILA 646 (1114)
Q Consensus 582 ~~~~~~~l~~~~~dg~i~iwd~~~--------------~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~dg~i~iwd 646 (1114)
.++++++.|+.|++||+.. .+.+..+..| ...|.+++|+|++. +|++++.||.|++|+
T Consensus 335 -----~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 335 -----TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH--TAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407 (430)
T ss_dssp -----TEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCC--SSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred -----CEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCC--CCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence 3588999999999999976 2455555544 45799999999999 999999999999999
Q ss_pred ccCC
Q 001248 647 TSDG 650 (1114)
Q Consensus 647 ~~~~ 650 (1114)
+...
T Consensus 408 ~~~~ 411 (430)
T 2xyi_A 408 MAEN 411 (430)
T ss_dssp ECHH
T ss_pred cccc
Confidence 8754
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=303.39 Aligned_cols=257 Identities=16% Similarity=0.207 Sum_probs=206.1
Q ss_pred ccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCC--C
Q 001248 355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD--G 432 (1114)
Q Consensus 355 ~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd--g 432 (1114)
.+|.+.|++++|+|+|++ |++|+.||.|+|||+.++..... ..+.+|.+.|.+++|+|+ +
T Consensus 6 ~gH~~~V~~l~~s~dg~~-latg~~dg~I~vwd~~~~~~~~~-----------------~~l~~h~~~V~~l~~s~~~~~ 67 (753)
T 3jro_A 6 NAHNELIHDAVLDYYGKR-LATCSSDKTIKIFEVEGETHKLI-----------------DTLTGHEGPVWRVDWAHPKFG 67 (753)
T ss_dssp --CCCCEEEECCCSSSCC-EEEEETTTEEEEEEEETTEEEEE-----------------EEECCCSSCEEEEEECCTTSC
T ss_pred ccCcceeEEEEECCCCCe-EEEEECCCcEEEEecCCCCCccc-----------------eeccCCcCceEEEEecCCCCC
Confidence 359999999999999995 99999999999999984432211 147889999999999998 9
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCC--CCeeEEEEecCCCCEEEEeCCCCc--ceeEeecc
Q 001248 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNGA--KQYIFEGH 508 (1114)
Q Consensus 433 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~h 508 (1114)
++|++|+.||.|++||+.+++. .....+.+|...|.+++|+|+ +. ++++|+.||+|++||+.++. ....+.+|
T Consensus 68 ~~l~s~s~Dg~I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~ 144 (753)
T 3jro_A 68 TILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIIIDAH 144 (753)
T ss_dssp SEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCCCCEEEECC
T ss_pred CEEEEEeCCCeEEEEECCCCcc-cccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCcceeEeecC
Confidence 9999999999999999998762 233367889999999999999 88 79999999999999998873 44567889
Q ss_pred ccCEEEEeeccCC-----------CceEEEEEecCCeEEEEEcCCCCCe----eeecCCCCeeEEEEEecCCCeEEeeec
Q 001248 509 EAPVYSVCPHHKE-----------NIQFIFSTALDGKIKAWLYDNLGSR----VDYEAPGRWCTTMAYSADGTRTYQGFR 573 (1114)
Q Consensus 509 ~~~v~~~~~~~~~-----------~~~~l~s~~~d~~i~~wd~~~~~~~----~~~~~~~~~v~~~~~s~~g~~~~~~~~ 573 (1114)
...|.+++|++.. ++.++++|+.||.|++||+++.... ..+..|...|.+++|+|++.
T Consensus 145 ~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~------- 217 (753)
T 3jro_A 145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL------- 217 (753)
T ss_dssp SSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS-------
T ss_pred CCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCC-------
Confidence 9999999998742 4689999999999999999876432 23444555555555555410
Q ss_pred ccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceE---EEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 574 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL---TSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 574 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
.++++++++.||.|++||+.++... .......+...|.+++|+|+|+++++++.||.|++|++.++
T Consensus 218 -----------~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 218 -----------LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp -----------SSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred -----------CCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 0457999999999999999886421 12222334567999999999999999999999999999865
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-27 Score=249.95 Aligned_cols=293 Identities=15% Similarity=0.129 Sum_probs=209.1
Q ss_pred eeEEEec-CCCCeeEEEEecCCCCEEEEeCCCC---cceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCC
Q 001248 468 VNDIAFS-HPNKQLCVITCGDDKTIKVWDATNG---AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL 543 (1114)
Q Consensus 468 V~~v~~s-~d~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 543 (1114)
+.++-|- +..+...+++++ ..+|++|+..++ ++++++..|..+|..+.+.++..+-+.++-+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------------- 107 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG------------- 107 (356)
T ss_dssp EEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC-------------
T ss_pred EeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec-------------
Confidence 5666664 344555567776 468999999999 8899999999999999987765433333322
Q ss_pred CCeeeecCCCCeeEEEEEecC----CCeEEeeecccceeEEEecCCCCEEEEEe--CCCeEEEEEC-CCcceEEEeccCC
Q 001248 544 GSRVDYEAPGRWCTTMAYSAD----GTRTYQGFRKRSLGVVQFDTTKNRFLAAG--DDFSIKFWDM-DSVQLLTSIDADG 616 (1114)
Q Consensus 544 ~~~~~~~~~~~~v~~~~~s~~----g~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~-~~~~~~~~~~~~~ 616 (1114)
..+...|.+++++|| +..+..+.+. +....+ ++++.+.+++ .|+.|++|++ .+|+.+..+..+.
T Consensus 108 ------~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l-~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~ 178 (356)
T 2w18_A 108 ------NLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGL-TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMP 178 (356)
T ss_dssp ------SSSEEEEEEECC------CCEEEEEEEEE--EEEEEE-TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECC
T ss_pred ------cccccceEEEEECCCccccccEEEeCCCe--EEEEec-CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCC
Confidence 123446789999999 7777776654 333444 4555555533 5999999999 4588888887775
Q ss_pred CCCCcCeEEEcC---CCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhcccccccc
Q 001248 617 GLPASPRIRFNK---DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLAD 693 (1114)
Q Consensus 617 ~~~~v~~~~~s~---d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1114)
. .+..++|++ ++.+|++++.|++|+|||+.++ +.++.+.+|..
T Consensus 179 ~--~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG-k~l~tL~g~~~------------------------------- 224 (356)
T 2w18_A 179 P--EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG-QLLKKMHIDDS------------------------------- 224 (356)
T ss_dssp C--SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC-CEEEEEECCC--------------------------------
T ss_pred C--ceeeEEeeccCCCCceEEEecCCCcEEEEECCCC-cEEEEEcCCCc-------------------------------
Confidence 4 688899999 7899999999999999999998 55555543211
Q ss_pred ccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCc
Q 001248 694 RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNA 773 (1114)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg 773 (1114)
+...+.+++|+|+|..+++++.+.
T Consensus 225 --------------------------------------------------------~v~~v~~vafSpdG~~lvs~s~~~ 248 (356)
T 2w18_A 225 --------------------------------------------------------YQASVCHKAYSEMGLLFIVLSHPC 248 (356)
T ss_dssp ----------------------------------------------------------CCCEEEEEEETTEEEEEEC---
T ss_pred --------------------------------------------------------ceeeeEEEEECCCCCEEEEeccCC
Confidence 223567889999998777665431
Q ss_pred eEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccc
Q 001248 774 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM 852 (1114)
Q Consensus 774 ~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~ 852 (1114)
. + ..+++|+ |++|++||..+++.+
T Consensus 249 ~--~-----------------------------------------------------w~laSGs~D~tIklWd~~tgk~l 273 (356)
T 2w18_A 249 A--K-----------------------------------------------------ESESLRSPVFQLIVINPKTTLSV 273 (356)
T ss_dssp ----------------------------------------------------------------CCEEEEEEETTTTEEE
T ss_pred C--c-----------------------------------------------------ceeeccCCCcEEEEEECCCCEEE
Confidence 1 1 1356777 899999999998877
Q ss_pred ccc-----CCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCee-EEEEcCCCCEEEEEeCCCcE
Q 001248 853 ATF-----MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT-GLAFSHALNVLVSSGADSQL 926 (1114)
Q Consensus 853 ~~~-----~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~-~l~~s~d~~~l~s~s~D~~v 926 (1114)
..+ .+|...+.+..+ ++.++|+|+.||+|+|||+.+++++.++.+|...+. +++|||||++|+||+.|++|
T Consensus 274 ~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TI 350 (356)
T 2w18_A 274 GVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNI 350 (356)
T ss_dssp EEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCE
T ss_pred EEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcE
Confidence 654 356555444433 467999999999999999999999999999988766 58999999999999999999
Q ss_pred EEEeC
Q 001248 927 CVWSS 931 (1114)
Q Consensus 927 ~iwd~ 931 (1114)
+|||+
T Consensus 351 klWd~ 355 (356)
T 2w18_A 351 FVYHY 355 (356)
T ss_dssp EEEEE
T ss_pred EEecC
Confidence 99985
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-27 Score=274.96 Aligned_cols=258 Identities=16% Similarity=0.079 Sum_probs=201.1
Q ss_pred CCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcc---eeEEeeeeeeccCCC---------------------------
Q 001248 358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE---RLVLRNFKVWDLGAC--------------------------- 407 (1114)
Q Consensus 358 ~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~---~~~~~~~~~~d~~~~--------------------------- 407 (1114)
..++.|++|+|||+ +|+++ .++.|++||+.+|+ .+.. |.....
T Consensus 4 ~~p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (450)
T 2vdu_B 4 IHPLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAGK-----WSDDFDKIQESRNTTAKEQQGQSSENENENKKL 76 (450)
T ss_dssp ECCCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEEE-----EECCC----------------------------
T ss_pred cccEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeeee-----cCCccccccccccccchhhcccccccccccccc
Confidence 35789999999999 46655 57899999999998 4332 211000
Q ss_pred -------------CcccccccccCCCCCeeEEEEcCCCCeE-EEEeCCCeEEEEEcc--CCceeeeeEeeccccCCeeEE
Q 001248 408 -------------SMPLQAALVKDPGVSVNRVIWSPDGSLF-GVAYSRHIVQIYSYH--GGDEVRQHLEIDAHVGGVNDI 471 (1114)
Q Consensus 408 -------------~~~~~~~~~~~h~~~V~~l~~spdg~~l-as~~~dg~i~iwd~~--~~~~~~~~~~l~~h~~~V~~v 471 (1114)
..........+|.+.|.+++|+|+|++| ++|+.||.|+|||+. +++.+... ....|...|.++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~v~~~ 155 (450)
T 2vdu_B 77 KSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLR-KRFCFSKRPNAI 155 (450)
T ss_dssp -----------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEE-EEEECSSCEEEE
T ss_pred ccCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeee-ecccCCCCceEE
Confidence 0000111234677789999999999996 889999999999999 77766532 123677899999
Q ss_pred EecCCCCeeEEEEecCCCCEEEEeCCCCccee----EeeccccCEEEEeeccC-CCceEEEEEecCCeEEEEEcCCCCCe
Q 001248 472 AFSHPNKQLCVITCGDDKTIKVWDATNGAKQY----IFEGHEAPVYSVCPHHK-ENIQFIFSTALDGKIKAWLYDNLGSR 546 (1114)
Q Consensus 472 ~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~----~~~~h~~~v~~~~~~~~-~~~~~l~s~~~d~~i~~wd~~~~~~~ 546 (1114)
+|+|+++ +|++|+.|+.|++|++.+++... .+.+|...|.+++|+++ ..+.+|++++.|+.|++||+.+....
T Consensus 156 ~~sp~~~--~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 233 (450)
T 2vdu_B 156 SIAEDDT--TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIV 233 (450)
T ss_dssp EECTTSS--EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCE
T ss_pred EEcCCCC--EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCcee
Confidence 9999999 79999999999999999887654 78899999999998775 22589999999999999999987766
Q ss_pred ee-ecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccC----------
Q 001248 547 VD-YEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD---------- 615 (1114)
Q Consensus 547 ~~-~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------- 615 (1114)
.. +..|...|.+++|+ ++ ++|++++.|+.|++||+.+++.+..+..+
T Consensus 234 ~~~~~~h~~~v~~~~~s-d~---------------------~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 291 (450)
T 2vdu_B 234 DKWLFGHKHFVSSICCG-KD---------------------YLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQ 291 (450)
T ss_dssp EEECCCCSSCEEEEEEC-ST---------------------TEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTT
T ss_pred eeeecCCCCceEEEEEC-CC---------------------CEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhc
Confidence 55 44566666666665 55 47999999999999999999988887632
Q ss_pred -------------CCCCCcCeEEEcCCCCEEEEEe-CCCcEEEEEc
Q 001248 616 -------------GGLPASPRIRFNKDGCLLAVST-NDNGIKILAT 647 (1114)
Q Consensus 616 -------------~~~~~v~~~~~s~d~~~l~~~~-~dg~i~iwd~ 647 (1114)
.....+.+++|+|++++|++++ .++.|++|++
T Consensus 292 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 292 HLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp SBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred ccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 1123578999999999999998 8999999998
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-26 Score=264.77 Aligned_cols=227 Identities=15% Similarity=0.125 Sum_probs=179.0
Q ss_pred CeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeE-EEEeCCCeEEEEEc
Q 001248 371 QTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF-GVAYSRHIVQIYSY 449 (1114)
Q Consensus 371 ~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-as~~~dg~i~iwd~ 449 (1114)
++++++++.|+.|++||+.+++.+.. +..|. .+.+++|+|+|++| ++++.|+.|++||+
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~-------------------~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~ 61 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTAT-------------------IPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDT 61 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEE-------------------EECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEET
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEE-------------------eecCC-CcceEEECCCCCEEEEECCCCCeEEEEEC
Confidence 35799999999999999999887652 44454 58999999999987 56668999999999
Q ss_pred cCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEE-EE
Q 001248 450 HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI-FS 528 (1114)
Q Consensus 450 ~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s 528 (1114)
.+++.+. .+..|. .+.+++|+|+++. ++++++.++.|++||+.+++.+..+..| ..+.+++|+++ ++.+ ++
T Consensus 62 ~~~~~~~---~~~~~~-~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~d--g~~l~~~ 133 (391)
T 1l0q_A 62 ATNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPD--GKKLYVT 133 (391)
T ss_dssp TTTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTT--SSEEEEE
T ss_pred CCCeEEE---EEECCC-CccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCC--CCEEEEE
Confidence 9988665 444444 8999999999995 4467778899999999999988888754 56888898654 4555 78
Q ss_pred EecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEE-EEEeCCCeEEEEECCCcc
Q 001248 529 TALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF-LAAGDDFSIKFWDMDSVQ 607 (1114)
Q Consensus 529 ~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~ 607 (1114)
++.|+.|++||+.+.+....+..+ ..+..++ |+|+++++ ++++.++.|++||+.+++
T Consensus 134 ~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~---------------------~~~dg~~l~~~~~~~~~v~~~d~~~~~ 191 (391)
T 1l0q_A 134 NNGDKTVSVINTVTKAVINTVSVG-RSPKGIA---------------------VTPDGTKVYVANFDSMSISVIDTVTNS 191 (391)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECC-SSEEEEE---------------------ECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred eCCCCEEEEEECCCCcEEEEEecC-CCcceEE---------------------ECCCCCEEEEEeCCCCEEEEEECCCCe
Confidence 888999999999876555444332 2234444 45555456 567789999999999998
Q ss_pred eEEEeccCCCCCCcCeEEEcCCCCEEEEEe---CCCcEEEEEccCC
Q 001248 608 LLTSIDADGGLPASPRIRFNKDGCLLAVST---NDNGIKILATSDG 650 (1114)
Q Consensus 608 ~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~---~dg~i~iwd~~~~ 650 (1114)
.+..+..+. .+.+++|+|+++++++++ .++.|++||+.++
T Consensus 192 ~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~ 234 (391)
T 1l0q_A 192 VIDTVKVEA---APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (391)
T ss_dssp EEEEEECSS---EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred EEEEEecCC---CccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence 888776542 578999999999999888 6899999998776
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-26 Score=263.94 Aligned_cols=329 Identities=8% Similarity=0.086 Sum_probs=240.1
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCE
Q 001248 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 512 (1114)
Q Consensus 433 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 512 (1114)
.++++++.|+.|++||+.+++.+. .+..|. .+.+++|+|+++. ++++++.|++|++||+.+++.+..+..+. .+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~---~~~~~~-~~~~~~~s~dg~~-l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v 76 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTA---TIPVGS-NPMGAVISPDGTK-VYVANAHSNDVSIIDTATNNVIATVPAGS-SP 76 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEE---EEECSS-SEEEEEECTTSSE-EEEEEGGGTEEEEEETTTTEEEEEEECSS-SE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEE---EeecCC-CcceEEECCCCCE-EEEECCCCCeEEEEECCCCeEEEEEECCC-Cc
Confidence 467888899999999999988665 455554 5899999999995 45788899999999999999998888665 89
Q ss_pred EEEeeccCCCceEE-EEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEE-E
Q 001248 513 YSVCPHHKENIQFI-FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF-L 590 (1114)
Q Consensus 513 ~~~~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l-~ 590 (1114)
.+++|+++ ++++ ++++.++.|++||+.+.+....+..+ ..+.+++ |+|+++.+ +
T Consensus 77 ~~~~~spd--g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~---------------------~s~dg~~l~~ 132 (391)
T 1l0q_A 77 QGVAVSPD--GKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLA---------------------LSPDGKKLYV 132 (391)
T ss_dssp EEEEECTT--SSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEE---------------------ECTTSSEEEE
T ss_pred cceEECCC--CCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEE---------------------ECCCCCEEEE
Confidence 99998654 4566 45556799999999876555444332 2344444 45555556 6
Q ss_pred EEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEE-EEEeCCCcEEEEEccCCccceeeccccccccccCCC
Q 001248 591 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL-AVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE 669 (1114)
Q Consensus 591 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 669 (1114)
+++.++.|++||+.+++.+..+..+. .+.+++|+|+++.+ ++++.++.|++||+.++ +....+.
T Consensus 133 ~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~----------- 197 (391)
T 1l0q_A 133 TNNGDKTVSVINTVTKAVINTVSVGR---SPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-SVIDTVK----------- 197 (391)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE-----------
T ss_pred EeCCCCEEEEEECCCCcEEEEEecCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCC-eEEEEEe-----------
Confidence 77789999999999999888887653 36899999999887 56778899999998765 1111100
Q ss_pred CCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccc
Q 001248 670 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL 749 (1114)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~ 749 (1114)
T Consensus 198 -------------------------------------------------------------------------------- 197 (391)
T 1l0q_A 198 -------------------------------------------------------------------------------- 197 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeC
Q 001248 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d 829 (1114)
+...+.+++|+|+
T Consensus 198 -------------------------------------------------------------------~~~~~~~~~~~~~ 210 (391)
T 1l0q_A 198 -------------------------------------------------------------------VEAAPSGIAVNPE 210 (391)
T ss_dssp -------------------------------------------------------------------CSSEEEEEEECTT
T ss_pred -------------------------------------------------------------------cCCCccceEECCC
Confidence 1223445666667
Q ss_pred CCEEEEEe----CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEE-EEEeCCCcEEEEEcccceEEEeecccccC
Q 001248 830 DSYVMSAS----GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNII-AIGMDDSSIQIYNVRVDEVKSKLKGHSKR 904 (1114)
Q Consensus 830 ~~~l~~~~----dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l-a~g~~dg~v~iwd~~~~~~~~~l~~h~~~ 904 (1114)
++++++++ ++.|++||+.+++.+..+..+. .+.+++|+| ++++| ++++.|+.|++||+.+++.+..+..|..+
T Consensus 211 g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~ 288 (391)
T 1l0q_A 211 GTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTP-DGKKVYVALSFXNTVSVIDTATNTITATMAVGKNP 288 (391)
T ss_dssp SSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred CCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEcc-CCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCC
Confidence 76666554 5788889988888777777654 588999999 77665 67789999999999999998888766544
Q ss_pred ee---EEEEcC------------CC----------CEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEE
Q 001248 905 IT---GLAFSH------------AL----------NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 959 (1114)
Q Consensus 905 V~---~l~~s~------------d~----------~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 959 (1114)
.. .+.+.| +. ..+.+.+.|.++++|++..+.... . ......
T Consensus 289 ~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~~------~--------~~~~~~ 354 (391)
T 1l0q_A 289 YASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSSK------K--------QNPTHT 354 (391)
T ss_dssp ECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEEC------S--------SSCEEC
T ss_pred CccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcccC------c--------CCCeEE
Confidence 21 122222 11 346667788999999998754311 0 123467
Q ss_pred EccCCcEEEE
Q 001248 960 FHQDQIHFLV 969 (1114)
Q Consensus 960 fspdg~~l~~ 969 (1114)
|+++|.|.+.
T Consensus 355 ~~~~g~y~~~ 364 (391)
T 1l0q_A 355 YSETGIYTVR 364 (391)
T ss_dssp CSSCEEEEEE
T ss_pred eCCCceEEEE
Confidence 9999998876
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-27 Score=251.58 Aligned_cols=277 Identities=11% Similarity=0.146 Sum_probs=205.4
Q ss_pred cccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCcccc
Q 001248 715 KPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATAS 794 (1114)
Q Consensus 715 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 794 (1114)
+..+.......|++|+..+...-.....+ ++|..+|..+.+.||...|++..-..
T Consensus 54 ~~~~~~~~~~~v~lw~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~--------------------- 108 (356)
T 2w18_A 54 EPCIITACEDVVSLWKALDAWQWEKLYTW----HFAEVPVLQIVPVPDVYNLVCVALGN--------------------- 108 (356)
T ss_dssp EEEEEEEESSEEEEEEESSSSBEEEEEEE----ECCSSCEEEECCCTTCCSCEEEEECS---------------------
T ss_pred ccEEEEeccceEEEcccCCCccceeeEEE----eccCceeEEEEEcCcccceeeeeecc---------------------
Confidence 34455556689999999885332333333 34778999999999877666543321
Q ss_pred ccccccCCCCCccccccCCCCCCCCCccEEEEeeC----CCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecC
Q 001248 795 VAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN----DSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ 870 (1114)
Q Consensus 795 ~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d----~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~ 870 (1114)
-+...|.+++++|| ++++++++ ..+++|++ +
T Consensus 109 ---------------------~~~~~v~sla~spd~~~~~~~l~s~g-~~~~v~~l----------------------~- 143 (356)
T 2w18_A 109 ---------------------LEIREIRALFCSSDDESEKQVLLKSG-NIKAVLGL----------------------T- 143 (356)
T ss_dssp ---------------------SSEEEEEEECC------CCEEEEEEE-EEEEEEEE----------------------T-
T ss_pred ---------------------ccccceEEEEECCCccccccEEEeCC-CeEEEEec----------------------C-
Confidence 14567899999999 99999877 34777854 2
Q ss_pred CCcEEEEEe--CCCcEEEEEc-ccceEEEeecccccCeeEEEEcC---CCCEEEEEeCCCcEEEEeCCCCcccccccccc
Q 001248 871 DNNIIAIGM--DDSSIQIYNV-RVDEVKSKLKGHSKRITGLAFSH---ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQI 944 (1114)
Q Consensus 871 d~~~la~g~--~dg~v~iwd~-~~~~~~~~l~~h~~~V~~l~~s~---d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 944 (1114)
+++++.+++ .|+.|++|++ .+|+.+..+.+|...++.++|++ ++.+|||++.|++|+|||+.+++. +..
T Consensus 144 ~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~-----l~t 218 (356)
T 2w18_A 144 KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQL-----LKK 218 (356)
T ss_dssp TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCE-----EEE
T ss_pred CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcE-----EEE
Confidence 455666543 5888888888 44777888889999999999999 789999999999999999999764 233
Q ss_pred CCCCCCCCCCceEEEEccCCcEEEE-------------EeCCeEEEEEcCCCceeeeee---cCCCCcCeeEEEECCCCC
Q 001248 945 PTGRTPTAQSDTRVQFHQDQIHFLV-------------VHETQLAIFETTKLECVKQWV---PRESSAPITHATFSCDSQ 1008 (1114)
Q Consensus 945 ~~~~~~~~~~i~~v~fspdg~~l~~-------------~~d~~i~iwd~~~~~~~~~~~---~~~h~~~v~~l~~s~dg~ 1008 (1114)
+.++......+.+++|+|||+++++ +.|++|++||..+++++..+. ..+|...+.+..++ +.
T Consensus 219 L~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~ 296 (356)
T 2w18_A 219 MHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DH 296 (356)
T ss_dssp EECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TT
T ss_pred EcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CC
Confidence 3333222246788999999998743 367899999999999877653 34776666555554 88
Q ss_pred EEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEecc
Q 001248 1009 LVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1078 (1114)
Q Consensus 1009 ~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~ 1078 (1114)
++++++.|++|+|||+.+++.+.++. +|....+. .++|+| |+++|++|+.|++|+|||+.
T Consensus 297 ~lASgS~DgTIkIWDl~tGk~l~tL~-------gH~~~vvs--~vafSP-DG~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 297 CAAAILTSGTIAIWDLLLGQCTALLP-------PVSDQHWS--FVKWSG-TDSHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp EEEEEETTSCEEEEETTTCSEEEEEC-------CC--CCCC--EEEECS-SSSEEEEECTTSCEEEEEEC
T ss_pred EEEEEcCCCcEEEEECCCCcEEEEec-------CCCCCeEE--EEEECC-CCCEEEEEECCCcEEEecCC
Confidence 99999999999999999999999887 44444343 589999 78999999999999999963
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-26 Score=260.78 Aligned_cols=299 Identities=14% Similarity=0.203 Sum_probs=209.4
Q ss_pred ccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEe
Q 001248 416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495 (1114)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd 495 (1114)
...|.+.|.+++|||||++||+|+.++ ++|||+.+++... . .+...+..++|.++++. ++++++.|++|++||
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~---~--~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIM---S--QEMRHLSKVRMLHRTNY-VAFVTGVKEVVHIWD 87 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEE---E--EECSCCCEEEECTTSSE-EEEECSSTTEEEEEE
T ss_pred cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceee---e--eecCCeEEEEEcCCCCE-EEEEECCccEEEEEE
Confidence 578999999999999999999998776 7899998865443 2 22235888999998884 446788889999999
Q ss_pred CCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCC-CCeeeecCCCCeeEEEEEecCCCeEEeeecc
Q 001248 496 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1114)
Q Consensus 496 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~ 574 (1114)
+.+++++..+. |...|.++++++ + .++.+ .|+.|++||+.+. +....+.. ....
T Consensus 88 ~~~~~~~~~~~-~~~~v~~v~~~~--~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~---------------- 142 (355)
T 3vu4_A 88 DVKKQDVSRIK-VDAPVKDLFLSR--E--FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGV---------------- 142 (355)
T ss_dssp TTTTEEEEEEE-CSSCEEEEEECS--S--EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEE----------------
T ss_pred CCCCcEEEEEE-CCCceEEEEEcC--C--EEEEE-EcCEEEEEECCCCceeeEEecc---CCce----------------
Confidence 99999999887 677999999754 2 34433 4889999999876 44333322 1122
Q ss_pred cceeEEEecCCCCEEEE--EeCCCeEEEEECCCcc----------------eEEEeccCCCCCCcCeEEEcCCCCEEEEE
Q 001248 575 RSLGVVQFDTTKNRFLA--AGDDFSIKFWDMDSVQ----------------LLTSIDADGGLPASPRIRFNKDGCLLAVS 636 (1114)
Q Consensus 575 ~~v~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~----------------~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 636 (1114)
+++++ +++++ |+.+|.|++||+.++. .+..+..| ...|.+++|+|+|++|+++
T Consensus 143 -----~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h--~~~v~~~~~s~~g~~l~s~ 213 (355)
T 3vu4_A 143 -----CEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH--TNPIKMVRLNRKSDMVATC 213 (355)
T ss_dssp -----EEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCC--SSCEEEEEECTTSSEEEEE
T ss_pred -----EEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEcc--CCceEEEEECCCCCEEEEE
Confidence 22333 34555 5789999999998865 15666655 5589999999999999999
Q ss_pred eCCCc-EEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCc
Q 001248 637 TNDNG-IKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVK 715 (1114)
Q Consensus 637 ~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1114)
+.||+ |++||+.++ +.+..+..
T Consensus 214 s~d~~~v~iwd~~~~-~~~~~~~~-------------------------------------------------------- 236 (355)
T 3vu4_A 214 SQDGTIIRVFKTEDG-VLVREFRR-------------------------------------------------------- 236 (355)
T ss_dssp ETTCSEEEEEETTTC-CEEEEEEC--------------------------------------------------------
T ss_pred eCCCCEEEEEECCCC-cEEEEEEc--------------------------------------------------------
Confidence 99998 999999887 33332210
Q ss_pred ccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccc--
Q 001248 716 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATA-- 793 (1114)
Q Consensus 716 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~-- 793 (1114)
..|...|.+++|+|++++|++++.|+.|++|++.............
T Consensus 237 --------------------------------g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~ 284 (355)
T 3vu4_A 237 --------------------------------GLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWI 284 (355)
T ss_dssp --------------------------------TTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTE
T ss_pred --------------------------------CCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCccccccccee
Confidence 0156789999999999999999999999999987543211100000
Q ss_pred --cccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCc
Q 001248 794 --SVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK 850 (1114)
Q Consensus 794 --~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~ 850 (1114)
...-..|.... . .+. .........++|++|+++|++++ ||.+++|++..+.
T Consensus 285 ~~~~~~~~~~~~~----~-~~~-~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 285 NMKYFQSEWSLCN----F-KLS-VDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp ECCCCCCSSCSEE----E-ECC-CCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred eccccccccceeE----E-Eec-cCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 00000111100 0 011 01233457799999999999998 9999999987543
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.5e-27 Score=272.98 Aligned_cols=246 Identities=9% Similarity=0.041 Sum_probs=200.5
Q ss_pred CCCCccEEEEeeCCCEE-EEEe-CCeEEEEEcC--CCccccccC--CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcc
Q 001248 817 PEEAVPCFALSKNDSYV-MSAS-GGKISLFNMM--TFKTMATFM--PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 890 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~~l-~~~~-dg~i~iwd~~--~~~~~~~~~--~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~ 890 (1114)
|...|.+++|+|++++| ++++ ||.|++||+. +++.+..+. .+...|.+++|+| ++++|++|+.||.|++|++.
T Consensus 101 ~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~~g~v~~~~~~ 179 (450)
T 2vdu_B 101 IYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE-DDTTVIIADKFGDVYSIDIN 179 (450)
T ss_dssp CCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSEEEEEETT
T ss_pred cCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC-CCCEEEEEeCCCcEEEEecC
Confidence 66689999999999996 7887 8999999999 888887775 5678899999999 89999999999999999998
Q ss_pred cceEEE----eecccccCeeEEEEcCC---CCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccC
Q 001248 891 VDEVKS----KLKGHSKRITGLAFSHA---LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 963 (1114)
Q Consensus 891 ~~~~~~----~l~~h~~~V~~l~~s~d---~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspd 963 (1114)
+++... .+.+|...|++++|+|+ +++|++++.|++|++||+.+++... ....+|. ..|.+++|+ +
T Consensus 180 ~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~----~~~~~h~---~~v~~~~~s-d 251 (450)
T 2vdu_B 180 SIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD----KWLFGHK---HFVSSICCG-K 251 (450)
T ss_dssp SCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE----EECCCCS---SCEEEEEEC-S
T ss_pred CcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee----eeecCCC---CceEEEEEC-C
Confidence 876544 78899999999999999 9999999999999999998754321 1233444 479999999 9
Q ss_pred CcEEEE-EeCCeEEEEEcCCCceeeeeecC-----------------------CCCcCeeEEEECCCCCEEEEEE-cCCe
Q 001248 964 QIHFLV-VHETQLAIFETTKLECVKQWVPR-----------------------ESSAPITHATFSCDSQLVYACF-LDAT 1018 (1114)
Q Consensus 964 g~~l~~-~~d~~i~iwd~~~~~~~~~~~~~-----------------------~h~~~v~~l~~s~dg~~l~s~s-~Dg~ 1018 (1114)
|++|++ +.|+.|++||+.+++++..+... .+...|.+++|+|++++|++++ .|+.
T Consensus 252 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~ 331 (450)
T 2vdu_B 252 DYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKC 331 (450)
T ss_dssp TTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCe
Confidence 999999 68999999999999988777521 2245799999999999999999 8999
Q ss_pred EEEEEc--CCC---eeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeC-------CCcEEEEeccCCCCcc
Q 001248 1019 VCVFSA--ANL---KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS-------DGGVHVFEPLESEGKW 1084 (1114)
Q Consensus 1019 I~vwd~--~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~-------Dg~v~vW~i~~~~~~~ 1084 (1114)
|+||++ .++ +.+..+. ++ -.+.+++|+| + .++++.+. +..|.+|.+....+.|
T Consensus 332 i~iw~~~~~~~~~l~~~~~~~-------~~----~~v~~~~~~~-~-~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~ 396 (450)
T 2vdu_B 332 IIILEMSEKQKGDLALKQIIT-------FP----YNVISLSAHN-D-EFQVTLDNKESSGVQKNFAKFIEYNLNENSF 396 (450)
T ss_dssp EEEEEECSSSTTCEEEEEEEE-------CS----SCEEEEEEET-T-EEEEEECCTTCCSSCCCSEEEEEEETTTTEE
T ss_pred EEEEEeccCCCCceeeccEec-------cC----CceEEEEecC-C-cEEEEEecccCCCCCCcceEEEEEEcCCCeE
Confidence 999999 555 5555554 21 1234899998 4 45555433 5568999887665555
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-27 Score=266.20 Aligned_cols=198 Identities=12% Similarity=0.071 Sum_probs=158.3
Q ss_pred CCCCccEEEEee--CCCEEEEEe-CCeEEEEEcCCCccccccC-CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc
Q 001248 817 PEEAVPCFALSK--NDSYVMSAS-GGKISLFNMMTFKTMATFM-PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 892 (1114)
Q Consensus 817 ~~~~v~~v~~s~--d~~~l~~~~-dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~ 892 (1114)
|...|.+++++| +++++++++ ||+|++||+.+++...... .+...+++++|+| ++.+||+|+.||.|++||+.++
T Consensus 124 ~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~ 202 (343)
T 3lrv_A 124 SANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSP 202 (343)
T ss_dssp CSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCT
T ss_pred CCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCC
Confidence 667899999999 999999999 9999999999988876653 3455799999999 9999999999999999999999
Q ss_pred eEE-Eeecc-cccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCc--eEEEEccCCcEEE
Q 001248 893 EVK-SKLKG-HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD--TRVQFHQDQIHFL 968 (1114)
Q Consensus 893 ~~~-~~l~~-h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i--~~v~fspdg~~l~ 968 (1114)
+.+ ..+.+ |.+.|++++|+|++.+|++++ |++|++||+.+.+... .+.....+.. .+ .+++|+|+|++|+
T Consensus 203 ~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~g~~l~ 276 (343)
T 3lrv_A 203 DQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTL--AYPTYTIPEF---KTGTVTYDIDDSGKNMI 276 (343)
T ss_dssp TSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCB--SSCCCBC--------CCEEEEECTTSSEEE
T ss_pred CCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcce--eecccccccc---cccceEEEECCCCCEEE
Confidence 877 78888 999999999999999999999 4599999999854321 1111111211 22 4699999999999
Q ss_pred E-Ee-CCeEEEEEcCCCceeeeeecCCCCcCeeEEEECC---CCCEEEEEEcCCeEEEEEcCCC
Q 001248 969 V-VH-ETQLAIFETTKLECVKQWVPRESSAPITHATFSC---DSQLVYACFLDATVCVFSAANL 1027 (1114)
Q Consensus 969 ~-~~-d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~---dg~~l~s~s~Dg~I~vwd~~~~ 1027 (1114)
+ +. |+.+++|+..+....... .++..++|++ +.+.|++++.||.+.++-....
T Consensus 277 ~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~ 334 (343)
T 3lrv_A 277 AYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDVVCGDGGIAAILKTND 334 (343)
T ss_dssp EEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEEEEETTEEEEEEECSS
T ss_pred EecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEEEecCCceEEEEecCC
Confidence 9 44 999999999766543222 4678888998 9999999999999998865443
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6e-28 Score=274.92 Aligned_cols=267 Identities=10% Similarity=-0.022 Sum_probs=186.5
Q ss_pred cCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC-----
Q 001248 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP----- 430 (1114)
Q Consensus 356 ~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp----- 430 (1114)
.|...+....+++++. +||+|+.|++|+|||+.+++......+ ..+.+|.+.|.+|+|+|
T Consensus 87 ~~~~~~~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~~~--------------~~~~gH~~~v~~v~~~p~~~~~ 151 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQHVL--------------GGKSGHHNFVNDIDIADVYSAD 151 (393)
T ss_dssp ----------CCEEEE-EEEEEETTSCEEEEEEETTEEEEEEEE--------------CTTTSCSSCEEEEEEEEEECTT
T ss_pred ccCCCcceeecCCCCC-EEEEEeCCCcEEEEECCCCccceeeee--------------cccCCCCCceEEEEEccccccc
Confidence 3555555566666676 599999999999999998876543222 15789999999999998
Q ss_pred ---CCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeE---
Q 001248 431 ---DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--- 504 (1114)
Q Consensus 431 ---dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~--- 504 (1114)
||++||+|+.|++|+|||+.++..+. .+.+|...|.+++|+|++.. +|++|+.|++|++||+.+++....
T Consensus 152 ~~~d~~~las~s~D~tv~~Wd~~~~~~~~---~~~~~~~~v~~v~~~p~~~~-~l~~~~~d~~v~~wd~~t~~~~~~~~~ 227 (393)
T 4gq1_A 152 NRLAEQVIASVGDDCTLIIWRLTDEGPIL---AGYPLSSPGISVQFRPSNPN-QLIVGERNGNIRIFDWTLNLSAEENSQ 227 (393)
T ss_dssp CSEEEEEEEEEETTSEEEEEEEETTEEEE---EEEECSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCCC-------
T ss_pred cCCCCCEEEEEECCCeEEEEECCCCceee---eecCCCCCcEEEEECCCCCc-eEEecCCCCEEEEEECCCCcccccccc
Confidence 89999999999999999999877555 56688999999999999865 699999999999999988764432
Q ss_pred ----------------------eeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEe
Q 001248 505 ----------------------FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS 562 (1114)
Q Consensus 505 ----------------------~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s 562 (1114)
..+|...+.++.|+ .+++..+++++.|+++++||+........+..+...+..+.+.
T Consensus 228 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~-~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~ 306 (393)
T 4gq1_A 228 TELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWI-GSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLL 306 (393)
T ss_dssp ---CSCCCSEEEESGGGC------CCSSSCSEEEEE-TTTTCEEEEECTTSEEEEEEC-------------------CCS
T ss_pred cCCcccceEEecccccceeeeecccccccceeeeee-cCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEc
Confidence 23577788888875 3577899999999999999999887777777777777777777
Q ss_pred cCCCeEEeeecccceeEEEecCCCC-EEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCc
Q 001248 563 ADGTRTYQGFRKRSLGVVQFDTTKN-RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG 641 (1114)
Q Consensus 563 ~~g~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~ 641 (1114)
++++... .....+..+.+.+.++ ++++|+.||.|++||..+++....+..+. ..|.+++|+|||++|++++.+|
T Consensus 307 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~--~~V~svafspdG~~LA~as~~G- 381 (393)
T 4gq1_A 307 PNVQGIS--LFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLG--MPIVDFCWHQDGSHLAIATEGS- 381 (393)
T ss_dssp CSEEEEC--SSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECS--SCEEEEEECTTSSEEEEEESSE-
T ss_pred ccccccc--ccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCC--CcEEEEEEcCCCCEEEEEeCCC-
Confidence 7754221 1122233333444444 55667889999999999998888776654 4799999999999999998765
Q ss_pred EEEEEc
Q 001248 642 IKILAT 647 (1114)
Q Consensus 642 i~iwd~ 647 (1114)
+.+|.+
T Consensus 382 v~lvrL 387 (393)
T 4gq1_A 382 VLLTRL 387 (393)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 556654
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-27 Score=270.38 Aligned_cols=351 Identities=13% Similarity=0.108 Sum_probs=213.2
Q ss_pred ccCCCCceEEEE---cCCCCeEEEEEecCCcEEEEEcCCcce-----eEEeeeeeeccCCCCc-----ccccccccCCCC
Q 001248 355 LNQGSSPMSMDF---HPVQQTLLLVGTNVGDIGLWEVGSRER-----LVLRNFKVWDLGACSM-----PLQAALVKDPGV 421 (1114)
Q Consensus 355 ~~h~~~v~~v~~---spdg~~ll~tg~~dg~v~iwd~~~~~~-----~~~~~~~~~d~~~~~~-----~~~~~~~~~h~~ 421 (1114)
+.-+....++.| +|++..++++| .++.|.+|+...... ........++...... +........|..
T Consensus 12 lpl~~~p~~~~w~~~~~~~~~l~a~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (393)
T 4gq1_A 12 LPLNVRPYTTTWCSQSPSCSNLLAIG-HDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDG 90 (393)
T ss_dssp CCTTCCEEEEEECTTSGGGTTEEEEE-ESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----
T ss_pred ecCCCCCeEEEEeCCCCCCCCEEEEE-CCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCC
Confidence 334455667777 45666556655 588899998643211 1111122222111100 001112344555
Q ss_pred CeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceee--eeEeeccccCCeeEEEecC--------CCCeeEEEEecCCCCE
Q 001248 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR--QHLEIDAHVGGVNDIAFSH--------PNKQLCVITCGDDKTI 491 (1114)
Q Consensus 422 ~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~--~~~~l~~h~~~V~~v~~s~--------d~~~~~l~s~~~d~~i 491 (1114)
.+....+++++.+||+++.|++|+|||+.+++... ....+.+|.+.|++++|+| |++ +|+||+.|++|
T Consensus 91 ~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~D~tv 168 (393)
T 4gq1_A 91 DGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGDDCTL 168 (393)
T ss_dssp ------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEETTSEE
T ss_pred CcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEECCCeE
Confidence 66666777788999999999999999999886543 2335789999999999998 777 89999999999
Q ss_pred EEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEee
Q 001248 492 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG 571 (1114)
Q Consensus 492 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~ 571 (1114)
+|||+.++.++..+.+|...|.+++|+|.. ..+|++++.|++|++||+++.........+.......
T Consensus 169 ~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~------------ 235 (393)
T 4gq1_A 169 IIWRLTDEGPILAGYPLSSPGISVQFRPSN-PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPW------------ 235 (393)
T ss_dssp EEEEEETTEEEEEEEECSSCEEEEEEETTE-EEEEEEEETTSEEEEEETTCCC----------CSCCC------------
T ss_pred EEEECCCCceeeeecCCCCCcEEEEECCCC-CceEEecCCCCEEEEEECCCCcccccccccCCcccce------------
Confidence 999999998888888899999999997643 2589999999999999998765544332221111000
Q ss_pred ecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEc-CCCCEEEEEeCCCcEEEEEccCC
Q 001248 572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 572 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
.++...... .......++...+.++.|+ +|++.+++++.|+++++||+..+
T Consensus 236 -----------------~~s~~~~~~-----------~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~ 287 (393)
T 4gq1_A 236 -----------------LLTLNTLPL-----------VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN 287 (393)
T ss_dssp -----------------SEEEESGGG-----------C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---
T ss_pred -----------------EEecccccc-----------eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccC
Confidence 011110000 0011111234568899987 79999999999999999998776
Q ss_pred ccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEE
Q 001248 651 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 730 (1114)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~ 730 (1114)
.....+..
T Consensus 288 -~~~~~l~~----------------------------------------------------------------------- 295 (393)
T 4gq1_A 288 -NDYNEISD----------------------------------------------------------------------- 295 (393)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -CCCceEee-----------------------------------------------------------------------
Confidence 22222211
Q ss_pred eccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccc
Q 001248 731 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 810 (1114)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~ 810 (1114)
+...+..+.+.++++.+..
T Consensus 296 -------------------~~~~~~~~~~~~~~~~~~~------------------------------------------ 314 (393)
T 4gq1_A 296 -------------------STMKLGPKNLLPNVQGISL------------------------------------------ 314 (393)
T ss_dssp ---------------------------CCSCSEEEECS------------------------------------------
T ss_pred -------------------ecCccccEEEccccccccc------------------------------------------
Confidence 2222333333343321110
Q ss_pred cCCCCCCCCCccEEEEee-CCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 001248 811 DVTDSNPEEAVPCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 888 (1114)
Q Consensus 811 ~~~~~~~~~~v~~v~~s~-d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd 888 (1114)
+...+..+.+.+ ++.++++|+ ||+|++||+.+++....+..|...|.+++|+| ||++||+++++| +.+|.
T Consensus 315 ------~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafsp-dG~~LA~as~~G-v~lvr 386 (393)
T 4gq1_A 315 ------FPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQ-DGSHLAIATEGS-VLLTR 386 (393)
T ss_dssp ------SCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECT-TSSEEEEEESSE-EEEEE
T ss_pred ------cCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcC-CCCEEEEEeCCC-eEEEE
Confidence 111122222223 444666777 89999999999998888888999999999999 999999998776 66665
Q ss_pred cc
Q 001248 889 VR 890 (1114)
Q Consensus 889 ~~ 890 (1114)
+.
T Consensus 387 L~ 388 (393)
T 4gq1_A 387 LM 388 (393)
T ss_dssp EG
T ss_pred Ee
Confidence 43
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-26 Score=258.04 Aligned_cols=236 Identities=14% Similarity=0.130 Sum_probs=178.3
Q ss_pred ccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCe
Q 001248 355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 434 (1114)
Q Consensus 355 ~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 434 (1114)
-.|.+.|++++|||||++ |++|+.+| ++|||+.+++..... +...+..+++++++++
T Consensus 16 ~~h~~~V~~v~fs~dg~~-la~g~~~~-~~iw~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~ 72 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSC-LILSTLKS-FEIYNVHPVAHIMSQ---------------------EMRHLSKVRMLHRTNY 72 (355)
T ss_dssp ---CCCCCEEEECTTSSE-EEEECSSE-EEEEEETTEEEEEEE---------------------ECSCCCEEEECTTSSE
T ss_pred ccCCCceEEEEECCCCCE-EEEEcCCE-EEEEecCCcceeeee---------------------ecCCeEEEEEcCCCCE
Confidence 349999999999999995 88888665 789999987665421 1125888999999998
Q ss_pred EE-EEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCC-cceeEeeccccCE
Q 001248 435 FG-VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPV 512 (1114)
Q Consensus 435 la-s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v 512 (1114)
++ +++.|++|+|||+.+++.+. .+. |...|.+++|+++.. +.+ .|+.|++||+.++ +.+..+.. +.
T Consensus 73 ~~~~~~~d~~v~iWd~~~~~~~~---~~~-~~~~v~~v~~~~~~~----~~~-~~~~i~i~d~~~~~~~~~~~~~---~~ 140 (355)
T 3vu4_A 73 VAFVTGVKEVVHIWDDVKKQDVS---RIK-VDAPVKDLFLSREFI----VVS-YGDVISVFKFGNPWKRITDDIR---FG 140 (355)
T ss_dssp EEEECSSTTEEEEEETTTTEEEE---EEE-CSSCEEEEEECSSEE----EEE-ETTEEEEEESSTTCCBSSCCEE---EE
T ss_pred EEEEECCccEEEEEECCCCcEEE---EEE-CCCceEEEEEcCCEE----EEE-EcCEEEEEECCCCceeeEEecc---CC
Confidence 85 56778999999999998776 443 667999999998642 333 3789999999998 77777765 33
Q ss_pred EEEeeccCCCceEEEE--EecCCeEEEEEcCCCCC----------------eeeecCCCCeeEEEEEecCCCeEEeeecc
Q 001248 513 YSVCPHHKENIQFIFS--TALDGKIKAWLYDNLGS----------------RVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1114)
Q Consensus 513 ~~~~~~~~~~~~~l~s--~~~d~~i~~wd~~~~~~----------------~~~~~~~~~~v~~~~~s~~g~~~~~~~~~ 574 (1114)
..+++++ .+++. |+.||.|++||+.+... ...+..|..
T Consensus 141 ~~~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~-------------------- 196 (355)
T 3vu4_A 141 GVCEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTN-------------------- 196 (355)
T ss_dssp EEEEEET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSS--------------------
T ss_pred ceEEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCC--------------------
Confidence 3344444 34554 68899999999987541 333444444
Q ss_pred cceeEEEecCCCCEEEEEeCCCe-EEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 575 RSLGVVQFDTTKNRFLAAGDDFS-IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 575 ~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
.+.+++|+|++++|++++.|++ |++||+.+++.+..+....+...|.+++|+|+|++|++++.|++|++||+..+
T Consensus 197 -~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 197 -PIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp -CEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred -ceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 4555555555568999999998 99999999999999873223458999999999999999999999999999765
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-26 Score=267.87 Aligned_cols=296 Identities=13% Similarity=0.112 Sum_probs=226.1
Q ss_pred CCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeE--eeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCC
Q 001248 421 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL--EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 498 (1114)
Q Consensus 421 ~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~--~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~ 498 (1114)
..+.+++|+|+++++++++.++.|++||+.+++...... .+.+|...|.+++|++++. ++++++.|+.|++||+.+
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~s~~~d~~v~~~d~~~ 200 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNE--LWVSQMQANAVHVFDLKT 200 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTE--EEEEEGGGTEEEEEETTT
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCE--EEEEECCCCEEEEEECCC
Confidence 356799999988888888889999999999988664221 3458999999999999988 799999999999999999
Q ss_pred CcceeEeeccccCEEEEeeccCCCceEE-EEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccce
Q 001248 499 GAKQYIFEGHEAPVYSVCPHHKENIQFI-FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 577 (1114)
Q Consensus 499 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v 577 (1114)
++.+..+..|...+.+++|+++ +..+ ++++.|+.|++||+++.+....+.. ...+..++++|+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~------------- 264 (433)
T 3bws_A 201 LAYKATVDLTGKWSKILLYDPI--RDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLSKD------------- 264 (433)
T ss_dssp CCEEEEEECSSSSEEEEEEETT--TTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEECTT-------------
T ss_pred ceEEEEEcCCCCCeeEEEEcCC--CCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEcCC-------------
Confidence 9999999999999999998754 3556 5555899999999987655444333 223445555544
Q ss_pred eEEEecCCCCEEEEEe--------CCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEE-EEEeCCCcEEEEEcc
Q 001248 578 GVVQFDTTKNRFLAAG--------DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL-AVSTNDNGIKILATS 648 (1114)
Q Consensus 578 ~~~~~~~~~~~l~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l-~~~~~dg~i~iwd~~ 648 (1114)
++++++++ .|+.|++||+.+++.+..+.... .+.+++|+|+++.+ ++++.++.|++||+.
T Consensus 265 --------g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~ 333 (433)
T 3bws_A 265 --------GKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG---NKRHIVSGNTENKIYVSDMCCSKIEVYDLK 333 (433)
T ss_dssp --------SSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE---CEEEEEECSSTTEEEEEETTTTEEEEEETT
T ss_pred --------CCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC---CcceEEECCCCCEEEEEecCCCEEEEEECC
Confidence 44677766 58999999999998877764332 47889999999755 566889999999987
Q ss_pred CCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeE
Q 001248 649 DGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKV 728 (1114)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i 728 (1114)
++ +....+.
T Consensus 334 ~~-~~~~~~~---------------------------------------------------------------------- 342 (433)
T 3bws_A 334 EK-KVQKSIP---------------------------------------------------------------------- 342 (433)
T ss_dssp TT-EEEEEEE----------------------------------------------------------------------
T ss_pred CC-cEEEEec----------------------------------------------------------------------
Confidence 66 2222110
Q ss_pred EEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccc
Q 001248 729 WKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM 808 (1114)
Q Consensus 729 w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~ 808 (1114)
+...+.+++|+|+++.+++++.+..
T Consensus 343 ---------------------~~~~~~~~~~s~dg~~l~~~~~~~~---------------------------------- 367 (433)
T 3bws_A 343 ---------------------VFDKPNTIALSPDGKYLYVSCRGPN---------------------------------- 367 (433)
T ss_dssp ---------------------CSSSEEEEEECTTSSEEEEEECCCC----------------------------------
T ss_pred ---------------------CCCCCCeEEEcCCCCEEEEEecCCC----------------------------------
Confidence 2345778999999987777665410
Q ss_pred cccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeC-CCcEEE
Q 001248 809 TNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-DSSIQI 886 (1114)
Q Consensus 809 ~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~-dg~v~i 886 (1114)
. + +..++++++ ||.|++||+.+++.+..+.. ...+.+++|+| ++++|++++. |+.|++
T Consensus 368 --------~---~-------~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~d~~i~v 427 (433)
T 3bws_A 368 --------H---P-------TEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSP-DNRYLVISDFLDHQIRV 427 (433)
T ss_dssp --------C---T-------TTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECT-TSCEEEEEETTTTEEEE
T ss_pred --------c---c-------ccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcC-CCCEEEEEECCCCeEEE
Confidence 0 0 223445556 89999999999988888775 45799999999 8888887764 999999
Q ss_pred EEccc
Q 001248 887 YNVRV 891 (1114)
Q Consensus 887 wd~~~ 891 (1114)
|++..
T Consensus 428 ~~~~~ 432 (433)
T 3bws_A 428 YRRDG 432 (433)
T ss_dssp EEETT
T ss_pred EEecC
Confidence 99863
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-27 Score=292.70 Aligned_cols=253 Identities=12% Similarity=0.069 Sum_probs=208.9
Q ss_pred CCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcC--CCccccccCCCCCCeEEEEEecCC--CcEEEEEeCCCcEEEEEcc
Q 001248 816 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMM--TFKTMATFMPPPPAATFLAFHPQD--NNIIAIGMDDSSIQIYNVR 890 (1114)
Q Consensus 816 ~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~--~~~~~~~~~~~~~~i~~l~~sp~d--~~~la~g~~dg~v~iwd~~ 890 (1114)
+|.+.|++++|+|++++|++|+ ||.|++||+. ++.....+.+|...|++++|+| + +++|++|+.||.|++||+.
T Consensus 7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~~~l~s~s~Dg~I~vwd~~ 85 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLIWKEE 85 (753)
T ss_dssp -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECC-TTSCSEEEEEETTSCEEEEEEE
T ss_pred cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecC-CCCCCEEEEEeCCCeEEEEECC
Confidence 4999999999999999999998 9999999998 5677788999999999999998 6 8999999999999999999
Q ss_pred cce--EEEeecccccCeeEEEEcCC--CCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEcc----
Q 001248 891 VDE--VKSKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ---- 962 (1114)
Q Consensus 891 ~~~--~~~~l~~h~~~V~~l~~s~d--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fsp---- 962 (1114)
+++ .+..+.+|...|++++|+|+ +++|++|+.||+|++||+.++...... ...+|. ..|.+++|+|
T Consensus 86 ~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~---~~~~~~---~~v~~l~~~p~~~~ 159 (753)
T 3jro_A 86 NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI---IIDAHA---IGVNSASWAPATIE 159 (753)
T ss_dssp TTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCE---EEECCS---SCEEEEEECCCC--
T ss_pred CCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCccee---EeecCC---CceEEEEecCcccc
Confidence 986 77888999999999999999 999999999999999999886432222 222333 4799999999
Q ss_pred ---------CCcEEEE-EeCCeEEEEEcCCCceeee--eecCCCCcCeeEEEECCC---CCEEEEEEcCCeEEEEEcCCC
Q 001248 963 ---------DQIHFLV-VHETQLAIFETTKLECVKQ--WVPRESSAPITHATFSCD---SQLVYACFLDATVCVFSAANL 1027 (1114)
Q Consensus 963 ---------dg~~l~~-~~d~~i~iwd~~~~~~~~~--~~~~~h~~~v~~l~~s~d---g~~l~s~s~Dg~I~vwd~~~~ 1027 (1114)
++.++++ +.|+.|++||+.++..... ....+|...|++++|+|+ +++|++++.||.|++||+.++
T Consensus 160 ~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~ 239 (753)
T 3jro_A 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 239 (753)
T ss_dssp -------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred cccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCC
Confidence 5888888 5899999999988743211 123489999999999999 899999999999999999987
Q ss_pred eeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1028 KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1028 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
+........ ...+| ...+. +++|+| ++++|++|+.||.|++|++.++.
T Consensus 240 ~~~~~~~~~--~~~~~-~~~v~--~l~~sp-dg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 240 QGPWKKTLL--KEEKF-PDVLW--RASWSL-SGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp SSCCBCCBS--SSSCC-SSCCC--CEEECT-TTCCEEEECSSSCEECCBCCSSS
T ss_pred CCcceeEEe--ccCCC-CCceE--EEEEcC-CCCEEEEEcCCCEEEEEecCCCC
Confidence 532221111 11122 22254 899999 68999999999999999998754
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.95 E-value=4.8e-26 Score=263.02 Aligned_cols=212 Identities=19% Similarity=0.277 Sum_probs=172.5
Q ss_pred cccCCCCCeeEEEEcCC-CCeEEEEeCCCeEEEEEccCC-------ceeeeeEeeccccCCeeEEEecCCCCeeEEEEec
Q 001248 415 LVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHGG-------DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG 486 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spd-g~~las~~~dg~i~iwd~~~~-------~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~ 486 (1114)
....|.+.|++++|+|+ +.+||+++.||.|+|||+.+. ........+.+|...|.+++|+|++.. +|++|+
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s~~ 201 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLLSAS 201 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EEEEEC
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eEEEEe
Confidence 45689999999999997 789999999999999999861 112233478899999999999999886 689999
Q ss_pred CCCCEEEEeCCCCcc-------eeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCC---CCeeeecCCCCee
Q 001248 487 DDKTIKVWDATNGAK-------QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL---GSRVDYEAPGRWC 556 (1114)
Q Consensus 487 ~d~~i~iwd~~~~~~-------~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~~~~~v 556 (1114)
.||+|++||+.++.. ...+.+|...|.+++|++.. +.++++++.|+.|++||+++. .....+..+...|
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~-~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 280 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLH-ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV 280 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCC-CCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence 999999999987432 45677899999999998743 479999999999999999976 3444555565556
Q ss_pred EEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCC-cceEEEeccCCCCCCcCeEEEcCCCC-EEE
Q 001248 557 TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNKDGC-LLA 634 (1114)
Q Consensus 557 ~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~ 634 (1114)
.+++|+|++. ..+++++.||.|++||+++ +..+..+..| ...|.+++|+|++. +|+
T Consensus 281 ~~i~~~p~~~--------------------~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h--~~~v~~i~~sp~~~~~l~ 338 (430)
T 2xyi_A 281 NCLSFNPYSE--------------------FILATGSADKTVALWDLRNLKLKLHSFESH--KDEIFQVQWSPHNETILA 338 (430)
T ss_dssp EEEEECSSCT--------------------TEEEEEETTSEEEEEETTCTTSCSEEEECC--SSCEEEEEECSSCTTEEE
T ss_pred EEEEeCCCCC--------------------CEEEEEeCCCeEEEEeCCCCCCCeEEeecC--CCCEEEEEECCCCCCEEE
Confidence 6666555543 2588999999999999988 5667777765 44799999999984 799
Q ss_pred EEeCCCcEEEEEccCC
Q 001248 635 VSTNDNGIKILATSDG 650 (1114)
Q Consensus 635 ~~~~dg~i~iwd~~~~ 650 (1114)
+++.||.|++||+...
T Consensus 339 s~~~d~~i~iwd~~~~ 354 (430)
T 2xyi_A 339 SSGTDRRLHVWDLSKI 354 (430)
T ss_dssp EEETTSCCEEEEGGGT
T ss_pred EEeCCCcEEEEeCCCC
Confidence 9999999999998764
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=259.23 Aligned_cols=280 Identities=8% Similarity=0.062 Sum_probs=214.8
Q ss_pred EecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecC
Q 001248 472 AFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA 551 (1114)
Q Consensus 472 ~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 551 (1114)
.+.+++. ++++|+.||+|++||+.+++.+..+. ...|.++.+++. +++++.|++|++|+..
T Consensus 43 ~~~~d~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~---------- 103 (343)
T 3lrv_A 43 SMYYDKW--VCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-----IISRGPCNRLLLLYPG---------- 103 (343)
T ss_dssp SSSEEEE--EEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-----EEEECSTTEEEEEETT----------
T ss_pred hhcCCCC--EEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-----eEEecCCCeEEEEEcc----------
Confidence 3445666 79999999999999999999988887 466777776553 9999999999999764
Q ss_pred CCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcC--C
Q 001248 552 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK--D 629 (1114)
Q Consensus 552 ~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~--d 629 (1114)
+.+.+|+..+++.+..+... +...|.+++|+| +
T Consensus 104 --------------------------------------------~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~ 138 (343)
T 3lrv_A 104 --------------------------------------------NQITILDSKTNKVLREIEVD-SANEIIYMYGHNEVN 138 (343)
T ss_dssp --------------------------------------------TEEEEEETTTCCEEEEEECC-CSSCEEEEECCC---
T ss_pred --------------------------------------------CceEEeecCCcceeEEeecC-CCCCEEEEEcCCCCC
Confidence 35668999888877766532 234799999999 9
Q ss_pred CCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCcc
Q 001248 630 GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVR 709 (1114)
Q Consensus 630 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (1114)
++++++++.||+|++||+.++.. ......
T Consensus 139 ~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~-------------------------------------------------- 167 (343)
T 3lrv_A 139 TEYFIWADNRGTIGFQSYEDDSQ-YIVHSA-------------------------------------------------- 167 (343)
T ss_dssp CCEEEEEETTCCEEEEESSSSCE-EEEECC--------------------------------------------------
T ss_pred CCEEEEEeCCCcEEEEECCCCcE-EEEEec--------------------------------------------------
Confidence 99999999999999999987732 221100
Q ss_pred ccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCC
Q 001248 710 SLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSG 789 (1114)
Q Consensus 710 ~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 789 (1114)
.+...+.+++|+|++..+++++.||.|++||+...
T Consensus 168 ---------------------------------------~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~------ 202 (343)
T 3lrv_A 168 ---------------------------------------KSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSP------ 202 (343)
T ss_dssp ---------------------------------------CSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCT------
T ss_pred ---------------------------------------CCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC------
Confidence 13446889999999999999999999999987632
Q ss_pred CccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCC---CCCCe--EE
Q 001248 790 KATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMP---PPPAA--TF 864 (1114)
Q Consensus 790 ~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~---~~~~i--~~ 864 (1114)
......+.. +|...|.+++|+|++.+|+++++++|++||+.+++.+..+.. |...+ .+
T Consensus 203 ----------------~~~~~~~~~-~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 265 (343)
T 3lrv_A 203 ----------------DQASSRFPV-DEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVT 265 (343)
T ss_dssp ----------------TSCCEECCC-CTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEE
T ss_pred ----------------CCCccEEec-cCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceE
Confidence 222001111 388999999999999999999977999999999887766554 33334 36
Q ss_pred EEEecCCCcEEEEEeC-CCcEEEEEcccceEEEeecccccCeeEEEEcC---CCCEEEEEeCCCcEEEEeCCC
Q 001248 865 LAFHPQDNNIIAIGMD-DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH---ALNVLVSSGADSQLCVWSSDG 933 (1114)
Q Consensus 865 l~~sp~d~~~la~g~~-dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~---d~~~l~s~s~D~~v~iwd~~~ 933 (1114)
++|+| ++++|++++. |+.|++|++.+....... .++..++|++ +.+.|++++.|+.+.++-...
T Consensus 266 ~~~~~-~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 266 YDIDD-SGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp EEECT-TSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred EEECC-CCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEecC
Confidence 99999 8999999988 999999999765433222 5678889998 889999999999999885443
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-25 Score=260.64 Aligned_cols=334 Identities=13% Similarity=0.148 Sum_probs=240.7
Q ss_pred EEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCccccccccc-CCCCCeeEEEEcCCCCeEEEEeCCCe
Q 001248 365 DFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVK-DPGVSVNRVIWSPDGSLFGVAYSRHI 443 (1114)
Q Consensus 365 ~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~h~~~V~~l~~spdg~~las~~~dg~ 443 (1114)
+|+|+++ ++++++.|++|.+||..+++.+.. +. +|. +.+++|||||++|++++.|++
T Consensus 144 ~~~p~~~-~~vs~~~d~~V~v~D~~t~~~~~~-------------------i~~g~~--~~~v~~spdg~~l~v~~~d~~ 201 (543)
T 1nir_A 144 DLDLPNL-FSVTLRDAGQIALVDGDSKKIVKV-------------------IDTGYA--VHISRMSASGRYLLVIGRDAR 201 (543)
T ss_dssp CCCGGGE-EEEEEGGGTEEEEEETTTCCEEEE-------------------EECSTT--EEEEEECTTSCEEEEEETTSE
T ss_pred ccCCCCE-EEEEEcCCCeEEEEECCCceEEEE-------------------EecCcc--cceEEECCCCCEEEEECCCCe
Confidence 3889887 689999999999999999988763 33 443 899999999999999999999
Q ss_pred EEEEEc--cCCceeeeeEeeccccCCeeEEEecC----CCCeeEEEEec-CCCCEEEEeCCCCcceeEeecc--------
Q 001248 444 VQIYSY--HGGDEVRQHLEIDAHVGGVNDIAFSH----PNKQLCVITCG-DDKTIKVWDATNGAKQYIFEGH-------- 508 (1114)
Q Consensus 444 i~iwd~--~~~~~~~~~~~l~~h~~~V~~v~~s~----d~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~h-------- 508 (1114)
|.+||+ .+++.+. ++. +...+..++|+| ||+ ++++++ .+++|.+||..+++++.++..+
T Consensus 202 V~v~D~~~~t~~~~~---~i~-~g~~p~~va~sp~~~~dg~--~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~ 275 (543)
T 1nir_A 202 IDMIDLWAKEPTKVA---EIK-IGIEARSVESSKFKGYEDR--YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQT 275 (543)
T ss_dssp EEEEETTSSSCEEEE---EEE-CCSEEEEEEECCSTTCTTT--EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCC
T ss_pred EEEEECcCCCCcEEE---EEe-cCCCcceEEeCCCcCCCCC--EEEEEEccCCeEEEEeccccccceeecccCcccCccc
Confidence 999999 7877655 444 345689999999 999 566665 5899999999999999888652
Q ss_pred --c-cCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCee--eecCCCCeeEEEEEecCCCeEEeeecccceeEEEec
Q 001248 509 --E-APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV--DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 583 (1114)
Q Consensus 509 --~-~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~--~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~ 583 (1114)
. ..+.++.+++.. ..++++...++.|.+||+.+.+... .+ .+...+.. +.|+
T Consensus 276 ~~~~~~v~~i~~s~~~-~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~---------------------~~~s 332 (543)
T 1nir_A 276 YHPEPRVAAIIASHEH-PEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHD---------------------GGWD 332 (543)
T ss_dssp EESCCCEEEEEECSSS-SEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCC---------------------EEEC
T ss_pred cccCCceEEEEECCCC-CEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccC---------------------ceEC
Confidence 2 268888876643 3678888889999999998755432 11 12222333 4555
Q ss_pred CCCCEEEEEe-CCCeEEEEECCCcceEEEeccCCCCCCcCeEE-EcCC-CCEEEEEe-CCCcEEEEEccCCccceeeccc
Q 001248 584 TTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIR-FNKD-GCLLAVST-NDNGIKILATSDGIRLLRTFEN 659 (1114)
Q Consensus 584 ~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~-~s~d-~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~ 659 (1114)
|+++++++++ .+++|.+||..+++++..+........-..+. ++|+ +.+++++. .|++|.+||..+....
T Consensus 333 pdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~------ 406 (543)
T 1nir_A 333 SSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHP------ 406 (543)
T ss_dssp TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCT------
T ss_pred CCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCc------
Confidence 5556666554 68999999999999998887422111112233 4676 66666665 5799999998663100
Q ss_pred cccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCcc
Q 001248 660 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ 739 (1114)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~ 739 (1114)
.
T Consensus 407 --~----------------------------------------------------------------------------- 407 (543)
T 1nir_A 407 --Q----------------------------------------------------------------------------- 407 (543)
T ss_dssp --T-----------------------------------------------------------------------------
T ss_pred --h-----------------------------------------------------------------------------
Confidence 0
Q ss_pred ccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCC
Q 001248 740 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE 819 (1114)
Q Consensus 740 ~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~ 819 (1114)
+... .+.. +. .|..
T Consensus 408 ----------~~~~--------------------~v~~----------------------------------l~--~~g~ 421 (543)
T 1nir_A 408 ----------YAWK--------------------KVAE----------------------------------LQ--GQGG 421 (543)
T ss_dssp ----------TBTS--------------------EEEE----------------------------------EE--CSCS
T ss_pred ----------hcCe--------------------EEEE----------------------------------EE--cCCC
Confidence 0000 0000 00 0334
Q ss_pred CccEEEEeeCCCEEEEEe--------CCeEEEEEcCCCccc-ccc--------CCCCCCeEEEEEecCCCcEEEEEe---
Q 001248 820 AVPCFALSKNDSYVMSAS--------GGKISLFNMMTFKTM-ATF--------MPPPPAATFLAFHPQDNNIIAIGM--- 879 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~~~~--------dg~i~iwd~~~~~~~-~~~--------~~~~~~i~~l~~sp~d~~~la~g~--- 879 (1114)
.+..++++||+++|.+++ +++|.|||+.+++.. ..+ ..+...+..++|+| +|+.|+++.
T Consensus 422 ~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~g~~~~~s~~~~ 500 (543)
T 1nir_A 422 GSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNG 500 (543)
T ss_dssp CCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECS-SSSEEEEEEECC
T ss_pred CceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCC-CCCEEEEEeecC
Confidence 456677888888888875 568999999988876 332 34567899999999 888887653
Q ss_pred --CCCcEEEEEcccceEEEeeccc
Q 001248 880 --DDSSIQIYNVRVDEVKSKLKGH 901 (1114)
Q Consensus 880 --~dg~v~iwd~~~~~~~~~l~~h 901 (1114)
.|+.|.|||..+++++..++.+
T Consensus 501 ~~~~~~i~v~D~~t~~~~~~i~~~ 524 (543)
T 1nir_A 501 KNDSSALVVVDDKTLKLKAVVKDP 524 (543)
T ss_dssp TTSCCEEEEEETTTTEEEEEECCT
T ss_pred CCCCCeEEEEECCCceEEEeecCC
Confidence 4799999999999999988864
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.7e-25 Score=258.56 Aligned_cols=338 Identities=11% Similarity=0.076 Sum_probs=243.4
Q ss_pred EecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEc--CCCCCeeee
Q 001248 472 AFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY--DNLGSRVDY 549 (1114)
Q Consensus 472 ~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~--~~~~~~~~~ 549 (1114)
+|+|++. ++++++.|++|.+||..+++++.++..+.. +..++|+ ++|++|++++.|+.|.+||+ .+.+....+
T Consensus 144 ~~~p~~~--~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~s--pdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i 218 (543)
T 1nir_A 144 DLDLPNL--FSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMS--ASGRYLLVIGRDARIDMIDLWAKEPTKVAEI 218 (543)
T ss_dssp CCCGGGE--EEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEEC--TTSCEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred ccCCCCE--EEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEEC--CCCCEEEEECCCCeEEEEECcCCCCcEEEEE
Confidence 3788886 789999999999999999999999984333 7888865 56689999999999999999 555444444
Q ss_pred cCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEe-CCCeEEEEECCCcceEEEeccCCC---------CC
Q 001248 550 EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGG---------LP 619 (1114)
Q Consensus 550 ~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~---------~~ 619 (1114)
. ....+..++|+|.- .++++++++++ .+++|.+||..+++++..+...+. ..
T Consensus 219 ~-~g~~p~~va~sp~~-----------------~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~ 280 (543)
T 1nir_A 219 K-IGIEARSVESSKFK-----------------GYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEP 280 (543)
T ss_dssp E-CCSEEEEEEECCST-----------------TCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCC
T ss_pred e-cCCCcceEEeCCCc-----------------CCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCC
Confidence 3 23334455555400 00445777777 589999999999999988865321 12
Q ss_pred CcCeEEEcCCCCE-EEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccc
Q 001248 620 ASPRIRFNKDGCL-LAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASM 698 (1114)
Q Consensus 620 ~v~~~~~s~d~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (1114)
.+..+.++|++.. +++...++.|.+||..+... +.
T Consensus 281 ~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~-l~------------------------------------------- 316 (543)
T 1nir_A 281 RVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDN-LT------------------------------------------- 316 (543)
T ss_dssp CEEEEEECSSSSEEEEEETTTTEEEEEECTTSSS-CE-------------------------------------------
T ss_pred ceEEEEECCCCCEEEEEECCCCeEEEEEecCCCc-ce-------------------------------------------
Confidence 4677888886654 44556677888887655410 00
Q ss_pred cccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEE
Q 001248 699 VSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLW 778 (1114)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw 778 (1114)
+..+
T Consensus 317 -------------------------------------------------------~~~i--------------------- 320 (543)
T 1nir_A 317 -------------------------------------------------------VTSI--------------------- 320 (543)
T ss_dssp -------------------------------------------------------EEEE---------------------
T ss_pred -------------------------------------------------------eEEe---------------------
Confidence 0000
Q ss_pred eecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe--CCeEEEEEcCCCccccccC
Q 001248 779 KWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFM 856 (1114)
Q Consensus 779 ~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~ 856 (1114)
.+...+..++|+|||+++++++ +++|.+||+.+++++..+.
T Consensus 321 -------------------------------------~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~ 363 (543)
T 1nir_A 321 -------------------------------------GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD 363 (543)
T ss_dssp -------------------------------------ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred -------------------------------------ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeec
Confidence 0122345678899999876654 7899999999998887765
Q ss_pred C----CCCCeEEEEEecCCCcEEEEEe-CCCcEEEEEccc-------ceEEEeecccccCeeEEEEcCCCCEEEEEe---
Q 001248 857 P----PPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRV-------DEVKSKLKGHSKRITGLAFSHALNVLVSSG--- 921 (1114)
Q Consensus 857 ~----~~~~i~~l~~sp~d~~~la~g~-~dg~v~iwd~~~-------~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s--- 921 (1114)
. |......+ ++|+++.+++++. .|++|.+||+.+ ++++.++.+|.+.+..|+|+||+++|++++
T Consensus 364 ~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~ 442 (543)
T 1nir_A 364 VGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFN 442 (543)
T ss_dssp CSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTC
T ss_pred cCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCC
Confidence 4 54434333 5784577888875 689999999998 899999999999899999999999999987
Q ss_pred ----CCCcEEEEeCCCCccc-cccccccCCCCCCCCCCceEEEEccCCcEEEEE------eCCeEEEEEcCCCceeeeee
Q 001248 922 ----ADSQLCVWSSDGWEKQ-KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV------HETQLAIFETTKLECVKQWV 990 (1114)
Q Consensus 922 ----~D~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~------~d~~i~iwd~~~~~~~~~~~ 990 (1114)
.+++|.+||+.+.+.. ....+....+.......+..+.|+|||+.|+++ .++.|.|||.++++++..+.
T Consensus 443 ~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 443 PDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp SSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 2789999999987754 111111100001112368899999999999974 26899999999999998876
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-22 Score=253.51 Aligned_cols=259 Identities=14% Similarity=0.106 Sum_probs=174.5
Q ss_pred CCCceEEEEcCCCCeEEEEEec-CC-----cEEEEEcCCcceeEEeeeeeec-----cCCCCcccccccccCCCCCeeEE
Q 001248 358 GSSPMSMDFHPVQQTLLLVGTN-VG-----DIGLWEVGSRERLVLRNFKVWD-----LGACSMPLQAALVKDPGVSVNRV 426 (1114)
Q Consensus 358 ~~~v~~v~~spdg~~ll~tg~~-dg-----~v~iwd~~~~~~~~~~~~~~~d-----~~~~~~~~~~~~~~~h~~~V~~l 426 (1114)
...|++++|||||++ |++++. |+ .|++||+.+++........... +...........-......|.++
T Consensus 36 ~~~~~~~~~SpdG~~-la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSR-VTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSE-EEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCE-EEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 457899999999997 777776 88 8999999998765421110000 00000000000000001348899
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEccCCc--eeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeE
Q 001248 427 IWSPDGSLFGVAYSRHIVQIYSYHGGD--EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 504 (1114)
Q Consensus 427 ~~spdg~~las~~~dg~i~iwd~~~~~--~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 504 (1114)
+|||||++|++++. +.|.+||+.++. ... .+..|...+.+++|||||+ .|+.++ ++.|++||+.+++....
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQMQL 187 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEEEC
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEEEe
Confidence 99999999999986 899999999872 233 4667888999999999999 566666 46899999998876655
Q ss_pred eeccccC----------------EEEEeeccCCCceEEEEEecCC---------------------------------eE
Q 001248 505 FEGHEAP----------------VYSVCPHHKENIQFIFSTALDG---------------------------------KI 535 (1114)
Q Consensus 505 ~~~h~~~----------------v~~~~~~~~~~~~~l~s~~~d~---------------------------------~i 535 (1114)
...+... +.+++|+ +||++|++++.|+ .|
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~S--pDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWA--PDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEEC--TTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEEC--CCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 4444332 3556765 5668888887765 67
Q ss_pred EEEEcCC-CCCeeeec--CCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEe-----CCCeEEEEECCCcc
Q 001248 536 KAWLYDN-LGSRVDYE--APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-----DDFSIKFWDMDSVQ 607 (1114)
Q Consensus 536 ~~wd~~~-~~~~~~~~--~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~dg~i~iwd~~~~~ 607 (1114)
.+||+.+ ++...... .+...+..++| ||| ++|++++ .+..|++||+.+++
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg---------------------~~l~~~~~~~~~~~~~i~~~d~~~g~ 323 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDP---------------------QHLSFQRQSRDQKKLDLVEVTLASNQ 323 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EET---------------------TEEEEEEEETTSSEEEEEEEETTTCC
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCC---------------------CEEEEEEecccCCeEEEEEEECCCCc
Confidence 7888876 55433221 13334455555 555 4566544 36789999999998
Q ss_pred eEEEeccCCCC--CCcCeEEEcCCCCEEEEEeCCCcEEEEEcc
Q 001248 608 LLTSIDADGGL--PASPRIRFNKDGCLLAVSTNDNGIKILATS 648 (1114)
Q Consensus 608 ~~~~~~~~~~~--~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~ 648 (1114)
....+..+... ..+..++|+|||+++++++.+|.++||.+.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 324 QRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRID 366 (741)
T ss_dssp EEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEEC
T ss_pred eEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEc
Confidence 87776544311 135689999999988888889888888654
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-23 Score=239.22 Aligned_cols=302 Identities=11% Similarity=0.085 Sum_probs=219.5
Q ss_pred cCCeeEEEecCCCCeeEEEEec----CCC----CEEEEeC--CCCcce--eEeeccccCEEEEeeccC------------
Q 001248 465 VGGVNDIAFSHPNKQLCVITCG----DDK----TIKVWDA--TNGAKQ--YIFEGHEAPVYSVCPHHK------------ 520 (1114)
Q Consensus 465 ~~~V~~v~~s~d~~~~~l~s~~----~d~----~i~iwd~--~~~~~~--~~~~~h~~~v~~~~~~~~------------ 520 (1114)
...+...+|++.|.. ++++|+ .|| +|++||+ .+++++ ..+.+|...+..+++.+.
T Consensus 62 ~~~~~~~~w~~~g~~-~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 62 AQEVQPAAWSALGID-AVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp GGGCCHHHHHTTTCC-EEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred ccCcCHHHHHhcCCC-EEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 346888899999887 676775 567 8999999 899887 458889888887776531
Q ss_pred CCceEEEEEecC------CeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeC
Q 001248 521 ENIQFIFSTALD------GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 594 (1114)
Q Consensus 521 ~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 594 (1114)
..+..++.++.+ +.|++||++. .....+..+...+.+++|+|+| +++++++.
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg---------------------~~la~~s~ 198 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDG---------------------SKLAYVTF 198 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTS---------------------SEEEEEEC
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCC---------------------CEEEEEEe
Confidence 113456665554 7999999974 3344444444555555555555 47888887
Q ss_pred CC---eEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEE-EEeCCCc--EEEEEccCCccceeeccccccccccCC
Q 001248 595 DF---SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA-VSTNDNG--IKILATSDGIRLLRTFENLAYDASRTS 668 (1114)
Q Consensus 595 dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~ 668 (1114)
++ .|++||+.+++... +..+ ...+.+++|+|||+.|+ +++.++. |++||+.++. . ..+.
T Consensus 199 ~~~~~~i~~~d~~tg~~~~-l~~~--~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~-~-~~l~---------- 263 (415)
T 2hqs_A 199 ESGRSALVIQTLANGAVRQ-VASF--PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-I-RQVT---------- 263 (415)
T ss_dssp TTSSCEEEEEETTTCCEEE-EECC--SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-E-EECC----------
T ss_pred cCCCcEEEEEECCCCcEEE-eecC--CCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC-E-EeCc----------
Confidence 75 99999999988764 3333 23688999999999888 5666655 8888887652 1 1111
Q ss_pred CCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCcc
Q 001248 669 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN 748 (1114)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~ 748 (1114)
T Consensus 264 -------------------------------------------------------------------------------- 263 (415)
T 2hqs_A 264 -------------------------------------------------------------------------------- 263 (415)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccceEEEEEccCcceeeeccc-Cc--eEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEE
Q 001248 749 LRATKISRLIFTNSGNAILALAS-NA--IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA 825 (1114)
Q Consensus 749 ~~~~~i~~l~~s~~~~~l~~~~~-dg--~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~ 825 (1114)
.+...+.+++|+|||+.|+.++. ++ .|++|++. ++.... +. .+...+.+++
T Consensus 264 ~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~----------------------~~~~~~--l~--~~~~~~~~~~ 317 (415)
T 2hqs_A 264 DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN----------------------GGAPQR--IT--WEGSQNQDAD 317 (415)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT----------------------SSCCEE--CC--CSSSEEEEEE
T ss_pred CCCCcccceEECCCCCEEEEEECCCCCcEEEEEECC----------------------CCCEEE--Ee--cCCCcccCeE
Confidence 14456789999999998888776 45 45555543 333221 11 1456788999
Q ss_pred EeeCCCEEEEEe-C---CeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCC---cEEEEEcccceEEEee
Q 001248 826 LSKNDSYVMSAS-G---GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS---SIQIYNVRVDEVKSKL 898 (1114)
Q Consensus 826 ~s~d~~~l~~~~-d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg---~v~iwd~~~~~~~~~l 898 (1114)
|+|||++|++++ + ..|++||+.+++.. .+..+. .+.+++|+| +|++|++++.++ .|++||+. ++....+
T Consensus 318 ~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l 393 (415)
T 2hqs_A 318 VSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTD-GRFKARL 393 (415)
T ss_dssp ECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECT-TSSEEEEEEEETTEEEEEEEETT-SCCEEEC
T ss_pred ECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcC-CCCEEEEEEcCCCccEEEEEECC-CCcEEEe
Confidence 999999999887 3 47999999987763 455454 899999999 899888888777 79999987 5557889
Q ss_pred cccccCeeEEEEcCCC
Q 001248 899 KGHSKRITGLAFSHAL 914 (1114)
Q Consensus 899 ~~h~~~V~~l~~s~d~ 914 (1114)
.+|.+.|.+++|+|.-
T Consensus 394 ~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 394 PATDGQVKFPAWSPYL 409 (415)
T ss_dssp CCSSSEEEEEEECCCC
T ss_pred eCCCCCCcCCcccccc
Confidence 9999999999999864
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.1e-23 Score=257.76 Aligned_cols=234 Identities=9% Similarity=0.068 Sum_probs=165.0
Q ss_pred CceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCC---CeeEEEEcCCCCeEE
Q 001248 360 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV---SVNRVIWSPDGSLFG 436 (1114)
Q Consensus 360 ~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~---~V~~l~~spdg~~la 436 (1114)
.+.+++|||||++ +++ +.||+|++||+.+++... ++.+|.. .|.+++|||||++||
T Consensus 18 ~~~~~~~spdg~~-~~~-~~dg~i~~~d~~~g~~~~-------------------~~~~~~~~~~~v~~~~~SpDg~~l~ 76 (723)
T 1xfd_A 18 HDPEAKWISDTEF-IYR-EQKGTVRLWNVETNTSTV-------------------LIEGKKIESLRAIRYEISPDREYAL 76 (723)
T ss_dssp CCCCCCBSSSSCB-CCC-CSSSCEEEBCGGGCCCEE-------------------EECTTTTTTTTCSEEEECTTSSEEE
T ss_pred cccccEEcCCCcE-EEE-eCCCCEEEEECCCCcEEE-------------------EeccccccccccceEEECCCCCEEE
Confidence 4678999999994 666 689999999999987654 2445554 499999999999999
Q ss_pred EEeCC---------CeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeec
Q 001248 437 VAYSR---------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG 507 (1114)
Q Consensus 437 s~~~d---------g~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 507 (1114)
+++.+ +.+.+||+.+++. ..+....+|...+.+++|||||+ .|+.++. +.|++||+.+++.......
T Consensus 77 ~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 77 FSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp EEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred EEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEecC
Confidence 99874 7788999999875 32323445666799999999999 4666664 7899999999887766655
Q ss_pred cccCE------------------EEEeeccCCCceEEEEEecC-CeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeE
Q 001248 508 HEAPV------------------YSVCPHHKENIQFIFSTALD-GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRT 568 (1114)
Q Consensus 508 h~~~v------------------~~~~~~~~~~~~~l~s~~~d-~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~ 568 (1114)
+...+ .+++|+ +||+.|++++.| +.+.+|++...... ....+..+.++++|.
T Consensus 153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~S--pDg~~la~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~G~-- 223 (723)
T 1xfd_A 153 GKEGVIYNGLSDWLYEEEILKTHIAHWWS--PDGTRLAYAAINDSRVPIMELPTYTGS-----IYPTVKPYHYPKAGS-- 223 (723)
T ss_dssp CBTTTEEEEECCHHHHHTTSSSSEEEEEC--TTSSEEEEEEEECTTSCEEEECCCSSS-----SSCCCEEEECCBTTS--
T ss_pred CCCCceECcccceeEEEEeccCcceEEEC--CCCCEEEEEEECCCccceEEeeccCCc-----CCCcceeccCCCCCC--
Confidence 44433 677875 456788877754 46777876532211 112244455555443
Q ss_pred EeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCC----CCCCcCeEEEcCCCCEEEEEeCC----C
Q 001248 569 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVSTND----N 640 (1114)
Q Consensus 569 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~s~d~~~l~~~~~d----g 640 (1114)
. ..+..|++||+.+++....+..+. +...+..++|+|||+++++.... .
T Consensus 224 -------------------~----~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~ 280 (723)
T 1xfd_A 224 -------------------E----NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVS 280 (723)
T ss_dssp -------------------C----CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEE
T ss_pred -------------------C----CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeE
Confidence 1 234589999999988656665431 12357789999999988766432 4
Q ss_pred cEEEEEccCC
Q 001248 641 GIKILATSDG 650 (1114)
Q Consensus 641 ~i~iwd~~~~ 650 (1114)
.|++||+.++
T Consensus 281 ~i~~~d~~~g 290 (723)
T 1xfd_A 281 ILTLCDATTG 290 (723)
T ss_dssp EEEEEETTTC
T ss_pred EEEEEeCCCC
Confidence 5677776555
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-22 Score=253.02 Aligned_cols=327 Identities=13% Similarity=0.050 Sum_probs=224.7
Q ss_pred CCCeeEEEEcCCCCeEEEEeC-CC-----eEEEEEccCCceeeeeEeecccc------------------------CCee
Q 001248 420 GVSVNRVIWSPDGSLFGVAYS-RH-----IVQIYSYHGGDEVRQHLEIDAHV------------------------GGVN 469 (1114)
Q Consensus 420 ~~~V~~l~~spdg~~las~~~-dg-----~i~iwd~~~~~~~~~~~~l~~h~------------------------~~V~ 469 (1114)
...|.+++|||||++|++++. |+ .|++||+.+++... .+..|. ..|.
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 112 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRL---LVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV 112 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEE---EECGGGTC--------------------CCEESC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeE---ccchhhcccccccccchhhhhhhhhhhccccCcc
Confidence 447999999999999999998 88 89999999987543 233332 2389
Q ss_pred EEEecCCCCeeEEEEecCCCCEEEEeCCCCc--ceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCee
Q 001248 470 DIAFSHPNKQLCVITCGDDKTIKVWDATNGA--KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 547 (1114)
Q Consensus 470 ~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 547 (1114)
+++|||||+ +|++++. +.|++||+.++. .+..+..|...+..++|++ ||++|++++ ++.|.+||+.++....
T Consensus 113 ~~~~SpDg~--~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SP--DG~~la~~~-~~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 113 DYQWSPDAQ--RLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSP--KGGFVSFIR-GRNLWVIDLASGRQMQ 186 (741)
T ss_dssp CCEECTTSS--EEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECT--TSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred eeEECCCCC--EEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCC--CCCEEEEEe-CCcEEEEecCCCCEEE
Confidence 999999999 5666665 899999999883 4566777888999999865 567888887 5699999998754433
Q ss_pred eecCCCCe----------------eEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCC---------------
Q 001248 548 DYEAPGRW----------------CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF--------------- 596 (1114)
Q Consensus 548 ~~~~~~~~----------------v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------------- 596 (1114)
....+... +..++|+|||+ +|++++.|+
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~---------------------~l~~~~~d~~~~~~~~~~~~~p~~ 245 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDS---------------------AIAYARIDESPVPVQKRYEVYADR 245 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSS---------------------CEEEEEEECTTSCEEEEEEECSSC
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCC---------------------EEEEEEEcCCCCceEecCCCCCCc
Confidence 32222221 24455555555 454444333
Q ss_pred ------------------eEEEEECCC-cceEEEeccCCCCCCcCeEEEcCCCCEEEEEeC-----CCcEEEEEccCCcc
Q 001248 597 ------------------SIKFWDMDS-VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN-----DNGIKILATSDGIR 652 (1114)
Q Consensus 597 ------------------~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~-----dg~i~iwd~~~~~~ 652 (1114)
.|++||+.+ ++.........+...+..++| |||+.|++++. +..|++||+.++.
T Consensus 246 ~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~- 323 (741)
T 2ecf_A 246 TDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ- 323 (741)
T ss_dssp EEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC-
T ss_pred ccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc-
Confidence 788999988 876554433223446789999 99999987754 4456777665541
Q ss_pred ceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEec
Q 001248 653 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT 732 (1114)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~ 732 (1114)
....+..+.
T Consensus 324 ~~~~~~~~~----------------------------------------------------------------------- 332 (741)
T 2ecf_A 324 QRVLAHETS----------------------------------------------------------------------- 332 (741)
T ss_dssp EEEEEEEEC-----------------------------------------------------------------------
T ss_pred eEEEEEcCC-----------------------------------------------------------------------
Confidence 111110000
Q ss_pred cCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccC
Q 001248 733 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 812 (1114)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~ 812 (1114)
++
T Consensus 333 ---------------------------------------~~--------------------------------------- 334 (741)
T 2ecf_A 333 ---------------------------------------PT--------------------------------------- 334 (741)
T ss_dssp ---------------------------------------SS---------------------------------------
T ss_pred ---------------------------------------CC---------------------------------------
Confidence 00
Q ss_pred CCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcC-CCccccccCCCCCCeEEE-EEecCCCcEE-EEEeCCC--cEEE
Q 001248 813 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMM-TFKTMATFMPPPPAATFL-AFHPQDNNII-AIGMDDS--SIQI 886 (1114)
Q Consensus 813 ~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~-~~~~~~~~~~~~~~i~~l-~~sp~d~~~l-a~g~~dg--~v~i 886 (1114)
.-..+.+++|+|||+++++++ +|.++||.+. ++. ...+..+...+..+ +|+| +++.| ++++.++ .++|
T Consensus 335 ----~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~-dg~~l~~~~~~~~~~~~~l 408 (741)
T 2ecf_A 335 ----WVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDE-KAGLAYFRAGIESARESQI 408 (741)
T ss_dssp ----CCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEET-TTTEEEEEECSSCTTCBEE
T ss_pred ----cCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeC-CCCEEEEEEeCCCCceEEE
Confidence 001234567888888777766 6766666654 344 66777777788887 5999 77655 5566665 8999
Q ss_pred EEccc-ceEEEeecccccCeeEEEEcCCCCEEEEEeCC----CcEEEEeCCCC
Q 001248 887 YNVRV-DEVKSKLKGHSKRITGLAFSHALNVLVSSGAD----SQLCVWSSDGW 934 (1114)
Q Consensus 887 wd~~~-~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D----~~v~iwd~~~~ 934 (1114)
|++.. ++....+.. ...+.+++|||||++|+....+ ..+.+|+..++
T Consensus 409 ~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 409 YAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp EEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred EEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 99875 555666765 6678899999999998876544 46889988654
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.91 E-value=5.5e-23 Score=235.14 Aligned_cols=242 Identities=10% Similarity=0.022 Sum_probs=177.4
Q ss_pred CCCceEEEEcCCCCeEEEEEe----cCC----cEEEEEc--CCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEE
Q 001248 358 GSSPMSMDFHPVQQTLLLVGT----NVG----DIGLWEV--GSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 427 (1114)
Q Consensus 358 ~~~v~~v~~spdg~~ll~tg~----~dg----~v~iwd~--~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 427 (1114)
...+....|++.|..++++|+ .+| +|+|||+ .+++.+... .+.+|...+..++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 124 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQN-----------------SYKVNKQWLRYAG 124 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEE-----------------EEEECGGGHHHHH
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeee-----------------EEEcChhHHHHHH
Confidence 357888999999988788887 467 8999999 888866432 2456777777777
Q ss_pred EcC--------------CCCeEEEEeCC------CeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecC
Q 001248 428 WSP--------------DGSLFGVAYSR------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 487 (1114)
Q Consensus 428 ~sp--------------dg~~las~~~d------g~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~ 487 (1114)
+++ .+..++.++.+ +.|++||+.++. .+ .+.+|...|.+++|+|||+ .|++++.
T Consensus 125 ~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~---~l~~~~~~v~~~~~Spdg~--~la~~s~ 198 (415)
T 2hqs_A 125 HTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF---VVHRSPQPLMSPAWSPDGS--KLAYVTF 198 (415)
T ss_dssp HHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE---EEEEESSCEEEEEECTTSS--EEEEEEC
T ss_pred HHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CE---EEeCCCCcceeeEEcCCCC--EEEEEEe
Confidence 764 26677776654 799999998643 33 5778999999999999999 6788877
Q ss_pred CC---CEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEE-EEecCCe--EEEEEcCCCCCeeeecCCCCeeEEEEE
Q 001248 488 DK---TIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIF-STALDGK--IKAWLYDNLGSRVDYEAPGRWCTTMAY 561 (1114)
Q Consensus 488 d~---~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~d~~--i~~wd~~~~~~~~~~~~~~~~v~~~~~ 561 (1114)
++ .|++||+.+++.. .+..|...+.+++|++ ||+.|+ +++.++. |.+||+.+... ..+..+...+.+++|
T Consensus 199 ~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~sp--dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~ 274 (415)
T 2hqs_A 199 ESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSP--DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTW 274 (415)
T ss_dssp TTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEE
T ss_pred cCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcC--CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEE
Confidence 75 8999999998865 5677888999999865 556666 6666654 99999987543 344445555566666
Q ss_pred ecCCCeEEeeecccceeEEEecCCCCEEEEEeC-CC--eEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeC
Q 001248 562 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD-DF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN 638 (1114)
Q Consensus 562 s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 638 (1114)
+|||+ +|++++. ++ .|++||+.+++.. .+..+. ..+.+++|+|||++|++++.
T Consensus 275 spdg~---------------------~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~~--~~~~~~~~spdG~~l~~~~~ 330 (415)
T 2hqs_A 275 FPDSQ---------------------NLAFTSDQAGRPQVYKVNINGGAPQ-RITWEG--SQNQDADVSSDGKFMVMVSS 330 (415)
T ss_dssp CTTSS---------------------EEEEEECTTSSCEEEEEETTSSCCE-ECCCSS--SEEEEEEECTTSSEEEEEEE
T ss_pred CCCCC---------------------EEEEEECCCCCcEEEEEECCCCCEE-EEecCC--CcccCeEECCCCCEEEEEEC
Confidence 66554 6777665 44 7888899887643 333332 35778999999999988876
Q ss_pred C---CcEEEEEccCC
Q 001248 639 D---NGIKILATSDG 650 (1114)
Q Consensus 639 d---g~i~iwd~~~~ 650 (1114)
+ ..|++||+.++
T Consensus 331 ~~g~~~i~~~d~~~~ 345 (415)
T 2hqs_A 331 NGGQQHIAKQDLATG 345 (415)
T ss_dssp CSSCEEEEEEETTTC
T ss_pred cCCceEEEEEECCCC
Confidence 4 46777776554
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-21 Score=242.46 Aligned_cols=243 Identities=11% Similarity=0.095 Sum_probs=171.2
Q ss_pred CccEEEEeeCCCEEEEEeCCeEEEEEcCC-----CccccccCCCCCC--------------eEEEEEecCCCcEEEEEe-
Q 001248 820 AVPCFALSKNDSYVMSASGGKISLFNMMT-----FKTMATFMPPPPA--------------ATFLAFHPQDNNIIAIGM- 879 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~--------------i~~l~~sp~d~~~la~g~- 879 (1114)
.+.+++|||||++|+++.++.|++||+.+ ++.......+... +.+++||| ||++||+++
T Consensus 122 ~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~ 200 (706)
T 2z3z_A 122 ETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRM 200 (706)
T ss_dssp CCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEE
T ss_pred cccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEE
Confidence 35556777888877776678888888877 6655443333332 58999999 899999887
Q ss_pred --------------------------------CCCcEEEEEcccceEEEeec--ccccCeeEEEEcCCCCEEEEEeCCC-
Q 001248 880 --------------------------------DDSSIQIYNVRVDEVKSKLK--GHSKRITGLAFSHALNVLVSSGADS- 924 (1114)
Q Consensus 880 --------------------------------~dg~v~iwd~~~~~~~~~l~--~h~~~V~~l~~s~d~~~l~s~s~D~- 924 (1114)
.+..|++||+.+++...... .|...+.+++|+|||++|++++.|+
T Consensus 201 d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 280 (706)
T 2z3z_A 201 DQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRA 280 (706)
T ss_dssp ECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTT
T ss_pred CCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCC
Confidence 45789999999987655442 5777899999999999999988776
Q ss_pred ----cEEEEeCCCCccccccccccCCCCCCCCCCceEEEEcc--CCcEEEEE-eCCeEEEEEcC-CCceeeeeecCCCCc
Q 001248 925 ----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ--DQIHFLVV-HETQLAIFETT-KLECVKQWVPRESSA 996 (1114)
Q Consensus 925 ----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fsp--dg~~l~~~-~d~~i~iwd~~-~~~~~~~~~~~~h~~ 996 (1114)
.|++||+.+++............ ....+..++|+| ||++++++ .++.+++|++. ++..+..+. .|..
T Consensus 281 ~~~~~v~~~d~~~g~~~~~~~~~~~~~---~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~--~~~~ 355 (706)
T 2z3z_A 281 QNECKVNAYDAETGRFVRTLFVETDKH---YVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT--KGEW 355 (706)
T ss_dssp SCEEEEEEEETTTCCEEEEEEEEECSS---CCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC--CSSS
T ss_pred CCeeEEEEEECCCCceeeEEEEccCCC---eECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecC--CCCe
Confidence 89999999863211111111111 011246789999 99988885 67788888876 566666554 5566
Q ss_pred CeeE-EEECCCCCEEEEEEcC-C----eEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCC-
Q 001248 997 PITH-ATFSCDSQLVYACFLD-A----TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD- 1069 (1114)
Q Consensus 997 ~v~~-l~~s~dg~~l~s~s~D-g----~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~D- 1069 (1114)
.+.+ ++|+|||+.|+.++.+ + .|+.||+.+++. ..+. . ...+. .++|+| |+++|+.++.+
T Consensus 356 ~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~-~~l~------~---~~~~~--~~~~sp-dg~~l~~~~~~~ 422 (706)
T 2z3z_A 356 EVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT-KDLT------P---ESGMH--RTQLSP-DGSAIIDIFQSP 422 (706)
T ss_dssp CEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC-EESC------C---SSSEE--EEEECT-TSSEEEEEEECS
T ss_pred EEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc-eecc------C---CCceE--EEEECC-CCCEEEEEecCC
Confidence 7876 7999999988766554 3 677788887763 3332 1 11144 789999 67877766444
Q ss_pred ---CcEEEEeccCCC
Q 001248 1070 ---GGVHVFEPLESE 1081 (1114)
Q Consensus 1070 ---g~v~vW~i~~~~ 1081 (1114)
+.|++||+.+++
T Consensus 423 ~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 423 TVPRKVTVTNIGKGS 437 (706)
T ss_dssp SCSCEEEEEESSSCE
T ss_pred CCCcEEEEEECCCCe
Confidence 569999998876
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-21 Score=239.91 Aligned_cols=248 Identities=7% Similarity=0.013 Sum_probs=155.1
Q ss_pred ceEEEEcCCCCeEEEEEecCCcEEEEEcCCcce--eEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEE
Q 001248 361 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRER--LVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 438 (1114)
Q Consensus 361 v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 438 (1114)
+..+.|+ |.. +++++.++ | +||+.+|+. ....... .+.. ...........+...|.+++|||| ++++.+
T Consensus 28 ~~~~~w~--g~~-~~~~~~~~-i-~~d~~tg~~~~~~l~~~~--~~~~-~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~ 98 (706)
T 2z3z_A 28 VVGLQWM--GDN-YVFIEGDD-L-VFNKANGKSAQTTRFSAA--DLNA-LMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF 98 (706)
T ss_dssp CTTCEEE--TTE-EEEEETTE-E-EEEC-------CEEEEHH--HHHT-TC-----------CCCEEEEETTT-TEEEEE
T ss_pred CCCCcCc--CCe-EEEEeCCc-E-EEECCCCcEeeEEeechh--Hhhh-hccchhccccccccCceeEEECCC-CeEEEE
Confidence 4557888 555 55566677 8 999999876 3211000 0000 000000000112247999999999 666666
Q ss_pred eCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCC-----CcceeEeeccccC--
Q 001248 439 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-----GAKQYIFEGHEAP-- 511 (1114)
Q Consensus 439 ~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~~h~~~-- 511 (1114)
. ++.|++||+.+++... +..+...+.+++|||||+ .|+++ .|+.|++||+.+ ++.......+...
T Consensus 99 ~-~~~i~~~d~~~~~~~~----l~~~~~~~~~~~~SpdG~--~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~ 170 (706)
T 2z3z_A 99 T-QGGLVGFDMLARKVTY----LFDTNEETASLDFSPVGD--RVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLV 170 (706)
T ss_dssp E-TTEEEEEETTTTEEEE----EECCTTCCTTCEECTTSS--EEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEE
T ss_pred E-CCEEEEEECCCCceEE----ccCCcccccCCcCCCCCC--EEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeE
Confidence 4 5999999999876443 456777899999999999 56664 579999999998 7766544444443
Q ss_pred ------------EEEEeeccCCCceEEEEEe---------------------------------cCCeEEEEEcCCCCCe
Q 001248 512 ------------VYSVCPHHKENIQFIFSTA---------------------------------LDGKIKAWLYDNLGSR 546 (1114)
Q Consensus 512 ------------v~~~~~~~~~~~~~l~s~~---------------------------------~d~~i~~wd~~~~~~~ 546 (1114)
+.+++|+ +||++|++++ .+..|.+||+.+++..
T Consensus 171 ~g~~~~~ee~~~~~~~~~S--pDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~ 248 (706)
T 2z3z_A 171 YGQAVHQREFGIEKGTFWS--PKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTV 248 (706)
T ss_dssp ESSCCGGGCTTCCCSEEEC--TTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEE
T ss_pred cccchhhhhcCCCceEEEC--CCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceE
Confidence 3667765 5668888887 3467888888765433
Q ss_pred eeec--CCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCC-----eEEEEECCCcceEEEeccCCCC-
Q 001248 547 VDYE--APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF-----SIKFWDMDSVQLLTSIDADGGL- 618 (1114)
Q Consensus 547 ~~~~--~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~- 618 (1114)
.... .+...+..++ |+|+++++++++.++ .|++||+.+++....+......
T Consensus 249 ~~~~~~~~~~~~~~~~---------------------~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~ 307 (706)
T 2z3z_A 249 YLQTGEPKEKFLTNLS---------------------WSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKH 307 (706)
T ss_dssp ECCCCSCTTCEEEEEE---------------------ECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSS
T ss_pred eeccCCCCceeEeeEE---------------------EECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCC
Confidence 2211 2233444444 455555677766654 8999999998433333211111
Q ss_pred --CCcCeEEEcC--CCCEEEEEeCCCcEEEEEcc
Q 001248 619 --PASPRIRFNK--DGCLLAVSTNDNGIKILATS 648 (1114)
Q Consensus 619 --~~v~~~~~s~--d~~~l~~~~~dg~i~iwd~~ 648 (1114)
..+.+++|+| ||++++++..++.+++|.+.
T Consensus 308 ~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~ 341 (706)
T 2z3z_A 308 YVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYD 341 (706)
T ss_dssp CCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEE
T ss_pred eECccCCceeecCCCCEEEEEEccCCccEEEEEE
Confidence 2346789999 99999999899999998764
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.89 E-value=3e-21 Score=239.80 Aligned_cols=384 Identities=12% Similarity=0.079 Sum_probs=243.7
Q ss_pred CEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCC---eeEEEEEecCCCeEEeeecccceeEEEecCCCC
Q 001248 511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR---WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 587 (1114)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~---~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~ 587 (1114)
.+.+++|+ +||+++++ +.||.|++||+.+++....+..+.. .+.+++|+|||+
T Consensus 18 ~~~~~~~s--pdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~--------------------- 73 (723)
T 1xfd_A 18 HDPEAKWI--SDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDRE--------------------- 73 (723)
T ss_dssp CCCCCCBS--SSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSS---------------------
T ss_pred cccccEEc--CCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCC---------------------
Confidence 35566765 45577766 7899999999998877666554443 255666666655
Q ss_pred EEEEEeCC---------CeEEEEECCCcceEEEecc-CCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeec
Q 001248 588 RFLAAGDD---------FSIKFWDMDSVQLLTSIDA-DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657 (1114)
Q Consensus 588 ~l~~~~~d---------g~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 657 (1114)
+|++++.+ +.|++||+.+++. ..+.. ..+...+..++|||||+.|+.++. +.|++|++.++. ..+..
T Consensus 74 ~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~-~~~~~ 150 (723)
T 1xfd_A 74 YALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQ-AIRVV 150 (723)
T ss_dssp EEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSC-CEEEE
T ss_pred EEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCc-eEEEe
Confidence 67776653 7899999998876 33332 223334789999999999999886 799999988773 22222
Q ss_pred cccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCC
Q 001248 658 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP 737 (1114)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~ 737 (1114)
..+...+ +..+.. -|-.+
T Consensus 151 ~~~~~~~----------------------------------------------------~~~g~~-----~~v~~----- 168 (723)
T 1xfd_A 151 STGKEGV----------------------------------------------------IYNGLS-----DWLYE----- 168 (723)
T ss_dssp CCCBTTT----------------------------------------------------EEEEEC-----CHHHH-----
T ss_pred cCCCCCc----------------------------------------------------eECccc-----ceeEE-----
Confidence 1111000 000000 00000
Q ss_pred ccccccccCccccccceEEEEEccCcceeeecccC-ceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCC
Q 001248 738 NQCRSLRLPENLRATKISRLIFTNSGNAILALASN-AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSN 816 (1114)
Q Consensus 738 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~ 816 (1114)
..-...+.+++|+|||+.|+.++.+ +.+.+|++.... + .
T Consensus 169 ----------ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~--------------------~----------~ 208 (723)
T 1xfd_A 169 ----------EEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYT--------------------G----------S 208 (723)
T ss_dssp ----------HTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCS--------------------S----------S
T ss_pred ----------EEeccCcceEEECCCCCEEEEEEECCCccceEEeeccC--------------------C----------c
Confidence 0012345789999999999888765 456666653110 0 0
Q ss_pred CCCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCC------CCCeEEEEEecCCCcEEEEEeC----CCcEEE
Q 001248 817 PEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPP------PPAATFLAFHPQDNNIIAIGMD----DSSIQI 886 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~sp~d~~~la~g~~----dg~v~i 886 (1114)
+...+..+.+.++|.. ..+..|++||+.+++....+..+ ...+..++||| ||++|++... +..|++
T Consensus 209 ~~~~~~~~~~~~~G~~---~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~ 284 (723)
T 1xfd_A 209 IYPTVKPYHYPKAGSE---NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTL 284 (723)
T ss_dssp SSCCCEEEECCBTTSC---CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEE
T ss_pred CCCcceeccCCCCCCC---CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEE
Confidence 2234677888888763 22468999999988865666544 56789999999 8988877653 358999
Q ss_pred EEcccceEEEeeccc-ccCee----EEEEcCCCCEEEE--EeCCC------cEEEEe-CCCCccccccccccCCCCCCCC
Q 001248 887 YNVRVDEVKSKLKGH-SKRIT----GLAFSHALNVLVS--SGADS------QLCVWS-SDGWEKQKNRFLQIPTGRTPTA 952 (1114)
Q Consensus 887 wd~~~~~~~~~l~~h-~~~V~----~l~~s~d~~~l~s--~s~D~------~v~iwd-~~~~~~~~~~~~~~~~~~~~~~ 952 (1114)
||+.++++...+..+ ...+. .++|+|||+.|+. ...|+ .|.+|| ..+++... ......++
T Consensus 285 ~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~--~~~l~~~~---- 358 (723)
T 1xfd_A 285 CDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDN--IQSITSGD---- 358 (723)
T ss_dssp EETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCC--CCBSCCSS----
T ss_pred EeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccc--eeEeecCC----
Confidence 999999877666443 34343 7899999997775 45666 466677 34332000 11111121
Q ss_pred CCceE-EEEccCCcEEEE-EeC---CeEEEEEcCCCc--eeeeeecC-CCCcCeeEEEECCCCCEEEEEEcC-C--eEEE
Q 001248 953 QSDTR-VQFHQDQIHFLV-VHE---TQLAIFETTKLE--CVKQWVPR-ESSAPITHATFSCDSQLVYACFLD-A--TVCV 1021 (1114)
Q Consensus 953 ~~i~~-v~fspdg~~l~~-~~d---~~i~iwd~~~~~--~~~~~~~~-~h~~~v~~l~~s~dg~~l~s~s~D-g--~I~v 1021 (1114)
..+.. ++|+|||+.|+. +.+ +.+.+|++.... ....+... .|...+..++|||||++|+..... + .+.+
T Consensus 359 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~ 438 (723)
T 1xfd_A 359 WDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTV 438 (723)
T ss_dssp SCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEE
T ss_pred eEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEE
Confidence 12343 699999999987 444 779999986432 23333210 156778999999999998865433 2 3455
Q ss_pred EEcCCCeeeEEe
Q 001248 1022 FSAANLKLRCRI 1033 (1114)
Q Consensus 1022 wd~~~~~~~~~~ 1033 (1114)
++..++..+..+
T Consensus 439 ~~~~~~~~~~~~ 450 (723)
T 1xfd_A 439 HNTTDKKKMFDL 450 (723)
T ss_dssp EETTTCCEEEEE
T ss_pred EECCCCCEEEEe
Confidence 676666655444
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=7.2e-21 Score=212.73 Aligned_cols=300 Identities=9% Similarity=0.136 Sum_probs=199.1
Q ss_pred cccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccC-ceEEEEeecccccCCCCCccccc
Q 001248 717 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN-AIHLLWKWQRTERNSSGKATASV 795 (1114)
Q Consensus 717 l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~ 795 (1114)
+++++.++.|++|++...........+ .+...+..++|+|+|+.+++++.+ +.+.+|++...
T Consensus 8 ~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~------------ 70 (343)
T 1ri6_A 8 YIASPESQQIHVWNLNHEGALTLTQVV-----DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPD------------ 70 (343)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEE-----ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTT------------
T ss_pred EEeCCCCCeEEEEEECCCCcEEEeeeE-----ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCC------------
Confidence 344477899999999642211111111 255678889999999988888876 99999997511
Q ss_pred cccccCCCCCccccc-cCCCCCCCCCccEEEEeeCCCEEEEEe--CCeEEEEEc---CCCccccccCCCCCCeEEEEEec
Q 001248 796 APQLWQPPSGIMMTN-DVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNM---MTFKTMATFMPPPPAATFLAFHP 869 (1114)
Q Consensus 796 ~~~~w~~~~g~~~~~-~~~~~~~~~~v~~v~~s~d~~~l~~~~--dg~i~iwd~---~~~~~~~~~~~~~~~i~~l~~sp 869 (1114)
++..... .+. ....+..++|+|++++|++++ ++.|.+||+ .+.+....+..+ ..+.+++|+|
T Consensus 71 --------~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~ 138 (343)
T 1ri6_A 71 --------DGALTFAAESA---LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISP 138 (343)
T ss_dssp --------TCCEEEEEEEE---CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECT
T ss_pred --------CCceeeccccc---cCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECC
Confidence 1111100 011 123688999999999887765 688999999 444444555533 4588999999
Q ss_pred CCCcEEEEEe-CCCcEEEEEccc-ceEEE----eecc-cccCeeEEEEcCCCCEEEEEe-CCCcEEEEeCCC--Cccccc
Q 001248 870 QDNNIIAIGM-DDSSIQIYNVRV-DEVKS----KLKG-HSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDG--WEKQKN 939 (1114)
Q Consensus 870 ~d~~~la~g~-~dg~v~iwd~~~-~~~~~----~l~~-h~~~V~~l~~s~d~~~l~s~s-~D~~v~iwd~~~--~~~~~~ 939 (1114)
++++|++++ .++.|++||+.+ ++... .+.. ....+.+++|+|++++|++++ .++.|.+|+++. ++....
T Consensus 139 -dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~ 217 (343)
T 1ri6_A 139 -DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECV 217 (343)
T ss_dssp -TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEE
T ss_pred -CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEE
Confidence 887777776 899999999987 65432 2222 345788999999999776554 889999999964 322111
Q ss_pred cccccCCCCCCCCCCceEEEEccCCcEEEE-E-eCCeEEEEEcC--CC--ceeeeeecCCCCcCeeEEEECCCCCEEEEE
Q 001248 940 RFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V-HETQLAIFETT--KL--ECVKQWVPRESSAPITHATFSCDSQLVYAC 1013 (1114)
Q Consensus 940 ~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~-~d~~i~iwd~~--~~--~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~ 1013 (1114)
...............+..++|+|||++|++ . .++.|.+||+. ++ +.+..+. .+. .+.+++|+|||++|+++
T Consensus 218 ~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~--~~~-~~~~~~~s~dg~~l~~~ 294 (343)
T 1ri6_A 218 QTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP--TET-QPRGFNVDHSGKYLIAA 294 (343)
T ss_dssp EEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE--CSS-SCCCEEECTTSSEEEEE
T ss_pred eeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeec--CCC-ccceEEECCCCCEEEEe
Confidence 122211111111234568999999998886 4 67899999998 33 3333333 223 38999999999999888
Q ss_pred E-cCCeEEEEEc--CCCeeeEEeCCCcccCCCCCCCCccceEEEecCC
Q 001248 1014 F-LDATVCVFSA--ANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ 1058 (1114)
Q Consensus 1014 s-~Dg~I~vwd~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 1058 (1114)
+ .++.|.+|++ .++++...-. ++.+ ..|..++|.++
T Consensus 295 ~~~~~~v~v~~~d~~~g~~~~~~~----~~~g-----~~p~~i~~~~~ 333 (343)
T 1ri6_A 295 GQKSHHISVYEIVGEQGLLHEKGR----YAVG-----QGPMWVVVNAH 333 (343)
T ss_dssp CTTTCEEEEEEEETTTTEEEEEEE----EECS-----SSCCEEEEEEE
T ss_pred cCCCCeEEEEEEcCCCceeeEccc----cccC-----CCCeeEEEEcc
Confidence 8 5799999954 5665432211 2222 23457788774
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.88 E-value=7e-20 Score=203.52 Aligned_cols=239 Identities=13% Similarity=0.086 Sum_probs=171.6
Q ss_pred EEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeC-CC
Q 001248 364 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS-RH 442 (1114)
Q Consensus 364 v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~-dg 442 (1114)
..|.+++.+++++++.++.|.+||..+++.... +..+...+ +++|+|||++|++++. ++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~ 62 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ 62 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence 467788888899999999999999999987653 22344456 9999999997777665 88
Q ss_pred eEEEEEccCCce-eeeeEeeccccCCeeEEEecCCCCeeEEEEecCC-C--CEEEEeCCCCcceeEeeccccCEEEEeec
Q 001248 443 IVQIYSYHGGDE-VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-K--TIKVWDATNGAKQYIFEGHEAPVYSVCPH 518 (1114)
Q Consensus 443 ~i~iwd~~~~~~-~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d-~--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 518 (1114)
.|.+||+.+++. .. .+..+..+..+++|+|+|+ +++++..+ + .|.+||+.+++.+..+..+ ....+++|+
T Consensus 63 ~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s 136 (331)
T 3u4y_A 63 TLVQIETQLEPPKVV---AIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAIS 136 (331)
T ss_dssp EEEEEECSSSSCEEE---EEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEEC
T ss_pred eEEEEECCCCceeEE---ecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEEC
Confidence 999999999876 33 4555666666699999999 55655555 3 8999999999988887644 456888876
Q ss_pred cCCCce-EEEEEecCCe-EEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEE-eCC
Q 001248 519 HKENIQ-FIFSTALDGK-IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-GDD 595 (1114)
Q Consensus 519 ~~~~~~-~l~s~~~d~~-i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d 595 (1114)
+ +|+ ++++...++. |.+|++.......... ....+.+ .....++|+|++++++++ ..+
T Consensus 137 p--dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~--------~~~~~~~---------~~~~~~~~spdg~~l~v~~~~~ 197 (331)
T 3u4y_A 137 P--NGNGLILIDRSSANTVRRFKIDADGVLFDTG--------QEFISGG---------TRPFNITFTPDGNFAFVANLIG 197 (331)
T ss_dssp T--TSSCEEEEEETTTTEEEEEEECTTCCEEEEE--------EEEECSS---------SSEEEEEECTTSSEEEEEETTT
T ss_pred C--CCCEEEEEecCCCceEEEEEECCCCcEeecC--------CccccCC---------CCccceEECCCCCEEEEEeCCC
Confidence 5 445 4455556688 9999998644332111 0000111 134556777777766554 468
Q ss_pred CeEEEEECCCcce---EEEeccCCCCCCcCeEEEcCCCCEEEEEe-CCCcEEEEEccCC
Q 001248 596 FSIKFWDMDSVQL---LTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDG 650 (1114)
Q Consensus 596 g~i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-~dg~i~iwd~~~~ 650 (1114)
+.|++||+.+++. +..+... ..+..++|+|||++++++. .++.|.+||..++
T Consensus 198 ~~v~v~d~~~~~~~~~~~~~~~~---~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~ 253 (331)
T 3u4y_A 198 NSIGILETQNPENITLLNAVGTN---NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG 253 (331)
T ss_dssp TEEEEEECSSTTSCEEEEEEECS---SCCCCEEECTTSSEEEEECSSEEEEEEEETTTT
T ss_pred CeEEEEECCCCcccceeeeccCC---CCCceEEECCCCCEEEEEEcCCCEEEEEECCCC
Confidence 9999999999988 7777644 3468899999999776665 4778999999877
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.5e-20 Score=208.30 Aligned_cols=244 Identities=11% Similarity=0.143 Sum_probs=173.8
Q ss_pred CCCCccEEEEeeCCCEEEEEe-C-CeEEEEEcC--CCc--cccccCCCCCCeEEEEEecCCCcEEEEEe-CCCcEEEEEc
Q 001248 817 PEEAVPCFALSKNDSYVMSAS-G-GKISLFNMM--TFK--TMATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNV 889 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~~l~~~~-d-g~i~iwd~~--~~~--~~~~~~~~~~~i~~l~~sp~d~~~la~g~-~dg~v~iwd~ 889 (1114)
+...+.+++|+|++++|++++ + +.|.+|++. +++ .+..+..+. .+..++|+| ++++|++++ .++.|++||+
T Consensus 36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~ 113 (343)
T 1ri6_A 36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDH-QGQFVFVGSYNAGNVSVTRL 113 (343)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcC-CCCEEEEEecCCCeEEEEEC
Confidence 556788999999999988887 4 899999997 444 333444333 789999999 787666555 5889999999
Q ss_pred ---ccceEEEeecccccCeeEEEEcCCCCEEEEEe-CCCcEEEEeCCC-Ccccccc--ccccCCCCCCCCCCceEEEEcc
Q 001248 890 ---RVDEVKSKLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDG-WEKQKNR--FLQIPTGRTPTAQSDTRVQFHQ 962 (1114)
Q Consensus 890 ---~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s-~D~~v~iwd~~~-~~~~~~~--~~~~~~~~~~~~~~i~~v~fsp 962 (1114)
.+++.+..+..+. .+.+++|+|++++|++++ .|+.|.+|++.+ ++..... ......+ ..+..++|+|
T Consensus 114 ~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~p 187 (343)
T 1ri6_A 114 EDGLPVGVVDVVEGLD-GCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEG-----AGPRHMVFHP 187 (343)
T ss_dssp ETTEEEEEEEEECCCT-TBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTT-----CCEEEEEECT
T ss_pred CCCccccccccccCCC-CceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCC-----CCcceEEECC
Confidence 5555666665544 588999999999888887 899999999987 4332111 1122112 2568899999
Q ss_pred CCcEEEE-E-eCCeEEEEEcCC--Cce--eeeee--cCCC--CcCeeEEEECCCCCEEEEEE-cCCeEEEEEcC--CC--
Q 001248 963 DQIHFLV-V-HETQLAIFETTK--LEC--VKQWV--PRES--SAPITHATFSCDSQLVYACF-LDATVCVFSAA--NL-- 1027 (1114)
Q Consensus 963 dg~~l~~-~-~d~~i~iwd~~~--~~~--~~~~~--~~~h--~~~v~~l~~s~dg~~l~s~s-~Dg~I~vwd~~--~~-- 1027 (1114)
+|+++++ + .++.+.+|++.. ++. ..... ..++ ...+.+++|+|||++|+++. .|+.|++||+. ++
T Consensus 188 dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~ 267 (343)
T 1ri6_A 188 NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVL 267 (343)
T ss_dssp TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCE
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCce
Confidence 9998766 4 678999999953 432 22221 1111 34677899999999887555 78999999998 33
Q ss_pred eeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEe-CCCcEEEEeccCC
Q 001248 1028 KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL-SDGGVHVFEPLES 1080 (1114)
Q Consensus 1028 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~-~Dg~v~vW~i~~~ 1080 (1114)
+.+..+. .+ . .+..++|+| |+++|++++ .|+.|.+|++...
T Consensus 268 ~~~~~~~------~~--~---~~~~~~~s~-dg~~l~~~~~~~~~v~v~~~d~~ 309 (343)
T 1ri6_A 268 SKEGFQP------TE--T---QPRGFNVDH-SGKYLIAAGQKSHHISVYEIVGE 309 (343)
T ss_dssp EEEEEEE------CS--S---SCCCEEECT-TSSEEEEECTTTCEEEEEEEETT
T ss_pred EEeeeec------CC--C---ccceEEECC-CCCEEEEecCCCCeEEEEEEcCC
Confidence 3443333 11 1 133799999 678888777 6899999977643
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.1e-20 Score=205.39 Aligned_cols=286 Identities=13% Similarity=0.066 Sum_probs=197.0
Q ss_pred EEEccCcce-eeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEE
Q 001248 757 LIFTNSGNA-ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMS 835 (1114)
Q Consensus 757 l~~s~~~~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~ 835 (1114)
..|.++++. +++...++.|.+||+. +++....... +...+ .++|+|||+++++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~----------------------~~~~~~~~~~---~~~~~-~~~~s~dg~~l~~ 56 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTD----------------------TLEILNQITL---GYDFV-DTAITSDCSNVVV 56 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETT----------------------TCCEEEEEEC---CCCEE-EEEECSSSCEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCc----------------------ccceeeeEEc---cCCcc-eEEEcCCCCEEEE
Confidence 345555554 5666778999988765 3333221111 34445 9999999997776
Q ss_pred Ee--CCeEEEEEcCCCcc-ccccCCCCCCeEEEEEecCCCcEEEEEeCCC---cEEEEEcccceEEEeecccccCeeEEE
Q 001248 836 AS--GGKISLFNMMTFKT-MATFMPPPPAATFLAFHPQDNNIIAIGMDDS---SIQIYNVRVDEVKSKLKGHSKRITGLA 909 (1114)
Q Consensus 836 ~~--dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg---~v~iwd~~~~~~~~~l~~h~~~V~~l~ 909 (1114)
++ ++.|.+||+.+++. ...+..+.....+++|+| ++++|+++..++ .|++||+.+++.+..+..+ ....+++
T Consensus 57 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~ 134 (331)
T 3u4y_A 57 TSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIA 134 (331)
T ss_dssp EESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEE
T ss_pred EeCCCCeEEEEECCCCceeEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceE
Confidence 65 68999999999887 666666666555599999 888888666553 8999999999988877654 4468999
Q ss_pred EcCCCCEEEE-EeCCCc-EEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-E-eCCeEEEEEcCCCce
Q 001248 910 FSHALNVLVS-SGADSQ-LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V-HETQLAIFETTKLEC 985 (1114)
Q Consensus 910 ~s~d~~~l~s-~s~D~~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~-~d~~i~iwd~~~~~~ 985 (1114)
|+|||++|++ ...++. |.+|++................ ...+..++|+|||+++++ + .++.|.+||+.+++.
T Consensus 135 ~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 135 ISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISG----GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN 210 (331)
T ss_dssp ECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECS----SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred ECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccC----CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence 9999986554 456688 9999998533211110111111 134689999999997766 3 578999999999988
Q ss_pred ---eeeeecCCCCcCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCCee--eEEeCCCcccCCCCCCCCccceEEEecCCC
Q 001248 986 ---VKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKL--RCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1059 (1114)
Q Consensus 986 ---~~~~~~~~h~~~v~~l~~s~dg~~l~s~s-~Dg~I~vwd~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d 1059 (1114)
+..+.. ...+..++|+|||++|++++ .++.|.+||+.+++. +..+......... .......++|+| |
T Consensus 211 ~~~~~~~~~---~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~sp-d 283 (331)
T 3u4y_A 211 ITLLNAVGT---NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPR---PLFGANQMALNK-T 283 (331)
T ss_dssp CEEEEEEEC---SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCG---GGTTCCCEEECT-T
T ss_pred cceeeeccC---CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCC---CcccccceEECC-C
Confidence 666652 46778999999999887665 478899999999987 4333211001000 000112589999 6
Q ss_pred CCeEEEE-eCCCcEEEEeccCCC
Q 001248 1060 PNEFALG-LSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1060 ~~~l~s~-~~Dg~v~vW~i~~~~ 1081 (1114)
+++|+++ ..++.|.+|++.+..
T Consensus 284 g~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 284 ETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp SSEEEEEETTTTEEEEEETTSCE
T ss_pred CCEEEEecCCCCcEEEEEecCCc
Confidence 7777555 456799999998866
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-19 Score=202.88 Aligned_cols=273 Identities=12% Similarity=0.120 Sum_probs=205.8
Q ss_pred ccceEEEEEccCcceeeeccc-------CceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccE
Q 001248 751 ATKISRLIFTNSGNAILALAS-------NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC 823 (1114)
Q Consensus 751 ~~~i~~l~~s~~~~~l~~~~~-------dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~ 823 (1114)
...+..++|+|+++.+++++. ++.|.+||.. ++....... ....+..
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~----------------------~~~~~~~~~----~~~~~~~ 93 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPV----------------------TLEVTQAIH----NDLKPFG 93 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTT----------------------TCCEEEEEE----ESSCCCS
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCC----------------------CCeEEEEEe----cCCCcce
Confidence 356789999999998887764 4577777654 333322211 2334678
Q ss_pred EEEeeCCCEEEEEe--CCeEEEEEcCCCccccccCCCCC---------CeEEEEEecCCCcEEEEEe--CCCcEEEEEcc
Q 001248 824 FALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPP---------AATFLAFHPQDNNIIAIGM--DDSSIQIYNVR 890 (1114)
Q Consensus 824 v~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~---------~i~~l~~sp~d~~~la~g~--~dg~v~iwd~~ 890 (1114)
++++++|++++++. ++.|.+||..+++.+..+..+.. .+.+++|+| +++++++++ .++.|++||..
T Consensus 94 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~ 172 (353)
T 3vgz_A 94 ATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGG 172 (353)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETT
T ss_pred EEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCC
Confidence 99999999776665 68999999999988777765432 278899999 777666665 57899999999
Q ss_pred cceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE
Q 001248 891 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 970 (1114)
Q Consensus 891 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~ 970 (1114)
+++.+..+..+...+.+++|+||+++|++++.++.|.+||+.+++........ ..++ ...+..++|+|||++++++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~---~~~~~~~~~s~dg~~l~~~ 248 (353)
T 3vgz_A 173 NIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLL-DDGK---EHFFINISLDTARQRAFIT 248 (353)
T ss_dssp TTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECC-CSSS---CCCEEEEEEETTTTEEEEE
T ss_pred CCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcC-CCCC---CcccceEEECCCCCEEEEE
Confidence 99998888867777899999999999999999999999999986643321110 1111 1356789999999988774
Q ss_pred --eCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCC
Q 001248 971 --HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSN 1047 (1114)
Q Consensus 971 --~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s-~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 1047 (1114)
.++.|.+||..+++.+..+.... ...++|+|||+++++++ .++.|.+||..+++.+..+. .+
T Consensus 249 ~~~~~~v~~~d~~~~~~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~----~~------- 313 (353)
T 3vgz_A 249 DSKAAEVLVVDTRNGNILAKVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD----TP------- 313 (353)
T ss_dssp ESSSSEEEEEETTTCCEEEEEECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEE----CC-------
T ss_pred eCCCCEEEEEECCCCcEEEEEEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEe----cC-------
Confidence 45899999999999888776422 36799999999876666 68999999999999988775 11
Q ss_pred ccceEEEecCCCCCeEEEEeCCC
Q 001248 1048 VHPLVIAAHPQEPNEFALGLSDG 1070 (1114)
Q Consensus 1048 v~~~~~~~~~~d~~~l~s~~~Dg 1070 (1114)
..+..++|+| |+++|+++..++
T Consensus 314 ~~~~~~~~s~-dg~~l~v~~~~~ 335 (353)
T 3vgz_A 314 THPNSLALSA-DGKTLYVSVKQK 335 (353)
T ss_dssp SEEEEEEECT-TSCEEEEEEECC
T ss_pred CCCCeEEEcC-CCCEEEEEEccc
Confidence 2345899999 678777666553
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.8e-20 Score=204.20 Aligned_cols=197 Identities=13% Similarity=0.063 Sum_probs=150.6
Q ss_pred cEEEEeeCCCEEEEE-------------eCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 001248 822 PCFALSKNDSYVMSA-------------SGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 888 (1114)
Q Consensus 822 ~~v~~s~d~~~l~~~-------------~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd 888 (1114)
.+++++|||++++++ .++.|.+||+.+++.+..+.. ...+.+++|+| ++++|+++ ++.|++||
T Consensus 85 ~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~--~~~i~~~d 160 (337)
T 1pby_B 85 FGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGL--GRDLHVMD 160 (337)
T ss_dssp TCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEE--SSSEEEEE
T ss_pred cceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECC-CCCEEEEe--CCeEEEEE
Confidence 345666666665555 368999999998887777664 45678899999 88878777 68999999
Q ss_pred cccceEEEeecccccCeeEEEEcCCCCEEEEEeCCC------------------------cEEEEeCCCCcccccccccc
Q 001248 889 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS------------------------QLCVWSSDGWEKQKNRFLQI 944 (1114)
Q Consensus 889 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~------------------------~v~iwd~~~~~~~~~~~~~~ 944 (1114)
+.+++.+..+..+.. ...+.|+||++.|+..+.++ .|.+||+.+++.. .....
T Consensus 161 ~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~- 237 (337)
T 1pby_B 161 PEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVR- 237 (337)
T ss_dssp TTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEE-
T ss_pred CCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecC-
Confidence 999998877765441 11347899998776554332 4689999886643 11111
Q ss_pred CCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEc
Q 001248 945 PTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1024 (1114)
Q Consensus 945 ~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~ 1024 (1114)
.+. ..+..++|+|||++++++ ++.|.+||+.+++.+..+.. ...+.+++|+|||++|++++.++.|++||+
T Consensus 238 --~~~---~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~ 308 (337)
T 1pby_B 238 --IMD---VFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPL---PHSYYSVNVSTDGSTVWLGGALGDLAAYDA 308 (337)
T ss_dssp --ECS---SCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEEC---SSCCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred --CCC---CceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecC---CCceeeEEECCCCCEEEEEcCCCcEEEEEC
Confidence 111 256789999999999988 79999999999988877653 346789999999999999999999999999
Q ss_pred CCCeeeEEeC
Q 001248 1025 ANLKLRCRIN 1034 (1114)
Q Consensus 1025 ~~~~~~~~~~ 1034 (1114)
.+++.+..+.
T Consensus 309 ~~~~~~~~~~ 318 (337)
T 1pby_B 309 ETLEKKGQVD 318 (337)
T ss_dssp TTCCEEEEEE
T ss_pred cCCcEEEEEE
Confidence 9999998876
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.9e-20 Score=206.13 Aligned_cols=271 Identities=13% Similarity=0.079 Sum_probs=199.7
Q ss_pred ceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCC-CccEEEEeeCCCEEEEEe--CCe
Q 001248 764 NAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE-AVPCFALSKNDSYVMSAS--GGK 840 (1114)
Q Consensus 764 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~-~v~~v~~s~d~~~l~~~~--dg~ 840 (1114)
+.+++++.++.|.+||+.. +..+.....+ +.. .+..++++|||++++++. ++.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~----------------------~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~v~~~~~~~ 57 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEK----------------------MAVDKVITIA--DAGPTPMVPMVAPGGRIAYATVNKSES 57 (337)
T ss_dssp EEEEEEETTTEEEEEETTT----------------------TEEEEEEECT--TCTTCCCCEEECTTSSEEEEEETTTTE
T ss_pred cEEEEcCCCCeEEEEECCC----------------------CcEEEEEEcC--CCCCCccceEEcCCCCEEEEEeCCCCe
Confidence 3578888899999988652 2222211100 111 478899999998776554 689
Q ss_pred EEEEEcCCCccccccCCCC-----CCeEEEEEecCCCcEEEEEe------------CCCcEEEEEcccceEEEeeccccc
Q 001248 841 ISLFNMMTFKTMATFMPPP-----PAATFLAFHPQDNNIIAIGM------------DDSSIQIYNVRVDEVKSKLKGHSK 903 (1114)
Q Consensus 841 i~iwd~~~~~~~~~~~~~~-----~~i~~l~~sp~d~~~la~g~------------~dg~v~iwd~~~~~~~~~l~~h~~ 903 (1114)
|.+||+.+++.+..+.... ..+..++|+| ++++|+++. .++.|++||+.+++.+..+.. ..
T Consensus 58 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~ 135 (337)
T 1pby_B 58 LVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PR 135 (337)
T ss_dssp EEEEETTTCCEEEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CS
T ss_pred EEEEECCCCCeEeeEEcCCcccccccccceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CC
Confidence 9999999988876665321 2577899999 888888876 579999999999988777764 45
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEe--CC--------
Q 001248 904 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH--ET-------- 973 (1114)
Q Consensus 904 ~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~--d~-------- 973 (1114)
.+.+++|+||+++|+++ ++.|.+||+.+++.... +. .+.. ...+.|+|||++++++. ++
T Consensus 136 ~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~--~~--~~~~-----~~~~~~s~dg~~l~~~~~~~~~~~~~~~~ 204 (337)
T 1pby_B 136 QITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVED--KP--IQSW-----EAETYAQPDVLAVWNQHESSGVMATPFYT 204 (337)
T ss_dssp SCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEE--EC--STTT-----TTTTBCCCBCCCCCCCCTTTTEEEEEEEE
T ss_pred CcceeEECCCCCEEEEe--CCeEEEEECCCCcEeee--ee--cccc-----CCCceeCCCccEEeeeccCCCceeeeeec
Confidence 68899999999988888 68899999998654221 11 1110 11237899998776532 22
Q ss_pred ---------------eEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcc
Q 001248 974 ---------------QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAY 1038 (1114)
Q Consensus 974 ---------------~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~ 1038 (1114)
.|.+||+.+++.. ......+...+.+++|+|||++|+++ ++.|++||+.+++.+..+.
T Consensus 205 ~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~---- 277 (337)
T 1pby_B 205 ARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP---- 277 (337)
T ss_dssp EBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE----
T ss_pred cccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceec----
Confidence 4789999998876 44444566788999999999999988 7999999999999887765
Q ss_pred cCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCCCcccC
Q 001248 1039 LPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGV 1086 (1114)
Q Consensus 1039 ~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~~~~~~ 1086 (1114)
.+. .+..++|+| |+++|++++.|+.|++||+.+++.....
T Consensus 278 ~~~-------~~~~~~~s~-dg~~l~~~~~~~~i~v~d~~~~~~~~~~ 317 (337)
T 1pby_B 278 LPH-------SYYSVNVST-DGSTVWLGGALGDLAAYDAETLEKKGQV 317 (337)
T ss_dssp CSS-------CCCEEEECT-TSCEEEEESBSSEEEEEETTTCCEEEEE
T ss_pred CCC-------ceeeEEECC-CCCEEEEEcCCCcEEEEECcCCcEEEEE
Confidence 111 133799999 6888898999999999999998843333
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.6e-19 Score=200.95 Aligned_cols=248 Identities=10% Similarity=0.074 Sum_probs=181.9
Q ss_pred EeccCCCCceEEEEcCCCCeEEEEEec------CCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEE
Q 001248 353 RTLNQGSSPMSMDFHPVQQTLLLVGTN------VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV 426 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spdg~~ll~tg~~------dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l 426 (1114)
........+..++|+|+|++++++... ++.|.+||..+++.+.... ....+..+
T Consensus 35 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--------------------~~~~~~~~ 94 (353)
T 3vgz_A 35 LRKAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--------------------NDLKPFGA 94 (353)
T ss_dssp EEEEEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--------------------ESSCCCSE
T ss_pred hhhhhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--------------------cCCCcceE
Confidence 334456778999999999975554433 6789999999988765311 12347789
Q ss_pred EEcCCCCeEEEE-eCCCeEEEEEccCCceeeeeEeeccccC---------CeeEEEecCCCCeeEEEEecCCCCEEEEeC
Q 001248 427 IWSPDGSLFGVA-YSRHIVQIYSYHGGDEVRQHLEIDAHVG---------GVNDIAFSHPNKQLCVITCGDDKTIKVWDA 496 (1114)
Q Consensus 427 ~~spdg~~las~-~~dg~i~iwd~~~~~~~~~~~~l~~h~~---------~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~ 496 (1114)
+|+|||++++++ ..++.|.+||..+++.+.. +..+.. .+.+++|+|+++.+++...+.++.|.+||+
T Consensus 95 ~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~ 171 (353)
T 3vgz_A 95 TINNTTQTLWFGNTVNSAVTAIDAKTGEVKGR---LVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDG 171 (353)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTCCEEEE---EESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEET
T ss_pred EECCCCCEEEEEecCCCEEEEEeCCCCeeEEE---EecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcC
Confidence 999999966555 5579999999999886653 333322 278899999999633333256889999999
Q ss_pred CCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecC----CCCeeEEEEEecCCCeEEeee
Q 001248 497 TNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA----PGRWCTTMAYSADGTRTYQGF 572 (1114)
Q Consensus 497 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~----~~~~v~~~~~s~~g~~~~~~~ 572 (1114)
.+++.+..+..+...+..++|++ +++++++++.++.|.+||..+.+....+.. +...+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-------------- 235 (353)
T 3vgz_A 172 GNIKLKTAIQNTGKMSTGLALDS--EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFIN-------------- 235 (353)
T ss_dssp TTTEEEEEECCCCTTCCCCEEET--TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEE--------------
T ss_pred CCCceEEEecCCCCccceEEECC--CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccce--------------
Confidence 99999888876666677788754 557899999999999999987665544433 2223334
Q ss_pred cccceeEEEecCCCCEEEEEe-CCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEe-CCCcEEEEEccCC
Q 001248 573 RKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDG 650 (1114)
Q Consensus 573 ~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-~dg~i~iwd~~~~ 650 (1114)
++|+|+++++++++ .++.|.+||..+++.+..+.... ...++|+|+|++++++. .++.|.+||..++
T Consensus 236 -------~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~ 304 (353)
T 3vgz_A 236 -------ISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSY 304 (353)
T ss_dssp -------EEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred -------EEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence 44555555566655 45999999999999888887543 26799999999766655 6899999998776
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-19 Score=202.43 Aligned_cols=248 Identities=12% Similarity=0.158 Sum_probs=168.7
Q ss_pred CCCCccEEEEeeCCCEEEEEe---CCeEEEEEcCCCc--cccccCCCCCCeEEEEEecCCCcEEEEEe-CCCcEEEEEcc
Q 001248 817 PEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFK--TMATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVR 890 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~~l~~~~---dg~i~iwd~~~~~--~~~~~~~~~~~i~~l~~sp~d~~~la~g~-~dg~v~iwd~~ 890 (1114)
+...+..++|+|||+.++++. ++.|.+|++.+++ .+..+..+...+..++|+| ++++|++++ .++.|.+|++.
T Consensus 38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEEC
T ss_pred ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeC
Confidence 345677899999999444443 3789999997665 3344444667789999999 888887777 78999999996
Q ss_pred c-c--eEEEeecc---------cccCeeEEEEcCCCCEEEEEeCCCcEEEEeCC-CCccccccccccCCCCCCCCCCceE
Q 001248 891 V-D--EVKSKLKG---------HSKRITGLAFSHALNVLVSSGADSQLCVWSSD-GWEKQKNRFLQIPTGRTPTAQSDTR 957 (1114)
Q Consensus 891 ~-~--~~~~~l~~---------h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~i~~ 957 (1114)
. + +.+..+.. +...+.+++|+|||+++++...++.|.+|++. +++...........+ ..+..
T Consensus 117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g-----~~p~~ 191 (347)
T 3hfq_A 117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG-----FGPRH 191 (347)
T ss_dssp TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT-----CCEEE
T ss_pred CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC-----CCCce
Confidence 3 2 33333321 12348889999999977777778999999998 433221111122222 24578
Q ss_pred EEEccCCcEEEEE--eCCeEEEEEcCC--Ccee--eeeecCCC----CcCeeEEEECCCCCEEE-EEEcCCeEEEEEcCC
Q 001248 958 VQFHQDQIHFLVV--HETQLAIFETTK--LECV--KQWVPRES----SAPITHATFSCDSQLVY-ACFLDATVCVFSAAN 1026 (1114)
Q Consensus 958 v~fspdg~~l~~~--~d~~i~iwd~~~--~~~~--~~~~~~~h----~~~v~~l~~s~dg~~l~-s~s~Dg~I~vwd~~~ 1026 (1114)
++|+|||++|+++ .++.+.+|++.. ++.. ..+..... ...+..++|+|||++|+ +...++.|.+|++..
T Consensus 192 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 192 LVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA 271 (347)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence 9999999987773 578899999874 4432 22221111 14588999999999885 455689999999973
Q ss_pred -C--eeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCC-CcEEEEec--cCCC
Q 001248 1027 -L--KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-GGVHVFEP--LESE 1081 (1114)
Q Consensus 1027 -~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~D-g~v~vW~i--~~~~ 1081 (1114)
+ +.+..+.. .+ ..+..++|+| |+++|++++.+ +.|.+|++ .+++
T Consensus 272 ~g~~~~~~~~~~-----~~-----~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~d~~tg~ 321 (347)
T 3hfq_A 272 DGHLTLIQQIST-----EG-----DFPRDFDLDP-TEAFVVVVNQNTDNATLYARDLTSGK 321 (347)
T ss_dssp GGCEEEEEEEEC-----SS-----SCCCEEEECT-TSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred CCcEEEeEEEec-----CC-----CCcCeEEECC-CCCEEEEEEcCCCcEEEEEEeCCCCe
Confidence 2 34433331 01 2244899999 68888877755 89999955 4455
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-18 Score=198.23 Aligned_cols=315 Identities=14% Similarity=0.144 Sum_probs=200.2
Q ss_pred ccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCC
Q 001248 751 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 830 (1114)
Q Consensus 751 ~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~ 830 (1114)
...+..+++++++..+++++.++ +++|+.......... ......+........ ..+...|.+++|+|+|
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~-------~~~~~~v~~l~~spdg 104 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKP---GDDPNKIVDKVQGLL-------VPMKFPIHHLALSCDN 104 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCT---TCCTTCEEECCCCEE-------ECCSSCEEEEEECTTS
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhccc---ccCcccccccCcccc-------ccCCCcccEEEEcCCC
Confidence 34578899999999999988887 888876432110000 000000000000000 1256789999999999
Q ss_pred CEEE----EEe-CCeEEEEEcCCC--------cc---ccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceE
Q 001248 831 SYVM----SAS-GGKISLFNMMTF--------KT---MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV 894 (1114)
Q Consensus 831 ~~l~----~~~-dg~i~iwd~~~~--------~~---~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~ 894 (1114)
++|+ +++ |++|+|||+.++ +. +..+.+|...|.+++|+|+++++||+++.||+|++||+.++..
T Consensus 105 ~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~ 184 (434)
T 2oit_A 105 LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK 184 (434)
T ss_dssp CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE
T ss_pred CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc
Confidence 9999 666 899999998765 11 3456778999999999995489999999999999999999887
Q ss_pred EEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCC-CCCCCCCceEEEEccCCcEEEE--Ee
Q 001248 895 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG-RTPTAQSDTRVQFHQDQIHFLV--VH 971 (1114)
Q Consensus 895 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~i~~v~fspdg~~l~~--~~ 971 (1114)
+....+|...|++++|+|+|++|++|+.||+|++||++. +... .+..... .......+.+++|++++.++++ ..
T Consensus 185 ~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~-~~~~--~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~ 261 (434)
T 2oit_A 185 VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTL-QEKK--VIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAA 261 (434)
T ss_dssp EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTC-CEEE--EECCCTTCCTTSCEEEEEEEEEETTEEEEEEEET
T ss_pred eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCC-cccc--cccCCcccCCCCceeEEEEEEecCceEEEEEccC
Confidence 777788999999999999999999999999999999983 2211 1111111 0011136899999999999877 24
Q ss_pred CC------eEEEEEcCCCcee--ee---eec-----CCCCcCeeEEEECCCCCEEEEEEcC-CeEEEEEcCCCe--e-eE
Q 001248 972 ET------QLAIFETTKLECV--KQ---WVP-----RESSAPITHATFSCDSQLVYACFLD-ATVCVFSAANLK--L-RC 1031 (1114)
Q Consensus 972 d~------~i~iwd~~~~~~~--~~---~~~-----~~h~~~v~~l~~s~dg~~l~s~s~D-g~I~vwd~~~~~--~-~~ 1031 (1114)
+| .+++|++.+.+.. .. +.. .+...+-..+.+-+|.+++++++.. +.|.|....... . ..
T Consensus 262 dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~ 341 (434)
T 2oit_A 262 DGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESW 341 (434)
T ss_dssp TCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEE
T ss_pred CCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEE
Confidence 43 3899999865311 11 110 0112222333444777887766643 346666543211 1 01
Q ss_pred EeC--CCcccCCCCCCCCccceEEEec--CCC------------CCeEEEEeCCCcEEEEeccC
Q 001248 1032 RIN--PSAYLPAGVSSSNVHPLVIAAH--PQE------------PNEFALGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1032 ~~~--~~~~~~~~~~~~~v~~~~~~~~--~~d------------~~~l~s~~~Dg~v~vW~i~~ 1079 (1114)
.+. ....+|-........|+.+++. ..+ --.|.+-+.||.+..|.+-.
T Consensus 342 ~~~d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 342 LLEDSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp EECGGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred eccccccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence 110 0112222212223444444432 222 14677888999999999976
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-19 Score=197.72 Aligned_cols=233 Identities=13% Similarity=0.030 Sum_probs=171.1
Q ss_pred CCCCccEEEEeeCCCEEEEEeCCeEEEEEcCC-CccccccCCC-CCCeEEEEEecCCCcEEEEEe--CCCcEEEEEc--c
Q 001248 817 PEEAVPCFALSKNDSYVMSASGGKISLFNMMT-FKTMATFMPP-PPAATFLAFHPQDNNIIAIGM--DDSSIQIYNV--R 890 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~-~~~~~~~~~~-~~~i~~l~~sp~d~~~la~g~--~dg~v~iwd~--~ 890 (1114)
|...+.+++|+|||++|++++++.|++||+.+ ++.......+ ...+.+++|+| ++++|++++ .++.+.||.+ .
T Consensus 40 ~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~l~~~~~~ 118 (297)
T 2ojh_A 40 TPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP-DGALYAISDKVEFGKSAIYLLPST 118 (297)
T ss_dssp ESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT-TSSEEEEEECTTTSSCEEEEEETT
T ss_pred CCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECC-CCCEEEEEEeCCCCcceEEEEECC
Confidence 67789999999999999999999999999998 8777666555 36789999999 899999988 3345555554 4
Q ss_pred cceEEEeecccccCeeEEEEcCCCCEEE-EEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE
Q 001248 891 VDEVKSKLKGHSKRITGLAFSHALNVLV-SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 969 (1114)
Q Consensus 891 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~ 969 (1114)
+++ ...+..+. .+..++|+||+++|+ +++.|+.++||+++..... .. ....+. ..+..++|+|+|++|++
T Consensus 119 ~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~---~~-~~~~~~---~~~~~~~~s~dg~~l~~ 189 (297)
T 2ojh_A 119 GGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV---ET-RLTHGE---GRNDGPDYSPDGRWIYF 189 (297)
T ss_dssp CCC-CEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC---EE-ECCCSS---SCEEEEEECTTSSEEEE
T ss_pred CCc-eEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCc---ce-EcccCC---CccccceECCCCCEEEE
Confidence 444 44454443 489999999999887 7888999999996532111 11 111121 36789999999998887
Q ss_pred -E-eCCeEEEEEcC-CCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcC-----------CeEEEEEcCCCeeeEEeCC
Q 001248 970 -V-HETQLAIFETT-KLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----------ATVCVFSAANLKLRCRINP 1035 (1114)
Q Consensus 970 -~-~d~~i~iwd~~-~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D-----------g~I~vwd~~~~~~~~~~~~ 1035 (1114)
+ .++.+.+|++. .+.....+. .|...+.+++|+|||++|++++.+ +.|++||+.+++......
T Consensus 190 ~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~- 266 (297)
T 2ojh_A 190 NSSRTGQMQIWRVRVDGSSVERIT--DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFD- 266 (297)
T ss_dssp EECTTSSCEEEEEETTSSCEEECC--CCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEE-
T ss_pred EecCCCCccEEEECCCCCCcEEEe--cCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeec-
Confidence 4 47889999876 445555544 567789999999999999988876 569999999887643322
Q ss_pred CcccCCCCCCCCccceEEEecCCCCCeEEEEeCCC
Q 001248 1036 SAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG 1070 (1114)
Q Consensus 1036 ~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg 1070 (1114)
.. +| ...+. .++|+| |+++|++++.|.
T Consensus 267 ---~~-~~-~~~~~--~~~~sp-dg~~l~~~~~~~ 293 (297)
T 2ojh_A 267 ---LF-GG-QGTMN--SPNWSP-DGDEFAYVRYFP 293 (297)
T ss_dssp ---EE-ES-TTTSC--SCCBCT-TSSEEEEEEECC
T ss_pred ---cC-CC-Ccccc--cceECC-CCCEEEEEEecc
Confidence 10 11 11144 688999 678888777654
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.83 E-value=6e-19 Score=192.31 Aligned_cols=240 Identities=15% Similarity=0.120 Sum_probs=170.3
Q ss_pred eeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCC-cceeEEeeeeeeccCCCCcccccccccCC-CCCeeEEEE
Q 001248 351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGS-RERLVLRNFKVWDLGACSMPLQAALVKDP-GVSVNRVIW 428 (1114)
Q Consensus 351 ~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~h-~~~V~~l~~ 428 (1114)
......|...|.+++|+|||++ |++++ ++.|++||+.+ ++... +..+| ...|.+++|
T Consensus 34 ~~~~~~~~~~v~~~~~spdg~~-l~~~~-~~~i~~~d~~~~~~~~~-------------------~~~~~~~~~~~~~~~ 92 (297)
T 2ojh_A 34 MRVVWQTPELFEAPNWSPDGKY-LLLNS-EGLLYRLSLAGDPSPEK-------------------VDTGFATICNNDHGI 92 (297)
T ss_dssp EEEEEEESSCCEEEEECTTSSE-EEEEE-TTEEEEEESSSCCSCEE-------------------CCCTTCCCBCSCCEE
T ss_pred eeeeccCCcceEeeEECCCCCE-EEEEc-CCeEEEEeCCCCCCceE-------------------eccccccccccceEE
Confidence 4456668999999999999996 66665 88999999998 76543 23344 468999999
Q ss_pred cCCCCeEEEEe--CCCeEEEEEc--cCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCC-CCccee
Q 001248 429 SPDGSLFGVAY--SRHIVQIYSY--HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQY 503 (1114)
Q Consensus 429 spdg~~las~~--~dg~i~iwd~--~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~ 503 (1114)
+|||++|++++ .++.+.||.+ .++. .. .+..+. .+.+++|+||++. ++++++.++.+++|++. .+....
T Consensus 93 spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~~-~~~~~~~spdg~~-l~~~~~~~~~~~l~~~~~~~~~~~ 166 (297)
T 2ojh_A 93 SPDGALYAISDKVEFGKSAIYLLPSTGGT-PR---LMTKNL-PSYWHGWSPDGKS-FTYCGIRDQVFDIYSMDIDSGVET 166 (297)
T ss_dssp CTTSSEEEEEECTTTSSCEEEEEETTCCC-CE---ECCSSS-SEEEEEECTTSSE-EEEEEEETTEEEEEEEETTTCCEE
T ss_pred CCCCCEEEEEEeCCCCcceEEEEECCCCc-eE---EeecCC-CccceEECCCCCE-EEEEECCCCceEEEEEECCCCcce
Confidence 99999999998 3455666655 4443 22 343333 4899999999995 34477888999999864 234456
Q ss_pred EeeccccCEEEEeeccCCCceEEEEEe-cCCeEEEEEcC-CCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEE
Q 001248 504 IFEGHEAPVYSVCPHHKENIQFIFSTA-LDGKIKAWLYD-NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581 (1114)
Q Consensus 504 ~~~~h~~~v~~~~~~~~~~~~~l~s~~-~d~~i~~wd~~-~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~ 581 (1114)
.+..|...+.+++|++ ++.+++.++ .++.+.+|+++ .......+..+...+..+.|+|+|
T Consensus 167 ~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg---------------- 228 (297)
T 2ojh_A 167 RLTHGEGRNDGPDYSP--DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSG---------------- 228 (297)
T ss_dssp ECCCSSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTS----------------
T ss_pred EcccCCCccccceECC--CCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCC----------------
Confidence 6777888999999865 456666655 58999999987 334444444444444555555554
Q ss_pred ecCCCCEEEEEeCC-----------CeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCC
Q 001248 582 FDTTKNRFLAAGDD-----------FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN 640 (1114)
Q Consensus 582 ~~~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg 640 (1114)
++|++++.+ +.|++||+.+++.........+...+.+++|+|+|+.|++++.+.
T Consensus 229 -----~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 229 -----DKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp -----SEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred -----CEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 467666654 679999998887644443222234688999999999998887653
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.4e-19 Score=219.79 Aligned_cols=285 Identities=9% Similarity=0.037 Sum_probs=188.6
Q ss_pred eEEEEEccCcceeeeccc---------CceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEE
Q 001248 754 ISRLIFTNSGNAILALAS---------NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF 824 (1114)
Q Consensus 754 i~~l~~s~~~~~l~~~~~---------dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v 824 (1114)
+.+++|||||++|+.++. ++.|++|++.. |..+.. .. ....+..+
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~----------------------g~~~~~--~~--l~~~~~~~ 115 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN----------------------GEFVRG--NE--LPRPIQYL 115 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT----------------------TEECCS--SC--CCSSBCCE
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC----------------------Cccccc--ee--cCcccccc
Confidence 668899999999988876 67888887653 332100 00 12457889
Q ss_pred EEeeCCCEEEEEeCCeEEEEEcCCCcccccc-CCCCCCe-----------------EEEEEecCCCcEEEEEeCCC----
Q 001248 825 ALSKNDSYVMSASGGKISLFNMMTFKTMATF-MPPPPAA-----------------TFLAFHPQDNNIIAIGMDDS---- 882 (1114)
Q Consensus 825 ~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~-~~~~~~i-----------------~~l~~sp~d~~~la~g~~dg---- 882 (1114)
+|||||++|+.+.++.|++|++.+++..+.. .++...| .+++||| ||+.||+++.|.
T Consensus 116 ~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~ 194 (719)
T 1z68_A 116 CWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDIP 194 (719)
T ss_dssp EECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTSC
T ss_pred eECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCCCc
Confidence 9999999999999999999999887765432 2222222 4899999 999999887652
Q ss_pred ------------------------------cEEEEEcccceEE--------EeecccccCeeEEEEcCCCCEEEEEeCCC
Q 001248 883 ------------------------------SIQIYNVRVDEVK--------SKLKGHSKRITGLAFSHALNVLVSSGADS 924 (1114)
Q Consensus 883 ------------------------------~v~iwd~~~~~~~--------~~l~~h~~~V~~l~~s~d~~~l~s~s~D~ 924 (1114)
.|++||+.+++.. ..+.+|...+.+++||||++++++....+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~ 274 (719)
T 1z68_A 195 VIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRV 274 (719)
T ss_dssp EEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESS
T ss_pred eEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccc
Confidence 7889999987642 22446888899999999988777754332
Q ss_pred ----cEEEEe----CCCCccccccccc-cCCCCCCCCCCce-----EEEEccCCcEEEE--E-eCC--eEEEEEcCCCce
Q 001248 925 ----QLCVWS----SDGWEKQKNRFLQ-IPTGRTPTAQSDT-----RVQFHQDQIHFLV--V-HET--QLAIFETTKLEC 985 (1114)
Q Consensus 925 ----~v~iwd----~~~~~~~~~~~~~-~~~~~~~~~~~i~-----~v~fspdg~~l~~--~-~d~--~i~iwd~~~~~~ 985 (1114)
.|.+|| +.+++... ... ...++. ..+. .++|+|||+.++. + .++ .|.+||+.+++.
T Consensus 275 ~~~~~l~~~d~~~~~~~g~~~~--~~~~~~~~~~---~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~ 349 (719)
T 1z68_A 275 QNVSVLSICDFREDWQTWDCPK--TQEHIEESRT---GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA 349 (719)
T ss_dssp TTEEEEEEEEECSSSSSEECCG--GGEEEEECSS---SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC
T ss_pred cCeEEEEEEcccCCCCCCceEE--EEecccccCC---ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce
Confidence 488899 77654322 110 001222 1233 7899999997655 3 333 688888877763
Q ss_pred eeeeecCCCCcCeeEEEECCCCCEEEEEEcC-----CeEEEEEcCC--Cee-eEEeCCCcccCCCCCCCCccceEEEecC
Q 001248 986 VKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAAN--LKL-RCRINPSAYLPAGVSSSNVHPLVIAAHP 1057 (1114)
Q Consensus 986 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D-----g~I~vwd~~~--~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 1057 (1114)
..+. .+...+..+.++ |++.|+..+.+ +.+++|.+.. +.. ...+... +. ++ ...+. .+.|+|
T Consensus 350 -~~lt--~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~--~~-~~-~~~~~--~~~~s~ 419 (719)
T 1z68_A 350 -IQIT--SGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCH--LR-KE-RCQYY--TASFSD 419 (719)
T ss_dssp -EECS--CSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTT--TT-TT-TBCBE--EEEECG
T ss_pred -Eecc--cCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCc--cC-CC-CCceE--EEEECC
Confidence 3333 345668888888 88888777665 7888888754 421 2222210 11 11 11133 688999
Q ss_pred CCCCeEE-EEeCC--CcEEEEeccCCC
Q 001248 1058 QEPNEFA-LGLSD--GGVHVFEPLESE 1081 (1114)
Q Consensus 1058 ~d~~~l~-s~~~D--g~v~vW~i~~~~ 1081 (1114)
|+++++ +++.+ ..+++|++.+++
T Consensus 420 -dg~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 420 -YAKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp -GGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred -CCCEEEEEcCCCCCCeEEEEECCCCC
Confidence 456655 44444 478899988776
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=6e-19 Score=218.60 Aligned_cols=334 Identities=11% Similarity=0.053 Sum_probs=219.2
Q ss_pred EEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCC-CCCcCeEEEcCCCCEEEEEeC---------CCcEEEEEccC
Q 001248 580 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG-LPASPRIRFNKDGCLLAVSTN---------DNGIKILATSD 649 (1114)
Q Consensus 580 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~s~d~~~l~~~~~---------dg~i~iwd~~~ 649 (1114)
+.|+|++. ++..+.|+.|++||+.+++....+..+.. ...+.+++|||||++|++++. ++.|++||+.+
T Consensus 21 ~~~s~dg~-~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~ 99 (719)
T 1z68_A 21 PNWISGQE-YLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN 99 (719)
T ss_dssp CEESSSSE-EEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred cEECCCCe-EEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC
Confidence 34566663 55556799999999999998777754321 013789999999999998876 67888888876
Q ss_pred CccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEE
Q 001248 650 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW 729 (1114)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw 729 (1114)
+. .....
T Consensus 100 g~-~~~~~------------------------------------------------------------------------ 106 (719)
T 1z68_A 100 GE-FVRGN------------------------------------------------------------------------ 106 (719)
T ss_dssp TE-ECCSS------------------------------------------------------------------------
T ss_pred Cc-cccce------------------------------------------------------------------------
Confidence 62 10000
Q ss_pred EeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCcccc
Q 001248 730 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 809 (1114)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~ 809 (1114)
. -...+..++|||||+.|+.+. ++.|++|++..+.... +-. .+....
T Consensus 107 ------------~-------l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~-----------l~~--~~~~~~ 153 (719)
T 1z68_A 107 ------------E-------LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQ-----------ITF--NGRENK 153 (719)
T ss_dssp ------------C-------CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEE-----------CCC--CCBTTT
T ss_pred ------------e-------cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEE-----------Eec--CCCcCC
Confidence 0 012356789999999888875 6789998875432100 000 000000
Q ss_pred ccCCCCCCC---------CCccEEEEeeCCCEEEEEe-CC----------------------------------eEEEEE
Q 001248 810 NDVTDSNPE---------EAVPCFALSKNDSYVMSAS-GG----------------------------------KISLFN 845 (1114)
Q Consensus 810 ~~~~~~~~~---------~~v~~v~~s~d~~~l~~~~-dg----------------------------------~i~iwd 845 (1114)
.+. ++. ....+++|||||++|++++ |. .|++||
T Consensus 154 -v~~--g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d 230 (719)
T 1z68_A 154 -IFN--GIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIID 230 (719)
T ss_dssp -EEE--SSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEE
T ss_pred -eEc--ccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEE
Confidence 000 011 2235899999999999887 42 789999
Q ss_pred cCCCccc--------cccCCCCCCeEEEEEecCCCcEEEEEeCC----CcEEEEE----cccceEEEee----cccccCe
Q 001248 846 MMTFKTM--------ATFMPPPPAATFLAFHPQDNNIIAIGMDD----SSIQIYN----VRVDEVKSKL----KGHSKRI 905 (1114)
Q Consensus 846 ~~~~~~~--------~~~~~~~~~i~~l~~sp~d~~~la~g~~d----g~v~iwd----~~~~~~~~~l----~~h~~~V 905 (1114)
+.+++.. ..+.+|...+..++||| |++++++.... ..|++|| +.++++...+ .+|...+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~ 309 (719)
T 1z68_A 231 TTYPAYVGPQEVPVPAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWA 309 (719)
T ss_dssp SSCHHHHCCEECCCCHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCS
T ss_pred CCCCCccceeEccCCccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceE
Confidence 9987653 23446778899999999 78887775433 2488999 8888766655 4677777
Q ss_pred e-----EEEEcCCCCEEEE--EeCCC--cEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeC---
Q 001248 906 T-----GLAFSHALNVLVS--SGADS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHE--- 972 (1114)
Q Consensus 906 ~-----~l~~s~d~~~l~s--~s~D~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d--- 972 (1114)
. .++|+|||+.|+. ...++ .|.+|++.+++. .. ...+. ..+..+.++ +++.|+. +.+
T Consensus 310 ~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-----~~-lt~~~---~~v~~~~~~-d~~~i~~~~~~~~~ 379 (719)
T 1z68_A 310 GGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-----IQ-ITSGK---WEAINIFRV-TQDSLFYSSNEFEE 379 (719)
T ss_dssp SSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-----EE-CSCSS---SCEEEEEEE-CSSEEEEEESCGGG
T ss_pred ccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-----Ee-cccCc---eEEEEEEEE-eCCEEEEEEecCCC
Confidence 7 8999999996654 44555 466677766431 11 11111 246677777 8888777 544
Q ss_pred --CeEEEEEcCC--Cce-eeeee--cCCCCcCeeEEEECCCCCEEEEEE-cC--CeEEEEEcCCCeeeEEeC
Q 001248 973 --TQLAIFETTK--LEC-VKQWV--PRESSAPITHATFSCDSQLVYACF-LD--ATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 973 --~~i~iwd~~~--~~~-~~~~~--~~~h~~~v~~l~~s~dg~~l~s~s-~D--g~I~vwd~~~~~~~~~~~ 1034 (1114)
+...+|.+.. +.. ...+. ..+|...+..+.|+||+++++..+ .+ ..+++||+.+++.+..+.
T Consensus 380 ~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~ 451 (719)
T 1z68_A 380 YPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILE 451 (719)
T ss_dssp CTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred CCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence 6788887653 321 22222 123566788999999999877543 33 468999999988665554
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-18 Score=194.05 Aligned_cols=279 Identities=13% Similarity=0.136 Sum_probs=183.1
Q ss_pred cCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeeccc---CceEEEEeecccccCCCCCccccccc
Q 001248 721 ESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS---NAIHLLWKWQRTERNSSGKATASVAP 797 (1114)
Q Consensus 721 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~ 797 (1114)
+.++.+.+|+++.... ....+.. ..+......++|+|+|+ +++++. ++.|++|++..+...
T Consensus 13 ~~~~~i~v~~~d~~tg--~~~~~~~--~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~----------- 76 (347)
T 3hfq_A 13 KTSQGIYQGTLDTTAK--TLTNDGL--LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAH----------- 76 (347)
T ss_dssp SSCCEEEEEEEETTTT--EEEEEEE--EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEE-----------
T ss_pred CCCCCEEEEEEcCCCC--eEEEeee--eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEE-----------
Confidence 3456788888875221 1111111 11345677899999999 665554 589999987532110
Q ss_pred cccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe--CCeEEEEEcCC-Cc--cccccCC---------CCCCeE
Q 001248 798 QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMT-FK--TMATFMP---------PPPAAT 863 (1114)
Q Consensus 798 ~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--dg~i~iwd~~~-~~--~~~~~~~---------~~~~i~ 863 (1114)
.+.. +. .+...+..++|+|||++|++++ ++.|.+|++.. +. .+..+.. ....+.
T Consensus 77 ---------~~~~-~~--~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~ 144 (347)
T 3hfq_A 77 ---------KLNT-VV--APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIH 144 (347)
T ss_dssp ---------EEEE-EE--EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEE
T ss_pred ---------Eeee-ee--cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCce
Confidence 0100 00 1456688999999999888887 68999999962 22 2222221 123488
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEEcc-cceEE--Eeeccc-ccCeeEEEEcCCCCEEEE-EeCCCcEEEEeCCC--Ccc
Q 001248 864 FLAFHPQDNNIIAIGMDDSSIQIYNVR-VDEVK--SKLKGH-SKRITGLAFSHALNVLVS-SGADSQLCVWSSDG--WEK 936 (1114)
Q Consensus 864 ~l~~sp~d~~~la~g~~dg~v~iwd~~-~~~~~--~~l~~h-~~~V~~l~~s~d~~~l~s-~s~D~~v~iwd~~~--~~~ 936 (1114)
+++|+| +++++++...++.|++|++. +++.. ..+..+ ...+..++|+|||++|++ ...++.|.+|+++. ++.
T Consensus 145 ~~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~ 223 (347)
T 3hfq_A 145 YTDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAF 223 (347)
T ss_dssp EEEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred EEEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCce
Confidence 999999 77777777788999999998 55433 222222 235788999999996665 56788999999874 332
Q ss_pred ccccccccCCCCCCCCCCceEEEEccCCcEEEE-E-eCCeEEEEEcCCC---ceeeeeecCCCCcCeeEEEECCCCCEEE
Q 001248 937 QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V-HETQLAIFETTKL---ECVKQWVPRESSAPITHATFSCDSQLVY 1011 (1114)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~-~d~~i~iwd~~~~---~~~~~~~~~~h~~~v~~l~~s~dg~~l~ 1011 (1114)
..................+..++|+|||++|++ . .++.|.+|++... +.+..+. .+...+..++|+|||++|+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~--~~~~~~~~~~~spdg~~l~ 301 (347)
T 3hfq_A 224 TQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIS--TEGDFPRDFDLDPTEAFVV 301 (347)
T ss_dssp EEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEE--CSSSCCCEEEECTTSSEEE
T ss_pred EEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEe--cCCCCcCeEEECCCCCEEE
Confidence 111112222211111134788999999998866 3 5789999998732 3333333 4456789999999999998
Q ss_pred EEEcC-CeEEEE--EcCCCeee
Q 001248 1012 ACFLD-ATVCVF--SAANLKLR 1030 (1114)
Q Consensus 1012 s~s~D-g~I~vw--d~~~~~~~ 1030 (1114)
+++.+ +.|.+| |..+|++.
T Consensus 302 v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 302 VVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEETTTTEEEEEEECTTTCCEE
T ss_pred EEEcCCCcEEEEEEeCCCCeEE
Confidence 88865 899999 55677765
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.82 E-value=6.2e-18 Score=193.58 Aligned_cols=259 Identities=13% Similarity=0.076 Sum_probs=170.1
Q ss_pred CCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE-
Q 001248 358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG- 436 (1114)
Q Consensus 358 ~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la- 436 (1114)
...++.+++++++.+ +++|+.++ |+||+......... ...+.. ............|...|.+++|+|||++||
T Consensus 36 ~~~~n~lavs~~~~~-l~~~~~dg-v~v~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~v~~l~~spdg~~lav 109 (434)
T 2oit_A 36 KERSSLLAVSNKYGL-VFAGGASG-LQIFPTKNLLIQNK---PGDDPN-KIVDKVQGLLVPMKFPIHHLALSCDNLTLSA 109 (434)
T ss_dssp CSCCBCEEEETTTTE-EEEEETTE-EEEEEHHHHCCCCC---TTCCTT-CEEECCCCEEECCSSCEEEEEECTTSCEEEE
T ss_pred CCCccEEEEecCCCE-EEEECCCE-EEEEEchHhhhhcc---cccCcc-cccccCccccccCCCcccEEEEcCCCCEEEE
Confidence 346899999999995 88888787 99988643211000 000000 000001111234667899999999999999
Q ss_pred ---EEeCCCeEEEEEccCC--------ceeeeeEeeccccCCeeEEEecCC-CCeeEEEEecCCCCEEEEeCCCCcceeE
Q 001248 437 ---VAYSRHIVQIYSYHGG--------DEVRQHLEIDAHVGGVNDIAFSHP-NKQLCVITCGDDKTIKVWDATNGAKQYI 504 (1114)
Q Consensus 437 ---s~~~dg~i~iwd~~~~--------~~~~~~~~l~~h~~~V~~v~~s~d-~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 504 (1114)
+|+.|+.|+|||+.++ +.+.....+.+|...|.+++|+|+ +. +|++++.|++|++||++++..+..
T Consensus 110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~~~~ 187 (434)
T 2oit_A 110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVKVCA 187 (434)
T ss_dssp EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEEEEE
T ss_pred EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcceee
Confidence 7888999999999865 223334467789999999999998 55 799999999999999999987777
Q ss_pred eeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCC-------CeeEEEEEecCCCeEEeeecccce
Q 001248 505 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG-------RWCTTMAYSADGTRTYQGFRKRSL 577 (1114)
Q Consensus 505 ~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-------~~v~~~~~s~~g~~~~~~~~~~~v 577 (1114)
..+|...|.+++|+++ |++|++|+.||.|++||.+ ......+..+. ..+.+++|++++
T Consensus 188 ~~~~~~~v~~v~wspd--g~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~------------ 252 (434)
T 2oit_A 188 TLPSTVAVTSVCWSPK--GKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTY------------ 252 (434)
T ss_dssp EECGGGCEEEEEECTT--SSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETT------------
T ss_pred ccCCCCceeEEEEcCC--CCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCc------------
Confidence 7789999999998764 6899999999999999998 33333333221 145555555544
Q ss_pred eEEEecCCCCEEEE-EeCCC------eEEEEECCCcc-----eEEEeccC-----CCCCCcCeEEEcCCCCEEEEEeC-C
Q 001248 578 GVVQFDTTKNRFLA-AGDDF------SIKFWDMDSVQ-----LLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTN-D 639 (1114)
Q Consensus 578 ~~~~~~~~~~~l~~-~~~dg------~i~iwd~~~~~-----~~~~~~~~-----~~~~~v~~~~~s~d~~~l~~~~~-d 639 (1114)
.++++ ...+| .+++|++.... ....+... ....+...+.+-++.+++++++. .
T Consensus 253 ---------~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s 323 (434)
T 2oit_A 253 ---------VFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAAS 323 (434)
T ss_dssp ---------EEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTC
T ss_pred ---------eEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCC
Confidence 34443 33343 38999987642 11222111 11111122333367677666554 4
Q ss_pred CcEEEEEcc
Q 001248 640 NGIKILATS 648 (1114)
Q Consensus 640 g~i~iwd~~ 648 (1114)
+.|.++...
T Consensus 324 ~dv~vl~~~ 332 (434)
T 2oit_A 324 TEVSILARQ 332 (434)
T ss_dssp SBCEEEEEC
T ss_pred CceeEEEec
Confidence 557776643
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-18 Score=193.42 Aligned_cols=241 Identities=13% Similarity=0.089 Sum_probs=180.7
Q ss_pred EEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCC-CCeEEEEEecCCCcE-EEEEeCCCcEEEEEcccceEEEeec
Q 001248 823 CFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNI-IAIGMDDSSIQIYNVRVDEVKSKLK 899 (1114)
Q Consensus 823 ~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~-la~g~~dg~v~iwd~~~~~~~~~l~ 899 (1114)
.++++++++++++++ +++|++||..+++.+..+..+. ..+..++|+| ++++ ++++..++.|++||+.+++.+..+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 345677888888888 8999999999998887776443 2578999999 7765 4556678999999999998877765
Q ss_pred cc------ccCeeEEEEcCCCCEEEEEeCC------------CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEc
Q 001248 900 GH------SKRITGLAFSHALNVLVSSGAD------------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH 961 (1114)
Q Consensus 900 ~h------~~~V~~l~~s~d~~~l~s~s~D------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fs 961 (1114)
.+ ...+.+++|+|||++|++++.+ +.|.+||+.+++.... +...... ..+.+++|+
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~--~~~~~~~----~~~~~~~~s 156 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP--VRTFPMP----RQVYLMRAA 156 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCC--SEEEECC----SSCCCEEEC
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccce--eeeccCC----CcccceeEC
Confidence 32 2347899999999999998866 8999999987543221 1111111 247889999
Q ss_pred cCCcEEEEEeCCeEEEEEcCCCceeeeeecCC------------------------------------------------
Q 001248 962 QDQIHFLVVHETQLAIFETTKLECVKQWVPRE------------------------------------------------ 993 (1114)
Q Consensus 962 pdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~------------------------------------------------ 993 (1114)
|||+ ++++ ++.|.+||..+++.+..+....
T Consensus 157 ~dg~-l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 234 (349)
T 1jmx_B 157 DDGS-LYVA-GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 234 (349)
T ss_dssp TTSC-EEEE-SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred CCCc-EEEc-cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence 9999 5553 4459999999988776554321
Q ss_pred ------------------CCcCeeEEEECC-CCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEE
Q 001248 994 ------------------SSAPITHATFSC-DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIA 1054 (1114)
Q Consensus 994 ------------------h~~~v~~l~~s~-dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 1054 (1114)
+...+.+++|+| ||++|+++ ++.|++||+.+++.+..+. .+.. + ..++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~----~~~~-----~--~~~~ 301 (349)
T 1jmx_B 235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN----LDHT-----Y--YCVA 301 (349)
T ss_dssp EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE----CSSC-----C--CEEE
T ss_pred EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc----CCCC-----c--cceE
Confidence 011456778889 99999888 8899999999999887765 1111 3 3799
Q ss_pred ecCCCCCeEEEEeCCCcEEEEeccCCCCcccC
Q 001248 1055 AHPQEPNEFALGLSDGGVHVFEPLESEGKWGV 1086 (1114)
Q Consensus 1055 ~~~~d~~~l~s~~~Dg~v~vW~i~~~~~~~~~ 1086 (1114)
|+| |+++|++++.++.|++||+.+++..-..
T Consensus 302 ~s~-dg~~l~~~~~~~~v~v~d~~~~~~~~~~ 332 (349)
T 1jmx_B 302 FDK-KGDKLYLGGTFNDLAVFNPDTLEKVKNI 332 (349)
T ss_dssp ECS-SSSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred ECC-CCCEEEEecCCCeEEEEeccccceeeee
Confidence 999 6788888889999999999998843333
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.81 E-value=7.7e-18 Score=208.30 Aligned_cols=234 Identities=13% Similarity=0.099 Sum_probs=158.6
Q ss_pred CCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCC-----CeeEEEEcCCCC
Q 001248 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV-----SVNRVIWSPDGS 433 (1114)
Q Consensus 359 ~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~-----~V~~l~~spdg~ 433 (1114)
.....++|+|||++ ++++ ||+|++||+.+++... ++.+|.. ....++|||||+
T Consensus 17 ~~~~~~~w~~dg~~-~~~~--~~~i~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~Spdg~ 74 (740)
T 4a5s_A 17 LKLYSLRWISDHEY-LYKQ--ENNILVFNAEYGNSSV-------------------FLENSTFDEFGHSINDYSISPDGQ 74 (740)
T ss_dssp CCCCCEEECSSSEE-EEEE--TTEEEEEETTTCCEEE-------------------EECTTTTTTCCSCCCEEEECTTSS
T ss_pred ccccccEECCCCcE-EEEc--CCcEEEEECCCCceEE-------------------EEechhhhhhcccccceEECCCCC
Confidence 34568999999984 7775 9999999999998654 2344432 334589999999
Q ss_pred eEEEEeCC---------CeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCccee-
Q 001248 434 LFGVAYSR---------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY- 503 (1114)
Q Consensus 434 ~las~~~d---------g~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~- 503 (1114)
+|++++.+ +.+.+||+.+++.. .+..|.+.+..++|||||+. |+.+ .|+.|++||+.+++..+
T Consensus 75 ~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~----~l~~~~~~~~~~~~SPdG~~--la~~-~~~~i~~~~~~~~~~~~l 147 (740)
T 4a5s_A 75 FILLEYNYVKQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGHK--LAYV-WNNDIYVKIEPNLPSYRI 147 (740)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTTC--EEEE-ETTEEEEESSTTSCCEEC
T ss_pred EEEEEECCeeeEEEccceEEEEEECCCCcEE----EcccCCCcceeeEECCCCCE--EEEE-ECCeEEEEECCCCceEEE
Confidence 99999876 56679999998754 36678889999999999994 5555 46899999998887544
Q ss_pred EeeccccCE-----------------EEEeeccCCCceEEEEEecCCe-EEEEEcCCCCCeeeecCCCCeeEEEEEecCC
Q 001248 504 IFEGHEAPV-----------------YSVCPHHKENIQFIFSTALDGK-IKAWLYDNLGSRVDYEAPGRWCTTMAYSADG 565 (1114)
Q Consensus 504 ~~~~h~~~v-----------------~~~~~~~~~~~~~l~s~~~d~~-i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g 565 (1114)
+..++...+ ..+.| ++||+.|+.++.|.+ +.+|++....... .+...+..+.+.+.|
T Consensus 148 t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~w--SpDg~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G 222 (740)
T 4a5s_A 148 TWTGKEDIIYNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAG 222 (740)
T ss_dssp CSCCBTTTEEESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTT
T ss_pred cCCCCccceecCcccccccchhcCCCcceEE--CCCCCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCc
Confidence 223333333 23566 566788888876544 8888764321110 122344555555555
Q ss_pred CeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCC---cc--eEEEeccC----CCCCCcCeEEEcCCCCEEEEE
Q 001248 566 TRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS---VQ--LLTSIDAD----GGLPASPRIRFNKDGCLLAVS 636 (1114)
Q Consensus 566 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~--~~~~~~~~----~~~~~v~~~~~s~d~~~l~~~ 636 (1114)
. . .....|++||+.+ ++ ....+... ++...+..++|+|||+.++..
T Consensus 223 ~---------------------~----~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~ 277 (740)
T 4a5s_A 223 A---------------------V----NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQW 277 (740)
T ss_dssp S---------------------C----CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEE
T ss_pred C---------------------c----CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEE
Confidence 3 1 1223789999998 73 22333321 123457899999999977665
Q ss_pred eC----CCcEEEEEccCCc
Q 001248 637 TN----DNGIKILATSDGI 651 (1114)
Q Consensus 637 ~~----dg~i~iwd~~~~~ 651 (1114)
.. +..|.+||+.++.
T Consensus 278 ~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 278 LRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp EESSTTEEEEEEEEEETTT
T ss_pred eCCCCCEEEEEEEECCCCc
Confidence 43 2368999988873
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-18 Score=209.35 Aligned_cols=234 Identities=10% Similarity=0.047 Sum_probs=168.2
Q ss_pred CCCCceEEEEcCCCCeEEEEEec-CCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCC-CCeeEEEEcCCCCe
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTN-VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG-VSVNRVIWSPDGSL 434 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~-dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~ 434 (1114)
+..+|++++|||||++ ||+++. ||++.||++.+++... +..|. ..|..++|||| ++
T Consensus 20 ~~~~~~~~~~~~DG~~-la~~s~~~g~~~lw~~~~g~~~~--------------------lt~~~~~~~~~~~~spd-~~ 77 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDK-LLVVGFSEGSVNAYLYDGGETVK--------------------LNREPINSVLDPHYGVG-RV 77 (582)
T ss_dssp HHSCEEEEEEEETTTE-EEEEEEETTEEEEEEEETTEEEE--------------------CCSSCCSEECEECTTCS-EE
T ss_pred hccchheeecCCCCCe-EEEEEccCCceeEEEEcCCCcEe--------------------eecccccccccccCCCC-eE
Confidence 3567999999999997 555554 9999999997765543 34444 68999999999 77
Q ss_pred EEEEeC---CCeEEEEEccC--CceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccc
Q 001248 435 FGVAYS---RHIVQIYSYHG--GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE 509 (1114)
Q Consensus 435 las~~~---dg~i~iwd~~~--~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~ 509 (1114)
+++++. +....||.+.. ..... .+..+. .+...+|+|||+.+++++++.++ +.+||+.+++.......+
T Consensus 78 l~~~~~~~g~~~~~l~~~~~~~~g~~~---~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~~~l~~~~- 151 (582)
T 3o4h_A 78 ILVRDVSKGAEQHALFKVNTSRPGEEQ---RLEAVK-PMRILSGVDTGEAVVFTGATEDR-VALYALDGGGLRELARLP- 151 (582)
T ss_dssp EEEEECSTTSCCEEEEEEETTSTTCCE---ECTTSC-SBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEEEEEEEES-
T ss_pred EEEeccCCCCcceEEEEEeccCCCccc---cccCCC-CceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcEEEeecCC-
Confidence 777765 45567766654 22222 232222 34567999999875666666555 459999988765544433
Q ss_pred cCEEEEeeccCCCceEEEEEecC----CeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCC
Q 001248 510 APVYSVCPHHKENIQFIFSTALD----GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 585 (1114)
Q Consensus 510 ~~v~~~~~~~~~~~~~l~s~~~d----~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~ 585 (1114)
. .+++| ++||++|++++.+ +.|++||+.+++.. .+..+...+..++|+|||+
T Consensus 152 ~--~~~~~--spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~------------------- 207 (582)
T 3o4h_A 152 G--FGFVS--DIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMK------------------- 207 (582)
T ss_dssp S--CEEEE--EEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSC-------------------
T ss_pred C--ceEEE--CCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCC-------------------
Confidence 3 56665 4567899988877 78999999876544 4555556666666666665
Q ss_pred CCEEEEEeCCC--eEEEEECCCcceEEEeccCCCCCCcCeEE--------EcCCCCEEEEEeCCCcEEEEEc
Q 001248 586 KNRFLAAGDDF--SIKFWDMDSVQLLTSIDADGGLPASPRIR--------FNKDGCLLAVSTNDNGIKILAT 647 (1114)
Q Consensus 586 ~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~--------~s~d~~~l~~~~~dg~i~iwd~ 647 (1114)
+|+++..++ .|++||+.+++.. .+..+ ...+..++ |+|||.++++++.++.+++|++
T Consensus 208 --~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 208 --VTAGLETAREARLVTVDPRDGSVE-DLELP--SKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp --EEEEEECSSCEEEEEECTTTCCEE-ECCCS--CSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred --EEEEccCCCeeEEEEEcCCCCcEE-EccCC--CcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 677777788 8999999998877 55443 23456667 9999999999999999999997
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.81 E-value=8.2e-17 Score=181.02 Aligned_cols=166 Identities=10% Similarity=0.084 Sum_probs=116.1
Q ss_pred CCCeEEEEEecCCCcEEEE-EeCCCcEEEEEcccce-------E------EEeecccccCeeEEEEcCCCCEEEEEe-CC
Q 001248 859 PPAATFLAFHPQDNNIIAI-GMDDSSIQIYNVRVDE-------V------KSKLKGHSKRITGLAFSHALNVLVSSG-AD 923 (1114)
Q Consensus 859 ~~~i~~l~~sp~d~~~la~-g~~dg~v~iwd~~~~~-------~------~~~l~~h~~~V~~l~~s~d~~~l~s~s-~D 923 (1114)
...+.+++|+| ++++|++ ...++.|++|++.... + ......+...+.+++|+|||++|++++ .+
T Consensus 154 ~~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~ 232 (361)
T 3scy_A 154 MPHLHCVRITP-DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIG 232 (361)
T ss_dssp SCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT
T ss_pred CCcceEEEECC-CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCC
Confidence 34578899999 8875554 4458899999987533 1 111223445678999999999887777 68
Q ss_pred CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-e--CCeEEEEEcC--CCc--eeeeeecCCCCc
Q 001248 924 SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H--ETQLAIFETT--KLE--CVKQWVPRESSA 996 (1114)
Q Consensus 924 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~--d~~i~iwd~~--~~~--~~~~~~~~~h~~ 996 (1114)
+.|.+|++.+++......+.....+. .....++|+|||++|+++ . ++.|.+|++. +++ .+..+. . ..
T Consensus 233 ~~v~v~~~~~g~~~~~~~~~~~~~~~---~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~--~-g~ 306 (361)
T 3scy_A 233 GTVIAFRYADGMLDEIQTVAADTVNA---QGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL--T-GI 306 (361)
T ss_dssp CEEEEEEEETTEEEEEEEEESCSSCC---CCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE--C-SS
T ss_pred CeEEEEEecCCceEEeEEEecCCCCC---CCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec--C-CC
Confidence 99999999865432222222222221 245799999999999774 3 4789999985 444 333333 2 45
Q ss_pred CeeEEEECCCCCEEEEEE-cCCeEEEEEc--CCCeeeE
Q 001248 997 PITHATFSCDSQLVYACF-LDATVCVFSA--ANLKLRC 1031 (1114)
Q Consensus 997 ~v~~l~~s~dg~~l~s~s-~Dg~I~vwd~--~~~~~~~ 1031 (1114)
.+.+++|+|||++|++++ .++.|.+|++ .++++..
T Consensus 307 ~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~ 344 (361)
T 3scy_A 307 HPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTD 344 (361)
T ss_dssp CCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred CCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEee
Confidence 788999999999998888 5789999654 5776653
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-17 Score=205.44 Aligned_cols=365 Identities=12% Similarity=0.048 Sum_probs=222.6
Q ss_pred CeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEe---eccCCCceEEEEEecC---------Ce
Q 001248 467 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC---PHHKENIQFIFSTALD---------GK 534 (1114)
Q Consensus 467 ~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~---~~~~~~~~~l~s~~~d---------~~ 534 (1114)
...+++|+|||+ +++++ |++|++||+.++++...+.+|......++ +..++||++|+.++.+ +.
T Consensus 18 ~~~~~~w~~dg~--~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 18 KLYSLRWISDHE--YLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp CCCCEEECSSSE--EEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred cccccEECCCCc--EEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence 466899999998 67776 89999999999998888888765432221 1235677899988876 55
Q ss_pred EEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEecc
Q 001248 535 IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA 614 (1114)
Q Consensus 535 i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 614 (1114)
+.+||+.+++.. .+..+...+...+|||||+ .|+.+ .++.|++|+..+++... +..
T Consensus 94 ~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~---------------------~la~~-~~~~i~~~~~~~~~~~~-lt~ 149 (740)
T 4a5s_A 94 YDIYDLNKRQLI-TEERIPNNTQWVTWSPVGH---------------------KLAYV-WNNDIYVKIEPNLPSYR-ITW 149 (740)
T ss_dssp EEEEETTTTEEC-CSSCCCTTEEEEEECSSTT---------------------CEEEE-ETTEEEEESSTTSCCEE-CCS
T ss_pred EEEEECCCCcEE-EcccCCCcceeeEECCCCC---------------------EEEEE-ECCeEEEEECCCCceEE-EcC
Confidence 679999876533 3334444566666666665 56665 46899999998887543 222
Q ss_pred CCCC-----------------CCcCeEEEcCCCCEEEEEeCCCc-EEEEEccCCccceeeccccccccccCCCCCCCCcc
Q 001248 615 DGGL-----------------PASPRIRFNKDGCLLAVSTNDNG-IKILATSDGIRLLRTFENLAYDASRTSENSKPTIS 676 (1114)
Q Consensus 615 ~~~~-----------------~~v~~~~~s~d~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (1114)
.++. .....+.|||||+.|+.++.|.+ +.+|++......
T Consensus 150 ~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~----------------------- 206 (740)
T 4a5s_A 150 TGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDE----------------------- 206 (740)
T ss_dssp CCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCST-----------------------
T ss_pred CCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCC-----------------------
Confidence 2211 11234778888887777654433 555543211000
Q ss_pred chhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEE
Q 001248 677 PISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISR 756 (1114)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~ 756 (1114)
. .+...+..
T Consensus 207 -------------------------------------------------------------~----------~~~~~~~~ 215 (740)
T 4a5s_A 207 -------------------------------------------------------------S----------LQYPKTVR 215 (740)
T ss_dssp -------------------------------------------------------------T----------CSSCEEEE
T ss_pred -------------------------------------------------------------C----------CCCCccee
Confidence 0 01111222
Q ss_pred EEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEE
Q 001248 757 LIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA 836 (1114)
Q Consensus 757 l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~ 836 (1114)
+. +.+.|.. .
T Consensus 216 ~~-------------------------------------------------------------------yp~~G~~---~ 225 (740)
T 4a5s_A 216 VP-------------------------------------------------------------------YPKAGAV---N 225 (740)
T ss_dssp EE-------------------------------------------------------------------CCBTTSC---C
T ss_pred ec-------------------------------------------------------------------CCCCcCc---C
Confidence 22 2222211 0
Q ss_pred eCCeEEEEEcCC---Cc--cccccC------CCCCCeEEEEEecCCCcEEEEEeC----CCcEEEEEcccce----EEE-
Q 001248 837 SGGKISLFNMMT---FK--TMATFM------PPPPAATFLAFHPQDNNIIAIGMD----DSSIQIYNVRVDE----VKS- 896 (1114)
Q Consensus 837 ~dg~i~iwd~~~---~~--~~~~~~------~~~~~i~~l~~sp~d~~~la~g~~----dg~v~iwd~~~~~----~~~- 896 (1114)
...+|++||+.+ ++ ....+. ++...+..++|+| ||++++.... +..|++||+.+++ +..
T Consensus 226 ~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~ 304 (740)
T 4a5s_A 226 PTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVA 304 (740)
T ss_dssp CEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGG
T ss_pred CeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEE
Confidence 012577788777 63 122232 3677799999999 8887665533 3479999999887 322
Q ss_pred -ee--cccccCee-----EEEEcCCCCEEE-EEeC-C--CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCC
Q 001248 897 -KL--KGHSKRIT-----GLAFSHALNVLV-SSGA-D--SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ 964 (1114)
Q Consensus 897 -~l--~~h~~~V~-----~l~~s~d~~~l~-s~s~-D--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg 964 (1114)
.+ .+|...|. .++|+|||+.|+ ..+. + ..|.+|++.+++. ..+..+.. .+..+. .+|+
T Consensus 305 ~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~-----~~lT~g~~----~v~~~~-~~d~ 374 (740)
T 4a5s_A 305 RQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC-----TFITKGTW----EVIGIE-ALTS 374 (740)
T ss_dssp GCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC-----EESCCSSS----CEEEEE-EECS
T ss_pred EEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce-----EecccCCE----EEEEEE-EEeC
Confidence 22 44665554 789999999887 6654 3 3588888887543 22222221 344433 3557
Q ss_pred cEEEE-EeC-----C--eEEEEEcCCCceeeeeec--CCCCcCeeEEEECCCCCEEEEEEcC---CeEEEEEcCCCeeeE
Q 001248 965 IHFLV-VHE-----T--QLAIFETTKLECVKQWVP--RESSAPITHATFSCDSQLVYACFLD---ATVCVFSAANLKLRC 1031 (1114)
Q Consensus 965 ~~l~~-~~d-----~--~i~iwd~~~~~~~~~~~~--~~h~~~v~~l~~s~dg~~l~s~s~D---g~I~vwd~~~~~~~~ 1031 (1114)
+.|+. +.. + .|...++.++.....+.. .+....+..+.||||+++++..... ..+.+++..+++.+.
T Consensus 375 ~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~ 454 (740)
T 4a5s_A 375 DYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLR 454 (740)
T ss_dssp SEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEE
T ss_pred CEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEE
Confidence 77766 433 2 455556655443222321 1234578899999999987765544 368899998887765
Q ss_pred EeC
Q 001248 1032 RIN 1034 (1114)
Q Consensus 1032 ~~~ 1034 (1114)
.+.
T Consensus 455 ~l~ 457 (740)
T 4a5s_A 455 VLE 457 (740)
T ss_dssp EEE
T ss_pred Eec
Confidence 543
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.8e-18 Score=206.62 Aligned_cols=271 Identities=10% Similarity=0.055 Sum_probs=186.0
Q ss_pred ccCCeeEEEecCCCCeeEEEEecC-CCCEEEEeCCCCcceeEeeccc-cCEEEEeeccCCCceEEEEEec---CCeEEEE
Q 001248 464 HVGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEGHE-APVYSVCPHHKENIQFIFSTAL---DGKIKAW 538 (1114)
Q Consensus 464 h~~~V~~v~~s~d~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~~~---d~~i~~w 538 (1114)
+..+|++++|+|||+ .|++++. |++++||++.+++. ..+..|. ..+..++|++ | +++++++. +....+|
T Consensus 20 ~~~~~~~~~~~~DG~--~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~sp--d-~~l~~~~~~~g~~~~~l~ 93 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGD--KLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGV--G-RVILVRDVSKGAEQHALF 93 (582)
T ss_dssp HHSCEEEEEEEETTT--EEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTC--S-EEEEEEECSTTSCCEEEE
T ss_pred hccchheeecCCCCC--eEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCC--C-eEEEEeccCCCCcceEEE
Confidence 356899999999999 5777665 99999999866654 4555555 6888889874 4 67777765 5556676
Q ss_pred EcCC--CCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCC
Q 001248 539 LYDN--LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG 616 (1114)
Q Consensus 539 d~~~--~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 616 (1114)
.++. ......+... ..+...+|+|+|+. .+++.+.++.+.+||+.+++.......+.
T Consensus 94 ~~~~~~~g~~~~l~~~-~~~~~~~~s~dg~~--------------------~~~~s~~~~~~~l~d~~~g~~~~l~~~~~ 152 (582)
T 3o4h_A 94 KVNTSRPGEEQRLEAV-KPMRILSGVDTGEA--------------------VVFTGATEDRVALYALDGGGLRELARLPG 152 (582)
T ss_dssp EEETTSTTCCEECTTS-CSBEEEEEEECSSC--------------------EEEEEECSSCEEEEEEETTEEEEEEEESS
T ss_pred EEeccCCCccccccCC-CCceeeeeCCCCCe--------------------EEEEecCCCCceEEEccCCcEEEeecCCC
Confidence 6544 3322222221 12234455555542 23344444555599999887666554331
Q ss_pred CCCCcCeEEEcCCCCEEEEEeCC----CcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccc
Q 001248 617 GLPASPRIRFNKDGCLLAVSTND----NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLA 692 (1114)
Q Consensus 617 ~~~~v~~~~~s~d~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1114)
.+++|+|||++|++++.+ +.|++||+.++. .. .+.
T Consensus 153 -----~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~-~~-~l~---------------------------------- 191 (582)
T 3o4h_A 153 -----FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG-LR-VFD---------------------------------- 191 (582)
T ss_dssp -----CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC-CE-EEC----------------------------------
T ss_pred -----ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC-ce-Eee----------------------------------
Confidence 789999999999988766 567777765551 00 000
Q ss_pred cccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccC
Q 001248 693 DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN 772 (1114)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d 772 (1114)
T Consensus 192 -------------------------------------------------------------------------------- 191 (582)
T 3o4h_A 192 -------------------------------------------------------------------------------- 191 (582)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CC--eEEEEEcCCC
Q 001248 773 AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GG--KISLFNMMTF 849 (1114)
Q Consensus 773 g~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg--~i~iwd~~~~ 849 (1114)
.+...+..++|||||++|+++. ++ .|++||+.++
T Consensus 192 -------------------------------------------~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~ 228 (582)
T 3o4h_A 192 -------------------------------------------SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG 228 (582)
T ss_dssp -------------------------------------------CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC
T ss_pred -------------------------------------------cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC
Confidence 0333445677777777777555 56 7888888887
Q ss_pred ccccccCCCCCCeEEEE--------EecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEe
Q 001248 850 KTMATFMPPPPAATFLA--------FHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG 921 (1114)
Q Consensus 850 ~~~~~~~~~~~~i~~l~--------~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s 921 (1114)
+.. .+..+...+..++ |+| ||.++++++.||++++|++ ++... .+.+.|.+++|+ |++++++++
T Consensus 229 ~~~-~~~~~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s 300 (582)
T 3o4h_A 229 SVE-DLELPSKDFSSYRPTAITWLGYLP-DGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHT 300 (582)
T ss_dssp CEE-ECCCSCSHHHHHCCSEEEEEEECT-TSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEE
T ss_pred cEE-EccCCCcChhhhhhccccceeEcC-CCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEc
Confidence 776 6666766676667 999 7799999999999999999 66554 344678999999 999999988
Q ss_pred CCCc---EEEEeCCC
Q 001248 922 ADSQ---LCVWSSDG 933 (1114)
Q Consensus 922 ~D~~---v~iwd~~~ 933 (1114)
.+.+ +.+|+..+
T Consensus 301 ~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 301 SLSTPPRIVSLPSGE 315 (582)
T ss_dssp ETTEEEEEEEETTCC
T ss_pred CCCCCCeEEEEcCCC
Confidence 8754 66666654
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-17 Score=187.34 Aligned_cols=250 Identities=10% Similarity=0.081 Sum_probs=169.6
Q ss_pred CCccEEEEeeCCCEEEEEeCCeEEEEEcC-CCccccccCC-CCCCeEEEEEecCCCc--EEEEEe-------------CC
Q 001248 819 EAVPCFALSKNDSYVMSASGGKISLFNMM-TFKTMATFMP-PPPAATFLAFHPQDNN--IIAIGM-------------DD 881 (1114)
Q Consensus 819 ~~v~~v~~s~d~~~l~~~~dg~i~iwd~~-~~~~~~~~~~-~~~~i~~l~~sp~d~~--~la~g~-------------~d 881 (1114)
..+..++++|||++|++++.+.|.+|++. +++....... ..+.+.+++|+| +|+ +++++. .+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecCC
Confidence 46788999999999998884499999997 7665433221 112356689999 888 455553 68
Q ss_pred CcEEEEEcc-cceEEEeec----ccccCeeEEEEcCCCCEEEEEeC-CCcEEEEeCC-CCccccccccccCCCCCCCCCC
Q 001248 882 SSIQIYNVR-VDEVKSKLK----GHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSD-GWEKQKNRFLQIPTGRTPTAQS 954 (1114)
Q Consensus 882 g~v~iwd~~-~~~~~~~l~----~h~~~V~~l~~s~d~~~l~s~s~-D~~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~ 954 (1114)
|.+.+|++. +++....+. .+...+.+++|+|||++|++++. ++.|++|+++ +++......+.... + ...
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-~---g~~ 194 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-P---GDH 194 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-T---TCC
T ss_pred ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC-C---CCC
Confidence 999999997 466544443 24567999999999998887764 6789999998 55432111111111 0 125
Q ss_pred ceEEEEccCCcEEEEE--eCCeEEEEEcC--CCceee---eee-cC----CCCc------CeeEEE-ECCCCCEEEEEEc
Q 001248 955 DTRVQFHQDQIHFLVV--HETQLAIFETT--KLECVK---QWV-PR----ESSA------PITHAT-FSCDSQLVYACFL 1015 (1114)
Q Consensus 955 i~~v~fspdg~~l~~~--~d~~i~iwd~~--~~~~~~---~~~-~~----~h~~------~v~~l~-~s~dg~~l~s~s~ 1015 (1114)
+..++|+|||++|+++ .++.|.+|+.. +++... .+. .. +|.. .+..++ |+|||++|++++.
T Consensus 195 p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~ 274 (365)
T 1jof_A 195 PRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR 274 (365)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred CCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC
Confidence 7899999999999884 36789999765 555421 121 11 2222 588999 9999999987765
Q ss_pred CC------eEEEEEcC-CCeeeEEeCCCcccCCCCCCCCccceEEEecCC--CCCeEEEEeCC-CcEEEEeccCC
Q 001248 1016 DA------TVCVFSAA-NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ--EPNEFALGLSD-GGVHVFEPLES 1080 (1114)
Q Consensus 1016 Dg------~I~vwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--d~~~l~s~~~D-g~v~vW~i~~~ 1080 (1114)
+. .|.+|+++ ++++..... ..+ .+ . ..+..++|+|. |+++|++++.+ ++|.+|++...
T Consensus 275 ~~~~~~~~~i~v~~~~~~g~~~~~~~---~~~-~~-~--~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 275 ANKFELQGYIAGFKLRDCGSIEKQLF---LSP-TP-T--SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ESSTTSCCEEEEEEECTTSCEEEEEE---EEE-CS-S--CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCCeEEEEEECCCCCEEEeee---eee-cC-C--CCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 33 89999996 676543211 000 00 0 11225788885 58899988865 99999999775
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.79 E-value=7.1e-17 Score=181.56 Aligned_cols=243 Identities=14% Similarity=0.147 Sum_probs=164.5
Q ss_pred CCCCccEEEEeeCCCEEEEEe-C----CeEEEEEcCC--Ccc--ccccCCCCCCeEEEEEecCCCcEEEEE-eCCCcEEE
Q 001248 817 PEEAVPCFALSKNDSYVMSAS-G----GKISLFNMMT--FKT--MATFMPPPPAATFLAFHPQDNNIIAIG-MDDSSIQI 886 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~~l~~~~-d----g~i~iwd~~~--~~~--~~~~~~~~~~i~~l~~sp~d~~~la~g-~~dg~v~i 886 (1114)
+...+..++|+|||++|++++ + +.|.+|++.. ++. +.....+......+++ ++++|+++ ..++.|.+
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~---dg~~l~~~~~~~~~v~~ 124 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT---NGKNIVTANYSGGSITV 124 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE---CSSEEEEEETTTTEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE---CCCEEEEEECCCCEEEE
Confidence 345677899999999999888 4 6999998865 332 2333434556777777 44555544 47889999
Q ss_pred EEcccceEEEee------cc--------cccCeeEEEEcCCCCEEEEEe-CCCcEEEEeCCCCcc------ccc----cc
Q 001248 887 YNVRVDEVKSKL------KG--------HSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEK------QKN----RF 941 (1114)
Q Consensus 887 wd~~~~~~~~~l------~~--------h~~~V~~l~~s~d~~~l~s~s-~D~~v~iwd~~~~~~------~~~----~~ 941 (1114)
|++.....+..+ .+ +...+.+++|+|||++|++++ .++.|.+|+++.... ... ..
T Consensus 125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~ 204 (361)
T 3scy_A 125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEA 204 (361)
T ss_dssp EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEE
T ss_pred EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccc
Confidence 999754322211 11 223457899999999776555 588999999886432 100 11
Q ss_pred cccCCCCCCCCCCceEEEEccCCcEEEEE--eCCeEEEEEcCCCcee--eeee-cCCCCcCeeEEEECCCCCEEEEEEcC
Q 001248 942 LQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLECV--KQWV-PRESSAPITHATFSCDSQLVYACFLD 1016 (1114)
Q Consensus 942 ~~~~~~~~~~~~~i~~v~fspdg~~l~~~--~d~~i~iwd~~~~~~~--~~~~-~~~h~~~v~~l~~s~dg~~l~s~s~D 1016 (1114)
.....+ ..+..++|+|||++++++ .++.|.+|++.+++.. ..+. ...+...+..++|+|||++|++++.+
T Consensus 205 ~~~~~~-----~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~ 279 (361)
T 3scy_A 205 FKVAPG-----SGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL 279 (361)
T ss_dssp EECCTT-----CCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS
T ss_pred eecCCC-----CCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCC
Confidence 111111 246889999999988874 4789999999877542 2222 12334567899999999999777765
Q ss_pred --CeEEEEEcC--CCee--eEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEe-CCCcEEEEeccC
Q 001248 1017 --ATVCVFSAA--NLKL--RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL-SDGGVHVFEPLE 1079 (1114)
Q Consensus 1017 --g~I~vwd~~--~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~-~Dg~v~vW~i~~ 1079 (1114)
+.|.+|+++ ++++ +..+. .+ ..+..++|+| |+++|++++ .++.|.+|++..
T Consensus 280 ~~~~i~v~~~~~~~g~~~~~~~~~------~g-----~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 280 KADGVAIFKVDETNGTLTKVGYQL------TG-----IHPRNFIITP-NGKYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp SSCEEEEEEECTTTCCEEEEEEEE------CS-----SCCCEEEECT-TSCEEEEEETTTTEEEEEEECT
T ss_pred CCCEEEEEEEcCCCCcEEEeeEec------CC-----CCCceEEECC-CCCEEEEEECCCCCEEEEEEEC
Confidence 899999996 4553 33332 12 2344899999 688888777 679999976654
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.78 E-value=5.3e-17 Score=181.68 Aligned_cols=261 Identities=11% Similarity=0.081 Sum_probs=181.0
Q ss_pred eEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEE-EeC
Q 001248 362 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV-AYS 440 (1114)
Q Consensus 362 ~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las-~~~ 440 (1114)
+.++++++++ ++++++.+++|.+||+.+++.+.... .+....+..++|+|||+++++ +..
T Consensus 3 ~g~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~~~------------------~~~~~~~~~~~~s~dg~~~~v~~~~ 63 (349)
T 1jmx_B 3 TGPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKSCV------------------MPDKFGPGTAMMAPDNRTAYVLNNH 63 (349)
T ss_dssp -CCCCCTTCE-EEEEEETTTEEEEEETTTTEEEEEEE------------------CSSCCSSCEEEECTTSSEEEEEETT
T ss_pred ccccccCCCE-EEEEeCCCCeEEEEECCCCcEEEEEe------------------cCCCCCCceeEECCCCCEEEEEeCC
Confidence 3567888877 58999999999999999987765311 111225788999999997654 456
Q ss_pred CCeEEEEEccCCceeeeeEeeccc-----cCCeeEEEecCCCCeeEEEEecCC------------CCEEEEeCCCCcce-
Q 001248 441 RHIVQIYSYHGGDEVRQHLEIDAH-----VGGVNDIAFSHPNKQLCVITCGDD------------KTIKVWDATNGAKQ- 502 (1114)
Q Consensus 441 dg~i~iwd~~~~~~~~~~~~l~~h-----~~~V~~v~~s~d~~~~~l~s~~~d------------~~i~iwd~~~~~~~- 502 (1114)
++.|.+||+.+++..... .+ ++ ...+.+++|+|||+ ++++++.+ +.|.+||+.+++..
T Consensus 64 ~~~i~~~d~~t~~~~~~~-~~-~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 139 (349)
T 1jmx_B 64 YGDIYGIDLDTCKNTFHA-NL-SSVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK 139 (349)
T ss_dssp TTEEEEEETTTTEEEEEE-ES-CCSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC
T ss_pred CCcEEEEeCCCCcEEEEE-Ec-ccccccccccccceEECCCCC--EEEEEcccccccccccccCCCeEEEEECCCccccc
Confidence 899999999998765422 11 22 23478999999999 56666644 89999999985543
Q ss_pred --eEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCC---------------------C---ee
Q 001248 503 --YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG---------------------R---WC 556 (1114)
Q Consensus 503 --~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~---------------------~---~v 556 (1114)
..+. +...+.+++|++ +|+ +++++ +.|.+||..+.+....+.... . ..
T Consensus 140 ~~~~~~-~~~~~~~~~~s~--dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (349)
T 1jmx_B 140 PVRTFP-MPRQVYLMRAAD--DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML 213 (349)
T ss_dssp CSEEEE-CCSSCCCEEECT--TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEE
T ss_pred eeeecc-CCCcccceeECC--CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEee
Confidence 3444 334577777754 556 55544 349999998877665554332 0 23
Q ss_pred EEEEEecCCCeE---------Ee--------------eecccceeEEEecC-CCCEEEEEeCCCeEEEEECCCcceEEEe
Q 001248 557 TTMAYSADGTRT---------YQ--------------GFRKRSLGVVQFDT-TKNRFLAAGDDFSIKFWDMDSVQLLTSI 612 (1114)
Q Consensus 557 ~~~~~s~~g~~~---------~~--------------~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 612 (1114)
..+++++++... +. .........++++| ++++++++ ++.|++||+.+++.+..+
T Consensus 214 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~ 291 (349)
T 1jmx_B 214 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAA 291 (349)
T ss_dssp EEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEE
T ss_pred eeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEE
Confidence 345555443110 00 00122456678899 99998888 899999999999988887
Q ss_pred ccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeec
Q 001248 613 DADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657 (1114)
Q Consensus 613 ~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 657 (1114)
.... .+.+++|+|+|++|++++.++.|.+||..++ +.+..+
T Consensus 292 ~~~~---~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~-~~~~~~ 332 (349)
T 1jmx_B 292 NLDH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL-EKVKNI 332 (349)
T ss_dssp ECSS---CCCEEEECSSSSCEEEESBSSEEEEEETTTT-EEEEEE
T ss_pred cCCC---CccceEECCCCCEEEEecCCCeEEEEecccc-ceeeee
Confidence 6432 3679999999999888888999999999887 444444
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.75 E-value=4.9e-16 Score=173.43 Aligned_cols=222 Identities=13% Similarity=0.086 Sum_probs=156.0
Q ss_pred CCccEEEEeeCCCEEEEEe---CCeEEEEEcCCCccccc-cCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc-ce
Q 001248 819 EAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DE 893 (1114)
Q Consensus 819 ~~v~~v~~s~d~~~l~~~~---dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~-~~ 893 (1114)
.....++++|||++|+++. +++|.+||+.+++.+.+ +... ....+.+.|.+...+++.+.||.+.+|++.. ++
T Consensus 108 ~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~ 185 (361)
T 2oiz_A 108 NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGK 185 (361)
T ss_dssp CCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSS
T ss_pred CCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCc
Confidence 3456789999999998875 47899999999888776 5532 2233567784557788889999999999865 55
Q ss_pred EEE------eecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccC------CCCCCCCCCceEEEEc
Q 001248 894 VKS------KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP------TGRTPTAQSDTRVQFH 961 (1114)
Q Consensus 894 ~~~------~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~------~~~~~~~~~i~~v~fs 961 (1114)
... .+..+..++ .+.+++++..++..+.++.|.++|+.............. .+..+ .....++|+
T Consensus 186 ~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p--~g~~~~a~~ 262 (361)
T 2oiz_A 186 VASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVP--GGYNLVGLH 262 (361)
T ss_dssp EEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEE--CCSSCEEEE
T ss_pred EeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccccccccc--CCeeEEEEe
Confidence 441 222223332 345578888888888999999999976432211111000 00000 122347999
Q ss_pred cCCcEEEEE-e-----------CCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCC--
Q 001248 962 QDQIHFLVV-H-----------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL-- 1027 (1114)
Q Consensus 962 pdg~~l~~~-~-----------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~-- 1027 (1114)
||++.++++ . ...|.+||+.+++.+..+.. +. +.+++|+|||++|++++. +.|.|||..++
T Consensus 263 ~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~--~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l 337 (361)
T 2oiz_A 263 RASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPG--RD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEP 337 (361)
T ss_dssp TTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEEC--TT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSC
T ss_pred cCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEec--CC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcc
Confidence 998888774 3 24799999999999998874 23 999999999999998886 99999999999
Q ss_pred eeeEEeCCCcccCCCCCCCCccceEEEecCCCCC
Q 001248 1028 KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN 1061 (1114)
Q Consensus 1028 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~ 1061 (1114)
+.+.++. ..| -.|..++++| ||.
T Consensus 338 ~~~~~i~-----~~G-----~~P~~~~~~p-~G~ 360 (361)
T 2oiz_A 338 KLLRTIE-----GAA-----EASLQVQFHP-VGG 360 (361)
T ss_dssp EEEEEET-----TSC-----SSEEEEEECC-CSC
T ss_pred eeeEEec-----cCC-----CCcEEEEecC-CCC
Confidence 9888863 112 3355788998 454
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-16 Score=180.13 Aligned_cols=252 Identities=13% Similarity=0.002 Sum_probs=161.5
Q ss_pred eEeccCCCCceE-----EEEcCCCCeEEEEEecCC--cEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCee
Q 001248 352 TRTLNQGSSPMS-----MDFHPVQQTLLLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN 424 (1114)
Q Consensus 352 ~~~~~h~~~v~~-----v~~spdg~~ll~tg~~dg--~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~ 424 (1114)
.+...|...+.. ++|||||++|++++..+| .|.+||+.+++... +..+|...+.
T Consensus 24 ~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~-------------------lt~~~~~~~~ 84 (388)
T 3pe7_A 24 TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ-------------------LTEGRGDNTF 84 (388)
T ss_dssp EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE-------------------CCCSSCBCSS
T ss_pred EEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE-------------------eeeCCCCCcc
Confidence 333336555555 899999998555544467 48889999887654 3455666666
Q ss_pred EEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEE--ecCCCCeeEEEE------------------
Q 001248 425 RVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIA--FSHPNKQLCVIT------------------ 484 (1114)
Q Consensus 425 ~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~--~s~d~~~~~l~s------------------ 484 (1114)
.++|||||++|+.++.++.|++||+.+++... .+..+...+.... ++++++ +++.
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~~~~~~~~~~~ 159 (388)
T 3pe7_A 85 GGFLSPDDDALFYVKDGRNLMRVDLATLEENV---VYQVPAEWVGYGTWVANSDCT--KLVGIEIRREDWVPLTDWKKFH 159 (388)
T ss_dssp SCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSS--EEEEEEEEGGGCCCCCSHHHHH
T ss_pred ceEEcCCCCEEEEEeCCCeEEEEECCCCccee---eeechhhcccccceeECCCCC--eeccccccCcccccccccchhh
Confidence 78899999999999999999999999987553 2334444454443 489998 4442
Q ss_pred ----ecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecC------CeEEEEEcCCCCCeeeecCCC-
Q 001248 485 ----CGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD------GKIKAWLYDNLGSRVDYEAPG- 553 (1114)
Q Consensus 485 ----~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~~~- 553 (1114)
.+.+..|.+||+.+++. ..+..+...+..++|++. +|..|+....+ ..|.++|..............
T Consensus 160 ~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~ 237 (388)
T 3pe7_A 160 EFYFTKPCCRLMRVDLKTGES-TVILQENQWLGHPIYRPY-DDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEG 237 (388)
T ss_dssp HHGGGCCCEEEEEEETTTCCE-EEEEEESSCEEEEEEETT-EEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTT
T ss_pred hhhccCCcceEEEEECCCCce-EEeecCCccccccEECCC-CCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCC
Confidence 23457899999998864 455556777888887651 55777776653 367777776543332222221
Q ss_pred CeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEe-C-C---CeEEEEECCCcceEEEeccCC--CC-CCcCeEE
Q 001248 554 RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-D-D---FSIKFWDMDSVQLLTSIDADG--GL-PASPRIR 625 (1114)
Q Consensus 554 ~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~-d---g~i~iwd~~~~~~~~~~~~~~--~~-~~v~~~~ 625 (1114)
..+....|+|||+ .|+..+ . + ..|++||+.+++......... +. .....+.
T Consensus 238 ~~~~~~~~spdg~---------------------~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~ 296 (388)
T 3pe7_A 238 ESCTHEFWVPDGS---------------------ALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSL 296 (388)
T ss_dssp EEEEEEEECTTSS---------------------CEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSE
T ss_pred cccccceECCCCC---------------------EEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCe
Confidence 2355556666665 443332 2 2 249999999887543322221 00 0123458
Q ss_pred EcCCCCEEEEE---------eCCCcEEEEEccCC
Q 001248 626 FNKDGCLLAVS---------TNDNGIKILATSDG 650 (1114)
Q Consensus 626 ~s~d~~~l~~~---------~~dg~i~iwd~~~~ 650 (1114)
|+|||+.|+.. ..+..|.+||+.++
T Consensus 297 ~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 297 MVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp EEEEECCC------------CCCCEEEEEETTTT
T ss_pred EccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 99999988754 44568999998776
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.6e-16 Score=176.28 Aligned_cols=207 Identities=10% Similarity=0.034 Sum_probs=139.1
Q ss_pred ccCCCCCeeE-----EEEcCCCCeEEEEeC-CC--eEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecC
Q 001248 416 VKDPGVSVNR-----VIWSPDGSLFGVAYS-RH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 487 (1114)
Q Consensus 416 ~~~h~~~V~~-----l~~spdg~~las~~~-dg--~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~ 487 (1114)
+..|...+.. .+|||||++|+.++. ++ .|.+||+.+++... ...+|...+..++|+|||+ .|+.++.
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~ 100 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD 100 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence 5566655555 899999999999987 66 48888998887554 3445665666789999999 6788888
Q ss_pred CCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEe----------------------cCCeEEEEEcCCCCC
Q 001248 488 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA----------------------LDGKIKAWLYDNLGS 545 (1114)
Q Consensus 488 d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~----------------------~d~~i~~wd~~~~~~ 545 (1114)
++.|++||+.+++....+..+...+....|..++++.+++... .+..|.+||+.+++.
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 8899999999998877777666666555554567777776432 346788899887543
Q ss_pred eeeecCCCCeeEEEEEec-CCCeEEeeecccceeEEEecCCCCEEEEEeC------CCeEEEEECCCcceEEEeccCCCC
Q 001248 546 RVDYEAPGRWCTTMAYSA-DGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD------DFSIKFWDMDSVQLLTSIDADGGL 618 (1114)
Q Consensus 546 ~~~~~~~~~~v~~~~~s~-~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~ 618 (1114)
. .+..+...+..+.|+| ||+ .++.... ...|.++|...+.. ..+..+...
T Consensus 181 ~-~l~~~~~~~~~~~~sp~dg~---------------------~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~ 237 (388)
T 3pe7_A 181 T-VILQENQWLGHPIYRPYDDS---------------------TVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEG 237 (388)
T ss_dssp E-EEEEESSCEEEEEEETTEEE---------------------EEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTT
T ss_pred E-EeecCCccccccEECCCCCC---------------------EEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCC
Confidence 3 2222333445555555 554 5555554 34788888766544 333322211
Q ss_pred CCcCeEEEcCCCCEEEEEeC-CC----cEEEEEccCC
Q 001248 619 PASPRIRFNKDGCLLAVSTN-DN----GIKILATSDG 650 (1114)
Q Consensus 619 ~~v~~~~~s~d~~~l~~~~~-dg----~i~iwd~~~~ 650 (1114)
..+..++|+|||+.|+..+. ++ .|.+||+.++
T Consensus 238 ~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (388)
T 3pe7_A 238 ESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETL 274 (388)
T ss_dssp EEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTC
T ss_pred cccccceECCCCCEEEEEecCCCCCcceEEEEecCCC
Confidence 23667899999997765443 22 2888887766
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.73 E-value=2.7e-15 Score=167.37 Aligned_cols=228 Identities=9% Similarity=0.008 Sum_probs=138.9
Q ss_pred CCCeEEEEE-----ecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEe----
Q 001248 369 VQQTLLLVG-----TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY---- 439 (1114)
Q Consensus 369 dg~~ll~tg-----~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~---- 439 (1114)
++++++++. ..|+.|.+||..+++.+.. +..+..+ .++|||||++|++++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spdg~~lyv~~~~~~ 72 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGM-------------------VPTAFNG--HVQVSNDGKKIYTMTTYHE 72 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEE-------------------EECCEEE--EEEECTTSSEEEEEEEEET
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEE-------------------ecCCCCC--ceEECCCCCEEEEEEeccc
Confidence 566544443 2378999999999887652 2333334 899999999999986
Q ss_pred ------CCCeEEEEEccCCceeeeeEeecc---ccCCeeEEEecCCCCeeEEEEec--CCCCEEEEeCCCCcceeE-eec
Q 001248 440 ------SRHIVQIYSYHGGDEVRQHLEIDA---HVGGVNDIAFSHPNKQLCVITCG--DDKTIKVWDATNGAKQYI-FEG 507 (1114)
Q Consensus 440 ------~dg~i~iwd~~~~~~~~~~~~l~~---h~~~V~~v~~s~d~~~~~l~s~~--~d~~i~iwd~~~~~~~~~-~~~ 507 (1114)
.++.|.+||..+++.+..+..... +......++|+|||++ |+++. .+++|.+||+.+++.+.+ +..
T Consensus 73 ~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~--l~v~n~~~~~~v~v~d~~~~~~~~~~i~~ 150 (361)
T 2oiz_A 73 RITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKF--IVLQNASPATSIGIVDVAKGDYVEDVTAA 150 (361)
T ss_dssp TSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSE--EEEEEESSSEEEEEEETTTTEEEEEEGGG
T ss_pred ccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCE--EEEECCCCCCeEEEEECCCCcEEEEEecC
Confidence 267799999998887664322211 2345778999999995 44443 468999999999988877 553
Q ss_pred cccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCC
Q 001248 508 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 587 (1114)
Q Consensus 508 h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~ 587 (1114)
. + ...+.+.+... ..+++.+.||.+.+|++.......... +. ...+.+... ...+.+++++.
T Consensus 151 ~-~-~~~v~~~p~~~-~~~~~~~~dg~~~~v~~~~~g~~~~~~-~~----~~~~~~~~~----------~~~~~~~~~g~ 212 (361)
T 2oiz_A 151 A-G-CWSVIPQPNRP-RSFMTICGDGGLLTINLGEDGKVASQS-RS----KQMFSVKDD----------PIFIAPALDKD 212 (361)
T ss_dssp T-T-EEEEEECTTSS-SEEEEEETTSSEEEEEECTTSSEEEEE-EC----CCCSCTTTS----------CBCSCCEECSS
T ss_pred C-C-cceeEEcCCCC-eeEEEECCCCcEEEEEECCCCcEeeec-cc----cceEcCCCC----------ceEEEecccCC
Confidence 2 1 22233444432 578888999999999986533322100 00 001111111 01112234455
Q ss_pred EEEEEeCCCeEEEEECCCcce--EEEeccCC--------CCCCcCeEEEcCCCCEEEEEe
Q 001248 588 RFLAAGDDFSIKFWDMDSVQL--LTSIDADG--------GLPASPRIRFNKDGCLLAVST 637 (1114)
Q Consensus 588 ~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~--------~~~~v~~~~~s~d~~~l~~~~ 637 (1114)
.++..+.++.|.++|+..+.. ...+.... .......++|+|+++.++++.
T Consensus 213 ~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~ 272 (361)
T 2oiz_A 213 KAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFM 272 (361)
T ss_dssp EEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEE
T ss_pred EEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEE
Confidence 667777889999999875532 22221110 001122378888877776654
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.5e-15 Score=168.85 Aligned_cols=258 Identities=9% Similarity=0.021 Sum_probs=163.7
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcC-CcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCe-
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVG-SRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL- 434 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~- 434 (1114)
+...+..++|+|||++ |++++.+ .|.+|++. +++...... ...+ +.+.+++|+|||++
T Consensus 38 ~~~~~~~~a~spdg~~-l~~~~~~-~v~~~~~~~~g~~~~~~~-----------------~~~~-g~~~~~~~spdg~~l 97 (365)
T 1jof_A 38 QDEPISWMTFDHERKN-IYGAAMK-KWSSFAVKSPTEIVHEAS-----------------HPIG-GHPRANDADTNTRAI 97 (365)
T ss_dssp TTCCCSEEEECTTSSE-EEEEEBT-EEEEEEEEETTEEEEEEE-----------------EECC-SSGGGGCTTSCCEEE
T ss_pred CCCCCcEEEECCCCCE-EEEEccc-eEEEEEECCCCCEEEeeE-----------------eecC-CCCccEEECCCCCEE
Confidence 4457899999999996 6677766 99999997 775533110 1111 13566899999995
Q ss_pred -EEEEe-------------CCCeEEEEEcc-CCceeeeeEeec-cccCCeeEEEecCCCCeeEEEEe-cCCCCEEEEeCC
Q 001248 435 -FGVAY-------------SRHIVQIYSYH-GGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITC-GDDKTIKVWDAT 497 (1114)
Q Consensus 435 -las~~-------------~dg~i~iwd~~-~~~~~~~~~~l~-~h~~~V~~v~~s~d~~~~~l~s~-~~d~~i~iwd~~ 497 (1114)
+++++ .++.+.+|++. .++.......+. .+...+.+++|+|||+. ++++ ..++.|++||+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~--l~~~~~~~~~v~~~~~~ 175 (365)
T 1jof_A 98 FLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETY--LYSADLTANKLWTHRKL 175 (365)
T ss_dssp EEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSE--EEEEETTTTEEEEEEEC
T ss_pred EEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCE--EEEEcCCCCEEEEEEEC
Confidence 45553 68999999997 455433222221 24567999999999994 4444 446799999998
Q ss_pred -CCcce--eEee--ccccCEEEEeeccCCCceEEEEEec-CCeEEEEEcCC--CCCeeeecCCCCeeEEEEEecCCCeEE
Q 001248 498 -NGAKQ--YIFE--GHEAPVYSVCPHHKENIQFIFSTAL-DGKIKAWLYDN--LGSRVDYEAPGRWCTTMAYSADGTRTY 569 (1114)
Q Consensus 498 -~~~~~--~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~-d~~i~~wd~~~--~~~~~~~~~~~~~v~~~~~s~~g~~~~ 569 (1114)
+++.. ..+. .|...+..++|+ ++|+++++++. ++.|.+|+++. +...... ..+...+.+.
T Consensus 176 ~~g~~~~~~~~~~~~~g~~p~~~~~s--pdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~-------~~~~~~~~~~--- 243 (365)
T 1jof_A 176 ASGEVELVGSVDAPDPGDHPRWVAMH--PTGNYLYALMEAGNRICEYVIDPATHMPVYTH-------HSFPLIPPGI--- 243 (365)
T ss_dssp TTSCEEEEEEEECSSTTCCEEEEEEC--TTSSEEEEEETTTTEEEEEEECTTTCCEEEEE-------EEEESSCTTC---
T ss_pred CCCCEEEeeeEecCCCCCCCCEeEEC--CCCCEEEEEECCCCeEEEEEEeCCCCcEEEcc-------ceEEcCCCCc---
Confidence 77653 2333 245678888875 45677777664 78999998764 2211100 0011111100
Q ss_pred eeecc-----cceeEEE-ecCCCCEEEEEeCC-C-----eEEEEECC-CcceEEE---eccCCCCCCcCeEEEcC---CC
Q 001248 570 QGFRK-----RSLGVVQ-FDTTKNRFLAAGDD-F-----SIKFWDMD-SVQLLTS---IDADGGLPASPRIRFNK---DG 630 (1114)
Q Consensus 570 ~~~~~-----~~v~~~~-~~~~~~~l~~~~~d-g-----~i~iwd~~-~~~~~~~---~~~~~~~~~v~~~~~s~---d~ 630 (1114)
.++.. .....++ |+|+|++|+++..+ + .|.+|++. +++.... ...+ ......++|+| ||
T Consensus 244 ~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~--~~~~~~~a~sp~~~dg 321 (365)
T 1jof_A 244 PDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP--TSGGHSNAVSPCPWSD 321 (365)
T ss_dssp CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS--SCCTTCCCEEECTTCT
T ss_pred CCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecC--CCCcccceecCCCcCC
Confidence 00000 0234455 66666677665532 2 89999986 5665432 2222 22467899999 89
Q ss_pred CEEEEEeCC-CcEEEEEccCC
Q 001248 631 CLLAVSTND-NGIKILATSDG 650 (1114)
Q Consensus 631 ~~l~~~~~d-g~i~iwd~~~~ 650 (1114)
++|++++.+ +.|.+|++...
T Consensus 322 ~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 322 EWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TEEEEECSSSCEEEEEEEETT
T ss_pred CEEEEEEcCCCeEEEEEEchh
Confidence 999998764 89999998765
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.8e-15 Score=164.41 Aligned_cols=252 Identities=13% Similarity=0.083 Sum_probs=184.7
Q ss_pred CCCccEEEEeeCCCEEEEEe-C------------------------CeEEEEEcCCCccccccC-CCCCCeEEEEEecCC
Q 001248 818 EEAVPCFALSKNDSYVMSAS-G------------------------GKISLFNMMTFKTMATFM-PPPPAATFLAFHPQD 871 (1114)
Q Consensus 818 ~~~v~~v~~s~d~~~l~~~~-d------------------------g~i~iwd~~~~~~~~~~~-~~~~~i~~l~~sp~d 871 (1114)
-..+.+++++++|+++++.. + ++|.+||..+++.+..+. .+-.....++++| +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence 45689999999999998887 4 379999998888776554 3445789999999 8
Q ss_pred CcEEEEEeCCCcEEEEEcccce-EEEee---------cccccCeeEEEEcC-CCCEEEEEe-CCCcEEEEeCCCCccccc
Q 001248 872 NNIIAIGMDDSSIQIYNVRVDE-VKSKL---------KGHSKRITGLAFSH-ALNVLVSSG-ADSQLCVWSSDGWEKQKN 939 (1114)
Q Consensus 872 ~~~la~g~~dg~v~iwd~~~~~-~~~~l---------~~h~~~V~~l~~s~-d~~~l~s~s-~D~~v~iwd~~~~~~~~~ 939 (1114)
++++++...++.|++||..... .+..+ .++.....+|+|+| ++.++++.+ .++.|++|+.+. +....
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g-~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG-KFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS-CEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC-CEEEE
Confidence 8899988889999999986542 44544 34556789999999 788888886 699999999554 22111
Q ss_pred cccccCCCC---CCCCCCceEEEEccC-CcEEEE-EeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECC------CCC
Q 001248 940 RFLQIPTGR---TPTAQSDTRVQFHQD-QIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSC------DSQ 1008 (1114)
Q Consensus 940 ~~~~~~~~~---~~~~~~i~~v~fspd-g~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~------dg~ 1008 (1114)
......+. .........++++|+ |.++++ ..++.|++|+..+++.+..+....+...+.+++|+| +|+
T Consensus 181 -~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~ 259 (329)
T 3fvz_A 181 -WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGK 259 (329)
T ss_dssp -ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECC
T ss_pred -eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCC
Confidence 00000000 001124689999999 666566 367899999999999998887667778899999999 333
Q ss_pred EEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCC
Q 001248 1009 LVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1080 (1114)
Q Consensus 1009 ~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~ 1080 (1114)
..++...+..|++|+..+++.+..+... .+ ..-.|..++++| |++++++...++.|++|++...
T Consensus 260 ~~v~~~~~~~v~~~~~~~g~~~~~~~~~----~~---~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 260 PYFGDQEPVQGFVMNFSSGEIIDVFKPV----RK---HFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp CCTTCSCCCCEEEEETTTCCEEEEECCS----SS---CCSSEEEEEECT-TSEEEEEESSSCCEEEEEEEEC
T ss_pred EEeccCCCcEEEEEEcCCCeEEEEEcCC----CC---ccCCeeEEEECC-CCCEEEEECCCCEEEEEeCCcc
Confidence 2222334458999999999999887521 11 113356899999 6788888899999999998754
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.7e-15 Score=171.05 Aligned_cols=189 Identities=11% Similarity=0.072 Sum_probs=124.8
Q ss_pred EeeCCCEEEEE------eCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCC------CcEEEEEcccce
Q 001248 826 LSKNDSYVMSA------SGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD------SSIQIYNVRVDE 893 (1114)
Q Consensus 826 ~s~d~~~l~~~------~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~d------g~v~iwd~~~~~ 893 (1114)
++|+++.++.. .+..|.+||+.+++..... .+...+..++|+|+++..|+..+.+ ..|++||+.+++
T Consensus 149 ~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~ 227 (396)
T 3c5m_A 149 WQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN 227 (396)
T ss_dssp CCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC
T ss_pred cCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc
Confidence 45667666543 2467999999887654433 3566789999999556666665543 368889987665
Q ss_pred EEEeeccc--ccCeeEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEcc-CCc
Q 001248 894 VKSKLKGH--SKRITGLAFSHALNVLVSSGAD-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ-DQI 965 (1114)
Q Consensus 894 ~~~~l~~h--~~~V~~l~~s~d~~~l~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fsp-dg~ 965 (1114)
.. .+..+ ...+..++|+|||++|+.++.+ +.|.+||+.+++... +.... ... +.|+| ||+
T Consensus 228 ~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~---l~~~~-------~~~-~~~s~~dg~ 295 (396)
T 3c5m_A 228 VR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEE---VMVMP-------PCS-HLMSNFDGS 295 (396)
T ss_dssp CE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEE---EEECC-------SEE-EEEECSSSS
T ss_pred ee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEE---eeeCC-------CCC-CCccCCCCc
Confidence 33 33333 2357889999999988877654 449999998765322 11111 122 89999 999
Q ss_pred EEEEE-----------------eCCeEEEEEcCCCceeeeeecCCCCc-----------CeeEEEECCCCCEEEEEEc-C
Q 001248 966 HFLVV-----------------HETQLAIFETTKLECVKQWVPRESSA-----------PITHATFSCDSQLVYACFL-D 1016 (1114)
Q Consensus 966 ~l~~~-----------------~d~~i~iwd~~~~~~~~~~~~~~h~~-----------~v~~l~~s~dg~~l~s~s~-D 1016 (1114)
+++++ .+..|.+||+.+++... +. .|.. .+..++|+|||++|+.++. +
T Consensus 296 ~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-l~--~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~ 372 (396)
T 3c5m_A 296 LMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQK-LC--KHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFE 372 (396)
T ss_dssp EEEEEECCC----------CCCCCCEEEEEETTTTBCCE-EE--ECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT
T ss_pred eEEEecCCcceeeccccccccCCCCcEEEEecccCceEE-cc--CCCCccccccccccCCCCCceEccCCCeEEEEecCC
Confidence 88873 23689999998887543 22 2222 2567899999999887765 4
Q ss_pred Ce--EEEEEcCCCeee
Q 001248 1017 AT--VCVFSAANLKLR 1030 (1114)
Q Consensus 1017 g~--I~vwd~~~~~~~ 1030 (1114)
+. |+++++.+++..
T Consensus 373 ~~~~l~~~~~~~~~~~ 388 (396)
T 3c5m_A 373 GVPAIYIADVPESYKH 388 (396)
T ss_dssp SSCEEEEEECCTTCC-
T ss_pred CCceEEEEEEcccccc
Confidence 54 555555555443
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-14 Score=155.88 Aligned_cols=243 Identities=11% Similarity=0.119 Sum_probs=176.8
Q ss_pred CCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccC------CCCCCeEEEEEecCCCcEEEEEeC-CCcEEEEE
Q 001248 817 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM------PPPPAATFLAFHPQDNNIIAIGMD-DSSIQIYN 888 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~------~~~~~i~~l~~sp~d~~~la~g~~-dg~v~iwd 888 (1114)
+-..+.+++++++++++++.. ++.|.+||.. ++.+..+. ++...+..+++++.+++++++... ++.|++||
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence 456688999999999888776 8999999987 55555443 233568999995327777776643 88999999
Q ss_pred cccceEEEeec-ccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEE
Q 001248 889 VRVDEVKSKLK-GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 967 (1114)
Q Consensus 889 ~~~~~~~~~l~-~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l 967 (1114)
.+++.+..+. .+...+.+++++++|+++++...++.|.+|+....... .... .++ ...+..++++++|+++
T Consensus 107 -~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~---~~~~-~~~---~~~p~~i~~~~~g~l~ 178 (286)
T 1q7f_A 107 -QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLH---KFGC-SKH---LEFPNGVVVNDKQEIF 178 (286)
T ss_dssp -TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEE---EEEC-TTT---CSSEEEEEECSSSEEE
T ss_pred -CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEE---EeCC-CCc---cCCcEEEEECCCCCEE
Confidence 5677666664 34567899999999998888888899999997642211 1111 111 1357899999999977
Q ss_pred EEE-eCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCC-eEEEEEcCCCeeeEEeCCCcccCCCCCC
Q 001248 968 LVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-TVCVFSAANLKLRCRINPSAYLPAGVSS 1045 (1114)
Q Consensus 968 ~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg-~I~vwd~~~~~~~~~~~~~~~~~~~~~~ 1045 (1114)
++. .++.|.+||. +++.+..+...++...+..++++++|+++++...++ .|.+||. +++.+..+.. ..
T Consensus 179 v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~----~~---- 248 (286)
T 1q7f_A 179 ISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALES----KV---- 248 (286)
T ss_dssp EEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEE----SS----
T ss_pred EEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcc----cC----
Confidence 774 6889999997 456666665444456889999999999888887776 9999995 5666666541 11
Q ss_pred CCccceEEEecCCCCCeEEEEeCCCcEEEEeccCC
Q 001248 1046 SNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1080 (1114)
Q Consensus 1046 ~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~ 1080 (1114)
....+..++++| +++++++ +.|++|++|++...
T Consensus 249 ~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 249 KHAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp CCSCEEEEEEET-TTEEEEE-ETTTEEEEEECSCC
T ss_pred CCCcceeEEECC-CCcEEEE-CCCCeEEEEEcccc
Confidence 112355899999 6776666 67999999998653
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3.2e-14 Score=157.04 Aligned_cols=251 Identities=12% Similarity=0.118 Sum_probs=184.2
Q ss_pred CCCceEEEEcCCCCeEEEEEecC------------------------CcEEEEEcCCcceeEEeeeeeeccCCCCccccc
Q 001248 358 GSSPMSMDFHPVQQTLLLVGTNV------------------------GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQA 413 (1114)
Q Consensus 358 ~~~v~~v~~spdg~~ll~tg~~d------------------------g~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~ 413 (1114)
-+.|.+++++|+|+ ++++.+.+ ++|.+||..+++.+..
T Consensus 23 l~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~----------------- 84 (329)
T 3fvz_A 23 PGQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS----------------- 84 (329)
T ss_dssp CSCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE-----------------
T ss_pred cCCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec-----------------
Confidence 36689999999998 57777766 4799999988876542
Q ss_pred ccccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCc-eeeeeEee---------ccccCCeeEEEecC-CCCeeEE
Q 001248 414 ALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD-EVRQHLEI---------DAHVGGVNDIAFSH-PNKQLCV 482 (1114)
Q Consensus 414 ~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~-~~~~~~~l---------~~h~~~V~~v~~s~-d~~~~~l 482 (1114)
.-.++-.....++++|+|+++++...++.|++||..... .+. .+ .++-.....++|+| ++. ++
T Consensus 85 -~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~---~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--ly 158 (329)
T 3fvz_A 85 -SGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLL---ILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VF 158 (329)
T ss_dssp -ECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSE---EESBTTBCCCSTTCCSSEEEEEECTTTCC--EE
T ss_pred -cCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEE---EecccCCCCCCccccCCCcEEEEeCCCCe--EE
Confidence 122444578999999999988888889999999986542 232 23 24455789999999 666 67
Q ss_pred EEec-CCCCEEEEeCCCCcceeEeec----------cccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeec-
Q 001248 483 ITCG-DDKTIKVWDATNGAKQYIFEG----------HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE- 550 (1114)
Q Consensus 483 ~s~~-~d~~i~iwd~~~~~~~~~~~~----------h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~- 550 (1114)
++.+ .++.|++|| .+|+.+..+.. +-.....+++.++ .+.++++...++.|++||..+++....+.
T Consensus 159 v~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~-~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~ 236 (329)
T 3fvz_A 159 VSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH-LDQLCVADRENGRIQCFKTDTKEFVREIKH 236 (329)
T ss_dssp EEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETT-TTEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred EEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECC-CCEEEEEECCCCEEEEEECCCCcEEEEEec
Confidence 7775 689999999 67887777643 2234788887643 15788888889999999998766665553
Q ss_pred -CCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEecc-CCCCCCcCeEEEcC
Q 001248 551 -APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA-DGGLPASPRIRFNK 628 (1114)
Q Consensus 551 -~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~ 628 (1114)
.....+..++++| +. .+..+++.+++...+..|++|+..+++.+..+.. ..+......++++|
T Consensus 237 ~~~~~~~~~~~~~p-g~--------------~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~ 301 (329)
T 3fvz_A 237 ASFGRNVFAISYIP-GF--------------LFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASE 301 (329)
T ss_dssp TTTTTCEEEEEEET-TE--------------EEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECT
T ss_pred cccCCCcceeeecC-CE--------------EEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECC
Confidence 3345666777777 32 1122333344455677999999999999888742 22344578999999
Q ss_pred CCCEEEEEeCCCcEEEEEccC
Q 001248 629 DGCLLAVSTNDNGIKILATSD 649 (1114)
Q Consensus 629 d~~~l~~~~~dg~i~iwd~~~ 649 (1114)
+|.++++...++.|++|++..
T Consensus 302 dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 302 DGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp TSEEEEEESSSCCEEEEEEEE
T ss_pred CCCEEEEECCCCEEEEEeCCc
Confidence 998888888899999999764
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=4e-13 Score=157.21 Aligned_cols=234 Identities=16% Similarity=0.121 Sum_probs=158.7
Q ss_pred CeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEcc
Q 001248 371 QTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYH 450 (1114)
Q Consensus 371 ~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~ 450 (1114)
.+++++...+++|.++|..+++.+... . ....+..++|||||+++.+++.|+.|.+||+.
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~v~~~i-------------------~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~ 226 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYEIKTVL-------------------D-TGYAVHISRLSASGRYLFVIGRDGKVNMIDLW 226 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEE-------------------E-CSSCEEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred ceEEEEeCCCCeEEEEECCCCeEEEEE-------------------e-CCCCccceEECCCCCEEEEEcCCCeEEEEECC
Confidence 346788888999999999999887631 1 12357799999999999999999999999996
Q ss_pred --CCceeeeeEeeccccCCeeEEEec----CCCCeeEEEEecCCCCEEEEeCCCCcceeEeecc----------cc-CEE
Q 001248 451 --GGDEVRQHLEIDAHVGGVNDIAFS----HPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH----------EA-PVY 513 (1114)
Q Consensus 451 --~~~~~~~~~~l~~h~~~V~~v~~s----~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h----------~~-~v~ 513 (1114)
+++.+. ++... .....++|+ |||++ ++++...+++|.++|..+.+.+.++... .. .+.
T Consensus 227 ~~t~~~v~---~i~~G-~~P~~ia~s~~~~pDGk~-l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva 301 (567)
T 1qks_A 227 MKEPTTVA---EIKIG-SEARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVA 301 (567)
T ss_dssp SSSCCEEE---EEECC-SEEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEE
T ss_pred CCCCcEeE---EEecC-CCCceeEEccccCCCCCE-EEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceE
Confidence 666554 33322 235799999 69996 4555566799999999999988876522 12 566
Q ss_pred EEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEe
Q 001248 514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 593 (1114)
Q Consensus 514 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 593 (1114)
.+..++.. ..++++...+|.|.++|......... ..+ +.+. ....+.|+|++++++++.
T Consensus 302 ~i~~s~~~-~~~vv~~~~~g~v~~vd~~~~~~~~v--------~~i---~~~~---------~~~d~~~~pdgr~~~va~ 360 (567)
T 1qks_A 302 AILASHYR-PEFIVNVKETGKILLVDYTDLNNLKT--------TEI---SAER---------FLHDGGLDGSHRYFITAA 360 (567)
T ss_dssp EEEECSSS-SEEEEEETTTTEEEEEETTCSSEEEE--------EEE---ECCS---------SEEEEEECTTSCEEEEEE
T ss_pred EEEEcCCC-CEEEEEecCCCeEEEEecCCCcccee--------eee---eccc---------cccCceECCCCCEEEEEe
Confidence 66655432 35677777789999999876432211 110 1111 223345666666776655
Q ss_pred -CCCeEEEEECCCcceEEEecc-CCCCCCcCeEE-EcCCCCEEE-EEe-CCCcEEEEEccCC
Q 001248 594 -DDFSIKFWDMDSVQLLTSIDA-DGGLPASPRIR-FNKDGCLLA-VST-NDNGIKILATSDG 650 (1114)
Q Consensus 594 -~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~-~s~d~~~l~-~~~-~dg~i~iwd~~~~ 650 (1114)
.++.|.++|..+++.+..+.. .....+-.... ++|++..+. ++. .++.|.++|..++
T Consensus 361 ~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~ 422 (567)
T 1qks_A 361 NARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPE 422 (567)
T ss_dssp GGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred CCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCC
Confidence 689999999999998887765 22111223344 478754444 443 4578999987653
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.6e-15 Score=170.07 Aligned_cols=238 Identities=13% Similarity=-0.006 Sum_probs=153.1
Q ss_pred ceEEEEcCCCCeEEEEEecCC--cEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEE
Q 001248 361 PMSMDFHPVQQTLLLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 438 (1114)
Q Consensus 361 v~~v~~spdg~~ll~tg~~dg--~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 438 (1114)
+.+++|||||++|+++...++ .|.+||+.+++... +..++......+.|||||++|+.+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-------------------l~~~~~~~~~~~~~spdg~~l~~~ 98 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-------------------LTEGKGDNTFGGFISTDERAFFYV 98 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-------------------CCCSSCBCTTTCEECTTSSEEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-------------------eecCCCCccccceECCCCCEEEEE
Confidence 788999999998555554433 68888998876543 122222233448899999999999
Q ss_pred eCCCeEEEEEccCCceeeeeEeeccccCCeeE-------------------EEecCCCCeeEEEEe-----cCCCCEEEE
Q 001248 439 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVND-------------------IAFSHPNKQLCVITC-----GDDKTIKVW 494 (1114)
Q Consensus 439 ~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~-------------------v~~s~d~~~~~l~s~-----~~d~~i~iw 494 (1114)
+.++.|.+||+.+++... ....+...... ++|+|+++. ++.+ ..+..|++|
T Consensus 99 ~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~--~~~~~~~~~~~~~~l~~~ 173 (396)
T 3c5m_A 99 KNELNLMKVDLETLEEQV---IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSW--EKFAEFYHTNPTCRLIKV 173 (396)
T ss_dssp ETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH--HHHHHHHHTCCCEEEEEE
T ss_pred EcCCcEEEEECCCCCcEE---EEecccccCCCCCEEEeccCCccccccccccccCCCCcc--eeeeeeccCCCcceEEEE
Confidence 999999999999886443 22223332222 357888874 3332 456789999
Q ss_pred eCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecC------CeEEEEEcCCCCCeeeecCC-CCeeEEEEEecCCCe
Q 001248 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD------GKIKAWLYDNLGSRVDYEAP-GRWCTTMAYSADGTR 567 (1114)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~g~~ 567 (1114)
|+.+++..... .+...+..+.|++. ++..|+..+.+ ..|.+||+............ ...+..+.|+|+|+
T Consensus 174 d~~~g~~~~~~-~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~- 250 (396)
T 3c5m_A 174 DIETGELEVIH-QDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGS- 250 (396)
T ss_dssp ETTTCCEEEEE-EESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSS-
T ss_pred ECCCCcEEeec-cCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCC-
Confidence 99988765444 46677888888652 34556655543 35788887654332222211 12344555555554
Q ss_pred EEeeecccceeEEEecCCCCEEEEEeCC-----CeEEEEECCCcceEEEeccCCCCCCcCeEEEcC-CCCEEEEEeC---
Q 001248 568 TYQGFRKRSLGVVQFDTTKNRFLAAGDD-----FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTN--- 638 (1114)
Q Consensus 568 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~--- 638 (1114)
+|+.++.+ +.|++||+.+++......... .. +.|+| ||+++++++.
T Consensus 251 --------------------~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~----~~-~~~s~~dg~~l~~~~~~~p 305 (396)
T 3c5m_A 251 --------------------AMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP----CS-HLMSNFDGSLMVGDGCDAP 305 (396)
T ss_dssp --------------------CEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS----EE-EEEECSSSSEEEEEECCC-
T ss_pred --------------------EEEEEecCCCCccceEEEEECCCCCeEEeeeCCC----CC-CCccCCCCceEEEecCCcc
Confidence 55555432 459999998887654433221 22 89999 9998887652
Q ss_pred -------------CCcEEEEEccCC
Q 001248 639 -------------DNGIKILATSDG 650 (1114)
Q Consensus 639 -------------dg~i~iwd~~~~ 650 (1114)
++.|.+||..++
T Consensus 306 ~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (396)
T 3c5m_A 306 VDVADADSYNIENDPFLYVLNTKAK 330 (396)
T ss_dssp ---------CCCCCCEEEEEETTTT
T ss_pred eeeccccccccCCCCcEEEEecccC
Confidence 367888887665
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.65 E-value=9.6e-15 Score=178.95 Aligned_cols=334 Identities=9% Similarity=0.002 Sum_probs=199.2
Q ss_pred eeccccCCeeEEEecCCCCeeEEEEe--cCCCCEEEEeCCCCcceeEeeccccCEE---------EEeeccCCCceE-EE
Q 001248 460 EIDAHVGGVNDIAFSHPNKQLCVITC--GDDKTIKVWDATNGAKQYIFEGHEAPVY---------SVCPHHKENIQF-IF 527 (1114)
Q Consensus 460 ~l~~h~~~V~~v~~s~d~~~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~h~~~v~---------~~~~~~~~~~~~-l~ 527 (1114)
.+.+|...|..++|+++.- ++++. +.++...||....+.....+..|...+. ...|+.++||+. |+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la 95 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEV--WWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV 95 (662)
T ss_dssp HHHHTCSCCEEEEEETTEE--EEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred HHhhcCCccceeEEcCCeE--EEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence 3567899999999997644 67777 6688899999765666677777766655 555554577777 66
Q ss_pred EEec-CCeEEEEEcC--CCCCeeeecC-----CCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCC----
Q 001248 528 STAL-DGKIKAWLYD--NLGSRVDYEA-----PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---- 595 (1114)
Q Consensus 528 s~~~-d~~i~~wd~~--~~~~~~~~~~-----~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---- 595 (1114)
..+. +..|.+|++. .......+.. +...+..++|+|||+ .|++++.+
T Consensus 96 ~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~---------------------~l~~~~~~~~~~ 154 (662)
T 3azo_A 96 FTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERG---------------------EVWCMAEEFTGE 154 (662)
T ss_dssp EEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTT---------------------EEEEEEEEECSS
T ss_pred EEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCC---------------------EEEEEEecccCC
Confidence 5544 4556666654 1023333333 233455555555554 67776655
Q ss_pred ------CeEEEEECCC------cceEEEec-cCCCCCCcCeEEEcCCCCEEEEEeCCC--------cEEEEEcc-CCcc-
Q 001248 596 ------FSIKFWDMDS------VQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDN--------GIKILATS-DGIR- 652 (1114)
Q Consensus 596 ------g~i~iwd~~~------~~~~~~~~-~~~~~~~v~~~~~s~d~~~l~~~~~dg--------~i~iwd~~-~~~~- 652 (1114)
..|++||+.+ ++.. .+. .+ ...+..++|||||++|+.++.++ .|++||+. ++..
T Consensus 155 ~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~--~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~ 231 (662)
T 3azo_A 155 GPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDA--HRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFA 231 (662)
T ss_dssp STTCEEEEEEEEETTSTTTTCGGGSE-ESSCSC--SSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEE
T ss_pred CCCCceeEEEEEECCCCccccCCcee-EEEecC--CCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCccc
Confidence 5899999988 5543 333 22 23578899999999999877553 57777776 3310
Q ss_pred ceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEec
Q 001248 653 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT 732 (1114)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~ 732 (1114)
....+.
T Consensus 232 ~~~~l~-------------------------------------------------------------------------- 237 (662)
T 3azo_A 232 DTRTLL-------------------------------------------------------------------------- 237 (662)
T ss_dssp EEEEEE--------------------------------------------------------------------------
T ss_pred ccEEeC--------------------------------------------------------------------------
Confidence 000000
Q ss_pred cCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccC
Q 001248 733 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 812 (1114)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~ 812 (1114)
..+...+..+.|+|||+.++++..++...||.+. ..++..... .
T Consensus 238 ---------------~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~--------------------~~~~~~~~l-~ 281 (662)
T 3azo_A 238 ---------------GGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVD--------------------PATGAATQL-C 281 (662)
T ss_dssp ---------------EETTBCEEEEEECTTSCEEEEECTTSSCEEEEEC--------------------TTTCCEEES-S
T ss_pred ---------------CCCCceEcceEECCCCeEEEEECCCCCeEEEEEE--------------------CCCCceeec-c
Confidence 0134567889999999977777777744444332 111211110 0
Q ss_pred CCC------CCCCCccEEEEeeCCCEEEEEeCCeEEEE--EcCCCccccccCCCCCCeEEE-EEecCCCcEEEEEeCCC-
Q 001248 813 TDS------NPEEAVPCFALSKNDSYVMSASGGKISLF--NMMTFKTMATFMPPPPAATFL-AFHPQDNNIIAIGMDDS- 882 (1114)
Q Consensus 813 ~~~------~~~~~v~~v~~s~d~~~l~~~~dg~i~iw--d~~~~~~~~~~~~~~~~i~~l-~~sp~d~~~la~g~~dg- 882 (1114)
... .-.-.+..+++++++++++++..+.++|| |+.+++ +..+..+...+..+ +++. +.-++++++.+.
T Consensus 282 ~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~-~~~~~~~~~~~~~ 359 (662)
T 3azo_A 282 RREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGE-LVDAAGPWTEWAATLTVSG-TRAVGVAASPRTA 359 (662)
T ss_dssp CCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTTE-EEECCSSCCEEEEEEEEET-TEEEEEEEETTEE
T ss_pred cccccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCCc-EEEecCCCCeEEEEEecCC-CEEEEEEcCCCCC
Confidence 000 00111467899999999888866777777 555554 56777777777777 5544 333444445554
Q ss_pred -cEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001248 883 -SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 931 (1114)
Q Consensus 883 -~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~ 931 (1114)
.|++||+.+++.......|...+....+++.....+.+..+..|..|-+
T Consensus 360 ~~i~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~~~ 409 (662)
T 3azo_A 360 YEVVELDTVTGRARTIGARHTDPVDPAYYPEPQIRTFTAPDGREIHAHIY 409 (662)
T ss_dssp EEEEEEETTTCCEEEEESCCCCSSCGGGSCCCEEEEEECTTSCEEEEEEE
T ss_pred CEEEEEECCCCceEEeecCCcccCCccccCcceEEEEEcCCCCEEEEEEE
Confidence 5666677677755444555444444444444333443333345655543
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=6.5e-13 Score=155.43 Aligned_cols=333 Identities=14% Similarity=0.093 Sum_probs=212.2
Q ss_pred CCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcC--CCCCeeeecCC
Q 001248 475 HPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD--NLGSRVDYEAP 552 (1114)
Q Consensus 475 ~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~--~~~~~~~~~~~ 552 (1114)
.|...+++++...+++|.++|..+++.+.++... ..+..+.+ ++||+++++++.|+.|.+||+. +.+....+..
T Consensus 163 ~d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~--SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~- 238 (567)
T 1qks_A 163 WDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRL--SASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI- 238 (567)
T ss_dssp CCGGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEE--CTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-
T ss_pred cCCCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEE--CCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-
Confidence 3433337888889999999999999999888743 35567776 4567899999999999999995 5444444332
Q ss_pred CCeeEEEEEe----cCCCeEEeeecccceeEEEecCCCCEEEEEe-CCCeEEEEECCCcceEEEeccCCC---------C
Q 001248 553 GRWCTTMAYS----ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGG---------L 618 (1114)
Q Consensus 553 ~~~v~~~~~s----~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~---------~ 618 (1114)
+.....++++ |||+ +++++. .+++|.++|..+.+.+..+...+. .
T Consensus 239 G~~P~~ia~s~~~~pDGk---------------------~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~ 297 (567)
T 1qks_A 239 GSEARSIETSKMEGWEDK---------------------YAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPE 297 (567)
T ss_dssp CSEEEEEEECCSTTCTTT---------------------EEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESC
T ss_pred CCCCceeEEccccCCCCC---------------------EEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCC
Confidence 2234455555 3554 565554 579999999999999888764321 1
Q ss_pred CCcCeEEEcCCCCEEEE-EeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhcccccccccccc
Q 001248 619 PASPRIRFNKDGCLLAV-STNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAAS 697 (1114)
Q Consensus 619 ~~v~~~~~s~d~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (1114)
..+..+..++++..++. ...+|.|.++|..+...
T Consensus 298 ~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~--------------------------------------------- 332 (567)
T 1qks_A 298 PRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN--------------------------------------------- 332 (567)
T ss_dssp CCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE---------------------------------------------
T ss_pred CceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc---------------------------------------------
Confidence 13344555555433332 22334555544332200
Q ss_pred ccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEE
Q 001248 698 MVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL 777 (1114)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~v 777 (1114)
+.+
T Consensus 333 -----------------------------------------------------------------------------~~v 335 (567)
T 1qks_A 333 -----------------------------------------------------------------------------LKT 335 (567)
T ss_dssp -----------------------------------------------------------------------------EEE
T ss_pred -----------------------------------------------------------------------------cee
Confidence 000
Q ss_pred EeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe--CCeEEEEEcCCCcccccc
Q 001248 778 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATF 855 (1114)
Q Consensus 778 w~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~ 855 (1114)
..+. .......+.|+|||++++++. +++|.++|+.+++.+..+
T Consensus 336 ~~i~-----------------------------------~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i 380 (567)
T 1qks_A 336 TEIS-----------------------------------AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIE 380 (567)
T ss_dssp EEEE-----------------------------------CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred eeee-----------------------------------ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEE
Confidence 0000 112234567888888887766 688999999988776555
Q ss_pred CC-----CCCCeEEEEEecCCCcEEEEEe-CCCcEEEEEccc-------ceEEEeecccccCeeEEEEcCCCCEEEEEeC
Q 001248 856 MP-----PPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRV-------DEVKSKLKGHSKRITGLAFSHALNVLVSSGA 922 (1114)
Q Consensus 856 ~~-----~~~~i~~l~~sp~d~~~la~g~-~dg~v~iwd~~~-------~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~ 922 (1114)
.. |.+.-..+ ++|+.+.+.+++. .++.|.++|..+ .+.+..+......-..|.++|++++|.+...
T Consensus 381 ~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~ 459 (567)
T 1qks_A 381 DTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDAT 459 (567)
T ss_dssp ECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECT
T ss_pred eccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecC
Confidence 43 33222222 5783355555553 468999999987 6778887765443345789999999988663
Q ss_pred -------CCcEEEEeCCCCcc---c-cccccccC--CCCCCCCCCceEEEEccCCcEEEEE------eCCeEEEEEcCCC
Q 001248 923 -------DSQLCVWSSDGWEK---Q-KNRFLQIP--TGRTPTAQSDTRVQFHQDQIHFLVV------HETQLAIFETTKL 983 (1114)
Q Consensus 923 -------D~~v~iwd~~~~~~---~-~~~~~~~~--~~~~~~~~~i~~v~fspdg~~l~~~------~d~~i~iwd~~~~ 983 (1114)
..+|.++|+.+.+. . ....+.+. .+.......+..+.|+|+|+++.++ .++.|.|+|.+++
T Consensus 460 ~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~ 539 (567)
T 1qks_A 460 LNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTL 539 (567)
T ss_dssp TCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred CCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCc
Confidence 35899999987511 1 11112110 0000011357899999999998875 2688999999999
Q ss_pred ceeeeee
Q 001248 984 ECVKQWV 990 (1114)
Q Consensus 984 ~~~~~~~ 990 (1114)
+.+..+.
T Consensus 540 ~~~~~i~ 546 (567)
T 1qks_A 540 ELKHVIK 546 (567)
T ss_dssp EEEEEEC
T ss_pred eEEEEeC
Confidence 9887765
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.64 E-value=2.7e-14 Score=174.89 Aligned_cols=243 Identities=9% Similarity=-0.027 Sum_probs=159.1
Q ss_pred eccCCCCceEEEEcCCCCeEEEEE--ecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCee-------
Q 001248 354 TLNQGSSPMSMDFHPVQQTLLLVG--TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN------- 424 (1114)
Q Consensus 354 ~~~h~~~v~~v~~spdg~~ll~tg--~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~------- 424 (1114)
...|...+..++|++++.+ ++++ +.++...||....+.... .+..|...|.
T Consensus 19 ~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~-------------------~l~~~~~~~~~~~~~~~ 78 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEVW-WVAPRPAEAGRATLVRRRADGAEE-------------------SALPAPWNVRNRVFEYS 78 (662)
T ss_dssp HHHTCSCCEEEEEETTEEE-EEEEETTTTTEEEEEEECTTSCEE-------------------ESSCTTCCBCCCGGGTC
T ss_pred HhhcCCccceeEEcCCeEE-EEecCcccCCcEEEEEECCCCCcc-------------------eeCCCCccccccccccC
Confidence 3458999999999988653 5555 457889999965443332 2444555555
Q ss_pred --EEEEc--CCCCe-EEEEeC-CCeEEEEEcc--C-CceeeeeEeecc-----ccCCeeEEEecCCCCeeEEEEecCC--
Q 001248 425 --RVIWS--PDGSL-FGVAYS-RHIVQIYSYH--G-GDEVRQHLEIDA-----HVGGVNDIAFSHPNKQLCVITCGDD-- 488 (1114)
Q Consensus 425 --~l~~s--pdg~~-las~~~-dg~i~iwd~~--~-~~~~~~~~~l~~-----h~~~V~~v~~s~d~~~~~l~s~~~d-- 488 (1114)
...|+ |||++ |+.++. +..|.+|++. + ++ .. .+.. |...+.+++|||||+ .|++++.+
T Consensus 79 ~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~~~ 152 (662)
T 3azo_A 79 GFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEEFT 152 (662)
T ss_dssp CCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEEEC
T ss_pred CccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE---eccCCccCCCCccccCcEECCCCC--EEEEEEeccc
Confidence 56565 99999 877654 4556666665 2 33 33 3444 667889999999999 56666655
Q ss_pred --------CCEEEEeCCC------CcceeEee-ccccCEEEEeeccCCCceEEEEEecCC--------eEEEEEcC-CCC
Q 001248 489 --------KTIKVWDATN------GAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDG--------KIKAWLYD-NLG 544 (1114)
Q Consensus 489 --------~~i~iwd~~~------~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d~--------~i~~wd~~-~~~ 544 (1114)
..|++||+.+ ++ ...+. .+...+..++|+ +||++|+.++.++ .|.+||+. ++.
T Consensus 153 ~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~S--pDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~ 229 (662)
T 3azo_A 153 GEGPSDVRRFLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRLS--PDGRQAVWLAWDHPRMPWEGTELKTARVTEDGR 229 (662)
T ss_dssp SSSTTCEEEEEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEEC--TTSSEEEEEEECTTCCTTTCEEEEEEEECTTSC
T ss_pred CCCCCCceeEEEEEECCCCccccCCc-eeEEEecCCCcccCceEC--CCCCEEEEEECCCCCCCCCCcEEEEEEECCCCc
Confidence 5799999987 44 45555 556667777764 5678888877553 79999987 331
Q ss_pred --Ceeee-cCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCC--eEEEEECCCcceEEEeccCCCC-
Q 001248 545 --SRVDY-EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF--SIKFWDMDSVQLLTSIDADGGL- 618 (1114)
Q Consensus 545 --~~~~~-~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~- 618 (1114)
....+ ..+... +..+.|+|+|++++++..++ .|++||..+++.......+...
T Consensus 230 ~~~~~~l~~~~~~~---------------------~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 288 (662)
T 3azo_A 230 FADTRTLLGGPEEA---------------------IAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFA 288 (662)
T ss_dssp EEEEEEEEEETTBC---------------------EEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSS
T ss_pred ccccEEeCCCCCce---------------------EcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccccccccc
Confidence 11111 112233 34455555555667777777 6777777677655443322211
Q ss_pred -----CCcCeEEEcCCCCEEEEEeCCCcEEEEEc
Q 001248 619 -----PASPRIRFNKDGCLLAVSTNDNGIKILAT 647 (1114)
Q Consensus 619 -----~~v~~~~~s~d~~~l~~~~~dg~i~iwd~ 647 (1114)
..+..++|+++++++++++. +.+++|.+
T Consensus 289 ~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 289 GPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL 321 (662)
T ss_dssp CCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred CccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence 01467899999999999888 98888854
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.9e-10 Score=141.67 Aligned_cols=552 Identities=9% Similarity=0.085 Sum_probs=310.4
Q ss_pred CCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEE
Q 001248 358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 437 (1114)
Q Consensus 358 ~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 437 (1114)
...|.++...++|. |-.|+. +.+..||..+++.... ... .......|.++...++|.+.+.
T Consensus 87 ~n~I~~i~~d~~g~--lWigT~-~Gl~~yd~~~~~f~~~-~~~---------------~~~~~~~i~~i~~d~~g~lwi~ 147 (795)
T 4a2l_A 87 NDISRIVKTDSQGR--VWIGTR-DGLSRYDEEKDIFQNF-FYE---------------KNGKHLQVNGIEEISPEQLLIS 147 (795)
T ss_dssp CSCEEEEEECTTSC--EEEEES-SCEEEEETTTTEEEEE-CCE---------------ETTEECCCCEEEEEETTEEEEE
T ss_pred ccceeEEEECCCCC--EEEEeC-CchheeCCCCCeEEec-ccc---------------ccCCCceEEEEEECCCCCEEEE
Confidence 45799999999998 334554 4589999877653221 000 0000011889998888876664
Q ss_pred EeCCCeEEEEEccCCceeeeeEeec-cc-cCC-eeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEe-eccccCEE
Q 001248 438 AYSRHIVQIYSYHGGDEVRQHLEID-AH-VGG-VNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVY 513 (1114)
Q Consensus 438 ~~~dg~i~iwd~~~~~~~~~~~~l~-~h-~~~-V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~ 513 (1114)
. . +.|..||..+++... +. ++ ... |.++...+++. +. .++.++.|..||..+++..... ..+...|.
T Consensus 148 t-~-~gl~~~~~~~~~~~~----~~~~~~~~~~i~~i~~d~~g~--lw-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~ 218 (795)
T 4a2l_A 148 T-P-EGLIMFDIKESKFID----DSFSTAMHKTIASTLYRQGDQ--IY-IGTSTDGLYTYSITQKTFEKVIPILGTKQIQ 218 (795)
T ss_dssp E-T-TEEEEEETTTTEEEC----SSSCHHHHTCCEEEEEEETTE--EE-EEESSSCEEEEETTTCCEEECC----CCCEE
T ss_pred E-C-CceEEEECCCCEEEe----ccCCCCCCcceEEEEECCCCC--EE-EEECCCCEEEEeCCCCeEEEecCCCCCCeeE
Confidence 4 4 448899987764322 11 11 123 88888888876 33 3555556899998776643321 12345677
Q ss_pred EEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEe
Q 001248 514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 593 (1114)
Q Consensus 514 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 593 (1114)
++.. +.++. +..++.++-+..||..+..... +.... ... .......+.++..+++|. +..|+
T Consensus 219 ~i~~--d~~g~-lwigt~~~Gl~~~~~~~~~~~~-~~~~~----------~~~---~~l~~~~i~~i~~d~~g~-lWigt 280 (795)
T 4a2l_A 219 AILQ--QSPTR-IWVATEGAGLFLINPKTKEIKN-YLHSP----------SNP---KSISSNYIRSLAMDSQNR-LWIGT 280 (795)
T ss_dssp EEEE--EETTE-EEEEEBSSCEEEEETTTTEEEE-ECCCT----------TCT---TSCSCSBEEEEEECTTSC-EEEEE
T ss_pred EEEE--cCCCC-EEEEECCCCeEEEeCCCCeEEE-eecCC----------CCc---cccCCCeEEEEEEcCCCC-EEEEe
Confidence 7764 34444 4555555458888876532221 11100 000 000112344444444444 55555
Q ss_pred CCCeEEEEECCCcceEEEeccC-----CCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCC
Q 001248 594 DDFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTS 668 (1114)
Q Consensus 594 ~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 668 (1114)
.+ -|.+||..+++........ -....|.++...++|.+. .|+.++.|..|+..++. +..+.....
T Consensus 281 ~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~--~~~~~~~~~------ 350 (795)
T 4a2l_A 281 FN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMW-LGTYFGGLNYYHPIRNR--FKNIRNIPY------ 350 (795)
T ss_dssp SS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEE-EEESSSCEEEECGGGGS--SEEECCCTT------
T ss_pred CC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEE-EEECCCCeEEeCCCccc--ceEEcCCCC------
Confidence 55 5889998777654332211 012457888888888755 56677778888765431 111100000
Q ss_pred CCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCcc
Q 001248 669 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN 748 (1114)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~ 748 (1114)
+..
T Consensus 351 -----------------------------------------------------------------------------~~~ 353 (795)
T 4a2l_A 351 -----------------------------------------------------------------------------KNS 353 (795)
T ss_dssp -----------------------------------------------------------------------------SSS
T ss_pred -----------------------------------------------------------------------------CCC
Confidence 000
Q ss_pred ccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEee
Q 001248 749 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 828 (1114)
Q Consensus 749 ~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~ 828 (1114)
.....|.++...++|. |..++.++-+..|+.....+. .+....+.. ...-....|.+++..+
T Consensus 354 l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~------------~~~~~~~~~-----~~~l~~~~v~~i~~d~ 415 (795)
T 4a2l_A 354 LSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFT------------SYTLQEDES-----ARGIGSNNIKAVYVDE 415 (795)
T ss_dssp CSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEE------------EECCC-----------CCSCSCEEEEEEET
T ss_pred CCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEE------------EEecCCCCc-----ccCCCCccEEEEEEcC
Confidence 0235688888888887 445666655666654322110 000000000 0000245688999999
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCccccccC----CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecc---
Q 001248 829 NDSYVMSAS-GGKISLFNMMTFKTMATFM----PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG--- 900 (1114)
Q Consensus 829 d~~~l~~~~-dg~i~iwd~~~~~~~~~~~----~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~--- 900 (1114)
+|+.|-+|. ++.|.+||..+++...... .....|.++...+ ++++.+ |+. +-+.+||..+++.......
T Consensus 416 ~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~ 492 (795)
T 4a2l_A 416 KKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWL-GTL-SALVRFNPEQRSFTTIEKEKDG 492 (795)
T ss_dssp TTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEE-EES-SCEEEEETTTTEEEECCBCTTC
T ss_pred CCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEE-Eec-CceeEEeCCCCeEEEccccccc
Confidence 998445555 6889999988765432211 2345789999887 676555 444 4588999887764432211
Q ss_pred ---cccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEE
Q 001248 901 ---HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAI 977 (1114)
Q Consensus 901 ---h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~i 977 (1114)
+...|.++...++|++.+... . -|..|+..+++. . ..............|.++...++|.+.+.+.. .+..
T Consensus 493 ~~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~~~~-~--~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~ 566 (795)
T 4a2l_A 493 TPVVSKQITTLFRDSHKRLWIGGE-E-GLSVFKQEGLDI-Q--KASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYC 566 (795)
T ss_dssp CBCCCCCEEEEEECTTCCEEEEES-S-CEEEEEEETTEE-E--ECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEE
T ss_pred cccCCceEEEEEECCCCCEEEEeC-C-ceEEEeCCCCeE-E--EecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-Ccee
Confidence 236789999999988777554 4 488898876432 1 10000000011236788999999997766554 7889
Q ss_pred EEcCCCceeeeeecCC-CCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEec
Q 001248 978 FETTKLECVKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAH 1056 (1114)
Q Consensus 978 wd~~~~~~~~~~~~~~-h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 1056 (1114)
||..+++....-...+ ....|.++...++|.+.+++ ++-|..|+..+++.. .+.....++. .....-++...
T Consensus 567 ~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t--~~Gl~~~~~~~~~~~-~~~~~dGl~~----~~f~~~~~~~~ 639 (795)
T 4a2l_A 567 FNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST--NRGISCFNPETEKFR-NFTESDGLQS----NQFNTASYCRT 639 (795)
T ss_dssp EETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE--TTEEEEEETTTTEEE-EECGGGTCSC----SCEEEEEEEEC
T ss_pred ECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc--CCceEEEcCCCCcEE-EcCCcCCCcc----ccCccCceeEC
Confidence 9987765433211111 14568999999999876655 455778998877654 3432222221 11222245555
Q ss_pred CCCCCeEEEEeCCCcEEEEeccC
Q 001248 1057 PQEPNEFALGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1057 ~~d~~~l~s~~~Dg~v~vW~i~~ 1079 (1114)
+ +|. |..|+.+| +..++...
T Consensus 640 ~-~G~-l~~g~~~G-l~~~~p~~ 659 (795)
T 4a2l_A 640 S-VGQ-MYFGGING-ITTFRPEL 659 (795)
T ss_dssp T-TSC-EEEEETTE-EEEECGGG
T ss_pred C-CCe-EEEecCCc-eEEEcHHH
Confidence 5 555 55566666 55666654
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=3e-13 Score=146.12 Aligned_cols=247 Identities=14% Similarity=0.172 Sum_probs=171.2
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEE-cCCCCeE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW-SPDGSLF 435 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~-spdg~~l 435 (1114)
+-..+.+++++++|+ ++++...++.|.+||.. ++.+..... .....+|...+.++++ .++|+++
T Consensus 28 ~~~~p~~v~~~~~g~-l~v~~~~~~~i~~~d~~-g~~~~~~~~-------------~~~~~~~~~~p~~i~~~~~~g~l~ 92 (286)
T 1q7f_A 28 QFTEPSGVAVNAQND-IIVADTNNHRIQIFDKE-GRFKFQFGE-------------CGKRDSQLLYPNRVAVVRNSGDII 92 (286)
T ss_dssp CBSCEEEEEECTTCC-EEEEEGGGTEEEEECTT-SCEEEEECC-------------BSSSTTCBSSEEEEEEETTTTEEE
T ss_pred ccCCCceEEECCCCC-EEEEECCCCEEEEECCC-CcEEEEecc-------------cCCCcccccCceEEEEEcCCCeEE
Confidence 446789999999998 68888889999999987 444332100 0001244567899999 5778777
Q ss_pred EEEeC-CCeEEEEEccCCceeeeeEeec-cccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEee--ccccC
Q 001248 436 GVAYS-RHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE--GHEAP 511 (1114)
Q Consensus 436 as~~~-dg~i~iwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~h~~~ 511 (1114)
++... ++.|.+|| .+++.+. .+. .+...+.+++++++|+ ++++...++.|.+||. +++.+..+. ++...
T Consensus 93 v~~~~~~~~i~~~d-~~g~~~~---~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~ 165 (286)
T 1q7f_A 93 VTERSPTHQIQIYN-QYGQFVR---KFGATILQHPRGVTVDNKGR--IIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEF 165 (286)
T ss_dssp EEECGGGCEEEEEC-TTSCEEE---EECTTTCSCEEEEEECTTSC--EEEEETTTTEEEEECT-TSCEEEEEECTTTCSS
T ss_pred EEcCCCCCEEEEEC-CCCcEEE---EecCccCCCceEEEEeCCCC--EEEEECCCCEEEEEcC-CCCEEEEeCCCCccCC
Confidence 76643 78999999 4555443 232 3445789999999998 6788778899999995 566666664 34566
Q ss_pred EEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEE
Q 001248 512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 591 (1114)
Q Consensus 512 v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~ 591 (1114)
+..+++++ +|.++++...++.|.+||... .....+..... ......++++++++.+++
T Consensus 166 p~~i~~~~--~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~g~-------------------~~~p~~i~~d~~G~l~v~ 223 (286)
T 1q7f_A 166 PNGVVVND--KQEIFISDNRAHCVKVFNYEG-QYLRQIGGEGI-------------------TNYPIGVGINSNGEILIA 223 (286)
T ss_dssp EEEEEECS--SSEEEEEEGGGTEEEEEETTC-CEEEEESCTTT-------------------SCSEEEEEECTTCCEEEE
T ss_pred cEEEEECC--CCCEEEEECCCCEEEEEcCCC-CEEEEEccCCc-------------------cCCCcEEEECCCCCEEEE
Confidence 88888754 567788878899999999743 22222222110 012344556666666777
Q ss_pred EeCCC-eEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccC
Q 001248 592 AGDDF-SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 649 (1114)
Q Consensus 592 ~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~ 649 (1114)
...++ .|.+||. +++.+..+..+.....+.+++++|+|+++++ +.++.|++|+...
T Consensus 224 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 224 DNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp ECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred eCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 77775 9999995 5677777765443334668999999987776 6789999998754
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=4.9e-10 Score=139.57 Aligned_cols=546 Identities=10% Similarity=0.073 Sum_probs=315.0
Q ss_pred CCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEE
Q 001248 358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 437 (1114)
Q Consensus 358 ~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 437 (1114)
...|+++.-.++|. |=.|+.+| +..||-. .. +.+..... .. ..-....|.+|...++|.+.+
T Consensus 42 ~n~v~~I~qD~~G~--lWigT~~G-L~ryDG~---~f-----~~~~~~~~----~~--~~l~~n~I~~i~~d~~g~lWi- 103 (795)
T 4a2l_A 42 QSTVFSIDQDKRGN--MWFATYDG-VNKYDGY---AF-----TVYQHNED----DP--NSIANDISRIVKTDSQGRVWI- 103 (795)
T ss_dssp SSCEEEEEECTTSC--EEEEETTE-EEEECSS---CE-----EEECCCTT----CT--TSCSCSCEEEEEECTTSCEEE-
T ss_pred cceeEEEEEcCCCC--EEEeecCc-CcccCCC---ce-----EEEeCCCC----CC--CcccccceeEEEECCCCCEEE-
Confidence 45799999999997 44566665 5666632 22 22211000 00 001235799999999887655
Q ss_pred EeCCCeEEEEEccCCceeeeeEeecccc----CCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeecc-ccC-
Q 001248 438 AYSRHIVQIYSYHGGDEVRQHLEIDAHV----GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH-EAP- 511 (1114)
Q Consensus 438 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~----~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h-~~~- 511 (1114)
|+.+| +..||..+++... +.... ..|.++...++|. +.+. +. +.|.+||..+++......++ ...
T Consensus 104 gT~~G-l~~yd~~~~~f~~----~~~~~~~~~~~i~~i~~d~~g~--lwi~-t~-~gl~~~~~~~~~~~~~~~~~~~~~~ 174 (795)
T 4a2l_A 104 GTRDG-LSRYDEEKDIFQN----FFYEKNGKHLQVNGIEEISPEQ--LLIS-TP-EGLIMFDIKESKFIDDSFSTAMHKT 174 (795)
T ss_dssp EESSC-EEEEETTTTEEEE----ECCEETTEECCCCEEEEEETTE--EEEE-ET-TEEEEEETTTTEEECSSSCHHHHTC
T ss_pred EeCCc-hheeCCCCCeEEe----ccccccCCCceEEEEEECCCCC--EEEE-EC-CceEEEECCCCEEEeccCCCCCCcc
Confidence 45555 8999988765322 21111 1288999888887 3443 33 45889997766533211111 123
Q ss_pred EEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeee-cCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEE
Q 001248 512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 590 (1114)
Q Consensus 512 v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~ 590 (1114)
|.++.. +.++. +..++.++.|..|+..+....... ......|.++. .++++. +.
T Consensus 175 i~~i~~--d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~---------------------~d~~g~-lw 229 (795)
T 4a2l_A 175 IASTLY--RQGDQ-IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAIL---------------------QQSPTR-IW 229 (795)
T ss_dssp CEEEEE--EETTE-EEEEESSSCEEEEETTTCCEEECC----CCCEEEEE---------------------EEETTE-EE
T ss_pred eEEEEE--CCCCC-EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEE---------------------EcCCCC-EE
Confidence 777664 33444 445666556888887654322110 01122333333 333333 55
Q ss_pred EEeCCCeEEEEECCCcceEEEeccC-----CCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccc
Q 001248 591 AAGDDFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS 665 (1114)
Q Consensus 591 ~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 665 (1114)
.++.++-|.+||..+++........ -....|.++...++|.+.+. +.+ .|.+|+..++ . +..+......
T Consensus 230 igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-t~~-Gl~~~~~~~~-~-~~~~~~~~~~-- 303 (795)
T 4a2l_A 230 VATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIG-TFN-DLNIYHEGTD-S-FASYSSNPVE-- 303 (795)
T ss_dssp EEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEE-ESS-CEEEEETTTT-E-EEEECCCTTS--
T ss_pred EEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEE-eCC-hhheEcCCCC-e-EEEEecCCCC--
Confidence 5665555899998776544332211 01235788888888886654 444 5888887654 1 1111100000
Q ss_pred cCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCcccccccc
Q 001248 666 RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL 745 (1114)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~ 745 (1114)
..
T Consensus 304 --------------------------------------------------------------------------~~---- 305 (795)
T 4a2l_A 304 --------------------------------------------------------------------------NG---- 305 (795)
T ss_dssp --------------------------------------------------------------------------TT----
T ss_pred --------------------------------------------------------------------------CC----
Confidence 00
Q ss_pred CccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEE
Q 001248 746 PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA 825 (1114)
Q Consensus 746 ~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~ 825 (1114)
......|.++...++|. +..++.++-|..|+.....+. .+..... . ..-....|.+++
T Consensus 306 --~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~------------~~~~~~~---~----~~l~~~~V~~i~ 363 (795)
T 4a2l_A 306 --SLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFK------------NIRNIPY---K----NSLSDNVVSCIV 363 (795)
T ss_dssp --SCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSE------------EECCCTT---S----SSCSCSSEEEEE
T ss_pred --CCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccce------------EEcCCCC---C----CCCCCCeeEEEE
Confidence 01345688899999888 445555555666664432211 0100000 0 001345688999
Q ss_pred EeeCCCEEEEEeCCeEEEEEcCCCccccccC--------CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEe
Q 001248 826 LSKNDSYVMSASGGKISLFNMMTFKTMATFM--------PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 897 (1114)
Q Consensus 826 ~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~--------~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~ 897 (1114)
..++|.+.+...++.|..|+..++....... .....|.+++..+ ++++|.+|+.++-|..||..+++....
T Consensus 364 ~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~~~~~~~~~ 442 (795)
T 4a2l_A 364 EDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHRNSGQVENF 442 (795)
T ss_dssp ECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEETTTCCEEEE
T ss_pred ECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeCCCCcEEEe
Confidence 9888886665557789999987765432211 1235689999988 777566688877899999988764332
Q ss_pred ec----ccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCC
Q 001248 898 LK----GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET 973 (1114)
Q Consensus 898 l~----~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~ 973 (1114)
.. .+...|.++...++|.+.+... +| |.+|+..+++....... ..........|.++...++|.+.+.+. +
T Consensus 443 ~~~~~~l~~~~v~~i~~d~~g~lwigt~-~G-l~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~i~~d~~g~lWigt~-~ 517 (795)
T 4a2l_A 443 NQRNSQLVNENVYAILPDGEGNLWLGTL-SA-LVRFNPEQRSFTTIEKE--KDGTPVVSKQITTLFRDSHKRLWIGGE-E 517 (795)
T ss_dssp CTTTSCCSCSCEEEEEECSSSCEEEEES-SC-EEEEETTTTEEEECCBC--TTCCBCCCCCEEEEEECTTCCEEEEES-S
T ss_pred ecCCCCcCCCeeEEEEECCCCCEEEEec-Cc-eeEEeCCCCeEEEcccc--ccccccCCceEEEEEECCCCCEEEEeC-C
Confidence 21 2346799999988888666544 44 88999877543211110 000011114678899999998877766 6
Q ss_pred eEEEEEcCCCceeeeeec-----CCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCc
Q 001248 974 QLAIFETTKLECVKQWVP-----RESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNV 1048 (1114)
Q Consensus 974 ~i~iwd~~~~~~~~~~~~-----~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v 1048 (1114)
.|..||..+++. .+.. ......|.++...++|.+.+++ .. -+..||..+++.. .+.....++. ..+
T Consensus 518 Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~-Gl~~~d~~~~~~~-~~~~~~gl~~----~~i 588 (795)
T 4a2l_A 518 GLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGT-RE-GFYCFNEKDKQIK-RYNTTNGLPN----NVV 588 (795)
T ss_dssp CEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SS-CEEEEETTTTEEE-EECGGGTCSC----SCE
T ss_pred ceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEe-CC-CceeECCCCCcEE-EeCCCCCCch----hhe
Confidence 799999887765 2221 1124579999999999866644 34 5888998877654 3332222222 224
Q ss_pred cceEEEecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1049 HPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1049 ~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
. ++..++ +|++.+++ ++.|..|+..+++
T Consensus 589 ~--~i~~d~-~g~lWi~t--~~Gl~~~~~~~~~ 616 (795)
T 4a2l_A 589 Y--GILEDS-FGRLWLST--NRGISCFNPETEK 616 (795)
T ss_dssp E--EEEECT-TSCEEEEE--TTEEEEEETTTTE
T ss_pred E--EEEECC-CCCEEEEc--CCceEEEcCCCCc
Confidence 3 676666 46665544 4567778876654
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.2e-13 Score=152.06 Aligned_cols=222 Identities=11% Similarity=0.096 Sum_probs=152.6
Q ss_pred CccEEEEeeCCCEEEEEe-C---Ce--EEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCC------------
Q 001248 820 AVPCFALSKNDSYVMSAS-G---GK--ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD------------ 881 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~~~~-d---g~--i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~d------------ 881 (1114)
.+..++|||||++|+..+ + +. |.+|++.+++.......+ . +..++|+| |++.|+.++.+
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECT-TSSEEEEEEECCCC---------
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECC-CCCEEEEEEccCCCcCCcEEEcc
Confidence 467899999999999876 3 33 888888877655444333 3 99999999 88888877632
Q ss_pred ---------------CcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCC-------cEEEEeCCCCccccc
Q 001248 882 ---------------SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS-------QLCVWSSDGWEKQKN 939 (1114)
Q Consensus 882 ---------------g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~-------~v~iwd~~~~~~~~~ 939 (1114)
..|++||+.+++.+..+.. . .+..++|+||| ++++++.+. ...||.+++++..
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-- 211 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEE-- 211 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEE--
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceE--
Confidence 5799999998887455554 4 78999999999 888776652 4455555433221
Q ss_pred cccccCCCCCCCCCCceEEEEccCCcEEEE-EeC--------CeEEEEEcCCCceeeeeecCCCCcCeeE-EEECCCCCE
Q 001248 940 RFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHE--------TQLAIFETTKLECVKQWVPRESSAPITH-ATFSCDSQL 1009 (1114)
Q Consensus 940 ~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d--------~~i~iwd~~~~~~~~~~~~~~h~~~v~~-l~~s~dg~~ 1009 (1114)
.+. .+ ..+.. ++|||++|+. +.+ ..|.+|| +++..... .+|...+.. +.|+ |+ +
T Consensus 212 -~l~--~~-----~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~--~~~~~~~~~~~~~s-dg-~ 275 (347)
T 2gop_A 212 -KMF--EK-----VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGIL--DEVDRGVGQAKIKD-GK-V 275 (347)
T ss_dssp -EEE--EE-----ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESS--TTCCSEEEEEEEET-TE-E
T ss_pred -Eec--cC-----cceee--ECCCCCEEEEEEccccCCccccceEEEEC--CCceEecc--ccCCcccCCccEEc-Cc-E
Confidence 111 11 12333 3999999887 433 3688888 55543322 355677886 9999 98 8
Q ss_pred EEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcE-EEEeccCCC
Q 001248 1010 VYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGV-HVFEPLESE 1081 (1114)
Q Consensus 1010 l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v-~vW~i~~~~ 1081 (1114)
+++++.++.++|| +.+++....+. + ...+. .++|+| .++++++.++.. .+|.+. ++
T Consensus 276 ~~~~~~~~~~~l~-~~~g~~~~~~~-------~--~~~v~--~~~~s~---~~~~~~~~~~~~~~l~~~~-g~ 332 (347)
T 2gop_A 276 YFTLFEEGSVNLY-IWDGEIKPIAK-------G--RHWIM--GFDVDE---IVVYLKETATRLRELFTWD-GE 332 (347)
T ss_dssp EEEEEETTEEEEE-EESSSEEEEEC-------S--SSEEE--EEEESS---SEEEEEECSSSCCEEEEES-SS
T ss_pred EEEEecCCcEEEE-EcCCceEEEec-------C--CCeEE--eeeeeC---cEEEEEcCCCChHHheEeC-Cc
Confidence 8999999999999 88766543332 1 11133 778887 577888878765 788776 44
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.3e-13 Score=144.88 Aligned_cols=253 Identities=11% Similarity=0.054 Sum_probs=185.2
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCccccccCCCC-CCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccc-cCe
Q 001248 829 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS-KRI 905 (1114)
Q Consensus 829 d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~-~~V 905 (1114)
.++.|++++ ++.|.+||.++++.+.++..+. ..+.+++++| +|++|+ +.++.|+.||. +|+.+..+..+. ..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 457788887 8999999999999999988765 4789999999 899888 34778999999 899998888653 578
Q ss_pred eEEEEcCCCCEEEEEeC-CCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCeEEEEEcCCC
Q 001248 906 TGLAFSHALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKL 983 (1114)
Q Consensus 906 ~~l~~s~d~~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~i~iwd~~~~ 983 (1114)
.++.+.+||+++++.+. ++.|..++.+. +......+. .+..........+++.++|+++++. .++.|..||.. |
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~~G-k~l~~~~~~--~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G 155 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNMKG-EVLSKTEFE--TGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G 155 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECTTS-CEEEEEEEC--CSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeCCC-CEEEEEecc--CCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C
Confidence 89999999999999887 77777777643 322111111 1100000134566889999999985 78999999998 9
Q ss_pred ceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeE
Q 001248 984 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEF 1063 (1114)
Q Consensus 984 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l 1063 (1114)
+.+..+... ..+.++.+.++|.++++++.+++|..+|..+|+.+.++.... .+ + .....+..+...+ +++++
T Consensus 156 ~~~w~~~~~---~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~-~~-~--~~l~~~~~~~~~~-~G~i~ 227 (276)
T 3no2_A 156 QLLNSVKLS---GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNAND-IE-G--VQLFFVAQLFPLQ-NGGLY 227 (276)
T ss_dssp CEEEEEECS---SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGG-SB-S--CCCSEEEEEEECT-TSCEE
T ss_pred CEEEEEECC---CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCC-CC-C--ccccccccceEcC-CCCEE
Confidence 988887642 456778889999999999888899999999999998876211 11 1 0113344677777 67777
Q ss_pred EEEeCC--------CcEEEEec-cCCCCcccCCCCCCCCCCCC
Q 001248 1064 ALGLSD--------GGVHVFEP-LESEGKWGVPPPVDNGSTSS 1097 (1114)
Q Consensus 1064 ~s~~~D--------g~v~vW~i-~~~~~~~~~~~~~~~~~~~~ 1097 (1114)
++.... +..+++++ .+|+-.|+.....+-|.+++
T Consensus 228 v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~ 270 (276)
T 3no2_A 228 ICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMIST 270 (276)
T ss_dssp EEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCE
T ss_pred EEeccCccccccccCCceEEEECCCCCEEEEecCcccccceee
Confidence 776311 24467777 67888888876666665554
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-12 Score=142.26 Aligned_cols=242 Identities=10% Similarity=0.081 Sum_probs=166.3
Q ss_pred EeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCC
Q 001248 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1114)
....+.....+++|+|+|+.+++++..++.|..||..++ .. .+..+...+.+++++|+|
T Consensus 22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~-------------------~~~~~~~~~~~l~~~~dg 80 (296)
T 3e5z_A 22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS-------------------PEMHPSHHQNGHCLNKQG 80 (296)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE-------------------EEESSCSSEEEEEECTTC
T ss_pred EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE-------------------EEECCCCCcceeeECCCC
Confidence 344466778999999999977899999999999999887 22 133456689999999999
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeeeEeecc-ccCCeeEEEecCCCCeeEEEE----ec-------------CCCCEEEE
Q 001248 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVIT----CG-------------DDKTIKVW 494 (1114)
Q Consensus 433 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~-h~~~V~~v~~s~d~~~~~l~s----~~-------------~d~~i~iw 494 (1114)
+++++...++.|.+||..+++.........+ ....+.+++++|+|+ ++++ |+ ..+.|..+
T Consensus 81 ~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~ 158 (296)
T 3e5z_A 81 HLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRWVFRL 158 (296)
T ss_dssp CEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCEEEEE
T ss_pred cEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcEEEEE
Confidence 9888877778999999988764332111111 123577899999998 6676 33 12456666
Q ss_pred eCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCe----eeecCCCCeeEEEEEecCCCeEEe
Q 001248 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR----VDYEAPGRWCTTMAYSADGTRTYQ 570 (1114)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~----~~~~~~~~~v~~~~~s~~g~~~~~ 570 (1114)
+.. ++ +..+..+......++|++ +++.+++.+.++.|.+|++...... ..+.....
T Consensus 159 ~~~-g~-~~~~~~~~~~~~gi~~s~--dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~---------------- 218 (296)
T 3e5z_A 159 APD-GT-LSAPIRDRVKPNGLAFLP--SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPG---------------- 218 (296)
T ss_dssp CTT-SC-EEEEECCCSSEEEEEECT--TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSS----------------
T ss_pred CCC-CC-EEEeecCCCCCccEEECC--CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCC----------------
Confidence 644 44 445555667788888754 5567777788899999998732222 11111111
Q ss_pred eecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEE-cCCCCEEEEEeCCCcEEEEEccC
Q 001248 571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRF-NKDGCLLAVSTNDNGIKILATSD 649 (1114)
Q Consensus 571 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-s~d~~~l~~~~~dg~i~iwd~~~ 649 (1114)
....++++++|+.+++. ++.|.+||.. ++.+..+..+.. +.+++| +++++.|++++.++ +.-++..+
T Consensus 219 -----~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~ 286 (296)
T 3e5z_A 219 -----KTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVSTE-FWSIETNV 286 (296)
T ss_dssp -----CCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC---CCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred -----CCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC---ceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence 22345666666655555 8899999986 777777765532 789999 58999999888763 43444443
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.57 E-value=5.3e-13 Score=147.87 Aligned_cols=282 Identities=12% Similarity=0.105 Sum_probs=186.0
Q ss_pred cceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCC
Q 001248 752 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 831 (1114)
Q Consensus 752 ~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~ 831 (1114)
..|.++.|++++..++..+.++.++.|.-. .... +. .+...+.+++|+++|+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~-~~--~~~~~~~~~~~~~~g~ 57 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITAE-------------------------PWLE-IS--KKGLQLEGLNFDRQGQ 57 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEECE-------------------------EEEE-EE--SSCCCEEEEEECTTSC
T ss_pred cccceeeecCCccceeEEeecccCcccccc-------------------------eeEE-Ee--ccCccccCcEECCCCC
Confidence 456677888888877777777777766211 0000 11 1345578999999999
Q ss_pred EEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCC----CcEEEEEcccceEEEeec--ccccC
Q 001248 832 YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD----SSIQIYNVRVDEVKSKLK--GHSKR 904 (1114)
Q Consensus 832 ~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~d----g~v~iwd~~~~~~~~~l~--~h~~~ 904 (1114)
+++++. ++.|.+||..+++.......+...+.+++++| +++++++...+ +.|++||..+++....+. .+...
T Consensus 58 l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 136 (333)
T 2dg1_A 58 LFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYC 136 (333)
T ss_dssp EEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCC
T ss_pred EEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCc
Confidence 877776 78999999988776554434567899999999 88888877666 689999998876543332 34567
Q ss_pred eeEEEEcCCCCEEEEEeC------CCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE--eCCeEE
Q 001248 905 ITGLAFSHALNVLVSSGA------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLA 976 (1114)
Q Consensus 905 V~~l~~s~d~~~l~s~s~------D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~--~d~~i~ 976 (1114)
+.+++++|+|+++++... .+.|..|+.++++... ... . ...+..++|+|||++|+++ .++.|.
T Consensus 137 ~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~---~----~~~~~~i~~~~dg~~l~v~~~~~~~i~ 207 (333)
T 2dg1_A 137 IDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP--IIQ---N----ISVANGIALSTDEKVLWVTETTANRLH 207 (333)
T ss_dssp EEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE--EEE---E----ESSEEEEEECTTSSEEEEEEGGGTEEE
T ss_pred ccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE--eec---C----CCcccceEECCCCCEEEEEeCCCCeEE
Confidence 899999999998887654 2456666655433211 111 1 0245789999999877653 468999
Q ss_pred EEEcCC-Cceeeee------ecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCcc
Q 001248 977 IFETTK-LECVKQW------VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVH 1049 (1114)
Q Consensus 977 iwd~~~-~~~~~~~------~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 1049 (1114)
+||..+ +.....+ ...++ ..+..++++++|+++++...++.|.+||. +++.+..+..... ..++ ...
T Consensus 208 ~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~-~~g~---~~~ 281 (333)
T 2dg1_A 208 RIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGR-DEGH---MLR 281 (333)
T ss_dssp EEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTG-GGTC---SCB
T ss_pred EEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCC-cccc---ccC
Confidence 999864 3332211 11122 46788999999998888878899999998 5666666541110 0011 012
Q ss_pred ceEEEecCCCCCeEEEEeCCC----cEEEEecc
Q 001248 1050 PLVIAAHPQEPNEFALGLSDG----GVHVFEPL 1078 (1114)
Q Consensus 1050 ~~~~~~~~~d~~~l~s~~~Dg----~v~vW~i~ 1078 (1114)
+..++|+| |++.|++++.++ .-.+|.+.
T Consensus 282 ~~~~~~~~-dg~~L~v~~~~g~~~~~~~l~~~~ 313 (333)
T 2dg1_A 282 STHPQFIP-GTNQLIICSNDIEMGGGSMLYTVN 313 (333)
T ss_dssp CCEEEECT-TSCEEEEEEECGGGTCCEEEEEEE
T ss_pred cceEEECC-CCCEEEEEeCccCCCCCceEEEEe
Confidence 44789987 566676655553 33445443
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.55 E-value=5.1e-13 Score=148.99 Aligned_cols=222 Identities=12% Similarity=0.112 Sum_probs=143.4
Q ss_pred CCceEEEEcCCCCeEEEEEe--------cCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC
Q 001248 359 SSPMSMDFHPVQQTLLLVGT--------NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1114)
Q Consensus 359 ~~v~~v~~spdg~~ll~tg~--------~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1114)
..+..+++ ||++++++.. .++.|++||+.+++... + ..+..++|||
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~Sp 68 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRISP 68 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEECT
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEECC
Confidence 44677788 9998555432 25679999998876432 2 3688999999
Q ss_pred CCCeEEEEeCC---C--eEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecC------------------
Q 001248 431 DGSLFGVAYSR---H--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD------------------ 487 (1114)
Q Consensus 431 dg~~las~~~d---g--~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~------------------ 487 (1114)
||++||.++.+ + .|.+||+.+++... +..+.. +..++|+|||+. |+.++.
T Consensus 69 Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~~--l~~~~~~~~~~~~~~~~~~~~~~~ 141 (347)
T 2gop_A 69 DGKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSRK--LLIVGFKRREDEDFIFEDDVPAWF 141 (347)
T ss_dssp TSSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSSE--EEEEEECCCC---------CCCC-
T ss_pred CCCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCCE--EEEEEccCCCcCCcEEEcccceee
Confidence 99999988754 3 37788888876443 223334 999999999995 444432
Q ss_pred ---------CCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCC-------eEEEEEcCCCCCeeeecC
Q 001248 488 ---------DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDG-------KIKAWLYDNLGSRVDYEA 551 (1114)
Q Consensus 488 ---------d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~-------~i~~wd~~~~~~~~~~~~ 551 (1114)
...|.+||+.+++.+..+.. . .+..++|+ ++| +++++..++ ...+|.++ ......+..
T Consensus 142 ~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~s--pdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~ 215 (347)
T 2gop_A 142 DDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWH--RDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKMFE 215 (347)
T ss_dssp --------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEE--TTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEEEE
T ss_pred cCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCC--CCe-EEEEEecccccccccccccEEEeC-CCceEEecc
Confidence 25699999998887555654 3 77777875 566 777775542 34555444 222221111
Q ss_pred CCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCC--------CeEEEEECCCcceEEEeccCCCCCCcCe
Q 001248 552 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD--------FSIKFWDMDSVQLLTSIDADGGLPASPR 623 (1114)
Q Consensus 552 ~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~ 623 (1114)
+ . .+. .++|+|++++.++.+ ..|++|| +++.......+ ...+..
T Consensus 216 ~-~---------------------~~~--~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~--~~~~~~ 267 (347)
T 2gop_A 216 K-V---------------------SFY--AVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEV--DRGVGQ 267 (347)
T ss_dssp E-E---------------------SEE--EEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTC--CSEEEE
T ss_pred C-c---------------------cee--eECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccC--CcccCC
Confidence 1 1 111 125666667666643 4788888 55543333322 234665
Q ss_pred -EEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 624 -IRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 624 -~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
+.|+ |+ ++++++.++.+++| +.++
T Consensus 268 ~~~~s-dg-~~~~~~~~~~~~l~-~~~g 292 (347)
T 2gop_A 268 AKIKD-GK-VYFTLFEEGSVNLY-IWDG 292 (347)
T ss_dssp EEEET-TE-EEEEEEETTEEEEE-EESS
T ss_pred ccEEc-Cc-EEEEEecCCcEEEE-EcCC
Confidence 8899 88 88899999999999 8643
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.55 E-value=3.9e-12 Score=138.75 Aligned_cols=205 Identities=11% Similarity=0.088 Sum_probs=142.1
Q ss_pred CccEEEEeeCCCEEEEEe---CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc-ceEE
Q 001248 820 AVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVK 895 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~-~~~~ 895 (1114)
....++++|||+++.++. ++.|.++|+.+++.+.++.... . ...+ |.+.+.+++.+.||++.+.++.+ ++..
T Consensus 138 ~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~-P~g~~~~~~~~~DG~~~~v~~~~~g~v~ 213 (386)
T 3sjl_D 138 YPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIF-PTAPDTFFMHCRDGSLAKVAFGTEGTPE 213 (386)
T ss_dssp CGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEE-EEETTEEEEEETTSCEEEEECCSSSCCE
T ss_pred CCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceee-cCCCceeEEECCCCCEEEEECCCCCeEE
Confidence 345688999999888775 4789999999999888875332 1 2233 42566777788899999998876 5543
Q ss_pred Eeecccc----cCee-EEEEc-CCCCEEEEEeCCCcEEEEeCCCCccccccccccC------CCCCCCCCCceEEEEccC
Q 001248 896 SKLKGHS----KRIT-GLAFS-HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP------TGRTPTAQSDTRVQFHQD 963 (1114)
Q Consensus 896 ~~l~~h~----~~V~-~l~~s-~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~------~~~~~~~~~i~~v~fspd 963 (1114)
.....+. ..+. ..+|. ++|++++ .+.+|+|.+.|+.+........+..+ .+.. ......++++++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~--p~g~q~~a~~~~ 290 (386)
T 3sjl_D 214 ITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWR--PGGWQQVAYHRA 290 (386)
T ss_dssp EEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEE--ECSSSCEEEETT
T ss_pred EeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceecccccccccccc--CCCcceeeECCC
Confidence 2221121 2222 24664 6775554 66689999999977543211111100 1111 124456888999
Q ss_pred CcEEEEEe-----------CCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCC-EEEEEEc-CCeEEEEEcCCCeee
Q 001248 964 QIHFLVVH-----------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACFL-DATVCVFSAANLKLR 1030 (1114)
Q Consensus 964 g~~l~~~~-----------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~s~-Dg~I~vwd~~~~~~~ 1030 (1114)
++.+.+.. ...|.++|+++++.++.+.. ...+.+|+|++|++ +|++++. ++.|.|+|..+++.+
T Consensus 291 ~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v---g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~ 367 (386)
T 3sjl_D 291 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM---GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL 367 (386)
T ss_dssp TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE---EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred CCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC---CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEE
Confidence 99998842 14799999999999999876 34788999999997 7777654 899999999999999
Q ss_pred EEeC
Q 001248 1031 CRIN 1034 (1114)
Q Consensus 1031 ~~~~ 1034 (1114)
.++.
T Consensus 368 ~~i~ 371 (386)
T 3sjl_D 368 RSVN 371 (386)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9987
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=6.9e-13 Score=163.19 Aligned_cols=249 Identities=9% Similarity=-0.019 Sum_probs=164.1
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCC----cEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCC
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg----~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1114)
|...+..++|||||++|+++.+.+| +|++||+.+++.... .+. ...+..++|||||
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~------------------~~~--~~~~~~~~wspDg 182 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD------------------VLE--RVKFSCMAWTHDG 182 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE------------------EEE--EECSCCEEECTTS
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc------------------ccc--CcccceEEEEeCC
Confidence 4446889999999997555544444 899999999987642 011 1136789999999
Q ss_pred CeEEEEeCCCe----------------EEEEEccCCcee-eeeEeeccccCCeeEEEecCCCCeeEEEEecC---CCCEE
Q 001248 433 SLFGVAYSRHI----------------VQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD---DKTIK 492 (1114)
Q Consensus 433 ~~las~~~dg~----------------i~iwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~---d~~i~ 492 (1114)
+.|+.++.++. |++|++.++... ........|...+..++|||||+.+++.+... +..|+
T Consensus 183 ~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~ 262 (710)
T 2xdw_A 183 KGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLW 262 (710)
T ss_dssp SEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEE
T ss_pred CEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEE
Confidence 99999988765 999999887632 11112233566688999999999633332211 56899
Q ss_pred EEeCCC------Cc-ceeEeeccccCEEEEeeccCCCceEEEEEecC----CeEEEEEcCCCCC--eeeecCCCC--eeE
Q 001248 493 VWDATN------GA-KQYIFEGHEAPVYSVCPHHKENIQFIFSTALD----GKIKAWLYDNLGS--RVDYEAPGR--WCT 557 (1114)
Q Consensus 493 iwd~~~------~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d----~~i~~wd~~~~~~--~~~~~~~~~--~v~ 557 (1114)
+||+.+ +. ....+..+...+... |++ +|..|+..+.+ +.|.+||+.+... ...+..+.. .+.
T Consensus 263 ~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~ 339 (710)
T 2xdw_A 263 YCDLQQESNGITGILKWVKLIDNFEGEYDY-VTN--EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLE 339 (710)
T ss_dssp EEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEE--ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEE
T ss_pred EEECcccccccCCccceEEeeCCCCcEEEE-Eec--cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEE
Confidence 999987 53 466677676666553 443 44555555442 3699999877542 122222222 344
Q ss_pred EEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCe--EEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEE
Q 001248 558 TMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS--IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV 635 (1114)
Q Consensus 558 ~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 635 (1114)
.+.++ +++.++++...++. |++|++.+++.+..+..+ ...+..++++|++..++.
T Consensus 340 ~~~~~---------------------~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~ 396 (710)
T 2xdw_A 340 WVACV---------------------RSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFY 396 (710)
T ss_dssp EEEEE---------------------TTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEE
T ss_pred EEEEE---------------------cCCEEEEEEEECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEE
Confidence 44444 33345777777774 666787778877777655 345778899999876664
Q ss_pred Ee----CCCcEEEEEccCCc
Q 001248 636 ST----NDNGIKILATSDGI 651 (1114)
Q Consensus 636 ~~----~dg~i~iwd~~~~~ 651 (1114)
.. ..+++..||+.++.
T Consensus 397 ~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 397 QFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEECSSCCCEEEEEETTSSS
T ss_pred EEeCCCCCCEEEEEECCCCc
Confidence 42 34789999998874
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.54 E-value=1e-12 Score=144.51 Aligned_cols=241 Identities=11% Similarity=0.104 Sum_probs=171.5
Q ss_pred CCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEe
Q 001248 819 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 897 (1114)
Q Consensus 819 ~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~ 897 (1114)
.....+++. +++..++.. ++.|.+||..+++.+.++. .......+++++ +++++++...++.|.+||..+++....
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~ 120 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGY 120 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEE
Confidence 345667774 344444444 7999999999999888875 346689999998 776555554789999999999988776
Q ss_pred ecccc-----cCeeEEEEcCCCCEEEEEe-CCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-
Q 001248 898 LKGHS-----KRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV- 970 (1114)
Q Consensus 898 l~~h~-----~~V~~l~~s~d~~~l~s~s-~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~- 970 (1114)
+.... .....+++ .+++.+++.. .+++|.+||..+++..... .. + .....++++|+|++++++
T Consensus 121 i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i--~~--g-----~~p~~i~~~~dG~l~v~~~ 190 (328)
T 3dsm_A 121 IECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDEL--TI--G-----IQPTSLVMDKYNKMWTITD 190 (328)
T ss_dssp EECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEE--EC--S-----SCBCCCEECTTSEEEEEBC
T ss_pred EEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEE--Ec--C-----CCccceEEcCCCCEEEEEC
Confidence 65433 14567888 3444444443 4889999999986543321 11 1 134678999999987774
Q ss_pred eC----------CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccC
Q 001248 971 HE----------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLP 1040 (1114)
Q Consensus 971 ~d----------~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~ 1040 (1114)
.+ +.|.++|..+++....+.... ...+..++|+||+++|+++.. .|.+||..+++.... .+.+
T Consensus 191 ~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~-g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~----~~~~ 263 (328)
T 3dsm_A 191 GGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL-GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVR----PFLE 263 (328)
T ss_dssp CBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT-TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSS----CSBC
T ss_pred CCccCCccccCCceEEEEECCCCeEEEEEecCC-CCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeee----eeec
Confidence 33 689999999998877765421 347899999999999988754 899999999886421 1111
Q ss_pred CCCCCCCccceEEEecCCCCCeEEEE----eCCCcEEEEeccCCCCcc
Q 001248 1041 AGVSSSNVHPLVIAAHPQEPNEFALG----LSDGGVHVFEPLESEGKW 1084 (1114)
Q Consensus 1041 ~~~~~~~v~~~~~~~~~~d~~~l~s~----~~Dg~v~vW~i~~~~~~~ 1084 (1114)
.+ .-.|..++++|+++++.++. ..++.|.+|+.. ++..+
T Consensus 264 ~~----~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~ 306 (328)
T 3dsm_A 264 FR----DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLID 306 (328)
T ss_dssp CC----SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEE
T ss_pred CC----CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEE
Confidence 11 13455899999767777777 678999999998 77333
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.4e-11 Score=132.01 Aligned_cols=281 Identities=11% Similarity=0.116 Sum_probs=190.9
Q ss_pred cccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeC
Q 001248 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d 829 (1114)
....+.+++++++|+.+++...++.|.+|+.. +........ .....+.+++++++
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-----------------------~~~~~~~~~--~~~~~~~~i~~~~~ 67 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-----------------------GKITEYPLP--TPDAKVMCLTISSD 67 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-----------------------CCEEEEECS--STTCCEEEEEECTT
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-----------------------CCeEEecCC--cccCceeeEEECCC
Confidence 45678999999999977776667888887643 111111111 13456889999999
Q ss_pred CCEEEEEe-CCeEEEEEcCCCcc-ccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEE-eecccccCee
Q 001248 830 DSYVMSAS-GGKISLFNMMTFKT-MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS-KLKGHSKRIT 906 (1114)
Q Consensus 830 ~~~l~~~~-dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~-~l~~h~~~V~ 906 (1114)
|.++++.. ++.|..||.. ++. ...+......+..+++++ +++++++...++.|.+||. +++... .+..+...+.
T Consensus 68 g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~ 144 (299)
T 2z2n_A 68 GEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPS 144 (299)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEE
T ss_pred CCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCc
Confidence 99888776 7899999986 332 122223455789999999 8888887777889999998 554432 2333456789
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCeEEEEEcCCCce
Q 001248 907 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC 985 (1114)
Q Consensus 907 ~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~i~iwd~~~~~~ 985 (1114)
++++.++|+++++...++.|..|+. +++... ..... . ...+..++++++|++.++. .++.|.+||. +++.
T Consensus 145 ~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~~-~---~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~ 215 (299)
T 2z2n_A 145 FITLGSDNALWFTENQNNAIGRITE-SGDITE---FKIPT-P---ASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI 215 (299)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECT-TCCEEE---EECSS-T---TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE
T ss_pred eEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE---eeCCC-C---CCcceeEEECCCCCEEEEccCCceEEEECC-CCcE
Confidence 9999999988888777889999998 543321 11111 1 1356899999999977765 4788999999 6664
Q ss_pred eeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEE
Q 001248 986 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1065 (1114)
Q Consensus 986 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s 1065 (1114)
. .+....+...+.+++++++|+++++...++.|.+||. +++.. .+. .+.+ . -.+..+++ + ++++.++
T Consensus 216 ~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~----~~~~--~--~~~~~i~~-~-~g~l~v~ 282 (299)
T 2z2n_A 216 T-EFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIE-EYP----IQIK--S--AEPHGICF-D-GETIWFA 282 (299)
T ss_dssp E-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEE-EEE----CSSS--S--CCEEEEEE-C-SSCEEEE
T ss_pred E-EEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceE-EEe----CCCC--C--CccceEEe-c-CCCEEEE
Confidence 3 3333345678999999999996666657889999998 45433 332 1111 1 22447777 5 5666665
Q ss_pred EeCCCcEEEEeccCCC
Q 001248 1066 GLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1066 ~~~Dg~v~vW~i~~~~ 1081 (1114)
.. .+.+..+++.+++
T Consensus 283 ~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 283 ME-CDKIGKLTLIKDN 297 (299)
T ss_dssp ET-TTEEEEEEEC---
T ss_pred ec-CCcEEEEEcCccc
Confidence 44 6788888887654
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.8e-12 Score=140.73 Aligned_cols=234 Identities=8% Similarity=-0.034 Sum_probs=162.4
Q ss_pred CCCCccEEEEeeCCC-EEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceE
Q 001248 817 PEEAVPCFALSKNDS-YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV 894 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~-~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~ 894 (1114)
......+++|+|+++ +++++. ++.|..|+..++ ...+..+...+.+++++| +++++++...++.|.+||..+++.
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~~d~~~g~~ 102 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNK-QGHLIACSHGLRRLERQREPGGEW 102 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECT-TCCEEEEETTTTEEEEECSTTCCE
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECC-CCcEEEEecCCCeEEEEcCCCCcE
Confidence 345578899999999 566665 799999999876 556666677899999999 888888777778999999988775
Q ss_pred EEeecc----cccCeeEEEEcCCCCEEEEEeC-----------------CCcEEEEeCCCCccccccccccCCCCCCCCC
Q 001248 895 KSKLKG----HSKRITGLAFSHALNVLVSSGA-----------------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQ 953 (1114)
Q Consensus 895 ~~~l~~----h~~~V~~l~~s~d~~~l~s~s~-----------------D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 953 (1114)
...... ....+++++++|+|+++++.+. .+.|..++.. ++.. .+ . ... .
T Consensus 103 ~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~---~~--~-~~~---~ 172 (296)
T 3e5z_A 103 ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS---AP--I-RDR---V 172 (296)
T ss_dssp EEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE---EE--E-CCC---S
T ss_pred EEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEE---Ee--e-cCC---C
Confidence 433322 1235678999999999987431 2345555444 2211 11 1 111 2
Q ss_pred CceEEEEccCCcEEEEE-eCCeEEEEEcC-CCce---eeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCe
Q 001248 954 SDTRVQFHQDQIHFLVV-HETQLAIFETT-KLEC---VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1028 (1114)
Q Consensus 954 ~i~~v~fspdg~~l~~~-~d~~i~iwd~~-~~~~---~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~ 1028 (1114)
....++|+|||+.+++. .++.|.+|++. +++. ...+ ..+...+..++++++|+++++. ++.|.+||.. ++
T Consensus 173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~--~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~ 247 (296)
T 3e5z_A 173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF--TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GD 247 (296)
T ss_dssp SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE--CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SC
T ss_pred CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe--eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CC
Confidence 45889999999999553 56899999987 4554 2333 3456677899999999866655 8899999986 77
Q ss_pred eeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCC
Q 001248 1029 LRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1080 (1114)
Q Consensus 1029 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~ 1080 (1114)
.+..+. .+.+ +.+++|...|++.|++++.+ .+.-++..+.
T Consensus 248 ~~~~~~----~~~~-------~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~ 287 (296)
T 3e5z_A 248 ELGRVL----TPQT-------TSNLCFGGPEGRTLYMTVST-EFWSIETNVR 287 (296)
T ss_dssp EEEEEE----CSSC-------CCEEEEESTTSCEEEEEETT-EEEEEECSCC
T ss_pred EEEEEE----CCCC-------ceeEEEECCCCCEEEEEcCC-eEEEEEcccc
Confidence 776665 2211 33788853367888888765 3344444443
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.52 E-value=2e-12 Score=142.29 Aligned_cols=274 Identities=10% Similarity=0.025 Sum_probs=185.1
Q ss_pred cCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCcccccccccc
Q 001248 721 ESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLW 800 (1114)
Q Consensus 721 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w 800 (1114)
+.++.+.++|..+.+........ ............+.+. +++.+++...++.|.+||..
T Consensus 14 ~~~~~l~~~d~~t~~~~~~i~~~-~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~------------------- 72 (328)
T 3dsm_A 14 YSNATLSYYDPATCEVENEVFYR-ANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDIN------------------- 72 (328)
T ss_dssp SCCBEEEEEETTTTEEECSHHHH-HHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETT-------------------
T ss_pred CCCceEEEEECCCCEEhhhhHhh-hcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECc-------------------
Confidence 34789999998865432222100 0001122345677774 44555555667888888754
Q ss_pred CCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCC-----CCeEEEEEecCCCcE
Q 001248 801 QPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-----PAATFLAFHPQDNNI 874 (1114)
Q Consensus 801 ~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~-----~~i~~l~~sp~d~~~ 874 (1114)
+++.+... . .......++++++++..++.. ++.|.+||..+++....+.... .....+++ . ++++
T Consensus 73 ---t~~~~~~i-~---~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~l 143 (328)
T 3dsm_A 73 ---TFKEVGRI-T---GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYV 143 (328)
T ss_dssp ---TCCEEEEE-E---CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEE
T ss_pred ---ccEEEEEc-C---CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEE
Confidence 33332221 1 235678899999996655553 8999999999988776655332 14566777 4 6666
Q ss_pred EEEEe-CCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCC----------CcEEEEeCCCCccccccccc
Q 001248 875 IAIGM-DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD----------SQLCVWSSDGWEKQKNRFLQ 943 (1114)
Q Consensus 875 la~g~-~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D----------~~v~iwd~~~~~~~~~~~~~ 943 (1114)
+++.. .++.|.+||+.+++.+..+... ....+++++++|++++++..+ +.|.+||..+++... .+.
T Consensus 144 yv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~--~~~ 220 (328)
T 3dsm_A 144 YVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK--QFK 220 (328)
T ss_dssp EEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE--EEE
T ss_pred EEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE--EEe
Confidence 66654 4889999999999888777643 345789999999988877655 789999998865432 122
Q ss_pred cCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEE-----EcCCe
Q 001248 944 IPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYAC-----FLDAT 1018 (1114)
Q Consensus 944 ~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~-----s~Dg~ 1018 (1114)
...+ .....++|+||+++|.++.. .|.+||..+++.........+...+..++++|++..|+++ ..++.
T Consensus 221 ~~~g-----~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~ 294 (328)
T 3dsm_A 221 FKLG-----DWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGI 294 (328)
T ss_dssp CCTT-----CCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEE
T ss_pred cCCC-----CCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCE
Confidence 2222 14689999999999988654 9999999988764322222224678999999955555444 46789
Q ss_pred EEEEEcCCCeeeEEeC
Q 001248 1019 VCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 1019 I~vwd~~~~~~~~~~~ 1034 (1114)
|.+||.. |+++.++.
T Consensus 295 V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 295 VYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp EEEECTT-CCEEEEEE
T ss_pred EEEECCC-CCEEEEEE
Confidence 9999998 99888776
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-08 Score=125.91 Aligned_cols=608 Identities=11% Similarity=0.089 Sum_probs=320.6
Q ss_pred CCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEE
Q 001248 358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 437 (1114)
Q Consensus 358 ~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 437 (1114)
...|+++.-..+|. |=.|+.+| +..||-.+ . +.+..... +.. ...-....|.+|...++|..|.+
T Consensus 18 ~n~V~~I~qD~~G~--lWigT~~G-L~ryDG~~---f-----~~~~~~~~--~~~--~~~l~~n~I~~i~~d~~g~~lWi 82 (781)
T 3v9f_A 18 NNYVLSITQDKQGF--LWFATEEG-LNKFDGTR---F-----ITYYKEEQ--SSS--VQSITGNELNEVYTDPVQPVIWI 82 (781)
T ss_dssp CSBEEEEEECTTSC--EEEEESSC-EEEECSSS---E-----EEECCCSS--CSS--SCCCSCSCEEEEEECSSSSEEEE
T ss_pred cCEeEEEEECCCCC--EEEccCCc-CccccCCc---e-----EEEEcCCC--CCc--cccccccccceEEEcCCCCEEEE
Confidence 46799999999997 44456665 66677332 1 22211000 000 00012347999999988884556
Q ss_pred EeCCCeEEEEEccCCceeeeeEe-ecc---ccCCeeEEEecC--CCCeeEEEEecCCCCEEEEeCCCCcceeEeec----
Q 001248 438 AYSRHIVQIYSYHGGDEVRQHLE-IDA---HVGGVNDIAFSH--PNKQLCVITCGDDKTIKVWDATNGAKQYIFEG---- 507 (1114)
Q Consensus 438 ~~~dg~i~iwd~~~~~~~~~~~~-l~~---h~~~V~~v~~s~--d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---- 507 (1114)
|+.++-+..||..+++....... ... ....|.++.... ++. +..++.++.|..+|..+++.. .+..
T Consensus 83 gt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~-~~~~~~~~ 158 (781)
T 3v9f_A 83 ATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFT-HYNKSTVP 158 (781)
T ss_dssp EESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEE-EESTTTCT
T ss_pred EeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEE-eeccCccc
Confidence 77774599999987653321000 000 123688888877 665 334443456889997766543 2221
Q ss_pred --cccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCC
Q 001248 508 --HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 585 (1114)
Q Consensus 508 --h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~ 585 (1114)
....|.++.. +.++ .|..++.++-|..||..+..... +... +... .......+..+..+++
T Consensus 159 ~l~~~~i~~i~~--d~~g-~lwigt~~~Gl~~~~~~~~~~~~-~~~~----------~~~~---~~l~~~~i~~i~~d~~ 221 (781)
T 3v9f_A 159 ALPSEQTWTATE--AEDG-KLYIGHVEGGLSILSLNDKSVKH-FVHD----------PQNP---NSLPGNDVRCIYKDTN 221 (781)
T ss_dssp TCSCCCEEEEEE--EETT-EEEEEETTTEEEEEETTTTEEEE-ECC---------------------CCSSEEEEEECTT
T ss_pred CCCccceEEEEE--CCCC-CEEEEecCCCeEEEcCCCCceEe-eecC----------CCCc---ccCCCCceeEEEEcCC
Confidence 1245777663 3344 45556666568888876532211 1100 0000 0001123444445555
Q ss_pred CCEEEEEeCCCeEEEEECCCcceEEEeccC-----CCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeecccc
Q 001248 586 KNRFLAAGDDFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL 660 (1114)
Q Consensus 586 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 660 (1114)
+. |..++.+ -+.+||..+++........ -....|.++...++|.+. .|+..+-|.+++..++. . ..+...
T Consensus 222 g~-lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~-~-~~~~~~ 296 (781)
T 3v9f_A 222 GN-IWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLW-IATELNGIMILDLQQNQ-F-LLPEQI 296 (781)
T ss_dssp CC-EEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEE-EEESSSCEEEEETTCC----------
T ss_pred CC-EEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEE-EEeCCCCeEEECCCCCe-e-eeeecc
Confidence 54 4445555 6899998776543221111 112457888888887655 46665678888876652 1 111100
Q ss_pred ccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccc
Q 001248 661 AYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQC 740 (1114)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~ 740 (1114)
............ .+... ............+-.|+.++-+..++......
T Consensus 297 ~f~~~~~~~~~~-~l~~~--------------------------~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~---- 345 (781)
T 3v9f_A 297 RFEFIREGDNNY-SLSNA--------------------------SARYIFQDSFNNIWIGTWGGGINFISNAPPTF---- 345 (781)
T ss_dssp -CEEECBCSSTT-SBSSS--------------------------CEEEEEECSSCCEEEEEBSSCEEEECSSCCSC----
T ss_pred ccccccCCCCCC-CCCCC--------------------------eEEEEEEeCCCCEEEEecCCeEEEeCCCCCcc----
Confidence 000000000000 00000 00000011123344555556666666553221
Q ss_pred ccccc------CccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCC
Q 001248 741 RSLRL------PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 814 (1114)
Q Consensus 741 ~~~~~------~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~ 814 (1114)
..+.. +.......|.++...++|. |..++.++-+..|+.....+. .+.. . .
T Consensus 346 ~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~------------~~~~-~---------~ 402 (781)
T 3v9f_A 346 HTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAI------------YNKE-N---------R 402 (781)
T ss_dssp EEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEE------------CC--------------
T ss_pred eeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEE------------EccC-C---------C
Confidence 11110 1111345789999988887 445555555666665422110 0000 0 0
Q ss_pred CCCCCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCcccccc--CCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc
Q 001248 815 SNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATF--MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 892 (1114)
Q Consensus 815 ~~~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~--~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~ 892 (1114)
......|.+++..++|.+.+...++.|..++..+++..... ......|.++...+ ++.+.+ |+. +-|..||..++
T Consensus 403 ~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~~~ 479 (781)
T 3v9f_A 403 ELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-NKKIWI-GTH-AGVFVIDLASK 479 (781)
T ss_dssp -CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-TSEEEE-EET-TEEEEEESSSS
T ss_pred CCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-CCCEEE-EEC-CceEEEeCCCC
Confidence 01346688898888887666444678999998776543222 12345789998887 666554 555 55889998876
Q ss_pred eEEEeeccc-----ccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEE
Q 001248 893 EVKSKLKGH-----SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 967 (1114)
Q Consensus 893 ~~~~~l~~h-----~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l 967 (1114)
+........ ...|.+++..++|.+.+.....| |..|+..+++... .....+ .....|.++...++|.+.
T Consensus 480 ~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~~---~~~~~~--l~~~~i~~i~~d~~g~lW 553 (781)
T 3v9f_A 480 KVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVRK---FNQYEG--FCSNTINQIYRSSKGQMW 553 (781)
T ss_dssp SCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEEE---ECTTTT--CSCSCEEEEEECTTSCEE
T ss_pred eEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEEE---ccCCCC--CCCCeeEEEEECCCCCEE
Confidence 543322211 46799999999888766544345 7888887643221 111111 112467889999999987
Q ss_pred EEEeCCeEEEEEcCCCceeeeeecCC-CCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCC
Q 001248 968 LVVHETQLAIFETTKLECVKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSS 1046 (1114)
Q Consensus 968 ~~~~d~~i~iwd~~~~~~~~~~~~~~-h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1046 (1114)
+.+.+|-+..||..+++...--...+ ....|.++...++|.+.++ +.+| |..|+..+++.. .+.....++. .
T Consensus 554 i~T~~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~G-l~~~~~~~~~~~-~~~~~dGl~~----~ 626 (781)
T 3v9f_A 554 LATGEGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWAS-TNTG-ISCYITSKKCFY-TYDHSNNIPQ----G 626 (781)
T ss_dssp EEETTEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEE-CSSC-EEEEETTTTEEE-EECGGGTCCS----S
T ss_pred EEECCCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEE-cCCc-eEEEECCCCceE-EecccCCccc----c
Confidence 77664444889987765432211111 1346889999999986664 4455 777888776543 3332222221 1
Q ss_pred CccceEEEecCCCCCeEEEEeCCCcEEEEeccC
Q 001248 1047 NVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1047 ~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~ 1079 (1114)
....-++...+ +|. |..|+.+| +..++...
T Consensus 627 ~f~~~~~~~~~-~G~-l~~g~~~G-l~~f~p~~ 656 (781)
T 3v9f_A 627 SFISGCVTKDH-NGL-IYFGSING-LCFFNPDI 656 (781)
T ss_dssp CEEEEEEEECT-TSC-EEEEETTE-EEEECSCC
T ss_pred ccccCceEECC-CCE-EEEECCCc-eEEEChhh
Confidence 12222454555 555 55567677 55667554
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.4e-13 Score=164.38 Aligned_cols=242 Identities=12% Similarity=0.063 Sum_probs=162.8
Q ss_pred CCCCccEEEEeeCCCEEEEEe------CCeEEEEEcCCCccc-cccCCCCCCeEEEEEecCCCcEEEEEeCCCc------
Q 001248 817 PEEAVPCFALSKNDSYVMSAS------GGKISLFNMMTFKTM-ATFMPPPPAATFLAFHPQDNNIIAIGMDDSS------ 883 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~~l~~~~------dg~i~iwd~~~~~~~-~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~------ 883 (1114)
|...+.+++|||||++||.+. +.+|++||+.+++.+ .... .......++|+| ||+.|+.++.|..
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~-~~~~~~~~~wsp-Dg~~l~~~~~d~~~~~~~~ 196 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVI-EGGKYATPKWTP-DSKGFYYEWLPTDPSIKVD 196 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCB-SCCTTCCCEECT-TSSEEEEEECCCCTTSCGG
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCccc-CcccccceEEec-CCCEEEEEEecCCCCCccc
Confidence 455688999999999999553 257999999998865 2111 111126899999 8999998888776
Q ss_pred -------EEEEEcccce----EEEeecccccCeeEEEEcCCCCEEEEEeCCC----cEEEEeCCCCccccccccccCCCC
Q 001248 884 -------IQIYNVRVDE----VKSKLKGHSKRITGLAFSHALNVLVSSGADS----QLCVWSSDGWEKQKNRFLQIPTGR 948 (1114)
Q Consensus 884 -------v~iwd~~~~~----~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~----~v~iwd~~~~~~~~~~~~~~~~~~ 948 (1114)
|++|++.+++ ++.....|...+.++.|||||++|+.++.++ .|.+|+..+++. ..+...
T Consensus 197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~---~~l~~~--- 270 (695)
T 2bkl_A 197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF---RLLVKG--- 270 (695)
T ss_dssp GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC---EEEEEC---
T ss_pred cCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce---EEeecC---
Confidence 9999998765 4445555767889999999999999887766 567776544322 112111
Q ss_pred CCCCCCceEEEEccCCcEEEEEe----CCeEEEEEcCCCce--eeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEE
Q 001248 949 TPTAQSDTRVQFHQDQIHFLVVH----ETQLAIFETTKLEC--VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVF 1022 (1114)
Q Consensus 949 ~~~~~~i~~v~fspdg~~l~~~~----d~~i~iwd~~~~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vw 1022 (1114)
. ..+....+ ++|.+++.+. ++.|.+||+.+++. ...+....+...+..++|+ ++.++++...|+..+||
T Consensus 271 ~---~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~ 345 (695)
T 2bkl_A 271 V---GAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVR 345 (695)
T ss_dssp S---SCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred C---CceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence 1 13455555 6676333343 47899999987753 2333322225568888998 77788899999998888
Q ss_pred EcC-CCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEE-EEe---CCCcEEEEeccCCC
Q 001248 1023 SAA-NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA-LGL---SDGGVHVFEPLESE 1081 (1114)
Q Consensus 1023 d~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~-s~~---~Dg~v~vW~i~~~~ 1081 (1114)
.++ +++....+. ++. ...+. .++++| |++.++ +.+ ..++|++||+.+++
T Consensus 346 ~~~~~g~~~~~l~----~~~---~~~v~--~~~~s~-d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 346 VATLKGKPVRTVQ----LPG---VGAAS--NLMGLE-DLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEETTCCEEEECC----CSS---SSEEC--CCBSCT-TCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEeCCCCeeEEec----CCC---CeEEE--EeecCC-CCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 765 455555544 221 11133 567788 566555 332 34789999999887
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.7e-11 Score=133.68 Aligned_cols=204 Identities=9% Similarity=0.005 Sum_probs=140.6
Q ss_pred ccEEEEeeCCCEEEEEe---CCeEEEEEcCCCccccc-cCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEE
Q 001248 821 VPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 896 (1114)
Q Consensus 821 v~~v~~s~d~~~l~~~~---dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~ 896 (1114)
...++++|||++|+++. ++.|.++| .+++.+.+ +.... ++.+.|.+.+.+++.+.||.+.++|. +++...
T Consensus 127 p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~ 200 (373)
T 2mad_H 127 SWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAG 200 (373)
T ss_pred ccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEE
Confidence 34678899999888775 36799999 99888777 65322 24556645567777888999999999 877663
Q ss_pred eec-----ccccCe-eEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCC----CCCCCCCceEEEEccCCcE
Q 001248 897 KLK-----GHSKRI-TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG----RTPTAQSDTRVQFHQDQIH 966 (1114)
Q Consensus 897 ~l~-----~h~~~V-~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~----~~~~~~~i~~v~fspdg~~ 966 (1114)
... ....++ ....+.+++..++..+.++.+.+.|+.+........+..... ..........++++||++.
T Consensus 201 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~ 280 (373)
T 2mad_H 201 AGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDG 280 (373)
T ss_pred EEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCE
Confidence 321 111221 234667776665555578899999997643221111111110 0001123345889999998
Q ss_pred EEEEe-----------CCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCC-EEEEEE-cCCeEEEEEcCCCeeeEEe
Q 001248 967 FLVVH-----------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRCRI 1033 (1114)
Q Consensus 967 l~~~~-----------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~s-~Dg~I~vwd~~~~~~~~~~ 1033 (1114)
+.++. .+.|.++|..+++.+..+.. .....+++|+|||+ +++++. .++.|.|||+.+++.+.++
T Consensus 281 lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~---g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 281 IYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL---GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC---CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 88742 24799999999999998864 33689999999999 777777 4899999999999999874
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-12 Score=160.68 Aligned_cols=244 Identities=14% Similarity=0.089 Sum_probs=168.5
Q ss_pred CCCCccEEEEeeCCCEEEEEe--CC----eEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCc-------
Q 001248 817 PEEAVPCFALSKNDSYVMSAS--GG----KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSS------- 883 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~~l~~~~--dg----~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~------- 883 (1114)
+...+..++|||||++||.+. +| .|++||+.+++....... ...+..++|+| ||+.|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~-~~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTH-DGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECT-TSSEEEEEECCCCSSCCSSS
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc-CcccceEEEEe-CCCEEEEEEECCcccccccc
Confidence 334678899999999999876 23 899999999887653221 12367899999 8999988887766
Q ss_pred ---------EEEEEcccce----EEEeecccccCeeEEEEcCCCCEEEEEeC-----CCcEEEEeCCC------Cccccc
Q 001248 884 ---------IQIYNVRVDE----VKSKLKGHSKRITGLAFSHALNVLVSSGA-----DSQLCVWSSDG------WEKQKN 939 (1114)
Q Consensus 884 ---------v~iwd~~~~~----~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-----D~~v~iwd~~~------~~~~~~ 939 (1114)
|++|++.+++ ++.....|...+.++.|||||++|+.++. +..|.+||+.+ +... .
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~-~ 279 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILK-W 279 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC-C
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccc-e
Confidence 9999998865 33333445666889999999999988765 56899999976 3211 1
Q ss_pred cccccCCCCCCCCCCceEEEEccCCcEEEE-Ee----CCeEEEEEcCCCce--eeeeecCCCCcCeeEEEECCCCCEEEE
Q 001248 940 RFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VH----ETQLAIFETTKLEC--VKQWVPRESSAPITHATFSCDSQLVYA 1012 (1114)
Q Consensus 940 ~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~----d~~i~iwd~~~~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~s 1012 (1114)
..+. .+. ..+. ..|+|+|+.|+. +. ...|.+||+.++.. ...+..+.....+..++|++++.++++
T Consensus 280 ~~l~---~~~---~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~ 352 (710)
T 2xdw_A 280 VKLI---DNF---EGEY-DYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLC 352 (710)
T ss_dssp EEEE---CSS---SSCE-EEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEE
T ss_pred EEee---CCC---CcEE-EEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEE
Confidence 1111 111 1233 358999998887 43 23699999988742 334442211236888999988888888
Q ss_pred EEcCCe--EEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEE-EEe---CCCcEEEEeccCCC
Q 001248 1013 CFLDAT--VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA-LGL---SDGGVHVFEPLESE 1081 (1114)
Q Consensus 1013 ~s~Dg~--I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~-s~~---~Dg~v~vW~i~~~~ 1081 (1114)
...|+. |++|++.+|+.+..+. ++.+ .+..+.++| +++.++ +.+ ..++|+.||+.+++
T Consensus 353 ~~~~g~~~l~~~~~~~g~~~~~l~----~~~~------~v~~~~~s~-d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 353 YLHDVKNTLQLHDLATGALLKIFP----LEVG------SVVGYSGQK-KDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEETTEEEEEEEETTTCCEEEEEC----CCSS------EEEEEECCT-TCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEECCEEEEEEEECCCCCEEEecC----CCCc------eEEEEecCC-CCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 888885 6667877888777766 2211 223678888 455544 333 34799999998877
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=4.7e-11 Score=129.67 Aligned_cols=237 Identities=10% Similarity=0.070 Sum_probs=163.8
Q ss_pred cceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCC
Q 001248 752 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 831 (1114)
Q Consensus 752 ~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~ 831 (1114)
..+.+++++++|..+++...++.|..|+... ........ .....+.+++++++|+
T Consensus 57 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-----------------------~~~~~~~~--~~~~~~~~i~~~~~g~ 111 (299)
T 2z2n_A 57 AKVMCLTISSDGEVWFTENAANKIGRITKKG-----------------------IIKEYTLP--NPDSAPYGITEGPNGD 111 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTS-----------------------CEEEEECS--STTCCEEEEEECTTSC
T ss_pred CceeeEEECCCCCEEEeCCCCCeEEEECCCC-----------------------cEEEEeCC--CcCCCceeeEECCCCC
Confidence 4577899999998777777678888776431 11000011 1344678899999998
Q ss_pred EEEEEe-CCeEEEEEcCCCccccc-cCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEe-ecccccCeeEE
Q 001248 832 YVMSAS-GGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK-LKGHSKRITGL 908 (1114)
Q Consensus 832 ~l~~~~-dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~-l~~h~~~V~~l 908 (1114)
++++.. ++.|.+||. +++.... .......+..+++++ +++++++...++.|..||. +++.... +..+...+.++
T Consensus 112 l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i 188 (299)
T 2z2n_A 112 IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGS-DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGI 188 (299)
T ss_dssp EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE
T ss_pred EEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcC-CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeE
Confidence 888776 789999998 5443322 233455789999999 7888887777889999998 6665432 34445678899
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCeEEEEEcCCCceee
Q 001248 909 AFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVK 987 (1114)
Q Consensus 909 ~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~i~iwd~~~~~~~~ 987 (1114)
++.++|+++++...++.|.+|+. +++... .... .. ...+..++++++|+++++. .++.|..||. +++ +.
T Consensus 189 ~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~-~~---~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~ 258 (299)
T 2z2n_A 189 TKGNDDALWFVEIIGNKIGRITT-SGEITE---FKIP-TP---NARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IE 258 (299)
T ss_dssp EECTTSSEEEEETTTTEEEEECT-TCCEEE---EECS-ST---TCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EE
T ss_pred EECCCCCEEEEccCCceEEEECC-CCcEEE---EECC-CC---CCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eE
Confidence 99999998887777889999998 544221 1111 11 1357899999999977765 6789999998 443 34
Q ss_pred eeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCe
Q 001248 988 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1028 (1114)
Q Consensus 988 ~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~ 1028 (1114)
.+....+...+.++++ ++|++.++.+ .+.|..++..+++
T Consensus 259 ~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 259 EYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp EEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred EEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence 4433345678999999 8888766554 6777778877654
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.50 E-value=2.8e-12 Score=137.09 Aligned_cols=239 Identities=10% Similarity=0.048 Sum_probs=166.7
Q ss_pred CccEEEEeeCCCEEE-EEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEe
Q 001248 820 AVPCFALSKNDSYVM-SAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 897 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~-~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~ 897 (1114)
...+++++++|++++ +.. ++.|.+|+..+.........+...+.++++++ +++++++.. ++.|++||..+......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQTVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCEEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEeee
Confidence 678899999999777 434 78999999866543322223335688999999 788666655 88999999876543322
Q ss_pred ecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCeEE
Q 001248 898 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLA 976 (1114)
Q Consensus 898 l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~i~ 976 (1114)
.......+.+++++++|+++++...++.|.+|+..+..... ..... ...+..++++++|+++++. .++.|.
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~-----~~~~~---~~~p~~i~~~~~g~l~v~~~~~~~i~ 174 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV-----LPFTG---LNDPDGVAVDNSGNVYVTDTDNNRVV 174 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE-----CCCCS---CCSCCCEEECTTCCEEEEEGGGTEEE
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe-----ecccc---CCCceeEEEeCCCCEEEEECCCCEEE
Confidence 22333568999999999988888888899999765432211 11111 1256889999999977764 578999
Q ss_pred EEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEec
Q 001248 977 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAH 1056 (1114)
Q Consensus 977 iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 1056 (1114)
+||..+........ .+...+.+++++++|.++++...++.|.+|+..+..... .. ..+ .-.+..++++
T Consensus 175 ~~~~~~~~~~~~~~--~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~-----~~~----~~~p~~i~~~ 242 (270)
T 1rwi_B 175 KLEAESNNQVVLPF--TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LP-----FTG----LNTPLAVAVD 242 (270)
T ss_dssp EECTTTCCEEECCC--SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CC-----CCS----CSCEEEEEEC
T ss_pred EEecCCCceEeecc--cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ec-----cCC----CCCceeEEEC
Confidence 99988766543322 223678999999999777777678899999987654432 11 011 0235589999
Q ss_pred CCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1057 PQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1057 ~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
+ +++++++...++.|+++++...+
T Consensus 243 ~-~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 243 S-DRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp T-TCCEEEEEGGGTEEEEECCCGGG
T ss_pred C-CCCEEEEECCCCEEEEEcCCCcc
Confidence 8 57888888899999999998766
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.49 E-value=7.4e-13 Score=162.33 Aligned_cols=247 Identities=9% Similarity=-0.047 Sum_probs=159.6
Q ss_pred CCCCceEEEEcCCCCeEEEEEec----CCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCC
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTN----VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~----dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1114)
|...+.+++|||||++|+++.+. +.+|++||+.+++.+.. ..+... ....++|||||
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~-----------------~~~~~~--~~~~~~wspDg 179 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV-----------------DVIEGG--KYATPKWTPDS 179 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS-----------------CCBSCC--TTCCCEECTTS
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC-----------------cccCcc--cccceEEecCC
Confidence 55578999999999985555443 35799999999875310 001111 12679999999
Q ss_pred CeEEEEeCCCe-------------EEEEEccCCcee-eeeEeeccccCCeeEEEecCCCCeeEEEEecCCC----CEEEE
Q 001248 433 SLFGVAYSRHI-------------VQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK----TIKVW 494 (1114)
Q Consensus 433 ~~las~~~dg~-------------i~iwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~----~i~iw 494 (1114)
+.|+.++.|.. |++|++.++... ........|...+..+.|||||+. |+.++.++ .|++|
T Consensus 180 ~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~l~~~ 257 (695)
T 2bkl_A 180 KGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY--LFVYILRGWSENDVYWK 257 (695)
T ss_dssp SEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC--EEEEEEETTTEEEEEEE
T ss_pred CEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE--EEEEEeCCCCceEEEEE
Confidence 99999988776 999999987632 122233456668899999999995 44444333 67777
Q ss_pred eCCCCcceeEeeccccCEEEEeeccCCCceEEEEEe---cCCeEEEEEcCCCCC--eeeecCC--CCeeEEEEEecCCCe
Q 001248 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA---LDGKIKAWLYDNLGS--RVDYEAP--GRWCTTMAYSADGTR 567 (1114)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~---~d~~i~~wd~~~~~~--~~~~~~~--~~~v~~~~~s~~g~~ 567 (1114)
|..+++ ...+..+...+....+ ++|.+++... .++.|.+||+.+... ...+..+ ...+..++++
T Consensus 258 ~~~~~~-~~~l~~~~~~~~~~~~---~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~----- 328 (695)
T 2bkl_A 258 RPGEKD-FRLLVKGVGAKYEVHA---WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV----- 328 (695)
T ss_dssp CTTCSS-CEEEEECSSCCEEEEE---ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-----
T ss_pred cCCCCc-eEEeecCCCceEEEEe---cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-----
Confidence 765554 4555556556655554 2345444443 257899999877542 1222211 2234444443
Q ss_pred EEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECC-CcceEEEeccCCCCCCcCeEEEcCCCCEEEEEe----CCCcE
Q 001248 568 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD-SVQLLTSIDADGGLPASPRIRFNKDGCLLAVST----NDNGI 642 (1114)
Q Consensus 568 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~----~dg~i 642 (1114)
++..+++...|+..++|.+. +++....+..+. ...+..++++|+++.++... ..++|
T Consensus 329 -----------------~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~v 390 (695)
T 2bkl_A 329 -----------------GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFTTPRQI 390 (695)
T ss_dssp -----------------TTEEEEEEEETTEEEEEEEETTCCEEEECCCSS-SSEECCCBSCTTCSEEEEEEEETTEEEEE
T ss_pred -----------------CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEE
Confidence 33367778889988888654 455566665432 23567888999998777443 34789
Q ss_pred EEEEccCCc
Q 001248 643 KILATSDGI 651 (1114)
Q Consensus 643 ~iwd~~~~~ 651 (1114)
++||+.++.
T Consensus 391 ~~~d~~~g~ 399 (695)
T 2bkl_A 391 YKTSVSTGK 399 (695)
T ss_dssp EEEETTTCC
T ss_pred EEEECCCCc
Confidence 999998873
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.48 E-value=5.3e-11 Score=131.61 Aligned_cols=246 Identities=13% Similarity=0.082 Sum_probs=163.1
Q ss_pred eccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCC
Q 001248 354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 433 (1114)
Q Consensus 354 ~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 433 (1114)
...+...+.+++|+|+|+ |++++..++.|.+||..+++.... ...+...+.+++|+|+|+
T Consensus 40 ~~~~~~~~~~~~~~~~g~-l~~~~~~~~~i~~~d~~~~~~~~~-------------------~~~~~~~~~~i~~~~dg~ 99 (333)
T 2dg1_A 40 ISKKGLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRP-------------------FVSHKANPAAIKIHKDGR 99 (333)
T ss_dssp EESSCCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEE-------------------EECSSSSEEEEEECTTSC
T ss_pred EeccCccccCcEECCCCC-EEEEECCCCEEEEEeCCCCcEEEE-------------------eeCCCCCcceEEECCCCc
Confidence 344777889999999999 688888899999999988765431 223556899999999999
Q ss_pred eEEEEeCC----CeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecC------CCCEEEEeCCCCccee
Q 001248 434 LFGVAYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD------DKTIKVWDATNGAKQY 503 (1114)
Q Consensus 434 ~las~~~d----g~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~------d~~i~iwd~~~~~~~~ 503 (1114)
++++...+ +.|.+||..++...... .-..+...+.+++++|+|+ ++++... .+.|..||..+++..
T Consensus 100 l~v~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~l~~~~~~~~~~~- 175 (333)
T 2dg1_A 100 LFVCYLGDFKSTGGIFAATENGDNLQDII-EDLSTAYCIDDMVFDSKGG--FYFTDFRGYSTNPLGGVYYVSPDFRTVT- 175 (333)
T ss_dssp EEEEECTTSSSCCEEEEECTTSCSCEEEE-CSSSSCCCEEEEEECTTSC--EEEEECCCBTTBCCEEEEEECTTSCCEE-
T ss_pred EEEEeCCCCCCCceEEEEeCCCCEEEEEE-ccCccCCcccceEECCCCC--EEEEeccccccCCCceEEEEeCCCCEEE-
Confidence 88887666 68999999887643211 1113455799999999998 5565543 345666675555433
Q ss_pred EeeccccCEEEEeeccCCCceEE-EEEecCCeEEEEEcCCCC-CeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEE
Q 001248 504 IFEGHEAPVYSVCPHHKENIQFI-FSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581 (1114)
Q Consensus 504 ~~~~h~~~v~~~~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~ 581 (1114)
.+..+...+..++|++ +++.+ ++.+.++.|.+||+.+.. ....+. ........+ ......++
T Consensus 176 ~~~~~~~~~~~i~~~~--dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~------~~~~~~~~~--------~~~~~~i~ 239 (333)
T 2dg1_A 176 PIIQNISVANGIALST--DEKVLWVTETTANRLHRIALEDDGVTIQPFG------ATIPYYFTG--------HEGPDSCC 239 (333)
T ss_dssp EEEEEESSEEEEEECT--TSSEEEEEEGGGTEEEEEEECTTSSSEEEEE------EEEEEECCS--------SSEEEEEE
T ss_pred EeecCCCcccceEECC--CCCEEEEEeCCCCeEEEEEecCCCcCccccc------ceEEEecCC--------CCCCCceE
Confidence 3333445577888754 55544 555568899999986422 221110 000000000 01344577
Q ss_pred ecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCC----CCCCcCeEEEcCCCCEEEEEeCCC
Q 001248 582 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVSTNDN 640 (1114)
Q Consensus 582 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~s~d~~~l~~~~~dg 640 (1114)
++++++.+++...++.|.+||. +++.+..+..+. +...+.+++|++|++.|++++.++
T Consensus 240 ~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 240 IDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred ECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 7777777777778899999998 566666665432 112478999999987777666553
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.47 E-value=6.8e-12 Score=134.12 Aligned_cols=239 Identities=8% Similarity=0.033 Sum_probs=160.1
Q ss_pred CceEEEEcCCCCeEEE-EEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEE
Q 001248 360 SPMSMDFHPVQQTLLL-VGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 438 (1114)
Q Consensus 360 ~v~~v~~spdg~~ll~-tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 438 (1114)
...+++++++|+ +++ +.+.++.|.+||..++.... ....+...+.+++++++|+++++.
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~-------------------~~~~~~~~p~~i~~~~~g~l~v~~ 84 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTV-------------------LPFNGLYQPQGLAVDGAGTVYVTD 84 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EE-------------------CCCCSCCSCCCEEECTTCCEEEEE
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccce-------------------EeeCCcCCcceeEECCCCCEEEEc
Confidence 789999999998 576 54678999999976654321 112233467889999999966665
Q ss_pred eCCCeEEEEEccCCceeeeeEeec-cccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEee
Q 001248 439 YSRHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 517 (1114)
Q Consensus 439 ~~dg~i~iwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 517 (1114)
. ++.|.+||..+..... +. .....+.+++++++|+ ++++...++.|.+|+..+.............+.++++
T Consensus 85 ~-~~~i~~~d~~~~~~~~----~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 85 F-NNRVVTLAAGSNNQTV----LPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp T-TTEEEEECTTCSCCEE----CCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred C-CCEEEEEeCCCceEee----eecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 5 8899999987654321 22 2335789999999998 6777777889999986554433322223345667776
Q ss_pred ccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCe
Q 001248 518 HHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS 597 (1114)
Q Consensus 518 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 597 (1114)
. ++|.++++...++.|.+||............... ....++++++|..+++...++.
T Consensus 158 ~--~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~---------------------~p~~i~~d~~g~l~v~~~~~~~ 214 (270)
T 1rwi_B 158 D--NSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDIT---------------------APWGIAVDEAGTVYVTEHNTNQ 214 (270)
T ss_dssp C--TTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCC---------------------SEEEEEECTTCCEEEEETTTSC
T ss_pred e--CCCCEEEEECCCCEEEEEecCCCceEeecccCCC---------------------CceEEEECCCCCEEEEECCCCc
Confidence 4 4556777777788999999875432221111112 2334555555556666667889
Q ss_pred EEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 598 IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 598 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
|.+|+........ ... .+...+.+++++++|+++++...++.|++++....
T Consensus 215 v~~~~~~~~~~~~-~~~-~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 215 VVKLLAGSTTSTV-LPF-TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp EEEECTTCSCCEE-CCC-CSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred EEEEcCCCCccee-ecc-CCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 9999987654333 221 22245789999999998888888999999987655
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.47 E-value=6.4e-12 Score=137.04 Aligned_cols=277 Identities=9% Similarity=0.049 Sum_probs=185.2
Q ss_pred EEccCcceeeeccc-----CceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCE
Q 001248 758 IFTNSGNAILALAS-----NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 832 (1114)
Q Consensus 758 ~~s~~~~~l~~~~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~ 832 (1114)
...|+++.+++... ++.|.+.|.. +++.+.....+ ..+ .++++|||++
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~----------------------t~~v~~~I~vG---~~P--~va~spDG~~ 91 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGE----------------------AGRVIGMIDGG---FLP--NPVVADDGSF 91 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETT----------------------TTEEEEEEEEC---SSC--EEEECTTSSC
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECC----------------------CCeEEEEEECC---CCC--cEEECCCCCE
Confidence 44678887776654 4677776643 44433322222 122 4999999998
Q ss_pred EEEEe-----------CCeEEEEEcCCCccccccCCCC-------CCeEEEEEecCCCcEEEEEeC--CCcEEEEEcccc
Q 001248 833 VMSAS-----------GGKISLFNMMTFKTMATFMPPP-------PAATFLAFHPQDNNIIAIGMD--DSSIQIYNVRVD 892 (1114)
Q Consensus 833 l~~~~-----------dg~i~iwd~~~~~~~~~~~~~~-------~~i~~l~~sp~d~~~la~g~~--dg~v~iwd~~~~ 892 (1114)
+.+++ ++.|.+||..+++.+.++.... .....++|+| ||++|.++.. ++.|.++|+.++
T Consensus 92 lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~lyVan~~~~~~VsVID~~t~ 170 (386)
T 3sjl_D 92 IAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGK 170 (386)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTT
T ss_pred EEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC-CCCEEEEEEcCCCCeEEEEECCCC
Confidence 87664 4679999999999887764321 2466799999 8888887763 689999999999
Q ss_pred eEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC-CccccccccccCCCCCCCCCCc-eEEEE-ccCCcEEEE
Q 001248 893 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG-WEKQKNRFLQIPTGRTPTAQSD-TRVQF-HQDQIHFLV 969 (1114)
Q Consensus 893 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~i-~~v~f-spdg~~l~~ 969 (1114)
+.+.++.-.. . ...+....+.+++.+.||++.+.++.+ ++..... ...+. .....+ ....| .++|+++.+
T Consensus 171 ~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~-~~~~~---~~~~~~~~~~~~~~~dG~~~~v 243 (386)
T 3sjl_D 171 AFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH-TEVFH---PEDEFLINHPAYSQKAGRLVWP 243 (386)
T ss_dssp EEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE-CCCCS---CTTSCBCSCCEEETTTTEEEEE
T ss_pred cEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEee-cceec---cccccccccceeEcCCCcEEEE
Confidence 9988875321 1 233444556777888899999988876 4431111 01111 000112 22466 478988888
Q ss_pred EeCCeEEEEEcCCCc--eeeeeec--------CCCCcCeeEEEECCCCCEEEEEEc----------CCeEEEEEcCCCee
Q 001248 970 VHETQLAIFETTKLE--CVKQWVP--------RESSAPITHATFSCDSQLVYACFL----------DATVCVFSAANLKL 1029 (1114)
Q Consensus 970 ~~d~~i~iwd~~~~~--~~~~~~~--------~~h~~~v~~l~~s~dg~~l~s~s~----------Dg~I~vwd~~~~~~ 1029 (1114)
+.++.|.+.|..+.. ....+.. .-.......++++++++.|++... .+.|.+.|+.+++.
T Consensus 244 s~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv 323 (386)
T 3sjl_D 244 TYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER 323 (386)
T ss_dssp BTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred eCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeE
Confidence 888999999997654 3333320 001223445788999999988764 25799999999999
Q ss_pred eEEeCCCcccCCCCCCCCccceEEEecCCCCC-eEEEEe-CCCcEEEEeccCCC
Q 001248 1030 RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGL-SDGGVHVFEPLESE 1081 (1114)
Q Consensus 1030 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~-~l~s~~-~Dg~v~vW~i~~~~ 1081 (1114)
+.++. .+.. .+ .+.+++ |++ +|+++. .++.|.|+|..+++
T Consensus 324 ~~~i~----vg~~-----~~--~lavs~-D~~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 324 LAKFE----MGHE-----ID--SINVSQ-DEKPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp EEEEE----EEEE-----EC--EEEECS-SSSCEEEEEETTTTEEEEEETTTCC
T ss_pred EEEEE----CCCC-----cc--eEEECC-CCCeEEEEEcCCCCeEEEEECCCCc
Confidence 99887 3222 33 799999 454 666654 58999999999998
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.9e-08 Score=123.30 Aligned_cols=509 Identities=11% Similarity=0.069 Sum_probs=282.6
Q ss_pred CCceEEEEcC--CCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 359 SSPMSMDFHP--VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 359 ~~v~~v~~sp--dg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
..|+++.... +|. |-.|+.++.|..||..+++.... .... ...-....|.++...++|.+.+
T Consensus 115 ~~i~~i~~d~~~~g~--lwi~t~~~gl~~~~~~~~~~~~~------~~~~--------~~~l~~~~i~~i~~d~~g~lwi 178 (781)
T 3v9f_A 115 NDVTHITSSVQAGKG--LWVCTYYRGIEYLDIATGKFTHY------NKST--------VPALPSEQTWTATEAEDGKLYI 178 (781)
T ss_dssp SCEEEEEECSSTTSE--EEEEESSSCEEEEETTTTEEEEE------STTT--------CTTCSCCCEEEEEEEETTEEEE
T ss_pred CcceEEEecCccCCC--EEEEECCCCeeEEECCCCeEEee------ccCc--------ccCCCccceEEEEECCCCCEEE
Confidence 4688998888 776 33455566788999877654321 0000 0001234688998888887665
Q ss_pred EEeCCCeEEEEEccCCceeeeeEee----ccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeec-----
Q 001248 437 VAYSRHIVQIYSYHGGDEVRQHLEI----DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG----- 507 (1114)
Q Consensus 437 s~~~dg~i~iwd~~~~~~~~~~~~l----~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----- 507 (1114)
|+.++-+..||..+++........ .-....|.++...++|. +.+ |+.+ -+.+||..+++.......
T Consensus 179 -gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~--lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~ 253 (781)
T 3v9f_A 179 -GHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGN--IWI-GTSK-GLALFNANTETFTNFHNNPGNIH 253 (781)
T ss_dssp -EETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCC--EEE-EETT-EEEEEETTTTEEEC---------
T ss_pred -EecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCC--EEE-EeCC-cHheECCCCCcEEEEEcCCCccc
Confidence 555545889998876532210000 01134689999988887 333 3444 688999776654322111
Q ss_pred --cccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCC
Q 001248 508 --HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 585 (1114)
Q Consensus 508 --h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~ 585 (1114)
....|.++.. +.+| .|..|+..+-|.++|..+......... ....+. .+... .+.....+..+..+.+
T Consensus 254 ~l~~~~i~~i~~--d~~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~---~f~~~~-~~~~~---~~l~~~~v~~i~~D~~ 323 (781)
T 3v9f_A 254 GALSSYIFSIKQ--LKDN-KLWIATELNGIMILDLQQNQFLLPEQI---RFEFIR-EGDNN---YSLSNASARYIFQDSF 323 (781)
T ss_dssp --CCCCEEEEEE--CTTS-EEEEEESSSCEEEEETTCC------------CEEEC-BCSST---TSBSSSCEEEEEECSS
T ss_pred cccCceEEEEEE--CCCC-CEEEEeCCCCeEEECCCCCeeeeeecc---cccccc-CCCCC---CCCCCCeEEEEEEeCC
Confidence 2356887774 4454 455666656688888765432211000 000000 00000 0112234555555555
Q ss_pred CCEEEEEeCCCeEEEEECCCcceEEEec-------cCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeecc
Q 001248 586 KNRFLAAGDDFSIKFWDMDSVQLLTSID-------ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE 658 (1114)
Q Consensus 586 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 658 (1114)
|+ +-.|+.++-|..|+..++....... ..-....|.++...++|.+. +|+.++.|..|+..++. ...+.
T Consensus 324 g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~--~~~~~ 399 (781)
T 3v9f_A 324 NN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFENGKRV--AIYNK 399 (781)
T ss_dssp CC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEETTEEE--EECC-
T ss_pred CC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEECCCCe--EEEcc
Confidence 54 6667777788899887654332211 00112357788888887755 56666678888865431 11110
Q ss_pred ccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCc
Q 001248 659 NLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPN 738 (1114)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~ 738 (1114)
. .
T Consensus 400 ~--~---------------------------------------------------------------------------- 401 (781)
T 3v9f_A 400 E--N---------------------------------------------------------------------------- 401 (781)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred C--C----------------------------------------------------------------------------
Confidence 0 0
Q ss_pred cccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCC
Q 001248 739 QCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPE 818 (1114)
Q Consensus 739 ~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~ 818 (1114)
.......|.++...++|...+ ++.++-+..++... +........ ....
T Consensus 402 --------~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~----------------------~~~~~~~~~-~~~~ 449 (781)
T 3v9f_A 402 --------RELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRL----------------------KKFQIIELE-KNEL 449 (781)
T ss_dssp ----------CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSS----------------------CEEEECCST-TTCC
T ss_pred --------CCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCC----------------------CcEEEeccC-CCCC
Confidence 000235678888887877444 55545566665432 211111000 0134
Q ss_pred CCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCC-----CCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccce
Q 001248 819 EAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPP-----PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE 893 (1114)
Q Consensus 819 ~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~ 893 (1114)
..|.++...++|.+.+... +.|..||..+++........ ...|.++...+ +|.+.+ |+.++-|..||..+++
T Consensus 450 ~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~ 526 (781)
T 3v9f_A 450 LDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDS-EGRFWI-GTFGGGVGIYTPDMQL 526 (781)
T ss_dssp CCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECT-TCCEEE-EESSSCEEEECTTCCE
T ss_pred CeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcC-CCCEEE-EEcCCCEEEEeCCCCe
Confidence 5688888888887555444 67999998876543322111 35789999888 676555 5554458889987765
Q ss_pred EEEeecc---cccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE
Q 001248 894 VKSKLKG---HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 970 (1114)
Q Consensus 894 ~~~~l~~---h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~ 970 (1114)
...-... ....|.++...++|.+.++.. +|.|..||..+++... .....+-. ...+.++...++|.+.+++
T Consensus 527 ~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~~---~~~~~gl~--~~~i~~i~~d~~g~lW~~t 600 (781)
T 3v9f_A 527 VRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQV---FQRKEGLP--NTHIRAISEDKNGNIWAST 600 (781)
T ss_dssp EEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCCEE---ECGGGTCS--CCCCCEEEECSSSCEEEEC
T ss_pred EEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcEEE---ccccCCCC--CceEEEEEECCCCCEEEEc
Confidence 4332111 245689999988888766554 6754888887654221 11112211 1357889999999877665
Q ss_pred eCCeEEEEEcCCCceeeeee-cCCC-Cc--CeeEEEECCCCCEEEEEEcCCeEEEEEcC
Q 001248 971 HETQLAIFETTKLECVKQWV-PRES-SA--PITHATFSCDSQLVYACFLDATVCVFSAA 1025 (1114)
Q Consensus 971 ~d~~i~iwd~~~~~~~~~~~-~~~h-~~--~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~ 1025 (1114)
.+.|..|+..+.+.. .+. .++- .. ...++...++|++++ |+.+|. ..++..
T Consensus 601 -~~Gl~~~~~~~~~~~-~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~Gl-~~f~p~ 655 (781)
T 3v9f_A 601 -NTGISCYITSKKCFY-TYDHSNNIPQGSFISGCVTKDHNGLIYF-GSINGL-CFFNPD 655 (781)
T ss_dssp -SSCEEEEETTTTEEE-EECGGGTCCSSCEEEEEEEECTTSCEEE-EETTEE-EEECSC
T ss_pred -CCceEEEECCCCceE-EecccCCccccccccCceEECCCCEEEE-ECCCce-EEEChh
Confidence 445788888765543 222 1111 11 235677788888665 666774 445544
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-11 Score=131.20 Aligned_cols=234 Identities=12% Similarity=0.096 Sum_probs=165.0
Q ss_pred EEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCC-CCeeEEEEcCCCCeEEEEeCCCeEEEEEccC
Q 001248 373 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG-VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHG 451 (1114)
Q Consensus 373 ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~las~~~dg~i~iwd~~~ 451 (1114)
+|++++.++.|.+||.++|+.+.+ +..+. ..+.+++++|+|++|+ +.++.|..||. +
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~ 64 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D 64 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence 699999999999999999998764 23333 4688999999999998 34678999999 7
Q ss_pred CceeeeeEeeccc-cCCeeEEEecCCCCeeEEEEecC-CCCEEEEeCCCCcceeEeec------cccCEEEEeeccCCCc
Q 001248 452 GDEVRQHLEIDAH-VGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEG------HEAPVYSVCPHHKENI 523 (1114)
Q Consensus 452 ~~~~~~~~~l~~h-~~~V~~v~~s~d~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~------h~~~v~~~~~~~~~~~ 523 (1114)
|+.+.. +..+ ...+.++.+.+||+ ++++.+. ++.|..+|. +|+.+..+.. +......++ ..++|
T Consensus 65 G~~~W~---~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~--~~~~G 136 (276)
T 3no2_A 65 GRELWN---IAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQIN--KNKKG 136 (276)
T ss_dssp SCEEEE---EECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCE--ECTTS
T ss_pred CCEEEE---EcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCce--ECCCC
Confidence 776663 4333 34688999999999 6777665 777888884 7887776642 212333333 35677
Q ss_pred eEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEEC
Q 001248 524 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM 603 (1114)
Q Consensus 524 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 603 (1114)
+++++...++.|.+||.+ ++.+..+.... ...+ +...++++.+++++.++.|..+|.
T Consensus 137 ~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~---------------------~~~~~~g~~~v~~~~~~~v~~~d~ 193 (276)
T 3no2_A 137 NYLVPLFATSEVREIAPN-GQLLNSVKLSG-TPFS---------------------SAFLDNGDCLVACGDAHCFVQLNL 193 (276)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEEECSS-CCCE---------------------EEECTTSCEEEECBTTSEEEEECT
T ss_pred CEEEEecCCCEEEEECCC-CCEEEEEECCC-Cccc---------------------eeEcCCCCEEEEeCCCCeEEEEeC
Confidence 899999999999999987 66666655432 1222 334455567888888889999999
Q ss_pred CCcceEEEeccCC----CCCCcCeEEEcCCCCEEEEEeCC--------CcEEEEEccCCccceeeccc
Q 001248 604 DSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVSTND--------NGIKILATSDGIRLLRTFEN 659 (1114)
Q Consensus 604 ~~~~~~~~~~~~~----~~~~v~~~~~s~d~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~ 659 (1114)
.+|+.+..+.... ....+..+...++|+++++.+.. +..+++.+....+.+-.+..
T Consensus 194 ~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~ 261 (276)
T 3no2_A 194 ESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLND 261 (276)
T ss_dssp TTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECC
T ss_pred cCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecC
Confidence 9999999886431 12235678888999998887421 23456666333255544443
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.9e-11 Score=134.70 Aligned_cols=206 Identities=12% Similarity=0.078 Sum_probs=142.8
Q ss_pred ccEEEEeeCCCEEEEEe---CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEe
Q 001248 821 VPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 897 (1114)
Q Consensus 821 v~~v~~s~d~~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~ 897 (1114)
...++++|||+++.++. ++.|.+.|+.+++.+.++..... ....|.+...+++.+.||++.+.+..+++....
T Consensus 179 P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~ 254 (426)
T 3c75_H 179 QWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVT 254 (426)
T ss_dssp GGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEE
T ss_pred cceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEE
Confidence 44578889999888875 47899999999988887764221 334442345666677788888888866654422
Q ss_pred ----ecccccCe-eEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCC----CCCCCceEEEEccCCcEEE
Q 001248 898 ----LKGHSKRI-TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT----PTAQSDTRVQFHQDQIHFL 968 (1114)
Q Consensus 898 ----l~~h~~~V-~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~----~~~~~i~~v~fspdg~~l~ 968 (1114)
+.....++ ..+.|++++..++..+..++|.+.|+.+................ ........++|+||++.+.
T Consensus 255 ~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rly 334 (426)
T 3c75_H 255 NTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIY 334 (426)
T ss_dssp ECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEE
T ss_pred eeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEE
Confidence 21112222 24578999988888888899999998764321111111100000 0001233479999999887
Q ss_pred EEe-----------CCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCC-EEEEEE-cCCeEEEEEcCCCeeeEEe
Q 001248 969 VVH-----------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRCRI 1033 (1114)
Q Consensus 969 ~~~-----------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~s-~Dg~I~vwd~~~~~~~~~~ 1033 (1114)
++. .+.|.++|..+.+.+..+.. .....+++|+|||+ +|+++. .++.|.|+|+.+++.+.++
T Consensus 335 Va~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v---g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 335 LLVDQRDEWKHKAASRFVVVLNAETGERINKIEL---GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE---EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEecccccccccCCCCEEEEEECCCCeEEEEEEC---CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 742 24799999999999999875 23689999999999 888888 5899999999999999887
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.42 E-value=2e-10 Score=127.87 Aligned_cols=237 Identities=11% Similarity=0.027 Sum_probs=161.8
Q ss_pred EEEEeeCCCEEEEEe-----------CCeEEEEEcCCCccccccCCC-------CCCeEEEEEecCCCcEEEEEeC--CC
Q 001248 823 CFALSKNDSYVMSAS-----------GGKISLFNMMTFKTMATFMPP-------PPAATFLAFHPQDNNIIAIGMD--DS 882 (1114)
Q Consensus 823 ~v~~s~d~~~l~~~~-----------dg~i~iwd~~~~~~~~~~~~~-------~~~i~~l~~sp~d~~~la~g~~--dg 882 (1114)
.++++|||+++.++. ++.|.+||..+.+.+.++... ......++|+| ||++|+++.. ++
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~ 148 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGP 148 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCC
Confidence 899999999998874 467999999988877665432 12345899999 8888888764 57
Q ss_pred cEEEEEcccceEEEe-ecccccCeeEEEEcCCC-CEEEEEeCCCcEEEEeCCCCcccccccc-ccCCCCCCCCCCceEEE
Q 001248 883 SIQIYNVRVDEVKSK-LKGHSKRITGLAFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFL-QIPTGRTPTAQSDTRVQ 959 (1114)
Q Consensus 883 ~v~iwd~~~~~~~~~-l~~h~~~V~~l~~s~d~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~i~~v~ 959 (1114)
.|.++| .+++.+.. +... . ++.+.|++ +.+++.+.||.+.+++. +++....... ....+..+ ......
T Consensus 149 ~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p---~~~~~~ 219 (373)
T 2mad_H 149 AVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQN---LLTQPA 219 (373)
T ss_pred eEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcc---eeecce
Confidence 899999 99988877 5432 2 24455555 45677788999999999 6544311100 00011110 112346
Q ss_pred EccCCcEE-EEEeCCeEEEEEcCCCc--eeeeeecCC--------CCcCeeEEEECCCCCEEEEEEc----------CCe
Q 001248 960 FHQDQIHF-LVVHETQLAIFETTKLE--CVKQWVPRE--------SSAPITHATFSCDSQLVYACFL----------DAT 1018 (1114)
Q Consensus 960 fspdg~~l-~~~~d~~i~iwd~~~~~--~~~~~~~~~--------h~~~v~~l~~s~dg~~l~s~s~----------Dg~ 1018 (1114)
|.+++..+ +++..+.+.+.|+.+.. .+..+.... .......++++||++.|+++.. ++.
T Consensus 220 ~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~ 299 (373)
T 2mad_H 220 QANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKE 299 (373)
T ss_pred eEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCe
Confidence 67766544 44677889999987553 222222100 0122445789999999888754 357
Q ss_pred EEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCC-eEEEEe-CCCcEEEEeccCCC
Q 001248 1019 VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGL-SDGGVHVFEPLESE 1081 (1114)
Q Consensus 1019 I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~-~l~s~~-~Dg~v~vW~i~~~~ 1081 (1114)
|.++|..+++.+.++. .+. .+..+.|+| |++ +++++. .++.|.|||..+++
T Consensus 300 V~VID~~t~~vv~~i~----~g~-------~p~~i~~s~-Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 300 VTSVTGLVGQTSSQIS----LGH-------DVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred EEEEECCCCEEEEEEE----CCC-------CcCeEEECC-CCCeEEEEEcCCCCeEEEEECCCCC
Confidence 9999999999998886 221 234799999 677 777777 58999999999988
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.5e-11 Score=151.76 Aligned_cols=248 Identities=8% Similarity=-0.025 Sum_probs=154.2
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCC----cEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCC
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg----~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1114)
|...+..++|||||++|+++.+.+| +|++||+.+|+.+.. . .+...+..++||||
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~-------------------~~~~~~~~~~wspD- 219 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-E-------------------LKWVKFSGLAWLGN- 219 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-E-------------------EEEEESCCCEESTT-
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-c-------------------CCCceeccEEEECC-
Confidence 3346889999999998555554444 599999999987542 0 01112357899999
Q ss_pred CeEEEEeCCCe--------------EEEEEccCCcee-eeeEeeccccCCeeEEEecCCCCeeEEEEec---CCCCEEEE
Q 001248 433 SLFGVAYSRHI--------------VQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCG---DDKTIKVW 494 (1114)
Q Consensus 433 ~~las~~~dg~--------------i~iwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~---~d~~i~iw 494 (1114)
+.|+.++.++. |++|++.++... ........|...+..+.|||||+.+++.+.. ....|++|
T Consensus 220 ~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~ 299 (741)
T 1yr2_A 220 DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVA 299 (741)
T ss_dssp SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEE
T ss_pred CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEE
Confidence 99998876654 889999876531 1111223344468899999999953222221 13479999
Q ss_pred eCCCC--cceeEeeccccCEEEEeeccCCCceEEEEEec----CCeEEEEEcCCCC-Cee-eecCCCCeeEEEEEecCCC
Q 001248 495 DATNG--AKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL----DGKIKAWLYDNLG-SRV-DYEAPGRWCTTMAYSADGT 566 (1114)
Q Consensus 495 d~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~----d~~i~~wd~~~~~-~~~-~~~~~~~~v~~~~~s~~g~ 566 (1114)
|+.++ ++...+..+...+....+ ++|..|+..+. ++.|.+||+.+.. ... .+..+...+..+.
T Consensus 300 d~~~~~~~~~~~l~~~~~~~~~~~~---~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~------ 370 (741)
T 1yr2_A 300 RVTNGKIGPVTALIPDLKAQWDFVD---GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVG------ 370 (741)
T ss_dssp EEETTEECCCEEEECSSSSCEEEEE---EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEE------
T ss_pred ECCCCCCcccEEecCCCCceEEEEe---ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEE------
Confidence 99877 425566555555554432 44566766665 3459999987642 212 2222222232333
Q ss_pred eEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECC-CcceEEEeccCCCCCCcCeEEEcCCCCEEEEEe----CCCc
Q 001248 567 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD-SVQLLTSIDADGGLPASPRIRFNKDGCLLAVST----NDNG 641 (1114)
Q Consensus 567 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~----~dg~ 641 (1114)
++ ++..+++...++..++|.+. ++.....+..+. ...+..++++|+++.++... ..++
T Consensus 371 ---------------~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~ 433 (741)
T 1yr2_A 371 ---------------IA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQPAT 433 (741)
T ss_dssp ---------------EE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEEEE
T ss_pred ---------------EE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCE
Confidence 33 23357777888887777554 455666665432 23577889999987665332 3478
Q ss_pred EEEEEccCCc
Q 001248 642 IKILATSDGI 651 (1114)
Q Consensus 642 i~iwd~~~~~ 651 (1114)
|.+||+.++.
T Consensus 434 i~~~d~~tg~ 443 (741)
T 1yr2_A 434 VLALDPATAK 443 (741)
T ss_dssp EEEEETTTTE
T ss_pred EEEEECCCCc
Confidence 9999998773
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-09 Score=118.44 Aligned_cols=278 Identities=9% Similarity=0.047 Sum_probs=186.7
Q ss_pred cccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeC
Q 001248 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d 829 (1114)
....+.++++.++|+..++...++.|.+|+.. . ........ .....+.+++++++
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~----------------------~~~~~~~~--~~~~~~~~i~~~~~ 72 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-G----------------------RIKEFEVP--TPDAKVMCLIVSSL 72 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S----------------------CEEEEECS--STTCCEEEEEECTT
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-C----------------------ceEEEECC--CCCCcceeEEECCC
Confidence 34578899999999977777778888887643 1 11110011 12356889999999
Q ss_pred CCEEEEEe-CCeEEEEEcCCCccc-cccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEE-eecccccCee
Q 001248 830 DSYVMSAS-GGKISLFNMMTFKTM-ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS-KLKGHSKRIT 906 (1114)
Q Consensus 830 ~~~l~~~~-dg~i~iwd~~~~~~~-~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~-~l~~h~~~V~ 906 (1114)
|++.++.. ++.|..||.. ++.. ..+......+..+++++ +++++++...++.|..||.. ++... .+......+.
T Consensus 73 g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~ 149 (300)
T 2qc5_A 73 GDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPA 149 (300)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEE
T ss_pred CCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCce
Confidence 98877766 6889999987 5442 22232346789999999 88888877778899999987 55442 2333456789
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCeEEEEEcCCCce
Q 001248 907 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC 985 (1114)
Q Consensus 907 ~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~i~iwd~~~~~~ 985 (1114)
++++.++|+++++...++.|..|+. +++... .... .. ...+..+++.++|.+.++. ..+.|.+|+. +++.
T Consensus 150 ~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~-~~---~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~ 220 (300)
T 2qc5_A 150 FITLGSDNALWFTENQNNSIGRITN-TGKLEE---YPLP-TN---AAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEI 220 (300)
T ss_dssp EEEECTTSSEEEEETTTTEEEEECT-TCCEEE---EECS-ST---TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE
T ss_pred eEEECCCCCEEEEecCCCeEEEECC-CCcEEE---eeCC-CC---CCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcE
Confidence 9999999997777777888999998 433221 1111 11 1356899999999877775 4568999998 4544
Q ss_pred eeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEE
Q 001248 986 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1065 (1114)
Q Consensus 986 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s 1065 (1114)
... ....+...+.+++++++|++.++...++.|.+||. +++.. .+. .+.+ . ..+.++++++ ++++.++
T Consensus 221 ~~~-~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~----~~~~--~--~~~~~i~~~~-~g~l~v~ 288 (300)
T 2qc5_A 221 SEY-DIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQ----LQTE--N--AEPHGITFGK-DGSVWFA 288 (300)
T ss_dssp EEE-ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEE----CCST--T--CCCCCEEECT-TSCEEEE
T ss_pred EEE-ECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEE----CCcc--C--CccceeEeCC-CCCEEEE
Confidence 332 22234567899999999986666656789999998 45443 222 1111 1 2234788887 5665554
Q ss_pred EeCCCcEEEEecc
Q 001248 1066 GLSDGGVHVFEPL 1078 (1114)
Q Consensus 1066 ~~~Dg~v~vW~i~ 1078 (1114)
.. . .|..++..
T Consensus 289 ~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 289 LK-C-KIGKLNLN 299 (300)
T ss_dssp CS-S-EEEEEEEC
T ss_pred cc-C-ceEEeCCC
Confidence 43 4 67766653
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.35 E-value=3.2e-10 Score=124.15 Aligned_cols=257 Identities=13% Similarity=0.093 Sum_probs=161.1
Q ss_pred ccCCCCceEEEEcCCCCeEEEE-------EecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEE
Q 001248 355 LNQGSSPMSMDFHPVQQTLLLV-------GTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 427 (1114)
Q Consensus 355 ~~h~~~v~~v~~spdg~~ll~t-------g~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 427 (1114)
...-....+++|+++|+ ++++ +..++.|.+||..+++..... . . ...++...+.+++
T Consensus 14 ~~~~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~-~------------~--~~~~~~~~~~~i~ 77 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVIC-K------------P--EVNGYGGIPAGCQ 77 (314)
T ss_dssp ECCCTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEE-C------------C--EETTEECCEEEEE
T ss_pred hccCCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEEE-e------------c--ccCCCCCCCceEE
Confidence 33455678999999998 5766 567899999998887654210 0 0 0122445799999
Q ss_pred EcCC-CCeEEEEeCCCeEEEEEccCCceeee-eEeecc-ccCCeeEEEecCCCCeeEEEEecCC---------------C
Q 001248 428 WSPD-GSLFGVAYSRHIVQIYSYHGGDEVRQ-HLEIDA-HVGGVNDIAFSHPNKQLCVITCGDD---------------K 489 (1114)
Q Consensus 428 ~spd-g~~las~~~dg~i~iwd~~~~~~~~~-~~~l~~-h~~~V~~v~~s~d~~~~~l~s~~~d---------------~ 489 (1114)
++++ |+++++.. .+.|.+||.. ++.... .....+ ....+.+++++++|+ ++++...+ +
T Consensus 78 ~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~ 153 (314)
T 1pjx_A 78 CDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFG 153 (314)
T ss_dssp ECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCE
T ss_pred EecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCC
Confidence 9999 76555544 4469999988 653321 100111 224589999999998 55555544 5
Q ss_pred CEEEEeCCCCcceeEeeccccCEEEEeec--cCCCceEEEE-EecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCC
Q 001248 490 TIKVWDATNGAKQYIFEGHEAPVYSVCPH--HKENIQFIFS-TALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT 566 (1114)
Q Consensus 490 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~~~~~l~s-~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~ 566 (1114)
.|..||.. ++... +..+......++++ .+++++.++. ...++.|.+||+......... ..+.-.+.
T Consensus 154 ~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~-------~~~~~~~~-- 222 (314)
T 1pjx_A 154 SIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK-------KVWGHIPG-- 222 (314)
T ss_dssp EEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE-------EEEEECCC--
T ss_pred eEEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccc-------eEEEECCC--
Confidence 67777765 55433 33344456777765 1255555544 456889999987621111000 00000000
Q ss_pred eEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEE-EeCCCcEEEE
Q 001248 567 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV-STNDNGIKIL 645 (1114)
Q Consensus 567 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~~dg~i~iw 645 (1114)
+.......++++++|+.+++...++.|.+||..+++.+..+..+. ..+.+++|+++|+.|++ ...++.|..|
T Consensus 223 -----~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~i~~~~dg~~l~v~~~~~~~l~~~ 295 (314)
T 1pjx_A 223 -----THEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPF--EKPSNLHFKPQTKTIFVTEHENNAVWKF 295 (314)
T ss_dssp -----CSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSS--SCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred -----CCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCC--CCceeEEECCCCCEEEEEeCCCCeEEEE
Confidence 000123446677777777777788999999998787777665442 35789999999995554 4556789999
Q ss_pred EccC
Q 001248 646 ATSD 649 (1114)
Q Consensus 646 d~~~ 649 (1114)
++..
T Consensus 296 ~~~~ 299 (314)
T 1pjx_A 296 EWQR 299 (314)
T ss_dssp ECSS
T ss_pred eCCC
Confidence 8764
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.8e-09 Score=114.48 Aligned_cols=238 Identities=11% Similarity=0.016 Sum_probs=160.7
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
....+.++++.++|+ +.++...++.|.+||.. ++.... .+..+...+.+++++++|++.+
T Consensus 18 ~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~~------------------~~~~~~~~~~~i~~~~~g~l~v 77 (300)
T 2qc5_A 18 PDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKEF------------------EVPTPDAKVMCLIVSSLGDIWF 77 (300)
T ss_dssp TTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEE------------------ECSSTTCCEEEEEECTTSCEEE
T ss_pred CCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEEE------------------ECCCCCCcceeEEECCCCCEEE
Confidence 456889999999999 57766678999999988 544321 1222345789999999999888
Q ss_pred EEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCccee-EeeccccCEEEE
Q 001248 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY-IFEGHEAPVYSV 515 (1114)
Q Consensus 437 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~h~~~v~~~ 515 (1114)
+...++.|..||.. ++... ..+......+.++++.++|. ++++...++.|..||.. ++... .+......+..+
T Consensus 78 ~~~~~~~v~~~d~~-g~~~~--~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i 151 (300)
T 2qc5_A 78 TENGANKIGKLSKK-GGFTE--YPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFI 151 (300)
T ss_dssp EETTTTEEEEECTT-SCEEE--EECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEE
T ss_pred EecCCCeEEEECCC-CCeEE--ecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeE
Confidence 77667889999988 54321 12333446789999999998 67777767889999977 65442 233344567888
Q ss_pred eeccCCCceEEEEEecCCeEEEEEcCCCCCeeeec--CCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEe
Q 001248 516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE--APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 593 (1114)
Q Consensus 516 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 593 (1114)
++. +++.+.++...++.|..||. +.... .+. .... ....++++++++.+++..
T Consensus 152 ~~d--~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~---------------------~~~~i~~d~~g~l~v~~~ 206 (300)
T 2qc5_A 152 TLG--SDNALWFTENQNNSIGRITN-TGKLE-EYPLPTNAA---------------------APVGITSGNDGALWFVEI 206 (300)
T ss_dssp EEC--TTSSEEEEETTTTEEEEECT-TCCEE-EEECSSTTC---------------------CEEEEEECTTSSEEEEET
T ss_pred EEC--CCCCEEEEecCCCeEEEECC-CCcEE-EeeCCCCCC---------------------CcceEEECCCCCEEEEcc
Confidence 864 45566666666788999987 32221 111 1112 234455555555566555
Q ss_pred CCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEc
Q 001248 594 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT 647 (1114)
Q Consensus 594 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~ 647 (1114)
..+.|.+|+. +++.... ........+.+++++++|+++++...++.|..|+.
T Consensus 207 ~~~~i~~~~~-~g~~~~~-~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 207 MGNKIGRITT-TGEISEY-DIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp TTTEEEEECT-TCCEEEE-ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred CCCEEEEEcC-CCcEEEE-ECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 6778999998 5554432 22222345778999999997777666788988876
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.33 E-value=5.3e-11 Score=146.89 Aligned_cols=242 Identities=11% Similarity=0.060 Sum_probs=157.2
Q ss_pred ccceEEEEEccCcceeeecccC-----ceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEE
Q 001248 751 ATKISRLIFTNSGNAILALASN-----AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA 825 (1114)
Q Consensus 751 ~~~i~~l~~s~~~~~l~~~~~d-----g~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~ 825 (1114)
...+..+.|||||++|+.+..+ ..|++||+. +|..+.... +...+..++
T Consensus 162 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~----------------------tg~~~~~~~----~~~~~~~~~ 215 (741)
T 1yr2_A 162 ATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVA----------------------DGKPLADEL----KWVKFSGLA 215 (741)
T ss_dssp -EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETT----------------------TCCEEEEEE----EEEESCCCE
T ss_pred CEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECC----------------------CCCCCCccC----CCceeccEE
Confidence 3468899999999998876654 357777654 343322111 111235789
Q ss_pred EeeCCCEEEEEe-CC--------------eEEEEEcCCCcc----ccccCCCCCCeEEEEEecCCCcEEEEEeCCC----
Q 001248 826 LSKNDSYVMSAS-GG--------------KISLFNMMTFKT----MATFMPPPPAATFLAFHPQDNNIIAIGMDDS---- 882 (1114)
Q Consensus 826 ~s~d~~~l~~~~-dg--------------~i~iwd~~~~~~----~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg---- 882 (1114)
|+|| +.|+.+. ++ .|++|++.++.. +.....+...+..+.||| ||++|+..+.++
T Consensus 216 wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~ 293 (741)
T 1yr2_A 216 WLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPV 293 (741)
T ss_dssp ESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSC
T ss_pred EECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCc
Confidence 9999 9888876 43 389999977653 222233334588999999 898888777544
Q ss_pred -cEEEEEcccc--eEEEeecccccCeeEEEEcCCCCEEEEEeCC----CcEEEEeCCCCccccccccccCCCCCCCCCCc
Q 001248 883 -SIQIYNVRVD--EVKSKLKGHSKRITGLAFSHALNVLVSSGAD----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD 955 (1114)
Q Consensus 883 -~v~iwd~~~~--~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 955 (1114)
.|++||+.++ +....+..+...+.... +|+|+.|+..+.+ +.|.+|+++++. ... ......+. ..+
T Consensus 294 ~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~--~~l~~~~~---~~l 366 (741)
T 1yr2_A 294 NTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGST-PRF--DTVVPESK---DNL 366 (741)
T ss_dssp CEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSS-CEE--EEEECCCS---SEE
T ss_pred ceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCc-ccc--EEEecCCC---CeE
Confidence 8999999887 31455666666565554 4899998887764 449999998743 111 11122221 235
Q ss_pred eEEEEccCCcEEEE-EeCCeEEEEEcC-CCceeeeeecCCCCcCeeEEEECCCCCEEEEEE----cCCeEEEEEcCCCee
Q 001248 956 TRVQFHQDQIHFLV-VHETQLAIFETT-KLECVKQWVPRESSAPITHATFSCDSQLVYACF----LDATVCVFSAANLKL 1029 (1114)
Q Consensus 956 ~~v~fspdg~~l~~-~~d~~i~iwd~~-~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s----~Dg~I~vwd~~~~~~ 1029 (1114)
..+.++ ++.++++ ..|+..++|... +++....+.. .+...+..++++||++.|+... ..++|++||+.+++.
T Consensus 367 ~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~-~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 367 ESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSL-PGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp EEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBC-SSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred EEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccC-CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 567776 4555555 577776666543 4555555442 2356788999999998766332 347899999999874
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.31 E-value=2.4e-10 Score=125.11 Aligned_cols=245 Identities=8% Similarity=0.021 Sum_probs=163.2
Q ss_pred cceEEEEEccCcceeee-------cccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCC-CCCCCCCccE
Q 001248 752 TKISRLIFTNSGNAILA-------LASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT-DSNPEEAVPC 823 (1114)
Q Consensus 752 ~~i~~l~~s~~~~~l~~-------~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~-~~~~~~~v~~ 823 (1114)
....+++|++++..+++ ...++.|.+|+.... ........ ..++...+.+
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g----------------------~~~~~~~~~~~~~~~~~~~ 75 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTG----------------------KKTVICKPEVNGYGGIPAG 75 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTC----------------------CEEEEECCEETTEECCEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCC----------------------cEEEEEecccCCCCCCCce
Confidence 35578999999987777 567788888875422 21110000 0013356889
Q ss_pred EEEeeC-CCEEEEEeCCeEEEEEcCCCccccc-cCC----CCCCeEEEEEecCCCcEEEEEeCC---------------C
Q 001248 824 FALSKN-DSYVMSASGGKISLFNMMTFKTMAT-FMP----PPPAATFLAFHPQDNNIIAIGMDD---------------S 882 (1114)
Q Consensus 824 v~~s~d-~~~l~~~~dg~i~iwd~~~~~~~~~-~~~----~~~~i~~l~~sp~d~~~la~g~~d---------------g 882 (1114)
++++++ |+++++...+.|.+||.. ++.... ... ....+.++++++ +++++++...+ +
T Consensus 76 i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~ 153 (314)
T 1pjx_A 76 CQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFG 153 (314)
T ss_dssp EEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCE
T ss_pred EEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCC
Confidence 999999 776666656689999988 654332 221 123588999999 88887776655 5
Q ss_pred cEEEEEcccceEEEeecccccCeeEEEEc----CCCCEEEE-EeCCCcEEEEeCC-CCccccccccccCCCCCCCCCCce
Q 001248 883 SIQIYNVRVDEVKSKLKGHSKRITGLAFS----HALNVLVS-SGADSQLCVWSSD-GWEKQKNRFLQIPTGRTPTAQSDT 956 (1114)
Q Consensus 883 ~v~iwd~~~~~~~~~l~~h~~~V~~l~~s----~d~~~l~s-~s~D~~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~i~ 956 (1114)
.|..||.. ++... +..+......++|+ ++++.|.. ...++.|.+|+++ .++...........++. ...+.
T Consensus 154 ~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~--~~~p~ 229 (314)
T 1pjx_A 154 SIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH--EGGAD 229 (314)
T ss_dssp EEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS--SCEEE
T ss_pred eEEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCC--CCCCC
Confidence 67777765 55433 33344557899999 99976554 4567899999986 33221111222222211 02467
Q ss_pred EEEEccCCcEEEEE-eCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEE-cCCeEEEEEcCC
Q 001248 957 RVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAAN 1026 (1114)
Q Consensus 957 ~v~fspdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s-~Dg~I~vwd~~~ 1026 (1114)
.++++++|+++++. .++.|.+||..+++.+..+. .+...+.+++|++||++|++++ .++.|..|++..
T Consensus 230 ~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~--~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 230 GMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR--CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE--CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred ceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe--CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 89999999988874 67899999998787766665 3457899999999999665554 567899999864
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.29 E-value=6.4e-10 Score=120.89 Aligned_cols=239 Identities=12% Similarity=0.061 Sum_probs=155.2
Q ss_pred EeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCC
Q 001248 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1114)
+...+......+.|+|+|++|++++..++.|..|+. +++... +..+...+..++++++|
T Consensus 39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~--------------------~~~~~~~~~gl~~d~dG 97 (305)
T 3dr2_A 39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDV--------------------LLDATAFTNGNAVDAQQ 97 (305)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEE--------------------EEESCSCEEEEEECTTS
T ss_pred EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEE--------------------EeCCCCccceeeECCCC
Confidence 444466778899999999988899988999999998 444221 22345578999999999
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeeeEeeccc-cCCeeEEEecCCCCeeEEEE----ecC-------------CCCEEEE
Q 001248 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAH-VGGVNDIAFSHPNKQLCVIT----CGD-------------DKTIKVW 494 (1114)
Q Consensus 433 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h-~~~V~~v~~s~d~~~~~l~s----~~~-------------d~~i~iw 494 (1114)
+++++...++.|.+|+.. ++.........+. ...+.++++.++|+ +.+| |.. .+.|..|
T Consensus 98 ~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~ 174 (305)
T 3dr2_A 98 RLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHHSVYRL 174 (305)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCEEEEEE
T ss_pred CEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCCeEEEE
Confidence 977766666789999986 4422111111111 23578899999998 6665 332 2568888
Q ss_pred eCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecC------CeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeE
Q 001248 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD------GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRT 568 (1114)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~ 568 (1114)
|..+++..... .......++|++ +++.|+.+... +.|.+|++.... .... ..
T Consensus 175 d~~~g~~~~~~--~~~~p~gl~~sp--dg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~-----------------~~ 232 (305)
T 3dr2_A 175 PPDGSPLQRMA--DLDHPNGLAFSP--DEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDR-----------------RH 232 (305)
T ss_dssp CSSSCCCEEEE--EESSEEEEEECT--TSSEEEEEECCC---CCCEEEEEEEETTE-EEEE-----------------EE
T ss_pred cCCCCcEEEEe--cCCCCcceEEcC--CCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCC-----------------eE
Confidence 87777654433 445667788754 55667666554 789999886532 1100 00
Q ss_pred EeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEE
Q 001248 569 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIK 643 (1114)
Q Consensus 569 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~ 643 (1114)
+..........++++++|+ +.++..+ .|.+|+. .++.+..+..+. .+.+++|+++++.|++++.++..+
T Consensus 233 ~~~~~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~-~g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 233 FASVPDGLPDGFCVDRGGW-LWSSSGT-GVCVFDS-DGQLLGHIPTPG---TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp EECCSSSCCCSEEECTTSC-EEECCSS-EEEEECT-TSCEEEEEECSS---CCCEEEECTTSCEEEEEETTEEEE
T ss_pred EEECCCCCCCeEEECCCCC-EEEecCC-cEEEECC-CCCEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 0000011222356677777 4444444 5999998 577777776543 378999999999888888764333
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.28 E-value=5.2e-10 Score=124.57 Aligned_cols=257 Identities=12% Similarity=0.108 Sum_probs=164.4
Q ss_pred CCCCeEEEEEecC----CcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEe----
Q 001248 368 PVQQTLLLVGTNV----GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY---- 439 (1114)
Q Consensus 368 pdg~~ll~tg~~d----g~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~---- 439 (1114)
|++++++++...+ +.|.++|..+++.+..... + ..+ .+++||||++|.++.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~v------------------G-~~P--gia~SpDgk~lyVan~~~~ 140 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDG------------------G-FLP--HPVAAEDGSFFAQASTVFE 140 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE------------------C-SSC--EEEECTTSSCEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEEC------------------C-CCC--ceEECCCCCEEEEEecccc
Confidence 5677666665544 7999999999988864221 1 124 799999999998876
Q ss_pred ------CCCeEEEEEccCCceeeeeEeec--c---ccCCeeEEEecCCCCeeEEEEec--CCCCEEEEeCCCCcceeEee
Q 001248 440 ------SRHIVQIYSYHGGDEVRQHLEID--A---HVGGVNDIAFSHPNKQLCVITCG--DDKTIKVWDATNGAKQYIFE 506 (1114)
Q Consensus 440 ------~dg~i~iwd~~~~~~~~~~~~l~--~---h~~~V~~v~~s~d~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~ 506 (1114)
.++.|.++|..+++.+..+. +. . .......++|+|||++ ++.+. .+++|.+.|+.+++.+.++.
T Consensus 141 ~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk~--lyV~n~~~~~~VsVID~~t~kvv~~I~ 217 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNKN--LLFYQFSPAPAVGVVDLEGKTFDRMLD 217 (426)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSSE--EEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred ccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEecCCCCeEEEEECCCCeEEEEEE
Confidence 36789999999988766432 22 0 1124567999999995 44433 36889999999999988876
Q ss_pred ccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeee----ecCCCCee-EEEEEecCCCeEEeee---------
Q 001248 507 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD----YEAPGRWC-TTMAYSADGTRTYQGF--------- 572 (1114)
Q Consensus 507 ~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~----~~~~~~~v-~~~~~s~~g~~~~~~~--------- 572 (1114)
.-.. ....+... ..+++.+.||.+.+.+..+.+.... +.....++ ..+.+.+++..++...
T Consensus 218 v~g~----~~~~p~g~-~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD 292 (426)
T 3c75_H 218 VPDC----YHIFPASP-TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQAD 292 (426)
T ss_dssp CCSE----EEEEEEET-TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEE
T ss_pred cCCc----eeeccCCC-cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEe
Confidence 4211 11112222 3555666677777777633322211 11100000 1112233332211100
Q ss_pred ------------------------cccceeEEEecCCCCEEEEEeC----------CCeEEEEECCCcceEEEeccCCCC
Q 001248 573 ------------------------RKRSLGVVQFDTTKNRFLAAGD----------DFSIKFWDMDSVQLLTSIDADGGL 618 (1114)
Q Consensus 573 ------------------------~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~ 618 (1114)
.......+.++++++++++... .+.|.++|..+.+.+..+....
T Consensus 293 ~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-- 370 (426)
T 3c75_H 293 LTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-- 370 (426)
T ss_dssp ECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--
T ss_pred ccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC--
Confidence 0011112678888887777642 3579999999999999987543
Q ss_pred CCcCeEEEcCCCC-EEEEEe-CCCcEEEEEccCCccceeec
Q 001248 619 PASPRIRFNKDGC-LLAVST-NDNGIKILATSDGIRLLRTF 657 (1114)
Q Consensus 619 ~~v~~~~~s~d~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~ 657 (1114)
....++|+|||+ ++++.. .++.|.++|..++ +.++.+
T Consensus 371 -~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~-kvv~tI 409 (426)
T 3c75_H 371 -EIDSINVSQDAEPLLYALSAGTQTLHIYDAATG-EELRSV 409 (426)
T ss_dssp -EECEEEECCSSSCEEEEEETTTTEEEEEETTTC-CEEEEE
T ss_pred -CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC-CEEEEe
Confidence 368899999999 888887 5899999999998 445543
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.28 E-value=3.1e-10 Score=124.46 Aligned_cols=174 Identities=12% Similarity=0.127 Sum_probs=134.9
Q ss_pred CCccEEEEeeCCCEEEEEeCCeEEEEEcCCCc---------c-ccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 001248 819 EAVPCFALSKNDSYVMSASGGKISLFNMMTFK---------T-MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 888 (1114)
Q Consensus 819 ~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~---------~-~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd 888 (1114)
..+..+++++...++++|+...+.+|++++.. . ......+.. |+.++| |+.+|+++ .++.|++||
T Consensus 38 ~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f---d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF---HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE---ETTEEEEE-ESSEEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE---CCCEEEEE-cCCcEEEEE
Confidence 36889999999999999997788889976543 1 111223455 999999 57888888 889999999
Q ss_pred cccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEE
Q 001248 889 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 968 (1114)
Q Consensus 889 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~ 968 (1114)
+.+.........|...|.++.+.+. .+++++.||+|.+||+..+.... . ...|++++|||+| ..+
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-----~-------~~~Vs~v~WSpkG-~~v 177 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-----L-------AQNVTSFDVTNSQ-LAV 177 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-----E-------EESEEEEEECSSE-EEE
T ss_pred chhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-----c-------cCCceEEEEcCCc-eEE
Confidence 9876655666778888998888755 38899999999999999755321 1 1368999999999 444
Q ss_pred EEeCCeEEEEEcCCCce--eeeeec----C---CCCcCeeEEEECCCCCEEEE
Q 001248 969 VVHETQLAIFETTKLEC--VKQWVP----R---ESSAPITHATFSCDSQLVYA 1012 (1114)
Q Consensus 969 ~~~d~~i~iwd~~~~~~--~~~~~~----~---~h~~~v~~l~~s~dg~~l~s 1012 (1114)
...||.+++|+...+++ .+.+.. . +|...|.+|+|.+++.++++
T Consensus 178 g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 178 LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 47999999999888775 444421 1 46789999999999999886
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.28 E-value=7.4e-10 Score=125.15 Aligned_cols=250 Identities=8% Similarity=-0.007 Sum_probs=163.0
Q ss_pred CCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEEcccceEE
Q 001248 819 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVK 895 (1114)
Q Consensus 819 ~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg--~v~iwd~~~~~~~ 895 (1114)
.....++++++++++++.. ++.|++||..++......... .... ++|++ +++.|+++..++ .|++|+..++...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCcee
Confidence 4577899999999777666 689999999877665444432 2333 99999 888888887766 7999998765443
Q ss_pred Eee----cccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCce-EEEEccC-CcEEEE
Q 001248 896 SKL----KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDT-RVQFHQD-QIHFLV 969 (1114)
Q Consensus 896 ~~l----~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~-~v~fspd-g~~l~~ 969 (1114)
..+ ..+...+.+++++|++..|+.+..++.|+.||..++......... ..+... .... .++|+|+ +.++++
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~-~~g~~~--~~P~~~ia~~p~~g~lyv~ 284 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLE-LSGSLG--TNPGPYLIYYFVDSNFYMS 284 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECC-CCSCCC--CSSCCEEEEETTTTEEEEE
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccc-ccCCCC--CCccccEEEeCCCCEEEEE
Confidence 333 224567889999995555666777889999999875421110000 111110 1113 9999996 544444
Q ss_pred -EeCCeEEEEEcCCCceeeeeecCC-------------CCcCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCCeeeEEeC
Q 001248 970 -VHETQLAIFETTKLECVKQWVPRE-------------SSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 970 -~~d~~i~iwd~~~~~~~~~~~~~~-------------h~~~v~~l~~s~dg~~l~s~s-~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
..++.|+.|+.... +..+.... .-.....++++++|.++++-+ .+++|+.|++.+++......
T Consensus 285 d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g 362 (409)
T 3hrp_A 285 DQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAG 362 (409)
T ss_dssp ETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEE
T ss_pred eCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeC
Confidence 35778999987643 22222110 023588999999999777776 78999999988887654332
Q ss_pred CCc--ccCCC--CCCCCccceEEEecCCCCCeEEEEeCCCcEEEEec
Q 001248 1035 PSA--YLPAG--VSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1077 (1114)
Q Consensus 1035 ~~~--~~~~~--~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i 1077 (1114)
... -...+ ....--.|..+++++ +++++++-..++.|+.+++
T Consensus 363 ~~~~~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 363 QVDVASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CTTCBSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEEEE
T ss_pred CCCCCCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEEEe
Confidence 100 00000 001113467899999 4778888878888888775
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.26 E-value=2.3e-09 Score=115.95 Aligned_cols=235 Identities=11% Similarity=0.086 Sum_probs=151.6
Q ss_pred CCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEE
Q 001248 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 438 (1114)
Q Consensus 359 ~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 438 (1114)
.-..+..|+|++..|+++...++.|..||..+++... + .+...+.+++++++|+++++.
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~-~~~~~~~~i~~~~dG~l~v~~ 71 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR--------------------V-TMDAPVSSVALRQSGGYVATI 71 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE--------------------E-ECSSCEEEEEEBTTSSEEEEE
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE--------------------E-eCCCceEEEEECCCCCEEEEE
Confidence 3456899999877788888889999999999876532 1 123579999999999965553
Q ss_pred eCCCeEEEEEccCCceeeeeEeecc--ccCCeeEEEecCCCCeeEEEEe-cC--------CCCEEEEeCCCCcceeEeec
Q 001248 439 YSRHIVQIYSYHGGDEVRQHLEIDA--HVGGVNDIAFSHPNKQLCVITC-GD--------DKTIKVWDATNGAKQYIFEG 507 (1114)
Q Consensus 439 ~~dg~i~iwd~~~~~~~~~~~~l~~--h~~~V~~v~~s~d~~~~~l~s~-~~--------d~~i~iwd~~~~~~~~~~~~ 507 (1114)
++.|.+||..+++.. ....... ....+++++++|+|+ ++++. .. ...-.+|.+.....+..+..
T Consensus 72 --~~~l~~~d~~~g~~~-~~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 146 (297)
T 3g4e_A 72 --GTKFCALNWKEQSAV-VLATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFD 146 (297)
T ss_dssp --TTEEEEEETTTTEEE-EEEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEE
T ss_pred --CCeEEEEECCCCcEE-EEEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEEEEee
Confidence 567999999887643 2212211 123578999999998 44443 21 13345555543223333333
Q ss_pred cccCEEEEeeccCCCceEE-EEEecCCeEEEEEcCC-CCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCC
Q 001248 508 HEAPVYSVCPHHKENIQFI-FSTALDGKIKAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 585 (1114)
Q Consensus 508 h~~~v~~~~~~~~~~~~~l-~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~ 585 (1114)
+....+.++|++ +++.+ ++.+.++.|..|+++. ....... .+.... .........++++++
T Consensus 147 ~~~~pngi~~sp--dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~--------~~~~~~-------~~~~~~p~g~~~d~~ 209 (297)
T 3g4e_A 147 QVDISNGLDWSL--DHKIFYYIDSLSYSVDAFDYDLQTGQISNR--------RSVYKL-------EKEEQIPDGMCIDAE 209 (297)
T ss_dssp EESBEEEEEECT--TSCEEEEEEGGGTEEEEEEECTTTCCEEEE--------EEEEEC-------CGGGCEEEEEEEBTT
T ss_pred ccccccceEEcC--CCCEEEEecCCCCcEEEEeccCCCCcccCc--------EEEEEC-------CCCCCCCCeeEECCC
Confidence 445567888765 44544 5566688999998742 1111100 000000 001123345667777
Q ss_pred CCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEc-CCCCEEEEEeC
Q 001248 586 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTN 638 (1114)
Q Consensus 586 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~~~~~ 638 (1114)
|++.++....+.|.+||..+++.+..+..+. ..+++++|. |+++.|++++.
T Consensus 210 G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~--~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 210 GKLWVACYNGGRVIRLDPVTGKRLQTVKLPV--DKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp SCEEEEEETTTEEEEECTTTCCEEEEEECSS--SBEEEEEEESGGGCEEEEEEB
T ss_pred CCEEEEEcCCCEEEEEcCCCceEEEEEECCC--CCceEEEEeCCCCCEEEEEcC
Confidence 7777777788899999999999988887653 358899998 88887776665
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.26 E-value=2e-09 Score=121.65 Aligned_cols=255 Identities=11% Similarity=0.036 Sum_probs=163.4
Q ss_pred CCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEE
Q 001248 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 438 (1114)
Q Consensus 359 ~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 438 (1114)
...+.|+|+++|+ |+++...++.|++||..++..... ... ..... ++|+|++++|+++
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~-------------------~~~-~~~~~-ia~~~~g~~l~~~ 188 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTV-------------------HPG-FKGGK-PAVTKDKQRVYSI 188 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEE-------------------EET-CCBCB-CEECTTSSEEEEE
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEe-------------------ecc-CCCCc-eeEecCCCcEEEE
Confidence 4688999999998 688877789999999998765431 111 22233 9999999999988
Q ss_pred eCCC--eEEEEEccCCceeeeeEeecc-ccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeE----eeccccC
Q 001248 439 YSRH--IVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI----FEGHEAP 511 (1114)
Q Consensus 439 ~~dg--~i~iwd~~~~~~~~~~~~l~~-h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~----~~~h~~~ 511 (1114)
..++ .|.+|+..++........+.. +...+.+++++|++.. |+.+..++.|+.||..++..... ..++...
T Consensus 189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~--lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~ 266 (409)
T 3hrp_A 189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW--LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGT 266 (409)
T ss_dssp BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE--EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe--EEEEECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence 8765 788999887654332212222 4567889999996553 33356688999999887763322 2222222
Q ss_pred E--EEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEE
Q 001248 512 V--YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 589 (1114)
Q Consensus 512 v--~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l 589 (1114)
- ..++|++. ++.++++...++.|+.|+.+.. ...+...... .. ..+| ......-.....++++++++++
T Consensus 267 ~P~~~ia~~p~-~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~-~g---~~dg--~~~~~~~~~P~gia~d~dG~ly 337 (409)
T 3hrp_A 267 NPGPYLIYYFV-DSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQ-KT---VQDG--LREEALFAQPNGMTVDEDGNFY 337 (409)
T ss_dssp SSCCEEEEETT-TTEEEEEETTTTEEEEECTTCC--EEEEEECTTC-CS---CBCE--EGGGCBCSSEEEEEECTTCCEE
T ss_pred CccccEEEeCC-CCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCC-CC---cCCC--cccccEeCCCeEEEEeCCCCEE
Confidence 2 27887653 3467777777889999987642 2211111100 00 0000 0000001234567888888877
Q ss_pred EEEe-CCCeEEEEECCCcceEEEeccCC-------------CCCCcCeEEEcCCCCEEEEEeCCCcEEEEEc
Q 001248 590 LAAG-DDFSIKFWDMDSVQLLTSIDADG-------------GLPASPRIRFNKDGCLLAVSTNDNGIKILAT 647 (1114)
Q Consensus 590 ~~~~-~dg~i~iwd~~~~~~~~~~~~~~-------------~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~ 647 (1114)
++-. .++.|+.|+..++...... +.. .......++++++|.++++-..++.|+.+++
T Consensus 338 vad~~~~~~I~~~~~~~G~v~~~~-g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 338 IVDGFKGYCLRKLDILDGYVSTVA-GQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEETTTTCEEEEEETTTTEEEEEE-ECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEeCCCCCEEEEEECCCCEEEEEe-CCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 7777 8899999998777644333 220 1234568999999888888888888887765
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.5e-10 Score=125.08 Aligned_cols=199 Identities=9% Similarity=-0.019 Sum_probs=127.8
Q ss_pred ccEEEEeeCCCEEEEEe---CCeEEE--EEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc----
Q 001248 821 VPCFALSKNDSYVMSAS---GGKISL--FNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---- 891 (1114)
Q Consensus 821 v~~v~~s~d~~~l~~~~---dg~i~i--wd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~---- 891 (1114)
...++++|||++++++. ++.+.+ +|+.+ +.++..... ..+.|++...+++.+.||.+.+.|+.+
T Consensus 126 P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~----~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~ 198 (368)
T 1mda_H 126 VHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC----FHIHPGAAATHYLGSCPASLAASDLAAAPAA 198 (368)
T ss_dssp TTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC----CCCEEEETTEEECCCCTTSCEEEECCSSCCC
T ss_pred cceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc----eEEccCCCeEEEEEcCCCCEEEEECcccccc
Confidence 34578888888888775 356888 88877 333332111 223453445666677889988889887
Q ss_pred -ceEEEe----ecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCC----CCCCCCCceEEEEcc
Q 001248 892 -DEVKSK----LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG----RTPTAQSDTRVQFHQ 962 (1114)
Q Consensus 892 -~~~~~~----l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~----~~~~~~~i~~v~fsp 962 (1114)
++.... +.-...+. + ++++..++..+. +.|.+.|+.+........+..... ..........++|+|
T Consensus 199 ~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~ 273 (368)
T 1mda_H 199 AGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK 273 (368)
T ss_dssp CEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET
T ss_pred CCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcC
Confidence 543321 11112232 3 666677666666 899999987533211111111000 000001223378999
Q ss_pred CCcEEEEE-e-C--------CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEE-EEEE-cCCeEEEEEcCCCeee
Q 001248 963 DQIHFLVV-H-E--------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLV-YACF-LDATVCVFSAANLKLR 1030 (1114)
Q Consensus 963 dg~~l~~~-~-d--------~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~s~s-~Dg~I~vwd~~~~~~~ 1030 (1114)
||+.+.++ . . +.+.++|+.+++.+..+... .....++|+|||+++ ++.. .++.|.|+|+.+++.+
T Consensus 274 dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg---~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv 350 (368)
T 1mda_H 274 NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG---HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ 350 (368)
T ss_dssp TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred CCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC---CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEE
Confidence 99988874 3 2 36779999999999888753 368999999999864 5555 4899999999999999
Q ss_pred EEeC
Q 001248 1031 CRIN 1034 (1114)
Q Consensus 1031 ~~~~ 1034 (1114)
.++.
T Consensus 351 ~~I~ 354 (368)
T 1mda_H 351 SSVE 354 (368)
T ss_dssp EECC
T ss_pred EEEE
Confidence 9887
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.4e-10 Score=128.49 Aligned_cols=273 Identities=8% Similarity=-0.013 Sum_probs=175.4
Q ss_pred cceEEEEEccCcceeeecc--cCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeC
Q 001248 752 TKISRLIFTNSGNAILALA--SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1114)
Q Consensus 752 ~~i~~l~~s~~~~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d 829 (1114)
.....++++++|+.+++.. .++.++||.+.. +... -|.... .....+-..+..++++++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~------g~~~------~~p~~~-------~~~~~~~~~p~gv~~d~~ 77 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ------DGLI------PFPPQS-------GNAIITFDTVLGIKSDGN 77 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET------TEEE------ESCCCC-------SSCCCCCSCEEEEEECSS
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECC------CCee------cCCCcc-------cCcccceeEeeEEEEcCC
Confidence 4678999999999887753 234366666541 1110 010000 001125567899999999
Q ss_pred CCEEEEEe------CCeEEEEEcCCCccccccCC------CCCCeEEEEEecCCCcEEEEEe---CCCcEEEEEcccceE
Q 001248 830 DSYVMSAS------GGKISLFNMMTFKTMATFMP------PPPAATFLAFHPQDNNIIAIGM---DDSSIQIYNVRVDEV 894 (1114)
Q Consensus 830 ~~~l~~~~------dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~sp~d~~~la~g~---~dg~v~iwd~~~~~~ 894 (1114)
++++++-. ++.|.+||+.+++.+..+.. +...+..++++++++.++++.. .++.|.+||+.+++.
T Consensus 78 g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~ 157 (343)
T 2qe8_A 78 GIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA 157 (343)
T ss_dssp SEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE
T ss_pred CcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE
Confidence 98766543 37899999998886655432 2235689999984455556555 678999999999988
Q ss_pred EEeecccccCee-EEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eC
Q 001248 895 KSKLKGHSKRIT-GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE 972 (1114)
Q Consensus 895 ~~~l~~h~~~V~-~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d 972 (1114)
...+.+|..... ...++++|..+.+.+.|++++.|.. .+..++|+|||+.|+++ ..
T Consensus 158 ~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~----------------------~~~gia~s~dg~~ly~~~~~ 215 (343)
T 2qe8_A 158 ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL----------------------GVNGIVLDAENEWLYLSPMH 215 (343)
T ss_dssp EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC----------------------CEEEEEECTTSCEEEEEESS
T ss_pred EEEecCCCcccccccceeECCEEEEeccCCCceeceec----------------------ccceeEeccCCCEEEEEeCC
Confidence 777776543211 1455667888888888888876632 24789999999988884 33
Q ss_pred C-eEEEEEcC---CCc-----eeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCC
Q 001248 973 T-QLAIFETT---KLE-----CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV 1043 (1114)
Q Consensus 973 ~-~i~iwd~~---~~~-----~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~ 1043 (1114)
+ .+..++.. .+. ....+...++......++++++|.++++...++.|.+||..+|+...... .+.
T Consensus 216 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~----~~~-- 289 (343)
T 2qe8_A 216 STSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT----DEK-- 289 (343)
T ss_dssp CSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE----CGG--
T ss_pred CCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE----CCc--
Confidence 3 55555432 111 00111111223456789999999988888889999999986676543332 111
Q ss_pred CCCCccceEEEecCCCCCeEEEEeCCCcEEEE
Q 001248 1044 SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1075 (1114)
Q Consensus 1044 ~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW 1075 (1114)
...|..++|.+ +++++++.+..+.+.+|
T Consensus 290 ---~~~p~~va~~~-~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 290 ---LSWTDSFNFGS-DGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp ---GSCEEEEEECT-TSCEEEEECCGGGSGGG
T ss_pred ---eecCCeeEECC-CCcEEEEeCcccccccc
Confidence 13466899998 57777777655544333
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.24 E-value=1.9e-09 Score=116.55 Aligned_cols=225 Identities=10% Similarity=0.074 Sum_probs=150.1
Q ss_pred CCccEEEEeeCCCEEEEEe--CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEE
Q 001248 819 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 896 (1114)
Q Consensus 819 ~~v~~v~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~ 896 (1114)
.-..+..|++++..|.... ++.|..||..++.. ..+. ....+.++++++ +++++++ . ++.|.+||..+++...
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~-dG~l~v~-~-~~~l~~~d~~~g~~~~ 87 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQ-SGGYVAT-I-GTKFCALNWKEQSAVV 87 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBT-TSSEEEE-E-TTEEEEEETTTTEEEE
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECC-CCCEEEE-E-CCeEEEEECCCCcEEE
Confidence 3456789999766555554 78999999987654 2332 346799999999 7885554 4 5689999998876533
Q ss_pred eecc----cccCeeEEEEcCCCCEEEEEeCC---------CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccC
Q 001248 897 KLKG----HSKRITGLAFSHALNVLVSSGAD---------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 963 (1114)
Q Consensus 897 ~l~~----h~~~V~~l~~s~d~~~l~s~s~D---------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspd 963 (1114)
.... ....+++++++|+|+++++...+ ..-.||.++...... ...... .....++|+||
T Consensus 88 ~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~~~~~-------~~pngi~~spd 159 (297)
T 3g4e_A 88 LATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVK-KYFDQV-------DISNGLDWSLD 159 (297)
T ss_dssp EEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEE-EEEEEE-------SBEEEEEECTT
T ss_pred EEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEE-EEeecc-------ccccceEEcCC
Confidence 2221 22457899999999987765332 334566655321111 111111 23578999999
Q ss_pred CcEEEEE--eCCeEEEEEc--CCCcee--eeee-cCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCC
Q 001248 964 QIHFLVV--HETQLAIFET--TKLECV--KQWV-PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPS 1036 (1114)
Q Consensus 964 g~~l~~~--~d~~i~iwd~--~~~~~~--~~~~-~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~ 1036 (1114)
|+.|+++ .++.|.+|++ .++... +.+. ...+...+..++++++|.+.++...++.|.+||..+|+.+..+.
T Consensus 160 g~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~-- 237 (297)
T 3g4e_A 160 HKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK-- 237 (297)
T ss_dssp SCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE--
T ss_pred CCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE--
Confidence 9987663 4688999987 455432 1121 11234568899999999888877778899999999999988876
Q ss_pred cccCCCCCCCCccceEEEec-CCCCCeEEEEe
Q 001248 1037 AYLPAGVSSSNVHPLVIAAH-PQEPNEFALGL 1067 (1114)
Q Consensus 1037 ~~~~~~~~~~~v~~~~~~~~-~~d~~~l~s~~ 1067 (1114)
.+. ..+.+++|. | |++.|.+++
T Consensus 238 --~p~------~~~t~~~f~g~-d~~~L~vt~ 260 (297)
T 3g4e_A 238 --LPV------DKTTSCCFGGK-NYSEMYVTC 260 (297)
T ss_dssp --CSS------SBEEEEEEESG-GGCEEEEEE
T ss_pred --CCC------CCceEEEEeCC-CCCEEEEEc
Confidence 321 235589998 5 566665544
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.6e-05 Score=92.43 Aligned_cols=525 Identities=10% Similarity=0.032 Sum_probs=277.9
Q ss_pred eEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEE-eCCCeEEEEEcc
Q 001248 372 TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA-YSRHIVQIYSYH 450 (1114)
Q Consensus 372 ~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~~dg~i~iwd~~ 450 (1114)
+||++ ..+.|+..++++...... +....-..+..|+|++++..|..+ ..++.|..+++.
T Consensus 8 ~Ll~s--~~~~I~~i~l~~~~~~~~------------------~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~ 67 (628)
T 4a0p_A 8 FLLFS--RRADIRRISLETNNNNVA------------------IPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMN 67 (628)
T ss_dssp EEEEE--ETTEEEEEESSCTTCEEE------------------CCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEEE--eCCcEEEEECCCCCcceE------------------EEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECC
Confidence 34554 467889999886543221 011122367899999976666554 457889999987
Q ss_pred CCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEe-eccccCEEEEeeccCCCceEEEEE
Q 001248 451 GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKENIQFIFST 529 (1114)
Q Consensus 451 ~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~ 529 (1114)
...... .+.........+++.+.++. +.++-...+.|.+.++.... ...+ ...-.....+++.+. +|.+.++-
T Consensus 68 g~~~~~---v~~~g~~~P~GlAvD~~~~~-LY~tD~~~~~I~v~~~dG~~-~~~l~~~~l~~P~~iavdp~-~G~lY~tD 141 (628)
T 4a0p_A 68 GSALEH---VVEFGLDYPEGMAVDWLGKN-LYWADTGTNRIEVSKLDGQH-RQVLVWKDLDSPRALALDPA-EGFMYWTE 141 (628)
T ss_dssp SCSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSTT-CEEEECSSCCCEEEEEEETT-TTEEEEEE
T ss_pred CCCcEE---EEeCCCCCcceEEEEeCCCE-EEEEECCCCEEEEEecCCCc-EEEEEeCCCCCcccEEEccC-CCeEEEeC
Confidence 653221 12222245778999877776 45566667889999976443 3333 234455678887653 33444443
Q ss_pred -ecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEE-eCCCeEEEEECCCcc
Q 001248 530 -ALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-GDDFSIKFWDMDSVQ 607 (1114)
Q Consensus 530 -~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~ 607 (1114)
+..+.|...+++........ ........+++++ +++.|+.+ ...+.|..+|+....
T Consensus 142 ~g~~~~I~r~~~dG~~~~~l~-~~~~~P~GlalD~---------------------~~~~LY~aD~~~~~I~~~d~dG~~ 199 (628)
T 4a0p_A 142 WGGKPKIDRAAMDGSERTTLV-PNVGRANGLTIDY---------------------AKRRLYWTDLDTNLIESSNMLGLN 199 (628)
T ss_dssp CSSSCEEEEEETTSCSCEEEE-CSCSSEEEEEEET---------------------TTTEEEEEETTTTEEEEEETTSCS
T ss_pred CCCCCEEEEEeCCCCceEEEE-CCCCCcceEEEcc---------------------ccCEEEEEECCCCEEEEEcCCCCc
Confidence 22456666666543322222 1223344444444 43344444 356788888886543
Q ss_pred eEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhcc
Q 001248 608 LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAAT 687 (1114)
Q Consensus 608 ~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1114)
. ..+... ......+++.. +.++++-...+.|...|..++.. ...+.......
T Consensus 200 ~-~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~-~~~l~~~~~~p----------------------- 251 (628)
T 4a0p_A 200 R-EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQN-RTIIQGHLDYV----------------------- 251 (628)
T ss_dssp C-EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS-CEEEECSCCSC-----------------------
T ss_pred e-EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCc-eEEEecCCCCc-----------------------
Confidence 3 233221 12345677764 44445555577888888776632 22222110000
Q ss_pred ccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEc-cCccee
Q 001248 688 SAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFT-NSGNAI 766 (1114)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-~~~~~l 766 (1114)
..|.++.-........|.. ..+....+++. |.+. .
T Consensus 252 ------------------------------------~~i~v~~~~~q~~~n~C~~-------~ng~C~~~C~~~~~~~-~ 287 (628)
T 4a0p_A 252 ------------------------------------MDILVFHSSRQSGWNECAS-------SNGHCSHLCLAVPVGG-F 287 (628)
T ss_dssp ------------------------------------CEEEEECGGGSCCCCTTTT-------TGGGCSSEEEEETTTE-E
T ss_pred ------------------------------------ceeeeeeecccccceEecc-------CCCCcchhhhcCCCCC-e
Confidence 0111221111000111110 00111112221 2122 1
Q ss_pred eecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEeCCeEEEEEc
Q 001248 767 LALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNM 846 (1114)
Q Consensus 767 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~ 846 (1114)
.+.+..|... .....+|.. ...+|+.+....|+-..+
T Consensus 288 ~C~C~~g~~l----------------------------------------~~d~~~C~~---~~~~Ll~s~~~~i~~i~l 324 (628)
T 4a0p_A 288 VCGCPAHYSL----------------------------------------NADNRTCSA---PTTFLLFSQKSAINRMVI 324 (628)
T ss_dssp EEECSTTCEE----------------------------------------CTTSSCEEC---CSSEEEEEETTEEEEECC
T ss_pred eEEcCCCcEe----------------------------------------cccCCcCcc---ccceeeeeccceEEEEec
Confidence 2222222110 111122322 245677766777777666
Q ss_pred CCCccc-cccCC-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecc------cccCeeEEEEcCCCCEEE
Q 001248 847 MTFKTM-ATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG------HSKRITGLAFSHALNVLV 918 (1114)
Q Consensus 847 ~~~~~~-~~~~~-~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~------h~~~V~~l~~s~d~~~l~ 918 (1114)
...... ..+.. .-..+.+++|.+.++.++.+=...+.|+.+++........+.. ....+.+|++...++.|.
T Consensus 325 ~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY 404 (628)
T 4a0p_A 325 DEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIY 404 (628)
T ss_dssp CTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEE
T ss_pred ccccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEE
Confidence 533211 11221 2345889999995555555555677898888764332222322 234678999988766554
Q ss_pred -EEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEcc-CCcEEEE-EeCC--eEEEEEcCCCceeeeeecCC
Q 001248 919 -SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ-DQIHFLV-VHET--QLAIFETTKLECVKQWVPRE 993 (1114)
Q Consensus 919 -s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fsp-dg~~l~~-~~d~--~i~iwd~~~~~~~~~~~~~~ 993 (1114)
+-+..+.|.+.+++.... . .... ... .....+++.| .|.++.+ .... .|...++.. .....+.. .
T Consensus 405 ~td~~~~~I~v~~~~G~~~-~-~l~~---~~l---~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG-~~~~~l~~-~ 474 (628)
T 4a0p_A 405 WTCEATNVINVTRLDGRSV-G-VVLK---GEQ---DRPRAVVVNPEKGYMYFTNLQERSPKIERAALDG-TEREVLFF-S 474 (628)
T ss_dssp EEETTTTEEEEEETTSCEE-E-EEEE---CTT---CCEEEEEEETTTTEEEEEEEETTEEEEEEEETTS-CSCEEEEC-S
T ss_pred EEcCCCCEEEEEECCCCeE-E-EEEe---CCC---CceeeEEEecCCCeEEEeecCCCCCeEEEEeCCC-CCcEEEEe-c
Confidence 556678899999875321 1 1111 111 2468999999 5555555 3333 577777653 33333332 2
Q ss_pred CCcCeeEEEECCCCCEEEEEEc-CCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcE
Q 001248 994 SSAPITHATFSCDSQLVYACFL-DATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGV 1072 (1114)
Q Consensus 994 h~~~v~~l~~s~dg~~l~s~s~-Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v 1072 (1114)
.-.....|+++++++.|+.+.. .+.|...+++.. ....+.. + ....|..++... +.+..+=...+.|
T Consensus 475 ~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~-~r~~~~~------~---~~~~P~glav~~--~~ly~tD~~~~~i 542 (628)
T 4a0p_A 475 GLSKPIALALDSRLGKLFWADSDLRRIESSDLSGA-NRIVLED------S---NILQPVGLTVFE--NWLYWIDKQQQMI 542 (628)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEC------S---SCSCEEEEEEET--TEEEEEETTTTEE
T ss_pred cCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCC-ceEEEEc------C---CCCCcEEEEEEC--CEEEEEECCCCeE
Confidence 2456799999999888877754 478999998544 3333321 0 012355677653 4445555556788
Q ss_pred EEEeccCCC
Q 001248 1073 HVFEPLESE 1081 (1114)
Q Consensus 1073 ~vW~i~~~~ 1081 (1114)
...+..+|+
T Consensus 543 ~~~~k~~G~ 551 (628)
T 4a0p_A 543 EKIDMTGRE 551 (628)
T ss_dssp EEEETTSSS
T ss_pred EEEECcCCC
Confidence 888887776
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=4.7e-09 Score=126.55 Aligned_cols=203 Identities=12% Similarity=0.117 Sum_probs=136.7
Q ss_pred EEEEEecCCCcEEEEEeCCC-------------------cEEEEEcccceEEEeecc--cc-------cCeeEEEEcCCC
Q 001248 863 TFLAFHPQDNNIIAIGMDDS-------------------SIQIYNVRVDEVKSKLKG--HS-------KRITGLAFSHAL 914 (1114)
Q Consensus 863 ~~l~~sp~d~~~la~g~~dg-------------------~v~iwd~~~~~~~~~l~~--h~-------~~V~~l~~s~d~ 914 (1114)
..++++| ++.+|++++.++ .|..+|..+|+.+..++. |. ....-+....+|
T Consensus 246 ~~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG 324 (677)
T 1kb0_A 246 DSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAG 324 (677)
T ss_dssp SCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETT
T ss_pred cceeEcC-CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCC
Confidence 4678899 677888777664 499999999998877653 31 122223334477
Q ss_pred ---CEEEEEeCCCcEEEEeCCCCccccccccccC--------CCC------------C----C---CCCCceEEEEccCC
Q 001248 915 ---NVLVSSGADSQLCVWSSDGWEKQKNRFLQIP--------TGR------------T----P---TAQSDTRVQFHQDQ 964 (1114)
Q Consensus 915 ---~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~--------~~~------------~----~---~~~~i~~v~fspdg 964 (1114)
+.|+.++.+|.|.++|..+++.......... .+. . + ....-..++|+|++
T Consensus 325 ~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~ 404 (677)
T 1kb0_A 325 KPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT 404 (677)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT
T ss_pred cEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC
Confidence 6899999999999999999876432211100 000 0 0 00011367899998
Q ss_pred cEEEEE-eC-------------------------------------------CeEEEEEcCCCceeeeeecCCCCcCeeE
Q 001248 965 IHFLVV-HE-------------------------------------------TQLAIFETTKLECVKQWVPRESSAPITH 1000 (1114)
Q Consensus 965 ~~l~~~-~d-------------------------------------------~~i~iwd~~~~~~~~~~~~~~h~~~v~~ 1000 (1114)
.++++. .+ +.|..||+.+++.+-.+.. ..++..
T Consensus 405 ~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~ 481 (677)
T 1kb0_A 405 GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH---VSPWNG 481 (677)
T ss_dssp TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE---SSSCCC
T ss_pred CEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC---CCCCcC
Confidence 888773 21 6799999999998777653 334555
Q ss_pred EEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCC-eEEEEeC-----------
Q 001248 1001 ATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGLS----------- 1068 (1114)
Q Consensus 1001 l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~-~l~s~~~----------- 1068 (1114)
..++.++.++++++.||.+++||..+|+.+.++. .+.+ +...-+.|.. +|+ ++++.+.
T Consensus 482 g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~----~~~~-----~~~~p~~y~~-~G~~~v~~~~G~~~~~~~~~~~ 551 (677)
T 1kb0_A 482 GTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP----TGTG-----VVAAPSTYMV-DGRQYVSVAVGWGGVYGLAARA 551 (677)
T ss_dssp CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE----CSSC-----CCSCCEEEEE-TTEEEEEEEECCCHHHHHHCCS
T ss_pred cceEeCCCEEEEECCCCcEEEEECCCCceeeeee----CCCC-----cccCCEEEEe-CCEEEEEEeccCCccccccccc
Confidence 5677788899999999999999999999999887 3333 2222455655 455 4444333
Q ss_pred -----CCcEEEEeccC
Q 001248 1069 -----DGGVHVFEPLE 1079 (1114)
Q Consensus 1069 -----Dg~v~vW~i~~ 1079 (1114)
.+.+.+|.+..
T Consensus 552 ~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 552 TERQGPGTVYTFVVGG 567 (677)
T ss_dssp CSCCCCCEEEEEEETC
T ss_pred cccCCCCeEEEEeccc
Confidence 47888888875
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.4e-09 Score=132.82 Aligned_cols=246 Identities=13% Similarity=0.100 Sum_probs=153.6
Q ss_pred CCCCceEEEEcCCCCeEEEEEecC----CcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCC
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNV----GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~d----g~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1114)
|...+..++|||||++|+++.+.. .+|++||+.+|+.+.. . +. ......++|+ ||
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~-----------------~~--~~k~~~~~Ws-Dg 185 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-P-----------------LK--DVKFSGISWL-GN 185 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-E-----------------EE--EEESCCCEEE-TT
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-c-----------------cC--CceeccEEEe-CC
Confidence 455788999999999855554433 4699999999986542 1 11 0113568999 99
Q ss_pred CeEEEEeCCC-------------eEEEEEccCCcee-eeeEeecc-ccCCeeEEEecCCCCeeEEEEec--CCCCEEEEe
Q 001248 433 SLFGVAYSRH-------------IVQIYSYHGGDEV-RQHLEIDA-HVGGVNDIAFSHPNKQLCVITCG--DDKTIKVWD 495 (1114)
Q Consensus 433 ~~las~~~dg-------------~i~iwd~~~~~~~-~~~~~l~~-h~~~V~~v~~s~d~~~~~l~s~~--~d~~i~iwd 495 (1114)
+.|+.++.+. .|++|++.++..- ..+..... |...+..+.|||||+.+++.+.. .+..|++||
T Consensus 186 ~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d 265 (693)
T 3iuj_A 186 EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKD 265 (693)
T ss_dssp TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEE
T ss_pred CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEE
Confidence 9999998774 3999999876531 11222333 55567899999999963333222 235799999
Q ss_pred CCCCc-ceeEeeccccCEEEEeeccCCCceEEEEEecC---CeEEEEEcCCCCC--eeeecCCCCeeEEEEEecCCCeEE
Q 001248 496 ATNGA-KQYIFEGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTY 569 (1114)
Q Consensus 496 ~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~g~~~~ 569 (1114)
+.++. ....+..+....... +++.. +.+++....+ +.|..+|+.+... ...+..+...+.
T Consensus 266 ~~~~~~~~~~l~~~~~~~~~~-~~~~g-~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~------------ 331 (693)
T 3iuj_A 266 LSQENAPLLTVQGDLDADVSL-VDNKG-STLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL------------ 331 (693)
T ss_dssp TTSTTCCCEEEECSSSSCEEE-EEEET-TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE------------
T ss_pred CCCCCCceEEEeCCCCceEEE-EeccC-CEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE------------
Confidence 98764 456666666665554 33322 2445554443 5788888876543 122222222222
Q ss_pred eeecccceeEEEecCCCCEEEEEeC-CC--eEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCC----CcE
Q 001248 570 QGFRKRSLGVVQFDTTKNRFLAAGD-DF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND----NGI 642 (1114)
Q Consensus 570 ~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d----g~i 642 (1114)
.|+++++.|+.... ++ .|++|++..+ ....+.... ...+..+.+++++..++....+ +++
T Consensus 332 -----------~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~l 398 (693)
T 3iuj_A 332 -----------TVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPG-LGSVSGFNGKHDDPALYFGFENYAQPPTL 398 (693)
T ss_dssp -----------EEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCEE
T ss_pred -----------EEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCC-CceEEeeecCCCCCEEEEEecCCCCCCEE
Confidence 44444555665553 43 6889998744 445554332 2245566778888777665544 789
Q ss_pred EEEEccCC
Q 001248 643 KILATSDG 650 (1114)
Q Consensus 643 ~iwd~~~~ 650 (1114)
..||+.++
T Consensus 399 ~~~d~~~g 406 (693)
T 3iuj_A 399 YRFEPKSG 406 (693)
T ss_dssp EEECTTTC
T ss_pred EEEECCCC
Confidence 99998776
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.5e-09 Score=120.05 Aligned_cols=251 Identities=13% Similarity=0.087 Sum_probs=145.8
Q ss_pred CCceEEEEcCCCCeEEEEEe--cCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 359 SSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 359 ~~v~~v~~spdg~~ll~tg~--~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
..+..++++|+|+ ++++.. .++.++||.+.+++.. .+.-|. ....+|-..+..++++++|++++
T Consensus 17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~----------~~~~~~~~~p~gv~~d~~g~L~v 82 (343)
T 2qe8_A 17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLI---PFPPQS----------GNAIITFDTVLGIKSDGNGIVWM 82 (343)
T ss_dssp SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEE---ESCCCC----------SSCCCCCSCEEEEEECSSSEEEE
T ss_pred CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCee---cCCCcc----------cCcccceeEeeEEEEcCCCcEEE
Confidence 6889999999999 577653 2343566666555432 121111 01234667899999999998776
Q ss_pred EEeC-----CCeEEEEEccCCceeeeeEeec----cccCCeeEEEecCCCCeeEEEEec---CCCCEEEEeCCCCcceeE
Q 001248 437 VAYS-----RHIVQIYSYHGGDEVRQHLEID----AHVGGVNDIAFSHPNKQLCVITCG---DDKTIKVWDATNGAKQYI 504 (1114)
Q Consensus 437 s~~~-----dg~i~iwd~~~~~~~~~~~~l~----~h~~~V~~v~~s~d~~~~~l~s~~---~d~~i~iwd~~~~~~~~~ 504 (1114)
+-.. ++.|.+||+.+++.++.. .+. .+...+..+++++++.. ++++.. .++.|.+||+.+++..+.
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV 160 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence 6543 578999999988755422 221 22345789999987664 455555 678999999998887666
Q ss_pred eecccc-----------------------------CEEEEeeccCCCceEEEEEecCC-eEEEEEcCCCC--CeeeecCC
Q 001248 505 FEGHEA-----------------------------PVYSVCPHHKENIQFIFSTALDG-KIKAWLYDNLG--SRVDYEAP 552 (1114)
Q Consensus 505 ~~~h~~-----------------------------~v~~~~~~~~~~~~~l~s~~~d~-~i~~wd~~~~~--~~~~~~~~ 552 (1114)
+.+|.. .+..++|++ +++.|+.+..++ .+..++..... .......
T Consensus 161 ~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~--dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~- 237 (343)
T 2qe8_A 161 LQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA--ENEWLYLSPMHSTSMYRIKSADLSNLQLTDAEL- 237 (343)
T ss_dssp CTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECT--TSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHH-
T ss_pred ecCCCcccccccceeECCEEEEeccCCCceeceecccceeEecc--CCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhh-
Confidence 654321 134444432 334444444433 22222211000 0000000
Q ss_pred CCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCE
Q 001248 553 GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCL 632 (1114)
Q Consensus 553 ~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~ 632 (1114)
...+. ..+. .....-++++++|+.+++...++.|.+||..+++........ ......+++|.+++++
T Consensus 238 ~~~~~-----------~~g~-~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~~~p~~va~~~~g~l 304 (343)
T 2qe8_A 238 GSKIE-----------RYSE-KPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KLSWTDSFNFGSDGYL 304 (343)
T ss_dssp HTTCE-----------EEEE-CCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GGSCEEEEEECTTSCE
T ss_pred hcceE-----------eccc-CCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ceecCCeeEECCCCcE
Confidence 00000 0000 012233677888888888888999999998566643333221 2335678999999887
Q ss_pred EEEEeCCCc
Q 001248 633 LAVSTNDNG 641 (1114)
Q Consensus 633 l~~~~~dg~ 641 (1114)
+++.+..+.
T Consensus 305 ~v~~~~~~~ 313 (343)
T 2qe8_A 305 YFDCNQLHH 313 (343)
T ss_dssp EEEECCGGG
T ss_pred EEEeCcccc
Confidence 777665433
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.17 E-value=8.5e-09 Score=113.00 Aligned_cols=227 Identities=12% Similarity=0.020 Sum_probs=145.1
Q ss_pred ceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeC
Q 001248 361 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS 440 (1114)
Q Consensus 361 v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~ 440 (1114)
..++.|+|++..+++++..++.|..||..+++... +. +...|.+++|+|+|+++++. .
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~~-~~~~v~~i~~~~dg~l~v~~-~ 108 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV--------------------HA-LPFMGSALAKISDSKQLIAS-D 108 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--------------------EE-CSSCEEEEEEEETTEEEEEE-T
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------------------EE-CCCcceEEEEeCCCeEEEEE-C
Confidence 46889999987788888888999999998875432 11 13479999999999987765 4
Q ss_pred CCeEEEEEccCCceeeeeEeecc-c-cCCeeEEEecCCCCeeEEEEecC------CCCEEEEeCCCCcceeEeeccccCE
Q 001248 441 RHIVQIYSYHGGDEVRQHLEIDA-H-VGGVNDIAFSHPNKQLCVITCGD------DKTIKVWDATNGAKQYIFEGHEAPV 512 (1114)
Q Consensus 441 dg~i~iwd~~~~~~~~~~~~l~~-h-~~~V~~v~~s~d~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~h~~~v 512 (1114)
+ .|.+||..+++... ...... + ...+.+++++++|+ ++++... .+.|..++ +++. ..+..+....
T Consensus 109 ~-gl~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~~~~~~~~ 181 (326)
T 2ghs_A 109 D-GLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA--KGKV-TKLFADISIP 181 (326)
T ss_dssp T-EEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE--TTEE-EEEEEEESSE
T ss_pred C-CEEEEECCCCcEEE-EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe--CCcE-EEeeCCCccc
Confidence 4 49999998876432 212111 1 23588999999998 4444321 23455555 4543 3333344456
Q ss_pred EEEeeccCCCceEE-EEEecCCeEEEEEcC--CC-CCe--eeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCC
Q 001248 513 YSVCPHHKENIQFI-FSTALDGKIKAWLYD--NL-GSR--VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 586 (1114)
Q Consensus 513 ~~~~~~~~~~~~~l-~s~~~d~~i~~wd~~--~~-~~~--~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~ 586 (1114)
..++|++ +++.+ ++.+.++.|.+||++ ++ ... ..+. .+.. .......++++++|
T Consensus 182 ~~i~~s~--dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~---------~~~~---------~~~~p~gi~~d~~G 241 (326)
T 2ghs_A 182 NSICFSP--DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFI---------DSTG---------IKGGMDGSVCDAEG 241 (326)
T ss_dssp EEEEECT--TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEE---------ECTT---------SSSEEEEEEECTTS
T ss_pred CCeEEcC--CCCEEEEEECCCCEEEEEEcccccCCcccCceEEE---------ECCC---------CCCCCCeeEECCCC
Confidence 7788754 45555 444557899999986 32 110 0000 0000 01123346667777
Q ss_pred CEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEc-CCCCEEEEEeCC
Q 001248 587 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTND 639 (1114)
Q Consensus 587 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~~~~~d 639 (1114)
++.++...++.|.+||. +++.+..+..+. ..+.+++|+ ++++.|++++..
T Consensus 242 ~lwva~~~~~~v~~~d~-~g~~~~~i~~~~--~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 242 HIWNARWGEGAVDRYDT-DGNHIARYEVPG--KQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp CEEEEEETTTEEEEECT-TCCEEEEEECSC--SBEEEEEEESTTSCEEEEEEBC
T ss_pred CEEEEEeCCCEEEEECC-CCCEEEEEECCC--CCcEEEEEecCCCCEEEEEecC
Confidence 77777667789999998 677777776543 357899998 888877665543
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.17 E-value=3.5e-09 Score=128.00 Aligned_cols=191 Identities=15% Similarity=0.128 Sum_probs=126.2
Q ss_pred EEEEEecCCCcEEEEEeCCCc-------------------EEEEEcccceEEEeecc--cc-------cCeeEEEEcCCC
Q 001248 863 TFLAFHPQDNNIIAIGMDDSS-------------------IQIYNVRVDEVKSKLKG--HS-------KRITGLAFSHAL 914 (1114)
Q Consensus 863 ~~l~~sp~d~~~la~g~~dg~-------------------v~iwd~~~~~~~~~l~~--h~-------~~V~~l~~s~d~ 914 (1114)
..++++| +..++++++.++. |..||..+|+.+..++. |. ..+.-.....+|
T Consensus 238 ~~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G 316 (689)
T 1yiq_A 238 DSFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDG 316 (689)
T ss_dssp SCEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETT
T ss_pred cceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCC
Confidence 3678999 7778888888764 99999999999887754 22 112122222356
Q ss_pred C---EEEEEeCCCcEEEEeCCCCcccccccccc------------------------CCCC-------CCCCCCceEEEE
Q 001248 915 N---VLVSSGADSQLCVWSSDGWEKQKNRFLQI------------------------PTGR-------TPTAQSDTRVQF 960 (1114)
Q Consensus 915 ~---~l~s~s~D~~v~iwd~~~~~~~~~~~~~~------------------------~~~~-------~~~~~~i~~v~f 960 (1114)
+ .++.++.+|.++++|..+++......... ..+. ......-..++|
T Consensus 317 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~ 396 (689)
T 1yiq_A 317 KPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSY 396 (689)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEE
T ss_pred cEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceE
Confidence 5 78899999999999999987642111000 0000 000001134789
Q ss_pred ccCCcEEEEE-e---------------------------------------------CCeEEEEEcCCCceeeeeecCCC
Q 001248 961 HQDQIHFLVV-H---------------------------------------------ETQLAIFETTKLECVKQWVPRES 994 (1114)
Q Consensus 961 spdg~~l~~~-~---------------------------------------------d~~i~iwd~~~~~~~~~~~~~~h 994 (1114)
+|+..++++. . ++.|..||+.+++.+-.....
T Consensus 397 dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-- 474 (689)
T 1yiq_A 397 NPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV-- 474 (689)
T ss_dssp ETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES--
T ss_pred CCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC--
Confidence 9988877763 2 367999999999988776532
Q ss_pred CcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCC-eEEEEe
Q 001248 995 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGL 1067 (1114)
Q Consensus 995 ~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~-~l~s~~ 1067 (1114)
.++..-.++..+.++++++.||.|+.||..+|+.+.++. ++.+ +...-+.|.. ||+ ++++.+
T Consensus 475 -~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~----~~~~-----~~~~p~ty~~-~G~qyv~~~~ 537 (689)
T 1yiq_A 475 -TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQP----AASG-----VMAAPVTYSV-DGEQYVTFMA 537 (689)
T ss_dssp -SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE----CSSC-----CCSCCEEEEE-TTEEEEEEEE
T ss_pred -CCccCccceECCCEEEEECCCCcEEEEECCCCccceeee----CCCC-----cccCceEEEE-CCEEEEEEEe
Confidence 233334566788899999999999999999999998887 4433 2222355655 455 455443
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=2.1e-05 Score=93.11 Aligned_cols=524 Identities=10% Similarity=0.050 Sum_probs=264.7
Q ss_pred cCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEe-CCCeEEEEEccCCceeee
Q 001248 379 NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY-SRHIVQIYSYHGGDEVRQ 457 (1114)
Q Consensus 379 ~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-~dg~i~iwd~~~~~~~~~ 457 (1114)
....|+..++........ .....-..+..|+|++.+..|..+. ..+.|..+++.+......
T Consensus 16 ~~~~I~~i~~~~~~~~~~------------------~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~ 77 (619)
T 3s94_A 16 NRRDLRLVDATNGKENAT------------------IVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN 77 (619)
T ss_dssp CSSBEEEECCC---------------------------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE
T ss_pred ccccEEEEeCCCCcceEE------------------EEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE
Confidence 467788888875421110 1222234678999999777666654 467788898876532111
Q ss_pred eEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEee-ccccCEEEEeeccCCCceEEEEEe-cCCeE
Q 001248 458 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTA-LDGKI 535 (1114)
Q Consensus 458 ~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~-~d~~i 535 (1114)
.+...-.....+++.+.++. ++++-...+.|.+.++... ....+. ..-.....+++.+.. |.++++-- ..+.|
T Consensus 78 --v~~~~~~~P~GlAvD~~~~~-ly~~d~~~~~I~v~~~dG~-~~~~l~~~~l~~P~~Iavdp~~-g~ly~tD~g~~~~I 152 (619)
T 3s94_A 78 --VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGS-LRKVLFWQELDQPRAIALDPSS-GFMYWTDWGEVPKI 152 (619)
T ss_dssp --EECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSC-SCEEEECSSCSCCCCEEEETTT-TEEEEEECSSSCEE
T ss_pred --EEeCCCCCcCeEEEEecCCE-EEEEeCCCCEEEEEECCCC-CEEEEEeCCCCCCceEEEecCC-CeEEEeccCCCCEE
Confidence 22222346889999997775 4566667789999997644 333332 333445566765432 33444431 23455
Q ss_pred EEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEE-eCCCeEEEEECCCcceEEEecc
Q 001248 536 KAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-GDDFSIKFWDMDSVQLLTSIDA 614 (1114)
Q Consensus 536 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~ 614 (1114)
...+++.................++++++ +..|+.+ ...+.|...|+...........
T Consensus 153 ~r~~~dG~~~~~l~~~~~~~P~Glald~~---------------------~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~ 211 (619)
T 3s94_A 153 ERAGMDGSSRFIIINSEIYWPNGLTLDYE---------------------EQKLYWADAKLNFIHKSNLDGTNRQAVVKG 211 (619)
T ss_dssp EEEETTSCSCEEEECSSCSSEEEEEEETT---------------------TTEEEEEETTTCCEEEESSSCCEEC-----
T ss_pred EEEECCCCceEEEEeCCCCCCcEEEEEcc---------------------CCEEEEEeCCCCeEEEecCCCCccEEEEeC
Confidence 55555433222222222233444444443 3344444 3567788888765433322221
Q ss_pred CCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccc
Q 001248 615 DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADR 694 (1114)
Q Consensus 615 ~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1114)
. ......+++..+ .++++-...+.|...|..++.. ...+..... .+
T Consensus 212 ~--~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~-~~~i~~~~~-------------~p----------------- 257 (619)
T 3s94_A 212 S--LPHPFALTLFED-ILYWTDWSTHSILACNKYTGEG-LREIHSDIF-------------SP----------------- 257 (619)
T ss_dssp ------CCCEEESSS-EEEEECTTTCSEEEEESSSCCC-CEECCSCCC-------------CC-----------------
T ss_pred C--CCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcc-cEEEecCCC-------------CC-----------------
Confidence 1 123357788765 4444555677888888877733 222211100 00
Q ss_pred cccccccCCCCCCccccCCCcccccccCCCceeEEEeccCC-CCccccccccCccccccceEEEEE-ccCcceeeecccC
Q 001248 695 AASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS-EPNQCRSLRLPENLRATKISRLIF-TNSGNAILALASN 772 (1114)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~-s~~~~~l~~~~~d 772 (1114)
..|.++...... ....|.. ..+....+++ +|.....-+.+.+
T Consensus 258 -----------------------------~~i~v~~~~~qp~~~n~C~~-------~ng~Cs~lCl~~~~~~~~~C~C~~ 301 (619)
T 3s94_A 258 -----------------------------MDIHAFSQQRQPNATNPCGI-------DNGGCSHLCLMSPVKPFYQCACPT 301 (619)
T ss_dssp -----------------------------SEEEECCGGGSCCCCCTTTT-------TGGGCSSEEEECSSTTSEEEECCT
T ss_pred -----------------------------cEEEEEccccCCCccccccC-------CCCcccceEECCCCCCCceEeCCc
Confidence 011111110000 0000000 0011111111 1211111111222
Q ss_pred ceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccc
Q 001248 773 AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM 852 (1114)
Q Consensus 773 g~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~ 852 (1114)
|.. + .....+|.. ....+|+.+..+.|+..++......
T Consensus 302 g~~--------------------------------l--------~~d~~~C~~--~~~~~Ll~~~~~~i~~i~l~~~~~~ 339 (619)
T 3s94_A 302 GVK--------------------------------L--------LENGKTCKD--GATELLLLARRTDLRRISLDTPDFT 339 (619)
T ss_dssp TCC--------------------------------B--------CTTSSCBCS--SCSEEEEEEESSCEEEEESSSTTCC
T ss_pred hhe--------------------------------e--------cccCcccCC--CCceEEEEEcccceEEEecCCCccc
Confidence 110 0 001111111 1234666666778888888765422
Q ss_pred c-ccC-CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCC-EEEEEeCCCcEEEE
Q 001248 853 A-TFM-PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN-VLVSSGADSQLCVW 929 (1114)
Q Consensus 853 ~-~~~-~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~-~l~s~s~D~~v~iw 929 (1114)
. .+. ..-..+.+++|++.++.++.+-...+.|+.+++........+........++++.+.+. +.++-+..+.|.+.
T Consensus 340 ~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~ 419 (619)
T 3s94_A 340 DIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVT 419 (619)
T ss_dssp CEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEE
Confidence 1 121 12345789999985566666555678899999876433333333335677899987555 44555567889999
Q ss_pred eCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE---eCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCC
Q 001248 930 SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLECVKQWVPRESSAPITHATFSCD 1006 (1114)
Q Consensus 930 d~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~---~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~d 1006 (1114)
++++.... .+. ... ......+++.|...+|..+ ....|...++..... ..+. ...-.....|+++++
T Consensus 420 ~~~G~~~~---~l~--~~~---l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~-~~l~-~~~l~~P~GlalD~~ 489 (619)
T 3s94_A 420 RLNGTMRK---ILI--SED---LEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR-VVLV-NTSLGWPNGLALDYD 489 (619)
T ss_dssp ETTSCSCE---EEE--CTT---CCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEE-CSSCSCEEEEEEETT
T ss_pred eCCCCeEE---EEE--ECC---CCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCcc-EEEE-eCCCCCCeeeEEccc
Confidence 98864321 111 111 1356899999974444443 235677777654332 2332 122457889999998
Q ss_pred CCEEEEEEc-CCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEe-CCCcEEEEeccCCC
Q 001248 1007 SQLVYACFL-DATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL-SDGGVHVFEPLESE 1081 (1114)
Q Consensus 1007 g~~l~s~s~-Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~-~Dg~v~vW~i~~~~ 1081 (1114)
+..|+.+.. .+.|..++++.......+... + ..|..++... + .|+... ..+.|...+..+++
T Consensus 490 ~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--l--------~~P~glav~~--~-~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 490 EGKIYWGDAKTDKIEVMNTDGTGRRVLVEDK--I--------PHIFGFTLLG--D-YVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp TTEEEEEETTTTEEEEEESSSCCCEEEEECC--C--------CSSCCEEEET--T-EEEEECTTSSCEEEEESSSCC
T ss_pred CCEEEEEECCCCEEEEEecCCCceEEEeccC--C--------CCcEEEEEEC--C-EEEEeecCCCeEEEEEcCCCc
Confidence 888877754 467999998654332222100 1 1233455543 3 455444 45678888877775
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.16 E-value=5.1e-10 Score=122.75 Aligned_cols=177 Identities=11% Similarity=0.033 Sum_probs=130.9
Q ss_pred CeeEEEEcCCCCeEEEEeCCCeEEEEEccCCce--------eeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEE
Q 001248 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDE--------VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 493 (1114)
Q Consensus 422 ~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~--------~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~i 493 (1114)
.++.+++++...++++|+.++ +++|+++.... .... ....+.. |++++| |++ +|+++ .++.|++
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~f--d~~--~L~v~-~~~~l~v 110 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCF--HGD--QVLVS-TRNALYS 110 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEE--ETT--EEEEE-ESSEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccce-EEeeCCC-eeEEEE--CCC--EEEEE-cCCcEEE
Confidence 689999999999999999986 66799765331 1111 1224666 999999 888 67777 7899999
Q ss_pred EeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeec
Q 001248 494 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR 573 (1114)
Q Consensus 494 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~ 573 (1114)
||+.+.........|...+.++.+... .+++++.||.|.+||+....... ..
T Consensus 111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p----~~av~~~dG~L~v~dl~~~~~~~----~~-------------------- 162 (388)
T 1xip_A 111 LDLEELSEFRTVTSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTKQ----LA-------------------- 162 (388)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEEE----EE--------------------
T ss_pred EEchhhhccCccceeecceeeEEecCC----CEEEEECCCCEEEEEccCCcccc----cc--------------------
Confidence 999887766677778888888775432 28888999999999998654321 11
Q ss_pred ccceeEEEecCCCCEEEEEeCCCeEEEEECCCcce--EEEecc----C---CCCCCcCeEEEcCCCCEEEEEe
Q 001248 574 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL--LTSIDA----D---GGLPASPRIRFNKDGCLLAVST 637 (1114)
Q Consensus 574 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~----~---~~~~~v~~~~~s~d~~~l~~~~ 637 (1114)
..+.+++|+|+| ++.|..||.+++|+...++. ..++.. + ++...|.++.|.+++.++++-.
T Consensus 163 -~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 163 -QNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp -ESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred -CCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 145666777776 67899999999999887775 555621 1 1345789999999998888643
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=5.8e-09 Score=125.77 Aligned_cols=79 Identities=11% Similarity=0.058 Sum_probs=58.6
Q ss_pred CeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccc-cCeeEEEEcCCCCEE
Q 001248 839 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS-KRITGLAFSHALNVL 917 (1114)
Q Consensus 839 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~s~d~~~l 917 (1114)
|.|..||+.+++.+..+.. ...+....+.. ++.++++++.||.+++||..+|+.+..+.... ....-+.|..+|+.+
T Consensus 457 g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~-~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~ 534 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEH-VSPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQY 534 (677)
T ss_dssp EEEEEEETTTTEEEEEEEE-SSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred cEEEEEeCCCCcEEeecCC-CCCCcCcceEe-CCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEE
Confidence 6799999999998877652 23344455666 66788889999999999999999998886433 333456777888755
Q ss_pred EE
Q 001248 918 VS 919 (1114)
Q Consensus 918 ~s 919 (1114)
+.
T Consensus 535 v~ 536 (677)
T 1kb0_A 535 VS 536 (677)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=5.5e-09 Score=127.50 Aligned_cols=242 Identities=11% Similarity=0.085 Sum_probs=157.1
Q ss_pred cccceEEEEEccCcceeeecc-----cCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEE
Q 001248 750 RATKISRLIFTNSGNAILALA-----SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF 824 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~-----~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v 824 (1114)
+...+..+.|||||++++.+. ....|++||+. +|..+...+ .......+
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~----------------------tg~~~~~~~----~~~k~~~~ 180 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVE----------------------SKQPLETPL----KDVKFSGI 180 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETT----------------------TCSEEEEEE----EEEESCCC
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECC----------------------CCCCCcccc----CCceeccE
Confidence 445788999999999888432 23567776654 444332111 11113567
Q ss_pred EEeeCCCEEEEEe-CC-------------eEEEEEcCCCcc----ccccCC-CCCCeEEEEEecCCCcEEEEEeC----C
Q 001248 825 ALSKNDSYVMSAS-GG-------------KISLFNMMTFKT----MATFMP-PPPAATFLAFHPQDNNIIAIGMD----D 881 (1114)
Q Consensus 825 ~~s~d~~~l~~~~-dg-------------~i~iwd~~~~~~----~~~~~~-~~~~i~~l~~sp~d~~~la~g~~----d 881 (1114)
+|+ ||+.|+.++ +. .|++|++.+... +..... +......+.|+| ||++|+.... +
T Consensus 181 ~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~ 258 (693)
T 3iuj_A 181 SWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE-DDRFLLISAANSTSG 258 (693)
T ss_dssp EEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT-TSCEEEEEEESSSSC
T ss_pred EEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCCCC
Confidence 899 999998887 53 399999987643 222333 445578899999 8887755432 3
Q ss_pred CcEEEEEcccce-EEEeecccccCeeEEEEcCCCCEEEEEe-CC---CcEEEEeCCCCccccccccccCCCCCCCCCCce
Q 001248 882 SSIQIYNVRVDE-VKSKLKGHSKRITGLAFSHALNVLVSSG-AD---SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDT 956 (1114)
Q Consensus 882 g~v~iwd~~~~~-~~~~l~~h~~~V~~l~~s~d~~~l~s~s-~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 956 (1114)
..|+++|+.++. ....+..+....... |+++|..|+..+ .| +.|..|++.++.......+. .+.. .+.
T Consensus 259 ~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~---~~~~---~~~ 331 (693)
T 3iuj_A 259 NRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI---PERQ---QVL 331 (693)
T ss_dssp CEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE---CCCS---SCE
T ss_pred cEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe---cCCC---CEE
Confidence 589999998763 345666666666655 666666655444 33 57999999876542222211 1111 233
Q ss_pred EEEEccCCcEEEE-E-eCC--eEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcC----CeEEEEEcCCCe
Q 001248 957 RVQFHQDQIHFLV-V-HET--QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD----ATVCVFSAANLK 1028 (1114)
Q Consensus 957 ~v~fspdg~~l~~-~-~d~--~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D----g~I~vwd~~~~~ 1028 (1114)
.|++++++|+. . .++ .|.+|++.++. ...+.. .+...+..+.++++++.|+....+ +.|+.||+.+++
T Consensus 332 --~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~-p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 332 --TVHSGSGYLFAEYMVDATARVEQFDYEGKR-VREVAL-PGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp --EEEEETTEEEEEEEETTEEEEEEECTTSCE-EEEECC-SSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred --EEEEECCEEEEEEEECCeeEEEEEECCCCe-eEEeec-CCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 89999999887 3 444 68999988554 344432 234567788889999887766555 889999998886
Q ss_pred ee
Q 001248 1029 LR 1030 (1114)
Q Consensus 1029 ~~ 1030 (1114)
..
T Consensus 408 ~~ 409 (693)
T 3iuj_A 408 IS 409 (693)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.12 E-value=2.8e-08 Score=111.63 Aligned_cols=158 Identities=8% Similarity=0.034 Sum_probs=98.8
Q ss_pred CCCeEEEEeCCCeEEEEEccCCceeeeeEeeccc-------cCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCccee
Q 001248 431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAH-------VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY 503 (1114)
Q Consensus 431 dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h-------~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 503 (1114)
++..|.+++.++.|..+|..+|+.+-.. .+... ...+.+.... ++. .++.++.++.|..+|..+|+.+.
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~~~~-~~~--~v~v~~~~g~l~a~d~~tG~~~W 127 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSV-SLAEKDGWFSKEPALLSGGVTV-SGG--HVYIGSEKAQVYALNTSDGTVAW 127 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEE-ECCC---CCSCCCCCEEEEEEE-ETT--EEEEEETTSEEEEEETTTCCEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeee-cCccccccccccCcccccCceE-eCC--EEEEEcCCCEEEEEECCCCCEEE
Confidence 3667788888899999999999866432 22111 1223222222 344 46677788999999999999887
Q ss_pred EeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEec
Q 001248 504 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 583 (1114)
Q Consensus 504 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~ 583 (1114)
.............. .+..++.++.++.|..+|..+++............ .. .... . ....
T Consensus 128 ~~~~~~~~~~~p~~----~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~-~~--~~~~-----------~--~~~~ 187 (376)
T 3q7m_A 128 QTKVAGEALSRPVV----SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSL-SL--RGES-----------A--PTTA 187 (376)
T ss_dssp EEECSSCCCSCCEE----ETTEEEEECTTSEEEEEETTTCCEEEEEECCC--------CCCC-----------C--CEEE
T ss_pred EEeCCCceEcCCEE----ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCce-ee--cCCC-----------C--cEEE
Confidence 76543322111111 12478888899999999998887776554432110 00 0000 0 0011
Q ss_pred CCCCEEEEEeCCCeEEEEECCCcceEEEecc
Q 001248 584 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA 614 (1114)
Q Consensus 584 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 614 (1114)
+..++.++.++.|..+|..+|+.+.....
T Consensus 188 --~~~v~~g~~~g~l~~~d~~tG~~~w~~~~ 216 (376)
T 3q7m_A 188 --FGAAVVGGDNGRVSAVLMEQGQMIWQQRI 216 (376)
T ss_dssp --TTEEEECCTTTEEEEEETTTCCEEEEEEC
T ss_pred --CCEEEEEcCCCEEEEEECCCCcEEEEEec
Confidence 23577788899999999999998877653
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.4e-08 Score=111.17 Aligned_cols=225 Identities=12% Similarity=-0.019 Sum_probs=145.8
Q ss_pred eEEEEEccCcc-eeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCE
Q 001248 754 ISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 832 (1114)
Q Consensus 754 i~~l~~s~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~ 832 (1114)
..+..|+|++. .+++...++.|..|+... +..... . ....+.+++++++|++
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~----------------------~~~~~~--~---~~~~v~~i~~~~dg~l 103 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLAS----------------------GRKTVH--A---LPFMGSALAKISDSKQ 103 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTT----------------------TEEEEE--E---CSSCEEEEEEEETTEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCC----------------------CcEEEE--E---CCCcceEEEEeCCCeE
Confidence 45678899754 455555678888877542 221111 0 2346889999999988
Q ss_pred EEEEeCCeEEEEEcCCCccccccCC----CCCCeEEEEEecCCCcEEEEEeC------CCcEEEEEcccceEEEeecccc
Q 001248 833 VMSASGGKISLFNMMTFKTMATFMP----PPPAATFLAFHPQDNNIIAIGMD------DSSIQIYNVRVDEVKSKLKGHS 902 (1114)
Q Consensus 833 l~~~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~l~~sp~d~~~la~g~~------dg~v~iwd~~~~~~~~~l~~h~ 902 (1114)
+++. ++.|.+||..+++....... ....+..++++| +|+++++... .+.|+.++ +++.. .+..+.
T Consensus 104 ~v~~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~ 178 (326)
T 2ghs_A 104 LIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADI 178 (326)
T ss_dssp EEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEE
T ss_pred EEEE-CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCC
Confidence 7765 45599999987765322211 123588999999 8887665432 24566666 55543 333344
Q ss_pred cCeeEEEEcCCCCEEEEE-eCCCcEEEEeCC--CC-ccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCeEEE
Q 001248 903 KRITGLAFSHALNVLVSS-GADSQLCVWSSD--GW-EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAI 977 (1114)
Q Consensus 903 ~~V~~l~~s~d~~~l~s~-s~D~~v~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~i~i 977 (1114)
...++++|+||++.|+.+ +.++.|.+|+++ ++ .............. ...+..+++.++|.+.++. .++.|.+
T Consensus 179 ~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~---~~~p~gi~~d~~G~lwva~~~~~~v~~ 255 (326)
T 2ghs_A 179 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGI---KGGMDGSVCDAEGHIWNARWGEGAVDR 255 (326)
T ss_dssp SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTS---SSEEEEEEECTTSCEEEEEETTTEEEE
T ss_pred cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCC---CCCCCeeEECCCCCEEEEEeCCCEEEE
Confidence 557899999999877554 557889999986 44 32111111111111 1245789999999877774 5688999
Q ss_pred EEcCCCceeeeeecCCCCcCeeEEEEC-CCCCEEEEEEcC
Q 001248 978 FETTKLECVKQWVPRESSAPITHATFS-CDSQLVYACFLD 1016 (1114)
Q Consensus 978 wd~~~~~~~~~~~~~~h~~~v~~l~~s-~dg~~l~s~s~D 1016 (1114)
||. +++.+..+.. +...+++++|+ +|++.|++++..
T Consensus 256 ~d~-~g~~~~~i~~--~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 256 YDT-DGNHIARYEV--PGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp ECT-TCCEEEEEEC--SCSBEEEEEEESTTSCEEEEEEBC
T ss_pred ECC-CCCEEEEEEC--CCCCcEEEEEecCCCCEEEEEecC
Confidence 998 5776666653 34579999998 898887666544
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.12 E-value=6.5e-09 Score=112.89 Aligned_cols=229 Identities=12% Similarity=0.042 Sum_probs=151.5
Q ss_pred ccceEEEEEccCcc-eeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeC
Q 001248 751 ATKISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1114)
Q Consensus 751 ~~~i~~l~~s~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d 829 (1114)
........|+++|+ .+++...++.|..|+.. +.... +.. +...+..++++++
T Consensus 44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-----------------------g~~~~--~~~--~~~~~~gl~~d~d 96 (305)
T 3dr2_A 44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-----------------------GTVDV--LLD--ATAFTNGNAVDAQ 96 (305)
T ss_dssp CSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-----------------------SCEEE--EEE--SCSCEEEEEECTT
T ss_pred CcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-----------------------CCEEE--EeC--CCCccceeeECCC
Confidence 34567889999998 45566667888888642 11100 000 3455788999999
Q ss_pred CCEEEEEe-CCeEEEEEcCCCcccccc---CC-CCCCeEEEEEecCCCcEEEE----EeC-------------CCcEEEE
Q 001248 830 DSYVMSAS-GGKISLFNMMTFKTMATF---MP-PPPAATFLAFHPQDNNIIAI----GMD-------------DSSIQIY 887 (1114)
Q Consensus 830 ~~~l~~~~-dg~i~iwd~~~~~~~~~~---~~-~~~~i~~l~~sp~d~~~la~----g~~-------------dg~v~iw 887 (1114)
|+++++.. ++.|.+|+.. ++..... .+ ....+..++++| +|+++++ |.. .+.|+.|
T Consensus 97 G~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~ 174 (305)
T 3dr2_A 97 QRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRL 174 (305)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEE
T ss_pred CCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEE
Confidence 99777665 5789999985 4432211 11 113467899999 8888886 432 3568888
Q ss_pred EcccceEEEeecccccCeeEEEEcCCCCEEEEEeCC------CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEc
Q 001248 888 NVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH 961 (1114)
Q Consensus 888 d~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fs 961 (1114)
|..+++..... .....+.++|+||++.|+.+... +.|.+|++............... ......+++.
T Consensus 175 d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~-----~~~pdgi~~d 247 (305)
T 3dr2_A 175 PPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVP-----DGLPDGFCVD 247 (305)
T ss_dssp CSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCS-----SSCCCSEEEC
T ss_pred cCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECC-----CCCCCeEEEC
Confidence 87777654433 44567899999999988877665 68999998764311111111111 1245678999
Q ss_pred cCCcEEEEEeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEE
Q 001248 962 QDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVC 1020 (1114)
Q Consensus 962 pdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~ 1020 (1114)
++|++.++. .+.|.+|+. +++.+..+... ..+.+++|+++++.|+.++.++..+
T Consensus 248 ~~G~lwv~~-~~gv~~~~~-~g~~~~~~~~~---~~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 248 RGGWLWSSS-GTGVCVFDS-DGQLLGHIPTP---GTASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp TTSCEEECC-SSEEEEECT-TSCEEEEEECS---SCCCEEEECTTSCEEEEEETTEEEE
T ss_pred CCCCEEEec-CCcEEEECC-CCCEEEEEECC---CceeEEEEeCCCCEEEEEcCCeEEE
Confidence 999955555 456999998 56666666532 2589999999999998888764333
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.2e-08 Score=123.29 Aligned_cols=404 Identities=12% Similarity=0.046 Sum_probs=209.8
Q ss_pred CCeEEEEeCCCeEEEEEccCCceeeeeEeeccccC----------Ce-eEEEecCCCCeeEEEEecCCCCEEEEeCCCCc
Q 001248 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVG----------GV-NDIAFSHPNKQLCVITCGDDKTIKVWDATNGA 500 (1114)
Q Consensus 432 g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~----------~V-~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 500 (1114)
+..|.+++.++.|.-+|..+|+.+-.. ..+.. .+ ..++. ++. .++.++.|+.|..+|.++|+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~---~~~~~~~~~~~~~~~~~~~~~~~--~~g--~v~v~~~dg~l~AlDa~TG~ 142 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKY---DPQSDRHRAGEACCDAVNRGVAV--WKG--KVYVGVLDGRLEAIDAKTGQ 142 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEE---CCCCCGGGGGGCTTCSCCCCCEE--ETT--EEEEECTTSEEEEEETTTCC
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEE---cCCCCccccccccccCCCCccEE--ECC--EEEEEccCCEEEEEECCCCC
Confidence 566777778889999999999876532 21111 01 11222 244 47788889999999999999
Q ss_pred ceeEeecc--ccCEEEEeeccC-CCceEEEEEe------cCCeEEEEEcCCCCCeeeecCCC-CeeEE-----EEEec--
Q 001248 501 KQYIFEGH--EAPVYSVCPHHK-ENIQFIFSTA------LDGKIKAWLYDNLGSRVDYEAPG-RWCTT-----MAYSA-- 563 (1114)
Q Consensus 501 ~~~~~~~h--~~~v~~~~~~~~-~~~~~l~s~~------~d~~i~~wd~~~~~~~~~~~~~~-~~v~~-----~~~s~-- 563 (1114)
.+..+... ......+...+. .++ .++.++ .++.|..||..+++.+..+.... ..... +....
T Consensus 143 ~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~ 221 (689)
T 1yiq_A 143 RAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKT 221 (689)
T ss_dssp EEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTT
T ss_pred EeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccc
Confidence 98777542 111111111110 133 444443 37899999999988877654211 00000 00000
Q ss_pred -CCC-eEEeeecccceeEEEecCCCCEEEEEeCCCe-------------------EEEEECCCcceEEEeccCCCC----
Q 001248 564 -DGT-RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS-------------------IKFWDMDSVQLLTSIDADGGL---- 618 (1114)
Q Consensus 564 -~g~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~---- 618 (1114)
.+. .............+.++++.+.++.+..++. |..||..+|+.+..+....+.
T Consensus 222 ~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~ 301 (689)
T 1yiq_A 222 WFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDY 301 (689)
T ss_dssp CCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCC
T ss_pred cCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccc
Confidence 000 0000011112234677888888888877763 999999999999888643221
Q ss_pred ---CCcCeEEEcCCCC---EEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccc
Q 001248 619 ---PASPRIRFNKDGC---LLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLA 692 (1114)
Q Consensus 619 ---~~v~~~~~s~d~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1114)
..........+|+ .++.++.+|.++++|..+|+.....-........ .+...
T Consensus 302 ~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~--------~~~~~-------------- 359 (689)
T 1yiq_A 302 TATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTK--------GMDMK-------------- 359 (689)
T ss_dssp CCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE--------EEETT--------------
T ss_pred cCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccccccccccc--------ccCcc--------------
Confidence 0111112222565 7889999999999999999443221100000000 00000
Q ss_pred cccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccC
Q 001248 693 DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN 772 (1114)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d 772 (1114)
.+..+.... . .|.... ....+..|.......-..++|+|+...+++...+
T Consensus 360 --------------------~~~pi~~~~----~-~~~~~~-----~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~ 409 (689)
T 1yiq_A 360 --------------------TGRPILDEE----N-AAYWKN-----GKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHI 409 (689)
T ss_dssp --------------------TTEEEECHH----H-HCTTTS-----SSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEE
T ss_pred --------------------CCCcccchh----h-ccccCC-----CCeeEeCCCcccccCCCcceECCCCCEEEEeccc
Confidence 000000000 0 000000 0000111111112233458899988888877766
Q ss_pred ceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeC---CCEEEEEe-CCeEEEEEcCC
Q 001248 773 AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN---DSYVMSAS-GGKISLFNMMT 848 (1114)
Q Consensus 773 g~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d---~~~l~~~~-dg~i~iwd~~~ 848 (1114)
....++...... .|....+.. ... .. +...|. +....... +|.|..||+.+
T Consensus 410 ~~~~~~~~~~~~--------------~~~~~~~~~---------~~g-~~-~~~~p~~~~~~~~~~~~~~g~l~A~D~~t 464 (689)
T 1yiq_A 410 MSAYYEHIPEAP--------------KRNPFKSMY---------QLG-LR-TGMMPEGAEGLLEMAKSWSGKLIAWDPVK 464 (689)
T ss_dssp CCEEEECCSSCC--------------CCCSCTTSC---------CCS-SE-ECCCCSSHHHHHHHHTTCEEEEEEEETTT
T ss_pred cceeeeeccccc--------------ccccccccc---------ccC-cc-ccccCcccccCCCCCCCcceeEEEEECCC
Confidence 544443221000 011000000 000 00 000000 00000001 47899999999
Q ss_pred CccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccC-eeEEEEcCCCCEE-EEEeC
Q 001248 849 FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFSHALNVL-VSSGA 922 (1114)
Q Consensus 849 ~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~s~d~~~l-~s~s~ 922 (1114)
++.+..+..+.. ...-.++. .+.++++|+.||.|+.||..+|+.+.+++...+. ..-+.|+.||+.. ++.+.
T Consensus 465 G~~~W~~~~~~~-~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G 538 (689)
T 1yiq_A 465 QQAAWEVPYVTI-FNGGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMAG 538 (689)
T ss_dssp TEEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred CCeEeEccCCCC-ccCccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEec
Confidence 998877654432 33335555 6778899999999999999999999888754332 3557788888754 44433
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=5.7e-09 Score=114.35 Aligned_cols=252 Identities=11% Similarity=-0.013 Sum_probs=154.1
Q ss_pred CCCeEEEEEecCC----cEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEe-----
Q 001248 369 VQQTLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY----- 439 (1114)
Q Consensus 369 dg~~ll~tg~~dg----~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~----- 439 (1114)
+..+++++...++ +|.+.|..+++.+.... .+. .+ .+++||||+++.++.
T Consensus 30 ~~~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~------------------vG~-~P--~i~~spDg~~lyVan~~~~r 88 (368)
T 1mda_H 30 ISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSL------------------GAF-LS--LAVAGHSGSDFALASTSFAR 88 (368)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEE------------------ECT-TC--EEEECTTSSCEEEEEEEETT
T ss_pred CCCeEEEECCccCCccceEEEEECCCCeEEEEEe------------------CCC-CC--ceEECCCCCEEEEEcccccc
Confidence 3344566666555 88899999999887422 222 24 799999999999886
Q ss_pred -----CCCeEEEEEccCCceeeeeEeeccc-----cCCeeEEEecCCCCeeEEEEecCCCCEEE--EeCCCCcceeEeec
Q 001248 440 -----SRHIVQIYSYHGGDEVRQHLEIDAH-----VGGVNDIAFSHPNKQLCVITCGDDKTIKV--WDATNGAKQYIFEG 507 (1114)
Q Consensus 440 -----~dg~i~iwd~~~~~~~~~~~~l~~h-----~~~V~~v~~s~d~~~~~l~s~~~d~~i~i--wd~~~~~~~~~~~~ 507 (1114)
.++.|.+||..+++.+..+. +.+. ......++|+|||++++++..+.+..|.+ +|+.+ +.++..
T Consensus 89 ~~~G~~~~~VsviD~~T~~vv~~I~-v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v 164 (368)
T 1mda_H 89 SAKGKRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKS 164 (368)
T ss_dssp TTSSSEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEEC
T ss_pred cccCCCCCEEEEEECCCCCEEEEEE-CCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEEC
Confidence 36889999999998776432 2210 12356899999999633222233567888 99877 444431
Q ss_pred cccCEEEEeeccCCCceEEEEEecCCeEEEEEcCC----CCCee-----eecCCCCeeEEEEEecCCCeE-Eee------
Q 001248 508 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN----LGSRV-----DYEAPGRWCTTMAYSADGTRT-YQG------ 571 (1114)
Q Consensus 508 h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~----~~~~~-----~~~~~~~~v~~~~~s~~g~~~-~~~------ 571 (1114)
- +. ..+.+... ..+++.+.|+.+.+.|+.+ ..... .+.....+. . .+++... +..
T Consensus 165 ~-~~---~~~~p~g~-~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~~~V~v 235 (368)
T 1mda_H 165 A-SC---FHIHPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVASSILQ 235 (368)
T ss_dssp S-SC---CCCEEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBSSCCEE
T ss_pred C-Cc---eEEccCCC-eEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcCCEEEE
Confidence 1 11 11222222 2445556677777777765 11111 000001111 1 2221111 000
Q ss_pred -------------------------ecccceeEEEecCCCCEEEEEeC---------CCeEEEEECCCcceEEEeccCCC
Q 001248 572 -------------------------FRKRSLGVVQFDTTKNRFLAAGD---------DFSIKFWDMDSVQLLTSIDADGG 617 (1114)
Q Consensus 572 -------------------------~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~ 617 (1114)
........+.+++++++++.+.. ++.+.++|..+++.+..+....
T Consensus 236 iD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~- 314 (368)
T 1mda_H 236 GDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH- 314 (368)
T ss_dssp EECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-
T ss_pred EECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-
Confidence 00111122678999988887543 2456699999999998887543
Q ss_pred CCCcCeEEEcCCCC-EEEEEe-CCCcEEEEEccCCccceeecc
Q 001248 618 LPASPRIRFNKDGC-LLAVST-NDNGIKILATSDGIRLLRTFE 658 (1114)
Q Consensus 618 ~~~v~~~~~s~d~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~ 658 (1114)
....++|+|||+ ++++.. .++.|.++|+.++ +.++.+.
T Consensus 315 --~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~-kvv~~I~ 354 (368)
T 1mda_H 315 --DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSVE 354 (368)
T ss_dssp --EECEEEECCSSSCEEEEEETTTTEEEEEESSSC-EEEEECC
T ss_pred --CcceEEECCCCCEEEEEccCCCCeEEEEECCCC-cEEEEEE
Confidence 368899999998 556666 5899999999998 5566554
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.3e-08 Score=108.01 Aligned_cols=233 Identities=11% Similarity=0.117 Sum_probs=149.0
Q ss_pred EEe--eCCCEEEEEe--CCeEEEEEcCCC----ccccccC-------CCCCCeEEEEEecCCCcEEEEEeCC------Cc
Q 001248 825 ALS--KNDSYVMSAS--GGKISLFNMMTF----KTMATFM-------PPPPAATFLAFHPQDNNIIAIGMDD------SS 883 (1114)
Q Consensus 825 ~~s--~d~~~l~~~~--dg~i~iwd~~~~----~~~~~~~-------~~~~~i~~l~~sp~d~~~la~g~~d------g~ 883 (1114)
.++ .++++|++.+ +++|.++|+.+. +..+++. ........+..+| +| +++++..+ |.
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~ 165 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGG 165 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCe
Confidence 346 8899988887 789999999754 3334342 1112456678889 77 66666555 78
Q ss_pred EEEEEcccceEEEeeccccc---CeeEEEEcCCCCEEEEEe-------------------CCCcEEEEeCCCCccccccc
Q 001248 884 IQIYNVRVDEVKSKLKGHSK---RITGLAFSHALNVLVSSG-------------------ADSQLCVWSSDGWEKQKNRF 941 (1114)
Q Consensus 884 v~iwd~~~~~~~~~l~~h~~---~V~~l~~s~d~~~l~s~s-------------------~D~~v~iwd~~~~~~~~~~~ 941 (1114)
|.++|..+++.+.++..-.. --..+.|+|+++.+++.. .+.+|.+||+.+++....
T Consensus 166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~t-- 243 (462)
T 2ece_A 166 ILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHS-- 243 (462)
T ss_dssp EEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEE--
T ss_pred EEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeE--
Confidence 99999999999988863222 234688999999999885 368899999998543221
Q ss_pred cccCCCCCCCCCCceEEEE--ccCCcEEEEE-------eCCeEEEEEcCCCcee--eeeecCC----------------C
Q 001248 942 LQIPTGRTPTAQSDTRVQF--HQDQIHFLVV-------HETQLAIFETTKLECV--KQWVPRE----------------S 994 (1114)
Q Consensus 942 ~~~~~~~~~~~~~i~~v~f--spdg~~l~~~-------~d~~i~iwd~~~~~~~--~~~~~~~----------------h 994 (1114)
+...... .....+.| +|+|+++.++ .+++|.+|....++.. ..+.... -
T Consensus 244 I~vg~~g----~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~ 319 (462)
T 2ece_A 244 LTLGEEN----RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAV 319 (462)
T ss_dssp EESCTTE----EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEE
T ss_pred EecCCCC----CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccC
Confidence 2221000 12345555 9999998873 3457777665543211 1110000 0
Q ss_pred CcCeeEEEECCCCCEEEEEEc-CCeEEEEEcC---CCeeeEEeCCCccc-----CCCCCCCCccceEEEecCCCCCeEEE
Q 001248 995 SAPITHATFSCDSQLVYACFL-DATVCVFSAA---NLKLRCRINPSAYL-----PAGVSSSNVHPLVIAAHPQEPNEFAL 1065 (1114)
Q Consensus 995 ~~~v~~l~~s~dg~~l~s~s~-Dg~I~vwd~~---~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~d~~~l~s 1065 (1114)
...+..|.+|+||++|++++. .+.|.+||+. +.+++.++...... +.|. .....|-.+.++| ||++|++
T Consensus 320 ~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~-~~~ggPr~~~lSp-DGk~LyV 397 (462)
T 2ece_A 320 PPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGH-KLTGAPQMLEISR-DGRRVYV 397 (462)
T ss_dssp CCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSC-CCCSCCCCEEECT-TSSEEEE
T ss_pred CCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccc-cCCCCCCEEEEcC-CCCEEEE
Confidence 245789999999999988875 5789999986 34566655422100 0010 0001345788999 6888888
Q ss_pred Ee
Q 001248 1066 GL 1067 (1114)
Q Consensus 1066 ~~ 1067 (1114)
+.
T Consensus 398 aN 399 (462)
T 2ece_A 398 TN 399 (462)
T ss_dssp EC
T ss_pred Ec
Confidence 87
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.06 E-value=1.5e-07 Score=105.67 Aligned_cols=208 Identities=9% Similarity=0.004 Sum_probs=126.2
Q ss_pred CCeEEEEEcCCCccccccCCCCCCe-----EEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeeccccc-------C-
Q 001248 838 GGKISLFNMMTFKTMATFMPPPPAA-----TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK-------R- 904 (1114)
Q Consensus 838 dg~i~iwd~~~~~~~~~~~~~~~~i-----~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~-------~- 904 (1114)
++.|..+|..+++.+.......... ...... + ..+++++.+|.|..+|..+|+.+........ .
T Consensus 152 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~-~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~ 228 (376)
T 3q7m_A 152 NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--F-GAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRL 228 (376)
T ss_dssp TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--T-TEEEECCTTTEEEEEETTTCCEEEEEECCC----------
T ss_pred CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--C-CEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccc
Confidence 6667777776666655443221110 122222 2 3577788899999999999988766543211 0
Q ss_pred --e-eEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcC
Q 001248 905 --I-TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETT 981 (1114)
Q Consensus 905 --V-~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~ 981 (1114)
+ ..... .+..++.++.++.+..+|..+++..-... . .....+.. .++..++.+.++.+..+|..
T Consensus 229 ~~~~~~p~~--~~~~v~~~~~~g~l~~~d~~tG~~~w~~~---~-------~~~~~~~~-~~~~l~~~~~~g~l~~~d~~ 295 (376)
T 3q7m_A 229 SDVDTTPVV--VNGVVFALAYNGNLTALDLRSGQIMWKRE---L-------GSVNDFIV-DGNRIYLVDQNDRVMALTID 295 (376)
T ss_dssp -CCCCCCEE--ETTEEEEECTTSCEEEEETTTCCEEEEEC---C-------CCEEEEEE-ETTEEEEEETTCCEEEEETT
T ss_pred cccCCCcEE--ECCEEEEEecCcEEEEEECCCCcEEeecc---C-------CCCCCceE-ECCEEEEEcCCCeEEEEECC
Confidence 1 11111 24677788889999999998876432111 0 11233333 24444444678899999999
Q ss_pred CCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCC
Q 001248 982 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN 1061 (1114)
Q Consensus 982 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~ 1061 (1114)
+++......... ...+..... .+..|++++.+|.|+++|..+|+.+.+.... .+ . +.. .... .+.
T Consensus 296 tG~~~w~~~~~~-~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~----~~---~-~~~-~~~~---~~~ 360 (376)
T 3q7m_A 296 GGVTLWTQSDLL-HRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVD----SS---G-FQT-EPVA---ADG 360 (376)
T ss_dssp TCCEEEEECTTT-TSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECC----TT---C-BCS-CCEE---ETT
T ss_pred CCcEEEeecccC-CCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecC----CC---c-cee-CCEE---ECC
Confidence 998765543111 222333333 3567888999999999999999998876621 11 1 110 1111 146
Q ss_pred eEEEEeCCCcEEEEe
Q 001248 1062 EFALGLSDGGVHVFE 1076 (1114)
Q Consensus 1062 ~l~s~~~Dg~v~vW~ 1076 (1114)
.|++++.||.|+.|+
T Consensus 361 ~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 361 KLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEEEEBTTSCEEEEE
T ss_pred EEEEEeCCCEEEEEe
Confidence 788899999999987
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.06 E-value=7.8e-09 Score=113.89 Aligned_cols=180 Identities=14% Similarity=0.169 Sum_probs=109.9
Q ss_pred EEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEe
Q 001248 426 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 505 (1114)
Q Consensus 426 l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 505 (1114)
+.+..+|. |..++.++.|..|| .+++... ....+...+.++...++|. +..++.+ |..+|. +++.+..+
T Consensus 25 ~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~---~~~~~~~~~~~~~~~~~g~---l~v~t~~--l~~~d~-~g~~~~~~ 93 (330)
T 3hxj_A 25 PILAKNGT-IYLGSSNKNLYAIN-TDGSVKW---FFKSGEIIECRPSIGKDGT---IYFGSDK--VYAINP-DGTEKWRF 93 (330)
T ss_dssp CEECTTSC-EECSSTTTTTEEEC-TTSCEEE---SSCGGGEEEECCEETTTTE---ECCSSCE--EEEECC-CGGGGGGS
T ss_pred ceEccCCe-EEEEcCCCEEEEEC-CCCcEEE---EEecCCCcccceEEecCCc---EEEecCc--EEEECC-CCcEEEEE
Confidence 44545554 55566778899999 7777544 2333444567788877776 4555555 889995 77766555
Q ss_pred eccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCC
Q 001248 506 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 585 (1114)
Q Consensus 506 ~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~ 585 (1114)
...........+. + ..++.++.++.|..+|.. +............+.++...+++.
T Consensus 94 ~~~~~~~~~~~~~---~-~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~------------------- 149 (330)
T 3hxj_A 94 DTKKAIVSDFTIF---E-DILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT------------------- 149 (330)
T ss_dssp CC-----CCEEEE---T-TEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-------------------
T ss_pred ECCCCcccCceEE---C-CEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-------------------
Confidence 4333222222322 2 467778888999999887 554444443333333333333333
Q ss_pred CCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 586 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 586 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
+..++.++.|..||.. ++.+..+.... ..+.++.+.+++.+++. + +.+..+| .++
T Consensus 150 ---l~vgt~~~~l~~~d~~-g~~~~~~~~~~--~~~~~~~~d~~g~l~v~-t--~~l~~~d-~~g 204 (330)
T 3hxj_A 150 ---IYVGSNDNYLYAINPD-GTEKWRFKTND--AITSAASIGKDGTIYFG-S--DKVYAIN-PDG 204 (330)
T ss_dssp ---EEEECTTSEEEEECTT-SCEEEEEECSS--CCCSCCEECTTCCEEEE-S--SSEEEEC-TTS
T ss_pred ---EEEEcCCCEEEEECCC-CCEeEEEecCC--CceeeeEEcCCCEEEEE-e--CEEEEEC-CCC
Confidence 6778888999999998 87776665442 34667777777775544 3 6777777 444
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.02 E-value=8.1e-08 Score=105.02 Aligned_cols=248 Identities=13% Similarity=0.169 Sum_probs=153.2
Q ss_pred EEc--CCCCeEEEEEecCCcEEEEEcCCc----ceeEEeeeeeeccCCCCcccccccccCCC-CCeeEEEEcCCCCeEEE
Q 001248 365 DFH--PVQQTLLLVGTNVGDIGLWEVGSR----ERLVLRNFKVWDLGACSMPLQAALVKDPG-VSVNRVIWSPDGSLFGV 437 (1114)
Q Consensus 365 ~~s--pdg~~ll~tg~~dg~v~iwd~~~~----~~~~~~~~~~~d~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~las 437 (1114)
.++ +++++|+++|..+++|.|+|+.+. +.... +. ...+..... ..-..+..+||| ++++
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~--ie-----------~~~~~~~~g~s~Ph~~~~~pdG-i~Vs 153 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKV--IE-----------PEEVKKVSGYSRLHTVHCGPDA-IYIS 153 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEE--EC-----------HHHHHHHHCEEEEEEEEECSSC-EEEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeee--ec-----------hhhcccccCCCcccceeECCCe-EEEE
Confidence 447 899999999999999999999754 22211 10 000110111 134567888999 6666
Q ss_pred EeCC------CeEEEEEccCCceeeeeEeecccc-CCeeEEEecCCCCeeEEEEec-------------------CCCCE
Q 001248 438 AYSR------HIVQIYSYHGGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITCG-------------------DDKTI 491 (1114)
Q Consensus 438 ~~~d------g~i~iwd~~~~~~~~~~~~l~~h~-~~V~~v~~s~d~~~~~l~s~~-------------------~d~~i 491 (1114)
+..+ +.|.+.|..+++.+.... ..+.. .--+.+.|+|+++ .+++.. .+.+|
T Consensus 154 ~~g~~~g~~~g~v~vlD~~T~~v~~~~~-~~~~~~~~~Yd~~~~p~~~--~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V 230 (462)
T 2ece_A 154 ALGNEEGEGPGGILMLDHYSFEPLGKWE-IDRGDQYLAYDFWWNLPNE--VLVSSEWAVPNTIEDGLKLEHLKDRYGNRI 230 (462)
T ss_dssp EEEETTSCSCCEEEEECTTTCCEEEECC-SBCTTCCCCCCEEEETTTT--EEEECBCCCHHHHTTCCCTTTHHHHSCCEE
T ss_pred cCCCcCCCCCCeEEEEECCCCeEEEEEc-cCCCCccccceEEECCCCC--EEEEccCcCccccccccchhhhhhccCCEE
Confidence 5444 789999999988776332 22222 2234688999999 566663 36789
Q ss_pred EEEeCCCCcceeEeecc--ccCEEEEeeccCCCceEEEEEe------cCCeEEEEEcCCCCCeeeecCCCCeeEEEEEec
Q 001248 492 KVWDATNGAKQYIFEGH--EAPVYSVCPHHKENIQFIFSTA------LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA 563 (1114)
Q Consensus 492 ~iwd~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~l~s~~------~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~ 563 (1114)
.+||+.+++.+.++..- ......+.|.+++++++++.++ .+++|.+|..+.+. ... ...+.+.+
T Consensus 231 ~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~-~~~-------~~vIdi~~ 302 (462)
T 2ece_A 231 HFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK-WNA-------EKVIEIPA 302 (462)
T ss_dssp EEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE-EEE-------EEEEEECC
T ss_pred EEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc-eeE-------EEEEeCCC
Confidence 99999999888887642 1334556666677888877776 56788888775421 100 01111111
Q ss_pred CC-CeEE----eee--cccceeEEEecCCCCEEEEEe-CCCeEEEEECCC---cceEEEeccCCCC------------CC
Q 001248 564 DG-TRTY----QGF--RKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDS---VQLLTSIDADGGL------------PA 620 (1114)
Q Consensus 564 ~g-~~~~----~~~--~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~---~~~~~~~~~~~~~------------~~ 620 (1114)
.. ...+ .+. .......+.+++++++|+++. ..+.|.+||+.. .+.+..+...+.. ..
T Consensus 303 ~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~gg 382 (462)
T 2ece_A 303 EPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGA 382 (462)
T ss_dssp EECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSC
T ss_pred ccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCC
Confidence 00 0000 000 012345577788887887766 578999999853 3555555443210 12
Q ss_pred cCeEEEcCCCCEEEEEe
Q 001248 621 SPRIRFNKDGCLLAVST 637 (1114)
Q Consensus 621 v~~~~~s~d~~~l~~~~ 637 (1114)
-..++++|||++|+++.
T Consensus 383 Pr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 383 PQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCEEECTTSSEEEEEC
T ss_pred CCEEEEcCCCCEEEEEc
Confidence 47899999999999987
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.01 E-value=2.5e-08 Score=113.08 Aligned_cols=240 Identities=12% Similarity=0.085 Sum_probs=162.5
Q ss_pred EEEee-----CCCEEEEEe--CCeEEEEEcCCCccccccCC-CCCCeEEEEE-e-cCCCcEEEEEe--------------
Q 001248 824 FALSK-----NDSYVMSAS--GGKISLFNMMTFKTMATFMP-PPPAATFLAF-H-PQDNNIIAIGM-------------- 879 (1114)
Q Consensus 824 v~~s~-----d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~-s-p~d~~~la~g~-------------- 879 (1114)
..+|. ||+++.+.. ++.|.+.|+.+.++...+.. ....+..+++ + | ++.++.+++
T Consensus 90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~ 168 (595)
T 1fwx_A 90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNME 168 (595)
T ss_dssp EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTT
T ss_pred cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccc
Confidence 56665 999999887 57899999999998774432 2245788887 5 8 777777774
Q ss_pred ----CCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCC-------------------------------
Q 001248 880 ----DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS------------------------------- 924 (1114)
Q Consensus 880 ----~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~------------------------------- 924 (1114)
.++.+.+.|..+.+.+.++.--. .-..++++|||+++++++.+.
T Consensus 169 ~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~ 247 (595)
T 1fwx_A 169 DVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA 247 (595)
T ss_dssp CGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred cccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccC
Confidence 34589999999998887775322 346788999999999988653
Q ss_pred -------cEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE--eCCeEEEEEcCCCc-----------
Q 001248 925 -------QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLE----------- 984 (1114)
Q Consensus 925 -------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~--~d~~i~iwd~~~~~----------- 984 (1114)
.|.|.|..+.+... ....+..+ ....++.++|||++++++ .+.+|.++|+.+.+
T Consensus 248 Gk~~~i~~V~VID~~~~~~~~-~~~~Ipvg-----~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~ 321 (595)
T 1fwx_A 248 GDYQELNGVKVVDGRKEASSL-FTRYIPIA-----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRS 321 (595)
T ss_dssp TCSEEETTEEEEECSGGGCCS-SEEEEEEE-----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGG
T ss_pred CCeeEECcEEEEeCcccCCce-eEEEEecC-----CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCccc
Confidence 35555555411000 00011111 134789999999999985 67789999999763
Q ss_pred -eeeeeecCCCCcCeeEEEECCCCCEEE-EEEcCCeEEEEEcCC----------CeeeEEeCCCcccCCCCCCCCccceE
Q 001248 985 -CVKQWVPRESSAPITHATFSCDSQLVY-ACFLDATVCVFSAAN----------LKLRCRINPSAYLPAGVSSSNVHPLV 1052 (1114)
Q Consensus 985 -~~~~~~~~~h~~~v~~l~~s~dg~~l~-s~s~Dg~I~vwd~~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~ 1052 (1114)
....... ......++|+||| +++ +...|+.|.+||+++ ...+.++..+ +.| ||. -..+.
T Consensus 322 ~v~~~v~v---G~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~-yqp-Gh~---~~~~g 392 (595)
T 1fwx_A 322 AVVAEPEL---GLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH-YQP-GHL---KTVMG 392 (595)
T ss_dssp GEEECCBC---CSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS-SCE-EEE---EETTT
T ss_pred ceEEEcCC---CCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecc-ccc-ccc---eeccc
Confidence 2233322 4578999999999 554 555789999999987 5566666632 222 110 11123
Q ss_pred EEecCCCCCeEEEEeCCC--cE-----------EEEeccCCC
Q 001248 1053 IAAHPQEPNEFALGLSDG--GV-----------HVFEPLESE 1081 (1114)
Q Consensus 1053 ~~~~~~d~~~l~s~~~Dg--~v-----------~vW~i~~~~ 1081 (1114)
++.+| ||++|++...-. .+ .++||+.++
T Consensus 393 ~t~~~-DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 393 ETLDA-TNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp TSTTC-CSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred eEeCC-CCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 45667 789998876422 22 889997777
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=0.00012 Score=86.73 Aligned_cols=508 Identities=7% Similarity=-0.063 Sum_probs=262.2
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
.-..+.+++|++++.++..+-..++.|..++++...... ++.........||+.+.+..|.
T Consensus 35 ~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~-------------------v~~~g~~~P~GlAvD~~~~~LY 95 (628)
T 4a0p_A 35 GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEH-------------------VVEFGLDYPEGMAVDWLGKNLY 95 (628)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-------------------EECSSCSCCCEEEEETTTTEEE
T ss_pred CCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEE-------------------EEeCCCCCcceEEEEeCCCEEE
Confidence 335688999999888777777778899999987653322 1111123567899988666555
Q ss_pred EE-eCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEE
Q 001248 437 VA-YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 515 (1114)
Q Consensus 437 s~-~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 515 (1114)
.+ ...+.|.+.+++...... .+...-.....|++.|....+++.--+..+.|...++.... ...+...-.....+
T Consensus 96 ~tD~~~~~I~v~~~dG~~~~~---l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~l~~~~~~P~Gl 171 (628)
T 4a0p_A 96 WADTGTNRIEVSKLDGQHRQV---LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RTTLVPNVGRANGL 171 (628)
T ss_dssp EEETTTTEEEEEETTSTTCEE---EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEECSCSSEEEE
T ss_pred EEECCCCEEEEEecCCCcEEE---EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eEEEECCCCCcceE
Confidence 44 456789999987654221 12233345789999997665333322445678888865433 34433344567788
Q ss_pred eeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCC
Q 001248 516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 595 (1114)
Q Consensus 516 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 595 (1114)
++.+.. +.+.++-...+.|...|++..... .+.........+++ .. +..+++-...
T Consensus 172 alD~~~-~~LY~aD~~~~~I~~~d~dG~~~~-v~~~~l~~P~glav---------------------~~-~~ly~tD~~~ 227 (628)
T 4a0p_A 172 TIDYAK-RRLYWTDLDTNLIESSNMLGLNRE-VIADDLPHPFGLTQ---------------------YQ-DYIYWTDWSR 227 (628)
T ss_dssp EEETTT-TEEEEEETTTTEEEEEETTSCSCE-EEEECCSCEEEEEE---------------------ET-TEEEEEETTT
T ss_pred EEcccc-CEEEEEECCCCEEEEEcCCCCceE-EeeccCCCceEEEE---------------------EC-CEEEEecCCC
Confidence 876543 245555566778888888653332 11111112222322 22 2233444457
Q ss_pred CeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCc
Q 001248 596 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTI 675 (1114)
Q Consensus 596 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (1114)
+.|...|..+++....+.... .....+........- +. + .+.. -.+... .. ++
T Consensus 228 ~~I~~~dk~tg~~~~~l~~~~--~~p~~i~v~~~~~q~--~~--------n-----~C~~-~ng~C~--------~~-C~ 280 (628)
T 4a0p_A 228 RSIERANKTSGQNRTIIQGHL--DYVMDILVFHSSRQS--GW--------N-----ECAS-SNGHCS--------HL-CL 280 (628)
T ss_dssp TEEEEEETTTCCSCEEEECSC--CSCCEEEEECGGGSC--CC--------C-----TTTT-TGGGCS--------SE-EE
T ss_pred CEEEEEECCCCCceEEEecCC--CCcceeeeeeecccc--cc--------e-----Eecc-CCCCcc--------hh-hh
Confidence 888888877776655554221 112222221110000 00 0 0000 000000 00 00
Q ss_pred cchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceE
Q 001248 676 SPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKIS 755 (1114)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~ 755 (1114)
.. +.+.+ .+.+..|. .+.. ...+
T Consensus 281 ~~----------------------------------~~~~~-~C~C~~g~----~l~~------------------d~~~ 303 (628)
T 4a0p_A 281 AV----------------------------------PVGGF-VCGCPAHY----SLNA------------------DNRT 303 (628)
T ss_dssp EE----------------------------------TTTEE-EEECSTTC----EECT------------------TSSC
T ss_pred cC----------------------------------CCCCe-eEEcCCCc----Eecc------------------cCCc
Confidence 00 00000 00000000 0000 0000
Q ss_pred EEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEE
Q 001248 756 RLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMS 835 (1114)
Q Consensus 756 ~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~ 835 (1114)
+. .+ ...++.+. ...|+-..+.... ... ....+. .-..+.+++|.+.+..|..
T Consensus 304 C~--~~-~~~Ll~s~-~~~i~~i~l~~~~-------------------~~~-~~l~~~---~~~~~~~ld~d~~~~~iy~ 356 (628)
T 4a0p_A 304 CS--AP-TTFLLFSQ-KSAINRMVIDEQQ-------------------SPD-IILPIH---SLRNVRAIDYDPLDKQLYW 356 (628)
T ss_dssp EE--CC-SSEEEEEE-TTEEEEECCCTTC-------------------CCC-EECCCT---TCSCEEEEEEETTTTEEEE
T ss_pred Cc--cc-cceeeeec-cceEEEEeccccc-------------------Cce-EEEEeh---hcCCceEEEEecCCCeEEE
Confidence 00 01 11222222 2233322221000 000 000011 2244778899988777777
Q ss_pred Ee--CCeEEEEEcCCCccccccCC------CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEee-cccccCee
Q 001248 836 AS--GGKISLFNMMTFKTMATFMP------PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-KGHSKRIT 906 (1114)
Q Consensus 836 ~~--dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l-~~h~~~V~ 906 (1114)
+. .+.|+.++.........+.. ....+..+|+....+++..+-+..+.|.+.++. |+....+ ........
T Consensus 357 sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr 435 (628)
T 4a0p_A 357 IDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPR 435 (628)
T ss_dssp EETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEE
T ss_pred EecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCcee
Confidence 76 57898888764332222322 234688999998446666677778899999986 4444333 33446688
Q ss_pred EEEEcCCCCEE-EEEeCCC--cEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE--eCCeEEEEEcC
Q 001248 907 GLAFSHALNVL-VSSGADS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETT 981 (1114)
Q Consensus 907 ~l~~s~d~~~l-~s~s~D~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~--~d~~i~iwd~~ 981 (1114)
+|++.|...+| .+-.... .|...+++...... ... .. ......+++.+++..|..+ ..+.|..+++.
T Consensus 436 ~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~--l~~---~~---l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~d 507 (628)
T 4a0p_A 436 AVVVNPEKGYMYFTNLQERSPKIERAALDGTEREV--LFF---SG---LSKPIALALDSRLGKLFWADSDLRRIESSDLS 507 (628)
T ss_dssp EEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEE--EEC---SS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred eEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEE--EEe---cc---CCCccEEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 99999944444 4433222 56666676533211 111 11 1245899999987777764 45789999985
Q ss_pred CCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeC
Q 001248 982 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 982 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
. ...+.+.. ........|++.. +...++-...+.|...|..+|+....+.
T Consensus 508 G-~~r~~~~~-~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~i~ 557 (628)
T 4a0p_A 508 G-ANRIVLED-SNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTKVQ 557 (628)
T ss_dssp S-CSCEEEEC-SSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEEEE
T ss_pred C-CceEEEEc-CCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEEEe
Confidence 4 43444432 2234567888754 3334444455778888888777554443
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=0.00017 Score=85.34 Aligned_cols=496 Identities=9% Similarity=-0.006 Sum_probs=246.2
Q ss_pred cCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeE
Q 001248 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 435 (1114)
Q Consensus 356 ~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 435 (1114)
..-..+.+++|++.+.+|+.+-...+.|..++++....... ++...-.....+|+.+.+..|
T Consensus 37 ~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~------------------v~~~~~~~P~GlAvD~~~~~l 98 (619)
T 3s94_A 37 GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN------------------VVVSGLLSPDGLACDWLGEKL 98 (619)
T ss_dssp BCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE------------------EECSSCSCEEEEEEETTTTEE
T ss_pred cCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE------------------EEeCCCCCcCeEEEEecCCEE
Confidence 34566889999998887666666678898888875421110 122222468899999966655
Q ss_pred EEE-eCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEe-eccccCEE
Q 001248 436 GVA-YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVY 513 (1114)
Q Consensus 436 as~-~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~ 513 (1114)
..+ ...+.|.+.++++..... .+...-.....|++.|.+..+++.--+..+.|...++. |.....+ ...-....
T Consensus 99 y~~d~~~~~I~v~~~dG~~~~~---l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~~~~P~ 174 (619)
T 3s94_A 99 YWTDSETNRIEVSNLDGSLRKV---LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPN 174 (619)
T ss_dssp EEEETTTTEEEEEETTSCSCEE---EECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSSEE
T ss_pred EEEeCCCCEEEEEECCCCCEEE---EEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC-CCceEEEEeCCCCCCc
Confidence 554 556889999988654221 12233445789999998775333322334667777755 4333333 23345667
Q ss_pred EEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEe
Q 001248 514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 593 (1114)
Q Consensus 514 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 593 (1114)
.+++.+.. +.+.++-...+.|...|++................. +++..+ ..+++-.
T Consensus 175 Glald~~~-~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~g---------------------i~~~~~-~ly~td~ 231 (619)
T 3s94_A 175 GLTLDYEE-QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFA---------------------LTLFED-ILYWTDW 231 (619)
T ss_dssp EEEEETTT-TEEEEEETTTCCEEEESSSCCEEC---------CCC---------------------EEESSS-EEEEECT
T ss_pred EEEEEccC-CEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceE---------------------EEEeCC-EEEEecC
Confidence 78876543 345555555677888877642222111101111112 222222 2233334
Q ss_pred CCCeEEEEECCCcceEEEeccCCCCCCcCeEEEc-CCCCEEEEEeC--------CCcEEEEEccCCccceeecccccccc
Q 001248 594 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTN--------DNGIKILATSDGIRLLRTFENLAYDA 664 (1114)
Q Consensus 594 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~~~~~--------dg~i~iwd~~~~~~~~~~~~~~~~~~ 664 (1114)
..+.|...|..+++....+.... .....+.+. +..+- .+.. -..+.+-..... .
T Consensus 232 ~~~~V~~~d~~tg~~~~~i~~~~--~~p~~i~v~~~~~qp--~~~n~C~~~ng~Cs~lCl~~~~~~-----------~-- 294 (619)
T 3s94_A 232 STHSILACNKYTGEGLREIHSDI--FSPMDIHAFSQQRQP--NATNPCGIDNGGCSHLCLMSPVKP-----------F-- 294 (619)
T ss_dssp TTCSEEEEESSSCCCCEECCSCC--CCCSEEEECCGGGSC--CCCCTTTTTGGGCSSEEEECSSTT-----------S--
T ss_pred CCCEEEEEECCCCcccEEEecCC--CCCcEEEEEccccCC--CccccccCCCCcccceEECCCCCC-----------C--
Confidence 56778888887776655543221 112233221 11000 0000 000000000000 0
Q ss_pred ccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCcccc-C-CCcccccccCCCceeEEEeccCCCCccccc
Q 001248 665 SRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSL-A-DVKPRITEESNDKSKVWKLTELSEPNQCRS 742 (1114)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~ 742 (1114)
.. +..+.+ . .+..+.... . ...+|+. +..+.|+..++........ .
T Consensus 295 ~~-------C~C~~g------------------~----~l~~d~~~C~~~~~~~Ll~-~~~~~i~~i~l~~~~~~~~--~ 342 (619)
T 3s94_A 295 YQ-------CACPTG------------------V----KLLENGKTCKDGATELLLL-ARRTDLRRISLDTPDFTDI--V 342 (619)
T ss_dssp EE-------EECCTT------------------C----CBCTTSSCBCSSCSEEEEE-EESSCEEEEESSSTTCCCE--E
T ss_pred ce-------EeCCch------------------h----eecccCcccCCCCceEEEE-EcccceEEEecCCCcccee--E
Confidence 00 000000 0 000011111 1 1222333 3345666666654322111 1
Q ss_pred cccCccccccceEEEEEccCcceee-ecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCc
Q 001248 743 LRLPENLRATKISRLIFTNSGNAIL-ALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAV 821 (1114)
Q Consensus 743 ~~~~~~~~~~~i~~l~~s~~~~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v 821 (1114)
+.++ ....+..++|.+.+..|+ +-...+.|+.+++..... .. .+.. .-...
T Consensus 343 ~~~~---~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~----------------------~~-v~~~--~~~~p 394 (619)
T 3s94_A 343 LQLE---DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGS----------------------QF-VVTA--QIAHP 394 (619)
T ss_dssp CCCS---CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----------------------EE-EECS--SCSCC
T ss_pred Eecc---ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCcc----------------------EE-EEEC--CCCCc
Confidence 1111 234577899988555444 444467777666532100 00 0000 22456
Q ss_pred cEEEEeeCCCEEEEEe--CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEe-CCCcEEEEEcccceEEEee
Q 001248 822 PCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDEVKSKL 898 (1114)
Q Consensus 822 ~~v~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~-~dg~v~iwd~~~~~~~~~l 898 (1114)
..+++...+..|..+. .+.|.+.++........+...-.....+++.|..|.+..+-. ..+.|...++.........
T Consensus 395 ~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~ 474 (619)
T 3s94_A 395 DGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLV 474 (619)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE
T ss_pred CceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEE
Confidence 7899997666666655 588999998754322222333456899999994465555432 2356777776533222222
Q ss_pred cccccCeeEEEEcCCCCEEEEEe-CCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE--eCCeE
Q 001248 899 KGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQL 975 (1114)
Q Consensus 899 ~~h~~~V~~l~~s~d~~~l~s~s-~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~--~d~~i 975 (1114)
...-...++|++.+++..|..+. ..+.|...+++...... ... ... .....+++..+ +|..+ ..+.|
T Consensus 475 ~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~--~~~---~~l---~~P~glav~~~--~ly~tD~~~~~I 544 (619)
T 3s94_A 475 NTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRV--LVE---DKI---PHIFGFTLLGD--YVYWTDWQRRSI 544 (619)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE--EEE---CCC---CSSCCEEEETT--EEEEECTTSSCE
T ss_pred eCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEE--Eec---cCC---CCcEEEEEECC--EEEEeecCCCeE
Confidence 33345678999998777776665 44678888887643321 111 111 12245555433 44443 45566
Q ss_pred EEEEcCCC
Q 001248 976 AIFETTKL 983 (1114)
Q Consensus 976 ~iwd~~~~ 983 (1114)
...|..++
T Consensus 545 ~~~~k~~g 552 (619)
T 3s94_A 545 ERVHKRSA 552 (619)
T ss_dssp EEEESSSC
T ss_pred EEEEcCCC
Confidence 66666655
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.91 E-value=4.7e-10 Score=125.10 Aligned_cols=190 Identities=13% Similarity=0.108 Sum_probs=108.4
Q ss_pred CCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCC
Q 001248 871 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTP 950 (1114)
Q Consensus 871 d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~ 950 (1114)
++..+++++.||.|+.||..+|+.+..+.. +.+.+..+..++..+++++.|+.|+.||..+++..............
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~- 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ- 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT-
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc-
Confidence 466888999999999999999999988876 56666667778888888899999999999876643211110000000
Q ss_pred CCCCceEEEEccCCcEEEE-EeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCee
Q 001248 951 TAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1029 (1114)
Q Consensus 951 ~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~ 1029 (1114)
....+..++ .+++ +.++.+..||..+|+.+..+.. +. ...++|++..|++++.|+.|+.||..+|+.
T Consensus 85 -----~sp~~~~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~--~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~ 152 (369)
T 2hz6_A 85 -----ASPCRSSDG-ILYMGKKQDIWYVIDLLTGEKQQTLSS--AF----ADSLSPSTSLLYLGRTEYTITMYDTKTREL 152 (369)
T ss_dssp -----TCSCC------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSSSC
T ss_pred -----cCceEecCC-EEEEEeCCCEEEEEECCCCcEEEEecC--CC----cccccccCCEEEEEecCCEEEEEECCCCCE
Confidence 001112344 4444 6889999999999998766542 22 245677889999999999999999999998
Q ss_pred eEEeCCCcccCCCCCCCCccceEEEecCC--CCCeEEEEeCCCcEEEEeccCCCCcccCC
Q 001248 1030 RCRINPSAYLPAGVSSSNVHPLVIAAHPQ--EPNEFALGLSDGGVHVFEPLESEGKWGVP 1087 (1114)
Q Consensus 1030 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--d~~~l~s~~~Dg~v~vW~i~~~~~~~~~~ 1087 (1114)
+.++....+ . ..++..+ -...+++++.||.|+.||..+|+..|...
T Consensus 153 ~W~~~~~~~----------~--~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 153 RWNATYFDY----------A--ASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp CCEEEEEEE----------C--CBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred EEeEecccc----------c--CccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 766541111 1 1112220 01567888999999999999999888753
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.1e-07 Score=102.33 Aligned_cols=296 Identities=12% Similarity=0.075 Sum_probs=180.3
Q ss_pred CcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccc
Q 001248 714 VKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATA 793 (1114)
Q Consensus 714 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 793 (1114)
...+..++.++.+..|| .+...... .. .....+.++.+.+++. +.+++.+ +..++....
T Consensus 30 ~g~l~v~t~~~~l~~~d-~~g~~~~~---~~----~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~~g~---------- 88 (330)
T 3hxj_A 30 NGTIYLGSSNKNLYAIN-TDGSVKWF---FK----SGEIIECRPSIGKDGT-IYFGSDK--VYAINPDGT---------- 88 (330)
T ss_dssp TSCEECSSTTTTTEEEC-TTSCEEES---SC----GGGEEEECCEETTTTE-ECCSSCE--EEEECCCGG----------
T ss_pred CCeEEEEcCCCEEEEEC-CCCcEEEE---Ee----cCCCcccceEEecCCc-EEEecCc--EEEECCCCc----------
Confidence 44566777788888888 54332111 11 1234456777777776 4444444 666553110
Q ss_pred cccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCC
Q 001248 794 SVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDN 872 (1114)
Q Consensus 794 ~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~ 872 (1114)
.+|....+ .......++. ++ .+.+++ ++.|..+|.. ++...........+.++...+ ++
T Consensus 89 ----~~~~~~~~------------~~~~~~~~~~-~~-~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~-~g 148 (330)
T 3hxj_A 89 ----EKWRFDTK------------KAIVSDFTIF-ED-ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSE-DG 148 (330)
T ss_dssp ----GGGGSCC-----------------CCEEEE-TT-EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT-TS
T ss_pred ----EEEEEECC------------CCcccCceEE-CC-EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcC-CC
Confidence 12222111 1112223333 44 455555 8999999988 776666555555566777776 56
Q ss_pred cEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCC
Q 001248 873 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA 952 (1114)
Q Consensus 873 ~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 952 (1114)
. |.+|+.++.|..||.. ++.+..+......+.++.+.+++.+++.. +.|..|| .+++.... .... .
T Consensus 149 ~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~----~~~~----~ 214 (330)
T 3hxj_A 149 T-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWN----FYAG----Y 214 (330)
T ss_dssp C-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEE----ECCS----S
T ss_pred E-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEE----EccC----C
Confidence 5 5557888999999998 87777776666678888888888765544 7799999 55432211 1111 1
Q ss_pred CCceEEEEccCCcEEEEEeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEE
Q 001248 953 QSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCR 1032 (1114)
Q Consensus 953 ~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~ 1032 (1114)
..+.++.+.++|.+.+.+.++.+..+|. +++.+..+.. ....+.++.+.+++ .|..++.+|.|..+|. +++.+..
T Consensus 215 ~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~--~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~ 289 (330)
T 3hxj_A 215 WTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKT--GKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWN 289 (330)
T ss_dssp CCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEEC--SSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEE
T ss_pred cceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeC--CCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEE
Confidence 2467888899998877777889999974 5555555442 23344556666566 4666778889999995 7777766
Q ss_pred eCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1033 INPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1033 ~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
+. .+. ..+. ++..++ + ..|..|+.+|.+++...+..+
T Consensus 290 ~~----~~~----~~~~--~~~~d~-~-g~l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 290 FE----TGS----WIIA--TPVIDE-N-GTIYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp EE----CSS----CCCS--CCEECT-T-CCEEEECTTSCEEEEEC----
T ss_pred EE----cCC----cccc--ceEEcC-C-CEEEEEcCCCeEEEEeccccc
Confidence 54 221 1133 344444 3 457779999999998876654
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.87 E-value=6.5e-10 Score=123.94 Aligned_cols=186 Identities=12% Similarity=0.022 Sum_probs=111.7
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccC-ee
Q 001248 829 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR-IT 906 (1114)
Q Consensus 829 d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~-V~ 906 (1114)
++..+++++ ||.|+.||..+++.+..+.. ..+.+..+.. ++.++++++.||.|+.||..+|+.+..+..+... +.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence 566777777 89999999999999888775 4555555666 6778888889999999999999887776544221 11
Q ss_pred -EEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCCCc
Q 001248 907 -GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLE 984 (1114)
Q Consensus 907 -~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~~~ 984 (1114)
+.++. ++..|++++.|+.|+.||..+++.... ...+ ....++|++..+++ +.++.|..||..+|+
T Consensus 85 ~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~-----~~~~-------~~~~~~p~~~~v~~~~~dg~v~a~d~~tG~ 151 (369)
T 2hz6_A 85 ASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQT-----LSSA-------FADSLSPSTSLLYLGRTEYTITMYDTKTRE 151 (369)
T ss_dssp TCSCC------CCCCEEEEEEEEECCC----------------------------------EEEEEEEEEEECCCSSSSS
T ss_pred cCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEE-----ecCC-------CcccccccCCEEEEEecCCEEEEEECCCCC
Confidence 11111 345788888999999999998765321 1111 12345667777777 578999999999998
Q ss_pred eeeeeecCCCCcCeeEEEECCCC---CEEEEEEcCCeEEEEEcCCCeeeEEeC
Q 001248 985 CVKQWVPRESSAPITHATFSCDS---QLVYACFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 985 ~~~~~~~~~h~~~v~~l~~s~dg---~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
.+..+.... ....+++++. ..+++++.||.|+.||..+|+.+-+..
T Consensus 152 ~~W~~~~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 152 LRWNATYFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp CCCEEEEEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred EEEeEeccc----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 876654221 2233444432 567778899999999999999877654
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=1.9e-06 Score=103.83 Aligned_cols=168 Identities=14% Similarity=0.137 Sum_probs=112.8
Q ss_pred EEEEEecCCCcEEEEEeCCCc-------------------EEEEEcccceEEEeecc--cc-------cCeeEEEEcCCC
Q 001248 863 TFLAFHPQDNNIIAIGMDDSS-------------------IQIYNVRVDEVKSKLKG--HS-------KRITGLAFSHAL 914 (1114)
Q Consensus 863 ~~l~~sp~d~~~la~g~~dg~-------------------v~iwd~~~~~~~~~l~~--h~-------~~V~~l~~s~d~ 914 (1114)
..++++| +..++++++.++. |..+|..+|+.+..++. |. .+.....+..+|
T Consensus 233 ~~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G 311 (668)
T 1kv9_A 233 DSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDG 311 (668)
T ss_dssp SCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETT
T ss_pred cceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCC
Confidence 3578888 6778888887764 99999999998877654 32 222222333466
Q ss_pred C---EEEEEeCCCcEEEEeCCCCcccccccccc---------CCCC-------C-C-----------CCCCceEEEEccC
Q 001248 915 N---VLVSSGADSQLCVWSSDGWEKQKNRFLQI---------PTGR-------T-P-----------TAQSDTRVQFHQD 963 (1114)
Q Consensus 915 ~---~l~s~s~D~~v~iwd~~~~~~~~~~~~~~---------~~~~-------~-~-----------~~~~i~~v~fspd 963 (1114)
+ .++.++.+|.+.++|..+++......... ..+. . . ....-..++++|+
T Consensus 312 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~ 391 (668)
T 1kv9_A 312 KPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPG 391 (668)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETT
T ss_pred cEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCC
Confidence 5 68899999999999999987642110000 0000 0 0 0000123788888
Q ss_pred CcEEEE-E------------------------------------eCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCC
Q 001248 964 QIHFLV-V------------------------------------HETQLAIFETTKLECVKQWVPRESSAPITHATFSCD 1006 (1114)
Q Consensus 964 g~~l~~-~------------------------------------~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~d 1006 (1114)
...+.+ . .++.|..||..+++.+-.... ...+....+...
T Consensus 392 ~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~~~~~t~ 468 (668)
T 1kv9_A 392 TGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY---PTHWNGGTLSTA 468 (668)
T ss_dssp TTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE---SSSCCCCEEEET
T ss_pred CCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC---CCCCcCceeEeC
Confidence 776664 1 127799999999998766543 223333445557
Q ss_pred CCEEEEEEcCCeEEEEEcCCCeeeEEeC
Q 001248 1007 SQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 1007 g~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
+.++++++.||.+++||..+|+.+.++.
T Consensus 469 gg~vf~g~~dg~l~a~d~~tG~~l~~~~ 496 (668)
T 1kv9_A 469 GNLVFQGTAAGQMHAYSADKGEALWQFE 496 (668)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEECCcccchhhhhhcChhheEec
Confidence 8899999999999999999999999887
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=2.8e-06 Score=99.67 Aligned_cols=166 Identities=13% Similarity=0.115 Sum_probs=104.7
Q ss_pred EEEEecCCCcEEEEEeCC----------------CcEEEEEcccceEEEeecccc----------cCeeEEEEc-CCC--
Q 001248 864 FLAFHPQDNNIIAIGMDD----------------SSIQIYNVRVDEVKSKLKGHS----------KRITGLAFS-HAL-- 914 (1114)
Q Consensus 864 ~l~~sp~d~~~la~g~~d----------------g~v~iwd~~~~~~~~~l~~h~----------~~V~~l~~s-~d~-- 914 (1114)
.+++.+ ...++..+..+ +.|.-+|..+|+.+..++... .++. +... .+|
T Consensus 245 ~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~ 322 (599)
T 1w6s_A 245 WYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKA 322 (599)
T ss_dssp CCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCE
T ss_pred ceeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcE
Confidence 456777 55667666655 389999999999887765421 1121 2222 467
Q ss_pred -CEEEEEeCCCcEEEEeCCCCcccccccccc----------CCCCC---------------------CCCCCceEEEEcc
Q 001248 915 -NVLVSSGADSQLCVWSSDGWEKQKNRFLQI----------PTGRT---------------------PTAQSDTRVQFHQ 962 (1114)
Q Consensus 915 -~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~----------~~~~~---------------------~~~~~i~~v~fsp 962 (1114)
+.++.++.+|.+.++|..+++..-...... ..+.. .....-..++|+|
T Consensus 323 ~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp 402 (599)
T 1w6s_A 323 RKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP 402 (599)
T ss_dssp EEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET
T ss_pred EEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC
Confidence 567889999999999999887643221110 00000 0000113467777
Q ss_pred CCcEEEEE----------------------------------------eCCeEEEEEcCCCceeeeeecCCCCcCeeEEE
Q 001248 963 DQIHFLVV----------------------------------------HETQLAIFETTKLECVKQWVPRESSAPITHAT 1002 (1114)
Q Consensus 963 dg~~l~~~----------------------------------------~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~ 1002 (1114)
+..++++. ..+.|..||+.+++.+-..... .++..-.
T Consensus 403 ~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~---~~~~~g~ 479 (599)
T 1w6s_A 403 KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER---FAVWGGT 479 (599)
T ss_dssp TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES---SCCCSBC
T ss_pred CCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC---CCccCcc
Confidence 76665541 2367888999999887665422 1121111
Q ss_pred ECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeC
Q 001248 1003 FSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 1003 ~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
+...+.+++.++.||.++.||..+|+.+-+++
T Consensus 480 ~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~ 511 (599)
T 1w6s_A 480 MATAGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (599)
T ss_dssp EEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred eEecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence 23367788889999999999999999998886
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=98.78 E-value=0.00093 Score=84.50 Aligned_cols=175 Identities=9% Similarity=0.022 Sum_probs=101.6
Q ss_pred cEEEEEcccceEEEeecc-cccCeeEEE---EcCC-CCEEEEEe----------CCCcEEEEeCCCCccccccccccCCC
Q 001248 883 SIQIYNVRVDEVKSKLKG-HSKRITGLA---FSHA-LNVLVSSG----------ADSQLCVWSSDGWEKQKNRFLQIPTG 947 (1114)
Q Consensus 883 ~v~iwd~~~~~~~~~l~~-h~~~V~~l~---~s~d-~~~l~s~s----------~D~~v~iwd~~~~~~~~~~~~~~~~~ 947 (1114)
.|++.|..+++.+..+.- ....+.+++ |..+ ..+|+.|+ ..|.|.+|++..++... ......
T Consensus 808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~l-v~~~~v-- 884 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQT-VAEKEV-- 884 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEE-EEEEEE--
T ss_pred EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEE-EEEEEc--
Confidence 466777777766544432 122344444 4333 46888876 24789999987432211 111111
Q ss_pred CCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEE--cC
Q 001248 948 RTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS--AA 1025 (1114)
Q Consensus 948 ~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd--~~ 1025 (1114)
.+.+++++-- +| +|+++-..++++|++...+.++ .....+. .|..+.....+.++++|..-..|.++. ..
T Consensus 885 ----~g~v~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~-~~~~~~~-~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~ 956 (1158)
T 3ei3_A 885 ----KGAVYSMVEF-NG-KLLASINSTVRLYEWTTEKELR-TECNHYN-NIMALYLKTKGDFILVGDLMRSVLLLAYKPM 956 (1158)
T ss_dssp ----SSCEEEEEEE-TT-EEEEEETTEEEEEEECTTSCEE-EEEEECC-CSCEEEEEEETTEEEEEESSBCEEEEEEETT
T ss_pred ----CCcCEEEeee-CC-EEEEEcCCEEEEEECCCCceEE-EEeeccc-cEEEEEEeccCCEEEEEEhhheEEEEEEEcC
Confidence 1356665533 34 6777778999999998765444 2111111 233333333577899998777777654 44
Q ss_pred CCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccC
Q 001248 1026 NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1026 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~ 1079 (1114)
.+++...-. .+.+ .+++++.|.. ...++.++.+|++++.+...
T Consensus 957 ~~~L~~~a~--D~~~-------~~vta~~~ld--~~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 957 EGNFEEIAR--DFNP-------NWMSAVEILD--DDNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp TTEEEEEEE--CCSC-------BCEEEEEEEE--TTEEEEEETTSEEEEEEECT
T ss_pred CCeEEEEEe--eccc-------ccEEEEEEEc--cCcEEEEcCCCcEEEEecCC
Confidence 444443222 1222 4455788774 35888899999999998865
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=6.7e-06 Score=96.72 Aligned_cols=196 Identities=9% Similarity=-0.089 Sum_probs=119.0
Q ss_pred EEEEeeCCCEEEEEe-C----------------CeEEEEEcCCCccccccCCC--C-------CCeEEEEEecCCC---c
Q 001248 823 CFALSKNDSYVMSAS-G----------------GKISLFNMMTFKTMATFMPP--P-------PAATFLAFHPQDN---N 873 (1114)
Q Consensus 823 ~v~~s~d~~~l~~~~-d----------------g~i~iwd~~~~~~~~~~~~~--~-------~~i~~l~~sp~d~---~ 873 (1114)
.+++.++...+..+. + +.|..+|..+++.+..++.. . ....-+.... +| +
T Consensus 239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~-~G~~~~ 317 (571)
T 2ad6_A 239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPV-NGKMTP 317 (571)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEE-TTEEEE
T ss_pred eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEeccc-CCcEEE
Confidence 456666655655554 2 35899999999887665421 1 1112223334 56 4
Q ss_pred EEEEEeCCCcEEEEEcccceEEEeecccc-------------cCe--------------------------eEEEEcCCC
Q 001248 874 IIAIGMDDSSIQIYNVRVDEVKSKLKGHS-------------KRI--------------------------TGLAFSHAL 914 (1114)
Q Consensus 874 ~la~g~~dg~v~iwd~~~~~~~~~l~~h~-------------~~V--------------------------~~l~~s~d~ 914 (1114)
+++.++.+|.++++|..+|+.+....-.. .+| ..++++|+.
T Consensus 318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~ 397 (571)
T 2ad6_A 318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES 397 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence 67889999999999999998876653211 111 246788888
Q ss_pred CEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCCceeeeeecCCC
Q 001248 915 NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRES 994 (1114)
Q Consensus 915 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h 994 (1114)
.+|+..+.+....++.....- ..+. .-.+....+..+|.+. ....++.|..||..+++.+-.+...
T Consensus 398 g~~yv~~~~~~~~~~~~~~~~---------~~g~-~~~g~~~~~~~~~~~~--~~~~~g~l~a~D~~tG~~~W~~~~~-- 463 (571)
T 2ad6_A 398 RTLYAGLNHICMDWEPFMLPY---------RAGQ-FFVGATLAMYPGPNGP--TKKEMGQIRAFDLTTGKAKWTKWEK-- 463 (571)
T ss_dssp TEEEEEEECEEEEEEECCCCC---------CTTS-CCCCEEEEEEECTTST--TSCCCEEEEEECTTTCCEEEEEEES--
T ss_pred CEEEEEchhcccccccccccc---------ccCC-ccccccceeccCcccc--CCCCCCeEEEEECCCCCEEEEecCC--
Confidence 888888777666655543210 0010 0000111222233321 0013578889999999887666532
Q ss_pred CcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeC
Q 001248 995 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 995 ~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
..+.+..+...+.++++++.||.|+.||..+|+.+.++.
T Consensus 464 -~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 464 -FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp -SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred -CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence 222222333356778889999999999999999998887
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=3.5e-06 Score=101.40 Aligned_cols=81 Identities=15% Similarity=0.136 Sum_probs=54.0
Q ss_pred CCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEE
Q 001248 881 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF 960 (1114)
Q Consensus 881 dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~f 960 (1114)
+|.|+.||+.+++.+.+...+ ..+....+...+.+++.++.|+.|+.||..+++...... ...+. ...-+.+
T Consensus 437 ~g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~--~~~~~-----~~~p~~~ 508 (668)
T 1kv9_A 437 SGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE--AQSGI-----VAAPMTF 508 (668)
T ss_dssp EEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE--CSSCC-----CSCCEEE
T ss_pred cceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEec--CCCCc-----ccCceEE
Confidence 488999999999988776643 334444455567899999999999999999877543221 11111 1134555
Q ss_pred ccCCcEEEE
Q 001248 961 HQDQIHFLV 969 (1114)
Q Consensus 961 spdg~~l~~ 969 (1114)
..+|+..++
T Consensus 509 ~~~G~~yva 517 (668)
T 1kv9_A 509 ELAGRQYVA 517 (668)
T ss_dssp EETTEEEEE
T ss_pred EECCEEEEE
Confidence 677875443
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.72 E-value=0.0021 Score=79.16 Aligned_cols=534 Identities=12% Similarity=0.069 Sum_probs=271.0
Q ss_pred CCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEE
Q 001248 358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 437 (1114)
Q Consensus 358 ~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 437 (1114)
...|.++....+|. |-.|+.+ -+..||..+.+-.. + .......|.++.. .+| .|..
T Consensus 62 ~~~i~~i~~d~~g~--lWigT~~-Gl~~yd~~~~~f~~--------------~-----~~~~~~~i~~i~~-~~g-~lWi 117 (758)
T 3ott_A 62 NTRIYCGVIIDNTY--LYMGTDN-GILVYNYRADRYEQ--------------P-----ETDFPTDVRTMAL-QGD-TLWL 117 (758)
T ss_dssp SSCEEEEEEETTTE--EEEEETT-EEEEEETTTTEECC--------------C-----SCCCCSCEEEEEE-ETT-EEEE
T ss_pred CceEEEEEEcCCCc--EEEEeCC-CeEEEeCCCCEEEC--------------c-----ccCCCceEEEEEe-cCC-cEEE
Confidence 35688888888886 4455555 47899987653210 0 0111235777765 355 4555
Q ss_pred EeCCCeEEEEEccCCceeeeeEee-c-cccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeE-eecc----cc
Q 001248 438 AYSRHIVQIYSYHGGDEVRQHLEI-D-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI-FEGH----EA 510 (1114)
Q Consensus 438 ~~~dg~i~iwd~~~~~~~~~~~~l-~-~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~h----~~ 510 (1114)
++.+ -+..+|..+++... .... . -....|.++....+|. +.+ |+.+ -|..+|..+++.... .... ..
T Consensus 118 gt~~-Gl~~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~--lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~ 191 (758)
T 3ott_A 118 GALN-GLYTYQLQSRKLTS-FDTRRNGLPNNTIYSIIRTKDNQ--IYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNL 191 (758)
T ss_dssp EETT-EEEEEETTTCCEEE-ECHHHHCCSCSCEEEEEECTTCC--EEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSC
T ss_pred EcCC-cceeEeCCCCeEEE-eccCCCCcCCCeEEEEEEcCCCC--EEE-EeCC-CHhhCccCCCceEEecCCCccccccc
Confidence 6666 48888987755322 1000 0 1134688888888887 333 3333 477888766553221 1111 12
Q ss_pred CEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEE
Q 001248 511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 590 (1114)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~ 590 (1114)
.|.++.. +.++..|..|+. +-+..+|..+..... +. . .....+..+..+.++. |.
T Consensus 192 ~i~~i~~--d~~~~~lWigt~-~Gl~~~~~~~~~~~~-~~-------~-------------l~~~~i~~i~~d~~g~-lW 246 (758)
T 3ott_A 192 FVNSLLE--DTTRQCVWIGTE-GYLFQYFPSTGQIKQ-TE-------A-------------FHNNSIKSLALDGNGD-LL 246 (758)
T ss_dssp CEEEEEE--ETTTTEEEEEEE-EEEEEEETTTTEEEE-EE-------E-------------EEEEEEEEEEECTTCC-EE
T ss_pred eeEEEEE--ECCCCEEEEEEC-CCCeEEcCCCCeEEe-cc-------C-------------CCCCeEEEEEEcCCCC-EE
Confidence 3777663 333344444553 457777765432111 10 0 0011344455555555 44
Q ss_pred EEeCCCeEEEEECCCcceEEEeccCC-----CCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccc
Q 001248 591 AAGDDFSIKFWDMDSVQLLTSIDADG-----GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS 665 (1114)
Q Consensus 591 ~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 665 (1114)
.|+. +-+.+++..+++......... ....|.++....+|.+.+ |+..| +.++.. +. ....+.
T Consensus 247 igT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~~~-~~--~~~~~~------- 313 (758)
T 3ott_A 247 AGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLSRY-NS--ALQFIP------- 313 (758)
T ss_dssp EEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS-EEEECC-CC---CEEEE-------
T ss_pred EEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc-cccccc-CC--ceeEEe-------
Confidence 4554 458888887665432221110 112466777777776554 44445 443321 11 111000
Q ss_pred cCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCcccccccc
Q 001248 666 RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL 745 (1114)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~ 745 (1114)
... .
T Consensus 314 -----------------------------------------------------------------~~~-----------~ 317 (758)
T 3ott_A 314 -----------------------------------------------------------------ISQ-----------I 317 (758)
T ss_dssp -----------------------------------------------------------------HHH-----------H
T ss_pred -----------------------------------------------------------------ccc-----------C
Confidence 000 0
Q ss_pred CccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEE
Q 001248 746 PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA 825 (1114)
Q Consensus 746 ~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~ 825 (1114)
........|.++....+|...+. +.+|.. .++....... .++.+...... ..-....|.++.
T Consensus 318 ~~~~~~~~v~~i~~D~~g~lWiG-t~~Gl~-~~~~~~~~~~---------~~~~~~~~~~~-------~~l~~~~v~~i~ 379 (758)
T 3ott_A 318 TGTGDGNQFYSLFRDSKGFYWFG-GANGLI-RFTDPAGERH---------DAIWYRMGDKT-------YPLSHNRIRHIY 379 (758)
T ss_dssp SCSCCCCBEEEEEECTTCCEEEE-ETTEEE-EESCTTSSCC---------CCEEECTTCSS-------SCCSCSCEEEEE
T ss_pred CCCCCCceEEEEEEcCCCCEEEe-eCCcce-eecccccccc---------eeEEeccCCcC-------CCCCCCceEEEE
Confidence 00002235777777777775544 445533 3332211000 00001000000 000234588888
Q ss_pred EeeCCCEEEEEeCCeEEEEEcCCCcccccc--CC----CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc-----eE
Q 001248 826 LSKNDSYVMSASGGKISLFNMMTFKTMATF--MP----PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-----EV 894 (1114)
Q Consensus 826 ~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~--~~----~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~-----~~ 894 (1114)
...+|++-+. .++.|..||..+++..... .. ....|.++...+ ++. |-+|+..+-|.++|..+. ..
T Consensus 380 ~d~~g~lWig-t~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~-lWigT~~~Gl~~~~~~~~~~~~~~~ 456 (758)
T 3ott_A 380 EDKEQQLWIA-TDGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDT-AGQ-LWISTCLGGIFVVDKHKLMQSTSGQ 456 (758)
T ss_dssp ECTTSCEEEE-ETTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECT-TSE-EEEEESSSCEEEEEHHHHHHCCSSE
T ss_pred ECCCCCEEEE-eCCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcC-CCC-EEEEECCCceEEEccccccccCCcc
Confidence 8888876554 3678999998776543211 11 124578887766 555 445776667888986641 11
Q ss_pred E---Eeec---c-cccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEE
Q 001248 895 K---SKLK---G-HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 967 (1114)
Q Consensus 895 ~---~~l~---~-h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l 967 (1114)
. ..+. + ....|.++...++|.+.+.++..+-|..+|..+++.... ..........+.++....+|.+.
T Consensus 457 ~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~-----~~~~~~~~~~~~~i~~d~~g~lW 531 (758)
T 3ott_A 457 YIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKL-----FADELTGEKSPNYLLCDEDGLLW 531 (758)
T ss_dssp EECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEE-----CTTTSCGGGCEEEEEECTTSCEE
T ss_pred eecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEe-----cCCCcCCCcccceEEECCCCCEE
Confidence 1 1111 1 123588999999998776444444588899876443211 11101111356778888888877
Q ss_pred EEEeCCeEEEEEcCCCceeeeeecCC-CCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCC
Q 001248 968 LVVHETQLAIFETTKLECVKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSS 1046 (1114)
Q Consensus 968 ~~~~d~~i~iwd~~~~~~~~~~~~~~-h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1046 (1114)
+.+ .+.+..|+..+++... +...+ ....|.++... +| .|..++..| +..||..+.+... +. ++..
T Consensus 532 igt-~~Gl~~~~~~~~~~~~-~~~~gl~~~~i~~i~~~-~g-~lWi~t~~G-l~~~~~~~~~~~~-~~----~~~~---- 597 (758)
T 3ott_A 532 VGF-HGGVMRINPKDESQQS-ISFGSFSNNEILSMTCV-KN-SIWVSTTNG-LWIIDRKTMDARQ-QN----MTNK---- 597 (758)
T ss_dssp EEE-TTEEEEECC--CCCCB-CCCCC---CCEEEEEEE-TT-EEEEEESSC-EEEEETTTCCEEE-C------CCC----
T ss_pred EEe-cCceEEEecCCCceEE-ecccCCCccceEEEEEC-CC-CEEEECCCC-eEEEcCCCceeEE-ec----CCCC----
Confidence 665 4568889887665432 11111 13568888763 55 455565555 7778988776542 11 2211
Q ss_pred CccceEEEecCCCCCeEEEEeCCCcEEEEeccC
Q 001248 1047 NVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1047 ~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~ 1079 (1114)
... ...+...+| .|..|+.+|- ..++...
T Consensus 598 ~~~--~~~~~~~~G-~l~fG~~~Gl-~~f~p~~ 626 (758)
T 3ott_A 598 RFT--SLLFDPKED-CVYLGGADGF-GISHSNL 626 (758)
T ss_dssp CCS--EEEEETTTT-EEEEECBSEE-EEEEC--
T ss_pred cee--eeEEECCCC-cEEEecCCce-EEEChhh
Confidence 122 334443344 5677777774 5556554
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=8.4e-07 Score=91.37 Aligned_cols=206 Identities=11% Similarity=-0.009 Sum_probs=139.7
Q ss_pred CeEEEEEecCCCcEEEEEeC--CCcEEEEEcccceEEEeecccc-cCeeEEEEcCCCCEE-EEEeCCCcEEEEeCCCCcc
Q 001248 861 AATFLAFHPQDNNIIAIGMD--DSSIQIYNVRVDEVKSKLKGHS-KRITGLAFSHALNVL-VSSGADSQLCVWSSDGWEK 936 (1114)
Q Consensus 861 ~i~~l~~sp~d~~~la~g~~--dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~s~d~~~l-~s~s~D~~v~iwd~~~~~~ 936 (1114)
....++|++ ++.++++.+. ++.|+++|+.+++.+..+.-.. .....+++. ++.| ++.-.++.+.++|..+.+.
T Consensus 22 f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v 98 (266)
T 2iwa_A 22 FTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSN 98 (266)
T ss_dssp CEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEE
T ss_pred CcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcE
Confidence 368899999 6765555443 5799999999999888764211 122345554 4455 4455678999999998655
Q ss_pred ccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCeEEEEEcCCCceeeeeecCCCCc---CeeEEEECCCCCEEEE
Q 001248 937 QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSA---PITHATFSCDSQLVYA 1012 (1114)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~---~v~~l~~s~dg~~l~s 1012 (1114)
...... + .+ ....+++||+.|+++ .++.|.++|..+.+.+..+....+.. .+..+.|. +|+..+.
T Consensus 99 ~~~i~~----g-~~-----~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn 167 (266)
T 2iwa_A 99 IKNFTH----Q-MK-----DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWAN 167 (266)
T ss_dssp EEEEEC----C-SS-----SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEE
T ss_pred EEEEEC----C-CC-----CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEe
Confidence 332211 1 11 224467788877775 56789999999999888877543322 35678887 7754444
Q ss_pred EEcCCeEEEEEcCCCeeeEEeCCCcccC----CCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1013 CFLDATVCVFSAANLKLRCRINPSAYLP----AGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1013 ~s~Dg~I~vwd~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
...++.|.+.|..+++.+.++......+ .++ .....+..++|+|+...+++++...++|++.++.+.+
T Consensus 168 ~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~-~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 168 IWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGF-RDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp ETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTC-TTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred cCCCCeEEEEECCCCcEEEEEECCCcccccccccc-cccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 4457899999999999999987431110 010 1113445899999655677788889999999998765
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=9.2e-06 Score=85.83 Aligned_cols=202 Identities=10% Similarity=-0.024 Sum_probs=133.1
Q ss_pred CccEEEEeeCCCEEEEEe--CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEe
Q 001248 820 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 897 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~ 897 (1114)
.+..+++++++..|..+. ++.|..++..+......+.........++++++++.++++-...+.|.++++........
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 116 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL 116 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence 467899999877777666 689999999765443333333356889999994455666666678999999875332222
Q ss_pred ecccccCeeEEEEcCCCCEEEEEeC---CCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE--eC
Q 001248 898 LKGHSKRITGLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE 972 (1114)
Q Consensus 898 l~~h~~~V~~l~~s~d~~~l~s~s~---D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~--~d 972 (1114)
..........++++|++..|..+.. .+.|..++++..... .+... . ......+++++++..|.++ ..
T Consensus 117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~---~~~~~-~----~~~P~gia~d~~~~~lyv~d~~~ 188 (267)
T 1npe_A 117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR---ILAQD-N----LGLPNGLTFDAFSSQLCWVDAGT 188 (267)
T ss_dssp ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE---EEECT-T----CSCEEEEEEETTTTEEEEEETTT
T ss_pred EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcE---EEEEC-C----CCCCcEEEEcCCCCEEEEEECCC
Confidence 2222245689999997666655553 367888888753221 11111 1 1245899999988777664 56
Q ss_pred CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCCeeeEEeC
Q 001248 973 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 973 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s-~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
+.|.++|..+........ . ......+++ ++..|+.+. ..+.|.++|..+++.+..+.
T Consensus 189 ~~I~~~~~~g~~~~~~~~--~-~~~P~gi~~--d~~~lyva~~~~~~v~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 189 HRAECLNPAQPGRRKVLE--G-LQYPFAVTS--YGKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (267)
T ss_dssp TEEEEEETTEEEEEEEEE--C-CCSEEEEEE--ETTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred CEEEEEecCCCceEEEec--C-CCCceEEEE--eCCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence 789999997654333322 1 234566765 456666555 45899999999999998876
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=1.2e-06 Score=90.12 Aligned_cols=200 Identities=10% Similarity=0.050 Sum_probs=137.6
Q ss_pred CccEEEEeeCCCEEEEEe---CCeEEEEEcCCCccccccCCCCC-CeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEE
Q 001248 820 AVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 895 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~-~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~ 895 (1114)
....++|++|+...++.+ ++.|+++|+.+++.+..+..... ....+++. ++++.++.-.++.+.++|..+.+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 356899999876555543 47899999999998887653222 23355555 3456666667899999999999998
Q ss_pred EeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCe
Q 001248 896 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQ 974 (1114)
Q Consensus 896 ~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~ 974 (1114)
.++..-... ...+++||+.|+.+..+++|.++|..+.+.......... +.. ...+..+.|. +|+..+.. .++.
T Consensus 100 ~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~-~~p--~~~~nele~~-dg~lyvn~~~~~~ 173 (266)
T 2iwa_A 100 KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN-GHR--VIRLNELEYI-NGEVWANIWQTDC 173 (266)
T ss_dssp EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET-TEE--CCCEEEEEEE-TTEEEEEETTSSE
T ss_pred EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC-Ccc--cccceeEEEE-CCEEEEecCCCCe
Confidence 888532121 244556888777777789999999988665433222211 100 0134677888 77555444 5789
Q ss_pred EEEEEcCCCceeeeeecCC---------C--CcCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCC
Q 001248 975 LAIFETTKLECVKQWVPRE---------S--SAPITHATFSCDSQLVYACF-LDATVCVFSAANL 1027 (1114)
Q Consensus 975 i~iwd~~~~~~~~~~~~~~---------h--~~~v~~l~~s~dg~~l~s~s-~Dg~I~vwd~~~~ 1027 (1114)
|.+.|..+++.+..+...+ + ......|+|+|+++.|++++ ..+.+++.++...
T Consensus 174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 9999999999988886531 0 13568999999998765554 6788888887654
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=5e-05 Score=89.36 Aligned_cols=168 Identities=17% Similarity=0.153 Sum_probs=105.3
Q ss_pred EEEEEecCCCcEEEEEeC--------------------C----CcEEEEEcccceEEEeecc--ccc----CeeE-EEEc
Q 001248 863 TFLAFHPQDNNIIAIGMD--------------------D----SSIQIYNVRVDEVKSKLKG--HSK----RITG-LAFS 911 (1114)
Q Consensus 863 ~~l~~sp~d~~~la~g~~--------------------d----g~v~iwd~~~~~~~~~l~~--h~~----~V~~-l~~s 911 (1114)
..++++| +..++.++.. | +.|.-+|..+|+.+..++. |.. .+.. +.+.
T Consensus 249 ~~~a~d~-~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~ 327 (582)
T 1flg_A 249 QSASFDA-ETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFD 327 (582)
T ss_dssp SCCEEET-TTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEE
T ss_pred CCceEcC-CCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEe
Confidence 3567888 5556665553 2 6899999999998877643 321 1111 2222
Q ss_pred ---CCCC---EEEEEeCCCcEEEEeCCCCcccccccccc----------CCC-------CCC--------C---------
Q 001248 912 ---HALN---VLVSSGADSQLCVWSSDGWEKQKNRFLQI----------PTG-------RTP--------T--------- 951 (1114)
Q Consensus 912 ---~d~~---~l~s~s~D~~v~iwd~~~~~~~~~~~~~~----------~~~-------~~~--------~--------- 951 (1114)
.+|+ .++.++.+|.+.++|..+++..-...... ..+ ..+ .
T Consensus 328 ~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~ 407 (582)
T 1flg_A 328 YKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPP 407 (582)
T ss_dssp EECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSC
T ss_pred eecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcC
Confidence 4674 78889999999999998877543211110 000 000 0
Q ss_pred ---CCCceEEEEccCCcEEEE-E---------------------------------eCCeEEEEEcCCCceeeeeecCCC
Q 001248 952 ---AQSDTRVQFHQDQIHFLV-V---------------------------------HETQLAIFETTKLECVKQWVPRES 994 (1114)
Q Consensus 952 ---~~~i~~v~fspdg~~l~~-~---------------------------------~d~~i~iwd~~~~~~~~~~~~~~h 994 (1114)
...-..++++|+..++++ . .++.|..||+.+++.+-......
T Consensus 408 ~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~- 486 (582)
T 1flg_A 408 FLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL- 486 (582)
T ss_dssp TTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-
T ss_pred CccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-
Confidence 000124577776655544 2 14779999999999876654321
Q ss_pred CcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeC
Q 001248 995 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 995 ~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
++..-.+...+.++++++.||.++.||..+|+.+-+++
T Consensus 487 --~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~ 524 (582)
T 1flg_A 487 --PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ 524 (582)
T ss_dssp --CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred --CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEec
Confidence 22221222356788889999999999999999999887
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.9e-05 Score=92.86 Aligned_cols=83 Identities=10% Similarity=0.067 Sum_probs=53.4
Q ss_pred CCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEE
Q 001248 880 DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 959 (1114)
Q Consensus 880 ~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 959 (1114)
.+|.|+.||+.+++.+.++... ..+.+..+...+..++.++.|+.|+.||..+++..-... ...+. .-..+.
T Consensus 442 ~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~--~~~~~-----~~~p~~ 513 (571)
T 2ad6_A 442 EMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK--MPSGG-----IGSPMT 513 (571)
T ss_dssp CCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE--CSSCC-----CSCCEE
T ss_pred CCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe--CCCCc-----EeeeEE
Confidence 3588999999999988776532 233333333356678889999999999999987643221 11111 112345
Q ss_pred EccCCcEEEEE
Q 001248 960 FHQDQIHFLVV 970 (1114)
Q Consensus 960 fspdg~~l~~~ 970 (1114)
+..+|+.++..
T Consensus 514 ~~~~G~~yv~~ 524 (571)
T 2ad6_A 514 YSFKGKQYIGS 524 (571)
T ss_dssp EEETTEEEEEE
T ss_pred EEECCEEEEEE
Confidence 66888876663
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.55 E-value=3.7e-06 Score=85.20 Aligned_cols=184 Identities=10% Similarity=0.090 Sum_probs=125.9
Q ss_pred ccEEEEeeCCCEEEEEe-CC--eEEEEEcCCCccccccCCCCCCeEE--EEEecCCCcEEEEEeCCCcEEEEEcccceEE
Q 001248 821 VPCFALSKNDSYVMSAS-GG--KISLFNMMTFKTMATFMPPPPAATF--LAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 895 (1114)
Q Consensus 821 v~~v~~s~d~~~l~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~--l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~ 895 (1114)
...+.|+ ++.+..+.+ +| .|+++|+.+++.+..+.... .... +++. ++++.+..-.++.+.+||..+.+.+
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~ 120 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQV 120 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEE
Confidence 3678888 666555555 55 89999999999988876433 3333 4443 4555565667899999999999999
Q ss_pred EeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCe
Q 001248 896 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQ 974 (1114)
Q Consensus 896 ~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~ 974 (1114)
.++.... ....+++|++.|+.+..+++|.++|..+.+......... .+.. ...+..+.|. +|+..+.. .+..
T Consensus 121 ~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~-~g~~--~~~lNELe~~-~G~lyan~w~~~~ 193 (262)
T 3nol_A 121 RSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA-HGEE--LPELNELEWV-DGEIFANVWQTNK 193 (262)
T ss_dssp EEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEE-TTEE--CCCEEEEEEE-TTEEEEEETTSSE
T ss_pred EEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc-CCcc--ccccceeEEE-CCEEEEEEccCCe
Confidence 8887532 223334577777777667889999999866544322211 1111 0133456776 77655554 6789
Q ss_pred EEEEEcCCCceeeeeecCCC----------CcCeeEEEECCCCCEEEEEEc
Q 001248 975 LAIFETTKLECVKQWVPRES----------SAPITHATFSCDSQLVYACFL 1015 (1114)
Q Consensus 975 i~iwd~~~~~~~~~~~~~~h----------~~~v~~l~~s~dg~~l~s~s~ 1015 (1114)
|.+.|.++++.+..+...+- ..-...|||+|+++.|++++.
T Consensus 194 I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 194 IVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 99999999999888765311 235688999999998887764
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.54 E-value=1.9e-06 Score=97.86 Aligned_cols=235 Identities=8% Similarity=-0.007 Sum_probs=142.2
Q ss_pred CCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEE-c-CCCCeEEEEeC-----
Q 001248 368 PVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW-S-PDGSLFGVAYS----- 440 (1114)
Q Consensus 368 pdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~-s-pdg~~las~~~----- 440 (1114)
+||+++.++...++.|.+.|+.+.+......+ ........+++ + |+++++.+++.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~i------------------p~g~~phg~~~~~~p~~~~v~~~~~~~~p~ 160 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEI------------------PNAKGIHGLRPQKWPRSNYVFCNGEDETPL 160 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEEC------------------SSCCSEEEEEECCSSBCSEEEEEECSCEES
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeC------------------CCCCCCcceeeeecCCCcEEEEeccccccc
Confidence 49998777766678899999999887652111 11235788998 5 99999988852
Q ss_pred -------------CCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCC-------------------
Q 001248 441 -------------RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD------------------- 488 (1114)
Q Consensus 441 -------------dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d------------------- 488 (1114)
++.+.+.|..+.+...++. ..+ .-..++++|||++ +++++...
T Consensus 161 ~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~-Vgg---~pd~~~~spdGk~-~~vt~~~se~~~~i~~~~~~~~d~v~V 235 (595)
T 1fwx_A 161 VNDGTNMEDVANYVNVFTAVDADKWEVAWQVL-VSG---NLDNCDADYEGKW-AFSTSYNSEKGMTLPEMTAAEMDHIVV 235 (595)
T ss_dssp SCSSSSTTCGGGEEEEEEEEETTTTEEEEEEE-ESS---CCCCEEECSSSSE-EEEEESCTTCCSSHHHHTCCSEEEEEE
T ss_pred CCCCcccccccccCceEEEEECCCCeEEEEEE-eCC---CccceEECCCCCE-EEEEecCcccCcchhhccccccceEEE
Confidence 3579999999987666442 222 3467889999995 34444322
Q ss_pred ------------------CCEEEEeCCC--Ccc-eeEeeccccCEEEEeeccCCCceEEEEEe-cCCeEEEEEcCCCCCe
Q 001248 489 ------------------KTIKVWDATN--GAK-QYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDGKIKAWLYDNLGSR 546 (1114)
Q Consensus 489 ------------------~~i~iwd~~~--~~~-~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~d~~i~~wd~~~~~~~ 546 (1114)
+.|.|.|..+ ++. +..+..- ....++.+ ++||++++.++ .+.+|.++|+.+....
T Consensus 236 ~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~--sPDGk~v~V~~~~s~~VsVid~~~~~~~ 312 (595)
T 1fwx_A 236 FNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNM--APDKKHLCVAGKLSPTVTVLDVTRFDAV 312 (595)
T ss_dssp EEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEE-SSCCCEEE--CTTSSEEEEECTTSSBEEEEEGGGHHHH
T ss_pred eeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecC-CCceEEEE--cCCCCEEEEeCCCCCeEEEEECcccccc
Confidence 2366666666 444 3444321 23334454 56677666655 5889999999854211
Q ss_pred eeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCC----------cceEEEeccCC
Q 001248 547 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS----------VQLLTSIDADG 616 (1114)
Q Consensus 547 ~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~ 616 (1114)
. ... +.+.......-.......-++|+++|...++...|++|.+||+.+ .+.+.++..+.
T Consensus 313 ~--~~~--------l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~y 382 (595)
T 1fwx_A 313 F--YEN--------ADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHY 382 (595)
T ss_dssp H--HSC--------CCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSS
T ss_pred c--ccc--------cCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccc
Confidence 0 000 000000000001111333455566663455566899999999877 56777777653
Q ss_pred C---CCCcCeEEEcCCCCEEEEEeC
Q 001248 617 G---LPASPRIRFNKDGCLLAVSTN 638 (1114)
Q Consensus 617 ~---~~~v~~~~~s~d~~~l~~~~~ 638 (1114)
+ ......+.++|||++|+++..
T Consensus 383 qpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 383 QPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp CEEEEEETTTTSTTCCSSEEEEEES
T ss_pred ccccceeccceEeCCCCCEEEEcCC
Confidence 2 111234567899999998754
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=98.54 E-value=0.0078 Score=76.15 Aligned_cols=175 Identities=9% Similarity=0.062 Sum_probs=105.2
Q ss_pred CeEEEEEcCCCccccccCCCC-CCeEEEE---EecCCCcEEEEEe----------CCCcEEEEEcccceEEEee-ccccc
Q 001248 839 GKISLFNMMTFKTMATFMPPP-PAATFLA---FHPQDNNIIAIGM----------DDSSIQIYNVRVDEVKSKL-KGHSK 903 (1114)
Q Consensus 839 g~i~iwd~~~~~~~~~~~~~~-~~i~~l~---~sp~d~~~la~g~----------~dg~v~iwd~~~~~~~~~l-~~h~~ 903 (1114)
+.|++.|..+++.+..+.-.. ..+.+++ |..+...+|++|+ ..|.|++|++..+++.... ....+
T Consensus 807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g 886 (1158)
T 3ei3_A 807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKG 886 (1158)
T ss_dssp EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESS
T ss_pred EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCC
Confidence 568899988888766554332 2344544 4332357898887 4589999999755432221 22467
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEe-CCeEEE--EEc
Q 001248 904 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH-ETQLAI--FET 980 (1114)
Q Consensus 904 ~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~-d~~i~i--wd~ 980 (1114)
+|++++-- +|++||.. ..+|++|++...+.....+ ... ..+..+.....|.++++|+ -..+.+ |+.
T Consensus 887 ~v~al~~~-~g~Lla~i--g~~l~vy~l~~~~~L~~~~-----~~~---~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~ 955 (1158)
T 3ei3_A 887 AVYSMVEF-NGKLLASI--NSTVRLYEWTTEKELRTEC-----NHY---NNIMALYLKTKGDFILVGDLMRSVLLLAYKP 955 (1158)
T ss_dssp CEEEEEEE-TTEEEEEE--TTEEEEEEECTTSCEEEEE-----EEC---CCSCEEEEEEETTEEEEEESSBCEEEEEEET
T ss_pred cCEEEeee-CCEEEEEc--CCEEEEEECCCCceEEEEe-----ecc---ccEEEEEEeccCCEEEEEEhhheEEEEEEEc
Confidence 89988754 35444443 4689999998643222111 011 1233444444577777763 334444 554
Q ss_pred CCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCC
Q 001248 981 TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1026 (1114)
Q Consensus 981 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~ 1026 (1114)
...+. ..+..+.+..+++++.|-.++ .++.+..+|.+.+...+.
T Consensus 956 ~~~~L-~~~a~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 956 MEGNF-EEIARDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp TTTEE-EEEEECCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred CCCeE-EEEEeecccccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence 43333 233334557789999987555 666788999999998754
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=1.1e-05 Score=87.83 Aligned_cols=238 Identities=13% Similarity=0.081 Sum_probs=146.1
Q ss_pred CccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccC--C------------------CCCCeEEEEEecCCCcEEEEE
Q 001248 820 AVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM--P------------------PPPAATFLAFHPQDNNIIAIG 878 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~--~------------------~~~~i~~l~~sp~d~~~la~g 878 (1114)
...+++++++++++.++. ++.|..|+..++... .+. . ....+..+++.++++++++ +
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v-~ 97 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI-V 97 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE-E
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE-E
Confidence 456788999998666666 789999998764432 111 0 0135788999973455444 5
Q ss_pred eCCCcEEEEEcccceEEEeec----c-cccCeeEEEEcC-CCCEEEEEeC-----------------CCcEEEEeCCCCc
Q 001248 879 MDDSSIQIYNVRVDEVKSKLK----G-HSKRITGLAFSH-ALNVLVSSGA-----------------DSQLCVWSSDGWE 935 (1114)
Q Consensus 879 ~~dg~v~iwd~~~~~~~~~l~----~-h~~~V~~l~~s~-d~~~l~s~s~-----------------D~~v~iwd~~~~~ 935 (1114)
...+.|..+|..+++. ..+. + .....+.+++.+ +|++.++-.. ++.|..||..+++
T Consensus 98 d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 176 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE 176 (322)
T ss_dssp ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence 4455588888776542 2221 1 123468899999 9987776533 3668888876644
Q ss_pred cccccccccCCCCCCCCCCceEEEEccCCcEEEEE--eCCeEEEEEcCCCc--eeeeeecCCCCcCeeEEEECCCCCEEE
Q 001248 936 KQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLE--CVKQWVPRESSAPITHATFSCDSQLVY 1011 (1114)
Q Consensus 936 ~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~--~d~~i~iwd~~~~~--~~~~~~~~~h~~~v~~l~~s~dg~~l~ 1011 (1114)
... ..... .....++++|||++|.++ ..+.|.+|++.+.. ....+.. ..+ ...+++.++|.+.+
T Consensus 177 ~~~--~~~~~-------~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~g-P~gi~~d~~G~l~v 244 (322)
T 2fp8_A 177 TTL--LLKEL-------HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPN-PGNIKRNADGHFWV 244 (322)
T ss_dssp EEE--EEEEE-------SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSS-EEEEEECTTSCEEE
T ss_pred EEE--eccCC-------ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCC-CCCeEECCCCCEEE
Confidence 211 11111 134789999999977664 56789999987532 1112211 123 78899999998766
Q ss_pred EEEc----------CCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1012 ACFL----------DATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1012 s~s~----------Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
+... .+.|..+|. .++.+..+. .+.+... ..+..+++. ++++.++....+.|.++++....
T Consensus 245 a~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~----~~~g~~~--~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 245 SSSEELDGNMHGRVDPKGIKFDE-FGNILEVIP----LPPPFAG--EHFEQIQEH--DGLLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp EEEEETTSSTTSCEEEEEEEECT-TSCEEEEEE----CCTTTTT--SCCCEEEEE--TTEEEEECSSCSEEEEEEC----
T ss_pred EecCcccccccCCCccEEEEECC-CCCEEEEEE----CCCCCcc--ccceEEEEe--CCEEEEeecCCCceEEEeccccc
Confidence 6544 467888886 477777665 2222111 122355553 45666666678899999886544
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.53 E-value=2.8e-06 Score=86.07 Aligned_cols=206 Identities=11% Similarity=0.101 Sum_probs=132.3
Q ss_pred ccccCCCCCC--eEEEEEecCCCcEEEEEeCCC--cEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEe-CCCcE
Q 001248 852 MATFMPPPPA--ATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG-ADSQL 926 (1114)
Q Consensus 852 ~~~~~~~~~~--i~~l~~sp~d~~~la~g~~dg--~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s-~D~~v 926 (1114)
+.++. |... ...+.|+ ++.++.+.+.+| .|+++|+.+++.+..+.-. .........+++..|.... .++.+
T Consensus 34 v~~~p-hd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v 109 (262)
T 3nol_A 34 VHSYP-HDTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNGLG 109 (262)
T ss_dssp EEEEE-CCTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEE
T ss_pred EEEec-CCCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEEeeCCEE
Confidence 34443 4433 4788898 467777777766 9999999999988887643 3343433333455555544 58899
Q ss_pred EEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCeEEEEEcCCCceeeeeecCCCCcC---eeEEE
Q 001248 927 CVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAP---ITHAT 1002 (1114)
Q Consensus 927 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~---v~~l~ 1002 (1114)
.+||.++.+........ + ....+++|++.|+.+ .++.|.++|..+.+.+..+.......+ +..+.
T Consensus 110 ~v~D~~t~~~~~ti~~~---~--------eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe 178 (262)
T 3nol_A 110 FVWNIRNLRQVRSFNYD---G--------EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELE 178 (262)
T ss_dssp EEEETTTCCEEEEEECS---S--------CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEE
T ss_pred EEEECccCcEEEEEECC---C--------CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeE
Confidence 99999986654322221 1 224455778877774 467899999999999888776433333 44577
Q ss_pred ECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCC--CCCCCccceEEEecCCCCCeEEEEeCCCcEE
Q 001248 1003 FSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAG--VSSSNVHPLVIAAHPQEPNEFALGLSDGGVH 1073 (1114)
Q Consensus 1003 ~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~ 1073 (1114)
|. +|+..+..-.+..|.+.|..+|+.+..+......+.. .....-.+-.++|+|+...+++||-.=-.++
T Consensus 179 ~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ 250 (262)
T 3nol_A 179 WV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVF 250 (262)
T ss_dssp EE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEE
T ss_pred EE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceE
Confidence 76 7765554446889999999999999998854332211 0011122348999996555555553333333
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.52 E-value=4.1e-06 Score=84.72 Aligned_cols=182 Identities=9% Similarity=0.058 Sum_probs=124.9
Q ss_pred ccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEE--EEEecCCCcEEEEEeCCCcEEEEEcccceEEEe
Q 001248 821 VPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATF--LAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 897 (1114)
Q Consensus 821 v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~--l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~ 897 (1114)
...+.|+ ++.+.++.+ +|.|+++|+.+++.+..+ -...... +++. ++++.+..-.++.+.+||..+.+.+.+
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERT 131 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEE
Confidence 3577776 344444444 789999999999998877 2233333 5553 456666666789999999999999998
Q ss_pred ecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCeEE
Q 001248 898 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLA 976 (1114)
Q Consensus 898 l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~i~ 976 (1114)
+..- ..=.+++ +|++.|+.+..+++|.++|.++.+............. ...+..+.|. +|+..+.. .+..|.
T Consensus 132 i~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~---v~~lNeLe~~-dG~lyanvw~s~~I~ 204 (268)
T 3nok_A 132 TRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQP---VELINELECA-NGVIYANIWHSSDVL 204 (268)
T ss_dssp EECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEE---CCCEEEEEEE-TTEEEEEETTCSEEE
T ss_pred EeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcc---cccccccEEe-CCEEEEEECCCCeEE
Confidence 8753 2224455 5788888877899999999998765443322221110 1234566766 77655554 577999
Q ss_pred EEEcCCCceeeeeecCC-----------CCcCeeEEEECCCCCEEEEEE
Q 001248 977 IFETTKLECVKQWVPRE-----------SSAPITHATFSCDSQLVYACF 1014 (1114)
Q Consensus 977 iwd~~~~~~~~~~~~~~-----------h~~~v~~l~~s~dg~~l~s~s 1014 (1114)
+.|.++++.+..+...+ -..-...||++|+++.|++.+
T Consensus 205 vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 205 EIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 99999999988876431 124678899999888776665
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=9.2e-05 Score=78.01 Aligned_cols=223 Identities=12% Similarity=0.043 Sum_probs=136.4
Q ss_pred CCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEE
Q 001248 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 438 (1114)
Q Consensus 359 ~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 438 (1114)
..+.+++|++++.+|+++-..++.|.+++..++.... +....-.....++++|++..|..+
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~-------------------~~~~~~~~p~~ia~d~~~~~lyv~ 96 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT-------------------IIRQDLGSPEGIALDHLGRTIFWT 96 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE-------------------EECTTCCCEEEEEEETTTTEEEEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE-------------------EEECCCCCccEEEEEecCCeEEEE
Confidence 3578999999888777777778899999997654321 111122467899999976666555
Q ss_pred -eCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecC--CCCEEEEeCCCCcceeEee-ccccCEEE
Q 001248 439 -YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD--DKTIKVWDATNGAKQYIFE-GHEAPVYS 514 (1114)
Q Consensus 439 -~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~-~h~~~v~~ 514 (1114)
...+.|.+++.+.... .. ...........++++|++..++ ++... .+.|..+++. +.....+. ........
T Consensus 97 d~~~~~I~~~~~~g~~~-~~--~~~~~~~~P~~i~vd~~~g~ly-v~~~~~~~~~I~~~~~d-g~~~~~~~~~~~~~P~g 171 (267)
T 1npe_A 97 DSQLDRIEVAKMDGTQR-RV--LFDTGLVNPRGIVTDPVRGNLY-WTDWNRDNPKIETSHMD-GTNRRILAQDNLGLPNG 171 (267)
T ss_dssp ETTTTEEEEEETTSCSC-EE--EECSSCSSEEEEEEETTTTEEE-EEECCSSSCEEEEEETT-SCCCEEEECTTCSCEEE
T ss_pred ECCCCEEEEEEcCCCCE-EE--EEECCCCCccEEEEeeCCCEEE-EEECCCCCcEEEEEecC-CCCcEEEEECCCCCCcE
Confidence 4567899999875432 21 1111224578999999777533 33332 4678888865 43333332 23345677
Q ss_pred EeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEE-e
Q 001248 515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-G 593 (1114)
Q Consensus 515 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~-~ 593 (1114)
+++++.. +.+.++....+.|..+|............ .. ....++.. +..++.+ .
T Consensus 172 ia~d~~~-~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~---------------------~P~gi~~d--~~~lyva~~ 226 (267)
T 1npe_A 172 LTFDAFS-SQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQ---------------------YPFAVTSY--GKNLYYTDW 226 (267)
T ss_dssp EEEETTT-TEEEEEETTTTEEEEEETTEEEEEEEEEC-CC---------------------SEEEEEEE--TTEEEEEET
T ss_pred EEEcCCC-CEEEEEECCCCEEEEEecCCCceEEEecC-CC---------------------CceEEEEe--CCEEEEEEC
Confidence 8875532 24555556678899998864221111110 01 11122332 2344444 4
Q ss_pred CCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCC
Q 001248 594 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC 631 (1114)
Q Consensus 594 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~ 631 (1114)
..+.|.++|..+++.+..+..... .....+++.|++.
T Consensus 227 ~~~~v~~~d~~~g~~~~~i~~g~~-~~p~gi~~~~~~~ 263 (267)
T 1npe_A 227 KTNSVIAMDLAISKEMDTFHPHKQ-TRLYGITIALSQC 263 (267)
T ss_dssp TTTEEEEEETTTTEEEEEECCSSC-CCCCCEEEECSCC
T ss_pred CCCeEEEEeCCCCCceEEEccccc-cccceeeecCccC
Confidence 678999999999998888864321 2357788888764
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.50 E-value=2.3e-06 Score=86.65 Aligned_cols=192 Identities=15% Similarity=0.082 Sum_probs=128.9
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeE--EEEcCCCCEEEEEeCCCcEEEEeCCCCccccc
Q 001248 862 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG--LAFSHALNVLVSSGADSQLCVWSSDGWEKQKN 939 (1114)
Q Consensus 862 i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~--l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~ 939 (1114)
...+.|+ ++.++.+.+.+|.|+++|+.+++.+..+ -...... +++.. +++.+..-.++.+.+||.++.+....
T Consensus 57 tqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 57 TQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERT 131 (268)
T ss_dssp EEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred cceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEE
Confidence 4788887 4788888889999999999999988777 2233433 55543 24444555788999999998665433
Q ss_pred cccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCeEEEEEcCCCceeeeeecCCCCcC---eeEEEECCCCCEEEEEEc
Q 001248 940 RFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAP---ITHATFSCDSQLVYACFL 1015 (1114)
Q Consensus 940 ~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~---v~~l~~s~dg~~l~s~s~ 1015 (1114)
... . + ....+++|++.|+++ .++.|.++|..+.+.++.+....+..+ +..+.|. +|+..+..-.
T Consensus 132 i~~--~-~--------eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~ 199 (268)
T 3nok_A 132 TRY--S-G--------EGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWH 199 (268)
T ss_dssp EEC--S-S--------CCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred EeC--C-C--------ceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECC
Confidence 222 1 1 123444778888775 578999999999999988876444333 4566776 7754444446
Q ss_pred CCeEEEEEcCCCeeeEEeCCCcccCCC---CCCCCccceEEEecCCCCCeEEEEeCCC
Q 001248 1016 DATVCVFSAANLKLRCRINPSAYLPAG---VSSSNVHPLVIAAHPQEPNEFALGLSDG 1070 (1114)
Q Consensus 1016 Dg~I~vwd~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~d~~~l~s~~~Dg 1070 (1114)
+..|.+.|..+|+.+..+......+.. .....-.+-.|+|+|+..++++||-.=-
T Consensus 200 s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp 257 (268)
T 3nok_A 200 SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWP 257 (268)
T ss_dssp CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCS
T ss_pred CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCC
Confidence 789999999999999998854221100 0011122348999997666777774333
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=2e-05 Score=92.45 Aligned_cols=250 Identities=12% Similarity=0.102 Sum_probs=150.5
Q ss_pred EEEeeCCCE----EEEEe-CCeEEEEEcCCCccccccCCCC----CCeEE-EEEecCCCcEEEEEe------CCCcEEEE
Q 001248 824 FALSKNDSY----VMSAS-GGKISLFNMMTFKTMATFMPPP----PAATF-LAFHPQDNNIIAIGM------DDSSIQIY 887 (1114)
Q Consensus 824 v~~s~d~~~----l~~~~-dg~i~iwd~~~~~~~~~~~~~~----~~i~~-l~~sp~d~~~la~g~------~dg~v~iw 887 (1114)
++++|.+.. |++++ |+.|.-+|..+|+.+....... ..+++ ..+. ++. +++++ .+|.|+-+
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~--~g~-V~vg~~g~e~g~~g~v~A~ 187 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV--KDK-VIIGSSGAELGVRGYLTAY 187 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--TTE-EEECCBCGGGTCCCEEEEE
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE--CCE-EEEEecccccCCCCeEEEE
Confidence 455443333 66666 8999999999999876644222 01221 1222 444 44454 38999999
Q ss_pred EcccceEEEeecccccC-------------------------------------e-eEEEEcCCCCEEEEEeCC------
Q 001248 888 NVRVDEVKSKLKGHSKR-------------------------------------I-TGLAFSHALNVLVSSGAD------ 923 (1114)
Q Consensus 888 d~~~~~~~~~l~~h~~~-------------------------------------V-~~l~~s~d~~~l~s~s~D------ 923 (1114)
|..+|+.+..+...... + ..+++.++..+++.++.+
T Consensus 188 D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~ 267 (599)
T 1w6s_A 188 DVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNE 267 (599)
T ss_dssp ETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCG
T ss_pred ECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccC
Confidence 99999988766432110 1 134566677777777665
Q ss_pred ----------CcEEEEeCCCCccccccccccCCCC--CCCCCCceEEEEc-cCC---cEEEE-EeCCeEEEEEcCCCcee
Q 001248 924 ----------SQLCVWSSDGWEKQKNRFLQIPTGR--TPTAQSDTRVQFH-QDQ---IHFLV-VHETQLAIFETTKLECV 986 (1114)
Q Consensus 924 ----------~~v~iwd~~~~~~~~~~~~~~~~~~--~~~~~~i~~v~fs-pdg---~~l~~-~~d~~i~iwd~~~~~~~ 986 (1114)
+.|.-+|.++++..- ......... ........-+... .+| ..++. ..+|.+.++|..+|+.+
T Consensus 268 ~~r~gd~~y~~sv~Ald~~TG~~~W-~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 346 (599)
T 1w6s_A 268 TMRPGDNKWTMTIFGRDADTGEAKF-GYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALV 346 (599)
T ss_dssp GGSCSCCTTSSEEEEEETTTCCEEE-EEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred cccCCCccccceEEEEeCCCCceee-EeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEe
Confidence 378999999876532 211111000 0000011122222 567 44554 48899999999999987
Q ss_pred eeeecCC-----------CCcC--------------------------eeEEEECCCCCEEEEEE---------------
Q 001248 987 KQWVPRE-----------SSAP--------------------------ITHATFSCDSQLVYACF--------------- 1014 (1114)
Q Consensus 987 ~~~~~~~-----------h~~~--------------------------v~~l~~s~dg~~l~s~s--------------- 1014 (1114)
....... ...+ -..++++|+..++++..
T Consensus 347 w~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~ 426 (599)
T 1w6s_A 347 SANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYK 426 (599)
T ss_dssp EEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCC
T ss_pred ecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeeccccccc
Confidence 6654221 0111 12467778777665532
Q ss_pred ------------------------cCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCC
Q 001248 1015 ------------------------LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG 1070 (1114)
Q Consensus 1015 ------------------------~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg 1070 (1114)
.+|.|.-||+.+|+.+-+.... .+ . . -.+ ++. .+.+++.++.||
T Consensus 427 ~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~--~~-~--~--~g~--~~t---agg~vf~gt~dg 494 (599)
T 1w6s_A 427 AGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER--FA-V--W--GGT--MAT---AGDLVFYGTLDG 494 (599)
T ss_dssp TTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES--SC-C--C--SBC--EEE---TTTEEEEECTTS
T ss_pred CCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC--CC-c--c--Ccc--eEe---cCCEEEEECCCC
Confidence 3478999999999988776411 11 0 0 011 211 367888899999
Q ss_pred cEEEEeccCCCCcccCCCC
Q 001248 1071 GVHVFEPLESEGKWGVPPP 1089 (1114)
Q Consensus 1071 ~v~vW~i~~~~~~~~~~~~ 1089 (1114)
.|+.||..+|+..|+..-|
T Consensus 495 ~l~A~D~~tG~~lW~~~l~ 513 (599)
T 1w6s_A 495 YLKARDSDTGDLLWKFKIP 513 (599)
T ss_dssp EEEEEETTTCCEEEEEECS
T ss_pred eEEEEECCCCCEEEEeeCC
Confidence 9999999999988877543
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=0.00018 Score=84.59 Aligned_cols=213 Identities=11% Similarity=-0.035 Sum_probs=120.0
Q ss_pred CCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCC------eeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEe
Q 001248 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGG------VNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 505 (1114)
Q Consensus 432 g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~------V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 505 (1114)
+..+.+++.++.|.-+|..+|+.+-....-...... -..++. .+. .++.++.|+.|..+|..+|+.+...
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~--~v~~~t~dg~l~AlD~~TG~~~W~~ 143 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGD--KVFFGTLDASVVALNKNTGKVVWKK 143 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETT--EEEEEETTTEEEEEESSSCCEEEEE
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECC--EEEEEeCCCEEEEEECCCCCEEeee
Confidence 334445555344888999999876533211110000 012222 234 4667778999999999999998776
Q ss_pred ecccc----CEE-EEeeccC-CCce-EEEEEec------CCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEee-
Q 001248 506 EGHEA----PVY-SVCPHHK-ENIQ-FIFSTAL------DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG- 571 (1114)
Q Consensus 506 ~~h~~----~v~-~~~~~~~-~~~~-~l~s~~~------d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~- 571 (1114)
..... .+. +..+... .+++ .++.++. ++.|..+|..+++.+.........+ .|++...+..
T Consensus 144 ~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~-----~p~~~~~~~~~ 218 (582)
T 1flg_A 144 KFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHM-----GRLNGKDSTVT 218 (582)
T ss_dssp ECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCE-----EEETTEEEEES
T ss_pred cCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCcccc-----ccccCcccccc
Confidence 53221 111 0011111 1222 5666543 7899999999988777554321111 1111110000
Q ss_pred ------------------------ecccceeEEEecCCCCEEEEEeC--------------------C----CeEEEEEC
Q 001248 572 ------------------------FRKRSLGVVQFDTTKNRFLAAGD--------------------D----FSIKFWDM 603 (1114)
Q Consensus 572 ------------------------~~~~~v~~~~~~~~~~~l~~~~~--------------------d----g~i~iwd~ 603 (1114)
.....-...+++++.+.++.+.. | +.|..+|.
T Consensus 219 g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~ 298 (582)
T 1flg_A 219 GDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDP 298 (582)
T ss_dssp SCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECT
T ss_pred cccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeC
Confidence 00011123567777777777663 2 68999999
Q ss_pred CCcceEEEeccCCCC----CCcCe-EEEc---CCCC---EEEEEeCCCcEEEEEccCCccc
Q 001248 604 DSVQLLTSIDADGGL----PASPR-IRFN---KDGC---LLAVSTNDNGIKILATSDGIRL 653 (1114)
Q Consensus 604 ~~~~~~~~~~~~~~~----~~v~~-~~~s---~d~~---~l~~~~~dg~i~iwd~~~~~~~ 653 (1114)
.+|+.+..+....+. ..+.. +.+. .+|+ .++.++.+|.++++|..+++..
T Consensus 299 ~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 359 (582)
T 1flg_A 299 SSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQ 359 (582)
T ss_dssp TTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred CCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEe
Confidence 999999888643221 01111 2222 4674 7888999999999999999443
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.40 E-value=4.1e-05 Score=93.78 Aligned_cols=159 Identities=12% Similarity=0.088 Sum_probs=94.6
Q ss_pred CceEEEEc-CCCCeEEEEEecCC----cEEEEEcCCc-ceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCC
Q 001248 360 SPMSMDFH-PVQQTLLLVGTNVG----DIGLWEVGSR-ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 433 (1114)
Q Consensus 360 ~v~~v~~s-pdg~~ll~tg~~dg----~v~iwd~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 433 (1114)
.+...+|| |||++|+++.+.+| +|+++|+.++ +.+.. .+. .....++|||||+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~------------------~~~---~~~~~~~WspDg~ 233 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD------------------KVS---GTNGEIVWGPDHT 233 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC------------------CEE---EECSCCEECSSTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc------------------ccc---CceeeEEEecCCC
Confidence 57889999 99998665655444 4999999988 63210 011 1235689999999
Q ss_pred eEEEEeCC-----CeEEEEEccCCceeeeeEeec-cccCCeeEEEecCCCCeeEEEEec-CCCCEEEEeCCCCc-ce--e
Q 001248 434 LFGVAYSR-----HIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCG-DDKTIKVWDATNGA-KQ--Y 503 (1114)
Q Consensus 434 ~las~~~d-----g~i~iwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~d~~~~~l~s~~-~d~~i~iwd~~~~~-~~--~ 503 (1114)
.|+....| ..|.++++.++..... ..+. .+......+.|||||+.+++.+.. ....|.++|+.++. .. .
T Consensus 234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~-lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~ 312 (751)
T 2xe4_A 234 SLFYVTKDETLRENKVWRHVMGKLQSEDV-CLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE 312 (751)
T ss_dssp EEEEEEECTTCCEEEEEEEETTSCGGGCE-EEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE
T ss_pred EEEEEEECCCCCCCEEEEEECCCCchhcE-EEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE
Confidence 98887665 3588888877642211 1222 223346788999999974333332 23458889988763 22 3
Q ss_pred Ee-eccccCEEEEeeccCCCceEEEEEecC----CeEEEEEcCC
Q 001248 504 IF-EGHEAPVYSVCPHHKENIQFIFSTALD----GKIKAWLYDN 542 (1114)
Q Consensus 504 ~~-~~h~~~v~~~~~~~~~~~~~l~s~~~d----~~i~~wd~~~ 542 (1114)
.+ .+......++.|+. ++.+++....+ ..|..+|+.+
T Consensus 313 ~l~~~~~~~~~s~~~~~--g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 313 IVRPREKGVRYDVQMHG--TSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp ESSCCCTTCCEEEEEET--TTEEEEEECTTTCTTCEEEEEETTS
T ss_pred EeecCCCCceEEEeeee--CCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 33 33344555554322 22344444433 2566666653
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.39 E-value=5.6e-05 Score=81.51 Aligned_cols=231 Identities=10% Similarity=0.036 Sum_probs=138.1
Q ss_pred CCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEEcccceEE
Q 001248 819 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVK 895 (1114)
Q Consensus 819 ~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg--~v~iwd~~~~~~~ 895 (1114)
.....++++++++++++.. ++.|..||..+. ....+. .......+++++ +++++++..... .|..+|..+++..
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~~ 108 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVE 108 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeEE
Confidence 4567899999998766664 789999998653 332222 235688999999 787666554332 4777777777643
Q ss_pred Eeec-ccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccc---cccc--cCCCCCCCCCCceEEEEccCCcEEEE
Q 001248 896 SKLK-GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN---RFLQ--IPTGRTPTAQSDTRVQFHQDQIHFLV 969 (1114)
Q Consensus 896 ~~l~-~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~---~~~~--~~~~~~~~~~~i~~v~fspdg~~l~~ 969 (1114)
.... ........++..+++..+++-..++.|.++|..++..... ..+. ...+.. .....+ ++|+++|.+
T Consensus 109 ~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~---~~pngi--s~dg~~lyv 183 (306)
T 2p4o_A 109 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF---PAANGL--KRFGNFLYV 183 (306)
T ss_dssp EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS---CSEEEE--EEETTEEEE
T ss_pred EEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCC---CcCCCc--CcCCCEEEE
Confidence 2221 1122335566666665566555688888888765321100 0000 000111 123445 899987777
Q ss_pred E--eCCeEEEEEcCC-Cce--eeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCC
Q 001248 970 V--HETQLAIFETTK-LEC--VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVS 1044 (1114)
Q Consensus 970 ~--~d~~i~iwd~~~-~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~ 1044 (1114)
+ ..+.|..|++.. ++. ...+.. ......++++++|++.++....+.|.++|.. |+........ .+
T Consensus 184 ~d~~~~~I~~~~~~~~g~~~~~~~~~~---~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~--~~---- 253 (306)
T 2p4o_A 184 SNTEKMLLLRIPVDSTDKPGEPEIFVE---QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE--QG---- 253 (306)
T ss_dssp EETTTTEEEEEEBCTTSCBCCCEEEEE---SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG--GT----
T ss_pred EeCCCCEEEEEEeCCCCCCCccEEEec---cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc--cc----
Confidence 4 567899999875 322 112211 1356779999999877766667899999975 6653221100 11
Q ss_pred CCCccceEEEec---CCCCCeEEEEeCCC
Q 001248 1045 SSNVHPLVIAAH---PQEPNEFALGLSDG 1070 (1114)
Q Consensus 1045 ~~~v~~~~~~~~---~~d~~~l~s~~~Dg 1070 (1114)
...+.+++|. | |++.|++++..+
T Consensus 254 --~~~p~~~a~~g~~~-d~~~LyVt~~~~ 279 (306)
T 2p4o_A 254 --VIGSTAVAFGQTEG-DCTAIYVVTNGG 279 (306)
T ss_dssp --CTTEEEEEECCSTT-TTTEEEEEECTT
T ss_pred --cCCceEEEEecccC-CCCEEEEECCCC
Confidence 1335689998 5 566666665443
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.39 E-value=0.00014 Score=78.48 Aligned_cols=242 Identities=13% Similarity=0.069 Sum_probs=140.8
Q ss_pred CcceeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEE
Q 001248 348 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 427 (1114)
Q Consensus 348 ~~~~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 427 (1114)
+.++...+........++|+++|+ |+++-..++.|..||..++.... +. ....+..++
T Consensus 21 ~~~~~~~~p~~~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~~~~~------~~---------------~~~~p~gia 78 (306)
T 2p4o_A 21 PAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQQIH------AT---------------VEGKVSGLA 78 (306)
T ss_dssp CEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCCEEEE------EE---------------CSSEEEEEE
T ss_pred CceEeEeCCCCCCcceEEECCCCC-EEEEeCCCCeEEEECCCCceEEE------Ee---------------CCCCceeEE
Confidence 445556665557788999999998 67777678999999987542211 11 123688999
Q ss_pred EcCCCCeEEEEeCC-C-eEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcc-eeE
Q 001248 428 WSPDGSLFGVAYSR-H-IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK-QYI 504 (1114)
Q Consensus 428 ~spdg~~las~~~d-g-~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~~~ 504 (1114)
++++|+++++.... + .|..+|..+++.. ....+. .......++..+++. .+++...++.|.++|..+++. +..
T Consensus 79 ~~~dG~l~vad~~~~~~~v~~~d~~~g~~~-~~~~~~-~~~~~~g~~~~~~~~--~~v~d~~~g~i~~~d~~~~~~~v~~ 154 (306)
T 2p4o_A 79 FTSNGDLVATGWNADSIPVVSLVKSDGTVE-TLLTLP-DAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIWL 154 (306)
T ss_dssp ECTTSCEEEEEECTTSCEEEEEECTTSCEE-EEEECT-TCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EcCCCcEEEEeccCCcceEEEEcCCCCeEE-EEEeCC-CccccCcccccCCCc--EEEEECCCCeEEEEeCCCCcEeEEE
Confidence 99999976665433 2 4666777777633 222221 122334556555554 556666688899999765421 111
Q ss_pred ee---------ccccCEEEEeeccCCCce-EEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecc
Q 001248 505 FE---------GHEAPVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1114)
Q Consensus 505 ~~---------~h~~~v~~~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~ 574 (1114)
.. +.-.....+ ++ ++. +.++-...+.|..+++....... ...+.. .+
T Consensus 155 ~~~~~~~~~~~~~~~~pngi--s~--dg~~lyv~d~~~~~I~~~~~~~~g~~~-----~~~~~~-~~------------- 211 (306)
T 2p4o_A 155 EHPMLARSNSESVFPAANGL--KR--FGNFLYVSNTEKMLLLRIPVDSTDKPG-----EPEIFV-EQ------------- 211 (306)
T ss_dssp ECGGGSCSSTTCCSCSEEEE--EE--ETTEEEEEETTTTEEEEEEBCTTSCBC-----CCEEEE-ES-------------
T ss_pred ECCccccccccCCCCcCCCc--Cc--CCCEEEEEeCCCCEEEEEEeCCCCCCC-----ccEEEe-cc-------------
Confidence 11 111223444 23 333 45555667889999987421110 000000 00
Q ss_pred cceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEc---CCCCEEEEEeCC
Q 001248 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN---KDGCLLAVSTND 639 (1114)
Q Consensus 575 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s---~d~~~l~~~~~d 639 (1114)
....-++++++|+++++....+.|.+++.. ++...............+++|. ++++.|++.+..
T Consensus 212 ~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 212 TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence 012235677777777776678899999975 6553322212122357889998 888877776654
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=0.00011 Score=80.08 Aligned_cols=257 Identities=11% Similarity=0.107 Sum_probs=141.5
Q ss_pred CCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeee--eccCCCCcccccccccCCCCCeeEEEEcC-CCCeE
Q 001248 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKV--WDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLF 435 (1114)
Q Consensus 359 ~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~--~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l 435 (1114)
....+++|.++|+ ++.++..++.|..||..+++.... .... +....+...... ........+..+++.+ +|+ |
T Consensus 19 ~~p~~i~~d~~g~-~l~v~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~-~~~~~~~~p~gi~~~~~~g~-l 94 (322)
T 2fp8_A 19 YAPNSFTFDSTNK-GFYTSVQDGRVIKYEGPNSGFVDF-AYASPYWNKAFCENSTDA-EKRPLCGRTYDISYNLQNNQ-L 94 (322)
T ss_dssp SCCCCEECCTTCS-SEEEECTTSEEEEECCTTTCEEEE-EESCTTCCHHHHTTCCCG-GGHHHHCCEEEEEEETTTTE-E
T ss_pred CCceEEEEcCCCC-EEEEEcCCCeEEEECCCCCceEEE-ecccccccccccccccch-hccccCCCCceEEEcCCCCc-E
Confidence 4567899999998 477888899999999886543221 0000 000000000000 0000113578999998 565 4
Q ss_pred EEEeCCCeEEEEEccCCceeeeeEe-ecc-ccCCeeEEEecC-CCCeeEEEEecC-----------------CCCEEEEe
Q 001248 436 GVAYSRHIVQIYSYHGGDEVRQHLE-IDA-HVGGVNDIAFSH-PNKQLCVITCGD-----------------DKTIKVWD 495 (1114)
Q Consensus 436 as~~~dg~i~iwd~~~~~~~~~~~~-l~~-h~~~V~~v~~s~-d~~~~~l~s~~~-----------------d~~i~iwd 495 (1114)
.++...+.|..+|..++. +..... ..+ .......+++.+ +|. +.++... ++.|..||
T Consensus 95 ~v~d~~~~i~~~d~~~g~-~~~~~~~~~~~~~~~p~~i~~d~~~G~--l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d 171 (322)
T 2fp8_A 95 YIVDCYYHLSVVGSEGGH-ATQLATSVDGVPFKWLYAVTVDQRTGI--VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD 171 (322)
T ss_dssp EEEETTTEEEEECTTCEE-CEEEESEETTEECSCEEEEEECTTTCC--EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred EEEECCCCEEEEeCCCCE-EEEecccCCCCcccccceEEEecCCCE--EEEECCcccccccccceehcccCCCceEEEEe
Confidence 445444558888877553 221111 111 123478899999 887 4454322 36788899
Q ss_pred CCCCcceeEeeccccCEEEEeeccCCCceEEE-EEecCCeEEEEEcCCCCC--eeeecCCCCeeEEEEEecCCCeEEeee
Q 001248 496 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIF-STALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQGF 572 (1114)
Q Consensus 496 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~d~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~g~~~~~~~ 572 (1114)
..+++...... .......++++ ++++.|+ +-...+.|..|++..... ...+....
T Consensus 172 ~~~~~~~~~~~-~~~~p~gia~~--~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~------------------- 229 (322)
T 2fp8_A 172 PSTKETTLLLK-ELHVPGGAEVS--ADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIP------------------- 229 (322)
T ss_dssp TTTTEEEEEEE-EESCCCEEEEC--TTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECS-------------------
T ss_pred CCCCEEEEecc-CCccCcceEEC--CCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCC-------------------
Confidence 77665433222 12334556764 4555554 445678999999875211 00000000
Q ss_pred cccceeEEEecCCCCEEEEEeC----------CCeEEEEECCCcceEEEeccCCC--CCCcCeEEEcCCCCEEEEEeCCC
Q 001248 573 RKRSLGVVQFDTTKNRFLAAGD----------DFSIKFWDMDSVQLLTSIDADGG--LPASPRIRFNKDGCLLAVSTNDN 640 (1114)
Q Consensus 573 ~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~s~d~~~l~~~~~dg 640 (1114)
. ..-++++++|++.++... .+.|..+|. .++.+..+..... ...+.++++ .+++++++....+
T Consensus 230 --g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~ 304 (322)
T 2fp8_A 230 --N-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHG 304 (322)
T ss_dssp --S-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCS
T ss_pred --C-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCC
Confidence 1 223556666665555443 467888886 4677766654432 234666766 4666666666778
Q ss_pred cEEEEEccC
Q 001248 641 GIKILATSD 649 (1114)
Q Consensus 641 ~i~iwd~~~ 649 (1114)
.|..+++..
T Consensus 305 ~i~~~~~~~ 313 (322)
T 2fp8_A 305 SVGILVYDK 313 (322)
T ss_dssp EEEEEEC--
T ss_pred ceEEEeccc
Confidence 898888754
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.36 E-value=3.7e-05 Score=77.30 Aligned_cols=187 Identities=9% Similarity=0.086 Sum_probs=125.2
Q ss_pred CCccEEEEeeCCCEEEEEe-C--CeEEEEEcCCCccccccCCCCCC-eEEEEEecCCCcEEEEEeCCCcEEEEEcccceE
Q 001248 819 EAVPCFALSKNDSYVMSAS-G--GKISLFNMMTFKTMATFMPPPPA-ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV 894 (1114)
Q Consensus 819 ~~v~~v~~s~d~~~l~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~-i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~ 894 (1114)
.-...+.|+. +.+..+.+ + +.|+.+|+.+++.+..+...... -..+++. ++++......++.+.+||..+.+.
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~ 97 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLTP 97 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCcE
Confidence 3455788876 44444444 3 48999999999998877543321 1334443 456666677899999999999999
Q ss_pred EEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCC
Q 001248 895 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HET 973 (1114)
Q Consensus 895 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~ 973 (1114)
+.++..... =.+++ +|++.|+.+..++.|.++|..+.+......+.. .+.. ...+..+.+. +|+..+.. .+.
T Consensus 98 ~~ti~~~~~-Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~-~g~~--~~~lNeLe~~-~G~lyanvw~s~ 170 (243)
T 3mbr_X 98 RARFRYPGE-GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA-GGRP--LDNLNELEWV-NGELLANVWLTS 170 (243)
T ss_dssp EEEEECSSC-CCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEE-TTEE--CCCEEEEEEE-TTEEEEEETTTT
T ss_pred EEEEeCCCC-ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc-CCcc--cccceeeEEe-CCEEEEEECCCC
Confidence 998875332 23454 567777766778899999999866543322221 1110 0133455554 66655554 677
Q ss_pred eEEEEEcCCCceeeeeecCC-----------CCcCeeEEEECCCCCEEEEEEc
Q 001248 974 QLAIFETTKLECVKQWVPRE-----------SSAPITHATFSCDSQLVYACFL 1015 (1114)
Q Consensus 974 ~i~iwd~~~~~~~~~~~~~~-----------h~~~v~~l~~s~dg~~l~s~s~ 1015 (1114)
.|.+.|.++++.+..+...+ -..-...||++|+++.|++.+.
T Consensus 171 ~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 171 RIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred eEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 99999999999988876431 1235688999999888777663
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.35 E-value=2.9e-05 Score=95.13 Aligned_cols=195 Identities=12% Similarity=0.056 Sum_probs=110.8
Q ss_pred CccEEEEe-eCCCEEEEEe--CC----eEEEEEcCCC-ccccc-cCCCCCCeEEEEEecCCCcEEEEEeCC-----CcEE
Q 001248 820 AVPCFALS-KNDSYVMSAS--GG----KISLFNMMTF-KTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDD-----SSIQ 885 (1114)
Q Consensus 820 ~v~~v~~s-~d~~~l~~~~--dg----~i~iwd~~~~-~~~~~-~~~~~~~i~~l~~sp~d~~~la~g~~d-----g~v~ 885 (1114)
.+...+|| |||++||.+. +| +|+++|+.++ +.+.. +. .....++|+| |++.|+....| ..|+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~Wsp-Dg~~l~y~~~d~~~~~~~v~ 250 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGP-DHTSLFYVTKDETLRENKVW 250 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECS-STTEEEEEEECTTCCEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEec-CCCEEEEEEECCCCCCCEEE
Confidence 56788999 9999999765 22 4999999988 63211 11 1234688999 77777666654 3688
Q ss_pred EEEcccceE--EEeec-ccccCeeEEEEcCCCCEEEEEeC---CCcEEEEeCCCCccccccccccCCCCCCCCCCceEEE
Q 001248 886 IYNVRVDEV--KSKLK-GHSKRITGLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 959 (1114)
Q Consensus 886 iwd~~~~~~--~~~l~-~h~~~V~~l~~s~d~~~l~s~s~---D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 959 (1114)
++++.+++. ...+. .+.....++.|||||++|+..+. ...|.++|+.++.... .......+.. .....+.
T Consensus 251 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~-~~~~l~~~~~---~~~~s~~ 326 (751)
T 2xe4_A 251 RHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHN-TLEIVRPREK---GVRYDVQ 326 (751)
T ss_dssp EEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCC-CEEESSCCCT---TCCEEEE
T ss_pred EEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCc-eeEEeecCCC---CceEEEe
Confidence 888877531 12222 22344678899999999886653 3457888887742111 0011111111 2334444
Q ss_pred EccCCcEEEE-EeC-----CeEEEEEcCCCceeee-eecCCCCcCeeEEEECCCCCEEEEEEcCCe--EEEEEc
Q 001248 960 FHQDQIHFLV-VHE-----TQLAIFETTKLECVKQ-WVPRESSAPITHATFSCDSQLVYACFLDAT--VCVFSA 1024 (1114)
Q Consensus 960 fspdg~~l~~-~~d-----~~i~iwd~~~~~~~~~-~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~--I~vwd~ 1024 (1114)
|+. |..|+. +.. ..|..+++.+...... +........+..+.+. ++.++++...|+. |+++++
T Consensus 327 ~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 327 MHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred eee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 443 555444 432 2577778765322222 2221212245556654 3344566777776 555564
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.30 E-value=4.9e-05 Score=76.37 Aligned_cols=201 Identities=11% Similarity=0.087 Sum_probs=128.3
Q ss_pred CeEEEEEecCCCcEEEEEeCCC--cEEEEEcccceEEEeecccccCeeEEEEcCCCCEE-EEEeCCCcEEEEeCCCCccc
Q 001248 861 AATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVL-VSSGADSQLCVWSSDGWEKQ 937 (1114)
Q Consensus 861 ~i~~l~~sp~d~~~la~g~~dg--~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l-~s~s~D~~v~iwd~~~~~~~ 937 (1114)
-...+.|++ +.++.+.+.+| .|+.+|+.+++.+..+.-... ........++..| +..-.++.+.+||..+.+..
T Consensus 22 ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~ 98 (243)
T 3mbr_X 22 FTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPR 98 (243)
T ss_dssp CEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSEEEEEETTTTEEE
T ss_pred ccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEE
Confidence 366899985 56777766654 899999999998887754322 3223222234444 44557889999999986654
Q ss_pred cccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCeEEEEEcCCCceeeeeecCCCCc---CeeEEEECCCCCEEEEE
Q 001248 938 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSA---PITHATFSCDSQLVYAC 1013 (1114)
Q Consensus 938 ~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~---~v~~l~~s~dg~~l~s~ 1013 (1114)
...... + ....+++|+..|+++ .++.|.++|..+.+.++.+....+.. .+..+.+. +|+..+..
T Consensus 99 ~ti~~~---~--------~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanv 166 (243)
T 3mbr_X 99 ARFRYP---G--------EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANV 166 (243)
T ss_dssp EEEECS---S--------CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred EEEeCC---C--------CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEE
Confidence 322211 1 223445677777664 57789999999999988887644433 34455654 66655444
Q ss_pred EcCCeEEEEEcCCCeeeEEeCCCcccCCCCC---CCCccceEEEecCCCCCeEEEEeCCCcEEEEe
Q 001248 1014 FLDATVCVFSAANLKLRCRINPSAYLPAGVS---SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFE 1076 (1114)
Q Consensus 1014 s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~ 1076 (1114)
-.+..|.+.|..+|+.+..+......+.... ...-.+-.|+++|+.+++++||-.=-.++--.
T Consensus 167 w~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v~ 232 (243)
T 3mbr_X 167 WLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEIR 232 (243)
T ss_dssp TTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred CCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEEE
Confidence 4678999999999999999885543322100 11122348999996556666664434443333
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.26 E-value=0.00024 Score=72.68 Aligned_cols=218 Identities=11% Similarity=0.101 Sum_probs=133.6
Q ss_pred ccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEee--cccccCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001248 854 TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL--KGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 931 (1114)
Q Consensus 854 ~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l--~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~ 931 (1114)
.+.+-...+..++++|+++.++++...++.|...|.. ++.+..+ .+. ...-+|++.+++.++++.-.++.+.++++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~-~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFV-KDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSC-SSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCC-CChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 3445556799999999556777788899999999998 8877766 332 45778999999887777667788999988
Q ss_pred CCCcccc-ccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCeEEEEEcCC---Cceeeee-----ecCCCCcCeeEE
Q 001248 932 DGWEKQK-NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK---LECVKQW-----VPRESSAPITHA 1001 (1114)
Q Consensus 932 ~~~~~~~-~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~i~iwd~~~---~~~~~~~-----~~~~h~~~v~~l 1001 (1114)
....... .......-+..+.......++|+|+++.|.++ ......+|.... ...+... ....+...+.++
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 7644211 11111111111223467899999999777764 333344444431 1111111 111234567899
Q ss_pred EECCCCCEE-EEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEec
Q 001248 1002 TFSCDSQLV-YACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1077 (1114)
Q Consensus 1002 ~~s~dg~~l-~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i 1077 (1114)
++.|....| +.....+.+.++|.. |+.+..+....... +-......+-.|+|.+ +|+ |...++-+-++++.-
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~-~l~~~~~qpEGia~d~-~G~-lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSR-GLSHNIKQAEGVAMDA-SGN-IYIVSEPNRFYRFTP 251 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGG-GCSSCCCSEEEEEECT-TCC-EEEEETTTEEEEEEC
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccC-CcccccCCCCeeEECC-CCC-EEEEcCCceEEEEEe
Confidence 999966654 555566789999965 55666655221110 0001113455899999 576 555577776665543
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00056 Score=69.90 Aligned_cols=164 Identities=10% Similarity=0.076 Sum_probs=107.0
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
-.+.+..++|+|++..|.++...++.|...|.. ++.+.... +.+. .....|++.+++.+++
T Consensus 25 ~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------l~g~-~D~EGIa~~~~g~~~v 85 (255)
T 3qqz_A 25 ITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------LDFV-KDLETIEYIGDNQFVI 85 (255)
T ss_dssp CCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------CSSC-SSEEEEEECSTTEEEE
T ss_pred cccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------cCCC-CChHHeEEeCCCEEEE
Confidence 446799999999988778878889999999998 77665322 2222 3577889999998877
Q ss_pred EEeCCCeEEEEEccCCceee--eeEee----ccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCC---CCcceeEee-
Q 001248 437 VAYSRHIVQIYSYHGGDEVR--QHLEI----DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT---NGAKQYIFE- 506 (1114)
Q Consensus 437 s~~~dg~i~iwd~~~~~~~~--~~~~l----~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~---~~~~~~~~~- 506 (1114)
+.-.++.+.++++.....+. ....+ ...+.....++|+|+++.+ +++.......+|.+. .+..+..+.
T Consensus 86 s~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L--~va~E~~p~~i~~~~g~~~~~~l~i~~~ 163 (255)
T 3qqz_A 86 SDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTF--WFFKEKNPIEVYKVNGLLSSNELHISKD 163 (255)
T ss_dssp EETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEE--EEEEESSSEEEEEEESTTCSSCCEEEEC
T ss_pred EECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEE--EEEECcCCceEEEEcccccCCceeeecc
Confidence 76567889999887654322 11111 1234567899999999853 333333334444433 111222221
Q ss_pred ------ccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCC
Q 001248 507 ------GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 542 (1114)
Q Consensus 507 ------~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 542 (1114)
.+...+.++++++.. +.+++....++.+..+|...
T Consensus 164 ~~~~~~~~~~d~S~l~~dp~t-g~lliLS~~s~~L~~~d~~g 204 (255)
T 3qqz_A 164 KALQRQFTLDDVSGAEFNQQK-NTLLVLSHESRALQEVTLVG 204 (255)
T ss_dssp HHHHHTCCSSCCCEEEEETTT-TEEEEEETTTTEEEEECTTC
T ss_pred hhhccccccCCceeEEEcCCC-CeEEEEECCCCeEEEEcCCC
Confidence 123456788887754 46777777788888888763
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.23 E-value=0.0013 Score=71.24 Aligned_cols=234 Identities=9% Similarity=0.017 Sum_probs=132.2
Q ss_pred CCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccC---CCCCCeEEEEEecCCCcEEEEEeCCCcEEE-EEc-ccc
Q 001248 818 EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFM---PPPPAATFLAFHPQDNNIIAIGMDDSSIQI-YNV-RVD 892 (1114)
Q Consensus 818 ~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~l~~sp~d~~~la~g~~dg~v~i-wd~-~~~ 892 (1114)
...+.++.+++ +..++++..+.|.. ....++.-.... .+...+..+.+.+ ++.+++++. +|.|+. .|- .+.
T Consensus 79 ~~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~-~g~v~~S~DgG~tW 154 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG-NGSAEMITN-VGAIYRTKDSGKNW 154 (327)
T ss_dssp CCEEEEEEEET-TEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE-TTEEEEEET-TCCEEEESSTTSSE
T ss_pred CccEEEEEecC-CeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC-CCCEEEEeC-CccEEEEcCCCCCC
Confidence 44678888875 55566665775544 222233322221 2334577888877 677776654 565432 221 122
Q ss_pred eEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeC
Q 001248 893 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE 972 (1114)
Q Consensus 893 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d 972 (1114)
+.+. .++...+.++++.+++.+++.+...+..+-+|-. ++ .+..+.... ...+..+++.+++..++++.+
T Consensus 155 ~~~~--~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g-G~--tW~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~ 224 (327)
T 2xbg_A 155 QALV--QEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG-QT--AWEPHNRTT-----SRRLHNMGFTPDGRLWMIVNG 224 (327)
T ss_dssp EEEE--CSCCCCEEEEEECTTSCEEEEETTSSEEEEECTT-CS--SCEEEECCS-----SSCEEEEEECTTSCEEEEETT
T ss_pred EEee--cCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCC-CC--ceeECCCCC-----CCccceeEECCCCCEEEEeCC
Confidence 3222 3455678999999998888766544333333321 11 111221111 135788999999998888888
Q ss_pred CeEEEEEcCCCceeeeeecC--CCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccc
Q 001248 973 TQLAIFETTKLECVKQWVPR--ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHP 1050 (1114)
Q Consensus 973 ~~i~iwd~~~~~~~~~~~~~--~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1050 (1114)
+.+.+.+...++.-...... .+...+.++++.+++..++++ .+|.| .+..+.|+.-..+......+. .++
T Consensus 225 G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~-----~~~- 296 (327)
T 2xbg_A 225 GKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPS-----NFY- 296 (327)
T ss_dssp TEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSS-----CCC-
T ss_pred ceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCC-----CeE-
Confidence 88777643334332222211 123468899999988877765 47777 455666655544331101111 144
Q ss_pred eEEEecCCCCCeEEEEeCCCcEEEEe
Q 001248 1051 LVIAAHPQEPNEFALGLSDGGVHVFE 1076 (1114)
Q Consensus 1051 ~~~~~~~~d~~~l~s~~~Dg~v~vW~ 1076 (1114)
.+.|.+ +..+++++.+|.|.-++
T Consensus 297 -~v~~~~--~~~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 297 -KILFFS--PDQGFILGQKGILLRYV 319 (327)
T ss_dssp -EEEEEE--TTEEEEECSTTEEEEEC
T ss_pred -EEEEEC--CCceEEEcCCceEEEEc
Confidence 677764 35677778899876665
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00047 Score=74.41 Aligned_cols=207 Identities=6% Similarity=-0.013 Sum_probs=130.0
Q ss_pred CCCccEEEEeeCCCEEEEEe--CCeEEEEEcCC---Ccccc-ccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc
Q 001248 818 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMT---FKTMA-TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 891 (1114)
Q Consensus 818 ~~~v~~v~~s~d~~~l~~~~--dg~i~iwd~~~---~~~~~-~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~ 891 (1114)
...+..++|++++..|..+. ++.|..+++.+ +.... .+...-.....+++++.++++.++-..++.|.++++..
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 34577899998777777665 68999999876 12222 22222245678999874566666666788999999875
Q ss_pred ceEEEeecccccCeeEEEEcCCCCEEEEEeCC--CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE
Q 001248 892 DEVKSKLKGHSKRITGLAFSHALNVLVSSGAD--SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 969 (1114)
Q Consensus 892 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~ 969 (1114)
......+........++++.|++..|..+... +.|...+++...... ... .. ......+++++++..|..
T Consensus 109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~--~~~-~~-----~~~P~gla~d~~~~~lY~ 180 (316)
T 1ijq_A 109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVT-EN-----IQWPNGITLDLLSGRLYW 180 (316)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE--EEC-SS-----CSCEEEEEEETTTTEEEE
T ss_pred CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEE--EEE-CC-----CCCceEEEEeccCCEEEE
Confidence 43332333334567899999877766655543 678888887532211 111 11 124589999998777766
Q ss_pred E--eCCeEEEEEcCCCceeeeeec-CCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeC
Q 001248 970 V--HETQLAIFETTKLECVKQWVP-RESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 970 ~--~d~~i~iwd~~~~~~~~~~~~-~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
+ ..+.|..+|..... .+.+.. .........|++. .+.++++-...+.|..++..+|+.+..+.
T Consensus 181 ~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 181 VDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 4 56789999987433 333321 1223456788884 34444555567889999988887666554
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00076 Score=73.86 Aligned_cols=238 Identities=12% Similarity=0.057 Sum_probs=147.8
Q ss_pred CccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeec
Q 001248 820 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK 899 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~ 899 (1114)
..+|.+..+ ..+|+.+....|+..++........+. ....+..++|++.++.++.+-...+.|+.+++..+.....+.
T Consensus 35 ~~~C~~~~~-~~~ll~~~~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 112 (349)
T 3v64_C 35 RRSCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 112 (349)
T ss_dssp SSCEEESSS-CCEEEEECBSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred CCccccccc-CceeEeecccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe
Confidence 345555555 345666666678888887654433333 334588999998556666666677899999988765333333
Q ss_pred ccccCeeEEEEcCCCCEE-EEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE--eC-CeE
Q 001248 900 GHSKRITGLAFSHALNVL-VSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE-TQL 975 (1114)
Q Consensus 900 ~h~~~V~~l~~s~d~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~--~d-~~i 975 (1114)
.......++++.+.+..| ++-...+.|.+.+++...... .. ..+ ......+++.|.+..|..+ .. +.|
T Consensus 113 ~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~--l~--~~~----l~~P~~iavdp~~g~ly~td~~~~~~I 184 (349)
T 3v64_C 113 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV--LL--WQS----LEKPRAIALHPMEGTIYWTDWGNTPRI 184 (349)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE--EE--CTT----CSCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE--EE--eCC----CCCcceEEEecCcCeEEEeccCCCCEE
Confidence 333456789998755554 555567889999988643211 11 111 1245899999976666653 34 678
Q ss_pred EEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEE
Q 001248 976 AIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIA 1054 (1114)
Q Consensus 976 ~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s-~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 1054 (1114)
..+++..... ..+.. ..-.....|+++|++..|+.+. ..+.|..+|++.......+... .-.|..++
T Consensus 185 ~r~~~dG~~~-~~~~~-~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~----------~~~P~gia 252 (349)
T 3v64_C 185 EASSMDGSGR-RIIAD-THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG----------LPHPFAIT 252 (349)
T ss_dssp EEEETTSCSC-EESCC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS----------CSSEEEEE
T ss_pred EEEeCCCCCc-EEEEE-CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC----------CCCceEEE
Confidence 8888764332 22221 2244678999999888776665 4578999998754333222211 12344666
Q ss_pred ecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1055 AHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1055 ~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
+. ++.+.++-...+.|...+..+|+
T Consensus 253 v~--~~~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 253 VF--EDSLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp EE--TTEEEEEETTTTEEEEEETTTCC
T ss_pred EE--CCEEEEecCCCCeEEEEEccCCC
Confidence 63 35566666667888888866666
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00052 Score=76.41 Aligned_cols=236 Identities=12% Similarity=0.054 Sum_probs=147.7
Q ss_pred cEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeeccc
Q 001248 822 PCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH 901 (1114)
Q Consensus 822 ~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h 901 (1114)
.|.+..+ ..+|+.+....|+.+++.......... ....+..++|++.++.++.+-...+.|+.+++..+.....+...
T Consensus 80 ~C~~~~~-~~~l~~~~~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~ 157 (386)
T 3v65_B 80 SCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG 157 (386)
T ss_dssp CEEECSS-CCEEEEECBSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS
T ss_pred eECCccc-cceeEeecCccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC
Confidence 3444444 445666666778989987655443333 34458899999856666666667789999998876543333333
Q ss_pred ccCeeEEEEcCCCCEE-EEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE--eC-CeEEE
Q 001248 902 SKRITGLAFSHALNVL-VSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE-TQLAI 977 (1114)
Q Consensus 902 ~~~V~~l~~s~d~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~--~d-~~i~i 977 (1114)
.....++++.+.+..| ++-...+.|.+.+++...... .+ ..+ ......+++.|++..|..+ .. +.|..
T Consensus 158 ~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~--l~--~~~----l~~P~giavdp~~g~ly~td~~~~~~I~r 229 (386)
T 3v65_B 158 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV--LL--WQS----LEKPRAIALHPMEGTIYWTDWGNTPRIEA 229 (386)
T ss_dssp CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE--EE--CSS----CSCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE--ee--cCC----CCCCcEEEEEcCCCeEEEeccCCCCEEEE
Confidence 3456789998765554 555556788888887633211 11 111 1245899999977766664 33 67888
Q ss_pred EEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEec
Q 001248 978 FETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAH 1056 (1114)
Q Consensus 978 wd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s-~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 1056 (1114)
++....... .+.. ..-.....|+|+|++..|+.+. ..+.|..+|++.......+... .-.|..+++.
T Consensus 230 ~~~dG~~~~-~~~~-~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~----------~~~P~giav~ 297 (386)
T 3v65_B 230 SSMDGSGRR-IIAD-THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG----------LPHPFAITVF 297 (386)
T ss_dssp EETTSCSCE-EEEC-SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS----------CSSEEEEEEE
T ss_pred EeCCCCCcE-EEEE-CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC----------CCCceEEEEE
Confidence 887654332 2221 2244678999998888776665 4578999998754333222211 1234467664
Q ss_pred CCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1057 PQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1057 ~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
++.+.++-...+.|..++..+|+
T Consensus 298 --~~~ly~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 298 --EDSLYWTDWHTKSINSANKFTGK 320 (386)
T ss_dssp --TTEEEEEETTTTEEEEEETTTCC
T ss_pred --CCEEEEeeCCCCeEEEEECCCCc
Confidence 35566666677888888866666
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00033 Score=79.10 Aligned_cols=249 Identities=8% Similarity=0.013 Sum_probs=144.2
Q ss_pred CccEEEEeeC--CCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCC---C-cEEEEEcccc
Q 001248 820 AVPCFALSKN--DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD---S-SIQIYNVRVD 892 (1114)
Q Consensus 820 ~v~~v~~s~d--~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~d---g-~v~iwd~~~~ 892 (1114)
....++++++ +..|.++. .+.|+.+|..++..... .........++|++ +++++++.... . .+..++...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC
Confidence 4678999984 44455554 58899999977665433 33455689999999 77755544321 1 2333333322
Q ss_pred eE-EEeecccccCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE
Q 001248 893 EV-KSKLKGHSKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 970 (1114)
Q Consensus 893 ~~-~~~l~~h~~~V~~l~~s~-d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~ 970 (1114)
.. ...+. .......+++.| +|.++++-..++.|+.++..++..... ...... . .....++|+|+|++|.++
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~-~~~~~~--~---~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEE-EVMMDT--K---GSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEE-EEECSC--C---SSCEEEEECTTSSEEEEE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEE-EeccCC--C---CCcccEEEeCCCCEEEEE
Confidence 11 01111 233456789999 677666666778899999876543111 111111 1 123579999999966664
Q ss_pred --eCCeEEEEEcC--CCce--eeeeec----CC---------CCcCeeEEEE---------CCCCCEEEEEEcCCeEEEE
Q 001248 971 --HETQLAIFETT--KLEC--VKQWVP----RE---------SSAPITHATF---------SCDSQLVYACFLDATVCVF 1022 (1114)
Q Consensus 971 --~d~~i~iwd~~--~~~~--~~~~~~----~~---------h~~~v~~l~~---------s~dg~~l~s~s~Dg~I~vw 1022 (1114)
..+.|..++.. ++.. ...+.. .+ .-.....+++ .++|.+.++-...++|+.+
T Consensus 291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~ 370 (433)
T 4hw6_A 291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL 370 (433)
T ss_dssp ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence 56789887765 2321 111111 01 1124677999 7777766666667899999
Q ss_pred EcCCCeeeEEeCCCc----ccCCC---CCCCCccceEEEecCCCCCeEEEEeCCCcEEEEecc
Q 001248 1023 SAANLKLRCRINPSA----YLPAG---VSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1078 (1114)
Q Consensus 1023 d~~~~~~~~~~~~~~----~~~~~---~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~ 1078 (1114)
+. +|.......... -...| ....--.|..++++|.++.++++=...+.|+.++++
T Consensus 371 ~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 371 TP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 84 665543332111 00011 011123477899996566666666667788887764
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.15 E-value=0.0004 Score=78.45 Aligned_cols=247 Identities=9% Similarity=0.033 Sum_probs=141.6
Q ss_pred CccEEEEee-CCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeC-CC----cEEEEEcccc
Q 001248 820 AVPCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-DS----SIQIYNVRVD 892 (1114)
Q Consensus 820 ~v~~v~~s~-d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~-dg----~v~iwd~~~~ 892 (1114)
....++++| ++..|.++. .+.|+.+|+.++.... +.........++|++ ++++|.++.. ++ .+.+++.. +
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~~-g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTRE-S 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEGG-G
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeCC-C
Confidence 467899997 455566665 5889999987755433 333455688999999 7775554443 22 34444433 3
Q ss_pred eEE--EeecccccCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE
Q 001248 893 EVK--SKLKGHSKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 969 (1114)
Q Consensus 893 ~~~--~~l~~h~~~V~~l~~s~-d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~ 969 (1114)
... ..+. ......+++++| +|.++++-..++.|..++.+++.... ....... .....++|+|+|++|.+
T Consensus 215 ~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~--~~~~~~~-----~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 215 GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTP--LFTIQDS-----GWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEE--EEECSSS-----SCCEEEEECTTSSEEEE
T ss_pred ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEE--EEEcCCC-----CcceeEEEcCCCCEEEE
Confidence 221 2222 123457889999 67777776678889999998644311 1111111 23578999999996666
Q ss_pred E--eCCeEEEEEcCC--Cce--eeeeecC----CC---------CcCee-EEEEC--------CCCCEEEEEEcCCeEEE
Q 001248 970 V--HETQLAIFETTK--LEC--VKQWVPR----ES---------SAPIT-HATFS--------CDSQLVYACFLDATVCV 1021 (1114)
Q Consensus 970 ~--~d~~i~iwd~~~--~~~--~~~~~~~----~h---------~~~v~-~l~~s--------~dg~~l~s~s~Dg~I~v 1021 (1114)
+ ..+.|..++... +.. +..+... +. -.... .+++. ++|.+.++-...++|+.
T Consensus 287 ~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~ 366 (430)
T 3tc9_A 287 VVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRI 366 (430)
T ss_dssp EETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEE
T ss_pred EECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEE
Confidence 4 567898887653 221 1111110 10 11233 45553 34555555555678999
Q ss_pred EEcCCCeeeEEeCCCc--ccC--CC---CCCCCccceEEEecCCCCCeEEEEeCCCcEEEEecc
Q 001248 1022 FSAANLKLRCRINPSA--YLP--AG---VSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1078 (1114)
Q Consensus 1022 wd~~~~~~~~~~~~~~--~~~--~~---~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~ 1078 (1114)
++ .+|+......... +.. .| ....--.|..++++|+++.++++-...+.|+.++++
T Consensus 367 i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 367 LT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 98 5666544332100 000 11 001113577899998545566655566778877764
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00063 Score=74.48 Aligned_cols=205 Identities=11% Similarity=0.009 Sum_probs=132.2
Q ss_pred CCccEEEEeeCCCEEEEEe--CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEE
Q 001248 819 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 896 (1114)
Q Consensus 819 ~~v~~v~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~ 896 (1114)
..+..++|++.+..|.... .+.|..+++........+.........+++.+.+++++++-...+.|.+.++.......
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 152 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 152 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence 3478899998777777665 68899999876554333333334567899997566666766677899999987543333
Q ss_pred eecccccCeeEEEEcCCCCEEEEEe-CC-CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE--eC
Q 001248 897 KLKGHSKRITGLAFSHALNVLVSSG-AD-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE 972 (1114)
Q Consensus 897 ~l~~h~~~V~~l~~s~d~~~l~s~s-~D-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~--~d 972 (1114)
.+........++++.|.+..|..+. .. +.|...+++...... ... .+ ......++++|++..|..+ ..
T Consensus 153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~--~~~--~~----~~~PnGla~d~~~~~lY~aD~~~ 224 (349)
T 3v64_C 153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI--IAD--TH----LFWPNGLTIDYAGRRMYWVDAKH 224 (349)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE--SCC--SS----CSCEEEEEEETTTTEEEEEETTT
T ss_pred EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEE--EEE--CC----CCCcceEEEeCCCCEEEEEECCC
Confidence 3333445678999998666655444 44 678888887632211 111 11 1245899999977777664 56
Q ss_pred CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeC
Q 001248 973 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 973 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
+.|..+|...... +.+.. ........|++ .++...++-...+.|..++..+|+.+..+.
T Consensus 225 ~~I~~~~~dG~~~-~~~~~-~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 225 HVIERANLDGSHR-KAVIS-QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp TEEEEEETTSCSC-EEEEC-SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CEEEEEeCCCCce-EEEEe-CCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 7899999875433 33221 22456778888 344444555566889888877777666554
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.08 E-value=0.0002 Score=86.39 Aligned_cols=237 Identities=10% Similarity=-0.027 Sum_probs=129.1
Q ss_pred CccEEEEeeCCCEEEEEe--CCeEEEEEcCCCccccccCCCCC-CeEEEEEecCCCcEEEEEe-CC-----CcEEEEEcc
Q 001248 820 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNIIAIGM-DD-----SSIQIYNVR 890 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~-~i~~l~~sp~d~~~la~g~-~d-----g~v~iwd~~ 890 (1114)
...++++..+++.+++|+ ++.+.+||..+.+-...-..+.. .-.++++.+ ++++++.|+ .+ ..+.+||..
T Consensus 244 ~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 244 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred ccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEec-CCeEEEEeCcccCCcccccceEeCCC
Confidence 344578889999999998 46899999886543322111111 223455566 789999998 44 479999998
Q ss_pred cceEEEee----cccccCeeEEEEcCCCCEEEEEeCCC---------cEEEEeCCCCccccccccccCCCC---CCCCCC
Q 001248 891 VDEVKSKL----KGHSKRITGLAFSHALNVLVSSGADS---------QLCVWSSDGWEKQKNRFLQIPTGR---TPTAQS 954 (1114)
Q Consensus 891 ~~~~~~~l----~~h~~~V~~l~~s~d~~~l~s~s~D~---------~v~iwd~~~~~~~~~~~~~~~~~~---~~~~~~ 954 (1114)
+++-...- ......-...++..++..++.++.|+ .+..||..+..-.. ........ ......
T Consensus 323 t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~--~~~~~~~~~~~~~~~~~ 400 (656)
T 1k3i_A 323 SKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK--SAGKRQSNRGVAPDAMC 400 (656)
T ss_dssp TTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE--EEEECEETTEECCCCBT
T ss_pred CCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceee--cCCccccccccCCCCCC
Confidence 76522210 00000000112334556666665554 46778877643211 11111000 000012
Q ss_pred ceEEEEcc-CCcEEEEEe-CC-----------eEEEEEcCCCceeeeeecCCC-CcCeeEEEECCCCCEEEEEEcC----
Q 001248 955 DTRVQFHQ-DQIHFLVVH-ET-----------QLAIFETTKLECVKQWVPRES-SAPITHATFSCDSQLVYACFLD---- 1016 (1114)
Q Consensus 955 i~~v~fsp-dg~~l~~~~-d~-----------~i~iwd~~~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~s~s~D---- 1016 (1114)
-.++.|.. +++++++++ ++ .+.+||..+...........+ ...-.+++..|||++++.|+.+
T Consensus 401 ~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~ 480 (656)
T 1k3i_A 401 GNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIP 480 (656)
T ss_dssp CEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCT
T ss_pred CceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcC
Confidence 24555544 677777743 21 678888877665433200111 2223455678899999999865
Q ss_pred -------CeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeC
Q 001248 1017 -------ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS 1068 (1114)
Q Consensus 1017 -------g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~ 1068 (1114)
..+.+||..+.+-.. +. .++.....+ -.+...| |+++++.|+.
T Consensus 481 ~~~~~~~~~v~~ydp~t~~W~~-~~---~~~~~R~~h----s~a~ll~-dg~v~v~GG~ 530 (656)
T 1k3i_A 481 FEDSTPVFTPEIYVPEQDTFYK-QN---PNSIVRVYH----SISLLLP-DGRVFNGGGG 530 (656)
T ss_dssp TCCCSBCCCCEEEEGGGTEEEE-CC---CCSSCCCTT----EEEEECT-TSCEEEEECC
T ss_pred cCCCCcccceEEEcCCCCceee-cC---CCCCccccc----cHhhcCC-CcEEEecCCC
Confidence 468999998876443 21 112111011 1233456 6899999885
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.08 E-value=0.0025 Score=71.18 Aligned_cols=230 Identities=10% Similarity=0.082 Sum_probs=144.5
Q ss_pred CEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc----eEEEeecccccCee
Q 001248 831 SYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD----EVKSKLKGHSKRIT 906 (1114)
Q Consensus 831 ~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~----~~~~~l~~h~~~V~ 906 (1114)
.+|+.+....|+..++........+. ....+..++|++.++.++.+-...+.|+.+++... .....+........
T Consensus 84 ~~ll~~~~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 84 AYLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp CEEEEEETTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred ceeEEeccceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 36666667889999988665444333 44578999999855556665566788999988752 22233333445678
Q ss_pred EEEEcCCC-CEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEe---CCeEEEEEcCC
Q 001248 907 GLAFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH---ETQLAIFETTK 982 (1114)
Q Consensus 907 ~l~~s~d~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~---d~~i~iwd~~~ 982 (1114)
+|++.+.+ ++.++-...+.|.+.+++...... .+. ... .....+++.|.+.+|..+. .+.|...++..
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~--l~~-~~~-----~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG 234 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT--LFR-ENG-----SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 234 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEE--EEE-CSS-----CCEEEEEEETTTTEEEEEECSSSCCEEEEETTS
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEE--EEe-CCC-----CCcceEEEecccCeEEEEeCCCCCEEEEEeCCC
Confidence 89998744 444555567889999988643211 111 111 2458999999776666643 36788888865
Q ss_pred CceeeeeecCCCCcCeeEEEECCCCCEEEEEEc-CCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCC
Q 001248 983 LECVKQWVPRESSAPITHATFSCDSQLVYACFL-DATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN 1061 (1114)
Q Consensus 983 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~-Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~ 1061 (1114)
.... .+.. ..-.....|++++++..|+.+.. .+.|..+|++.......+.....+ -.|..++.. ++.
T Consensus 235 ~~~~-~~~~-~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l--------~~P~gl~v~--~~~ 302 (400)
T 3p5b_L 235 VDIY-SLVT-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRL--------AHPFSLAVF--EDK 302 (400)
T ss_dssp CSCE-EEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTT--------SSEEEEEEE--TTE
T ss_pred CccE-EEEE-CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCC--------CCCEEEEEe--CCE
Confidence 4332 2221 22357899999998888877654 578999998754433222211111 234466664 345
Q ss_pred eEEEEeCCCcEEEEeccCCC
Q 001248 1062 EFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1062 ~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
++++-...+.|..++..+|+
T Consensus 303 lywtd~~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 303 VFWTDIINEAIFSANRLTGS 322 (400)
T ss_dssp EEEEESSSCSEEEEESSSCC
T ss_pred EEEecCCCCeEEEEEcCCCC
Confidence 66666677889999977776
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.0073 Score=65.33 Aligned_cols=194 Identities=12% Similarity=0.048 Sum_probs=113.1
Q ss_pred CCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccc-cCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEc--ccceEE
Q 001248 819 EAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV--RVDEVK 895 (1114)
Q Consensus 819 ~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~--~~~~~~ 895 (1114)
..+..+.+.+++..++++.+|.|..- ...++.-.. .......+..+++.+ ++.+++++...+..+-+|- .+.+.+
T Consensus 122 ~~~~~i~~~~~~~~~~~~~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~~G~~~~S~d~gG~tW~~~ 199 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMITNVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSP-SGEYVAVSSRGSFYSTWEPGQTAWEPH 199 (327)
T ss_dssp SCEEEEEEEETTEEEEEETTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECT-TSCEEEEETTSSEEEEECTTCSSCEEE
T ss_pred CCeEEEEEECCCCEEEEeCCccEEEE-cCCCCCCEEeecCCCcceEEEEEcC-CCcEEEEECCCcEEEEeCCCCCceeEC
Confidence 34667888788887777766654221 122322211 223455789999999 7888877654433333442 334443
Q ss_pred EeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeE
Q 001248 896 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQL 975 (1114)
Q Consensus 896 ~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i 975 (1114)
. ......+..+++.++++.++ ++.+|.+++++.+.++. +..+... .......+..+++.+++..++++.++.+
T Consensus 200 ~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~t--W~~~~~~--~~~~~~~~~~v~~~~~~~~~~~g~~g~i 272 (327)
T 2xbg_A 200 N--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSEN--WGELLSP--LRRNSVGFLDLAYRTPNEVWLAGGAGAL 272 (327)
T ss_dssp E--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEE--ECCCBCT--TSSCCSCEEEEEESSSSCEEEEESTTCE
T ss_pred C--CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCe--eEeccCC--cccCCcceEEEEecCCCEEEEEeCCCeE
Confidence 2 23456788999999987664 45678777765332221 1111111 0000124688999999998888888877
Q ss_pred EEEEcCCCceeeeeec-CCCCcCeeEEEECCCCCEEEEEEcCCeEEEEE
Q 001248 976 AIFETTKLECVKQWVP-RESSAPITHATFSCDSQLVYACFLDATVCVFS 1023 (1114)
Q Consensus 976 ~iwd~~~~~~~~~~~~-~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd 1023 (1114)
.+....++.-..+.. ......+.++.|.++++ +++++.+|.|.-++
T Consensus 273 -~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 273 -LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp -EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred -EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 344444543332221 12245678899876555 55566789877665
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=0.0058 Score=65.76 Aligned_cols=225 Identities=11% Similarity=0.031 Sum_probs=125.5
Q ss_pred CCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEE-eCCCeEEEEEccCC---cee
Q 001248 380 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA-YSRHIVQIYSYHGG---DEV 455 (1114)
Q Consensus 380 dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~~dg~i~iwd~~~~---~~~ 455 (1114)
...|+..|+.+++.... +. ....+..++|++++..|..+ ..++.|..+++.+. ...
T Consensus 9 ~~~I~~i~~~~~~~~~~-------------------~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~ 68 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSL-------------------IP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY 68 (316)
T ss_dssp BSSEEEEETTSCCCEEE-------------------EC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C
T ss_pred CCeEEEEECCCcceEeh-------------------hc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCccc
Confidence 46789999887654321 11 23367899999976655555 45688999998761 222
Q ss_pred eeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecC-Ce
Q 001248 456 RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD-GK 534 (1114)
Q Consensus 456 ~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-~~ 534 (1114)
.. .+...-.....+++.+.++. +.++-...+.|.+.|+........+.........+++.+. ++.++++.... +.
T Consensus 69 ~~--~~~~~~~~p~glavd~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~-~g~ly~~d~~~~~~ 144 (316)
T 1ijq_A 69 DT--VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAK 144 (316)
T ss_dssp EE--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-TTEEEEEECSSSCE
T ss_pred EE--EEeCCCCCcCEEEEeecCCe-EEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCC-CCEEEEEccCCCCe
Confidence 21 12222245688999876665 4556566789999997644332233333456677876543 23444444333 67
Q ss_pred EEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEe-CCCeEEEEECCCcceEEEec
Q 001248 535 IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSID 613 (1114)
Q Consensus 535 i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~ 613 (1114)
|...+++.................++ +++++..|+.+. ..+.|..+|+..........
T Consensus 145 I~~~~~dG~~~~~~~~~~~~~P~gla---------------------~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~ 203 (316)
T 1ijq_A 145 IKKGGLNGVDIYSLVTENIQWPNGIT---------------------LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE 203 (316)
T ss_dssp EEEEETTSCCEEEEECSSCSCEEEEE---------------------EETTTTEEEEEETTTTEEEEEETTSCSCEEEEE
T ss_pred EEEEcCCCCCeEEEEECCCCCceEEE---------------------EeccCCEEEEEECCCCeEEEEecCCCceEEEee
Confidence 77777653222111111222334444 444433454444 56789999986433222222
Q ss_pred cCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 614 ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 614 ~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
..........+++. .+.++++-...+.|..++..++
T Consensus 204 ~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g 239 (316)
T 1ijq_A 204 DEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 239 (316)
T ss_dssp CTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred cCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCC
Confidence 21122234577775 3556666666788988887776
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00038 Score=83.95 Aligned_cols=249 Identities=12% Similarity=0.013 Sum_probs=138.4
Q ss_pred EEEEee-CCCEEEEEe-CC-----------eEEEEEcCCCcccc--ccCC-CCCCeEEEEEecCCCcEEEEEe-CCCcEE
Q 001248 823 CFALSK-NDSYVMSAS-GG-----------KISLFNMMTFKTMA--TFMP-PPPAATFLAFHPQDNNIIAIGM-DDSSIQ 885 (1114)
Q Consensus 823 ~v~~s~-d~~~l~~~~-dg-----------~i~iwd~~~~~~~~--~~~~-~~~~i~~l~~sp~d~~~la~g~-~dg~v~ 885 (1114)
++++.+ +++.++.|+ ++ .+.+||..+++... .+.. +.....++++.. +++++++|+ .+..++
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCC-CCCEEEeCCCCCCceE
Confidence 567777 888888876 21 58899998765432 2221 223344577777 899999998 455899
Q ss_pred EEEcccceEEEeecccccCe-eEEEEcCCCCEEEEEe-CC-----CcEEEEeCCCCccccccc---cccCCCCCC----C
Q 001248 886 IYNVRVDEVKSKLKGHSKRI-TGLAFSHALNVLVSSG-AD-----SQLCVWSSDGWEKQKNRF---LQIPTGRTP----T 951 (1114)
Q Consensus 886 iwd~~~~~~~~~l~~h~~~V-~~l~~s~d~~~l~s~s-~D-----~~v~iwd~~~~~~~~~~~---~~~~~~~~~----~ 951 (1114)
+||..+++-...-..+..+. .+++..+++++++.|+ .+ ..+.+||..+++-..... ......... .
T Consensus 269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~ 348 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS 348 (656)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence 99998764322211122222 3455667999999998 44 569999998743211100 001111000 0
Q ss_pred CCCceEEEEccCCcEEEEEeCCeEEEEEcCCCceeeeeecCC-------CCcCeeEEEEC-CCCCEEEEEEcCC------
Q 001248 952 AQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRE-------SSAPITHATFS-CDSQLVYACFLDA------ 1017 (1114)
Q Consensus 952 ~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~-------h~~~v~~l~~s-~dg~~l~s~s~Dg------ 1017 (1114)
...+..+. -.+|..+..+....+..||..+........... ....-.++.|. .++++++.|+.++
T Consensus 349 ~~~iyv~G-g~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~ 427 (656)
T 1k3i_A 349 DNHAWLFG-WKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDA 427 (656)
T ss_dssp TCSCCEEE-CGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBC
T ss_pred CCceEEEE-CCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCc
Confidence 00111111 123333322334568889988776443222110 01123444443 4788888887543
Q ss_pred -----eEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCC-----------CcEEEEeccCCC
Q 001248 1018 -----TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----------GGVHVFEPLESE 1081 (1114)
Q Consensus 1018 -----~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~D-----------g~v~vW~i~~~~ 1081 (1114)
.|.+||..+..-.... ...++.+.. -. .++..| |+++++.|+.+ ..+.+||+.+.+
T Consensus 428 ~~~~~~v~~yd~~~~~W~~~~--~~~mp~~R~---~~--~~~~l~-~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~ 499 (656)
T 1k3i_A 428 TTNAHIITLGEPGTSPNTVFA--SNGLYFART---FH--TSVVLP-DGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT 499 (656)
T ss_dssp CCCEEEEECCSTTSCCEEEEC--TTCCSSCCB---SC--EEEECT-TSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE
T ss_pred CCcceEEEcCCCCCCCeeEEc--cCCCCCCcc---cC--CeEECC-CCCEEEECCcccCcCcCCCCcccceEEEcCCCCc
Confidence 6888888777654332 011232211 11 345556 68899999865 578999998755
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.03 E-value=0.0012 Score=73.63 Aligned_cols=208 Identities=6% Similarity=-0.042 Sum_probs=133.4
Q ss_pred CCCccEEEEeeCCCEEEEEe--CCeEEEEEcCCC----ccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc
Q 001248 818 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTF----KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 891 (1114)
Q Consensus 818 ~~~v~~v~~s~d~~~l~~~~--dg~i~iwd~~~~----~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~ 891 (1114)
...+..++|++.+..|.... .+.|+.+++... .....+.........+++.+.++++.++-...+.|.+.++..
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 45578899998777777665 688999998752 222223333456788999975566666666788999999876
Q ss_pred ceEEEeecccccCeeEEEEcCCCCEEEEEeC--CCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE
Q 001248 892 DEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 969 (1114)
Q Consensus 892 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~--D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~ 969 (1114)
......+........+|++.|.+.+|+.+.. .+.|...+++...... ... .+ ......+++++++..|..
T Consensus 191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~--~~~--~~----l~~P~glavd~~~~~lY~ 262 (400)
T 3p5b_L 191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVT--EN----IQWPNGITLDLLSGRLYW 262 (400)
T ss_dssp CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE--EEC--SS----CSCEEEEEEETTTTEEEE
T ss_pred CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE--EEE--CC----CCceEEEEEEeCCCEEEE
Confidence 5443334334455789999997766665543 3678888887643211 111 11 124589999998877776
Q ss_pred E--eCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeC
Q 001248 970 V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 970 ~--~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
+ ..+.|..+|+..............-.....|++. .+.++++-...+.|..+|..+|+.+..+.
T Consensus 263 aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 263 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred EECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 4 5678999998754433322222223456677773 33344455566789999988887776654
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.03 E-value=0.0025 Score=70.87 Aligned_cols=215 Identities=10% Similarity=-0.030 Sum_probs=128.4
Q ss_pred EeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCC
Q 001248 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1114)
........+..++|.+.+.+|+.+-...+.|..+++.++.... ++.........+++.+.+
T Consensus 110 ~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~-------------------~~~~~~~~p~glavd~~~ 170 (386)
T 3v65_B 110 LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE-------------------VVSTGLESPGGLAVDWVH 170 (386)
T ss_dssp EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE-------------------EECSSCSCCCCEEEETTT
T ss_pred EEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE-------------------EEeCCCCCccEEEEEeCC
Confidence 3344556689999998877777777777899999988764322 111112245678999865
Q ss_pred CeEE-EEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCC-CCEEEEeCCCCcceeEeecccc
Q 001248 433 SLFG-VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-KTIKVWDATNGAKQYIFEGHEA 510 (1114)
Q Consensus 433 ~~la-s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~h~~ 510 (1114)
..|. +-...+.|.+.++....... .+...-.....+++.|.+..+ +++-... +.|...++............-.
T Consensus 171 g~lY~~d~~~~~I~~~~~dg~~~~~---l~~~~l~~P~giavdp~~g~l-y~td~~~~~~I~r~~~dG~~~~~~~~~~~~ 246 (386)
T 3v65_B 171 DKLYWTDSGTSRIEVANLDGAHRKV---LLWQSLEKPRAIALHPMEGTI-YWTDWGNTPRIEASSMDGSGRRIIADTHLF 246 (386)
T ss_dssp TEEEEEETTTTEEEECBTTSCSCEE---EECSSCSCEEEEEEETTTTEE-EEEECSSSCEEEEEETTSCSCEEEECSSCS
T ss_pred CeEEEEcCCCCeEEEEeCCCCceEE---eecCCCCCCcEEEEEcCCCeE-EEeccCCCCEEEEEeCCCCCcEEEEECCCC
Confidence 5554 44556778888887543221 222333567899999987763 4444444 7788888654332222333344
Q ss_pred CEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEE
Q 001248 511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 590 (1114)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~ 590 (1114)
....+++++.. +.+.++-+..+.|..+|++.......+.........+++. .+..++
T Consensus 247 ~PnGlavd~~~-~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~----------------------~~~ly~ 303 (386)
T 3v65_B 247 WPNGLTIDYAG-RRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF----------------------EDSLYW 303 (386)
T ss_dssp CEEEEEEEGGG-TEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE----------------------TTEEEE
T ss_pred CeeeEEEeCCC-CEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE----------------------CCEEEE
Confidence 57788886543 3455566667889988886533332222222223333331 122344
Q ss_pred EEeCCCeEEEEECCCcceEEEec
Q 001248 591 AAGDDFSIKFWDMDSVQLLTSID 613 (1114)
Q Consensus 591 ~~~~dg~i~iwd~~~~~~~~~~~ 613 (1114)
+-...+.|..++..+|+.+..+.
T Consensus 304 td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 304 TDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp EETTTTEEEEEETTTCCSCEEEE
T ss_pred eeCCCCeEEEEECCCCcceEEEc
Confidence 55567778888866666655554
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=97.95 E-value=0.09 Score=64.43 Aligned_cols=498 Identities=11% Similarity=0.038 Sum_probs=243.8
Q ss_pred CCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEE
Q 001248 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 438 (1114)
Q Consensus 359 ~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 438 (1114)
..|+++.. .+|. |-.|+.+ .+..+|..+++.... . . .. -.-....|.++....+|.+.+ |
T Consensus 103 ~~i~~i~~-~~g~--lWigt~~-Gl~~~~~~~~~~~~~------~------~-~~--~~l~~~~i~~i~~d~~g~lWi-g 162 (758)
T 3ott_A 103 TDVRTMAL-QGDT--LWLGALN-GLYTYQLQSRKLTSF------D------T-RR--NGLPNNTIYSIIRTKDNQIYV-G 162 (758)
T ss_dssp SCEEEEEE-ETTE--EEEEETT-EEEEEETTTCCEEEE------C------H-HH--HCCSCSCEEEEEECTTCCEEE-E
T ss_pred ceEEEEEe-cCCc--EEEEcCC-cceeEeCCCCeEEEe------c------c-CC--CCcCCCeEEEEEEcCCCCEEE-E
Confidence 35777754 4665 3445554 688888876543221 0 0 00 011234688998888887665 4
Q ss_pred eCCCeEEEEEccCCceeeeeEeecc----ccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEE
Q 001248 439 YSRHIVQIYSYHGGDEVRQHLEIDA----HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 514 (1114)
Q Consensus 439 ~~dg~i~iwd~~~~~~~~~~~~l~~----h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 514 (1114)
+.+| +..++..+++.... .+.. ....|.++....++..+.+.+ . +-+..+|..+++......-....|.+
T Consensus 163 t~~G-l~~~~~~~~~~~~~--~~~~~~~~~~~~i~~i~~d~~~~~lWigt--~-~Gl~~~~~~~~~~~~~~~l~~~~i~~ 236 (758)
T 3ott_A 163 TYNG-LCRYIPSNGKFEGI--PLPVHSSQSNLFVNSLLEDTTRQCVWIGT--E-GYLFQYFPSTGQIKQTEAFHNNSIKS 236 (758)
T ss_dssp ETTE-EEEEETTTTEEEEE--CCCCCTTCSSCCEEEEEEETTTTEEEEEE--E-EEEEEEETTTTEEEEEEEEEEEEEEE
T ss_pred eCCC-HhhCccCCCceEEe--cCCCccccccceeEEEEEECCCCEEEEEE--C-CCCeEEcCCCCeEEeccCCCCCeEEE
Confidence 4444 77888776543211 1111 122488888877776433433 2 35888897766533211112345777
Q ss_pred EeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeC
Q 001248 515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 594 (1114)
Q Consensus 515 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 594 (1114)
+.. +.+|. |..|+. +-+.+++..+..... +..... .. .+.....+.++..+.+++ |-.|+.
T Consensus 237 i~~--d~~g~-lWigT~-~Gl~~~~~~~~~~~~-~~~~~~----------~~---~~l~~~~i~~i~~D~~g~-lWiGT~ 297 (758)
T 3ott_A 237 LAL--DGNGD-LLAGTD-NGLYVYHNDTTPLQH-IIHDSR----------NI---QSLTNNIIWNIFADQEHN-IWLGTD 297 (758)
T ss_dssp EEE--CTTCC-EEEEET-TEEEEECCTTSCCEE-ECCCTT----------CT---TSCSCSCEEEEEECTTCC-EEEEES
T ss_pred EEE--cCCCC-EEEEeC-CceeEEecCCCcEEE-EEcCCC----------Cc---CcCCcCeEEEEEEcCCCC-EEEEeC
Confidence 663 44544 444554 457778765533221 110000 00 001112344444444444 444555
Q ss_pred CCeEEEEECCCcceEEEec---cCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCcc-ceeeccccccccccCCCC
Q 001248 595 DFSIKFWDMDSVQLLTSID---ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR-LLRTFENLAYDASRTSEN 670 (1114)
Q Consensus 595 dg~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~ 670 (1114)
.| +.++.....-...... .......|.++....+|.+.+. +.+| +..++..++.. ....+.
T Consensus 298 ~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~~~~~~~~~~~~------------ 362 (758)
T 3ott_A 298 YG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANG-LIRFTDPAGERHDAIWYR------------ 362 (758)
T ss_dssp SS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTE-EEEESCTTSSCCCCEEEC------------
T ss_pred Cc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCc-ceeecccccccceeEEec------------
Confidence 56 4444322111111111 0111234677777777776654 4444 54554333210 000000
Q ss_pred CCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCcccc
Q 001248 671 SKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLR 750 (1114)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 750 (1114)
.... . . ...
T Consensus 363 ------------------------------------------------------------~~~~--~---~------~l~ 371 (758)
T 3ott_A 363 ------------------------------------------------------------MGDK--T---Y------PLS 371 (758)
T ss_dssp ------------------------------------------------------------TTCS--S---S------CCS
T ss_pred ------------------------------------------------------------cCCc--C---C------CCC
Confidence 0000 0 0 002
Q ss_pred ccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCC
Q 001248 751 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 830 (1114)
Q Consensus 751 ~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~ 830 (1114)
...|.++....+|+..+ ++. +-+..++.....+. .+.... .........|.++....+|
T Consensus 372 ~~~v~~i~~d~~g~lWi-gt~-~GL~~~~~~~~~~~------------~~~~~~-------~~~~~~~~~v~~i~~d~~g 430 (758)
T 3ott_A 372 HNRIRHIYEDKEQQLWI-ATD-GSINRYDYATRQFI------------HYNIVD-------NTGTYNTNWTYYIFEDTAG 430 (758)
T ss_dssp CSCEEEEEECTTSCEEE-EET-TEEEEEETTTTEEE------------EEEEEC-------CC--CBSSSEEEEEECTTS
T ss_pred CCceEEEEECCCCCEEE-EeC-CcHhhcCcCCCcEE------------EeecCC-------CcCCCCCceEEEEEEcCCC
Confidence 24577777777777444 343 45666664422110 000000 0000023457778877777
Q ss_pred CEEEEEeCCeEEEEEcCCC-----ccc---cc---cCC-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEee
Q 001248 831 SYVMSASGGKISLFNMMTF-----KTM---AT---FMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL 898 (1114)
Q Consensus 831 ~~l~~~~dg~i~iwd~~~~-----~~~---~~---~~~-~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l 898 (1114)
.+.+....+.|.++|..+. ... .. ..+ ....|.++...+ +|++.+.++..+-|..+|..+++.....
T Consensus 431 ~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi~~~t~~Gl~~~d~~~~~~~~~~ 509 (758)
T 3ott_A 431 QLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDN-EGNVWVLLYNNKGIDKINPRTREVTKLF 509 (758)
T ss_dssp EEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECT-TSCEEEEETTCSSEEEEETTTTEEEEEC
T ss_pred CEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcC-CCCEEEEccCCCCcEEEeCCCCceEEec
Confidence 6555444667888886531 111 01 111 223588898888 7776653333455888998877654322
Q ss_pred cc---cccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeE
Q 001248 899 KG---HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQL 975 (1114)
Q Consensus 899 ~~---h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i 975 (1114)
.. ....+.++....+|.+.+. +..| +..++..+...... . ..+-. ...|.++... +|.+.+++ +..+
T Consensus 510 ~~~~~~~~~~~~i~~d~~g~lWig-t~~G-l~~~~~~~~~~~~~---~-~~gl~--~~~i~~i~~~-~g~lWi~t-~~Gl 579 (758)
T 3ott_A 510 ADELTGEKSPNYLLCDEDGLLWVG-FHGG-VMRINPKDESQQSI---S-FGSFS--NNEILSMTCV-KNSIWVST-TNGL 579 (758)
T ss_dssp TTTSCGGGCEEEEEECTTSCEEEE-ETTE-EEEECC--CCCCBC---C-CCC-----CCEEEEEEE-TTEEEEEE-SSCE
T ss_pred CCCcCCCcccceEEECCCCCEEEE-ecCc-eEEEecCCCceEEe---c-ccCCC--ccceEEEEEC-CCCEEEEC-CCCe
Confidence 11 1346788888888877764 4455 88888766432211 1 11111 1356777664 66554444 5668
Q ss_pred EEEEcCCCceeeeeecCCCCcCeeEEEEC-CCCCEEEEEEcCCeEEEEEc
Q 001248 976 AIFETTKLECVKQWVPRESSAPITHATFS-CDSQLVYACFLDATVCVFSA 1024 (1114)
Q Consensus 976 ~iwd~~~~~~~~~~~~~~h~~~v~~l~~s-~dg~~l~s~s~Dg~I~vwd~ 1024 (1114)
..||..+.+... +... ...+....+. ++|. |+.|+.+|.+++ +.
T Consensus 580 ~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~G~-l~fG~~~Gl~~f-~p 624 (758)
T 3ott_A 580 WIIDRKTMDARQ-QNMT--NKRFTSLLFDPKEDC-VYLGGADGFGIS-HS 624 (758)
T ss_dssp EEEETTTCCEEE-C--C--CCCCSEEEEETTTTE-EEEECBSEEEEE-EC
T ss_pred EEEcCCCceeEE-ecCC--CCceeeeEEECCCCc-EEEecCCceEEE-Ch
Confidence 889988765432 2111 2233444443 4554 555777775554 44
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00012 Score=88.26 Aligned_cols=207 Identities=6% Similarity=-0.040 Sum_probs=127.1
Q ss_pred CCccEEEEeeCCCEEEEEe--CCeEEEEEcCC----CccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc
Q 001248 819 EAVPCFALSKNDSYVMSAS--GGKISLFNMMT----FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 892 (1114)
Q Consensus 819 ~~v~~v~~s~d~~~l~~~~--dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~ 892 (1114)
..+..++|++.+..|..+. .+.|+.+++.+ ......+.........+++.+.+++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 4467889998887777775 57899999875 22222222222345678888646666666666789999998765
Q ss_pred eEEEeecccccCeeEEEEcCCCCEEEEEeC-C-CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE
Q 001248 893 EVKSKLKGHSKRITGLAFSHALNVLVSSGA-D-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 970 (1114)
Q Consensus 893 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-D-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~ 970 (1114)
.....+........+|++.|++.+|+.+.. . +.|.+++++...... .+. .. ......|+|+|++..|..+
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~--l~~-~~-----l~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVT-EN-----IQWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE--ESC-SS-----CSSCCCEEECTTTCCEEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE--EEe-CC-----CCCccEEEEeccCCEEEEE
Confidence 433333333345678999987665555443 2 678888776532211 110 11 1245789999987666653
Q ss_pred --eCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeC
Q 001248 971 --HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 971 --~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
..+.|.++++........+...........|++..+ .++++....+.|..++..+|+.+..+.
T Consensus 558 D~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 558 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp ETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred ecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 567899999875333222211112234556666443 344445556889999999999887765
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0028 Score=71.41 Aligned_cols=253 Identities=12% Similarity=0.104 Sum_probs=134.7
Q ss_pred CCceEEEEcCC--CCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 359 SSPMSMDFHPV--QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 359 ~~v~~v~~spd--g~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
....+++|+|+ +..|+++ ...+.|+.+|..+++... +.........++|+++|++++
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~-D~~~~I~~id~~~g~v~~--------------------~~~~~~~P~giavd~dG~lyV 197 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWV-GQRDAFRHVDFVNQYVDI--------------------KTTNIGQCADVNFTLNGDMVV 197 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEE-CBTSCEEEEETTTTEEEE--------------------ECCCCSCEEEEEECTTCCEEE
T ss_pred CCCceEEEccccCCCEEEEE-eCCCCEEEEECCCCEEEE--------------------eecCCCCccEEEECCCCCEEE
Confidence 35679999995 3434444 334899999998776543 222334689999999999444
Q ss_pred EEeCC---Ce-EEEEEccCCceeeeeEeeccccCCeeEEEecC-CCCeeEEEEecCCCCEEEEeCCCCcceeEeec--cc
Q 001248 437 VAYSR---HI-VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIFEG--HE 509 (1114)
Q Consensus 437 s~~~d---g~-i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--h~ 509 (1114)
+.... .. +...+...+.... ..+. .-.....+++.| +|. +.++-..++.|+.+|..++.....+.. ..
T Consensus 198 ad~~~~~~~~gv~~~~~~~~~~~~--~~~~-~~~~P~giavd~~~G~--lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~ 272 (433)
T 4hw6_A 198 VDDQSSDTNTGIYLFTRASGFTER--LSLC-NARGAKTCAVHPQNGK--IYYTRYHHAMISSYDPATGTLTEEEVMMDTK 272 (433)
T ss_dssp EECCSCTTSEEEEEECGGGTTCCE--EEEE-ECSSBCCCEECTTTCC--EEECBTTCSEEEEECTTTCCEEEEEEECSCC
T ss_pred EcCCCCcccceEEEEECCCCeecc--cccc-ccCCCCEEEEeCCCCe--EEEEECCCCEEEEEECCCCeEEEEEeccCCC
Confidence 43311 22 3333333222111 1111 223457789999 555 555666678899999887765333221 12
Q ss_pred cCEEEEeeccCCCce-EEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEec--CCCe--EEeeecccceeEEEe--
Q 001248 510 APVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA--DGTR--TYQGFRKRSLGVVQF-- 582 (1114)
Q Consensus 510 ~~v~~~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~--~g~~--~~~~~~~~~v~~~~~-- 582 (1114)
..-..++|++ +++ +.++-...+.|..++++....... .+..++-.. .|.. ......-.....+++
T Consensus 273 ~~~~~ia~dp--dG~~LYvad~~~~~I~~~~~d~~~~~~~------~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~ 344 (433)
T 4hw6_A 273 GSNFHIVWHP--TGDWAYIIYNGKHCIYRVDYNRETGKLA------VPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVK 344 (433)
T ss_dssp SSCEEEEECT--TSSEEEEEETTTTEEEEEEBCTTTCCBC------CCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEE
T ss_pred CCcccEEEeC--CCCEEEEEeCCCCEEEEEeCCCCCcccC------cEEEEEecCCCCccCCCcccceEEcCCccEEEEc
Confidence 2234577654 445 455555678899988763211100 000111000 0000 000000112334566
Q ss_pred -------cCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCC----------------CCCcCeEEEc-CCCCEEEEEeC
Q 001248 583 -------DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG----------------LPASPRIRFN-KDGCLLAVSTN 638 (1114)
Q Consensus 583 -------~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----------------~~~v~~~~~s-~d~~~l~~~~~ 638 (1114)
.++++++++-...+.|+.++. +|... ++.+.+. ...-..++++ ++|.++++-..
T Consensus 345 n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~ 422 (433)
T 4hw6_A 345 NEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCD 422 (433)
T ss_dssp CGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGG
T ss_pred cccccccCCCCcEEEEECCCCEEEEECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCC
Confidence 556666666667788888885 55433 3322111 1223468888 56666555555
Q ss_pred CCcEEEEEc
Q 001248 639 DNGIKILAT 647 (1114)
Q Consensus 639 dg~i~iwd~ 647 (1114)
.+.|+.+++
T Consensus 423 n~rIr~i~~ 431 (433)
T 4hw6_A 423 NHRVRKIAP 431 (433)
T ss_dssp GTEEEEEEE
T ss_pred CCEEEEEec
Confidence 667777665
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0038 Score=70.35 Aligned_cols=156 Identities=12% Similarity=0.054 Sum_probs=95.1
Q ss_pred CCceEEEEcC-CCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEE
Q 001248 359 SSPMSMDFHP-VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 437 (1114)
Q Consensus 359 ~~v~~v~~sp-dg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 437 (1114)
.....|+|+| ++..|.++ ...+.|+.+|+.++.... +.........|+|+++|++|.+
T Consensus 137 ~~P~~lavdp~~~g~Lyv~-d~~~~I~~id~~~~~v~~--------------------~~~~~~~P~~ia~d~~G~~lyv 195 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLV-GEQHPTRLIDFEKEYVST--------------------VYSGLSKVRTICWTHEADSMII 195 (430)
T ss_dssp SCCCEEEEETTEEEEEEEE-EBTEEEEEEETTTTEEEE--------------------EECCCSCEEEEEECTTSSEEEE
T ss_pred CCCCEEEECCCCCCeEEEE-eCCCcEEEEECCCCEEEE--------------------EecCCCCcceEEEeCCCCEEEE
Confidence 4568999998 45544554 334889999988765432 1123346889999999996666
Q ss_pred EeCC----C-eEEEEEccCCceeeeeEeeccccCCeeEEEecC-CCCeeEEEEecCCCCEEEEeCCCCcceeEeec-ccc
Q 001248 438 AYSR----H-IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIFEG-HEA 510 (1114)
Q Consensus 438 ~~~d----g-~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-h~~ 510 (1114)
+... . .+.+.+. .+.... ...+.. ......++++| ++. ++++-..++.|..++...+........ ...
T Consensus 196 ad~~~~~~~~~v~~~~~-~g~~~~-~~~l~~-~~~p~giavdp~~g~--lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~ 270 (430)
T 3tc9_A 196 TNDQNNNDRPNNYILTR-ESGFKV-ITELTK-GQNCNGAETHPINGE--LYFNSWNAGQVFRYDFTTQETTPLFTIQDSG 270 (430)
T ss_dssp EECCSCTTSEEEEEEEG-GGTSCS-EEEEEE-CSSCCCEEECTTTCC--EEEEETTTTEEEEEETTTTEEEEEEECSSSS
T ss_pred EeCCCCcccceEEEEeC-CCceee-eeeecc-CCCceEEEEeCCCCE--EEEEECCCCEEEEEECCCCcEEEEEEcCCCC
Confidence 6542 2 2333443 332221 012221 23457889999 555 566666778899999876654222221 223
Q ss_pred CEEEEeeccCCCce-EEEEEecCCeEEEEEcCC
Q 001248 511 PVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDN 542 (1114)
Q Consensus 511 ~v~~~~~~~~~~~~-~l~s~~~d~~i~~wd~~~ 542 (1114)
....++|++ +|+ ++++-...+.|..++.+.
T Consensus 271 ~P~gia~~p--dG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 271 WEFHIQFHP--SGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp CCEEEEECT--TSSEEEEEETTTTEEEEEEEET
T ss_pred cceeEEEcC--CCCEEEEEECCCCEEEEEeCCc
Confidence 466788755 456 455556678899988764
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0042 Score=66.72 Aligned_cols=204 Identities=7% Similarity=-0.033 Sum_probs=130.5
Q ss_pred CccEEEEeeCCCEEEEEe--CCeEEEEEcCCCcccc-ccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEE
Q 001248 820 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMA-TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 896 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~ 896 (1114)
.+.+++|++.+..|.... .+.|..++........ .+...-.....+++.+.+++++++-...+.|.++++.......
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence 356788988766666665 6889999987653222 2222223567899987466666766677899999987543222
Q ss_pred eecccccCeeEEEEcCCCCEEEEEeC--CCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE--eC
Q 001248 897 KLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE 972 (1114)
Q Consensus 897 ~l~~h~~~V~~l~~s~d~~~l~s~s~--D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~--~d 972 (1114)
.+........++++.|.+.+|..+.. .+.|...+++...... ... .+ ......+++++++..|..+ ..
T Consensus 116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~--~~~--~~----l~~Pnglavd~~~~~lY~aD~~~ 187 (318)
T 3sov_A 116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI--IIN--SE----IYWPNGLTLDYEEQKLYWADAKL 187 (318)
T ss_dssp EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE--EEC--SS----CSCEEEEEEETTTTEEEEEETTT
T ss_pred EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE--EEE--CC----CCCccEEEEeccCCEEEEEECCC
Confidence 23334456789999987666666553 5778888887532211 111 11 1245899999977777664 56
Q ss_pred CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeC
Q 001248 973 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 973 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
+.|..+|..... .+.+.. +.......+++.. +.++++-...+.|..++..+|+....+.
T Consensus 188 ~~I~~~d~dG~~-~~~~~~-~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 188 NFIHKSNLDGTN-RQAVVK-GSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp TEEEEEETTSCS-CEEEEC-SCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CEEEEEcCCCCc-eEEEec-CCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 789999986433 333321 2345677888753 3344455566889999998888766654
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0036 Score=66.26 Aligned_cols=196 Identities=8% Similarity=0.154 Sum_probs=124.6
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecC---CCc---EEEEEe-C--CCcEEEEEc--ccceEEE
Q 001248 829 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ---DNN---IIAIGM-D--DSSIQIYNV--RVDEVKS 896 (1114)
Q Consensus 829 d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~---d~~---~la~g~-~--dg~v~iwd~--~~~~~~~ 896 (1114)
...+++... .+.+.+||+ +++.++.+.. +.+..+.+-|. +++ ++++.. . +++|.+|++ .+++ +.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 334444444 688999999 8888888763 56777776651 122 233333 3 579999977 3443 44
Q ss_pred eecc------cc-cCeeEEEE--cCC-CC-EEEEEeCCCcEEEEeCCC---CccccccccccCCCCCCCCCCceEEEEcc
Q 001248 897 KLKG------HS-KRITGLAF--SHA-LN-VLVSSGADSQLCVWSSDG---WEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 962 (1114)
Q Consensus 897 ~l~~------h~-~~V~~l~~--s~d-~~-~l~s~s~D~~v~iwd~~~---~~~~~~~~~~~~~~~~~~~~~i~~v~fsp 962 (1114)
.+.. .. ..+..+|+ ++. ++ ++++...+|.+..|++.. +.. ..+.+..+.-. +.+..++..+
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~-~~~lVR~f~lg----sq~EgcvvDd 189 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYI-SGKKVRAFKMN----SQTEGMAADD 189 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCE-EEEEEEEEECS----SCEEEEEEET
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcc-cceEEEEecCC----CCcceEEEcC
Confidence 4421 11 56788888 774 44 688888899999999843 211 12222222211 3578899999
Q ss_pred CCcEEEEE-eCCeEEEEEcC-----CCceeeeeecCCC-CcCeeEEEE--CCCCC-EEEEEE-cCCeEEEEEcC-CCeee
Q 001248 963 DQIHFLVV-HETQLAIFETT-----KLECVKQWVPRES-SAPITHATF--SCDSQ-LVYACF-LDATVCVFSAA-NLKLR 1030 (1114)
Q Consensus 963 dg~~l~~~-~d~~i~iwd~~-----~~~~~~~~~~~~h-~~~v~~l~~--s~dg~-~l~s~s-~Dg~I~vwd~~-~~~~~ 1030 (1114)
....|.++ .+..|..|+.. +++.+..+.. +| ...+..|++ .++++ ||++++ .+.+..|||.. +.+.+
T Consensus 190 ~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~-g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~v 268 (355)
T 3amr_A 190 EYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG-RHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYV 268 (355)
T ss_dssp TTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS-SSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEE
T ss_pred CCCeEEEecccceEEEEeCCcCCCCCceEEEEecC-CccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEE
Confidence 88888886 45556666644 2344444322 33 347888888 56777 777777 56799999996 78888
Q ss_pred EEeC
Q 001248 1031 CRIN 1034 (1114)
Q Consensus 1031 ~~~~ 1034 (1114)
..+.
T Consensus 269 g~f~ 272 (355)
T 3amr_A 269 ADFR 272 (355)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0066 Score=73.42 Aligned_cols=207 Identities=7% Similarity=-0.055 Sum_probs=130.2
Q ss_pred CCCccEEEEeeCCCEEEEEe--CCeEEEEEcCCC----ccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc
Q 001248 818 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTF----KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 891 (1114)
Q Consensus 818 ~~~v~~v~~s~d~~~l~~~~--dg~i~iwd~~~~----~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~ 891 (1114)
...+..+++++....|.... .+.|+.+++... .....+.........|++.+.+++++++-...+.|.+.++..
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 34567899998766666665 588999998753 222223323455778999984556777777788999999875
Q ss_pred ceEEEeecccccCeeEEEEcCCCCEEEEEeC-C-CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE
Q 001248 892 DEVKSKLKGHSKRITGLAFSHALNVLVSSGA-D-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 969 (1114)
Q Consensus 892 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-D-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~ 969 (1114)
......+........+|++.|.+.+|+.+.. . +.|.+.+++...... .+ ... ......|++.+.+..|..
T Consensus 503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~--lv---~~~---l~~P~GLavD~~~~~LYw 574 (791)
T 3m0c_C 503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LV---TEN---IQWPNGITLDLLSGRLYW 574 (791)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE--EE---CSS---CSCEEEEEEETTTTEEEE
T ss_pred CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEE--EE---eCC---CCCceEEEEecCCCeEEE
Confidence 5433333334456789999998666666553 2 678888887643211 11 111 124689999987777766
Q ss_pred E--eCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCCeeeEEeC
Q 001248 970 V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 970 ~--~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s-~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
+ ....|..+++..............-.....|++. +.+|+.+. ..+.|...+..+|+.+..+.
T Consensus 575 aD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 575 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEee
Confidence 4 5568999998655443333322223345667763 44555554 55788888888886665553
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0048 Score=69.45 Aligned_cols=253 Identities=8% Similarity=-0.003 Sum_probs=139.3
Q ss_pred ceEEEEEcc-Ccceeeeccc-CceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEE----
Q 001248 753 KISRLIFTN-SGNAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL---- 826 (1114)
Q Consensus 753 ~i~~l~~s~-~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~---- 826 (1114)
....|+|+| +...|+++.. .+.|++.|+.. +.+....-.+.........++|
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~----------------------~~v~~l~~~~~~~~~~p~~ia~~~~~ 197 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKN----------------------RMLSSPLNINTIPTNRIRSIAFNKKI 197 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTT----------------------TEEEEEECCTTSSCSBEEEEEECCCB
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCC----------------------CEEEEEEccCccccCCCcEEEEeecc
Confidence 467889998 3554555444 35566655432 2222110011012335788999
Q ss_pred ---eeCCCEEEEEe-CC-------eEEEEEcCC-Cccc-----cccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEc
Q 001248 827 ---SKNDSYVMSAS-GG-------KISLFNMMT-FKTM-----ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV 889 (1114)
Q Consensus 827 ---s~d~~~l~~~~-dg-------~i~iwd~~~-~~~~-----~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~ 889 (1114)
+++|++|.++. .+ .|.+++... +... ..+.. -.....++++|+++.++++-..++.|+.+|+
T Consensus 198 ~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~ 276 (496)
T 3kya_A 198 EGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDL 276 (496)
T ss_dssp TTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECH
T ss_pred cccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEec
Confidence 99999777776 32 266665443 2221 12211 1234577889966777777778889999999
Q ss_pred c-------cceE-----------EEee--cccccCeeEEEEcCCCCEEEEE-eCCCcEEEEeCCCCc--ccccccccc--
Q 001248 890 R-------VDEV-----------KSKL--KGHSKRITGLAFSHALNVLVSS-GADSQLCVWSSDGWE--KQKNRFLQI-- 944 (1114)
Q Consensus 890 ~-------~~~~-----------~~~l--~~h~~~V~~l~~s~d~~~l~s~-s~D~~v~iwd~~~~~--~~~~~~~~~-- 944 (1114)
. ++.. ...+ .+....-+.|+|+|+|++|..+ +....|+.++.+... ......+.-
T Consensus 277 ~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~ 356 (496)
T 3kya_A 277 VDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGY 356 (496)
T ss_dssp HHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBT
T ss_pred ccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCC
Confidence 8 5543 1121 1122345789999999965444 556778886654321 100000100
Q ss_pred -CCCCCC------CCCCce-EEEEc-------cCCcEEEE-EeCCeEEEEEcCCCceeeeeecC------------C---
Q 001248 945 -PTGRTP------TAQSDT-RVQFH-------QDQIHFLV-VHETQLAIFETTKLECVKQWVPR------------E--- 993 (1114)
Q Consensus 945 -~~~~~~------~~~~i~-~v~fs-------pdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~------------~--- 993 (1114)
..+... ...... .++.. ++|.++++ .....|+.++ .++. +.++... +
T Consensus 357 g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~d 434 (496)
T 3kya_A 357 KQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDD 434 (496)
T ss_dssp TBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCC
T ss_pred CCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCC
Confidence 011100 011234 45554 45666666 5778899998 4453 3333211 1
Q ss_pred -------CCcCeeEEEECCC-CCEEEEEEcCCeEEEEEcCCCeee
Q 001248 994 -------SSAPITHATFSCD-SQLVYACFLDATVCVFSAANLKLR 1030 (1114)
Q Consensus 994 -------h~~~v~~l~~s~d-g~~l~s~s~Dg~I~vwd~~~~~~~ 1030 (1114)
.-.....|+++++ |.+.++=...++|+.++++.....
T Consensus 435 G~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 435 GDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp EETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred CCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence 1134678999987 555555555678998888765544
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0075 Score=67.87 Aligned_cols=253 Identities=9% Similarity=0.015 Sum_probs=143.1
Q ss_pred CccEEEEee-CCCEEEEEe--CCeEEEEEcCCCccccccCC---CCCCeEEEEE-------ecCCCcEEEEEeCCC----
Q 001248 820 AVPCFALSK-NDSYVMSAS--GGKISLFNMMTFKTMATFMP---PPPAATFLAF-------HPQDNNIIAIGMDDS---- 882 (1114)
Q Consensus 820 ~v~~v~~s~-d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~---~~~~i~~l~~-------sp~d~~~la~g~~dg---- 882 (1114)
....++++| +...|.++. .+.|++.|+.++........ .......++| ++ +++.|.++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence 467899998 355555554 36799999887665443332 1235899999 99 777555555443
Q ss_pred ---cEEEEEccc-ceEE-----EeecccccCeeEEEEcCC-CCEEEEEeCCCcEEEEeCC-------CCccc-----c--
Q 001248 883 ---SIQIYNVRV-DEVK-----SKLKGHSKRITGLAFSHA-LNVLVSSGADSQLCVWSSD-------GWEKQ-----K-- 938 (1114)
Q Consensus 883 ---~v~iwd~~~-~~~~-----~~l~~h~~~V~~l~~s~d-~~~l~s~s~D~~v~iwd~~-------~~~~~-----~-- 938 (1114)
.|.+++... ++.. ..+.. -....+++++|+ +.++++-..++.|..+|++ ++..- .
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred cCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 266665433 2221 12211 123467889995 5555666677889999987 44320 0
Q ss_pred ---ccccccCCCCCCCCCCceEEEEccCCcEEEEE--eCCeEEEEEcC--CCce--eeeeec----CCC---------Cc
Q 001248 939 ---NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETT--KLEC--VKQWVP----RES---------SA 996 (1114)
Q Consensus 939 ---~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~--~d~~i~iwd~~--~~~~--~~~~~~----~~h---------~~ 996 (1114)
......... .....++|+|+|++|.++ ....|+.++.. ++.. ...+.. .++ -.
T Consensus 298 g~~~~l~~~~~~-----~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~ 372 (496)
T 3kya_A 298 NTFKQLFTIADP-----SWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMN 372 (496)
T ss_dssp TTEEEEEECSSS-----SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCS
T ss_pred cccceeEecCCC-----CCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccC
Confidence 011111111 235799999999965554 56788886543 3321 011111 111 12
Q ss_pred Cee-EEEEC-------CCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcc-----------cCCC---CCCCCccceEEE
Q 001248 997 PIT-HATFS-------CDSQLVYACFLDATVCVFSAANLKLRCRINPSAY-----------LPAG---VSSSNVHPLVIA 1054 (1114)
Q Consensus 997 ~v~-~l~~s-------~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~-----------~~~~---~~~~~v~~~~~~ 1054 (1114)
... .++.. ++|.+.++=...++|+.++ .+|... ++..... ...| ....--.|..++
T Consensus 373 ~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v~-TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIa 450 (496)
T 3kya_A 373 NPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIVS-TYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLV 450 (496)
T ss_dssp SEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBEE-EEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEE
T ss_pred CCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCEE-EEecccccccccCccccccCCCCchhhhhcCCCcEEE
Confidence 344 45554 4566666666678999999 566433 3321100 0011 011223477899
Q ss_pred ecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1055 AHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1055 ~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
++++++.+.++=.....|+.+++....
T Consensus 451 vd~~~g~lyVaD~~N~rIrki~~~~~~ 477 (496)
T 3kya_A 451 YDDVKEMFYVHDQVGHTIRTISMEQEE 477 (496)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECCCC
T ss_pred EECCCCEEEEEeCCCCEEEEEECCCCc
Confidence 998435555555566789999887765
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.72 E-value=0.011 Score=63.42 Aligned_cols=210 Identities=11% Similarity=0.015 Sum_probs=123.4
Q ss_pred CCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeE-EE
Q 001248 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF-GV 437 (1114)
Q Consensus 359 ~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-as 437 (1114)
..+.+++|.+.+..|..+-...+.|..+++.++..... ++...-.....+++.+.+..| ++
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~------------------~~~~~l~~p~glavd~~~g~ly~~ 96 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN------------------VVVSGLLSPDGLACDWLGEKLYWT 96 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE------------------EEEECCSCCCEEEEETTTTEEEEE
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE------------------EEcCCCCCccEEEEEcCCCeEEEE
Confidence 45679999997776777777778899999876532110 011112356789999755544 44
Q ss_pred EeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEe-eccccCEEEEe
Q 001248 438 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVC 516 (1114)
Q Consensus 438 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~ 516 (1114)
-...+.|.+++.+...... .+.........+++.|.+..+++.-.+..+.|...++. |.....+ ...-.....++
T Consensus 97 d~~~~~I~~~~~dG~~~~~---l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~~~~l~~Pngla 172 (318)
T 3sov_A 97 DSETNRIEVSNLDGSLRKV---LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPNGLT 172 (318)
T ss_dssp ETTTTEEEEEETTSCSCEE---EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEEEE
T ss_pred ECCCCEEEEEECCCCcEEE---EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeEEEEECCCCCccEEE
Confidence 4566789999987643221 12233456789999987775333322345778888865 4333333 22334567888
Q ss_pred eccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCC
Q 001248 517 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF 596 (1114)
Q Consensus 517 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 596 (1114)
+++.. +.+.++-+..+.|..+|++.................+++.. +..+.+-...+
T Consensus 173 vd~~~-~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~----------------------~~lywtd~~~~ 229 (318)
T 3sov_A 173 LDYEE-QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE----------------------DILYWTDWSTH 229 (318)
T ss_dssp EETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET----------------------TEEEEEETTTT
T ss_pred EeccC-CEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC----------------------CEEEEEecCCC
Confidence 76543 34555666678899998875333222221222233333321 12344444677
Q ss_pred eEEEEECCCcceEEEec
Q 001248 597 SIKFWDMDSVQLLTSID 613 (1114)
Q Consensus 597 ~i~iwd~~~~~~~~~~~ 613 (1114)
.|..++..+|+....+.
T Consensus 230 ~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 230 SILACNKYTGEGLREIH 246 (318)
T ss_dssp EEEEEETTTCCSCEEEE
T ss_pred eEEEEECCCCCceEEEe
Confidence 88888887776655553
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0066 Score=64.26 Aligned_cols=192 Identities=11% Similarity=0.108 Sum_probs=118.5
Q ss_pred CcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCC----CC---EEEEEe-C--CCcEEEEeCC--CCccccc
Q 001248 872 NNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA----LN---VLVSSG-A--DSQLCVWSSD--GWEKQKN 939 (1114)
Q Consensus 872 ~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d----~~---~l~s~s-~--D~~v~iwd~~--~~~~~~~ 939 (1114)
..+++.....+-+.+||+ +|+.+..+.. +.++.|..-|+ |+ ++++.. . +++|.+|+++ +++....
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i 116 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSM 116 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEEC
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeec
Confidence 345555566788999999 7888888864 56777776653 22 233333 3 5789999774 3221111
Q ss_pred cccccCCCCCCCCCCceEEEE--ccC-Cc-EEEE-EeCCeEEEEEc-------CCCceeeeeecCCCCcCeeEEEECCCC
Q 001248 940 RFLQIPTGRTPTAQSDTRVQF--HQD-QI-HFLV-VHETQLAIFET-------TKLECVKQWVPRESSAPITHATFSCDS 1007 (1114)
Q Consensus 940 ~~~~~~~~~~~~~~~i~~v~f--spd-g~-~l~~-~~d~~i~iwd~-------~~~~~~~~~~~~~h~~~v~~l~~s~dg 1007 (1114)
......-+ .....+..+|+ +|. ++ ++++ ..++.+..|++ .+.+.++++.. .+.+..+...+..
T Consensus 117 ~~~~~pv~--t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l---gsq~EgcvvDd~~ 191 (355)
T 3amr_A 117 TDPDHPIA--TAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM---NSQTEGMAADDEY 191 (355)
T ss_dssp SCTTSCEE--CCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC---SSCEEEEEEETTT
T ss_pred cccccCcC--CCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC---CCCcceEEEcCCC
Confidence 00000000 00135677887 774 54 4444 57889999888 33466777765 3578899999999
Q ss_pred CEEEEEEcCCeEEEEEcC-----CCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCC-eEEEEe-CCCcEEEEecc
Q 001248 1008 QLVYACFLDATVCVFSAA-----NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGL-SDGGVHVFEPL 1078 (1114)
Q Consensus 1008 ~~l~s~s~Dg~I~vwd~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~-~l~s~~-~Dg~v~vW~i~ 1078 (1114)
.+|+.+-+|.-|..++.+ +++++..+.. ++-...+.-+++-..+ +++ +|++.+ .++++.|||..
T Consensus 192 g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~------g~l~aDvEGLai~~~~-~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 192 GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG------RHLTRDIEGLTIYYAA-DGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS------SSBCSCEEEEEEEECG-GGCEEEEEEEGGGTEEEEEESS
T ss_pred CeEEEecccceEEEEeCCcCCCCCceEEEEecC------CccccCcceEEEEecC-CCCEEEEEEcCCCCEEEEEECC
Confidence 999999999777777755 4556655531 1111124434444344 344 666665 67899999996
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.015 Score=60.92 Aligned_cols=203 Identities=11% Similarity=0.061 Sum_probs=124.0
Q ss_pred CCCccEEEEeeCCCEEEEEe--CCeEEEEEcCCCcccc-ccCC----CC--CCeEEEEE---ecCCCcEEEEEeC-----
Q 001248 818 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMA-TFMP----PP--PAATFLAF---HPQDNNIIAIGMD----- 880 (1114)
Q Consensus 818 ~~~v~~v~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~-~~~~----~~--~~i~~l~~---sp~d~~~la~g~~----- 880 (1114)
..-..+++|.+....+..++ .++|..|+...+.... .+.+ .. ..+..+.| .| +++++++...
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~ 90 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFN 90 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTC
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccccccc
Confidence 33456789988666666665 8999999997554322 2322 11 13578999 68 6888876442
Q ss_pred --------CCcEEEEEcc---cceEEEeec--ccc-----------cCeeEEEEcCCCCEEEEEeCC-CcEEEEeCCCCc
Q 001248 881 --------DSSIQIYNVR---VDEVKSKLK--GHS-----------KRITGLAFSHALNVLVSSGAD-SQLCVWSSDGWE 935 (1114)
Q Consensus 881 --------dg~v~iwd~~---~~~~~~~l~--~h~-----------~~V~~l~~s~d~~~l~s~s~D-~~v~iwd~~~~~ 935 (1114)
+..|..||+. +++.+.... +.. .....++..++|+..++++.- +.|...+.+...
T Consensus 91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~ 170 (334)
T 2p9w_A 91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT 170 (334)
T ss_dssp TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC
T ss_pred ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE
Confidence 6789999999 777664432 211 247899999999999998888 777666666532
Q ss_pred cccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCeEEEEEcCCCceeeeeecC--CC---CcCeeEE-EECCCCC
Q 001248 936 KQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPR--ES---SAPITHA-TFSCDSQ 1008 (1114)
Q Consensus 936 ~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~--~h---~~~v~~l-~~s~dg~ 1008 (1114)
.... .+..... ......+.++++|||+.|++. ..+.|..+|+.+.... .+... +. -.....| ..-.+|+
T Consensus 171 ~~~~-~~~~~~~--~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~-~v~~~~~G~~~~~~~~dgilp~~~~G~ 246 (334)
T 2p9w_A 171 VSTF-AWESGNG--GQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAW-PEPVKINGDFGTLSGTEKIVTVPVGNE 246 (334)
T ss_dssp EEEE-EECCCCS--SSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCC-CEECEESSCCCCCTTEEEEEEEEETTE
T ss_pred Eeee-eecCCCc--ccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcce-eecccccCCcccccCcccccccccCCE
Confidence 2111 1111111 111356899999999988883 5889999998843220 12111 11 1123333 3334777
Q ss_pred E-EEEEEcCCeEEEEEcC
Q 001248 1009 L-VYACFLDATVCVFSAA 1025 (1114)
Q Consensus 1009 ~-l~s~s~Dg~I~vwd~~ 1025 (1114)
. |++.+..+.+.+.+-+
T Consensus 247 vllV~~~~~~~~~l~S~D 264 (334)
T 2p9w_A 247 SVLVGARAPYAISFRSWD 264 (334)
T ss_dssp EEEEEEETTEEEEEECSS
T ss_pred EEEEEcCCCCEEEEECCC
Confidence 7 4445455655555543
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.062 Score=64.98 Aligned_cols=208 Identities=11% Similarity=0.007 Sum_probs=115.0
Q ss_pred CCCeeEEEEcCCCCeEE-EEeCCCeEEEEEccCCcee-eeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCC
Q 001248 420 GVSVNRVIWSPDGSLFG-VAYSRHIVQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT 497 (1114)
Q Consensus 420 ~~~V~~l~~spdg~~la-s~~~dg~i~iwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~ 497 (1114)
...+..|+|.+.+..|. +-...+.|+.+++...... .....+.........|++.+.++. ++++-...+.|.+.++.
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~-LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTK 501 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETT
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCc-EEEEecCCCeEEEEeCC
Confidence 34678999998555554 4455678888888753210 011123334456778999988876 45666677899999977
Q ss_pred CCcceeEeeccccCEEEEeeccCCCceEEEEEecC-CeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccc
Q 001248 498 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD-GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 576 (1114)
Q Consensus 498 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~ 576 (1114)
.......+.........|++.+.. +.+.++-... +.|...+++.................|++.+.
T Consensus 502 G~~~~~l~~~~l~~P~gIaVDp~~-g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~------------ 568 (791)
T 3m0c_C 502 GVKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLL------------ 568 (791)
T ss_dssp SSSEEEEEECTTCCEEEEEEETTT-TEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETT------------
T ss_pred CCeEEEEEeCCCCCcceEEEecCC-CCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecC------------
Confidence 444333333344567788876543 3344443233 67777777643333222222234444555443
Q ss_pred eeEEEecCCCCEEEEEe-CCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCc
Q 001248 577 LGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI 651 (1114)
Q Consensus 577 v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~ 651 (1114)
+..|+.+. ..+.|...++........+...........|++.. +.++++-...+.|...+..++.
T Consensus 569 ---------~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 569 ---------SGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGS 634 (791)
T ss_dssp ---------TTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred ---------CCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCc
Confidence 33444443 56788888886544444443322222334566532 2344444456778888877773
|
| >2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00017 Score=57.78 Aligned_cols=36 Identities=31% Similarity=0.420 Sum_probs=33.1
Q ss_pred CCcchHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCc
Q 001248 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFF 36 (1114)
Q Consensus 1 ~~~~~~~v~~li~q~L~~~g~~~s~~~l~~Esg~~~ 36 (1114)
|+....||+.||+.||.|.||..||-+|++||+|.-
T Consensus 1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~ 36 (90)
T 2xtc_A 1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQ 36 (90)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGG
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCc
Confidence 788899999999999999999999999999999863
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.13 Score=55.99 Aligned_cols=109 Identities=16% Similarity=0.136 Sum_probs=63.3
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCC---CC
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---GS 433 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~ 433 (1114)
.-...+.++|.|||+ ++++ ..+|.|.+++ .++......+. +..........|+|+|| +.
T Consensus 29 ~l~~P~~ia~~pdG~-l~V~-e~~g~I~~i~--~g~~~~~~~~~--------------v~~~g~~~p~gia~~pdf~~~g 90 (352)
T 2ism_A 29 GLEVPWALAFLPDGG-MLIA-ERPGRIRLFR--EGRLSTYAELS--------------VYHRGESGLLGLALHPRFPQEP 90 (352)
T ss_dssp CCSCEEEEEECTTSC-EEEE-ETTTEEEEEE--TTEEEEEEECC--------------CCCSTTCSEEEEEECTTTTTSC
T ss_pred CCCCceEEEEcCCCe-EEEE-eCCCeEEEEE--CCCccEeecce--------------EeecCCCCceeEEECCCCCCCC
Confidence 445689999999998 4555 5569999998 44321110000 12222346889999998 55
Q ss_pred eEEEEeC-C-----CeEEEEEccCCce--eeeeE-eec---cccCCeeEEEecCCCCeeEEEEe
Q 001248 434 LFGVAYS-R-----HIVQIYSYHGGDE--VRQHL-EID---AHVGGVNDIAFSHPNKQLCVITC 485 (1114)
Q Consensus 434 ~las~~~-d-----g~i~iwd~~~~~~--~~~~~-~l~---~h~~~V~~v~~s~d~~~~~l~s~ 485 (1114)
+|.++.. . +.|..|+...+.. .+.+. .+. +.......++|.|||. +.++.
T Consensus 91 ~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~--Lyv~~ 152 (352)
T 2ism_A 91 YVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM--LYVTT 152 (352)
T ss_dssp EEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC--EEEEC
T ss_pred EEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC--EEEEE
Confidence 5554433 2 5688888775421 11111 122 1112346899999996 44443
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0034 Score=75.51 Aligned_cols=203 Identities=11% Similarity=0.040 Sum_probs=107.9
Q ss_pred CeeEEEEcCCCCeEEEEe-CCCeEEEEEccCC---ceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCC
Q 001248 422 SVNRVIWSPDGSLFGVAY-SRHIVQIYSYHGG---DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT 497 (1114)
Q Consensus 422 ~V~~l~~spdg~~las~~-~dg~i~iwd~~~~---~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~ 497 (1114)
.+..|+|++++..|..+. ..+.|..+++.+. ..... .+.........|++.+.+.. ++++-...+.|.+.++.
T Consensus 407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~--~i~~~~~~P~glavD~~~g~-LY~tD~~~~~I~v~d~d 483 (699)
T 1n7d_A 407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT--VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTK 483 (699)
T ss_dssp TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCC--BCCSCC--CCCEECCCSSSB-CEECCTTTSCEEEEBSS
T ss_pred ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEE--EEeCCCCCcceEEEEeeCCc-EEEEeccCCeEEEEecC
Confidence 567899999777666654 4578999998751 11111 12112224567888866664 45555667889999976
Q ss_pred CCcceeEeeccccCEEEEeeccCCCceEEEEEecC-CeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccc
Q 001248 498 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD-GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 576 (1114)
Q Consensus 498 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~ 576 (1114)
.......+.........+++.+.. +.++++-... +.|...++..................|
T Consensus 484 g~~~~~l~~~~~~~P~giavDp~~-g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGl----------------- 545 (699)
T 1n7d_A 484 GVKRKTLFREQGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGI----------------- 545 (699)
T ss_dssp SCCEEEECCCSSCCCCCEECCSSS-SCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCE-----------------
T ss_pred CCceEEEEeCCCCCcceEEEccCC-CcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEE-----------------
Confidence 544333333222344566654432 2333333222 566666654322221111112223334
Q ss_pred eeEEEecCCCCEE-EEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 577 LGVVQFDTTKNRF-LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 577 v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
++++++..| ++-+..+.|.++++........+...........+++..+ .++++....+.|..++..++
T Consensus 546 ----avd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 546 ----TLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTG 615 (699)
T ss_dssp ----EECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTE
T ss_pred ----EEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCC
Confidence 444443334 4444667899999865433333322222223456677554 45555566788999988777
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.056 Score=58.91 Aligned_cols=243 Identities=12% Similarity=0.092 Sum_probs=127.5
Q ss_pred CccEEEEeeCCC-EEEEEeCCeEEEEEcCCCc--ccccc----CCCCCCeEEEEEecC---CCcEEEEEeC-------CC
Q 001248 820 AVPCFALSKNDS-YVMSASGGKISLFNMMTFK--TMATF----MPPPPAATFLAFHPQ---DNNIIAIGMD-------DS 882 (1114)
Q Consensus 820 ~v~~v~~s~d~~-~l~~~~dg~i~iwd~~~~~--~~~~~----~~~~~~i~~l~~sp~---d~~~la~g~~-------dg 882 (1114)
....+++.|||+ ++++-..|.|++++..... .+..+ .........++|+|+ ++.+.++-+. ..
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~ 98 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT 98 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence 467899999999 6665558999999854221 11111 112345789999993 3554444332 23
Q ss_pred cEEEEEcccc-------eEE-Eeec-----ccccCeeEEEEcCCCCEEEEEeCC-------------CcEEEEeCCCCcc
Q 001248 883 SIQIYNVRVD-------EVK-SKLK-----GHSKRITGLAFSHALNVLVSSGAD-------------SQLCVWSSDGWEK 936 (1114)
Q Consensus 883 ~v~iwd~~~~-------~~~-~~l~-----~h~~~V~~l~~s~d~~~l~s~s~D-------------~~v~iwd~~~~~~ 936 (1114)
.|..|++..+ +.+ ..+. .|. -..|+|.|||.+.++.+.. +.|.-++.+..-.
T Consensus 99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred EEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 5666666432 111 1121 132 3579999999766665432 3465566553200
Q ss_pred ccc--------cccccCCCCCCCCCCceEEEEcc-CCcEEEE--EeCCeEEEEEcCCCcee-------------------
Q 001248 937 QKN--------RFLQIPTGRTPTAQSDTRVQFHQ-DQIHFLV--VHETQLAIFETTKLECV------------------- 986 (1114)
Q Consensus 937 ~~~--------~~~~~~~~~~~~~~~i~~v~fsp-dg~~l~~--~~d~~i~iwd~~~~~~~------------------- 986 (1114)
... .......++ .....++|.| +|.+.++ +.++.=.|.-+..+.-.
T Consensus 177 ~~npf~~~~~~~~~i~a~G~----rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~ 252 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGI----RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEA 252 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECC----SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTC
T ss_pred CCCCCcCCCCCCccEEEEcC----cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcc
Confidence 000 000001111 1357899999 6766666 22322233322222110
Q ss_pred ----------eeeecCCCCcCeeEEEECC-------CCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCcc
Q 001248 987 ----------KQWVPRESSAPITHATFSC-------DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVH 1049 (1114)
Q Consensus 987 ----------~~~~~~~h~~~v~~l~~s~-------dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 1049 (1114)
..+.. .+...+..++|.. +|.++++.-..+.|...+++.++...... ++. + ..-.
T Consensus 253 ~~~~~~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~---~~~-~---~~~r 324 (353)
T 2g8s_A 253 KGEIVAGTEQPVFYW-KDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGR---ILT-D---RGQR 324 (353)
T ss_dssp CBSSCTTSCCCSEEE-SSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE---ESG-G---GCCC
T ss_pred cCCCCCCccCCeEEe-CCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEE---ccc-C---CCCc
Confidence 00000 1233567788864 46677766677888888887765443321 111 1 1134
Q ss_pred ceEEEecCCCCCeEEEEeCCCcEEEEecc
Q 001248 1050 PLVIAAHPQEPNEFALGLSDGGVHVFEPL 1078 (1114)
Q Consensus 1050 ~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~ 1078 (1114)
+..+++.| ||.+.++.. ++.=+||+|.
T Consensus 325 p~~v~~~p-dG~lyv~td-~~~g~I~ri~ 351 (353)
T 2g8s_A 325 IRDVRTGP-DGYLYVLTD-ESSGELLKVS 351 (353)
T ss_dssp EEEEEECT-TSCEEEEEC-STTEEEEEEE
T ss_pred eeEEEECC-CCcEEEEEe-CCCCEEEEEe
Confidence 66899999 677655433 2333566653
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.098 Score=56.92 Aligned_cols=231 Identities=11% Similarity=0.092 Sum_probs=124.7
Q ss_pred CCccEEEEeeCCCEEEEEeCCeEEEEEcCCCc-ccccc---CCCCCCeEEEEEecC---CCcEEEEEeC---C----CcE
Q 001248 819 EAVPCFALSKNDSYVMSASGGKISLFNMMTFK-TMATF---MPPPPAATFLAFHPQ---DNNIIAIGMD---D----SSI 884 (1114)
Q Consensus 819 ~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~-~~~~~---~~~~~~i~~l~~sp~---d~~~la~g~~---d----g~v 884 (1114)
.....+++.|||+++++-.+|.|++++. +++ .+..+ .........++|+|+ ++.+.++-+. + ..|
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 3467899999998777666899999974 443 22211 122356889999993 3555554432 3 567
Q ss_pred EEEEcccc-------eEE-Eeec---ccccCeeEEEEcCCCCEEEEEeCC-------------CcEEEEeCCCCccccc-
Q 001248 885 QIYNVRVD-------EVK-SKLK---GHSKRITGLAFSHALNVLVSSGAD-------------SQLCVWSSDGWEKQKN- 939 (1114)
Q Consensus 885 ~iwd~~~~-------~~~-~~l~---~h~~~V~~l~~s~d~~~l~s~s~D-------------~~v~iwd~~~~~~~~~- 939 (1114)
..|+.... +.+ ..+. .|. ...|+|.|||.++++.+.. +.|.-++.+.. ....
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~--~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~-~p~~n 184 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHN--GGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR-PPADN 184 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCC--CCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC-CCTTS
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcC--CceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC-CCCCC
Confidence 77776543 111 1122 232 4679999999877775432 34544444431 0000
Q ss_pred ---cccccCCCCCCCCCCceEEEEcc-CCcEEEE--EeCC--eEEEEEcCCCce----------------eeeeecCCCC
Q 001248 940 ---RFLQIPTGRTPTAQSDTRVQFHQ-DQIHFLV--VHET--QLAIFETTKLEC----------------VKQWVPRESS 995 (1114)
Q Consensus 940 ---~~~~~~~~~~~~~~~i~~v~fsp-dg~~l~~--~~d~--~i~iwd~~~~~~----------------~~~~~~~~h~ 995 (1114)
.......++ .....++|+| +|.+.++ +.+. .|.+. ..+.- ...+......
T Consensus 185 pf~~~~i~a~G~----rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ 258 (354)
T 3a9g_A 185 PFPNSPIWSYGH----RNPQGIDWHRASGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKAGRGEFVDPVIDTGSET 258 (354)
T ss_dssp SSTTCCEEEECC----SCCCEEEECTTTCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCCCCTTSCCCSEECTTCC
T ss_pred CCCCCcEEEEcc----CCcceEEEeCCCCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCCCCCCCcCCEeecCCCC
Confidence 000001111 1357899999 6776666 2232 23332 22220 0001110113
Q ss_pred cCeeEEEEC-------CCCCEEEEEEcCCeEEEEEcCCC-eeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEe
Q 001248 996 APITHATFS-------CDSQLVYACFLDATVCVFSAANL-KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1067 (1114)
Q Consensus 996 ~~v~~l~~s-------~dg~~l~s~s~Dg~I~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~ 1067 (1114)
..+..++|. .+|.++++....+.|...++... +...... ++. + ..-.+..+++.| ||.+.++..
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~---~~~-~---~~~rp~~v~~~p-DG~lyv~~~ 330 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKIST---FFK-N---VFGRLRDVVIDD-DGGILISTS 330 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEE---ECT-T---TSCCEEEEEECT-TSCEEEEEC
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceee---ecc-C---CCCCeeEEEECC-CCcEEEEEe
Confidence 467888884 56777766666778888888753 3321111 111 1 113456899988 676666553
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.32 Score=52.82 Aligned_cols=109 Identities=17% Similarity=0.122 Sum_probs=62.3
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCC---CC
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---GS 433 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~ 433 (1114)
.-...+.++|.|||+ |+++ ..+|.|++++ .+++ .....+. +..........|+|+|+ +.
T Consensus 27 ~l~~P~~ia~~pdG~-l~V~-e~~g~I~~~d-~~G~-~~~~~~~--------------v~~~g~~g~~gia~~pdf~~~g 88 (354)
T 3a9g_A 27 DLEVPWSIAPLGGGR-YLVT-ERPGRLVLIS-PSGK-KLVASFD--------------VANVGEAGLLGLALHPEFPKKS 88 (354)
T ss_dssp SCSCEEEEEEEETTE-EEEE-ETTTEEEEEC-SSCE-EEEEECC--------------CCCSTTCSEEEEEECTTTTTSC
T ss_pred CCCCCeEEEEcCCCe-EEEE-eCCCEEEEEe-CCCc-eEeeccc--------------eeecCCCceeeEEeCCCCCcCC
Confidence 456789999999998 4555 5569999997 3444 1100000 11222346889999998 55
Q ss_pred eEEEEeC----C----CeEEEEEccCC--ce--eeeeE-eec-cccCCeeEEEecCCCCeeEEEEe
Q 001248 434 LFGVAYS----R----HIVQIYSYHGG--DE--VRQHL-EID-AHVGGVNDIAFSHPNKQLCVITC 485 (1114)
Q Consensus 434 ~las~~~----d----g~i~iwd~~~~--~~--~~~~~-~l~-~h~~~V~~v~~s~d~~~~~l~s~ 485 (1114)
+|.++.. + ..|..|+...+ .. .+.+. .+. +.......|+|.|||. +.++.
T Consensus 89 ~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~--Lyvt~ 152 (354)
T 3a9g_A 89 WVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM--LYITT 152 (354)
T ss_dssp EEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC--EEEEC
T ss_pred EEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc--EEEEE
Confidence 5544432 3 56777887654 11 11111 121 1112346899999997 44443
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.032 Score=60.90 Aligned_cols=233 Identities=12% Similarity=0.072 Sum_probs=119.4
Q ss_pred CccEEEEeeCCCEEEEEeCCeEEEEEcCCCcc--cccc---CCCCCCeEEEEEecC---CCcEEEEEeCC-----CcEEE
Q 001248 820 AVPCFALSKNDSYVMSASGGKISLFNMMTFKT--MATF---MPPPPAATFLAFHPQ---DNNIIAIGMDD-----SSIQI 886 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~--~~~~---~~~~~~i~~l~~sp~---d~~~la~g~~d-----g~v~i 886 (1114)
....+++.|||+++++-.+|.|++++ +++. +..+ .........++|+|+ ++.+.++-..+ +.|..
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r 109 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR 109 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence 46789999999977665589999998 3332 1111 122456889999993 25554444432 67888
Q ss_pred EEcccc-----eE-EEeec---ccccCeeEEEEcCCCCEEEEEeCC-------------CcEEEEeCCCCccccc-----
Q 001248 887 YNVRVD-----EV-KSKLK---GHSKRITGLAFSHALNVLVSSGAD-------------SQLCVWSSDGWEKQKN----- 939 (1114)
Q Consensus 887 wd~~~~-----~~-~~~l~---~h~~~V~~l~~s~d~~~l~s~s~D-------------~~v~iwd~~~~~~~~~----- 939 (1114)
|+...+ +. +..+. +.......|+|.|||.+.++.+.. +.|.-++.+.. ....
T Consensus 110 ~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~-~p~~npf~~ 188 (352)
T 2ism_A 110 LRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGE-PAPGNPFLG 188 (352)
T ss_dssp EEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSS-BCTTCTTTT
T ss_pred EEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCC-CCCCCcccC
Confidence 887643 11 22233 111123689999999877765422 44555555431 1000
Q ss_pred ----cccccCCCCCCCCCCceEEEEcc-CCcEEEE-EeCCeE------EEEEcCCCce----------------eeeeec
Q 001248 940 ----RFLQIPTGRTPTAQSDTRVQFHQ-DQIHFLV-VHETQL------AIFETTKLEC----------------VKQWVP 991 (1114)
Q Consensus 940 ----~~~~~~~~~~~~~~~i~~v~fsp-dg~~l~~-~~d~~i------~iwd~~~~~~----------------~~~~~~ 991 (1114)
.......++ .....++|+| +|.+.++ .....+ .+.-+..+.- ...+..
T Consensus 189 ~~~~~~~i~a~G~----rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~ 264 (352)
T 2ism_A 189 RRGARPEVYSLGH----RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW 264 (352)
T ss_dssp CTTSCTTEEEECC----SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred CCCCCccEEEEcC----CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec
Confidence 000000111 1346789999 6776666 222221 2333333320 000111
Q ss_pred CCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeE-EeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEe
Q 001248 992 RESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRC-RINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1067 (1114)
Q Consensus 992 ~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~ 1067 (1114)
.+......++| .+|.++++.-..+.|...+++...... ......++.. .-.+..+++.| ||.+.++..
T Consensus 265 -~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~-----~~rp~~v~~~p-dG~lyv~~~ 333 (352)
T 2ism_A 265 -PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSG-----FGRLREVQVGP-DGALYVTTS 333 (352)
T ss_dssp -TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEES-----SCCEEEEEECT-TSCEEEEEC
T ss_pred -CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheeccc-----CCCeeEEEECC-CCcEEEEEe
Confidence 12335667787 466666655556677777775443110 0000111111 12456788888 576665543
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.36 Score=52.09 Aligned_cols=96 Identities=10% Similarity=0.076 Sum_probs=67.8
Q ss_pred CeEEEEEcCCC---cccc-----c--cC--CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCee
Q 001248 839 GKISLFNMMTF---KTMA-----T--FM--PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT 906 (1114)
Q Consensus 839 g~i~iwd~~~~---~~~~-----~--~~--~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~ 906 (1114)
++++|.++... .... . +. ....-..++..|+ .-.++..-+.-|.|++||++++.++..-+-..+.|.
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF 304 (494)
T 1bpo_A 226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF 304 (494)
T ss_dssp CEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred cEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCceEEEEecccceeeeeecccCCceE
Confidence 78999998543 1110 0 11 1133456788888 666888889999999999999999887776777777
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 001248 907 GLAFSHALNVLVSSGADSQLCVWSSDGWE 935 (1114)
Q Consensus 907 ~l~~s~d~~~l~s~s~D~~v~iwd~~~~~ 935 (1114)
.-+......=++.....|.|.--.++...
T Consensus 305 ~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 305 VTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp EEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred EecccCCCCcEEEEccCceEEEEEEcccc
Confidence 76666665566666788887777776643
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.44 Score=51.43 Aligned_cols=248 Identities=9% Similarity=0.081 Sum_probs=153.8
Q ss_pred EEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCC
Q 001248 363 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH 442 (1114)
Q Consensus 363 ~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg 442 (1114)
+.-.+|..+ ++|.-. ..++.|+|+++..++....+ ...|..=.|-.+. .|+..+ +.
T Consensus 70 sAIMnP~~~-iiALra-g~~lQiFnle~K~klks~~~--------------------~e~VvfWkWis~~-~l~lVT-~t 125 (494)
T 1bpo_A 70 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLN-TVALVT-DN 125 (494)
T ss_dssp EEEECSSSS-CEEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCCCEEEEEETT-EEEEEC-SS
T ss_pred eeeeCCCCc-EEEEec-CCeEEEEchHHhhhhcceec--------------------CCCceEEEecCCC-eEEEEc-CC
Confidence 455678777 566654 78999999999888765321 2256667775443 455443 45
Q ss_pred eEEEEEccCCceeeeeEeeccc----cCCeeEEEecCCCCeeEEEEec------CCCCEEEEeCCCCcceeEeeccccCE
Q 001248 443 IVQIYSYHGGDEVRQHLEIDAH----VGGVNDIAFSHPNKQLCVITCG------DDKTIKVWDATNGAKQYIFEGHEAPV 512 (1114)
Q Consensus 443 ~i~iwd~~~~~~~~~~~~l~~h----~~~V~~v~~s~d~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~h~~~v 512 (1114)
.|.-|++.......+ .+..| ...|..-..+++.+++ +++|= -.|.+.+|..+.+ .-+.+.||....
T Consensus 126 aVyHWsi~~~s~P~k--vFdR~~~L~~~QIInY~~d~~~kW~-~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F 201 (494)
T 1bpo_A 126 AVYHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASF 201 (494)
T ss_dssp EEEEEESSSSCCCEE--EEECCGGGTTCEEEEEEECTTSSEE-EEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEE
T ss_pred eeEEecccCCCCchh--heecchhcccceEEEEEECCCCCeE-EEEeecccCCcccceEEEeecccc-ccchheeeeeee
Confidence 699999976433222 33333 2467777888999973 33332 2467899996654 457788888777
Q ss_pred EEEeeccCCCce-EEEEEec---CCeEEEEEcCCC-CCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCC
Q 001248 513 YSVCPHHKENIQ-FIFSTAL---DGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 587 (1114)
Q Consensus 513 ~~~~~~~~~~~~-~l~s~~~---d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~ 587 (1114)
..+.+...+... ++..+.. .+.+++-++... ... ..-......+.|.|+.. ..-...+.+++.-.
T Consensus 202 ~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~---~~f~kk~vdv~fppe~~-------~DFPvamqvs~kyg 271 (494)
T 1bpo_A 202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN---QPFPKKAVDVFFPPEAQ-------NDFPVAMQISEKHD 271 (494)
T ss_dssp EEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTC---CCCCCEEEECCCCTTST-------TCCEEEEEEETTTT
T ss_pred EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCC---CCccceeeeeeCCcccc-------cCceeEEEecccCC
Confidence 666543322222 3333333 268888888543 111 11112244455555432 22334566777777
Q ss_pred EEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 588 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 588 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
.++..+.-|.|++||+.++.++..-..... .|...+......-++.....|.|.-..+...
T Consensus 272 viyviTK~G~i~lyDleTgt~i~~nrIs~~--~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 272 VVFLITKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred EEEEEecCceEEEEecccceeeeeecccCC--ceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 899999999999999999999987765433 4544444444445555567787777666554
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.019 Score=60.21 Aligned_cols=168 Identities=11% Similarity=0.039 Sum_probs=107.7
Q ss_pred ccCeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCccccccccccCCCCC---CCCCCceEEEE---ccCCcEEEEEe---
Q 001248 902 SKRITGLAFSHA-LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT---PTAQSDTRVQF---HQDQIHFLVVH--- 971 (1114)
Q Consensus 902 ~~~V~~l~~s~d-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~---~~~~~i~~v~f---spdg~~l~~~~--- 971 (1114)
...--++.|.+. +.++++.-..++|..|+...+..... ...+.. .....+..+.+ .|+|+++++..
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~----~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~ 87 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV----VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK 87 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE----CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE----ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence 333457889774 44455555899999999975432211 122110 11123578999 68888888643
Q ss_pred -----------CCeEEEEEcC---CCceeeeeecCCC-----------CcCeeEEEECCCCCEEEEEEcC-CeEEEEEcC
Q 001248 972 -----------ETQLAIFETT---KLECVKQWVPRES-----------SAPITHATFSCDSQLVYACFLD-ATVCVFSAA 1025 (1114)
Q Consensus 972 -----------d~~i~iwd~~---~~~~~~~~~~~~h-----------~~~v~~l~~s~dg~~l~s~s~D-g~I~vwd~~ 1025 (1114)
+..|..||+. +++.+....+... ......++..++|+.-++++.- +.|...+.+
T Consensus 88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd 167 (334)
T 2p9w_A 88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD 167 (334)
T ss_dssp TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence 5779999999 7877655443211 1247899999999999988888 887777765
Q ss_pred CCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccC
Q 001248 1026 NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1026 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~ 1079 (1114)
... +..+... .+... ...-+..++++| |+++|++...+|.|..+|+.+
T Consensus 168 G~~-~~~~~~~--~~~~~--~~~G~nGIv~~p-dg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 168 GKT-VSTFAWE--SGNGG--QRPGYSGITFDP-HSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp SCC-EEEEEEC--CCCSS--SCCSCSEEEEET-TTTEEEEESSSSSEEEEECSS
T ss_pred CCE-Eeeeeec--CCCcc--cccCcceEEEeC-CCCEEEEEcCCCeEEEEcCCC
Confidence 442 2222100 11111 112233799999 688888887799999999883
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.036 Score=59.78 Aligned_cols=108 Identities=11% Similarity=0.076 Sum_probs=80.2
Q ss_pred EEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCC----CCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccce------
Q 001248 824 FALSKNDSYVMSASGGKISLFNMMTFKTMATFMPP----PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE------ 893 (1114)
Q Consensus 824 v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~----~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~------ 893 (1114)
.....+|..++.+.++.||.-++......+.+... -..|..+..+| +|++||..+ +..|.|-.+..+.
T Consensus 26 ~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~ 103 (452)
T 3pbp_A 26 IFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDV 103 (452)
T ss_dssp EEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCH
T ss_pred EEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCccc
Confidence 35567888999999999999998754444444432 23688899999 999999886 4589998887321
Q ss_pred ------EEEeecc------cccCeeEEEEcCC---CCEEEEEeCCCcEEEEeCCC
Q 001248 894 ------VKSKLKG------HSKRITGLAFSHA---LNVLVSSGADSQLCVWSSDG 933 (1114)
Q Consensus 894 ------~~~~l~~------h~~~V~~l~~s~d---~~~l~s~s~D~~v~iwd~~~ 933 (1114)
....+.- ...+|..+.|+|- +..|++-..|++|++||+..
T Consensus 104 ~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 104 SIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp HHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred ccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 0112211 2567999999995 46899999999999999986
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.097 Score=55.78 Aligned_cols=225 Identities=10% Similarity=0.039 Sum_probs=118.5
Q ss_pred CEEEEEe---CCeEEEEEcCCCccc--cccCCCCCCeEEEEEecCCCcEEEEEeCC----CcEEEEEcccce--EEEeec
Q 001248 831 SYVMSAS---GGKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDD----SSIQIYNVRVDE--VKSKLK 899 (1114)
Q Consensus 831 ~~l~~~~---dg~i~iwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~la~g~~d----g~v~iwd~~~~~--~~~~l~ 899 (1114)
.+++.|+ ...+.+||..+.+-. ..+........++. - ++.+++.|+.+ ..+.+||..+++ .+..+.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~-~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--W-DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--E-TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--E-CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 3455554 257999998875432 22222222222232 2 67788888865 578899988754 333332
Q ss_pred ccccCeeEEEEcCCCCEEEEEeCC------CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-e-
Q 001248 900 GHSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H- 971 (1114)
Q Consensus 900 ~h~~~V~~l~~s~d~~~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~- 971 (1114)
.....-..+.+ ++++++.|+.+ ..+.+||..+.+= ..+...... ..-..++ .-++++++.+ .
T Consensus 90 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W---~~~~~~p~~----r~~~~~~-~~~~~iyv~GG~~ 159 (306)
T 3ii7_A 90 TPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESW---HTKPSMLTQ----RCSHGMV-EANGLIYVCGGSL 159 (306)
T ss_dssp SCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEE---EEECCCSSC----CBSCEEE-EETTEEEEECCEE
T ss_pred ccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCce---EeCCCCcCC----cceeEEE-EECCEEEEECCCC
Confidence 22222222233 67788888765 4588999887532 222111111 0112222 2366666653 2
Q ss_pred --------CCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcC-----CeEEEEEcCCCeeeEEeCCCcc
Q 001248 972 --------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRINPSAY 1038 (1114)
Q Consensus 972 --------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D-----g~I~vwd~~~~~~~~~~~~~~~ 1038 (1114)
-..+.+||..+.+-...-.... ...-.+++. -++++++.|+.+ ..+.+||..+.+-... . .
T Consensus 160 ~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~-~---~ 233 (306)
T 3ii7_A 160 GNNVSGRVLNSCEVYDPATETWTELCPMIE-ARKNHGLVF-VKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV-S---P 233 (306)
T ss_dssp SCTTTCEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEE-ETTEEEEECCEETTEEBCCEEEEETTTTEEEEC-C---C
T ss_pred CCCCcccccceEEEeCCCCCeEEECCCccc-hhhcceEEE-ECCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC-C---C
Confidence 3458899998875433221111 111112222 266777776654 3589999988764432 1 1
Q ss_pred cCCCCCCCCccceEEEecCCCCCeEEEEeCC-----CcEEEEeccCCC
Q 001248 1039 LPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----GGVHVFEPLESE 1081 (1114)
Q Consensus 1039 ~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~D-----g~v~vW~i~~~~ 1081 (1114)
++...... +++.. ++.+++.|+.+ ..+.++|+.+.+
T Consensus 234 ~p~~r~~~-----~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 234 MPWKGVTV-----KCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp CSCCBSCC-----EEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred CCCCccce-----eEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 22221111 22222 46788888855 568888887765
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.1 Score=55.41 Aligned_cols=227 Identities=10% Similarity=0.064 Sum_probs=118.0
Q ss_pred CCCEEEEEe-C------CeEEEEEcCCCcccc--ccCCCCCCeEEEEEecCCCcEEEEEeCC-----CcEEEEEcccce-
Q 001248 829 NDSYVMSAS-G------GKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDD-----SSIQIYNVRVDE- 893 (1114)
Q Consensus 829 d~~~l~~~~-d------g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~la~g~~d-----g~v~iwd~~~~~- 893 (1114)
++..++.|+ . ..+.+||..+.+-.. .+....... +++. . ++.+++.|+.+ ..+.+||..+++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~ 90 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYV-ASVS-L-HDRIYVIGGYDGRSRLSSVECLDYTADED 90 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-E-TTEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccc-cEEE-E-CCEEEEEcCCCCCccCceEEEEECCCCCC
Confidence 445555554 2 358899987654322 222111112 2222 3 67888888865 368999987754
Q ss_pred ----EEEeecccccCeeEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCC
Q 001248 894 ----VKSKLKGHSKRITGLAFSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ 964 (1114)
Q Consensus 894 ----~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg 964 (1114)
.+..+......-.++.+ ++++++.|+.++ .+.+||+.+.+= ..+....... .-..++ .-++
T Consensus 91 ~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W---~~~~~~p~~r----~~~~~~-~~~~ 160 (301)
T 2vpj_A 91 GVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQW---SMLGDMQTAR----EGAGLV-VASG 160 (301)
T ss_dssp CCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEE---EEEEECSSCC----BSCEEE-EETT
T ss_pred CeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeE---EECCCCCCCc----ccceEE-EECC
Confidence 33333222222222223 677777777543 588888877432 2221111110 111222 2366
Q ss_pred cEEEEE-eC-----CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcC-----CeEEEEEcCCCeeeEEe
Q 001248 965 IHFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRI 1033 (1114)
Q Consensus 965 ~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D-----g~I~vwd~~~~~~~~~~ 1033 (1114)
+.++.+ .+ ..+.+||..+.+-...-........-..+. -++++++.|+.+ ..+.+||..+.+-...-
T Consensus 161 ~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 238 (301)
T 2vpj_A 161 VIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVT 238 (301)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred EEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECC
Confidence 666663 32 468899988775443321111111112222 267777777764 46899999988755332
Q ss_pred CCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCC-----CcEEEEeccCCC
Q 001248 1034 NPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----GGVHVFEPLESE 1081 (1114)
Q Consensus 1034 ~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~D-----g~v~vW~i~~~~ 1081 (1114)
. ++..... . +++.. ++++++.|+.+ ..+.++|+.+.+
T Consensus 239 ~----~p~~r~~---~--~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 239 S----MTTPRCY---V--GATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp C----CSSCCBS---C--EEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred C----CCCcccc---e--eEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 1 2222111 1 22222 46788888766 357788887754
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.19 Score=53.38 Aligned_cols=230 Identities=12% Similarity=0.124 Sum_probs=118.9
Q ss_pred CCCEEEEEe-C----CeEEEEEcCCCcccc--ccCCCCCCeEEEEEecCCCcEEEEEeCCC-----cEEEEEcccce--E
Q 001248 829 NDSYVMSAS-G----GKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVDE--V 894 (1114)
Q Consensus 829 d~~~l~~~~-d----g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~la~g~~dg-----~v~iwd~~~~~--~ 894 (1114)
++..++.|+ + ..+..||..+.+-.. .+....... +++. - ++.+++.|+.++ .+.+||..+.+ .
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~ 91 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRA-GMVY-M-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTS 91 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-E-TTEEEEESCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccc-eEEE-E-CCEEEEEeCcCCCccccceEEECCCCCceee
Confidence 344555554 2 458888887654222 122111111 2222 2 678888888653 58899988754 3
Q ss_pred EEeecccccCeeEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE
Q 001248 895 KSKLKGHSKRITGLAFSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 969 (1114)
Q Consensus 895 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~ 969 (1114)
+..+......-..+.+ ++++++.|+.++ .+.+||+.+.+= ..+...... ..-..++. -+++.++.
T Consensus 92 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W---~~~~~~p~~----r~~~~~~~-~~~~iyv~ 161 (302)
T 2xn4_A 92 VANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEW---FHVAPMNTR----RSSVGVGV-VGGLLYAV 161 (302)
T ss_dssp ECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEE---EEECCCSSC----CBSCEEEE-ETTEEEEE
T ss_pred CCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeE---eecCCCCCc----ccCceEEE-ECCEEEEE
Confidence 3222222222222233 677888887664 477888876432 222111111 11122222 35666665
Q ss_pred E-e-------CCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcC-----CeEEEEEcCCCeeeEEeCCC
Q 001248 970 V-H-------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRINPS 1036 (1114)
Q Consensus 970 ~-~-------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D-----g~I~vwd~~~~~~~~~~~~~ 1036 (1114)
+ . ...+.+||..+.+-...-........-..+. -++++++.|+.+ ..+.+||..+.+-...-.
T Consensus 162 GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~-- 237 (302)
T 2xn4_A 162 GGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVAD-- 237 (302)
T ss_dssp CCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECC--
T ss_pred eCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCC--
Confidence 3 2 2358899998775433211111111112222 267777777765 369999998876543221
Q ss_pred cccCCCCCCCCccceEEEecCCCCCeEEEEeCCC-----cEEEEeccCCCCcccC
Q 001248 1037 AYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG-----GVHVFEPLESEGKWGV 1086 (1114)
Q Consensus 1037 ~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg-----~v~vW~i~~~~~~~~~ 1086 (1114)
++...... .++.. ++.+++.|+.++ .+.+||+.+.+ |..
T Consensus 238 --~~~~r~~~-----~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~ 281 (302)
T 2xn4_A 238 --MNMCRRNA-----GVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDK--WTV 281 (302)
T ss_dssp --CSSCCBSC-----EEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE--EEE
T ss_pred --CCCccccC-----eEEEE--CCEEEEECCcCCCcccccEEEEcCCCCe--EEE
Confidence 22221111 22222 467888888664 48889988765 554
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.21 Score=52.87 Aligned_cols=189 Identities=9% Similarity=0.043 Sum_probs=100.2
Q ss_pred eeCCCEEEEEe-C-----CeEEEEEcCCCc---c--ccccCCCCCCeEEEEEecCCCcEEEEEeCCC-----cEEEEEcc
Q 001248 827 SKNDSYVMSAS-G-----GKISLFNMMTFK---T--MATFMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVR 890 (1114)
Q Consensus 827 s~d~~~l~~~~-d-----g~i~iwd~~~~~---~--~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg-----~v~iwd~~ 890 (1114)
..+++.++.|+ + +.+.+||..+.+ - +..+........++. . ++++++.|+.++ .+.+||+.
T Consensus 60 ~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~--~-~~~lyv~GG~~~~~~~~~~~~~d~~ 136 (301)
T 2vpj_A 60 SLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT--L-GDMIYVSGGFDGSRRHTSMERYDPN 136 (301)
T ss_dssp EETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE--E-TTEEEEECCBCSSCBCCEEEEEETT
T ss_pred EECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE--E-CCEEEEEcccCCCcccceEEEEcCC
Confidence 34677777776 3 458999988755 2 222222112222222 2 678888887543 68899987
Q ss_pred cce--EEEeecccccCeeEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccC
Q 001248 891 VDE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 963 (1114)
Q Consensus 891 ~~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspd 963 (1114)
+.+ .+..+......-.++.+ ++++++.|+.+ ..+.+||+.+.+= ..+...... ..-..++ .-+
T Consensus 137 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W---~~~~~~p~~----r~~~~~~-~~~ 206 (301)
T 2vpj_A 137 IDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHW---TNVTPMATK----RSGAGVA-LLN 206 (301)
T ss_dssp TTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEE---EEECCCSSC----CBSCEEE-EET
T ss_pred CCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcE---EeCCCCCcc----cccceEE-EEC
Confidence 753 33333222222222222 67788887765 4588999877432 222111110 1111222 235
Q ss_pred CcEEEEE-eC-----CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcC-----CeEEEEEcCCCeee
Q 001248 964 QIHFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLR 1030 (1114)
Q Consensus 964 g~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D-----g~I~vwd~~~~~~~ 1030 (1114)
++.++.+ .+ ..+.+||+.+.+-...-...........+. -++++++.|+.+ ..|.+||..+.+-.
T Consensus 207 ~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 282 (301)
T 2vpj_A 207 DHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIIDSWE 282 (301)
T ss_dssp TEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred CEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence 6666664 32 468999998776443322111111112222 267777777765 35888898876643
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.25 Score=52.60 Aligned_cols=228 Identities=12% Similarity=0.075 Sum_probs=117.8
Q ss_pred eCCCEEEEEe-C----CeEEEEEcCCCcccc--ccCCCCCCeEEEEEecCCCcEEEEEeC----C-----CcEEEEEccc
Q 001248 828 KNDSYVMSAS-G----GKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMD----D-----SSIQIYNVRV 891 (1114)
Q Consensus 828 ~d~~~l~~~~-d----g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~la~g~~----d-----g~v~iwd~~~ 891 (1114)
-++..++.|+ + ..+.+||..+.+-.. .+....... +++. - ++.+++.|+. + ..+.+||..+
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~ 99 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCV-V-GGLLYAVGGRNNSPDGNTDSSALDCYNPMT 99 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-E-TTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEE-E-CCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence 4566666665 2 468899987654322 122111112 2222 2 6778888876 2 3688999877
Q ss_pred ce--EEEeecccccCeeEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCC
Q 001248 892 DE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ 964 (1114)
Q Consensus 892 ~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg 964 (1114)
.+ .+..+......-..+.+ ++++++.|+.+ ..+.+||..+.+= ..+....... .-..++.. ++
T Consensus 100 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W---~~~~~~p~~r----~~~~~~~~-~~ 169 (308)
T 1zgk_A 100 NQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEW---HLVAPMLTRR----IGVGVAVL-NR 169 (308)
T ss_dssp TEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEE---EECCCCSSCC----BSCEEEEE-TT
T ss_pred CeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeE---eECCCCCccc----cceEEEEE-CC
Confidence 54 22222221222222333 67777777654 3588899877432 2121111110 11122222 56
Q ss_pred cEEEEE-eC-----CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcC-----CeEEEEEcCCCeeeEEe
Q 001248 965 IHFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRI 1033 (1114)
Q Consensus 965 ~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D-----g~I~vwd~~~~~~~~~~ 1033 (1114)
++++.+ .+ ..+.+||+.+.+-...-........-..+.+ ++++++.|+.+ ..+.+||+.+.+-...
T Consensus 170 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~- 246 (308)
T 1zgk_A 170 LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFV- 246 (308)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEC-
T ss_pred EEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEEC-
Confidence 666663 32 4688999887654332111111111122222 67777777665 4699999988765432
Q ss_pred CCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCC-----CcEEEEeccCCC
Q 001248 1034 NPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----GGVHVFEPLESE 1081 (1114)
Q Consensus 1034 ~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~D-----g~v~vW~i~~~~ 1081 (1114)
. .++..... . +++.. ++.+++.|+.+ ..+.++|+.+.+
T Consensus 247 ~---~~p~~r~~---~--~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 247 A---PMKHRRSA---L--GITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp C---CCSSCCBS---C--EEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred C---CCCCCccc---e--EEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 1 12222111 1 22222 46788888755 457788887755
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.36 Score=51.83 Aligned_cols=188 Identities=14% Similarity=0.084 Sum_probs=105.3
Q ss_pred eEEEEEecCCCcEEEEE------------eCCCcEEEEEccc--ceEE-Eeecc-----cccCeeEEEEcC--CCC-EEE
Q 001248 862 ATFLAFHPQDNNIIAIG------------MDDSSIQIYNVRV--DEVK-SKLKG-----HSKRITGLAFSH--ALN-VLV 918 (1114)
Q Consensus 862 i~~l~~sp~d~~~la~g------------~~dg~v~iwd~~~--~~~~-~~l~~-----h~~~V~~l~~s~--d~~-~l~ 918 (1114)
...++..| +|..+++. ..+|.|.++|..+ ++.. ..+.+ ..-....+.+.+ ++. +|+
T Consensus 52 ~EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 52 SEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCEEEECT-TSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred cceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 44556666 66444443 2689999999873 2211 12222 233566777755 454 344
Q ss_pred EE-eC--CCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEe----C--------------CeEEE
Q 001248 919 SS-GA--DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH----E--------------TQLAI 977 (1114)
Q Consensus 919 s~-s~--D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~----d--------------~~i~i 977 (1114)
.+ .. +.+|.+|+++..... ...+....+.. ......+++.++|.+.++.. | +.|.-
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~-~~~~~~~~g~~--~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr 207 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKS-LLHLKTIRHKL--LPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTE-EEEEEEECCTT--CSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred EEECCCCCCeEEEEEEECCCCE-EEEEeccccCC--CCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence 33 33 567888888764322 22333333322 24678999999999888742 1 33444
Q ss_pred EEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEE-cCCeEEEEEcC-CCeeeE--EeCCCcccCCCCCCCCccceEE
Q 001248 978 FETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAA-NLKLRC--RINPSAYLPAGVSSSNVHPLVI 1053 (1114)
Q Consensus 978 wd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s-~Dg~I~vwd~~-~~~~~~--~~~~~~~~~~~~~~~~v~~~~~ 1053 (1114)
+|. ++.. ... ..-...+.++||||+++|+.+. ..+.|+.|++. ++++.. .+. .... |=.+
T Consensus 208 ~d~--~~~~-~~~--~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~----------PDGi 271 (355)
T 3sre_A 208 YSP--NDVR-VVA--EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTL----------VDNI 271 (355)
T ss_dssp ECT--TCCE-EEE--EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSE----------EEEE
T ss_pred EEC--CeEE-Eee--cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCC----------CceE
Confidence 444 3322 211 1134578999999999887665 46789999986 343321 221 1112 2246
Q ss_pred EecCCCCCeEEEEeCC
Q 001248 1054 AAHPQEPNEFALGLSD 1069 (1114)
Q Consensus 1054 ~~~~~d~~~l~s~~~D 1069 (1114)
+.++++|++.+++..+
T Consensus 272 ~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 272 SVDPVTGDLWVGCHPN 287 (355)
T ss_dssp EECTTTCCEEEEEESC
T ss_pred EEeCCCCcEEEEecCC
Confidence 6766337777766544
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.57 Score=52.71 Aligned_cols=103 Identities=15% Similarity=0.113 Sum_probs=62.4
Q ss_pred CccEEEEeeCCCEEEEEeC-CeEEEEEcCCCccc--cccCC------CCCCeEEEEEecC---CCcEEEEEeC-------
Q 001248 820 AVPCFALSKNDSYVMSASG-GKISLFNMMTFKTM--ATFMP------PPPAATFLAFHPQ---DNNIIAIGMD------- 880 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~~~~d-g~i~iwd~~~~~~~--~~~~~------~~~~i~~l~~sp~---d~~~la~g~~------- 880 (1114)
....++|.|||+++++-.. +.|++++..++... ..+.. .......|+|+|+ ++.+.++-+.
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 4679999999998887765 57998886554432 22221 2456789999994 4444444332
Q ss_pred -----CCcEEEEEcccc-------eEEE-eecc-cccCeeEEEEcCCCCEEEEEeC
Q 001248 881 -----DSSIQIYNVRVD-------EVKS-KLKG-HSKRITGLAFSHALNVLVSSGA 922 (1114)
Q Consensus 881 -----dg~v~iwd~~~~-------~~~~-~l~~-h~~~V~~l~~s~d~~~l~s~s~ 922 (1114)
...|.-|++..+ +.+. .+.. .......|+|.|||.+.++.+.
T Consensus 108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235666665421 1121 1221 1123578999999998887654
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.54 Score=50.09 Aligned_cols=223 Identities=11% Similarity=0.089 Sum_probs=114.3
Q ss_pred CCeEEEEEcCCCcccc-ccCCCCCCeEEEEEecCCCcEEEEEeC-----C------CcEEEEEcccce--EEEeeccccc
Q 001248 838 GGKISLFNMMTFKTMA-TFMPPPPAATFLAFHPQDNNIIAIGMD-----D------SSIQIYNVRVDE--VKSKLKGHSK 903 (1114)
Q Consensus 838 dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~sp~d~~~la~g~~-----d------g~v~iwd~~~~~--~~~~l~~h~~ 903 (1114)
...+.+||..+.+-.. .+..........+... ++.+++.|+. . ..+.+||..+++ .+..+.....
T Consensus 12 G~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 90 (315)
T 4asc_A 12 EEGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRC 90 (315)
T ss_dssp TTEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEE
T ss_pred CCceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchh
Confidence 3678999988765432 1222222333333344 7788888873 1 127888887754 2222221111
Q ss_pred CeeEEEEcCCCCEEEEEeCC--------CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-e-C-
Q 001248 904 RITGLAFSHALNVLVSSGAD--------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H-E- 972 (1114)
Q Consensus 904 ~V~~l~~s~d~~~l~s~s~D--------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~-d- 972 (1114)
.-..+.+ ++++++.|+.+ ..+.+||..+.+ +..+...... ..-.+++ .-+++.++.+ . +
T Consensus 91 ~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~---W~~~~~~p~~----r~~~~~~-~~~~~iyv~GG~~~~ 160 (315)
T 4asc_A 91 LFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFK---WGESDPLPYV----VYGHTVL-SHMDLVYVIGGKGSD 160 (315)
T ss_dssp SCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTE---EEECCCCSSC----CBSCEEE-EETTEEEEECCBCTT
T ss_pred ceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCc---EeECCCCCCc----ccceeEE-EECCEEEEEeCCCCC
Confidence 1122222 56777777743 458899988743 2222111111 0112222 3456666664 3 2
Q ss_pred ----CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCC-----eEEEEEcCCCeeeEEeCCCcccCCCC
Q 001248 973 ----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-----TVCVFSAANLKLRCRINPSAYLPAGV 1043 (1114)
Q Consensus 973 ----~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg-----~I~vwd~~~~~~~~~~~~~~~~~~~~ 1043 (1114)
..+.+||..+.+-...-.... ...-.+++ .-++++++.|+.++ .+.+||..+.+-...-. ++...
T Consensus 161 ~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~r 234 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFEWKELAPMQT-ARSLFGAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA----FPQER 234 (315)
T ss_dssp SCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEE-EETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC----CSSCC
T ss_pred CcccceEEEEeCCCCeEEECCCCCC-chhceEEE-EECCEEEEEeccCCCCccceEEEEECCCCeEEECCC----CCCcc
Confidence 368999988775433221111 11111222 22677777777654 58899998876543321 22221
Q ss_pred CCCCccceEEEecCCCCCeEEEEeCCC--------------cEEEEeccCCCCcccC
Q 001248 1044 SSSNVHPLVIAAHPQEPNEFALGLSDG--------------GVHVFEPLESEGKWGV 1086 (1114)
Q Consensus 1044 ~~~~v~~~~~~~~~~d~~~l~s~~~Dg--------------~v~vW~i~~~~~~~~~ 1086 (1114)
..+ +++.. ++.+++.|+.++ .+.++|+.+.+ |..
T Consensus 235 ~~~-----~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~--W~~ 282 (315)
T 4asc_A 235 SSL-----SLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK--WEG 282 (315)
T ss_dssp BSC-----EEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE--EEE
T ss_pred cce-----eEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCCh--hhh
Confidence 111 22222 467888887642 36677777755 544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.17 Score=63.02 Aligned_cols=237 Identities=14% Similarity=0.137 Sum_probs=143.2
Q ss_pred ccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc-ceEEEeec
Q 001248 821 VPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKSKLK 899 (1114)
Q Consensus 821 v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~-~~~~~~l~ 899 (1114)
..+..++|..+.+|.-...++.|||+.+...+....-. ..|.-=.|-. .+.|+..+ +..|+-|++.. ..+...+.
T Consensus 68 AdsAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~~-e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P~k~fd 143 (1630)
T 1xi4_A 68 ADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFD 143 (1630)
T ss_pred chhhccCCCcceEEEecCCeEEEeehHHhhhhcccccC-CCceEEEecC--CCeeEEEc-CCeEEEeccCCCCccHHHHh
Confidence 34566788888888877889999999988777766533 3566666653 45666555 56899999964 23444444
Q ss_pred cc----ccCeeEEEEcCCCCEEEEEe-------CCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEE--cc-CCc
Q 001248 900 GH----SKRITGLAFSHALNVLVSSG-------ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF--HQ-DQI 965 (1114)
Q Consensus 900 ~h----~~~V~~l~~s~d~~~l~s~s-------~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~f--sp-dg~ 965 (1114)
-| ...|..-..+++.+|++..| -.|.+.+|.++.+.. +...||.... ..+.+ .+ ...
T Consensus 144 R~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s------Q~iegha~~F---~~~~~~~~~~~~~ 214 (1630)
T 1xi4_A 144 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS------QPIEGHAASF---AQFKMEGNAEEST 214 (1630)
T ss_pred cchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc------hhhhHhHhhh---heeccCCCCCCce
Confidence 44 35677778889999987544 247889999887432 3333432100 00000 11 122
Q ss_pred EEEEEe----CCeEEEEEcCCC---c------eeeeee-cCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeE
Q 001248 966 HFLVVH----ETQLAIFETTKL---E------CVKQWV-PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRC 1031 (1114)
Q Consensus 966 ~l~~~~----d~~i~iwd~~~~---~------~~~~~~-~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~ 1031 (1114)
.++.+. .+++.|-++... . .+..+. .+.-.+-..++..|+.-..+...+.-|.|.+||+.||..+.
T Consensus 215 l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~ 294 (1630)
T 1xi4_A 215 LFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 294 (1630)
T ss_pred EEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhh
Confidence 222221 257778777432 1 111111 12224456678888888889889999999999999999987
Q ss_pred EeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1032 RINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1032 ~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
+-+.+ ...+. ..+.....+. ++.....|.|.--.+.+..
T Consensus 295 ~~ris--------~~~iF--~~~~~~~~~g-~~~vnr~G~vl~v~v~~~~ 333 (1630)
T 1xi4_A 295 MNRIS--------GETIF--VTAPHEATAG-IIGVNRKGQVLSVCVEEEN 333 (1630)
T ss_pred hcccc--------CCceE--EeccCCCCCc-eEEEcCCceEEEEEEccch
Confidence 65411 11133 2222222233 4444477877777776655
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.25 E-value=1.6 Score=46.68 Aligned_cols=201 Identities=12% Similarity=0.086 Sum_probs=109.0
Q ss_pred CCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccc--ccc----CCCCCCeEEEEEecC---CCcEEEEE--eCCCcEEE
Q 001248 819 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM--ATF----MPPPPAATFLAFHPQ---DNNIIAIG--MDDSSIQI 886 (1114)
Q Consensus 819 ~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~--~~~----~~~~~~i~~l~~sp~---d~~~la~g--~~dg~v~i 886 (1114)
.....++|.|||+++++-. .|.|++++..+++.. ..+ .........++|+|+ ++.+.++- ..++.|.-
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R 111 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR 111 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence 4567999999999888887 899999987655431 111 223456889999993 35444432 24456666
Q ss_pred EEcccc----------eEE-Eeec---ccccCeeEEEEcCCCCEEEEEeC-------------CCcEEEEeCCCCccccc
Q 001248 887 YNVRVD----------EVK-SKLK---GHSKRITGLAFSHALNVLVSSGA-------------DSQLCVWSSDGWEKQKN 939 (1114)
Q Consensus 887 wd~~~~----------~~~-~~l~---~h~~~V~~l~~s~d~~~l~s~s~-------------D~~v~iwd~~~~~~~~~ 939 (1114)
|.+..+ +.+ ..+. .|. -..|+|.|||.+.++.+. .|.|.-.+.+..-....
T Consensus 112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~--g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n 189 (347)
T 3das_A 112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIHN--GGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN 189 (347)
T ss_dssp EEBCTTSCTTCCBCCCEEEEEEECCCSSCC--CCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred EEeCCCCcccccCCCcEEEEEcCCCCCCcc--CccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence 665431 111 1222 243 357999999988887653 24444444443100000
Q ss_pred ---cccccCCCCCCCCCCceEEEEccCCcEEEE--EeCCeEEEEEcCCCcee------------------eeeecCCCCc
Q 001248 940 ---RFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHETQLAIFETTKLECV------------------KQWVPRESSA 996 (1114)
Q Consensus 940 ---~~~~~~~~~~~~~~~i~~v~fspdg~~l~~--~~d~~i~iwd~~~~~~~------------------~~~~~~~h~~ 996 (1114)
.......++. ....++|.|+|.+.++ +.++.-.|--+..+.-. ..|. .+..
T Consensus 190 Pf~~~~i~a~G~R----Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~--~~~~ 263 (347)
T 3das_A 190 PFPGSPVYSYGHR----NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWS--TDEA 263 (347)
T ss_dssp SSTTCCEEEBCCS----BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEEC--TTTC
T ss_pred CCCCCeEEeeCCC----CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecC--CCCC
Confidence 0000111221 4578999999988777 34443333333333211 1111 1113
Q ss_pred CeeEEEECCCCCEEEEEEcCCeEEEEEcCCCe
Q 001248 997 PITHATFSCDSQLVYACFLDATVCVFSAANLK 1028 (1114)
Q Consensus 997 ~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~ 1028 (1114)
....++|. +|.+++..-..+.|....+....
T Consensus 264 ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~ 294 (347)
T 3das_A 264 SPSGIAYA-EGSVWMAGLRGERLWRIPLKGTA 294 (347)
T ss_dssp CEEEEEEE-TTEEEEEESTTCSEEEEEEETTE
T ss_pred CCcceEEE-cCceeeccccCCEEEEEEecCCc
Confidence 55667775 45555544445556655665443
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.17 E-value=1.9 Score=46.63 Aligned_cols=114 Identities=12% Similarity=0.163 Sum_probs=60.7
Q ss_pred CCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCC---CCe
Q 001248 358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---GSL 434 (1114)
Q Consensus 358 ~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~~ 434 (1114)
-...+.|+|.|||++|++ +...|.|++++.. +.... .+ -+ .. .+..........|+|+|| +.+
T Consensus 17 l~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g~~~~--~~--~~-------~~-~v~~~g~~g~~gia~~pdf~~~g~ 82 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLI-TLRGGELRHWQAG-KGLSA--PL--SG-------VP-DVWAHGQGGLLDVVLAPDFAQSRR 82 (353)
T ss_dssp ESSEEEEEECSTTCCEEE-EETTTEEEEEETT-TEECC--CC--BS-------CC-CCCCSTTCSEEEEEECTTHHHHCE
T ss_pred CCCcEEEEEcCCCCEEEE-EeCCceEEEEeCC-Cceee--Ee--cC-------Cc-ccccCCCCCceeEEECCCCCCCCE
Confidence 345799999999995344 4567999999854 32110 00 00 00 012223446789999996 444
Q ss_pred EEEE-eC-------CCeEEEEEccCCc----eeeeeE-eec---cccCCeeEEEecCCCCeeEEEEec
Q 001248 435 FGVA-YS-------RHIVQIYSYHGGD----EVRQHL-EID---AHVGGVNDIAFSHPNKQLCVITCG 486 (1114)
Q Consensus 435 las~-~~-------dg~i~iwd~~~~~----~~~~~~-~l~---~h~~~V~~v~~s~d~~~~~l~s~~ 486 (1114)
|..+ .. ...|..|++..+. ..+.+. .+. .....-..|+|.|||. +++.+|.
T Consensus 83 lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd 149 (353)
T 2g8s_A 83 IWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGE 149 (353)
T ss_dssp EEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECC
T ss_pred EEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECC
Confidence 4444 22 2356667765431 111111 111 1111235799999995 3454443
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.33 Score=51.52 Aligned_cols=188 Identities=10% Similarity=0.040 Sum_probs=100.2
Q ss_pred eCCCEEEEEe-C----CeEEEEEcCCCcccc--ccCCCCCCeEEEEEecCCCcEEEEEeCC------CcEEEEEcccce-
Q 001248 828 KNDSYVMSAS-G----GKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDD------SSIQIYNVRVDE- 893 (1114)
Q Consensus 828 ~d~~~l~~~~-d----g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~la~g~~d------g~v~iwd~~~~~- 893 (1114)
-+++.++.|+ + ..+.+||..+.+-.. .+........++.+ ++++++.|+.+ ..+.+||..+.+
T Consensus 54 ~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W 130 (306)
T 3ii7_A 54 WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA---EGKIYTSGGSEVGNSALYLFECYDTRTESW 130 (306)
T ss_dssp ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE---TTEEEEECCBBTTBSCCCCEEEEETTTTEE
T ss_pred ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE---CCEEEEECCCCCCCcEeeeEEEEeCCCCce
Confidence 4777777776 3 568899988754322 22211122222222 67788888865 468999988754
Q ss_pred -EEEeecccccCeeEEEEcCCCCEEEEEeC---------CCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccC
Q 001248 894 -VKSKLKGHSKRITGLAFSHALNVLVSSGA---------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 963 (1114)
Q Consensus 894 -~~~~l~~h~~~V~~l~~s~d~~~l~s~s~---------D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspd 963 (1114)
.+..+......-.++.+ ++++++.|+. -..+.+||+.+.+ +..+...... ..-..++. -+
T Consensus 131 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~---W~~~~~~p~~----r~~~~~~~-~~ 200 (306)
T 3ii7_A 131 HTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATET---WTELCPMIEA----RKNHGLVF-VK 200 (306)
T ss_dssp EEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTE---EEEECCCSSC----CBSCEEEE-ET
T ss_pred EeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCe---EEECCCccch----hhcceEEE-EC
Confidence 22222211111122222 6677777764 3458899988753 2222211110 01122222 26
Q ss_pred CcEEEEE-eC-----CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcC-----CeEEEEEcCCCeee
Q 001248 964 QIHFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLR 1030 (1114)
Q Consensus 964 g~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D-----g~I~vwd~~~~~~~ 1030 (1114)
+++++.+ .+ ..+.+||..+.+-...-...........+.+ ++++++.|+.+ ..+.+||..+.+-.
T Consensus 201 ~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 201 DKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWV 276 (306)
T ss_dssp TEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred CEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence 6666663 22 4688999987754332111111112222333 67777888754 46899999887644
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.012 Score=62.66 Aligned_cols=200 Identities=7% Similarity=0.026 Sum_probs=109.1
Q ss_pred CcEEEEEeCCCcEEEEEcccceEEEeeccc-ccCeeEEE---EcCCCCEEEEE-eCCCcEEEEeCCCCccccccccccCC
Q 001248 872 NNIIAIGMDDSSIQIYNVRVDEVKSKLKGH-SKRITGLA---FSHALNVLVSS-GADSQLCVWSSDGWEKQKNRFLQIPT 946 (1114)
Q Consensus 872 ~~~la~g~~dg~v~iwd~~~~~~~~~l~~h-~~~V~~l~---~s~d~~~l~s~-s~D~~v~iwd~~~~~~~~~~~~~~~~ 946 (1114)
+.++++++.||.|+-+|..+|+.+.++... ..++.... ...++..++.. +.||.|..++..++.......+....
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 347888999999999999999999888654 12222111 00122333333 57999998888776432111111000
Q ss_pred CCCCCCCCceEEEE------------ccCCcEEEEEeCCeEEEEEcCCCceeeeeecCCCCcC-----eeEEEEC-----
Q 001248 947 GRTPTAQSDTRVQF------------HQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAP-----ITHATFS----- 1004 (1114)
Q Consensus 947 ~~~~~~~~i~~v~f------------spdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~-----v~~l~~s----- 1004 (1114)
.. .-+.. +.+|..++.+.++.+...|..+|+.+..+....-... ..|....
T Consensus 90 ~~-------SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d 162 (339)
T 2be1_A 90 ST-------SPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQ 162 (339)
T ss_dssp TT-------CSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC------------------
T ss_pred ec-------cccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccc
Confidence 00 01111 2455545558999999999999999988864321111 1111111
Q ss_pred CCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCCCcc
Q 001248 1005 CDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKW 1084 (1114)
Q Consensus 1005 ~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~~~~ 1084 (1114)
..+..|+.+..+..+.+.+ .+|+ +..+....+.+... ...+. ..-..+. |+.+ +.++.||.|...|..+|+..|
T Consensus 163 ~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~-~~~~~-~~~~~s~-Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 163 ECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVL-DVPLA-LQNTFSK-DGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp --CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTT-THHHH-TTCSSCS-SSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred cCCCeEEEecceEEEEEEC-CCCC-eEEEeccccccccc-ccccc-ccccccc-CCcE-EEECCCCEEEEEECCCCcEEE
Confidence 1245777788788888777 5564 32222111111110 00000 0000111 4555 557889999999999999888
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.023 Score=55.30 Aligned_cols=150 Identities=12% Similarity=0.035 Sum_probs=86.9
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEEcccceE------EEee--cccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001248 861 AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV------KSKL--KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 932 (1114)
Q Consensus 861 ~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~------~~~l--~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~ 932 (1114)
.++.++|+| ++.+.|+ .+|.++-.+..+... -..+ .+-.. -.++.|.++|.+.++ .||.|.-++-.
T Consensus 42 ~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 42 NFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred cceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 577999999 8988777 678877777644211 0111 01111 378999999998888 56988777754
Q ss_pred CCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCCcee-----eeeecCCCCcCeeEEEECCCC
Q 001248 933 GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECV-----KQWVPRESSAPITHATFSCDS 1007 (1114)
Q Consensus 933 ~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~-----~~~~~~~h~~~v~~l~~s~dg 1007 (1114)
+.....+......-+ ...-..+..+.|.|+|.+.++. |+.+.-....+.... ..............+.|+++|
T Consensus 116 ~~~~~~Wl~~a~~vg-~~gw~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G 193 (236)
T 1tl2_A 116 QSDTDNWIARATEVG-SGGWSGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG 193 (236)
T ss_dssp CSTTCCHHHHSEEEE-CSSGGGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS
T ss_pred cCCCCceeccccEec-cCCCCceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC
Confidence 433222211100000 0001256899999999999999 888654444322211 111111223344557788888
Q ss_pred CEEEEEEcCCeEE
Q 001248 1008 QLVYACFLDATVC 1020 (1114)
Q Consensus 1008 ~~l~s~s~Dg~I~ 1020 (1114)
.+.++. +|.++
T Consensus 194 ~l~~v~--~g~~Y 204 (236)
T 1tl2_A 194 TLFGVQ--GGKFY 204 (236)
T ss_dssp CEEEEE--TTEEE
T ss_pred cEEEEe--CCeEE
Confidence 876655 66443
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.67 Score=50.43 Aligned_cols=94 Identities=18% Similarity=0.231 Sum_probs=50.3
Q ss_pred eeCCCEEEEEe--CCeEEEEEcCC--C--ccccccCCCCCCeEEEEEecCCCcEEEEEeC-C---------CcEEEEEcc
Q 001248 827 SKNDSYVMSAS--GGKISLFNMMT--F--KTMATFMPPPPAATFLAFHPQDNNIIAIGMD-D---------SSIQIYNVR 890 (1114)
Q Consensus 827 s~d~~~l~~~~--dg~i~iwd~~~--~--~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~-d---------g~v~iwd~~ 890 (1114)
.-+++.++.|+ ...+.+||..+ . ..+..+......-.+++.. ++++++.|+. + ..+.+||..
T Consensus 17 ~~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~ 94 (357)
T 2uvk_A 17 IDNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPK 94 (357)
T ss_dssp EETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETT
T ss_pred EECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCC
Confidence 33777777776 46799999863 2 2222222111111222222 6778888876 2 468999988
Q ss_pred cce--EEEeecccccCeeEEEEcCCCCEEEEEeCC
Q 001248 891 VDE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD 923 (1114)
Q Consensus 891 ~~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D 923 (1114)
+.+ .+..+. ........+...++++++.|+.+
T Consensus 95 ~~~W~~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 95 TNSWVKLMSHA-PMGMAGHVTFVHNGKAYVTGGVN 128 (357)
T ss_dssp TTEEEECSCCC-SSCCSSEEEEEETTEEEEEECCC
T ss_pred CCcEEECCCCC-CcccccceEEEECCEEEEEeCcC
Confidence 754 222222 01111121222577888888865
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.12 Score=50.32 Aligned_cols=148 Identities=12% Similarity=0.004 Sum_probs=85.3
Q ss_pred CccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCCCCCe--------EEEEEecCCCcEEEEEeCCCcEEEEEccc
Q 001248 820 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAA--------TFLAFHPQDNNIIAIGMDDSSIQIYNVRV 891 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i--------~~l~~sp~d~~~la~g~~dg~v~iwd~~~ 891 (1114)
.+..++|+|||.+.++ .+|.+.-.+..+.....-+. ....| .++.|.| +|.+.++ .||.|+-++-.+
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~-s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMG-RAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHH-HCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCCCCcccccc-cccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCCc
Confidence 5679999999998888 88887777664432221111 12223 7899999 8888887 569998887643
Q ss_pred ceEE------Eee-cccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCC
Q 001248 892 DEVK------SKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ 964 (1114)
Q Consensus 892 ~~~~------~~l-~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg 964 (1114)
...- .++ .+-=..+..|.|.|+|.+.+.. |+.+.-+...+............-+.. ....-..+.|.++|
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~-g~~~yr~l~f~~~G 193 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQG-GWDTFKFLFFSSVG 193 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESS-SGGGEEEEEECTTS
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccC-CcceEEEEEECCCC
Confidence 1110 011 1111457899999999888777 776543332221111110000000000 00123556799999
Q ss_pred cEEEEEeCCeEE
Q 001248 965 IHFLVVHETQLA 976 (1114)
Q Consensus 965 ~~l~~~~d~~i~ 976 (1114)
.+.++. ++.+.
T Consensus 194 ~l~~v~-~g~~Y 204 (236)
T 1tl2_A 194 TLFGVQ-GGKFY 204 (236)
T ss_dssp CEEEEE-TTEEE
T ss_pred cEEEEe-CCeEE
Confidence 988887 66444
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.69 Score=48.84 Aligned_cols=188 Identities=12% Similarity=0.102 Sum_probs=98.3
Q ss_pred eCCCEEEEEe-C-----CeEEEEEcCCCccc--cccCCCCCCeEEEEEecCCCcEEEEEeCCC-----cEEEEEcccce-
Q 001248 828 KNDSYVMSAS-G-----GKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVDE- 893 (1114)
Q Consensus 828 ~d~~~l~~~~-d-----g~i~iwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~la~g~~dg-----~v~iwd~~~~~- 893 (1114)
-+++.++.|+ + ..+.+||..+.+-. ..+........++.+ ++++++.|+.++ .+.+||+.+.+
T Consensus 60 ~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~d~~~~~W 136 (302)
T 2xn4_A 60 MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL---NGLLYAVGGFDGSTGLSSVEAYNIKSNEW 136 (302)
T ss_dssp ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEEEEECSSCEEEEEEEEETTTTEE
T ss_pred ECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE---CCEEEEEcCCCCCccCceEEEEeCCCCeE
Confidence 3777777776 3 35889998765432 222211122222222 677888887654 57888887654
Q ss_pred -EEEeecccccCeeEEEEcCCCCEEEEEeCC-------CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCc
Q 001248 894 -VKSKLKGHSKRITGLAFSHALNVLVSSGAD-------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI 965 (1114)
Q Consensus 894 -~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D-------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~ 965 (1114)
.+..+......-.++.+ ++++++.|+.+ ..+.+||+.+.+= ..+...... ..-.+++ .-+++
T Consensus 137 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W---~~~~~~p~~----r~~~~~~-~~~~~ 206 (302)
T 2xn4_A 137 FHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEW---TYIAEMSTR----RSGAGVG-VLNNL 206 (302)
T ss_dssp EEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEE---EEECCCSSC----CBSCEEE-EETTE
T ss_pred eecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcE---EECCCCccc----cccccEE-EECCE
Confidence 33222222222222222 66777777653 3588999887432 222111111 0112222 23566
Q ss_pred EEEEE-eC-----CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCC-----eEEEEEcCCCeee
Q 001248 966 HFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-----TVCVFSAANLKLR 1030 (1114)
Q Consensus 966 ~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg-----~I~vwd~~~~~~~ 1030 (1114)
+++.+ .+ ..+.+||..+.+-...-.... ...-.+++ .-++++++.|+.++ .|.+||..+.+-.
T Consensus 207 iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~-~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 280 (302)
T 2xn4_A 207 LYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNM-CRRNAGVC-AVNGLLYVVGGDDGSCNLASVEYYNPTTDKWT 280 (302)
T ss_dssp EEEECCBSSSSBCCCEEEEETTTTEEEEECCCSS-CCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred EEEECCCCCCcccceEEEEeCCCCCEeeCCCCCC-ccccCeEE-EECCEEEEECCcCCCcccccEEEEcCCCCeEE
Confidence 66664 32 468999998775433221111 11111122 23677777777654 4899999887644
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=95.75 E-value=0.13 Score=55.64 Aligned_cols=126 Identities=17% Similarity=0.192 Sum_probs=79.3
Q ss_pred CCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEE-------eeeeeeccCCCCcccccccccCCCCCeeEEEEcC-
Q 001248 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL-------RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP- 430 (1114)
Q Consensus 359 ~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~-------~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp- 430 (1114)
+.|..+..||+|++ ||.- .+.+|.|-.+..+..... ...+.|.++. .......+|..+.|+|
T Consensus 66 ~~i~qlvlSpsG~l-LAl~-g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~--------~~~~~~s~I~qVlWHPl 135 (452)
T 3pbp_A 66 DDTFHVISSTSGDL-LCLF-NDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE--------EEVGPKSSIKKVLFHPK 135 (452)
T ss_dssp CTTCEEEECTTSSE-EEEE-CSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG--------CC--CCCCEEEEEECTT
T ss_pred CceeEEEECCCCCE-EEEe-cCCeEEEEEecCccccCcccccccccceeEEEcCC--------cccCCCCceeEEEeccc
Confidence 36889999999996 5554 356899988874432111 0011122211 0112357899999999
Q ss_pred --CCCeEEEEeCCCeEEEEEccCCceeee-------eEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE
Q 001248 431 --DGSLFGVAYSRHIVQIYSYHGGDEVRQ-------HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1114)
Q Consensus 431 --dg~~las~~~dg~i~iwd~~~~~~~~~-------~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw 494 (1114)
.|..|++-..|+.|++||+........ ...+..+...|.+++|..++-.+++++....|.|+-.
T Consensus 136 ~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 136 SYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp BGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred cCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 566899999999999999986331111 0112223356888899887776666666666766543
|
| >1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1 | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0097 Score=47.43 Aligned_cols=55 Identities=16% Similarity=0.257 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCcc--HHHHHHHhhccCHHHHHHHhcc
Q 001248 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN--MKYFEDEVHNGNWDDVEKYLSG 59 (1114)
Q Consensus 5 ~~~v~~li~q~L~~~g~~~s~~~l~~Esg~~~~--~~~~~~~i~~g~w~~~~~~~~~ 59 (1114)
++|+.+=|++||..+||.+++.+|.+|.++..+ ...-.+-+++-+|..++++-++
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQKK 66 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKK 66 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHHH
Confidence 568999999999999999999999999998875 1223456677777766555443
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.75 Score=49.37 Aligned_cols=189 Identities=12% Similarity=0.051 Sum_probs=93.5
Q ss_pred CeeEEEEcCCCCeEEEEe------------CCCeEEEEEccCCceeeeeEeecc-----ccCCeeEEEecC--CCCeeEE
Q 001248 422 SVNRVIWSPDGSLFGVAY------------SRHIVQIYSYHGGDEVRQHLEIDA-----HVGGVNDIAFSH--PNKQLCV 482 (1114)
Q Consensus 422 ~V~~l~~spdg~~las~~------------~dg~i~iwd~~~~~~~~~~~~l~~-----h~~~V~~v~~s~--d~~~~~l 482 (1114)
..-.++..|+|..+++++ .+|.|.++|.++.........+.+ .......+.+.+ ++...++
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 456677889886666652 689999999974311111112332 234566777755 4543233
Q ss_pred EEecC--CCCEEEEeCCCCcce----eEeecc-ccCEEEEeeccCCCceEEEEEec---C------------CeEEEEEc
Q 001248 483 ITCGD--DKTIKVWDATNGAKQ----YIFEGH-EAPVYSVCPHHKENIQFIFSTAL---D------------GKIKAWLY 540 (1114)
Q Consensus 483 ~s~~~--d~~i~iwd~~~~~~~----~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~---d------------~~i~~wd~ 540 (1114)
+.-.. +.+|.+|++..+... .++.+. -...+.+.+. ++|.+.++... | ..=.+|.+
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~--~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~ 208 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAV--GPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY 208 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEE--ETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEE
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEe--CCCCEEecCCcEeCCcccccchhhccCCccEEEEE
Confidence 33222 567888887654322 233322 1345666643 34555555431 1 11122222
Q ss_pred CCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEe-CCCeEEEEECCC-cce--EEEeccCC
Q 001248 541 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDS-VQL--LTSIDADG 616 (1114)
Q Consensus 541 ~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~--~~~~~~~~ 616 (1114)
+..+ ...+. ..-...+-++|+|+++.++.+. ..+.|+.|++.. ++. ...+...
T Consensus 209 d~~~-~~~~~---------------------~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~- 265 (355)
T 3sre_A 209 SPND-VRVVA---------------------EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFD- 265 (355)
T ss_dssp CTTC-CEEEE---------------------EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECS-
T ss_pred ECCe-EEEee---------------------cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCC-
Confidence 2111 10000 0011234466666666666554 578899998753 322 1223211
Q ss_pred CCCCcCeEEEcC-CCCEEEEEe
Q 001248 617 GLPASPRIRFNK-DGCLLAVST 637 (1114)
Q Consensus 617 ~~~~v~~~~~s~-d~~~l~~~~ 637 (1114)
...-.+++.+ +|++.+++.
T Consensus 266 --g~PDGi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 266 --TLVDNISVDPVTGDLWVGCH 285 (355)
T ss_dssp --SEEEEEEECTTTCCEEEEEE
T ss_pred --CCCceEEEeCCCCcEEEEec
Confidence 2245677777 477766554
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.64 E-value=1.3 Score=47.16 Aligned_cols=142 Identities=4% Similarity=-0.073 Sum_probs=69.9
Q ss_pred EEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeC-----C------
Q 001248 373 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS-----R------ 441 (1114)
Q Consensus 373 ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~-----d------ 441 (1114)
|++.|+ ..+.+||..+++-.. .. +........+.+...+++.++.|+. .
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~-~~-----------------~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 66 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYC-AS-----------------LSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMS 66 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEE-EE-----------------CCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEE
T ss_pred EEEEcC--CceEEECCCCCeEec-CC-----------------CCCCCCccceEEEEECCEEEEEcCcccCCCCCccccc
Confidence 566666 679999998876322 10 1111122233344458888888873 1
Q ss_pred CeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCC--------CCEEEEeCCCCccee--EeeccccC
Q 001248 442 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD--------KTIKVWDATNGAKQY--IFEGHEAP 511 (1114)
Q Consensus 442 g~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d--------~~i~iwd~~~~~~~~--~~~~h~~~ 511 (1114)
..+.+||..+++- .....+......-..+.+ +++ +++.|+.+ ..+.+||..+.+-.. .+......
T Consensus 67 ~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~~--~~~--lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 141 (315)
T 4asc_A 67 AYFLQFDHLDSEW-LGMPPLPSPRCLFGLGEA--LNS--IYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG 141 (315)
T ss_dssp EEEEEEETTTTEE-EECCCBSSCEESCEEEEE--TTE--EEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS
T ss_pred cceEEecCCCCeE-EECCCCCcchhceeEEEE--CCE--EEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc
Confidence 1277888887652 221122111111112222 444 55666632 458999988764221 11111111
Q ss_pred EEEEeeccCCCceEEEEEec-C-----CeEEEEEcCCC
Q 001248 512 VYSVCPHHKENIQFIFSTAL-D-----GKIKAWLYDNL 543 (1114)
Q Consensus 512 v~~~~~~~~~~~~~l~s~~~-d-----~~i~~wd~~~~ 543 (1114)
-..+. -++.+++.|+. + ..+.+||..+.
T Consensus 142 ~~~~~----~~~~iyv~GG~~~~~~~~~~~~~yd~~~~ 175 (315)
T 4asc_A 142 HTVLS----HMDLVYVIGGKGSDRKCLNKMCVYDPKKF 175 (315)
T ss_dssp CEEEE----ETTEEEEECCBCTTSCBCCCEEEEETTTT
T ss_pred eeEEE----ECCEEEEEeCCCCCCcccceEEEEeCCCC
Confidence 11111 13356677765 2 35777777653
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.41 E-value=1.5 Score=47.60 Aligned_cols=198 Identities=8% Similarity=-0.056 Sum_probs=96.1
Q ss_pred eCCCEEEEEeC-----------CeEEEEEcCCCccc--cccCCCCCCeEEEEEecCCCcEEEEEeCC-------------
Q 001248 828 KNDSYVMSASG-----------GKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDD------------- 881 (1114)
Q Consensus 828 ~d~~~l~~~~d-----------g~i~iwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~la~g~~d------------- 881 (1114)
-+++.++.|+. +.+.+||..+.+-. ..+......-.+++. . ++++++.|+.+
T Consensus 64 ~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~ 141 (357)
T 2uvk_A 64 IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-H-NGKAYVTGGVNQNIFNGYFEDLNE 141 (357)
T ss_dssp ETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE-E-TTEEEEEECCCHHHHHHHHHHHHH
T ss_pred ECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE-E-CCEEEEEeCcCCCcCcccccchhh
Confidence 36666666542 34889998765432 222211111122222 3 78888888865
Q ss_pred --------------------------CcEEEEEcccc--eEEEeecccccCeeEEEEcCCCCEEEEEeCC------CcEE
Q 001248 882 --------------------------SSIQIYNVRVD--EVKSKLKGHSKRITGLAFSHALNVLVSSGAD------SQLC 927 (1114)
Q Consensus 882 --------------------------g~v~iwd~~~~--~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D------~~v~ 927 (1114)
..+.+||..+. +.+..+......-.+++.. ++++++.|+.+ ..+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~ 220 (357)
T 2uvk_A 142 AGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVF 220 (357)
T ss_dssp HTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEE
T ss_pred cCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceE
Confidence 47899998764 3443333111110223332 56677777642 3577
Q ss_pred EEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEe-C----------------------CeEEEEEcCCCc
Q 001248 928 VWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH-E----------------------TQLAIFETTKLE 984 (1114)
Q Consensus 928 iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~-d----------------------~~i~iwd~~~~~ 984 (1114)
+||++... ..+..+....... ......+...++++++.++ + ..+.+||+.+.+
T Consensus 221 ~~d~d~~~-~~W~~~~~~~~~~---~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~ 296 (357)
T 2uvk_A 221 ELDFTGNN-LKWNKLAPVSSPD---GVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGK 296 (357)
T ss_dssp EEECC----CEEEECCCSSTTT---CCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---
T ss_pred EEEecCCC-CcEEecCCCCCCc---ccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCc
Confidence 78772211 1122222111110 0112223344566666632 1 257789988765
Q ss_pred eeeeeecCCCCcCeeEEEECCCCCEEEEEEcCC------eEEEEEcCCCeeeEEeC
Q 001248 985 CVKQWVPRESSAPITHATFSCDSQLVYACFLDA------TVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 985 ~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg------~I~vwd~~~~~~~~~~~ 1034 (1114)
-...-........ ..+...++++++.|+.++ .|.++++++++.+....
T Consensus 297 W~~~~~~p~~r~~--~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 297 WDKSGELSQGRAY--GVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp CEEEEECSSCCBS--SEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred eeeCCCCCCCccc--ceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence 4332221111111 122334788888888653 46777999988876655
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.16 E-value=2.3 Score=45.13 Aligned_cols=219 Identities=12% Similarity=0.070 Sum_probs=109.3
Q ss_pred CeEEEEEcCCCccccc-cCCCCCCeEEEEEecCCCcEEEEEeC----CC-------cEEEEEcccceE--EEeecccccC
Q 001248 839 GKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMD----DS-------SIQIYNVRVDEV--KSKLKGHSKR 904 (1114)
Q Consensus 839 g~i~iwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~la~g~~----dg-------~v~iwd~~~~~~--~~~l~~h~~~ 904 (1114)
..+..||..+.+-... +..........+... ++.+++.|+. ++ .+.+||..+++- +..+......
T Consensus 24 ~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 102 (318)
T 2woz_A 24 TAAVAYDPMENECYLTALAEQIPRNHSSIVTQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL 102 (318)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCSSEEEEECS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS
T ss_pred cceEEECCCCCceecccCCccCCccceEEEEE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc
Confidence 4588899887654331 121112222333334 7788888883 12 177888876542 2222221111
Q ss_pred eeEEEEcCCCCEEEEEeCC-------CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-e-C---
Q 001248 905 ITGLAFSHALNVLVSSGAD-------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H-E--- 972 (1114)
Q Consensus 905 V~~l~~s~d~~~l~s~s~D-------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~-d--- 972 (1114)
-..+.+ ++++++.|+.+ ..+.+||..+.+ +..+...... ..-.+++. .++++++.+ . +
T Consensus 103 ~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~---W~~~~~~p~~----r~~~~~~~-~~~~iyv~GG~~~~~~ 172 (318)
T 2woz_A 103 FGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAK---WSEVKNLPIK----VYGHNVIS-HNGMIYCLGGKTDDKK 172 (318)
T ss_dssp CEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTE---EEEECCCSSC----EESCEEEE-ETTEEEEECCEESSSC
T ss_pred cceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCC---EeECCCCCCc----ccccEEEE-ECCEEEEEcCCCCCCC
Confidence 222223 67777888764 247788887643 2222111110 01112222 466666663 2 1
Q ss_pred --CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcC-----CeEEEEEcCCCeeeEEeCCCcccCCCCCC
Q 001248 973 --TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRINPSAYLPAGVSS 1045 (1114)
Q Consensus 973 --~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D-----g~I~vwd~~~~~~~~~~~~~~~~~~~~~~ 1045 (1114)
..+.+||..+.+-...-.... ...-.+++. -++++++.|+.+ ..+.+||..+.+-... . .+|.....
T Consensus 173 ~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~---~~p~~r~~ 246 (318)
T 2woz_A 173 CTNRVFIYNPKKGDWKDLAPMKT-PRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM-T---EFPQERSS 246 (318)
T ss_dssp BCCCEEEEETTTTEEEEECCCSS-CCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEEC-C---CCSSCCBS
T ss_pred ccceEEEEcCCCCEEEECCCCCC-CcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEEC-C---CCCCcccc
Confidence 358999998875433221111 111112222 266777777643 3578899888764432 1 12222111
Q ss_pred CCccceEEEecCCCCCeEEEEeCC--------------CcEEEEeccCCC
Q 001248 1046 SNVHPLVIAAHPQEPNEFALGLSD--------------GGVHVFEPLESE 1081 (1114)
Q Consensus 1046 ~~v~~~~~~~~~~d~~~l~s~~~D--------------g~v~vW~i~~~~ 1081 (1114)
+ +++.. ++.+++.|+.+ ..+.++|+.+.+
T Consensus 247 ~-----~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 247 I-----SLVSL--AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp C-----EEEEE--TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred e-----EEEEE--CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence 1 22222 46777887764 357788887755
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=95.02 E-value=1.3 Score=46.86 Aligned_cols=188 Identities=12% Similarity=0.072 Sum_probs=97.2
Q ss_pred eCCCEEEEEeC----------CeEEEEEcCCCccc--cccCCCCCCeEEEEEecCCCcEEEEEeCC-----CcEEEEEcc
Q 001248 828 KNDSYVMSASG----------GKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDD-----SSIQIYNVR 890 (1114)
Q Consensus 828 ~d~~~l~~~~d----------g~i~iwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~la~g~~d-----g~v~iwd~~ 890 (1114)
-+++.++.|+. +.+.+||..+.+-. ..+........++.+ ++++++.|+.+ ..+.+||..
T Consensus 69 ~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~ 145 (308)
T 1zgk_A 69 VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPE 145 (308)
T ss_dssp ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE---TTEEEEECCEETTEECCCEEEEETT
T ss_pred ECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE---CCEEEEEcCCCCCcccccEEEECCC
Confidence 36666666542 35888998765432 222211122222322 67788887754 368899987
Q ss_pred cce--EEEeecccccCeeEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccC
Q 001248 891 VDE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 963 (1114)
Q Consensus 891 ~~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspd 963 (1114)
+.+ .+..+......-.++.+ ++++++.|+.+ ..+.+||+.+.+= ..+...... ..-..++.. +
T Consensus 146 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W---~~~~~~p~~----r~~~~~~~~-~ 215 (308)
T 1zgk_A 146 RDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEW---RMITAMNTI----RSGAGVCVL-H 215 (308)
T ss_dssp TTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEE---EECCCCSSC----CBSCEEEEE-T
T ss_pred CCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeE---eeCCCCCCc----cccceEEEE-C
Confidence 754 22222221122222333 67777777765 4588999877432 222111111 111222222 6
Q ss_pred CcEEEEE-eC-----CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcC-----CeEEEEEcCCCeee
Q 001248 964 QIHFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLR 1030 (1114)
Q Consensus 964 g~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D-----g~I~vwd~~~~~~~ 1030 (1114)
+++++.+ .+ ..+.+||+.+.+-...-.... ...-.+++. -++++++.|+.+ ..|.+||..+.+-.
T Consensus 216 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 291 (308)
T 1zgk_A 216 NCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKH-RRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTWS 291 (308)
T ss_dssp TEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred CEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCC-CccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence 6666664 32 469999998775433221111 111112222 267777777654 35788888877644
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=94.77 E-value=2.9 Score=43.84 Aligned_cols=173 Identities=14% Similarity=0.088 Sum_probs=98.6
Q ss_pred EeeCCCEEEEEe---CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCC--------------CcEEEEE
Q 001248 826 LSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD--------------SSIQIYN 888 (1114)
Q Consensus 826 ~s~d~~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~d--------------g~v~iwd 888 (1114)
++.++.+|.... ++.|...+..... ...+.. -.+--+++ ++..|+..... ..|+..+
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~----~~~~~i~~-~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~ 94 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSN----DTAMYINA-DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIK 94 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEE----EEEEEEEE-CSSEEEEEEECC------CCSSCCSEEEEEEE
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccC----CceeeEEE-cCCEEEEEECCCCcccccceeccCCCeEEEEe
Confidence 446777777765 4677777765433 333331 12345677 66666665432 3567777
Q ss_pred cccceEEEeecccccCeeEEEEcCCCCEEEEEe--CCC--cEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCC
Q 001248 889 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG--ADS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ 964 (1114)
Q Consensus 889 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s--~D~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg 964 (1114)
+..++. ..+.. . .+..|++++++|+-.. .++ .|..-+++.... ..+.. . .+ .+|+++|
T Consensus 95 ~dg~~~-~~l~~--~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~--~~lt~---~------~~--~~~~~~g 156 (302)
T 3s25_A 95 RNGHGS-TVLDP--D--PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEK--KKIKN---H------YL--FTCNTSD 156 (302)
T ss_dssp TTSCCC-EEEEC--S--CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCC--EEEES---S------CC--CCSEEET
T ss_pred CCCCcc-eEeec--C--CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCe--EEEeC---C------Cc--eEeeEEC
Confidence 665542 22221 1 1236788899988776 344 444555554322 11111 1 11 3568899
Q ss_pred cEEEEEe--CCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCC--eEEEEEcCCCe
Q 001248 965 IHFLVVH--ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA--TVCVFSAANLK 1028 (1114)
Q Consensus 965 ~~l~~~~--d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg--~I~vwd~~~~~ 1028 (1114)
+.|.-.. ..+|.+.++..+.....+. + ... ..+.|++++|+-...++ .|..-+++.+.
T Consensus 157 ~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~ 218 (302)
T 3s25_A 157 RYFYYNNPKNGQLYRYDTASQSEALFYD--C---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN 218 (302)
T ss_dssp TEEEEECTTTCCEEEEETTTTEEEEEEC--S---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred CEEEEEeCCCceEEEEECCCCCEEEEeC--C---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC
Confidence 9988754 4678888887665544332 1 222 34569999988776543 56666766554
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=94.77 E-value=5.2 Score=42.61 Aligned_cols=113 Identities=14% Similarity=0.104 Sum_probs=65.9
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCC---CC
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---GS 433 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~ 433 (1114)
.-...+.|+|.|||+ ++++-...|.|++++..+++......+ . .+..........|+|+|| +.
T Consensus 30 gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~------------~-~v~~~g~~GllGia~~Pdf~~~g 95 (347)
T 3das_A 30 GLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGEV------------P-GVSPSGEGGLLGIALSPDYASDH 95 (347)
T ss_dssp CCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEEC------------T-TCCCBTTBSEEEEEECTTHHHHC
T ss_pred CCCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeeccc------------C-ceeecCCCCceeeEeccccccCC
Confidence 556789999999998 577655589999998766554211000 0 122334567899999995 34
Q ss_pred eEEEE-e--CCCeEEEEEccCCc----e---eeeeE-eec-cccCCeeEEEecCCCCeeEEEEe
Q 001248 434 LFGVA-Y--SRHIVQIYSYHGGD----E---VRQHL-EID-AHVGGVNDIAFSHPNKQLCVITC 485 (1114)
Q Consensus 434 ~las~-~--~dg~i~iwd~~~~~----~---~~~~~-~l~-~h~~~V~~v~~s~d~~~~~l~s~ 485 (1114)
+|... + .++.|.-|.+..+. . ...+. .+. +....-..|+|.|||. +.++.
T Consensus 96 ~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~--Lyvt~ 157 (347)
T 3das_A 96 MVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM--LYAGT 157 (347)
T ss_dssp EEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC--EEEEC
T ss_pred EEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC--EEEEE
Confidence 44332 2 34556667665421 1 11111 121 1122346899999997 44543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=94.77 E-value=0.96 Score=56.67 Aligned_cols=213 Identities=10% Similarity=0.106 Sum_probs=125.6
Q ss_pred EEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCCe
Q 001248 364 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI 443 (1114)
Q Consensus 364 v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~ 443 (1114)
.-.+|..+ ++|.-. ..++.|+|+++..++.... ....|..=.|-.+. .|+..+ +..
T Consensus 71 AIMnP~~~-iiALra-g~~lQiFnl~~k~klks~~--------------------~~e~VvfWkWis~~-~l~lVT-~~a 126 (1630)
T 1xi4_A 71 AIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHT--------------------MTDDVTFWKWISLN-TVALVT-DNA 126 (1630)
T ss_pred hccCCCcc-eEEEec-CCeEEEeehHHhhhhcccc--------------------cCCCceEEEecCCC-eeEEEc-CCe
Confidence 34567766 566543 6789999999887765311 12357777776444 344443 356
Q ss_pred EEEEEccCCceeeeeEeeccc----cCCeeEEEecCCCCeeEEEEec------CCCCEEEEeCCCCcceeEeeccccCEE
Q 001248 444 VQIYSYHGGDEVRQHLEIDAH----VGGVNDIAFSHPNKQLCVITCG------DDKTIKVWDATNGAKQYIFEGHEAPVY 513 (1114)
Q Consensus 444 i~iwd~~~~~~~~~~~~l~~h----~~~V~~v~~s~d~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~h~~~v~ 513 (1114)
|.-|++.+..... ..+..| ...|..-.-+++.+++ +++|= -.|.+.+|.++.+. -+.+.||.+...
T Consensus 127 VyHW~~~~~s~P~--k~fdR~~~L~~~QIinY~~d~~~kW~-~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~ 202 (1630)
T 1xi4_A 127 VYHWSMEGESQPV--KMFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFA 202 (1630)
T ss_pred EEEeccCCCCccH--HHHhcchhcccCeeEEeeeCCCCCeE-EEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhh
Confidence 9999997533221 123333 3567778888899873 33332 34788999876543 456677766655
Q ss_pred EEeeccCCCceEEEEEec----CCeEEEEEcCCC-CCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCE
Q 001248 514 SVCPHHKENIQFIFSTAL----DGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 588 (1114)
Q Consensus 514 ~~~~~~~~~~~~l~s~~~----d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~ 588 (1114)
.+.....+....+++-.. .+.+++-++... .... .-......+.|.|+.. ..-...+..++.-..
T Consensus 203 ~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~---~f~kk~~~~~~~~~~~-------~Dfpv~~~vs~k~g~ 272 (1630)
T 1xi4_A 203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ---PFPKKAVDVFFPPEAQ-------NDFPVAMQISEKHDV 272 (1630)
T ss_pred eeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCC---CCccccccccCCcccc-------cCcceEEEeccccCE
Confidence 444322222222333222 267888887543 1111 1111233445555432 122334666777778
Q ss_pred EEEEeCCCeEEEEECCCcceEEEecc
Q 001248 589 FLAAGDDFSIKFWDMDSVQLLTSIDA 614 (1114)
Q Consensus 589 l~~~~~dg~i~iwd~~~~~~~~~~~~ 614 (1114)
+...+.-|.|++||+.++.++..-..
T Consensus 273 iy~itk~G~~~~~d~~t~~~i~~~ri 298 (1630)
T 1xi4_A 273 VFLITKYGYIHLYDLETGTCIYMNRI 298 (1630)
T ss_pred EEEEecCceEEEEecccchhhhhccc
Confidence 88899999999999999988765543
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=94.32 E-value=1.5 Score=49.05 Aligned_cols=246 Identities=11% Similarity=0.089 Sum_probs=135.0
Q ss_pred eCCCEEEEEe--CCeEEEEEcCCCccccccCC-CCCCeEEEEEe--cCCCcEEEEEeC-------CCcE---------EE
Q 001248 828 KNDSYVMSAS--GGKISLFNMMTFKTMATFMP-PPPAATFLAFH--PQDNNIIAIGMD-------DSSI---------QI 886 (1114)
Q Consensus 828 ~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s--p~d~~~la~g~~-------dg~v---------~i 886 (1114)
.||+||..-. +..|...++...++-+.+.. ....+..+.|- | +..+++.+++ ||.. -+
T Consensus 140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~ 218 (638)
T 3sbq_A 140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTM 218 (638)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEE
T ss_pred eeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceE
Confidence 5889999988 57788888888776554432 34567777775 5 5556665552 3321 11
Q ss_pred ---EEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCC---------------cEEEEeCCCC-------cccccc-
Q 001248 887 ---YNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS---------------QLCVWSSDGW-------EKQKNR- 940 (1114)
Q Consensus 887 ---wd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~---------------~v~iwd~~~~-------~~~~~~- 940 (1114)
.|..+.+....+.- .+..-.+...++|++.++.+... .+.++|+..- +.....
T Consensus 219 f~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g 297 (638)
T 3sbq_A 219 YNAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD 297 (638)
T ss_dssp EEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred EEEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence 12222222111110 12233345567888888776542 3556664321 110000
Q ss_pred -ccccCCCCC------------CCCCCceEEEEccCCcEEEEE--eCCeEEEEEcCCCce-------------eeeeecC
Q 001248 941 -FLQIPTGRT------------PTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLEC-------------VKQWVPR 992 (1114)
Q Consensus 941 -~~~~~~~~~------------~~~~~i~~v~fspdg~~l~~~--~d~~i~iwd~~~~~~-------------~~~~~~~ 992 (1114)
-....++.. +.......+.++|||++++++ .+.++.++|..+... .....
T Consensus 298 ~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-- 375 (638)
T 3sbq_A 298 SKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-- 375 (638)
T ss_dssp CCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--
T ss_pred CCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc--
Confidence 011111111 112345788999999999995 577899999875321 11221
Q ss_pred CCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCC----------eeeEEeCCCcccCCCCCCCCccceEEEecCCCCCe
Q 001248 993 ESSAPITHATFSCDSQLVYACFLDATVCVFSAANL----------KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNE 1062 (1114)
Q Consensus 993 ~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~----------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~ 1062 (1114)
-.......+|.++|.-..+-.-|..|..|++... ..+.++..+....+.|.+. .=.-.+ ||++
T Consensus 376 -~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~-----get~~~-dGk~ 448 (638)
T 3sbq_A 376 -LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASL-----CETNEA-DGKW 448 (638)
T ss_dssp -CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETT-----TTSTTC-CSCE
T ss_pred -CCCcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCC-----CccCCC-CccE
Confidence 1456789999999944445558999999999764 4555555332222111100 001123 6777
Q ss_pred EEEEeC---CC----------cEEEEeccCCCCcc
Q 001248 1063 FALGLS---DG----------GVHVFEPLESEGKW 1084 (1114)
Q Consensus 1063 l~s~~~---Dg----------~v~vW~i~~~~~~~ 1084 (1114)
|++... |. +-.+.||+..+.++
T Consensus 449 lv~lnK~skdrfl~vGpl~pen~QlidIsGdkM~l 483 (638)
T 3sbq_A 449 LVALSKFSKDRFLPVGPLHPENDQLIDISGDEMKL 483 (638)
T ss_dssp EEEEESCCTTSSCCCSSSCCEEEEEEECSSSSCEE
T ss_pred EEEecccccccCcCCCCCCCCcceeEecCCCceEE
Confidence 777642 32 44777777666333
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=94.25 E-value=4 Score=45.72 Aligned_cols=110 Identities=10% Similarity=0.089 Sum_probs=61.4
Q ss_pred cCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCC--CCCCCCceEEEEccC---CcEEEE--Ee----
Q 001248 903 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR--TPTAQSDTRVQFHQD---QIHFLV--VH---- 971 (1114)
Q Consensus 903 ~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~--~~~~~~i~~v~fspd---g~~l~~--~~---- 971 (1114)
...++|+|.|||+++++-...+.|++++..++.... ........ ......+..++|+|| +.+|.+ +.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~--~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKT--VFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE--EEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeE--EecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 346799999999977765444568888765443221 11111111 011246679999995 555544 32
Q ss_pred --------CCeEEEEEcCCC-------ceee-eeecCCCCcCeeEEEECCCCCEEEEEEc
Q 001248 972 --------ETQLAIFETTKL-------ECVK-QWVPRESSAPITHATFSCDSQLVYACFL 1015 (1114)
Q Consensus 972 --------d~~i~iwd~~~~-------~~~~-~~~~~~h~~~v~~l~~s~dg~~l~s~s~ 1015 (1114)
...|.-|+.... +.+. .+. .........|+|.|||.+.++.+.
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p-~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLP-SSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEEC-CCSSCCEEEEEECTTSCEEEEECC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCC-CCCCCCCCeEeECCCCeEEEEECC
Confidence 234655655332 1111 121 111234789999999987666543
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=93.92 E-value=2.4 Score=45.02 Aligned_cols=193 Identities=7% Similarity=0.003 Sum_probs=96.3
Q ss_pred EEeeCCCEEEEEe-C----C-------eEEEEEcCCCcccc--ccCCCCCCeEEEEEecCCCcEEEEEeCC-------Cc
Q 001248 825 ALSKNDSYVMSAS-G----G-------KISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDD-------SS 883 (1114)
Q Consensus 825 ~~s~d~~~l~~~~-d----g-------~i~iwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~la~g~~d-------g~ 883 (1114)
+...+++.++.|+ . + .+.+||..+.+-.. .+.........+.+ ++++++.|+.+ ..
T Consensus 52 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~ 128 (318)
T 2woz_A 52 IVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV---DDKIYVVAGKDLQTEASLDS 128 (318)
T ss_dssp EECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE---TTEEEEEEEEBTTTCCEEEE
T ss_pred EEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE---CCEEEEEcCccCCCCcccce
Confidence 3445677777765 1 1 17778877644322 22211112222222 57788888754 35
Q ss_pred EEEEEcccce--EEEeecccccCeeEEEEcCCCCEEEEEeCC------CcEEEEeCCCCccccccccccCCCCCCCCCCc
Q 001248 884 IQIYNVRVDE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD 955 (1114)
Q Consensus 884 v~iwd~~~~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 955 (1114)
+.+||..+.+ .+..+......-.++. .++++++.|+.+ ..+.+||+.+.+ +..+...... ..-
T Consensus 129 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~---W~~~~~~p~~----r~~ 199 (318)
T 2woz_A 129 VLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD---WKDLAPMKTP----RSM 199 (318)
T ss_dssp EEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTE---EEEECCCSSC----CBS
T ss_pred EEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCE---EEECCCCCCC----ccc
Confidence 8888987653 2222221111111222 367777777642 358899988743 2222111110 111
Q ss_pred eEEEEccCCcEEEEE-eC-----CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcC-------------
Q 001248 956 TRVQFHQDQIHFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD------------- 1016 (1114)
Q Consensus 956 ~~v~fspdg~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D------------- 1016 (1114)
..++. -+++.++.+ .+ ..+.+||+.+.+-...-........ .+++ .-++++++.|+.+
T Consensus 200 ~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~ 276 (318)
T 2woz_A 200 FGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSS-ISLV-SLAGSLYAIGGFAMIQLESKEFAPTE 276 (318)
T ss_dssp CEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBS-CEEE-EETTEEEEECCBCCBC----CCBCCB
T ss_pred ceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccc-eEEE-EECCEEEEECCeeccCCCCceeccce
Confidence 22222 356666663 22 3577899887654332211111111 1222 2366777777654
Q ss_pred -CeEEEEEcCCCeeeEE
Q 001248 1017 -ATVCVFSAANLKLRCR 1032 (1114)
Q Consensus 1017 -g~I~vwd~~~~~~~~~ 1032 (1114)
..+.+||..+.+-...
T Consensus 277 ~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 277 VNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp CCCEEEEETTTTEEEEE
T ss_pred eeeEEEEeCCCCEehhh
Confidence 3588889888765443
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=93.32 E-value=7.7 Score=40.10 Aligned_cols=223 Identities=13% Similarity=0.067 Sum_probs=116.3
Q ss_pred CccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeec
Q 001248 820 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK 899 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~ 899 (1114)
.|..++....- .++.. ||.|..|-......+..-......|..++... ...++. . ||.|+.|-......+..-.
T Consensus 25 ~i~~ia~G~~h-~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN--YHSLAL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSSE-EEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS--SEEEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCCe-EEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC--CEEEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence 56666664432 33333 89999997654332221111123577777653 445555 5 9999999865422111111
Q ss_pred ccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEE
Q 001248 900 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFE 979 (1114)
Q Consensus 900 ~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd 979 (1114)
.-...|..|+...+ ..+.-. ||.|..|-......... ... ....|..++...+... +.. |+.|..|-
T Consensus 99 ~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~-~~~-------~~~~i~~i~~G~~~~~-~l~-~G~v~~wG 165 (282)
T 3qhy_B 99 EARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTV-PAE-------AQSGVTALDGGVYTAL-AVK-NGGVIAWG 165 (282)
T ss_dssp GGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSC-CGG-------GGSSEEEEEECSSEEE-EEE-TTEEEEEE
T ss_pred ccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCC-Ccc-------CCCCeEEEEcccCEEE-EEE-CCEEEEec
Confidence 11346777877644 333344 99999997765322111 000 0123555544433322 224 89999997
Q ss_pred cCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCC
Q 001248 980 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1059 (1114)
Q Consensus 980 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d 1059 (1114)
......+.... .-...|..++...+.. ++. .||.|+.|=....-.+. .|.. ....+. .++--.
T Consensus 166 ~n~~gqlg~p~--~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg-------~p~~-~~~~v~--~i~~G~-- 228 (282)
T 3qhy_B 166 DNYFGQTTVPA--EAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTT-------VPTE-ALSGVS--AIASGE-- 228 (282)
T ss_dssp CCTTSTTSCCG--GGGSSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTC-------CCGG-GGSSCC--EEEECS--
T ss_pred CCCCCCCCCce--ecCCCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCC-------CCcc-cCCCce--EEEcCC--
Confidence 65433322111 1134677777654433 333 59999999765432221 1110 011133 444332
Q ss_pred CCeEEEEeCCCcEEEEeccCC
Q 001248 1060 PNEFALGLSDGGVHVFEPLES 1080 (1114)
Q Consensus 1060 ~~~l~s~~~Dg~v~vW~i~~~ 1080 (1114)
...++.. ||.|+.|--...
T Consensus 229 ~h~~al~--~g~v~~wG~n~~ 247 (282)
T 3qhy_B 229 WYSLALK--NGKVIAWGSSRT 247 (282)
T ss_dssp SCEEEEE--TTEEEEESTTCC
T ss_pred CEEEEEE--CCEEEEecCCCC
Confidence 3444444 999999986553
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=93.31 E-value=13 Score=41.76 Aligned_cols=101 Identities=16% Similarity=0.103 Sum_probs=70.6
Q ss_pred CCCccEEEEeeCCCEEEEEe--CCeEEEEEcCCCcc-------------ccccCCCCCCeEEEEEecCCCcEEEEEeCCC
Q 001248 818 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKT-------------MATFMPPPPAATFLAFHPQDNNIIAIGMDDS 882 (1114)
Q Consensus 818 ~~~v~~v~~s~d~~~l~~~~--dg~i~iwd~~~~~~-------------~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg 882 (1114)
....-.+.++|||+++++++ +.++.++|+..... ..... -.......+|.+ +|+...+-.-|.
T Consensus 322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidS 399 (638)
T 3sbq_A 322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDS 399 (638)
T ss_dssp SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTT
T ss_pred CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecc
Confidence 34455789999999999988 78999999874211 11111 234578899999 787667777999
Q ss_pred cEEEEEcccc----------eEEEeecccccCeeEEEE------cCCCCEEEEEe
Q 001248 883 SIQIYNVRVD----------EVKSKLKGHSKRITGLAF------SHALNVLVSSG 921 (1114)
Q Consensus 883 ~v~iwd~~~~----------~~~~~l~~h~~~V~~l~~------s~d~~~l~s~s 921 (1114)
+|.-|++... ..+.++.-|-. +-.+.- .+||++|++..
T Consensus 400 qvvkWni~~a~~~~~g~~~~~v~~k~dv~Yq-pGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 400 QVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQ-PGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEEEEHHHHHHHHTTCCCCCEEEEEECSSC-EEEEEETTTTSTTCCSCEEEEEE
T ss_pred eEEEEeccHHHHHhcCccCCeeeeccccccC-CcccccCCCccCCCCccEEEEec
Confidence 9999999764 45556655543 223333 47999999874
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=92.51 E-value=14 Score=40.27 Aligned_cols=260 Identities=10% Similarity=0.034 Sum_probs=118.4
Q ss_pred CCCccEEEEee--CCCEEEEEeCC----eEEEEEcCCCc---cccc---cCC--------CCCCeEEEEEecCC-CcEEE
Q 001248 818 EEAVPCFALSK--NDSYVMSASGG----KISLFNMMTFK---TMAT---FMP--------PPPAATFLAFHPQD-NNIIA 876 (1114)
Q Consensus 818 ~~~v~~v~~s~--d~~~l~~~~dg----~i~iwd~~~~~---~~~~---~~~--------~~~~i~~l~~sp~d-~~~la 876 (1114)
...|.+++++| ++...+.+..| .|...+ ..++ .+.. +.. ....|.++++.|.+ ...|.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 34688999998 55566555554 444332 2222 2211 111 11257789998743 45555
Q ss_pred EEeCCCcEEEEEcc--cceEEEeecc----------------cccCeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCccc
Q 001248 877 IGMDDSSIQIYNVR--VDEVKSKLKG----------------HSKRITGLAFSHA-LNVLVSSGADSQLCVWSSDGWEKQ 937 (1114)
Q Consensus 877 ~g~~dg~v~iwd~~--~~~~~~~l~~----------------h~~~V~~l~~s~d-~~~l~s~s~D~~v~iwd~~~~~~~ 937 (1114)
++...+.|+..+-. +.+.+..+.. ....|.+|.+.|. ...|..+..++.|...+-. ++
T Consensus 133 ~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~Dg-G~-- 209 (394)
T 3b7f_A 133 AGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDA-GT-- 209 (394)
T ss_dssp EEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESST-TS--
T ss_pred EEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECCC-CC--
Confidence 56556655544311 2222221111 1235788999873 3444445444434443222 11
Q ss_pred ccccccc-CC-CCCC-----CCCCceEEEEccC-CcEEEEEeCCeEEEEEcCCCceeeeeecCCCC---cCeeEEEECC-
Q 001248 938 KNRFLQI-PT-GRTP-----TAQSDTRVQFHQD-QIHFLVVHETQLAIFETTKLECVKQWVPRESS---APITHATFSC- 1005 (1114)
Q Consensus 938 ~~~~~~~-~~-~~~~-----~~~~i~~v~fspd-g~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~---~~v~~l~~s~- 1005 (1114)
.+..... .. ...+ ....+..+++.|+ ...|.++..+.|...+- .++.-..+...-.. ..+.+++++|
T Consensus 210 tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~ 288 (394)
T 3b7f_A 210 DWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQR 288 (394)
T ss_dssp SCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEET-TTTEEECGGGGSCTTTCSCEEEEEECSS
T ss_pred CceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCC-CCCcceECCCCCCCCCccceEEEEECCC
Confidence 1111111 00 0000 0124788999986 35555555555554432 23222222110001 3456788876
Q ss_pred CCCEEEEEEc-----------CCeEEEEEcCC-CeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEE
Q 001248 1006 DSQLVYACFL-----------DATVCVFSAAN-LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVH 1073 (1114)
Q Consensus 1006 dg~~l~s~s~-----------Dg~I~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~ 1073 (1114)
+...|+++.. ++...||...+ |+.-..+. ..+|....-..+....++++|.++..|+.++.++.|+
T Consensus 289 ~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~--~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~ 366 (394)
T 3b7f_A 289 DPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD--RGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIW 366 (394)
T ss_dssp CTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC--BTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEE
T ss_pred CCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC--CCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEE
Confidence 3344554432 33345565544 44433332 1122211000011125777776666677777666654
Q ss_pred EEeccCCCCcccC
Q 001248 1074 VFEPLESEGKWGV 1086 (1114)
Q Consensus 1074 vW~i~~~~~~~~~ 1086 (1114)
.-.++-..|..
T Consensus 367 --~S~D~G~tW~~ 377 (394)
T 3b7f_A 367 --ASADEGEHWQC 377 (394)
T ss_dssp --EESSTTSBCEE
T ss_pred --EECCCCCCceE
Confidence 33333344543
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=92.32 E-value=12 Score=39.00 Aligned_cols=107 Identities=9% Similarity=0.090 Sum_probs=64.6
Q ss_pred EEEEcCCCCeEEEEEecC-------------CcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEc
Q 001248 363 SMDFHPVQQTLLLVGTNV-------------GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 429 (1114)
Q Consensus 363 ~v~~spdg~~ll~tg~~d-------------g~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 429 (1114)
+--++++|.+|..+...+ +.|+..+++.++... +... .+..|+
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~--------------------l~~~----~~~~~s 112 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV--------------------LDPD----PCIYAS 112 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE--------------------EECS----CEEEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE--------------------eecC----CccEEE
Confidence 456789999977776654 357777776654322 1111 223788
Q ss_pred CCCCeEEEEe--CC--CeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcce
Q 001248 430 PDGSLFGVAY--SR--HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ 502 (1114)
Q Consensus 430 pdg~~las~~--~d--g~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 502 (1114)
+++++|+-.. .+ ..|...++.... .. .+..+.. .+|+++++.+ ..+......|.+-++..+...
T Consensus 113 ~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~---~lt~~~~----~~~~~~g~~i-y~t~~g~~~Iy~~~l~g~~~~ 180 (302)
T 3s25_A 113 LIGNYIYYLHYDTQTATSLYRIRIDGEE-KK---KIKNHYL----FTCNTSDRYF-YYNNPKNGQLYRYDTASQSEA 180 (302)
T ss_dssp EETTEEEEEEESSSSCEEEEEEETTSCC-CE---EEESSCC----CCSEEETTEE-EEECTTTCCEEEEETTTTEEE
T ss_pred EeCCEEEEEeecCCCCceEEEEECCCCC-eE---EEeCCCc----eEeeEECCEE-EEEeCCCceEEEEECCCCCEE
Confidence 8999999876 33 345555555433 22 2333322 4678889863 344445678888887765543
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=91.62 E-value=6 Score=47.24 Aligned_cols=194 Identities=10% Similarity=0.073 Sum_probs=105.0
Q ss_pred eCCCEEEEEe-C----CeEEEEEcCCCcccccc--------CCCCCCeEEEEEecCCCcEEEEEeCCC------cEEEEE
Q 001248 828 KNDSYVMSAS-G----GKISLFNMMTFKTMATF--------MPPPPAATFLAFHPQDNNIIAIGMDDS------SIQIYN 888 (1114)
Q Consensus 828 ~d~~~l~~~~-d----g~i~iwd~~~~~~~~~~--------~~~~~~i~~l~~sp~d~~~la~g~~dg------~v~iwd 888 (1114)
.++..++.|+ + +.+.+||..+.+-...- ........++.+.. ++++++.|+.++ .+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence 5667777776 3 45889998775433221 11112233444433 567888887543 588999
Q ss_pred cccc--eEEEeecccccCeeEEEEcCCCCEEEEEeCCC--cEEEEeCCCCcccccccccc----CCCCCCCCCCceEEEE
Q 001248 889 VRVD--EVKSKLKGHSKRITGLAFSHALNVLVSSGADS--QLCVWSSDGWEKQKNRFLQI----PTGRTPTAQSDTRVQF 960 (1114)
Q Consensus 889 ~~~~--~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~--~v~iwd~~~~~~~~~~~~~~----~~~~~~~~~~i~~v~f 960 (1114)
..+. +.+..+......- +++...++++++.||.++ .+.+||..+.. +..+.. +... ..-..+.+
T Consensus 475 ~~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~---W~~~~~~g~~p~~r----~~~~a~v~ 546 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEI---FKDVTPKDEFFQNS----LVSAGLEF 546 (695)
T ss_dssp TTTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTE---EEECCCSSGGGGSC----CBSCEEEE
T ss_pred CCCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCc---eEEccCCCCCCCcc----cceeEEEE
Confidence 8874 3333332211111 223324788899888765 68999988743 222221 1111 12234566
Q ss_pred ccC-CcEEEEE-e--C-----CeEEEEEcCCCce------eeeeecCCCCcCeeEEEECCCCCEEEEEEcC--------C
Q 001248 961 HQD-QIHFLVV-H--E-----TQLAIFETTKLEC------VKQWVPRESSAPITHATFSCDSQLVYACFLD--------A 1017 (1114)
Q Consensus 961 spd-g~~l~~~-~--d-----~~i~iwd~~~~~~------~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D--------g 1017 (1114)
..+ ++.++.| . + ..+.+||+.+... ............-.+++...++++++.|+.+ .
T Consensus 547 ~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 626 (695)
T 2zwa_A 547 DPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTN 626 (695)
T ss_dssp ETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTT
T ss_pred eCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCC
Confidence 655 5566654 2 2 3588999988771 1111100001111223333347777777743 4
Q ss_pred eEEEEEcCCCeee
Q 001248 1018 TVCVFSAANLKLR 1030 (1114)
Q Consensus 1018 ~I~vwd~~~~~~~ 1030 (1114)
.|.+||..+.+-.
T Consensus 627 ~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 627 SIISLDPLSETLT 639 (695)
T ss_dssp SEEEEETTTTEEE
T ss_pred eEEEEECCCCeEE
Confidence 5999999988765
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=89.61 E-value=29 Score=38.61 Aligned_cols=115 Identities=13% Similarity=0.133 Sum_probs=61.2
Q ss_pred CCceEEEEcCCCC-eEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCccccccccc----CCCCCeeEEEEcCC--
Q 001248 359 SSPMSMDFHPVQQ-TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVK----DPGVSVNRVIWSPD-- 431 (1114)
Q Consensus 359 ~~v~~v~~spdg~-~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~----~h~~~V~~l~~spd-- 431 (1114)
...+.|+|.|||. +|+++ ...|.|++++...... . .. +.++. ..+.. +.......|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~-er~G~i~~~~~~g~~~-~-~~--~~~~~-------~~~~~g~~~~~e~Gllgia~~P~f~ 81 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFIL-EKEGYVKILTPEGEIF-K-EP--YLDIH-------KLVQSGIKGGDERGLLSLAFHPNYK 81 (463)
T ss_dssp SSEEEEECCSSSSCCEEEE-ETTTEEEEECTTSCBC-S-SC--SEECT-------TTBCCCCSSSCCCSEEEEEECTTHH
T ss_pred CCceEEEECCCCCeEEEEE-eCCceEEEEeCCCCee-e-ee--ecCCc-------ceeccCccccCCCcceeeEeCCCCc
Confidence 5679999999995 54554 6789999997543211 0 00 01110 11111 22467889999996
Q ss_pred --CCeEEEEeC--C----------CeEEEEEccCC--c-----eeeeeEeec--cccCCeeEEEecCCCCeeEEEEec
Q 001248 432 --GSLFGVAYS--R----------HIVQIYSYHGG--D-----EVRQHLEID--AHVGGVNDIAFSHPNKQLCVITCG 486 (1114)
Q Consensus 432 --g~~las~~~--d----------g~i~iwd~~~~--~-----~~~~~~~l~--~h~~~V~~v~~s~d~~~~~l~s~~ 486 (1114)
+.+.++-+. + ..|.-|.+..+ . ..+.+..+. .....-..|+|.|||. ||+.+|.
T Consensus 82 ~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~-LYv~~Gd 158 (463)
T 2wg3_C 82 KNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF-LYIILGD 158 (463)
T ss_dssp HHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC-EEEEECC
T ss_pred CCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc-EEEEeCC
Confidence 444444332 1 13555666432 0 111111221 1223467999999997 3555554
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=89.21 E-value=22 Score=36.60 Aligned_cols=184 Identities=9% Similarity=0.011 Sum_probs=98.7
Q ss_pred CccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeec
Q 001248 820 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK 899 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~ 899 (1114)
.|..++...+-. ++. .||.|..|-......+-.-......|..++... ...++ -. ||.|+.|-......+....
T Consensus 64 ~i~~ia~G~~hs-~~l-~~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~--~hs~a-l~-~G~v~~wG~n~~gqlg~~~ 137 (282)
T 3qhy_B 64 GVDAIAAGNYHS-LAL-KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA--WASYA-LK-DGKVIAWGDDSDGQTTVPA 137 (282)
T ss_dssp CCCEEEECSSEE-EEE-ETTEEEEEECCTTSTTCCCGGGSSSEEEEEEET--TEEEE-EE-TTEEEEEECCTTSTTSCCG
T ss_pred CEEEEEeCCCEE-EEE-ECCEEEEeeCCCCCCCCCCcccCCCeEEEECcC--CEEEE-Ee-CCeEEEecCCCCCcCCCCc
Confidence 466666654433 333 488999887654322211111124677777764 33344 45 9999999765422121111
Q ss_pred ccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEE
Q 001248 900 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFE 979 (1114)
Q Consensus 900 ~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd 979 (1114)
.....|..|+...+. .++ -. ||.|..|-......... +... ...|..++...+... +. .|+.|..|-
T Consensus 138 ~~~~~i~~i~~G~~~-~~~-l~-~G~v~~wG~n~~gqlg~-p~~~-------~~~v~~i~~G~~hs~-al-~~G~v~~wG 204 (282)
T 3qhy_B 138 EAQSGVTALDGGVYT-ALA-VK-NGGVIAWGDNYFGQTTV-PAEA-------QSGVDDVAGGIFHSL-AL-KDGKVIAWG 204 (282)
T ss_dssp GGGSSEEEEEECSSE-EEE-EE-TTEEEEEECCTTSTTSC-CGGG-------GSSEEEEEECSSEEE-EE-ETTEEEEEE
T ss_pred cCCCCeEEEEcccCE-EEE-EE-CCEEEEecCCCCCCCCC-ceec-------CCCeEEEEecCCEEE-EE-ECCeEEEEE
Confidence 233557777765432 233 34 79999997765322211 1111 124556655444443 34 699999997
Q ss_pred cCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCC
Q 001248 980 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1027 (1114)
Q Consensus 980 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~ 1027 (1114)
......+.... .....|..++-..+...++ . ||.|+.|=....
T Consensus 205 ~n~~gqlg~p~--~~~~~v~~i~~G~~h~~al-~--~g~v~~wG~n~~ 247 (282)
T 3qhy_B 205 DNRYKQTTVPT--EALSGVSAIASGEWYSLAL-K--NGKVIAWGSSRT 247 (282)
T ss_dssp CCTTSTTCCCG--GGGSSCCEEEECSSCEEEE-E--TTEEEEESTTCC
T ss_pred CCCCCCCCCCc--ccCCCceEEEcCCCEEEEE-E--CCEEEEecCCCC
Confidence 65433322111 1134577777654443333 3 999999976654
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=89.21 E-value=11 Score=40.44 Aligned_cols=172 Identities=12% Similarity=0.154 Sum_probs=92.7
Q ss_pred eEEEEEcCCC--ccccccCC------CCCCeEEEEEe---cC---CCcEEEEEe-CCCcEEEEEcccceEEEeec-----
Q 001248 840 KISLFNMMTF--KTMATFMP------PPPAATFLAFH---PQ---DNNIIAIGM-DDSSIQIYNVRVDEVKSKLK----- 899 (1114)
Q Consensus 840 ~i~iwd~~~~--~~~~~~~~------~~~~i~~l~~s---p~---d~~~la~g~-~dg~v~iwd~~~~~~~~~l~----- 899 (1114)
+|.+||+.+. +.++++.- .......+++. |. ++.++..+. ..+.|.|||+.+++..+.+.
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 4666777766 65554422 23457788887 21 134444444 46789999999887554442
Q ss_pred ---------cc----ccCeeEEEEcCC----CCEEEEEeCCCcEEEEeCCCCccccccc---cccCCCCCCCCCCceEEE
Q 001248 900 ---------GH----SKRITGLAFSHA----LNVLVSSGADSQLCVWSSDGWEKQKNRF---LQIPTGRTPTAQSDTRVQ 959 (1114)
Q Consensus 900 ---------~h----~~~V~~l~~s~d----~~~l~s~s~D~~v~iwd~~~~~~~~~~~---~~~~~~~~~~~~~i~~v~ 959 (1114)
|. ...|.+|++||+ +++|.-..-.+ -++|.+.+.-...... ++.. |.......-..++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~~ 281 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIALA 281 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEe-eecCCCCCcceEE
Confidence 11 136888999998 77877666555 3556554321111100 0000 0010001123456
Q ss_pred Ec-cCCcEEEE-EeCCeEEEEEcCC-C---ceeeeeecCCCCcCeeEEEECCCCCEEEEE
Q 001248 960 FH-QDQIHFLV-VHETQLAIFETTK-L---ECVKQWVPRESSAPITHATFSCDSQLVYAC 1013 (1114)
Q Consensus 960 fs-pdg~~l~~-~~d~~i~iwd~~~-~---~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~ 1013 (1114)
+. .+|.++++ .....|..|+..+ . +....+..+..-..+..+.+.++|.+.+.+
T Consensus 282 ~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 282 YDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp ECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred EeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 65 56776666 4778899999875 1 122222222223356677776666544444
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.06 E-value=0.67 Score=49.28 Aligned_cols=125 Identities=9% Similarity=0.047 Sum_probs=70.6
Q ss_pred EEEEecCCCCEEEEeCCCCcceeEeecc-ccCEEEEeeccC-CCceEEEEE-ecCCeEEEEEcCCCCCeeeecCCCC-ee
Q 001248 481 CVITCGDDKTIKVWDATNGAKQYIFEGH-EAPVYSVCPHHK-ENIQFIFST-ALDGKIKAWLYDNLGSRVDYEAPGR-WC 556 (1114)
Q Consensus 481 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h-~~~v~~~~~~~~-~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~~~~-~v 556 (1114)
+++.++.||.|.-.|..+|+.+.++... ..++....-... .++..++.. +.||.|..++..++.....+..... ..
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~ 91 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST 91 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence 5788899999999999999999888754 123322211011 132333333 5799999998876533322211100 00
Q ss_pred EEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccC
Q 001248 557 TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD 615 (1114)
Q Consensus 557 ~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 615 (1114)
..+.. ++.-++ .-.--...+..+++|+.+|.+...|+.+|+.+..+...
T Consensus 92 SP~~~--~~~pvv--------~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 92 SPLHL--KTNIVV--------NDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp CSEEE--ECC------------------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred ccccc--CCCcee--------ecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 00000 000000 00000002346889999999999999999999998754
|
| >3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=88.26 E-value=28 Score=36.63 Aligned_cols=159 Identities=8% Similarity=0.058 Sum_probs=92.9
Q ss_pred CCCCccEEEEee---CCCEEEEEe-CCeEEEEEcCCCccc-------cccCCCCCCeEEEEEecCCCcEEEEEeCCCcEE
Q 001248 817 PEEAVPCFALSK---NDSYVMSAS-GGKISLFNMMTFKTM-------ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQ 885 (1114)
Q Consensus 817 ~~~~v~~v~~s~---d~~~l~~~~-dg~i~iwd~~~~~~~-------~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~ 885 (1114)
....|.++..-+ +..+++..+ +|.++...+...... ..+.. ...+..+.... +...|+..+..|.+.
T Consensus 93 ~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~-~~d~ill~T~~G~~~ 170 (327)
T 3uc1_A 93 PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCS-AGDDLLLVSANGQSI 170 (327)
T ss_dssp TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEEC-TTCEEEEEETTSEEE
T ss_pred CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEec-CCCEEEEEECCCeEE
Confidence 345555554433 467888877 899999887653322 22332 34555555555 456777788999998
Q ss_pred EEEcc--c---------ceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccc-----ccccccCCCCC
Q 001248 886 IYNVR--V---------DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK-----NRFLQIPTGRT 949 (1114)
Q Consensus 886 iwd~~--~---------~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~-----~~~~~~~~~~~ 949 (1114)
.+... . |.....+. ....|.++...+++..|+.++..|.++.-.+....... ...+.....
T Consensus 171 rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~-- 247 (327)
T 3uc1_A 171 RFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRR-- 247 (327)
T ss_dssp EEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTT--
T ss_pred EEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCC--
Confidence 88776 2 11122232 24567777776677799999999999988876533211 111111110
Q ss_pred CCCCCceEEEE-ccCCcEEEEEeCCeEEEEEcCC
Q 001248 950 PTAQSDTRVQF-HQDQIHFLVVHETQLAIFETTK 982 (1114)
Q Consensus 950 ~~~~~i~~v~f-spdg~~l~~~~d~~i~iwd~~~ 982 (1114)
.+.+..+.. ..+...++++.+|.+..++...
T Consensus 248 --~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 248 --RGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp --TCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred --CCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 123333333 3444455557788877777543
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=84.65 E-value=15 Score=43.65 Aligned_cols=196 Identities=11% Similarity=0.055 Sum_probs=101.5
Q ss_pred CCcEEEEEeCC----CcEEEEEcccce--EEE-e-----ecccccCeeEEEEcCCCCEEEEEeCCC------cEEEEeCC
Q 001248 871 DNNIIAIGMDD----SSIQIYNVRVDE--VKS-K-----LKGHSKRITGLAFSHALNVLVSSGADS------QLCVWSSD 932 (1114)
Q Consensus 871 d~~~la~g~~d----g~v~iwd~~~~~--~~~-~-----l~~h~~~V~~l~~s~d~~~l~s~s~D~------~v~iwd~~ 932 (1114)
++.+++.|+.+ ..+.+||..+++ .+. . +......-..+.+..++++++.||.++ .+.+||..
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~ 476 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK 476 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCC
Confidence 67788888754 368889987753 222 2 111111122333322777888887543 47888888
Q ss_pred CCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCC--eEEEEEcCCCceeeeee---cCCCCcCeeEEEECCC
Q 001248 933 GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HET--QLAIFETTKLECVKQWV---PRESSAPITHATFSCD 1006 (1114)
Q Consensus 933 ~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~--~i~iwd~~~~~~~~~~~---~~~h~~~v~~l~~s~d 1006 (1114)
+.+ +..+..... ...-.+++.-.+++.++.| .++ .+.+||..+..-...-. .......-.++.+..+
T Consensus 477 t~~---W~~~~~~p~----~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~ 549 (695)
T 2zwa_A 477 TRE---WSMIKSLSH----TRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV 549 (695)
T ss_dssp TTE---EEECCCCSB----CCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT
T ss_pred CCc---EEECCCCCC----CcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC
Confidence 743 222211111 0111333443477777774 222 79999998875433221 0001112233555554
Q ss_pred -CCEEEEEEc--C-----CeEEEEEcCCCee-----eEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCC----
Q 001248 1007 -SQLVYACFL--D-----ATVCVFSAANLKL-----RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD---- 1069 (1114)
Q Consensus 1007 -g~~l~s~s~--D-----g~I~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~D---- 1069 (1114)
+++++.|+. + ..+.+||+.+..- -..+......+.. .+ +++... ++.+++.|+.+
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~--~~-----~~~~~~-~~~iyv~GG~~~~~~ 621 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRY--GS-----QIKYIT-PRKLLIVGGTSPSGL 621 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCB--SC-----EEEEEE-TTEEEEECCBCSSCC
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcc--cc-----eEEEeC-CCEEEEECCccCCCC
Confidence 666777765 2 3589999988872 1222110011111 11 222222 26778888743
Q ss_pred ----CcEEEEeccCCC
Q 001248 1070 ----GGVHVFEPLESE 1081 (1114)
Q Consensus 1070 ----g~v~vW~i~~~~ 1081 (1114)
..+.++|+.+.+
T Consensus 622 ~~~~~~v~~yd~~t~~ 637 (695)
T 2zwa_A 622 FDRTNSIISLDPLSET 637 (695)
T ss_dssp CCTTTSEEEEETTTTE
T ss_pred CCCCCeEEEEECCCCe
Confidence 468899988765
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=84.53 E-value=72 Score=37.75 Aligned_cols=235 Identities=12% Similarity=0.132 Sum_probs=122.3
Q ss_pred EEE-EeeCCCEEEEEe--C----CeEEEEEcCCCccccc-cCCCCC--------CeEEEEEecCCCcEEEEEe-------
Q 001248 823 CFA-LSKNDSYVMSAS--G----GKISLFNMMTFKTMAT-FMPPPP--------AATFLAFHPQDNNIIAIGM------- 879 (1114)
Q Consensus 823 ~v~-~s~d~~~l~~~~--d----g~i~iwd~~~~~~~~~-~~~~~~--------~i~~l~~sp~d~~~la~g~------- 879 (1114)
.+. ++||+++++.+- + ..++++|+.+++.+.. +. ... ....++|.. +..++++..
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~d-~~~~~~~~~~~~~~~~ 210 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWIN-KDTIIFNLVLHKNEIT 210 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEEE-TTEEEECCCCSTTCBC
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEEC-CCEEEEEeCCCCCCcC
Confidence 344 889999888662 2 3599999999877642 22 111 113447764 444444321
Q ss_pred ---CCCcEEEEEcccc--eEEEeecccccCe-eEEEEcCCCC-----EEEEEeCC---CcEEEEeCCCCccccccccccC
Q 001248 880 ---DDSSIQIYNVRVD--EVKSKLKGHSKRI-TGLAFSHALN-----VLVSSGAD---SQLCVWSSDGWEKQKNRFLQIP 945 (1114)
Q Consensus 880 ---~dg~v~iwd~~~~--~~~~~l~~h~~~V-~~l~~s~d~~-----~l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~ 945 (1114)
...+|+.|.+-+. +-...+.+....+ .+...+++++ .+++.+.+ ..+.+.+....... ...+...
T Consensus 211 ~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~ 289 (711)
T 4hvt_A 211 SSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINMP 289 (711)
T ss_dssp TTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCSC
T ss_pred cCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeecC
Confidence 1236888887653 1222333322222 3455667766 34554423 33455555431111 1112111
Q ss_pred CCCCCCCCCceEEEEccCCcEEEEE-----------eCCeEEEEEcCCCc-------eeeeeecCCCCcCeeEEEECCCC
Q 001248 946 TGRTPTAQSDTRVQFHQDQIHFLVV-----------HETQLAIFETTKLE-------CVKQWVPRESSAPITHATFSCDS 1007 (1114)
Q Consensus 946 ~~~~~~~~~i~~v~fspdg~~l~~~-----------~d~~i~iwd~~~~~-------~~~~~~~~~h~~~v~~l~~s~dg 1007 (1114)
. -..+..+.++.+++.. ..+.|.+.++.++. ....+........+..+.+..+
T Consensus 290 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 360 (711)
T 4hvt_A 290 S--------DATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD- 360 (711)
T ss_dssp T--------TCEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-
T ss_pred C--------cceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-
Confidence 1 1223455667666632 35678899987642 2223233334567888999876
Q ss_pred CEEEEEEcCCe--EEEEEcCCCe-eeEE-eCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCC---CcEEEEecc
Q 001248 1008 QLVYACFLDAT--VCVFSAANLK-LRCR-INPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD---GGVHVFEPL 1078 (1114)
Q Consensus 1008 ~~l~s~s~Dg~--I~vwd~~~~~-~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~D---g~v~vW~i~ 1078 (1114)
.++++...++. ++++++.+++ .... +. ++.. ..+. .....++.+.++++.++. +.++.+++.
T Consensus 361 ~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~----lp~~---~~~~--~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 361 RVFLATYDNVVAKVVTFTLENEQWTKPVVLK----LPYQ---NAIF--GMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp CEEEEEEETTEEEEEEECEETTEECCCEEEC----CCST---TCEE--EEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEEEEECCEEEEEEEECCCCceEEEeccC----CCCC---eEEE--EEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 56777777775 6777777775 2222 33 2211 1122 233445344555554433 577777766
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=84.08 E-value=17 Score=40.49 Aligned_cols=113 Identities=11% Similarity=0.048 Sum_probs=61.1
Q ss_pred cCeeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCccccccccccCCCCC-----CCCCCceEEEEccC----CcEEEE-Ee
Q 001248 903 KRITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT-----PTAQSDTRVQFHQD----QIHFLV-VH 971 (1114)
Q Consensus 903 ~~V~~l~~s~d~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~-----~~~~~i~~v~fspd----g~~l~~-~~ 971 (1114)
..-++|+|.|||. .|+++...|.|++++.+.... ......+..... ........|+|+|+ +.+.++ +.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~-~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIF-KEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBC-SSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCee-eeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 3457899999996 455567889999997543211 111111111000 01246788999997 444333 42
Q ss_pred C------------CeEEEEEcCCC----------ceeeeeecCCCCcCeeEEEECCCCCEEEEEEcC
Q 001248 972 E------------TQLAIFETTKL----------ECVKQWVPRESSAPITHATFSCDSQLVYACFLD 1016 (1114)
Q Consensus 972 d------------~~i~iwd~~~~----------~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D 1016 (1114)
+ ..|.-|.+..+ +.+..+...........|+|.|||.+.++.+..
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 1 13444655421 122222211212346789999999876666543
|
| >3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=81.80 E-value=49 Score=33.77 Aligned_cols=113 Identities=15% Similarity=0.160 Sum_probs=73.7
Q ss_pred CCCCccEEEEee--CCCEEEEEe-CCeEEEEEcCCCc------cccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 001248 817 PEEAVPCFALSK--NDSYVMSAS-GGKISLFNMMTFK------TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY 887 (1114)
Q Consensus 817 ~~~~v~~v~~s~--d~~~l~~~~-dg~i~iwd~~~~~------~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iw 887 (1114)
....|..+.. . +..+++..+ +|.++...+.... ....+. ....+..+.... +...|+..+.+|.++.+
T Consensus 66 ~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lk-egD~l~~~~~~~-~~~~ill~T~~G~~~r~ 142 (276)
T 3no0_A 66 REEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLT-EGDEVVSIASSV-DETHILLFTKKGRVARF 142 (276)
T ss_dssp TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCC-TTCCEEEEEECC-SSCEEEEEETTSEEEEE
T ss_pred CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecC-CCCEEEEEEEeC-CCCEEEEEECCCEEEEE
Confidence 3555666644 4 466777777 8999999876543 111222 234566655555 55678888899999988
Q ss_pred Eccc---------ceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001248 888 NVRV---------DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 933 (1114)
Q Consensus 888 d~~~---------~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~ 933 (1114)
.... |.....+.. ...|.++...+++..++..+..|.++...+..
T Consensus 143 ~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e 196 (276)
T 3no0_A 143 SVREVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPYLLVITAKGRVKKISHEE 196 (276)
T ss_dssp EGGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSEEEEEETTSCEEEEEGGG
T ss_pred EhhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHH
Confidence 8653 222223332 35677766666677899999999999988765
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=80.97 E-value=5.8 Score=49.18 Aligned_cols=81 Identities=15% Similarity=0.081 Sum_probs=52.2
Q ss_pred cCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEE---eCCCcE
Q 001248 996 APITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG---LSDGGV 1072 (1114)
Q Consensus 996 ~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~---~~Dg~v 1072 (1114)
..+.+++..++..++++.+.|+++|+|++.+++++.........+... . .. .....+..+.++.+- ..+|..
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~~~~~~~~--~-~~--~~~~~~~~~~~i~v~~s~~~~g~F 310 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQTILPLQ--S-FP--YLTSDHTTNSFIALYYPDNSHGSF 310 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECCCCCCCSC--C-CC--CEEECSSSTTEEEEEECCSSSCEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecccccCCccc--c-cc--ccccCCCcccEEEEEEcCCCCcEE
Confidence 356778888899999999999999999999999998765433222211 1 11 122233334444432 346788
Q ss_pred EEEeccCCC
Q 001248 1073 HVFEPLESE 1081 (1114)
Q Consensus 1073 ~vW~i~~~~ 1081 (1114)
++|.+....
T Consensus 311 ~~~~~~~~~ 319 (950)
T 4gq2_M 311 SIYKLNANA 319 (950)
T ss_dssp EEEEEEEC-
T ss_pred EEEEEecCC
Confidence 888876544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1114 | ||||
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 5e-18 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-13 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-09 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-09 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 8e-09 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-08 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-05 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-17 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-15 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 8e-15 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-12 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 8e-10 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-14 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-12 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-08 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-08 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 6e-08 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-05 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-13 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 8e-12 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-06 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 6e-06 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-04 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 5e-11 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 5e-10 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-07 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 6e-05 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 7e-04 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 4e-10 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 4e-07 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-06 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 9e-06 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 4e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 6e-10 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 5e-08 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 7e-07 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-09 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-06 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-06 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-04 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 0.003 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-09 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 9e-08 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 5e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.004 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 5e-09 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 8e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-08 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 6e-08 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 4e-07 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-06 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-08 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-07 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-06 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 6e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.004 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 7e-08 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 7e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-05 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-04 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 7e-04 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 9e-08 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-07 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 4e-07 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 1e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.001 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 3e-07 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 5e-05 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-07 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-04 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.001 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.004 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 8e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-04 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-04 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 4e-04 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 7e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 6e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-04 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 3e-06 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 5e-05 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 3e-05 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 5e-05 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 3e-04 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 5e-04 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 1e-04 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 5e-04 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 6e-04 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 0.001 | |
| d1qnia2 | 441 | b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter | 0.002 |
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 85.2 bits (209), Expect = 5e-18
Identities = 55/376 (14%), Positives = 106/376 (28%), Gaps = 62/376 (16%)
Query: 317 INLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLV 376
++L +P + ++ + + P ++ + ++L+ S + F L
Sbjct: 21 LDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSN-DGEYLAT 79
Query: 377 GTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436
G N ++ V S LV R L + + + V +SPDG
Sbjct: 80 GCN-KTTQVYRV-SDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 137
Query: 437 VAYSRHIVQIYSYHGG-------------------------------------DEVRQHL 459
+++I+ D
Sbjct: 138 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC 197
Query: 460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-------AKQYIFEGHEAPV 512
+ + P + D+ ++VWD+ G ++ GH+ V
Sbjct: 198 SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSV 257
Query: 513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF 572
YSV Q + S +LD +K W N ++ D + P + Y
Sbjct: 258 YSVVFTRDG--QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS-- 313
Query: 573 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG----LPASPRIRFNK 628
V L+ D + FWD S L + + +
Sbjct: 314 -------VATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP 366
Query: 629 DGCLLAVSTNDNGIKI 644
+ + A + D +I
Sbjct: 367 EYNVFATGSGDCKARI 382
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 71.8 bits (174), Expect = 1e-13
Identities = 26/195 (13%), Positives = 63/195 (32%), Gaps = 31/195 (15%)
Query: 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD 418
++ P + G+ + +W+ + G L +
Sbjct: 205 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET--------------GFLVERLDSENESG 250
Query: 419 PGV--SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV---------GG 467
G SV V+++ DG V++++ + ++
Sbjct: 251 TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF 310
Query: 468 VNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI---- 523
V +A + ++ +++ D+ + WD +G + +GH V SV + ++
Sbjct: 311 VLSVATTQNDE--YILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEY 368
Query: 524 QFIFSTALDGKIKAW 538
+ + D K + W
Sbjct: 369 NVFATGSGDCKARIW 383
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.4 bits (142), Expect = 1e-09
Identities = 19/132 (14%), Positives = 45/132 (34%), Gaps = 20/132 (15%)
Query: 818 EEAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTMATFMPPPPAA------------TF 864
+++V +++ V+S S + L+N+ + P
Sbjct: 254 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 313
Query: 865 LAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL------NVLV 918
+A ++ I G D + ++ + L+GH + +A ++ NV
Sbjct: 314 VATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFA 372
Query: 919 SSGADSQLCVWS 930
+ D + +W
Sbjct: 373 TGSGDCKARIWK 384
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.3 bits (139), Expect = 2e-09
Identities = 32/255 (12%), Positives = 72/255 (28%), Gaps = 17/255 (6%)
Query: 786 NSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFN 845
+ GK A+ A I V E + + G ++
Sbjct: 130 SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI 189
Query: 846 M-MTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV-------RVDEVKSK 897
+ + + T +A P D IA G D ++++++ R+D
Sbjct: 190 WDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES 249
Query: 898 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD-- 955
GH + + F+ +VS D + +W+ + + T
Sbjct: 250 GTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD 309
Query: 956 --TRVQFHQDQIHFLVVHET-QLAIFETTKLECVKQWVPRESS----APITHATFSCDSQ 1008
V Q+ + L + + ++ + +S A ++ +
Sbjct: 310 FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYN 369
Query: 1009 LVYACFLDATVCVFS 1023
+ D ++
Sbjct: 370 VFATGSGDCKARIWK 384
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.7 bits (135), Expect = 8e-09
Identities = 22/194 (11%), Positives = 56/194 (28%), Gaps = 31/194 (15%)
Query: 427 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVR----QHLEIDAHVGGVNDIAFSHPNKQLCV 482
+ DG V+++ G V ++ H V + F+ + +
Sbjct: 212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSV-- 269
Query: 483 ITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI----------QFIFSTALD 532
++ D+++K+W+ N + + + V ++ ++I S + D
Sbjct: 270 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD 329
Query: 533 GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 592
+ W + + + ++A + N F
Sbjct: 330 RGVLFWDKKSGNPLLMLQGHRNSVISVAVANG---------------SSLGPEYNVFATG 374
Query: 593 GDDFSIKFWDMDSV 606
D + W +
Sbjct: 375 SGDCKARIWKYKKI 388
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.8 bits (130), Expect = 3e-08
Identities = 17/142 (11%), Positives = 36/142 (25%), Gaps = 17/142 (11%)
Query: 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD 418
S S+ F ++ G+ + LW + + +
Sbjct: 255 DSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY-------IG 306
Query: 419 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS---- 474
V V + + V + G+ + + H V +A +
Sbjct: 307 HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL---MLQGHRNSVISVAVANGSS 363
Query: 475 -HPNKQLCVITCGDDKTIKVWD 495
P + T D ++W
Sbjct: 364 LGPEYNV-FATGSGDCKARIWK 384
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.2 bits (105), Expect = 4e-05
Identities = 48/333 (14%), Positives = 104/333 (31%), Gaps = 67/333 (20%)
Query: 464 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG---------------- 507
H V + FS+ + L G +KT +V+ ++G+
Sbjct: 61 HTSVVCCVKFSNDGEYLA---TGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSS 117
Query: 508 --HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG 565
+ + SVC + +F+ + A D I+ W +N + + + ++ Y G
Sbjct: 118 PSSDLYIRSVCFSP--DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG 175
Query: 566 TRTYQGFRKRSL---------------------GVVQFDTTKNRFLAAGDDFSIKFWDMD 604
+ G R++ V A D +++ WD +
Sbjct: 176 DKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE 235
Query: 605 SVQLLTSIDADGGLPASPR-----IRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN 659
+ L+ +D++ + + F +DG + + D +K+ + +
Sbjct: 236 TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 295
Query: 660 LAYDASRTSENSKPTISPISAAAAAAATSAGLADR---------AASMVSIPGMNGDVRS 710
+ T K + ++ +G DR ++ + G V S
Sbjct: 296 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVIS 355
Query: 711 LADVK--------PRITEESNDKS-KVWKLTEL 734
+A S D ++WK ++
Sbjct: 356 VAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 81.7 bits (200), Expect = 5e-17
Identities = 27/141 (19%), Positives = 54/141 (38%), Gaps = 12/141 (8%)
Query: 400 KVWDL--GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ 457
K+WD+ G C +N + + P+G+ F +++ E+
Sbjct: 209 KLWDVREGMCRQTF-----TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263
Query: 458 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 517
+ D + G+ ++FS + L + DD VWDA + + GH+ V +
Sbjct: 264 Y-SHDNIICGITSVSFSKSGRLL--LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV 320
Query: 518 HHKENIQFIFSTALDGKIKAW 538
+ + + + D +K W
Sbjct: 321 TD--DGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 77.5 bits (189), Expect = 1e-15
Identities = 27/163 (16%), Positives = 54/163 (33%), Gaps = 9/163 (5%)
Query: 771 SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 830
+ + L T SG AS +LW G+ T + E + N
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASA--KLWDVREGMCRQ---TFTGHESDINAICFFPNG 238
Query: 831 SYVMSASGG---KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY 887
+ + S ++ + T ++F ++ G DD + ++
Sbjct: 239 NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVW 297
Query: 888 NVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
+ + L GH R++ L + + + DS L +W+
Sbjct: 298 DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 74.8 bits (182), Expect = 8e-15
Identities = 50/332 (15%), Positives = 98/332 (29%), Gaps = 49/332 (14%)
Query: 338 SQAFSTPEDLPKT---VTRTLNQGSSP-MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRER 393
SQ + + + + RTL + +M + LL+ + G + +W+ + +
Sbjct: 31 SQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNK 89
Query: 394 LVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD 453
+ + + C+ V G+ I++ V SR + Y
Sbjct: 90 VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC 149
Query: 454 EVRQHLEIDAHVGGVNDIAFSHPNKQLCV---------------------ITCGDDKTIK 492
+I G + Q ++ D + K
Sbjct: 150 RFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 493 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP 552
+WD G + F GHE+ + ++C N + + D + + + Y
Sbjct: 210 LWDVREGMCRQTFTGHESDINAICFFPNGN--AFATGSDDATCRLFDLRADQELMTYSHD 267
Query: 553 GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI 612
C + V F + LA DDF+ WD +
Sbjct: 268 NIICGITS-------------------VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL 308
Query: 613 DADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 644
+ + DG +A + D+ +KI
Sbjct: 309 AGHDNRVSC--LGVTDDGMAVATGSWDSFLKI 338
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 66.3 bits (160), Expect = 4e-12
Identities = 20/158 (12%), Positives = 49/158 (31%), Gaps = 9/158 (5%)
Query: 867 FHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQL 926
D + G D+S ++++VR + GH I + F N + D+
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 927 CVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET-QLAIFETTKLEC 985
++ ++ T V F + L ++ +++ K +
Sbjct: 251 RLFDLRADQELMTYSHDNIICGI------TSVSFSKSGRLLLAGYDDFNCNVWDALKADR 304
Query: 986 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1023
++ + D V D+ + +++
Sbjct: 305 AGVL--AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 59.4 bits (142), Expect = 8e-10
Identities = 22/181 (12%), Positives = 44/181 (24%), Gaps = 26/181 (14%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
V + +PD LF +++ G + H +N I F
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ---TFTGHESDINAICFFPNGNAF- 241
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
T DD T +++D + + ++ + + + D W
Sbjct: 242 -ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
+ + + DG D +K W
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDG---------------------MAVATGSWDSFLKIW 339
Query: 602 D 602
+
Sbjct: 340 N 340
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 74.0 bits (180), Expect = 1e-14
Identities = 41/307 (13%), Positives = 101/307 (32%), Gaps = 14/307 (4%)
Query: 624 IRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAA 683
+ F+ ++ ++ D IK+ G RT + + S + + +++ +A
Sbjct: 23 VIFHPVFSVMVSASEDATIKVWDYETG-DFERTLK--GHTDSVQDISFDHSGKLLASCSA 79
Query: 684 AAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSL 743
+ ++ G + +V S++ + S + K K+ E+ ++
Sbjct: 80 DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF 139
Query: 744 RLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP 803
G I + +++ +W E + + V +
Sbjct: 140 TGHREWVRMVR----PNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECIS--- 192
Query: 804 SGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTMATFMPPPPAA 862
+ + + K +++S S I ++++ T + T +
Sbjct: 193 --WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWV 250
Query: 863 TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA 922
+ FH I DD ++++++ + L H +T L F +V+
Sbjct: 251 RGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 309
Query: 923 DSQLCVW 929
D + VW
Sbjct: 310 DQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 67.5 bits (163), Expect = 2e-12
Identities = 26/209 (12%), Positives = 64/209 (30%), Gaps = 23/209 (11%)
Query: 461 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHK 520
+ H V + F + ++ +D TIKVWD G + +GH V + H
Sbjct: 13 LSGHRSPVTRVIFHPVFSVM--VSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 70
Query: 521 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM--------AYSADGTRTYQGF 572
+ S + K+ + + ++ + S D T
Sbjct: 71 GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130
Query: 573 R-----------KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPAS 621
+ + + +V+ + + +D +++ W + + + + +
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVEC 190
Query: 622 PRIRFNKDGCLLAVSTNDNGIKILATSDG 650
I + + ++S + G
Sbjct: 191 --ISWAPESSYSSISEATGSETKKSGKPG 217
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 55.5 bits (132), Expect = 1e-08
Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
V V++ G ++++ Y ++ ++AH V + F +
Sbjct: 249 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK---TLNAHEHFVTSLDFHKTAPYV- 304
Query: 482 VITCGDDKTIKVWD 495
+T D+T+KVW+
Sbjct: 305 -VTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 54.0 bits (128), Expect = 4e-08
Identities = 47/241 (19%), Positives = 76/241 (31%), Gaps = 17/241 (7%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
V RVI+ P S+ A ++++ Y GD R + H V DI+F H K L
Sbjct: 19 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGKLLA 75
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
+ + + + H S+ P+ I S + D IK W
Sbjct: 76 SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG----DHIVSASRDKTIKMWEVQ 131
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---FSI 598
+ W + + DGT +++ V T + + I
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191
Query: 599 KFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE 658
+ S ++ S + K G L + D IK+ S G L T
Sbjct: 192 SWAPESSYSSISEAT------GSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-MCLMTLV 244
Query: 659 N 659
Sbjct: 245 G 245
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 53.6 bits (127), Expect = 6e-08
Identities = 20/137 (14%), Positives = 44/137 (32%), Gaps = 20/137 (14%)
Query: 822 PCFALSKNDSYVMSASG-GKISLFNMMTFKTMATFMPPPPAATFLAFHPQ---------- 870
+++ + + S S + ++ + T + A +++ P+
Sbjct: 147 RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT 206
Query: 871 ---------DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG 921
+ G D +I++++V L GH + G+ F ++S
Sbjct: 207 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA 266
Query: 922 ADSQLCVWSSDGWEKQK 938
D L VW K
Sbjct: 267 DDKTLRVWDYKNKRCMK 283
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.1 bits (105), Expect = 3e-05
Identities = 29/172 (16%), Positives = 66/172 (38%), Gaps = 10/172 (5%)
Query: 863 TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA 922
T + FHP +++ +D++I++++ + + LKGH+ + ++F H+ +L S A
Sbjct: 21 TRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA 79
Query: 923 DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTK 982
D + +W G+E + + + + + + + E Q
Sbjct: 80 DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ-------- 131
Query: 983 LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034
+ + D L+ +C D TV V+ A + + +
Sbjct: 132 -TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR 182
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.2 bits (100), Expect = 1e-04
Identities = 22/161 (13%), Positives = 48/161 (29%), Gaps = 9/161 (5%)
Query: 895 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQS 954
K L GH +T + F +V+VS+ D+ + VW + F + G T + Q
Sbjct: 10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYE-----TGDFERTLKGHTDSVQD 64
Query: 955 DTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF 1014
+ + +L F+ ++ + + + +
Sbjct: 65 ISFDHSGKLLASCSADMTIKLWDFQG----FECIRTMHGHDHNVSSVSIMPNGDHIVSAS 120
Query: 1015 LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAA 1055
D T+ ++ V + L+ +
Sbjct: 121 RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASC 161
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 69.9 bits (169), Expect = 4e-13
Identities = 31/178 (17%), Positives = 67/178 (37%), Gaps = 6/178 (3%)
Query: 863 TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK--SKLKGHSKRITGLAFSHALNVLVSS 920
+ A++ D IAI ++ + IY ++ +LK H+ ++TG+ ++ N +V+
Sbjct: 11 SCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Query: 921 GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFET 980
G D VW+ G + + + + + FE
Sbjct: 70 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS---RVISICYFEQ 126
Query: 981 TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAY 1038
V + + + + + + +S L+ A D +FSA ++ R P+ +
Sbjct: 127 ENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW 184
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 66.0 bits (159), Expect = 8e-12
Identities = 25/155 (16%), Positives = 50/155 (32%), Gaps = 3/155 (1%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
++ W+ D + + + H V IY G V+ H E+ H G V + ++ + ++
Sbjct: 9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVH-ELKEHNGQVTGVDWAPDSNRI- 66
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
+TCG D+ VW + + C N + + I ++
Sbjct: 67 -VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 576
+ + + S D S
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 160
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 48.3 bits (113), Expect = 3e-06
Identities = 22/368 (5%), Positives = 77/368 (20%), Gaps = 26/368 (7%)
Query: 580 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 639
++ + + ++ + ++ + + + + + D + D
Sbjct: 13 HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD 72
Query: 640 NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMV 699
+ A+R + + + + V
Sbjct: 73 RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWV 132
Query: 700 SIPGMNGDVRSLADVKPRITEE------SNDKSKVWKLTELSEPNQCRSLRLPENLRATK 753
++ + + K +++ + +
Sbjct: 133 CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMP-FG 191
Query: 754 ISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 813
++S + + +A W + L + + +
Sbjct: 192 ELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTV----------CLADADKKMAVATLAS 241
Query: 814 DSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN 873
++ P + S V + LF + +F +
Sbjct: 242 ETLP---LLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSS-QRGLTA 297
Query: 874 IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH----ALNVLVSSGADSQLCVW 929
D H ++ ++ + ++G D + +W
Sbjct: 298 RERFQNLDKKASSEG-SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIW 356
Query: 930 SSDGWEKQ 937
E
Sbjct: 357 DVRSLESA 364
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.5 bits (111), Expect = 6e-06
Identities = 32/247 (12%), Positives = 65/247 (26%), Gaps = 27/247 (10%)
Query: 361 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 420
+ LL G+ ++ +E W L G
Sbjct: 143 TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG 202
Query: 421 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 480
V+ V +S +GS V + V + + + F +
Sbjct: 203 -WVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL---ASETLPLLAVTFITESS-- 256
Query: 481 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 540
++ G D ++ + A + F G + LD K +
Sbjct: 257 -LVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQS--SQRGLTARERFQNLDKKASSEGS 313
Query: 541 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF 600
G+ +D + ++ + G ++F G D +
Sbjct: 314 AAAGAGLD-SLHKNSVSQISVLSGG-----------------KAKCSQFCTTGMDGGMSI 355
Query: 601 WDMDSVQ 607
WD+ S++
Sbjct: 356 WDVRSLE 362
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.2 bits (97), Expect = 3e-04
Identities = 11/53 (20%), Positives = 16/53 (30%), Gaps = 2/53 (3%)
Query: 452 GDEVRQHLEIDAHVGGVNDIAFSHPNKQLC--VITCGDDKTIKVWDATNGAKQ 502
G H V+ I+ K C T G D + +WD +
Sbjct: 312 GSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 364
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.3 bits (152), Expect = 5e-11
Identities = 29/197 (14%), Positives = 50/197 (25%), Gaps = 20/197 (10%)
Query: 461 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHK 520
+ H V ++ ++ DD T+KVW A G GH V+S
Sbjct: 12 LKGHDDHVIT-CLQFCGNRI--VSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN 68
Query: 521 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT-------------R 567
I L G+ +
Sbjct: 69 IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQ 128
Query: 568 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN 627
V R ++ DF +K WD ++ L ++ +
Sbjct: 129 CLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGH----TNRVYSLQ 184
Query: 628 KDGCLLAVSTNDNGIKI 644
DG + + D I++
Sbjct: 185 FDGIHVVSGSLDTSIRV 201
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.8 bits (143), Expect = 5e-10
Identities = 44/321 (13%), Positives = 93/321 (28%), Gaps = 44/321 (13%)
Query: 327 SFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLW 386
+ GH+ SQ T + T + ++ + +
Sbjct: 52 TLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVV 111
Query: 387 EVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQI 446
L + + + M AA+ V + D + V +
Sbjct: 112 SGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVK-VWDPETETCL 170
Query: 447 YSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 506
++ G L+ D V++ D +I+VWD G +
Sbjct: 171 HTLQGHTNRVYSLQFDGI----------------HVVSGSLDTSIRVWDVETGNCIHTLT 214
Query: 507 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT 566
GH++ + + S D +K W + P + + +
Sbjct: 215 GHQSLTSGMELKDN----ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC----- 265
Query: 567 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS---VQLLTSIDADGGLPASPR 623
KN + + DD ++K WD+ + ++ L ++++ G R
Sbjct: 266 ---------------LQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWR 310
Query: 624 IRFNKDGCLLAVSTNDNGIKI 644
IR + + AV + + +
Sbjct: 311 IRASNTKLVCAVGSRNGTEET 331
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.1 bits (123), Expect = 2e-07
Identities = 25/152 (16%), Positives = 49/152 (32%), Gaps = 18/152 (11%)
Query: 397 RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR 456
+ +VWD+ + + G ++ + V+I+ G ++
Sbjct: 197 TSIRVWDVETGNC-----IHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQ 251
Query: 457 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-----EGHEAP 511
+ H V + F+ VIT DD T+K+WD G G
Sbjct: 252 TLQGPNKHQSAVTCLQFNKN----FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGV 307
Query: 512 VYSVCPHHKENIQFIFSTALDG--KIKAWLYD 541
V+ + + + +G + K + D
Sbjct: 308 VWRIRASN--TKLVCAVGSRNGTEETKLLVLD 337
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.0 bits (102), Expect = 6e-05
Identities = 17/129 (13%), Positives = 47/129 (36%), Gaps = 10/129 (7%)
Query: 813 TDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDN 872
T + + L ++ V + + ++++ T + + T P + + +
Sbjct: 212 TLTGHQSLTSGMELK-DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK 270
Query: 873 NIIAIGMDDSSIQIYNVRVDEVKSKLK-----GHSKRITGLAFSHALNVLVSSGAD---- 923
N + DD ++++++++ E L G + + S+ V +
Sbjct: 271 NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEE 330
Query: 924 SQLCVWSSD 932
++L V D
Sbjct: 331 TKLLVLDFD 339
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.6 bits (93), Expect = 7e-04
Identities = 25/210 (11%), Positives = 57/210 (27%), Gaps = 29/210 (13%)
Query: 866 AFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ 925
N I G DD+++++++ + L GH+ + D+
Sbjct: 22 CLQF-CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR-----------DNI 69
Query: 926 LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC 985
+ S+D K N S R ++ + L +++ +C
Sbjct: 70 IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQC 129
Query: 986 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSS 1045
+ + ++ V + D V V+ +
Sbjct: 130 LHVLMGHVAAVRCVQYDGRR----VVSGAYDFMVKVWDPETETCLHTLQG---------- 175
Query: 1046 SNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1075
H + + + G D + V+
Sbjct: 176 ---HTNRVYSLQFDGIHVVSGSLDTSIRVW 202
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.6 bits (145), Expect = 4e-10
Identities = 25/205 (12%), Positives = 55/205 (26%), Gaps = 26/205 (12%)
Query: 462 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-----------GHEA 510
AH + ++ + ++C D +KVWD + + H
Sbjct: 11 KAHDADIFSVSACNSF----TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66
Query: 511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 570
V + + +T+ G + + D + +D +
Sbjct: 67 DVLQAIERDAFELCLVATTSFSGDLLFYRITRE----DETKKVIFEKLDLLDSDMKKH-- 120
Query: 571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM-----DSVQLLTSIDADGGLPASPRIR 625
F G +R +A + W +S L + L +
Sbjct: 121 SFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESP 180
Query: 626 FNKDGCLLAVSTNDNGIKILATSDG 650
+V ++ G+ ++G
Sbjct: 181 MTPSQFATSVDISERGLIATGFNNG 205
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.4 bits (121), Expect = 4e-07
Identities = 52/447 (11%), Positives = 115/447 (25%), Gaps = 68/447 (15%)
Query: 501 KQYI-----FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW 555
K +I + H+A ++SV + F S + DG +K W L + +
Sbjct: 1 KVFIATANAGKAHDADIFSVSACNS----FTVSCSGDGYLKVWDNKLLDNENPKDKSYSH 56
Query: 556 CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA-AGDDFSIKFWDMDSV-QLLTSID 613
L ++ D + +A + F+ + + I
Sbjct: 57 F---------VHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIF 107
Query: 614 ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT--SDGIRLLRTFENLAYDASRTSENS 671
L S + + S + L G + F A +++ + N
Sbjct: 108 EKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW 167
Query: 672 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLA-DVKPRITEESNDKSKVWK 730
PT+ + ++ S + S+ + I N+ +
Sbjct: 168 SPTL-----------------ELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQIS 210
Query: 731 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGK 790
P + + I + F+ G+ + + TE
Sbjct: 211 ELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIG 270
Query: 791 ATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFK 850
+ + ++ V ++ + GK+ +++ T +
Sbjct: 271 SLSVPTHSSQASLGEFAHSSWVM--------SLSFNDSGETLCSAGWDGKLRFWDVKTKE 322
Query: 851 TMATFM----PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT 906
+ T LA +++ G+ D +K K
Sbjct: 323 RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD----------------VKFLKKGWR 366
Query: 907 GLAFSHALNVLVSSGADSQLCVWSSDG 933
+ L D + + G
Sbjct: 367 SGMGADLNESLCCVCLDRSIRWFREAG 393
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.9 bits (117), Expect = 1e-06
Identities = 25/189 (13%), Positives = 54/189 (28%), Gaps = 4/189 (2%)
Query: 328 FTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWE 387
S+S + +S +L TV + S+D + L+ G N G + + E
Sbjct: 154 HPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RGLIATGFNNGTVQISE 211
Query: 388 VGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIY 447
+ + L + + + + + G +
Sbjct: 212 LSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGS 271
Query: 448 SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG 507
+ L AH V ++F+ + + + G D ++ WD +
Sbjct: 272 LSVPTHSSQASLGEFAHSSWVMSLSFNDSGE--TLCSAGWDGKLRFWDVKTKERITTLNM 329
Query: 508 HEAPVYSVC 516
H +
Sbjct: 330 HCDDIEIEE 338
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.2 bits (110), Expect = 9e-06
Identities = 42/402 (10%), Positives = 100/402 (24%), Gaps = 42/402 (10%)
Query: 578 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST 637
+ + ++ D +K WD + D + + L A+
Sbjct: 16 DIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVH-KSGLHHVDVLQAIER 74
Query: 638 NDNGIKILATS--DG-IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADR 694
+ + ++AT+ G + R + + A A
Sbjct: 75 DAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRL 134
Query: 695 AASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 754
+ + + G + S + E + + AT +
Sbjct: 135 LSHRLVATDVKGTTY----IWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSV 190
Query: 755 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 814
S ++A N + T R S I +N +
Sbjct: 191 DI-----SERGLIATGFNNGTVQISELSTLRPL---------YNFESQHSMINNSNSIRS 236
Query: 815 SNPEEAVPCFALSKNDSYVMSASGGKISLFNMM--------TFKTMATFMPPPPAATFLA 866
A++ + + + + + + + L+
Sbjct: 237 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS 296
Query: 867 FHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI----TGLAFSHALNVLVSSGA 922
F+ + D ++ ++V+ E + L H I LA + L G
Sbjct: 297 FNDS-GETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG- 354
Query: 923 DSQLCVWSSDGWEKQKNRFLQIPTGRT-PTAQSDTRVQFHQD 963
V+ +K + + D +++ ++
Sbjct: 355 -----VFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE 391
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.8 bits (96), Expect = 4e-04
Identities = 14/154 (9%), Positives = 39/154 (25%), Gaps = 20/154 (12%)
Query: 464 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE-- 521
HV + I L T + + T + + +
Sbjct: 65 HVDVLQAIERDAFELCLVA-TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFW 123
Query: 522 -----------NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 570
+ +T + G W + + + + + T +
Sbjct: 124 ALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFA-----DESNSLTLNWSPTLELQGTVE 178
Query: 571 GFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDM 603
S D ++ +A G ++ +++ ++
Sbjct: 179 SPMTPSQFATSVDISERGLIATGFNNGTVQISEL 212
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.9 bits (143), Expect = 6e-10
Identities = 10/79 (12%), Positives = 27/79 (34%), Gaps = 6/79 (7%)
Query: 464 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK-QYIFEGHEAPVYSVCPHHKEN 522
H ++ I + + + + G + +++ +G ++SV K
Sbjct: 280 HHTNLSAITTFYVSDNI--LVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-- 335
Query: 523 IQFIFSTALDGKIKAWLYD 541
+ + DG+ + D
Sbjct: 336 -TLVAAVEKDGQSFLEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.1 bits (128), Expect = 5e-08
Identities = 25/178 (14%), Positives = 43/178 (24%), Gaps = 25/178 (14%)
Query: 455 VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 514
V Q + H+ V N VIT DDK I+V+D+ N GH+ V++
Sbjct: 2 VPQRTTLRGHMTSVITCLQFEDNY---VITGADDKMIRVYDSINKKFLLQLSGHDGGVWA 58
Query: 515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574
+ H + S GS
Sbjct: 59 LKYAHG---GILVS---------------GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL 100
Query: 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCL 632
+ + D ++ W + + + P +
Sbjct: 101 D----IVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV 154
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.3 bits (118), Expect = 7e-07
Identities = 14/90 (15%), Positives = 31/90 (34%), Gaps = 3/90 (3%)
Query: 844 FNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE-VKSKLKGHS 902
F + + +NI+ G ++ IYN+R + V + + +
Sbjct: 266 RGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQ-FNIYNLRSGKLVHANILKDA 324
Query: 903 KRITGLAFSHALNVLVSSGADSQLCVWSSD 932
+I + F ++ + D Q + D
Sbjct: 325 DQIWSVNFKGK-TLVAAVEKDGQSFLEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.0 bits (107), Expect = 2e-05
Identities = 25/150 (16%), Positives = 48/150 (32%), Gaps = 6/150 (4%)
Query: 871 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
++N + G DD I++Y+ + +L GH + L ++H +LVS D + VW
Sbjct: 22 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD 80
Query: 931 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 990
T R ++ + + L +++ K V
Sbjct: 81 IKKGCCTHVFEGHNSTVRCLDIV-----EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHG 135
Query: 991 PRESSAPITHATFSCDSQLVYACFLDATVC 1020
+ H + A+V
Sbjct: 136 EEHDYPLVFHTPEENPYFVGVLRGHMASVR 165
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.9 bits (138), Expect = 2e-09
Identities = 28/206 (13%), Positives = 58/206 (28%), Gaps = 22/206 (10%)
Query: 456 RQHLE-IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 514
R L+ I + + Q +++ D TIK+WD + I GH V
Sbjct: 2 RHSLQRIHCRSETSKGVYCLQYDDQK-IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLC 60
Query: 515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR------- 567
+ + I + + EA ++
Sbjct: 61 LQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVW 120
Query: 568 ---------TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL 618
+ V D ++A D +IK W+ + + + +++
Sbjct: 121 DMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK-- 178
Query: 619 PASPRIRFNKDGCLLAVSTNDNGIKI 644
L+ ++DN I++
Sbjct: 179 --RGIACLQYRDRLVVSGSSDNTIRL 202
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.1 bits (115), Expect = 1e-06
Identities = 34/136 (25%), Positives = 53/136 (38%), Gaps = 18/136 (13%)
Query: 467 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI 526
G + V++ D TI++WD GA + EGH + + + + I
Sbjct: 176 GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGH----EELVRCIRFDNKRI 231
Query: 527 FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 586
S A DGKIK W D + + G C RT R + QFD +
Sbjct: 232 VSGAYDGKIKVW--DLVAALDPRAPAGTLCL---------RTLVEHSGRVFRL-QFD--E 277
Query: 587 NRFLAAGDDFSIKFWD 602
+ +++ D +I WD
Sbjct: 278 FQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.9 bits (112), Expect = 3e-06
Identities = 25/131 (19%), Positives = 42/131 (32%), Gaps = 15/131 (11%)
Query: 809 TNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAF 867
T + + L D V+S S I L+++ + +
Sbjct: 167 TCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE---LVRC 223
Query: 868 HPQDNNIIAIGMDDSSIQIYNVRVDEVKSK---------LKGHSKRITGLAFSHALNVLV 918
DN I G D I+++++ L HS R+ L F +V
Sbjct: 224 IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE--FQIV 281
Query: 919 SSGADSQLCVW 929
SS D + +W
Sbjct: 282 SSSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (99), Expect = 1e-04
Identities = 15/102 (14%), Positives = 31/102 (30%), Gaps = 15/102 (14%)
Query: 400 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 459
++WD+ + L G D ++++ + R
Sbjct: 201 RLWDIECGAC-----LRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPA 255
Query: 460 E------IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495
+ H G V + F + +++ D TI +WD
Sbjct: 256 GTLCLRTLVEHSGRVFRLQF-DEFQ---IVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.3 bits (87), Expect = 0.003
Identities = 28/206 (13%), Positives = 63/206 (30%), Gaps = 25/206 (12%)
Query: 871 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
D+ I G+ D++I+I++ E K L GH+ + L + + + S
Sbjct: 24 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVII-----------TGS 72
Query: 931 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 990
SD + + + + + +A+++ +
Sbjct: 73 SDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR 132
Query: 991 PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHP 1050
D + + + D T+ V++ + + V + N H
Sbjct: 133 VLVGH-RAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEF-------------VRTLNGHK 178
Query: 1051 LVIAAHPQEPNEFALGLSDGGVHVFE 1076
IA G SD + +++
Sbjct: 179 RGIACLQYRDRLVVSGSSDNTIRLWD 204
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.9 bits (138), Expect = 3e-09
Identities = 18/117 (15%), Positives = 40/117 (34%), Gaps = 9/117 (7%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
+ + + P G V V++ + ++ H V + F++ K
Sbjct: 226 QIFSLGYCPTGEWLAVGMESSNVEVLHVN----KPDKYQLHLHESCVLSLKFAYCGKWF- 280
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 538
++ G D + W GA + + V S + ++I + + D K +
Sbjct: 281 -VSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDD--KYIVTGSGDKKATVY 333
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.9 bits (125), Expect = 9e-08
Identities = 8/131 (6%), Positives = 24/131 (18%), Gaps = 2/131 (1%)
Query: 800 WQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPP 859
+ + + + ++ +
Sbjct: 206 TVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHE 265
Query: 860 PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVS 919
L F D+ + + + S + S +V+
Sbjct: 266 SCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVT 323
Query: 920 SGADSQLCVWS 930
D + V+
Sbjct: 324 GSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.5 bits (124), Expect = 1e-07
Identities = 31/314 (9%), Positives = 77/314 (24%), Gaps = 49/314 (15%)
Query: 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDL--GACSMP 410
TLN G ++ + + G + KVWD+ P
Sbjct: 46 NTLNHGEVVCAVTISNPTRHVY-------------TGGK-----GCVKVWDISHPGNKSP 87
Query: 411 LQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVND 470
+ + + PDG V + I+ + +
Sbjct: 88 VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYAL 147
Query: 471 IAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA 530
+ G+ + + + + + + C + +++
Sbjct: 148 AISPDSKVCFSCCSDGNIAVWDLHN-----QTLVRQFQGHTDGASCIDISNDGTKLWTGG 202
Query: 531 LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV----------- 579
LD +++W ++ ++ Y G G ++ V
Sbjct: 203 LDNTVRSWDLREGRQLQQHDFTS-QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL 261
Query: 580 ---------VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG 630
++F F++ G D + W + + + + D
Sbjct: 262 HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLS---CDISVDD 318
Query: 631 CLLAVSTNDNGIKI 644
+ + D +
Sbjct: 319 KYIVTGSGDKKATV 332
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.6 bits (119), Expect = 5e-07
Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 6/70 (8%)
Query: 426 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC 485
+ ++ G F +++ + G + Q V S +K + +T
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS----KESSSVLSCDISVDDKYI--VTG 324
Query: 486 GDDKTIKVWD 495
DK V++
Sbjct: 325 SGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.6 bits (88), Expect = 0.004
Identities = 17/139 (12%), Positives = 34/139 (24%), Gaps = 27/139 (19%)
Query: 464 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI 523
+ + + + L V + N +Y HE+ V S+ +
Sbjct: 223 FTSQIFSLGYCPTGEWLAVGME---SSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGK- 278
Query: 524 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 583
+ ST D + AW G+ + + S D
Sbjct: 279 -WFVSTGKDNLLNAWRTPY-GASIFQSKESSSVLSCDISVDD------------------ 318
Query: 584 TTKNRFLAAGDDFSIKFWD 602
+ D ++
Sbjct: 319 ---KYIVTGSGDKKATVYE 334
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 56.9 bits (135), Expect = 5e-09
Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 6/101 (5%)
Query: 464 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKEN 522
H + ++ S K L + + I WD + G +F + H + + K +
Sbjct: 11 HNKAITALSSSADGKTL--FSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD 68
Query: 523 IQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA 563
+ + D +K G + + A
Sbjct: 69 LFTVSW---DDHLKVVPAGGSGVDSSKAVANKLSSQPLGLA 106
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 42.7 bits (98), Expect = 1e-04
Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 428 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 487
WSPD + V +++ + + ++ + VN + + + +++ G
Sbjct: 232 WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET---TIVSAGQ 288
Query: 488 DKTIKVWD 495
D IK W+
Sbjct: 289 DSNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 42.7 bits (98), Expect = 2e-04
Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 4/66 (6%)
Query: 475 HPNKQLCVITCGDDKTIKVWDATNGAKQ--YIFEGHEAPVYSVCPHHKENIQFIFSTALD 532
+ + T D ++ VW+ + I H + E I S D
Sbjct: 232 WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET--TIVSAGQD 289
Query: 533 GKIKAW 538
IK W
Sbjct: 290 SNIKFW 295
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 42.3 bits (97), Expect = 2e-04
Identities = 11/46 (23%), Positives = 18/46 (39%)
Query: 893 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK 938
+ GH+K IT L+ S L S+ A+ + W +
Sbjct: 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNR 48
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.4 bits (92), Expect = 8e-04
Identities = 15/92 (16%), Positives = 27/92 (29%), Gaps = 2/92 (2%)
Query: 841 ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-- 898
A DN +A G D+S+ ++N+ +
Sbjct: 205 PYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK 264
Query: 899 KGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
H+ +VS+G DS + W+
Sbjct: 265 GAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.2 bits (131), Expect = 2e-08
Identities = 29/329 (8%), Positives = 83/329 (25%), Gaps = 73/329 (22%)
Query: 363 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVS 422
+ P + LL + S + + V+ + +
Sbjct: 16 DIKIIPSKSLLL-------------ITSWDGSL----TVYKFDIQAKNVDLLQSLRYKHP 58
Query: 423 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEI--------------------- 461
+ + + L + + G Q L
Sbjct: 59 LLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAA 118
Query: 462 ------------------------DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT 497
+++ V + F+ +I ++ ++ +
Sbjct: 119 SWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLP 178
Query: 498 NGAKQYIFEGHEAPVYSVCPH--HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW 555
Y + + + +++DG++ +D+ G + +
Sbjct: 179 LCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN---SSKR 235
Query: 556 CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD 615
+ + T + S ++F AG D I W++ + + + +
Sbjct: 236 FAFRCHRLNLKDTNLAYPVNS---IEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA-- 290
Query: 616 GGLPASPRIRFNKDGCLLAVSTNDNGIKI 644
++ +L ++T+D+ K
Sbjct: 291 -KFNEDSVVKIACSDNILCLATSDDTFKT 318
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.7 bits (127), Expect = 6e-08
Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 6/77 (7%)
Query: 457 QHLEI-DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE---GHEAPV 512
Q ++I A ++DI L + D ++ V+ AK ++ P+
Sbjct: 2 QIVQIEQAPKDYISDIKIIPSKSLL--LITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPL 59
Query: 513 YSVCPHHKENIQFIFST 529
++Q T
Sbjct: 60 LCCNFIDNTDLQIYVGT 76
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.0 bits (120), Expect = 4e-07
Identities = 21/129 (16%), Positives = 36/129 (27%), Gaps = 19/129 (14%)
Query: 423 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEV------------RQHLEIDAHVGGVND 470
+ + + + + V + + + R +L+ VN
Sbjct: 197 RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS 256
Query: 471 IAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFST 529
I FS +K L T G D I W+ K F +E V + +
Sbjct: 257 IEFSPRHKFLY--TAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDN----ILCLA 310
Query: 530 ALDGKIKAW 538
D K
Sbjct: 311 TSDDTFKTN 319
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.8 bits (117), Expect = 1e-06
Identities = 31/263 (11%), Positives = 75/263 (28%), Gaps = 19/263 (7%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
++ + P SL + + +Y + + L+ + + F
Sbjct: 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQ- 71
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
I G + + G+ + + +C K + + + DG I+
Sbjct: 72 -IYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPR 130
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
N G V T + T +R + ++ ++++
Sbjct: 131 NYGDGVIAVKNLNSNNTKVKNKIFTMDTNS---------------SRLIVGMNNSQVQWF 175
Query: 602 DMDSVQLLTSIDADGGLPASPRIR--FNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN 659
+ + + GL R K+ A S+ D + + D + +
Sbjct: 176 RLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR 235
Query: 660 LAYDASRTSENSKPTISPISAAA 682
A+ R + P+++
Sbjct: 236 FAFRCHRLNLKDTNLAYPVNSIE 258
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 54.4 bits (129), Expect = 4e-08
Identities = 40/377 (10%), Positives = 78/377 (20%), Gaps = 39/377 (10%)
Query: 580 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPR-IRFNKDGCLLAVSTN 638
+ ++ D+ S + S P D V N
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK--FGPGTAMMAPDNRTAYVLNN 59
Query: 639 DNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASM 698
G D + + ISP A + +
Sbjct: 60 HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVV 119
Query: 699 VSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLI 758
+ KP T + +
Sbjct: 120 KPPRLEVFSTADGLEAKPVRTFPMPRQVYLM----------------------------R 151
Query: 759 FTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPE 818
+ G+ +A + + T + S
Sbjct: 152 AADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML- 210
Query: 819 EAVPCFALSKNDSYVMSASGGK-ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAI 877
+ +A ++ T KT F +
Sbjct: 211 --YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIY 268
Query: 878 GMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQ 937
+ + Y+++ ++ +AF + L G + L V++ D EK
Sbjct: 269 -GVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 326
Query: 938 KNRFLQIPTGRTPTAQS 954
KN +++P G T
Sbjct: 327 KN--IKLPGGDMSTTTP 341
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 52.4 bits (124), Expect = 2e-07
Identities = 30/305 (9%), Positives = 68/305 (22%), Gaps = 20/305 (6%)
Query: 352 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPL 411
+ + P + P +T ++ + GDI ++ + + N
Sbjct: 33 SCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMY 92
Query: 412 QAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDI 471
A+ P +P L + + + V +
Sbjct: 93 SFAI--SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLM 150
Query: 472 AFSHPNKQLC------VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQF 525
+ + K N ++ + E
Sbjct: 151 RAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML 210
Query: 526 IFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 585
+ +L T AD T Y +
Sbjct: 211 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELY---------FTGLRSP 261
Query: 586 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKIL 645
K+ G + +D+ +L+ + + + F+K G L + N + +
Sbjct: 262 KDPNQIYGVLNRLAKYDLKQRKLIKAANL-DHTYYC--VAFDKKGDKLYLGGTFNDLAVF 318
Query: 646 ATSDG 650
Sbjct: 319 NPDTL 323
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 47.8 bits (112), Expect = 4e-06
Identities = 28/278 (10%), Positives = 64/278 (23%), Gaps = 49/278 (17%)
Query: 358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVK 417
G S S P + N + + +V+
Sbjct: 88 GRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRL----EVFSTADGLEAKPVRTFP 142
Query: 418 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYS------YHGGDEVRQ-----------HLE 460
P V + + DGSL+ + + + + + R+ +
Sbjct: 143 MPR-QVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQ 201
Query: 461 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD-ATNGAKQYIFEGHEAPVYSVCPHH 519
H + + + T D T F ++
Sbjct: 202 SPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSP 261
Query: 520 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 579
K+ Q ++ + + +A+ G + Y
Sbjct: 262 KDPNQIYGV---LNRLAKYDLKQ-RKLIKAANLDHTYYCVAFDKKGDKLY---------- 307
Query: 580 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 617
G + ++ D+++ + +I GG
Sbjct: 308 -----------LGGTFNDLAVFNPDTLEKVKNIKLPGG 334
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 40.9 bits (94), Expect = 6e-04
Identities = 17/190 (8%), Positives = 42/190 (22%), Gaps = 20/190 (10%)
Query: 321 VNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNV 380
V ++ + G + + T L + P +
Sbjct: 147 VYLMRAADDGSLYVAGPDIYKMDVKTG--KYTVALPLRNWNRKGYSAPDVLYFWPHQSPR 204
Query: 381 GDIGLWEVGSRERLVLRNF---------KVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 431
+ + +R + ++ DL Q + D
Sbjct: 205 HEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELY-FTGLRSPKD 263
Query: 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 491
+ + + + Y ++ +AF +L G +
Sbjct: 264 PNQ--IYGVLNRLAKYDLKQRKLIKAAN----LDHTYYCVAFDKKGDKL--YLGGTFNDL 315
Query: 492 KVWDATNGAK 501
V++ K
Sbjct: 316 AVFNPDTLEK 325
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 38.6 bits (88), Expect = 0.004
Identities = 22/193 (11%), Positives = 42/193 (21%), Gaps = 20/193 (10%)
Query: 471 IAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFEGHEAPVYSVCPHHKENIQFIFST 529
A ++ + I + V D + + + + ++
Sbjct: 2 PALKAGHEYM--IVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYV-LN 58
Query: 530 ALDGKIKAW------LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 583
G I + GR + A S DG Y
Sbjct: 59 NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVY---------ATVNP 109
Query: 584 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIK 643
T + ++ + + +R DG L V+ D
Sbjct: 110 TQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG-SLYVAGPDIYKM 168
Query: 644 ILATSDGIRLLRT 656
+ T L
Sbjct: 169 DVKTGKYTVALPL 181
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.4 bits (126), Expect = 7e-08
Identities = 37/322 (11%), Positives = 82/322 (25%), Gaps = 53/322 (16%)
Query: 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD 418
+ + + P + + +R D G +P
Sbjct: 18 NFTTHLSYDPTTNAIA-------------YPCGKSAFVR---CLDDGDSKVPPVVQFTGH 61
Query: 419 PGVSVNRVIWSP--DGSLFGVAYSRHIVQIYSYHGGDEVRQHL-----EIDAHVGGVNDI 471
V V +SP V ++ + E E G ++DI
Sbjct: 62 GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121
Query: 472 AFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL 531
++ ++LCV+ G D +G GH + + ++ +
Sbjct: 122 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 181
Query: 532 DGKIKAWLYDNLGSRVDYEAPG--RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK--- 586
+ S D + + +S D +
Sbjct: 182 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL 241
Query: 587 ----------------------NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRI 624
+F G D +I+ WD+ + + + D + ++
Sbjct: 242 KYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQV 301
Query: 625 RF--NKDGCLLAVSTNDNGIKI 644
+G ++++S D +
Sbjct: 302 GVVATGNGRIISLS-LDGTLNF 322
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.2 bits (110), Expect = 7e-06
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 481 CVITCGDDKTIKVWDATNGA--KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 538
T G D TI+VWD T +++ + + V N I S +LDG + +
Sbjct: 265 KFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFY 323
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.3 bits (105), Expect = 3e-05
Identities = 22/131 (16%), Positives = 48/131 (36%), Gaps = 10/131 (7%)
Query: 851 TMATFMPPPPA-----ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK--SKLKGH-S 902
++ +PP P+ T L++ P N I + ++ + +V + GH S
Sbjct: 4 SLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGS 63
Query: 903 KRITGLAFSHALN--VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF 960
+T + FS L S ++ VW ++ + + + + A + + +
Sbjct: 64 SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISW 123
Query: 961 HQDQIHFLVVH 971
+ VV
Sbjct: 124 DFEGRRLCVVG 134
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.8 bits (96), Expect = 3e-04
Identities = 46/327 (14%), Positives = 82/327 (25%), Gaps = 40/327 (12%)
Query: 289 PTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPED-- 346
PT ++ YP G S + R + D PV V FTGH S + FS +
Sbjct: 27 PTTNAIAYPCGKSAFV----RCLDDGDSKVPPV----VQFTGHGSSVVTTVKFSPIKGSQ 78
Query: 347 ------LPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE--RLVLRN 398
V + V+ ++ + DI G R R+
Sbjct: 79 YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRD 138
Query: 399 FKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQH 458
+ S + + V Y
Sbjct: 139 NFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD 198
Query: 459 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 518
V D+ FS + + + D K + +YI + E +
Sbjct: 199 RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFAL 258
Query: 519 HKENIQFIFSTALDGKIKAWLYDN--LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 576
+ Q + D I+ W + + + A G
Sbjct: 259 SWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATG----------- 307
Query: 577 LGVVQFDTTKNRFLAAGDDFSIKFWDM 603
R ++ D ++ F+++
Sbjct: 308 ---------NGRIISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.7 bits (93), Expect = 7e-04
Identities = 12/89 (13%), Positives = 26/89 (29%), Gaps = 3/89 (3%)
Query: 844 FNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 903
F P A D+ A D++I++++V + K +
Sbjct: 235 GKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ 294
Query: 904 RITGLAFSHAL---NVLVSSGADSQLCVW 929
++ ++S D L +
Sbjct: 295 QLGNQQVGVVATGNGRIISLSLDGTLNFY 323
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 52.9 bits (125), Expect = 9e-08
Identities = 29/299 (9%), Positives = 74/299 (24%), Gaps = 24/299 (8%)
Query: 350 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSM 409
T+T+ ++ M P ++ L + + + + + + +
Sbjct: 28 TLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA------- 80
Query: 410 PLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVN 469
S+ + G V + +++ + G +
Sbjct: 81 ---------LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCH 131
Query: 470 DIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFST 529
S N+ L V D+ + +G V P H +F
Sbjct: 132 SANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRH-----MVFHP 186
Query: 530 ALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 589
++ + + P + + R + + D ++ +
Sbjct: 187 NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPD-GRHLY 245
Query: 590 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPR-IRFNKDGCLLAVS-TNDNGIKILA 646
I + + + S + PR + G L + + I +
Sbjct: 246 ACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYE 304
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.7 bits (119), Expect = 3e-07
Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 13/78 (16%)
Query: 451 GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 510
G DEV + + H G+ + + +I+ D I W +++ + H
Sbjct: 1 GHDEVLKTIS--GHNKGITALTVNP------LISGSYDGRIMEWSSSSM-----HQDHSN 47
Query: 511 PVYSVCPHHKENIQFIFS 528
+ S+ + I
Sbjct: 48 LIVSLDNSKAQEYSSISW 65
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.7 bits (119), Expect = 4e-07
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 844 FNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKGHS 902
+ + PA + +++A G D++I IY+V+ ++ L H
Sbjct: 199 SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK 258
Query: 903 KRITGLAFSHALNVLVSSGADSQLCVWS 930
+ L + + LVSSGAD+ + W+
Sbjct: 259 DGVNNLLWETP-STLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.1 bits (107), Expect = 1e-05
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 426 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC 485
+ L + IYS ++ + L AH GVN++ + P+ +++
Sbjct: 221 NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN--AHKDGVNNLLWETPST---LVSS 275
Query: 486 GDDKTIKVWD 495
G D IK W+
Sbjct: 276 GADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.9 bits (91), Expect = 0.001
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 892 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEK 936
DEV + GH+K IT L + L+S D ++ WSS +
Sbjct: 3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ 43
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 51.5 bits (122), Expect = 3e-07
Identities = 52/396 (13%), Positives = 111/396 (28%), Gaps = 41/396 (10%)
Query: 583 DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGI 642
D + D I D DS +++ ID G R + G L V D I
Sbjct: 29 DLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT-GYAVHI--SRMSASGRYLLVIGRDARI 85
Query: 643 KILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGL-----ADRAAS 697
++ + E +R+ E+ A A +
Sbjct: 86 DMIDLWAK-EPTKVAEIKIGIEARSVES-SKFKGYEDRYTIAGAYWPPQFAIMDGETLEP 143
Query: 698 MVSIPGMNGDVRSLA---DVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 754
+ V + + + S++ + + + + + +NL T I
Sbjct: 144 KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI 203
Query: 755 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 814
F G S+ + + + + + + L
Sbjct: 204 GAAPFLADG----GWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF 259
Query: 815 SNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI 874
+P+ D + S G +K +A + F+ HP+ +++
Sbjct: 260 VHPKYGPVWSTSHLGDGSI-SLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHL 318
Query: 875 IAI------GMDDSSIQIYNVRVDEVKSKLKGHS---------KRITGLAFSHA-----L 914
S+ +++++ + K ++ + KR+ ++
Sbjct: 319 YVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWF 378
Query: 915 NVLVSSGADSQLCVWSSDGWEKQ---KNRFLQIPTG 947
+V S L V + + K+ L PTG
Sbjct: 379 SVWNGKNDSSALVVVDDKTLKLKAVVKDPRLITPTG 414
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 44.6 bits (104), Expect = 5e-05
Identities = 26/276 (9%), Positives = 70/276 (25%), Gaps = 34/276 (12%)
Query: 345 EDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLV-GTNVGDIGLWEVGSRERLVLRNFKVWD 403
++ ++ + P L V + G I L + S++ +++
Sbjct: 5 PEMRESWKVLVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKK--IVKVIDT-- 60
Query: 404 LGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG--DEVRQHLEI 461
G +V+ S G V + + +V +
Sbjct: 61 ----------------GYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG 104
Query: 462 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE 521
+ + + + D + I V + H +
Sbjct: 105 IEARSVESSKFKG-YEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEP 163
Query: 522 NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581
+ I ++ + + + G + T+ G
Sbjct: 164 RVAAIIASHEHPEFIVNVKET-GKVLLVNYKDIDNLTVTSIGAAPFLADGG--------- 213
Query: 582 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 617
+D++ F+ A ++ + + L+++ G
Sbjct: 214 WDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK 249
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 50.6 bits (119), Expect = 5e-07
Identities = 33/333 (9%), Positives = 88/333 (26%), Gaps = 14/333 (4%)
Query: 586 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS-TNDNGIKI 644
++ LA + D + + + I P G + + +
Sbjct: 1 RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60
Query: 645 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGM 704
+ G L R + + ++ + + + A + L +
Sbjct: 61 IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120
Query: 705 NGDVRSLADVKPRITEE-----SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIF 759
+ + S + + D SK++ L + L E+ +
Sbjct: 121 DAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETY 180
Query: 760 TNSGNAILALASNAIHLLWKW---QRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSN 816
+ + ++ R + + + +G M +V +
Sbjct: 181 AQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMD 240
Query: 817 PEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIA 876
+K ++ + F++ ++ P P + + D + +
Sbjct: 241 VFYFSTAVNPAKTRAFGAY---NVLESFDLEKNASIKRV-PLPHSYYSVNVST-DGSTVW 295
Query: 877 IGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLA 909
+G + Y+ E K ++ LA
Sbjct: 296 LGGALGDLAAYDAETLEKKGQVDLPGNASMSLA 328
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 41.7 bits (96), Expect = 4e-04
Identities = 29/291 (9%), Positives = 71/291 (24%), Gaps = 38/291 (13%)
Query: 350 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFK----VWDLG 405
++ + S P +TL + + V R+ L + +
Sbjct: 73 DLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE 132
Query: 406 ACSMPLQAALVKDPG---VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEID 462
A A +D + + V + +V
Sbjct: 133 APRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQH 192
Query: 463 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI-FEGHEAPVYSVCPHHKE 521
G + ++ + D G + +S + +
Sbjct: 193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK 252
Query: 522 NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581
F ++++ + + + ++ S DG+ +
Sbjct: 253 TRAFGA----YNVLESFDLEK-NASIKRVPLPHSYYSVNVSTDGSTVW------------ 295
Query: 582 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP---ASPRIRFNKD 629
G + +D ++++ +D G AS R+ F +D
Sbjct: 296 ---------LGGALGDLAAYDAETLEKKGQVDLPGNASMSLASVRL-FTRD 336
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 40.2 bits (92), Expect = 0.001
Identities = 21/299 (7%), Positives = 69/299 (23%), Gaps = 49/299 (16%)
Query: 400 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR-HIVQIYSYHGGDEVRQH 458
V D ++ + + D G + + +P G + ++ + G+ + +
Sbjct: 14 VVIDTEKMAV-DKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRI 72
Query: 459 LEIDAHVGGVNDIAFS-HPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 517
+ + P+ + I + + +++
Sbjct: 73 DLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE 132
Query: 518 HHKENIQFIFST-----ALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY--- 569
++ ++ G+ + G+ V+ + W D +
Sbjct: 133 APRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQH 192
Query: 570 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTS------------------ 611
+ + + + D+++ ++
Sbjct: 193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK 252
Query: 612 ------------IDADGG-------LPASPR-IRFNKDGCLLAVSTNDNGIKILATSDG 650
D + LP S + + DG + + +
Sbjct: 253 TRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL 311
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 38.2 bits (87), Expect = 0.004
Identities = 15/174 (8%), Positives = 47/174 (27%), Gaps = 9/174 (5%)
Query: 331 HSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGS 390
S + + + T+ S P + + G + +
Sbjct: 146 GSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTA 205
Query: 391 RERLVLRNFKVWDLGACSMPLQAALVK---DPGVSVNRVIWSPDGSLFGVAYSRHIVQIY 447
R+ + + + G +M L+ + + V + + + + ++++ +
Sbjct: 206 RKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESF 265
Query: 448 SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 501
+++ + S + G + +DA K
Sbjct: 266 DLEKNASIKRVP----LPHSYYSVNVSTDGSTV--WLGGALGDLAAYDAETLEK 313
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 49.1 bits (115), Expect = 2e-06
Identities = 14/152 (9%), Positives = 37/152 (24%), Gaps = 12/152 (7%)
Query: 349 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACS 408
+ + S P + P + V E G + +
Sbjct: 208 VVLNFSFEVVSKPFVIPLIPGSPNPTKL---VPRSMTSEAGEYDLNDMYKRSSPINVDPG 264
Query: 409 MPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGV 468
++ + + + + + A + ++ Y ++ +
Sbjct: 265 DYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR-------KVTEVKNNL 317
Query: 469 NDIAFSHPNKQLCVITCGDDKTIKVWDATNGA 500
D+ S K + + DD I +
Sbjct: 318 TDLRLSADRKTV--MVRKDDGKIYTFPLEKPE 347
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 47.2 bits (110), Expect = 8e-06
Identities = 23/332 (6%), Positives = 62/332 (18%), Gaps = 42/332 (12%)
Query: 346 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGD-IGLWEVGSRERLVLRNFKVWDL 404
D+ T + + + + + GT GD +G+++ + +
Sbjct: 30 DVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVF 89
Query: 405 GA----------------------CSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH 442
+ + + S + +
Sbjct: 90 AMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLK 149
Query: 443 IVQIYSYHGGDEVRQHLEIDAHVGG----VNDIAFSHPNKQLCVITCGDDKTIKVWDATN 498
+ Y +E +D A + + D
Sbjct: 150 HGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 209
Query: 499 GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTT 558
+ + + + N +
Sbjct: 210 LNFSFE---VVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDY 266
Query: 559 MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL 618
+ V + A + + +D+ + ++ + L
Sbjct: 267 RMIIPLESSIL------IYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDL 320
Query: 619 PASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650
S D + V +D I
Sbjct: 321 RLSA------DRKTVMVRKDDGKIYTFPLEKP 346
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 43.7 bits (101), Expect = 1e-04
Identities = 20/178 (11%), Positives = 38/178 (21%), Gaps = 5/178 (2%)
Query: 860 PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVS 919
P+ F P D ++IA Q + V RI + V
Sbjct: 3 PSKFAEDFSPLDGDLIAFVSRG---QAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFI 59
Query: 920 SGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFE 979
G + D + +F + F ++
Sbjct: 60 HGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP 119
Query: 980 TTKLECVKQWV--PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINP 1035
T + + S A ++ + V+ K+
Sbjct: 120 TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTE 177
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 42.5 bits (98), Expect = 2e-04
Identities = 31/353 (8%), Positives = 78/353 (22%), Gaps = 20/353 (5%)
Query: 588 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG--IKIL 645
+A D+ +L + R D + + G + I
Sbjct: 16 DLIAFVSRGQAFIQDVSGTYVLKV--PEPLRIRYVR--RGGDTKVAFIHGTREGDFLGIY 71
Query: 646 ATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMN 705
G A N K + + V
Sbjct: 72 DYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDL----ETGKPTVIERSRE 127
Query: 706 GDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA 765
+ K ++ KI NS +
Sbjct: 128 AMITDFTISDNSRFIAYGFPLKHG-----ETDGYVMQAIHVYDMEGRKIFAATTENSHDY 182
Query: 766 ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA 825
A +++ +L + R+ S + + + ++ P I + + +
Sbjct: 183 APAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTS 242
Query: 826 LSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQ 885
+ + ++ + + + +
Sbjct: 243 EAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGE-FAAYYQGAPEKGVLL 301
Query: 886 IYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK 938
Y+V+ K+ +T L S ++ D ++ + + E ++
Sbjct: 302 KYDVK----TRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDER 350
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 41.8 bits (96), Expect = 4e-04
Identities = 28/259 (10%), Positives = 60/259 (23%), Gaps = 24/259 (9%)
Query: 428 WSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG 486
+SP DG L SR I G ++ + + K +
Sbjct: 10 FSPLDGDLIAFV-SRGQAFIQDVSGTYVLKV-----PEPLRIRYVRRGGDTKVAFIHGTR 63
Query: 487 DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR 546
+ + ++D G K FE + V+++ + + +
Sbjct: 64 EGDFLGIYDYRTG-KAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI 122
Query: 547 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV 606
T++ ++ K+ +I +DM+
Sbjct: 123 ERSREAMITDFTISDNSRFI-------------AYGFPLKHGETDGYVMQAIHVYDMEGR 169
Query: 607 QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASR 666
+ A F+ D L + +
Sbjct: 170 K---IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLI 226
Query: 667 TSENSKPTISPISAAAAAA 685
+ + P S + A
Sbjct: 227 PGSPNPTKLVPRSMTSEAG 245
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 48.4 bits (113), Expect = 3e-06
Identities = 9/96 (9%), Positives = 21/96 (21%), Gaps = 5/96 (5%)
Query: 466 GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQF 525
G + + P G ++ + I+ H + +
Sbjct: 18 GTAVVLGNT-PAGDKIQYCNGT--SVYTVPVGSLTDTEIYTEHSHQTTVAKTSP--SGYY 72
Query: 526 IFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAY 561
S + G ++ W + P
Sbjct: 73 CASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDI 108
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 48.0 bits (112), Expect = 4e-06
Identities = 14/106 (13%), Positives = 26/106 (24%), Gaps = 2/106 (1%)
Query: 862 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG 921
A L P + I S + V HS + T S + S
Sbjct: 20 AVVLGNTP-AGDKIQYCNGTS-VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGD 77
Query: 922 ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 967
+ +W + + + +G D+ +
Sbjct: 78 VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEG 123
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 47.2 bits (110), Expect = 7e-06
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 7/61 (11%)
Query: 481 CVITCGDDKTIKVWDATNGAKQYIFEGH---EAPVYSVCPHHKENIQFIFSTALDGKIKA 537
+ + DKTIK+W+ + E + Q + S + +G I
Sbjct: 252 KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK----QALVSISANGFINF 307
Query: 538 W 538
Sbjct: 308 V 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.1 bits (102), Expect = 6e-05
Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 1/89 (1%)
Query: 845 NMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK- 903
F+ + + F D IA D +I+I+NV +V+ + ++
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI 282
Query: 904 RITGLAFSHALNVLVSSGADSQLCVWSSD 932
L LVS A+ + + +
Sbjct: 283 EDQQLGIIWTKQALVSISANGFINFVNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 41.8 bits (96), Expect = 3e-04
Identities = 31/275 (11%), Positives = 69/275 (25%), Gaps = 32/275 (11%)
Query: 397 RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR 456
+ + + + SP G V+I+ +
Sbjct: 38 TSVYTVPV---GSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL 94
Query: 457 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 516
+ I G V DI++ +K++ + G ++ V+ G G + SV
Sbjct: 95 KT-TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVD 153
Query: 517 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 576
+ I + + E + G
Sbjct: 154 FKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTI 213
Query: 577 LGVVQFDTTK---------------------------NRFLAAGDDFSIKFWDMDSVQLL 609
+ D TK + +A D +IK W++ ++++
Sbjct: 214 VLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE 273
Query: 610 TSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 644
+I + ++ L + + I
Sbjct: 274 KTIPVGTRIE-DQQLGIIWTKQALVSISANGFINF 307
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 48.6 bits (115), Expect = 3e-06
Identities = 29/214 (13%), Positives = 50/214 (23%), Gaps = 16/214 (7%)
Query: 420 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD--EVRQHLEIDAHVGGVNDIAFSHPN 477
G +V+ S G V V + + V + +
Sbjct: 61 GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWED 120
Query: 478 KQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 537
K + D + I H + + I ++ +
Sbjct: 121 KYAIA-GAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIV 179
Query: 538 WLYD-NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL-AAGDD 595
+ + VDY TT + R L D + F+ AA
Sbjct: 180 NVKETGKILLVDYTDLNNLKTTEISAE-----------RFLHDGGLDGSHRYFITAANAR 228
Query: 596 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD 629
+ D +L+ D G P R
Sbjct: 229 NKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVH 262
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 44.8 bits (105), Expect = 5e-05
Identities = 20/176 (11%), Positives = 48/176 (27%), Gaps = 23/176 (13%)
Query: 790 KATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTF 849
+ + V P+ M D+ +N V G+I+L + T+
Sbjct: 8 RESWKVHVAPEDRPTQQMNDWDL---------------ENLFSVTLRDAGQIALIDGSTY 52
Query: 850 KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK-GHSKRITGL 908
+ A + + D + + ++ + E + + +
Sbjct: 53 EIKTVL-DTGYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSI 110
Query: 909 AFSHALN-----VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 959
S + + Q + + E +K + + T + RV
Sbjct: 111 ETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVA 166
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 45.2 bits (105), Expect = 3e-05
Identities = 31/263 (11%), Positives = 57/263 (21%), Gaps = 33/263 (12%)
Query: 419 PGVSVNRVIWSPDGSLFGVAYSRH----------IVQIYSYHGGDEVRQHLEIDAHVGGV 468
G + + + DGS A + V+++ DA V
Sbjct: 45 DGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLV 104
Query: 469 ----NDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQ 524
+ + K L + V D A + + + +
Sbjct: 105 GTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDT---- 160
Query: 525 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWC------TTMAYSADGTRTYQGFRKRSLG 578
F DG + + G+ AYS R +
Sbjct: 161 -FFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIH 219
Query: 579 VVQFDTTKNRFLAAGDDFSIKFWD---MDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV 635
+ + +FL A + + +
Sbjct: 220 QIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDR----IYLLVDQRDEWRH 275
Query: 636 STNDNGIKILATSDGIRLLRTFE 658
T + +L G L FE
Sbjct: 276 KTASRFVVVLDAKTG-ERLAKFE 297
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 44.4 bits (103), Expect = 5e-05
Identities = 21/192 (10%), Positives = 44/192 (22%), Gaps = 12/192 (6%)
Query: 322 NVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVG 381
+ ++ T + L+ T G
Sbjct: 158 PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWP-TYTG 216
Query: 382 DIGLWEVGSRERLVLRNFK-----VWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436
I ++ S + L + G Q + + +
Sbjct: 217 KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIY--LLVDQRDEWR 274
Query: 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA 496
+ V + G+ + + ++ I S K L DKT+ + DA
Sbjct: 275 HKTASRFVVVLDAKTGERLAKF----EMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDA 330
Query: 497 TNGAKQYIFEGH 508
+G +
Sbjct: 331 ESGEELRSVNQL 342
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 41.7 bits (96), Expect = 3e-04
Identities = 32/241 (13%), Positives = 60/241 (24%), Gaps = 49/241 (20%)
Query: 409 MPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGV 468
+ + P + DGSL VA+ ++ +
Sbjct: 145 LDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFL-------I 197
Query: 469 NDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHEAPVYSVCPHHKENIQFI 526
N A+S +L T I D ++G +++ E + Q
Sbjct: 198 NHPAYSQKAGRLVWPT--YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVA 255
Query: 527 FS----------------TALDGKIKAWLYD-NLGSRVDYEAPGRWCTTMAYSADGTRTY 569
+ + D G R+ G ++ S D
Sbjct: 256 YHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLL 315
Query: 570 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD 629
+ + D ++ D +S + L S++ G P I
Sbjct: 316 -------------------YALSTGDKTLYIHDAESGEELRSVNQLGHGPQV--ITTADM 354
Query: 630 G 630
G
Sbjct: 355 G 355
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 41.3 bits (95), Expect = 5e-04
Identities = 30/375 (8%), Positives = 79/375 (21%), Gaps = 54/375 (14%)
Query: 538 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS 597
++ D RV G + + DG+ T +R
Sbjct: 31 FVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHA-----------STVFSRIARGERTDY 79
Query: 598 IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
++ +D ++ I D V T L
Sbjct: 80 VEVFDPVTLLPTADI-------------ELPDAPRFLVGTYPWMT----------SLTPD 116
Query: 658 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPR 717
+ + + A + + D
Sbjct: 117 GKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD-----CYHIFPTAPDTFFMHCRDGSLA 171
Query: 718 ITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL 777
+ + TE+ P + P S A + +
Sbjct: 172 KVAFGTEGTPEITHTEVFHPEDEFLINHP-------------AYSQKAGRLVWPTYTGKI 218
Query: 778 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS 837
+ + ++ + + + + + D + +
Sbjct: 219 HQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTA 278
Query: 838 GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN-IIAIGMDDSSIQIYNVRVDEVKS 896
+ + + T + +A F + + + A+ D ++ I++ E
Sbjct: 279 SRFVVVLDAKTGERLAKF-EMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELR 337
Query: 897 KLKGHSKRITGLAFS 911
+ + +
Sbjct: 338 SVNQLGHGPQVITTA 352
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 43.3 bits (100), Expect = 1e-04
Identities = 29/286 (10%), Positives = 65/286 (22%), Gaps = 47/286 (16%)
Query: 349 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKV------- 401
VT T+ GS+PM P + + + D+ + + + +
Sbjct: 22 NKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAV 81
Query: 402 ---------------WDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQI 446
+ A G S + SPDG V +
Sbjct: 82 SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVS 141
Query: 447 YSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 506
V + + G+ + V +
Sbjct: 142 VINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-----SVIDTV 196
Query: 507 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT 566
EA + + + ++ + + + G +A + DG
Sbjct: 197 KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGK 256
Query: 567 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI 612
+ Y +A ++ D + + ++
Sbjct: 257 KVY--------------------VALSFCNTVSVIDTATNTITATM 282
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 41.0 bits (94), Expect = 5e-04
Identities = 10/91 (10%), Positives = 22/91 (24%), Gaps = 4/91 (4%)
Query: 421 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 480
S V + G +++ + + IA + P+ +
Sbjct: 202 PSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG---PDPAGIAVT-PDGKK 257
Query: 481 CVITCGDDKTIKVWDATNGAKQYIFEGHEAP 511
+ T+ V D + P
Sbjct: 258 VYVALSFCNTVSVIDTATNTITATMAVGKNP 288
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 41.1 bits (95), Expect = 6e-04
Identities = 7/88 (7%), Positives = 22/88 (25%), Gaps = 4/88 (4%)
Query: 424 NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVI 483
+ ++ + + G ++ + I +
Sbjct: 276 DGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP----ISNGHDSDAIIAAQDGASDNYA 331
Query: 484 TCGDDKTIKVWDATNGAKQYIFEGHEAP 511
+ + ++DA + Q E + P
Sbjct: 332 NSAGTEVLDIYDAASDQDQSSVELDKGP 359
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 40.0 bits (92), Expect = 0.001
Identities = 17/252 (6%), Positives = 54/252 (21%), Gaps = 27/252 (10%)
Query: 419 PGVSVNRVIWSPDGSLFGVA---YSR-------HIVQIYSYHGGDEVRQ----HLEIDAH 464
G ++ + GS F +A ++R V+++ + +
Sbjct: 63 LGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV 122
Query: 465 VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQ 524
V+ I + L + + + +
Sbjct: 123 GPRVHIIGNCASSACL-LFFLFGSSAAAGLSVPGASDDQLTKSASCFHIH----PGAAAT 177
Query: 525 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 584
+ + A + + + Q + G++ +
Sbjct: 178 HYLGSC-PASLAASDLAAAPAAA-------GIVGAQCTGAQNCSSQAAQANYPGMLVWAV 229
Query: 585 TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 644
+ + + K+ + + T ++
Sbjct: 230 ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSC 289
Query: 645 LATSDGIRLLRT 656
LA ++ +
Sbjct: 290 LAAAENTSSVTA 301
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Score = 39.1 bits (91), Expect = 0.002
Identities = 21/142 (14%), Positives = 37/142 (26%), Gaps = 13/142 (9%)
Query: 808 MTNDVTDSNPEEAVP-CFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLA 866
+ D V A K ++ + + P P L
Sbjct: 206 TMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYI-PVPKNPHGLN 264
Query: 867 FHPQDNNIIAIGMDDSSIQIYNV-RVDEVKSKLKGHSKRITG----------LAFSHALN 915
P IA G ++ + + ++D++ I F N
Sbjct: 265 TSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGN 324
Query: 916 VLVSSGADSQLCVWSSDGWEKQ 937
+ DSQ+C W+ K
Sbjct: 325 AYTTLFIDSQVCKWNIADAIKH 346
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1114 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.95 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.95 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.95 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.95 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.94 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.94 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.93 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.93 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.93 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.92 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.87 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.87 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.86 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.86 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.86 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.85 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.84 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.76 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.76 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.76 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.74 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.72 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.59 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.51 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.51 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.5 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.49 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.33 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.21 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.11 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.04 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.99 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.97 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.96 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.95 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.94 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.86 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.85 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.84 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.83 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.83 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.81 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.79 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.7 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.36 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.33 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.31 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.16 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.85 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.79 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.77 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.77 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.75 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.72 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.65 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.49 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.44 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.38 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.34 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.33 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.29 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.26 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.25 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.25 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.24 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.08 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.06 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.02 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 96.75 | |
| d1uuja_ | 76 | Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te | 96.74 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.23 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 95.31 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 94.29 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 94.22 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 93.47 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 93.42 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 91.68 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 91.03 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 89.39 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 87.93 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 85.69 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 84.6 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 82.97 | |
| d1wp5a_ | 323 | Topoisomerase IV subunit A, ParC, C-terminal domai | 80.48 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.6e-35 Score=324.68 Aligned_cols=293 Identities=13% Similarity=0.175 Sum_probs=240.5
Q ss_pred ceeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEc
Q 001248 350 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 429 (1114)
Q Consensus 350 ~~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 429 (1114)
+..+++.|...|+|++|||+|++ ||+|+ ||.|+|||+.++.... ........+|.+.|.+++|+
T Consensus 43 ~~~~~~~H~~~V~~v~fs~~g~~-latg~-dg~V~iWd~~~~~~~~--------------~~~~~~~~~h~~~I~~v~~s 106 (337)
T d1gxra_ 43 RQINTLNHGEVVCAVTISNPTRH-VYTGG-KGCVKVWDISHPGNKS--------------PVSQLDCLNRDNYIRSCKLL 106 (337)
T ss_dssp EEEEEECCSSCCCEEEECSSSSE-EEEEC-BSEEEEEETTSTTCCS--------------CSEEEECSCTTSBEEEEEEC
T ss_pred eEEEECCCCCcEEEEEECCCCCE-EEEEE-CCEEEEEEccCCcccc--------------eeEEeeecCCCCcEEEEEEc
Confidence 45677789999999999999996 89987 8999999998765432 11112356899999999999
Q ss_pred CCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccc
Q 001248 430 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE 509 (1114)
Q Consensus 430 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~ 509 (1114)
|||++|++|+.||.|++||+...... ....+.+|...|.+++|+|++. ++++++.|+.|++||+.++++.....+|.
T Consensus 107 ~dg~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~~~~~~~~~~~~~~~~~~ 183 (337)
T d1gxra_ 107 PDGCTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISPDSK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHT 183 (337)
T ss_dssp TTSSEEEEEESSSEEEEEECCCC--E-EEEEEECSSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred CCCCEEEEeecccccccccccccccc-cccccccccccccccccccccc--ccccccccccccccccccccccccccccc
Confidence 99999999999999999999865432 2336778999999999999999 79999999999999999999999999999
Q ss_pred cCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEE
Q 001248 510 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 589 (1114)
Q Consensus 510 ~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l 589 (1114)
..|.+++|++ ++..+++++.|+.+++||+++.+....+. +.. .+..++|+|+++++
T Consensus 184 ~~v~~l~~s~--~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~---------------------~i~~l~~~~~~~~l 239 (337)
T d1gxra_ 184 DGASCIDISN--DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTS---------------------QIFSLGYCPTGEWL 239 (337)
T ss_dssp SCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSS---------------------CEEEEEECTTSSEE
T ss_pred cccccccccc--cccccccccccccccccccccceeecccc-ccc---------------------ceEEEEEccccccc
Confidence 9999999865 45799999999999999998765443322 223 34455566666689
Q ss_pred EEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCC
Q 001248 590 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE 669 (1114)
Q Consensus 590 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 669 (1114)
++++.|+.+++||+.+++..... .+...|.+++|+|++++|++++.||.|++||..++. .+..+
T Consensus 240 ~~~~~d~~i~i~d~~~~~~~~~~---~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~-~~~~~------------ 303 (337)
T d1gxra_ 240 AVGMESSNVEVLHVNKPDKYQLH---LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA-SIFQS------------ 303 (337)
T ss_dssp EEEETTSCEEEEETTSSCEEEEC---CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-EEEEE------------
T ss_pred ceecccccccccccccccccccc---ccccccceEEECCCCCEEEEEeCCCeEEEEECCCCC-EEEEc------------
Confidence 99999999999999988765443 334579999999999999999999999999988772 22111
Q ss_pred CCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccc
Q 001248 670 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL 749 (1114)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~ 749 (1114)
.
T Consensus 304 -------------------------------------------------------------------------------~ 304 (337)
T d1gxra_ 304 -------------------------------------------------------------------------------K 304 (337)
T ss_dssp -------------------------------------------------------------------------------E
T ss_pred -------------------------------------------------------------------------------c
Confidence 1
Q ss_pred cccceEEEEEccCcceeeecccCceEEEEee
Q 001248 750 RATKISRLIFTNSGNAILALASNAIHLLWKW 780 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~ 780 (1114)
|...|.+++|+|++++|++++.||.|+|||+
T Consensus 305 ~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 305 ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 5678999999999999999999999999997
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.2e-35 Score=323.63 Aligned_cols=305 Identities=18% Similarity=0.320 Sum_probs=257.5
Q ss_pred eeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEE
Q 001248 460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 539 (1114)
Q Consensus 460 ~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd 539 (1114)
+|.||.++|++++|+|+++ +|+||+.|++|+|||+.+++++.++.+|...|.+++|++ ++.++++++.++.+..|+
T Consensus 12 ~L~GH~~~I~~l~~sp~~~--~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~--~~~~~~~~~~~~~~~~~~ 87 (317)
T d1vyhc1 12 ALSGHRSPVTRVIFHPVFS--VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH--SGKLLASCSADMTIKLWD 87 (317)
T ss_dssp EEECCSSCEEEEEECSSSS--EEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECT--TSSEEEEEETTSCCCEEE
T ss_pred EEcCCCCCeEEEEEcCCCC--EEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeec--cccccccccccccccccc
Confidence 6889999999999999999 899999999999999999999999999999999999865 557999999999999999
Q ss_pred cCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCC
Q 001248 540 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP 619 (1114)
Q Consensus 540 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 619 (1114)
.........+..+...+..+.+++++ +.+++++.|+.+++||+.+++.+..+..+. .
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~ 144 (317)
T d1vyhc1 88 FQGFECIRTMHGHDHNVSSVSIMPNG---------------------DHIVSASRDKTIKMWEVQTGYCVKTFTGHR--E 144 (317)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECSSS---------------------SEEEEEETTSEEEEEETTTCCEEEEEECCS--S
T ss_pred ccccccccccccccccceeeeccCCC---------------------ceEEeeccCcceeEeecccceeeeEEccCC--C
Confidence 98777666666666655555555554 579999999999999999999999888664 4
Q ss_pred CcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhcccccccccccccc
Q 001248 620 ASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMV 699 (1114)
Q Consensus 620 ~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (1114)
.+.+++|++++.+|++++.|+.|++|+..++ .....+.
T Consensus 145 ~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~-~~~~~~~----------------------------------------- 182 (317)
T d1vyhc1 145 WVRMVRPNQDGTLIASCSNDQTVRVWVVATK-ECKAELR----------------------------------------- 182 (317)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEEEEC-----------------------------------------
T ss_pred cceeeecccCCCEEEEEeCCCeEEEEeeccc-eeeEEEe-----------------------------------------
Confidence 6899999999999999999999999998776 2222221
Q ss_pred ccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEe
Q 001248 700 SIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWK 779 (1114)
Q Consensus 700 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~ 779 (1114)
.+...+..+.++|++.........+
T Consensus 183 -------------------------------------------------~~~~~i~~~~~~~~~~~~~~~~~~~------ 207 (317)
T d1vyhc1 183 -------------------------------------------------EHRHVVECISWAPESSYSSISEATG------ 207 (317)
T ss_dssp -------------------------------------------------CCSSCEEEEEECCSCGGGGGGGCCS------
T ss_pred -------------------------------------------------cCCCCceEEEEeeccccceeecccc------
Confidence 1456678888888776443322221
Q ss_pred ecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCC
Q 001248 780 WQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP 858 (1114)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~ 858 (1114)
........++.++++++ |+.|++||+.+++.+.++.+|
T Consensus 208 -----------------------------------------~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~ 246 (317)
T d1vyhc1 208 -----------------------------------------SETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH 246 (317)
T ss_dssp -----------------------------------------CC-------CCEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred -----------------------------------------ceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCC
Confidence 12223345677888888 999999999999999999999
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 001248 859 PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930 (1114)
Q Consensus 859 ~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd 930 (1114)
...|.+++|+| ++++|++|+.||.|++||+.+++++..+.+|.+.|++++|+|++++|++|+.||+|+|||
T Consensus 247 ~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 247 DNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp SSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCCEEEEEECC-CCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 99999999999 899999999999999999999999999999999999999999999999999999999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.6e-34 Score=327.63 Aligned_cols=329 Identities=17% Similarity=0.240 Sum_probs=246.8
Q ss_pred EEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCce
Q 001248 375 LVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDE 454 (1114)
Q Consensus 375 ~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~ 454 (1114)
..+..++.+.+|+....+..... + . ...+|.+.|+||+|||||++||+|+ |++|+|||+.+++.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~-l------------~--~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~ 95 (388)
T d1erja_ 32 LKKQTNDYYILYNPALPREIDVE-L------------H--KSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSL 95 (388)
T ss_dssp SEEECSSCEEEECTTSCCCEEEE-E------------E--EEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCE
T ss_pred cccCCCCcEEEeCCCCCcceeee-e------------E--eeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccce
Confidence 35667788889997765543211 0 0 1236999999999999999999986 88999999998876
Q ss_pred eeee---------------EeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeecc
Q 001248 455 VRQH---------------LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHH 519 (1114)
Q Consensus 455 ~~~~---------------~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 519 (1114)
+... ....+|...|.+++|+|+++ +|++|+.|++|++||..+++.+..+.+|...|.++++++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~--~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~ 173 (388)
T d1erja_ 96 VARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK--FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP 173 (388)
T ss_dssp EEEECC-----------------CCCCBEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred EeeecccccccccccccccccccCCCCCEEEEEECCCCC--cceeccccccccccccccccccccccccccccccccccc
Confidence 5432 11235777899999999999 799999999999999999999999999999999999865
Q ss_pred CCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEE
Q 001248 520 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIK 599 (1114)
Q Consensus 520 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 599 (1114)
++..+++++.++.+++||..+.........+... +.+..+.+++++|++++.|+.|+
T Consensus 174 --~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~l~~~~~d~~i~ 230 (388)
T d1erja_ 174 --SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGV---------------------TTVAVSPGDGKYIAAGSLDRAVR 230 (388)
T ss_dssp --TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCE---------------------EEEEECSTTCCEEEEEETTSCEE
T ss_pred --ccccccccccceeeeeeecccccccccccccccc---------------------ccccccCCCCCeEEEEcCCCeEE
Confidence 4478999999999999999875544433333222 22233344566899999999999
Q ss_pred EEECCCcceEEEeccC-----CCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCC
Q 001248 600 FWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 674 (1114)
Q Consensus 600 iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (1114)
+|+..++..+..+... ++...|.+++|+|++++|++++.||.|++||+.++..... ..
T Consensus 231 i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~---------------- 293 (388)
T d1erja_ 231 VWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSD-SK---------------- 293 (388)
T ss_dssp EEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------------------
T ss_pred EeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccc-cc----------------
Confidence 9999998877766422 2334567777777777777777777777777654410000 00
Q ss_pred ccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccce
Q 001248 675 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 754 (1114)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i 754 (1114)
T Consensus 294 -------------------------------------------------------------------------------- 293 (388)
T d1erja_ 294 -------------------------------------------------------------------------------- 293 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEE
Q 001248 755 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM 834 (1114)
Q Consensus 755 ~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~ 834 (1114)
.
T Consensus 294 --------------------------------------------------------------~----------------- 294 (388)
T d1erja_ 294 --------------------------------------------------------------T----------------- 294 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------c-----------------
Confidence 0
Q ss_pred EEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEE----
Q 001248 835 SASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAF---- 910 (1114)
Q Consensus 835 ~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~---- 910 (1114)
...+........|...|++++|+| ++++|++|+.||.|++||+.+++++..+.+|.+.|+++++
T Consensus 295 -----------~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~ 362 (388)
T d1erja_ 295 -----------PNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGS 362 (388)
T ss_dssp ---------------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSC
T ss_pred -----------ccccceeeecccccceEEEEEECC-CCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCc
Confidence 000011122234667799999999 8999999999999999999999999999999999999975
Q ss_pred --cCCCCEEEEEeCCCcEEEEeCC
Q 001248 911 --SHALNVLVSSGADSQLCVWSSD 932 (1114)
Q Consensus 911 --s~d~~~l~s~s~D~~v~iwd~~ 932 (1114)
+|++++||||+.||+|+||+++
T Consensus 363 ~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 363 SLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp TTCTTCEEEEEEETTSEEEEEEEE
T ss_pred ccCCCCCEEEEEeCCCEEEEEeee
Confidence 5789999999999999999985
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2e-34 Score=315.88 Aligned_cols=306 Identities=16% Similarity=0.309 Sum_probs=263.6
Q ss_pred EeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCC
Q 001248 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1114)
.+.+|.+.|++++|+|++++ |+||+.||+|+|||+.+++.+. .+.+|...|.+++|+|++
T Consensus 12 ~L~GH~~~I~~l~~sp~~~~-l~s~s~Dg~i~iWd~~~~~~~~-------------------~~~~h~~~V~~~~~~~~~ 71 (317)
T d1vyhc1 12 ALSGHRSPVTRVIFHPVFSV-MVSASEDATIKVWDYETGDFER-------------------TLKGHTDSVQDISFDHSG 71 (317)
T ss_dssp EEECCSSCEEEEEECSSSSE-EEEEESSSCEEEEETTTCCCCE-------------------EECCCSSCEEEEEECTTS
T ss_pred EEcCCCCCeEEEEEcCCCCE-EEEEeCCCeEEEEECCCCCEEE-------------------EEeCCCCcEEEEeeeccc
Confidence 45569999999999999995 9999999999999999988766 378899999999999999
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCE
Q 001248 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 512 (1114)
Q Consensus 433 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 512 (1114)
.++++++.++.+.+|+....+... .+.+|...+.++.|++++. .+++++.|+.+++||+++++.+..+.+|...+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 146 (317)
T d1vyhc1 72 KLLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWV 146 (317)
T ss_dssp SEEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred cccccccccccccccccccccccc---ccccccccceeeeccCCCc--eEEeeccCcceeEeecccceeeeEEccCCCcc
Confidence 999999999999999998877554 5778999999999999999 79999999999999999999999999999999
Q ss_pred EEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEE
Q 001248 513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 592 (1114)
Q Consensus 513 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~ 592 (1114)
.+++|++ ++.+|++++.|+.|++|++.+......+..+...+..+.+++++......... ..........+..++++
T Consensus 147 ~~~~~~~--~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 223 (317)
T d1vyhc1 147 RMVRPNQ--DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT-GSETKKSGKPGPFLLSG 223 (317)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCC-SCC-------CCEEEEE
T ss_pred eeeeccc--CCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccc-cceeeeeccCCceeEec
Confidence 9999765 55799999999999999999999888999999999999999987643332222 23334455667889999
Q ss_pred eCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCC
Q 001248 593 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 672 (1114)
Q Consensus 593 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (1114)
+.|+.|++||..+++.+..+..|. ..|.+++|+|++++|++++.||.|++||+.++ +.+..+.
T Consensus 224 ~~d~~i~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~-------------- 286 (317)
T d1vyhc1 224 SRDKTIKMWDVSTGMCLMTLVGHD--NWVRGVLFHSGGKFILSCADDKTLRVWDYKNK-RCMKTLN-------------- 286 (317)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCS--SCEEEEEECSSSSCEEEEETTTEEEEECCTTS-CCCEEEE--------------
T ss_pred cCCCEEEEEECCCCcEEEEEeCCC--CCEEEEEECCCCCEEEEEECCCeEEEEECCCC-cEEEEEc--------------
Confidence 999999999999999999998764 47999999999999999999999999998876 3333332
Q ss_pred CCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCcccccc
Q 001248 673 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 752 (1114)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 752 (1114)
+|..
T Consensus 287 ----------------------------------------------------------------------------~h~~ 290 (317)
T d1vyhc1 287 ----------------------------------------------------------------------------AHEH 290 (317)
T ss_dssp ----------------------------------------------------------------------------CCSS
T ss_pred ----------------------------------------------------------------------------CCCC
Confidence 2667
Q ss_pred ceEEEEEccCcceeeecccCceEEEEe
Q 001248 753 KISRLIFTNSGNAILALASNAIHLLWK 779 (1114)
Q Consensus 753 ~i~~l~~s~~~~~l~~~~~dg~i~vw~ 779 (1114)
.|.+++|+|++++|++++.||.|+|||
T Consensus 291 ~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 291 FVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp CEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 899999999999999999999999996
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.9e-34 Score=318.20 Aligned_cols=282 Identities=12% Similarity=0.171 Sum_probs=239.5
Q ss_pred cccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeC
Q 001248 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d 829 (1114)
|...|.+++|+|+|++|++++ ||.|+|||+....... .... ....+|...|.+++|+||
T Consensus 50 H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~------------------~~~~--~~~~~h~~~I~~v~~s~d 108 (337)
T d1gxra_ 50 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS------------------PVSQ--LDCLNRDNYIRSCKLLPD 108 (337)
T ss_dssp CSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS------------------CSEE--EECSCTTSBEEEEEECTT
T ss_pred CCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccc------------------eeEE--eeecCCCCcEEEEEEcCC
Confidence 889999999999999999986 7899999986432110 0001 111238889999999999
Q ss_pred CCEEEEEe-CCeEEEEEcCCC--ccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCee
Q 001248 830 DSYVMSAS-GGKISLFNMMTF--KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT 906 (1114)
Q Consensus 830 ~~~l~~~~-dg~i~iwd~~~~--~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~ 906 (1114)
+++|++++ ||+|++||+... +....+..|...+.+++|+| ++.++++++.|+.|++|++.++++.....+|...|+
T Consensus 109 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~ 187 (337)
T d1gxra_ 109 GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS 187 (337)
T ss_dssp SSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred CCEEEEeeccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence 99999998 999999998743 45566788899999999999 899999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCCCce
Q 001248 907 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLEC 985 (1114)
Q Consensus 907 ~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~~~~ 985 (1114)
+++|++++..+++++.|+.|++||+.+++... ... + ...|.+++|+|++++|++ +.|+.+++||+.+++.
T Consensus 188 ~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~-----~~~-~---~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 258 (337)
T d1gxra_ 188 CIDISNDGTKLWTGGLDNTVRSWDLREGRQLQ-----QHD-F---TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK 258 (337)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTTEEEE-----EEE-C---SSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE
T ss_pred cccccccccccccccccccccccccccceeec-----ccc-c---ccceEEEEEcccccccceecccccccccccccccc
Confidence 99999999999999999999999998865422 111 1 147899999999999998 5889999999998887
Q ss_pred eeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEE
Q 001248 986 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1065 (1114)
Q Consensus 986 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s 1065 (1114)
... ..|...|++++|+|++++|++++.||.|++||+.+++.+..+. | ...|. +++|+| |+++|++
T Consensus 259 ~~~---~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~--------~-~~~v~--~~~~s~-d~~~l~t 323 (337)
T d1gxra_ 259 YQL---HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK--------E-SSSVL--SCDISV-DDKYIVT 323 (337)
T ss_dssp EEE---CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--------C-SSCEE--EEEECT-TSCEEEE
T ss_pred ccc---cccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc--------C-CCCEE--EEEEeC-CCCEEEE
Confidence 644 3789999999999999999999999999999999999887754 1 12254 899999 6899999
Q ss_pred EeCCCcEEEEec
Q 001248 1066 GLSDGGVHVFEP 1077 (1114)
Q Consensus 1066 ~~~Dg~v~vW~i 1077 (1114)
|+.||+|+|||+
T Consensus 324 ~s~D~~I~vWdl 335 (337)
T d1gxra_ 324 GSGDKKATVYEV 335 (337)
T ss_dssp EETTSCEEEEEE
T ss_pred EeCCCeEEEEEE
Confidence 999999999997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.1e-33 Score=308.41 Aligned_cols=255 Identities=16% Similarity=0.190 Sum_probs=213.4
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
+.+.+.+++++|+|+. |+.++ ++.|.+||+.+++... ++.+|.+.|++++|||||++||
T Consensus 16 ~r~~~~~~a~~~~g~~-l~~~~-~~~v~i~~~~~~~~~~-------------------~~~~H~~~v~~~~~sp~g~~la 74 (311)
T d1nr0a1 16 ARGTAVVLGNTPAGDK-IQYCN-GTSVYTVPVGSLTDTE-------------------IYTEHSHQTTVAKTSPSGYYCA 74 (311)
T ss_dssp CTTCCCCCEECTTSSE-EEEEE-TTEEEEEETTCSSCCE-------------------EECCCSSCEEEEEECTTSSEEE
T ss_pred CCCCeEEEEEcCCCCE-EEEEe-CCEEEEEECCCCceeE-------------------EEcCCCCCEEEEEEeCCCCeEe
Confidence 5567789999999996 66654 6789999999877655 4789999999999999999999
Q ss_pred EEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecC--CCCEEEEeCCCCcceeEeeccccCEEE
Q 001248 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD--DKTIKVWDATNGAKQYIFEGHEAPVYS 514 (1114)
Q Consensus 437 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~h~~~v~~ 514 (1114)
+|+.||+|+|||+.+++.... ..+.+|..+|.+++|+|+++ ++++++. +..++||++++++...++.+|...|.+
T Consensus 75 tg~~dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~d~~--~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~ 151 (311)
T d1nr0a1 75 SGDVHGNVRIWDTTQTTHILK-TTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNS 151 (311)
T ss_dssp EEETTSEEEEEESSSTTCCEE-EEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEE
T ss_pred ccccCceEeeeeeeccccccc-cccccccCcccccccccccc--cccccccccccccccccccccccccccccccccccc
Confidence 999999999999998775432 35788999999999999999 5666654 567999999999999999999999999
Q ss_pred EeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeC
Q 001248 515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 594 (1114)
Q Consensus 515 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 594 (1114)
++|+++.+ ..+++|+.|+.|++||+++.+....+..+...|.++.++|++ +++++++.
T Consensus 152 v~~~~~~~-~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~---------------------~~l~~~~~ 209 (311)
T d1nr0a1 152 VDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG---------------------SLFASTGG 209 (311)
T ss_dssp EEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTS---------------------SEEEEEET
T ss_pred ccccccce-eeecccccccccccccccccccccccccccccccccccCccc---------------------cccccccc
Confidence 99876543 368899999999999999877766666666666666665555 47999999
Q ss_pred CCeEEEEECCCcceEEEeccC-----CCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeecc
Q 001248 595 DFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE 658 (1114)
Q Consensus 595 dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 658 (1114)
|+.|++||..++..+..+... +|...|.+++|+|++++|++|+.||.|++||+.++ +.++.+.
T Consensus 210 d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~-~~~~~l~ 277 (311)
T d1nr0a1 210 DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL-KVEKTIP 277 (311)
T ss_dssp TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCC-cEEEEEE
Confidence 999999999999888877532 24567999999999999999999999999999888 4555553
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.6e-33 Score=314.36 Aligned_cols=342 Identities=15% Similarity=0.248 Sum_probs=254.4
Q ss_pred cccCCCCCe-eEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEE
Q 001248 415 LVKDPGVSV-NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 493 (1114)
Q Consensus 415 ~~~~h~~~V-~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~i 493 (1114)
+|.||.+.| +|++| ||++||+|+.||+|+|||+.+++.+. ++.+|.+.|.+++|++++ +|++|+.|++|++
T Consensus 7 tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~l~~s~~~---~l~s~s~D~~i~i 78 (355)
T d1nexb2 7 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRV 78 (355)
T ss_dssp EEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEE---EEECCSSCEEEEEEETTT---EEEEEETTCCEEE
T ss_pred EECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEE---EEECCCCCEEEEEEcCCC---EEEEEeccccccc
Confidence 589999886 55554 68999999999999999999988766 788999999999999864 5899999999999
Q ss_pred EeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCC-CeEEeee
Q 001248 494 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG-TRTYQGF 572 (1114)
Q Consensus 494 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g-~~~~~~~ 572 (1114)
|++...+.......+............+++.++++++.|+.|++||+.+............... ....+.. .......
T Consensus 79 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 157 (355)
T d1nexb2 79 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL-VFHTPEENPYFVGVL 157 (355)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCE-EESCTTTCTTEEEEE
T ss_pred ccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceecc-ceeccccccceeeee
Confidence 9999988887776655555555544567778999999999999999987655443322221111 1111211 1222222
Q ss_pred cccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCcc
Q 001248 573 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR 652 (1114)
Q Consensus 573 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~ 652 (1114)
......+..+.++++.++++..|+.|++||+.+++.+.....+. ..+.++.+++++.++++++.|+.|++|+..++ .
T Consensus 158 ~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~ 234 (355)
T d1nexb2 158 RGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT--DRIYSTIYDHERKRCISASMDTTIRIWDLENG-E 234 (355)
T ss_dssp ECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEEETTTTEEEEEETTSCEEEEETTTC-C
T ss_pred eeccccccccccccceeeeecccceeeeeecccccceeeeeccc--cccccccccccceeeecccccceEEeeecccc-c
Confidence 23334455667788899999999999999999999888887553 46789999999999999999999999999877 3
Q ss_pred ceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEec
Q 001248 653 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT 732 (1114)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~ 732 (1114)
....+.+
T Consensus 235 ~~~~~~~------------------------------------------------------------------------- 241 (355)
T d1nexb2 235 LMYTLQG------------------------------------------------------------------------- 241 (355)
T ss_dssp EEEEECC-------------------------------------------------------------------------
T ss_pred ccccccc-------------------------------------------------------------------------
Confidence 3333322
Q ss_pred cCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccC
Q 001248 733 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 812 (1114)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~ 812 (1114)
|...|.++.++ ++.+++++.||.|++||+..... ..
T Consensus 242 -----------------h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~----------------------~~--- 277 (355)
T d1nexb2 242 -----------------HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSR----------------------KF--- 277 (355)
T ss_dssp -----------------CSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCE----------------------EE---
T ss_pred -----------------ccccccccccc--cceeeeeecccccccccccccce----------------------ec---
Confidence 55566777775 45789999999999998753211 00
Q ss_pred CCCCCCCCccE-EEEeeCCCEEEEEeCCeEEEEEcCCCcccc-ccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEc
Q 001248 813 TDSNPEEAVPC-FALSKNDSYVMSASGGKISLFNMMTFKTMA-TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV 889 (1114)
Q Consensus 813 ~~~~~~~~v~~-v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~ 889 (1114)
. .|...+.+ .+++++++++++|+||+|++||+++++.+. .+.+|...|.+++|+| + .++++++.||+++||.+
T Consensus 278 ~--~~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~-~-~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 278 S--YHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG-K-TLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp E--EECTTCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEET-T-EEEEEEESSSCEEEEEE
T ss_pred c--cccCCceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcC-C-eEEEEEECCCcEEEEEE
Confidence 0 03334444 467889999998889999999999999885 4678999999999998 5 58888999999777654
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.8e-33 Score=306.71 Aligned_cols=284 Identities=12% Similarity=0.116 Sum_probs=232.6
Q ss_pred cccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeC
Q 001248 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d 829 (1114)
+.+....++++|+|+.++.+. ++.+.+|++.. +..... +. +|...|++++|+|+
T Consensus 16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~----------------------~~~~~~-~~--~H~~~v~~~~~sp~ 69 (311)
T d1nr0a1 16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGS----------------------LTDTEI-YT--EHSHQTTVAKTSPS 69 (311)
T ss_dssp CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTC----------------------SSCCEE-EC--CCSSCEEEEEECTT
T ss_pred CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCC----------------------CceeEE-Ec--CCCCCEEEEEEeCC
Confidence 344566789999999888764 56788888653 222111 22 38999999999999
Q ss_pred CCEEEEEe-CCeEEEEEcCCCccc--cccCCCCCCeEEEEEecCCCcEEEEEeC--CCcEEEEEcccceEEEeecccccC
Q 001248 830 DSYVMSAS-GGKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMD--DSSIQIYNVRVDEVKSKLKGHSKR 904 (1114)
Q Consensus 830 ~~~l~~~~-dg~i~iwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~la~g~~--dg~v~iwd~~~~~~~~~l~~h~~~ 904 (1114)
|++||+|+ ||+|+|||+.++... ..+..|...|.+++|+| ++++|++++. +..++||++.+++....+.+|.+.
T Consensus 70 g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~ 148 (311)
T d1nr0a1 70 GYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS-ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARA 148 (311)
T ss_dssp SSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECT-TSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSC
T ss_pred CCeEeccccCceEeeeeeeccccccccccccccCccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence 99999999 999999999887654 45788999999999999 8899988875 456999999999999999999999
Q ss_pred eeEEEEcCCCCE-EEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCC
Q 001248 905 ITGLAFSHALNV-LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTK 982 (1114)
Q Consensus 905 V~~l~~s~d~~~-l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~ 982 (1114)
|++++|+|++++ |++|+.|++|++||+++++. .....+|. ..|.++.|+|+++++++ +.|+.+++||..+
T Consensus 149 v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~-----~~~~~~~~---~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~ 220 (311)
T d1nr0a1 149 MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF-----KSTFGEHT---KFVHSVRYNPDGSLFASTGGDGTIVLYNGVD 220 (311)
T ss_dssp EEEEEECSSSSCEEEEEETTSCEEEEETTTBEE-----EEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred cccccccccceeeeccccccccccccccccccc-----cccccccc---ccccccccCcccccccccccccccccccccc
Confidence 999999999885 88999999999999998543 33344443 47899999999999998 5799999999999
Q ss_pred Cceeeeeec-----CCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecC
Q 001248 983 LECVKQWVP-----RESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHP 1057 (1114)
Q Consensus 983 ~~~~~~~~~-----~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 1057 (1114)
+.....+.. .+|...|++++|+|++++|++|+.||.|+|||+.+++++..+..+. ......+++.|+
T Consensus 221 ~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~-------~~~~~~~~~~~~- 292 (311)
T d1nr0a1 221 GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGT-------RIEDQQLGIIWT- 292 (311)
T ss_dssp CCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS-------SGGGCEEEEEEC-
T ss_pred ccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCC-------CccceEEEEEec-
Confidence 888776543 3688999999999999999999999999999999999998876221 111333355554
Q ss_pred CCCCeEEEEeCCCcEEEEecc
Q 001248 1058 QEPNEFALGLSDGGVHVFEPL 1078 (1114)
Q Consensus 1058 ~d~~~l~s~~~Dg~v~vW~i~ 1078 (1114)
++.|++++.||.|++||++
T Consensus 293 --~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 293 --KQALVSISANGFINFVNPE 311 (311)
T ss_dssp --SSCEEEEETTCCEEEEETT
T ss_pred --CCEEEEEECCCEEEEEeCC
Confidence 4689999999999999974
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.8e-33 Score=312.40 Aligned_cols=345 Identities=17% Similarity=0.226 Sum_probs=252.2
Q ss_pred EeeccccCCe-eEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEE
Q 001248 459 LEIDAHVGGV-NDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 537 (1114)
Q Consensus 459 ~~l~~h~~~V-~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~ 537 (1114)
.+|.||...| +|++| +++ +|+||+.|++|+|||+.+++++.++.+|.+.|.+++|++ + .+|++++.|+.|++
T Consensus 6 ~tL~GH~~~vitc~~~--~~~--~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~--~-~~l~s~s~D~~i~i 78 (355)
T d1nexb2 6 TTLRGHMTSVITCLQF--EDN--YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH--G-GILVSGSTDRTVRV 78 (355)
T ss_dssp EEEECCSSSCEEEEEE--ETT--EEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEET--T-TEEEEEETTCCEEE
T ss_pred EEECCcCCCcEEEEEE--CCC--EEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcC--C-CEEEEEeccccccc
Confidence 4689999886 56655 577 799999999999999999999999999999999999864 2 47888888888888
Q ss_pred EEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCC
Q 001248 538 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 617 (1114)
Q Consensus 538 wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 617 (1114)
|++..... .........
T Consensus 79 w~~~~~~~---------------------------------------------------------------~~~~~~~~~ 95 (355)
T d1nexb2 79 WDIKKGCC---------------------------------------------------------------THVFEGHNS 95 (355)
T ss_dssp EETTTTEE---------------------------------------------------------------EEEECCCSS
T ss_pred cccccccc---------------------------------------------------------------ccccccccc
Confidence 87654221 111111111
Q ss_pred CCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhcccccccccccc
Q 001248 618 LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAAS 697 (1114)
Q Consensus 618 ~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (1114)
........+.+++.++++++.|+.|++|++.+..........+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~----------------------------------- 140 (355)
T d1nexb2 96 TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY----------------------------------- 140 (355)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CC-----------------------------------
T ss_pred cccccccccccccceeeeecCCCcEEEEEccCCceecccccccee-----------------------------------
Confidence 112334567788899999999999999998766221110000000
Q ss_pred ccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEE
Q 001248 698 MVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL 777 (1114)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~v 777 (1114)
......+..... .+..
T Consensus 141 ---------------------------------------------------------~~~~~~~~~~~~-------~~~~ 156 (355)
T d1nexb2 141 ---------------------------------------------------------PLVFHTPEENPY-------FVGV 156 (355)
T ss_dssp ---------------------------------------------------------CEEESCTTTCTT-------EEEE
T ss_pred ---------------------------------------------------------ccceeccccccc-------eeee
Confidence 000000000000 0000
Q ss_pred EeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccC
Q 001248 778 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM 856 (1114)
Q Consensus 778 w~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~ 856 (1114)
.. .|... ...+.+++++++++. |+.|++||+.+++.+....
T Consensus 157 ~~------------------------------------~~~~~--v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~ 198 (355)
T d1nexb2 157 LR------------------------------------GHMAS--VRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS 198 (355)
T ss_dssp EE------------------------------------CCSSC--EEEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred ee------------------------------------ecccc--ccccccccceeeeecccceeeeeecccccceeeee
Confidence 00 02222 235567888999988 8999999999999998899
Q ss_pred CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc
Q 001248 857 PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEK 936 (1114)
Q Consensus 857 ~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~ 936 (1114)
++...+.++.|+| ++.++++++.||.|++||+.++..+..+.+|...|++++|+ +++|++++.||+|++||+.+...
T Consensus 199 ~~~~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~ 275 (355)
T d1nexb2 199 GHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSR 275 (355)
T ss_dssp CCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCE
T ss_pred ccccccccccccc-cceeeecccccceEEeeeccccccccccccccccccccccc--cceeeeeecccccccccccccce
Confidence 8999999999999 89999999999999999999999999999999999999996 47999999999999999987543
Q ss_pred ccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcC
Q 001248 937 QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD 1016 (1114)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D 1016 (1114)
. . ..|.. .......|++++.+++++.|+.|++||+++++++.... .+|...|++++|+|+ .++++++.|
T Consensus 276 ~----~---~~~~~--~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~-~~~~~~V~~v~~~~~-~~~~~~s~d 344 (355)
T d1nexb2 276 K----F---SYHHT--NLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANI-LKDADQIWSVNFKGK-TLVAAVEKD 344 (355)
T ss_dssp E----E---EEECT--TCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCCSCT-TTTCSEEEEEEEETT-EEEEEEESS
T ss_pred e----c---ccccC--CceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEEEEe-cCCCCCEEEEEEcCC-eEEEEEECC
Confidence 1 1 11221 12233467889999999999999999999999886533 378999999999987 478889999
Q ss_pred CeEEEEEc
Q 001248 1017 ATVCVFSA 1024 (1114)
Q Consensus 1017 g~I~vwd~ 1024 (1114)
|.++||.+
T Consensus 345 g~~~l~~~ 352 (355)
T d1nexb2 345 GQSFLEIL 352 (355)
T ss_dssp SCEEEEEE
T ss_pred CcEEEEEE
Confidence 98766543
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6e-33 Score=314.61 Aligned_cols=249 Identities=13% Similarity=0.161 Sum_probs=201.1
Q ss_pred CCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEE
Q 001248 817 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 895 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~ 895 (1114)
|...|.+++|+|++++|++++ ||.|++||...++.+..+.+|...|.++++++ ++..+++|+.+|.|++||..+....
T Consensus 120 ~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~i~~~d~~~~~~~ 198 (388)
T d1erja_ 120 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQCS 198 (388)
T ss_dssp CCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEE
T ss_pred CCCCEEEEEECCCCCcceeccccccccccccccccccccccccccccccccccc-ccccccccccceeeeeeeccccccc
Confidence 778899999999999999999 89999999999999999999999999999999 8999999999999999999998888
Q ss_pred EeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccc--cccCCCCCCCCCCceEEEEccCCcEEEE-EeC
Q 001248 896 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRF--LQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHE 972 (1114)
Q Consensus 896 ~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~--~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d 972 (1114)
.....+...+....+.+++++|++++.|+.|++|++.++....... .....+|. ..|.+++|+|++++|++ +.|
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~---~~v~~l~~s~~~~~l~s~~~d 275 (388)
T d1erja_ 199 LTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHK---DSVYSVVFTRDGQSVVSGSLD 275 (388)
T ss_dssp EEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCS---SCEEEEEECTTSSEEEEEETT
T ss_pred cccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCC---CCEEEEEECCCCCEEEEEECC
Confidence 7777666655555555689999999999999999999865433211 11122333 47999999999999999 589
Q ss_pred CeEEEEEcCCCceeee----------eecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCC
Q 001248 973 TQLAIFETTKLECVKQ----------WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAG 1042 (1114)
Q Consensus 973 ~~i~iwd~~~~~~~~~----------~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~ 1042 (1114)
+.|++||+.++..... .....|...|++++|+|++++|++|+.||.|++||+.+++.+.++. +
T Consensus 276 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~-------~ 348 (388)
T d1erja_ 276 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ-------G 348 (388)
T ss_dssp SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE-------C
T ss_pred CcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEe-------C
Confidence 9999999987654322 1223678899999999999999999999999999999999999887 4
Q ss_pred CCCCCccceEE----EecCCCCCeEEEEeCCCcEEEEecc
Q 001248 1043 VSSSNVHPLVI----AAHPQEPNEFALGLSDGGVHVFEPL 1078 (1114)
Q Consensus 1043 ~~~~~v~~~~~----~~~~~d~~~l~s~~~Dg~v~vW~i~ 1078 (1114)
|... |..+.+ .|+| |+++|+||+.||+|++|+++
T Consensus 349 H~~~-V~~~~~~~~~~~sp-d~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 349 HRNS-VISVAVANGSSLGP-EYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp CSSC-EEEEEECSSCTTCT-TCEEEEEEETTSEEEEEEEE
T ss_pred CCCC-EEEEEEecCcccCC-CCCEEEEEeCCCEEEEEeee
Confidence 4333 552222 3567 68899999999999999985
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=9.2e-32 Score=298.26 Aligned_cols=286 Identities=14% Similarity=0.185 Sum_probs=236.3
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw 494 (1114)
+|.||.+.|++|+|+|++++||+|+.||+|+|||+.+++.+. .+.+|...|.+++|+|++. ++++|+.|+.+++|
T Consensus 50 tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~v~~~~~~~--~l~~~~~d~~i~~~ 124 (340)
T d1tbga_ 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIY 124 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE---EEECSCSCEEEEEECTTSS--EEEEEETTCCEEEE
T ss_pred EECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEE---EEecccccEEeeEeeccce--eeeeecccceeecc
Confidence 588999999999999999999999999999999999998766 6888999999999999999 79999999999999
Q ss_pred eCCCCc----ceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEe
Q 001248 495 DATNGA----KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 570 (1114)
Q Consensus 495 d~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~ 570 (1114)
+..... ....+.+|............ ..+.....|.....|.................
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 186 (340)
T d1tbga_ 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDD---NQIVTSSGDTTCALWDIETGQQTTTFTGHTGD--------------- 186 (340)
T ss_dssp ESSSSCSCCCEEEEECCCSSCEEEEEEEET---TEEEEEETTTEEEEEETTTTEEEEEEECCSSC---------------
T ss_pred cccccccccccceecccccccccccccccc---ccccccccccccccccccccccccccccccee---------------
Confidence 977543 34566778777776654322 47888888999999887765444443333333
Q ss_pred eecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 571 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
+....+.+.+.++++++.|+.|++||+.+++.+..+..| ...|.+++|+|++++|++++.||.|++|++...
T Consensus 187 ------~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h--~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~ 258 (340)
T d1tbga_ 187 ------VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH--ESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258 (340)
T ss_dssp ------EEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred ------EeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCC--CCCeEEEEECCCCCEEEEEeCCCeEEEEeeccc
Confidence 344455555668999999999999999999999999866 447999999999999999999999999998655
Q ss_pred ccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEE
Q 001248 651 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 730 (1114)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~ 730 (1114)
. ....+.
T Consensus 259 ~-~~~~~~------------------------------------------------------------------------ 265 (340)
T d1tbga_ 259 Q-ELMTYS------------------------------------------------------------------------ 265 (340)
T ss_dssp E-EEEEEC------------------------------------------------------------------------
T ss_pred c-cccccc------------------------------------------------------------------------
Confidence 1 111000
Q ss_pred eccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccc
Q 001248 731 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 810 (1114)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~ 810 (1114)
T Consensus 266 -------------------------------------------------------------------------------- 265 (340)
T d1tbga_ 266 -------------------------------------------------------------------------------- 265 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 001248 811 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 888 (1114)
Q Consensus 811 ~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd 888 (1114)
...+...+.+++|+|++++|++|+ ||.|++||+.+++.+.++.+|...|++++|+| ++.+||+|+.||.|+|||
T Consensus 266 ---~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~-d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 266 ---HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ---CTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred ---cccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeC-CCCEEEEEccCCEEEEeC
Confidence 001455678889999999999998 89999999999999999999999999999999 899999999999999997
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-31 Score=296.56 Aligned_cols=317 Identities=19% Similarity=0.290 Sum_probs=246.6
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw 494 (1114)
+++||.+.|.+ +++++|++||+|+.||+|+|||+.+++.+. ++.+|.+.|.+++|+++ +|++|+.|+++++|
T Consensus 11 ~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~---~~~~h~~~V~~v~~~~~----~l~s~s~D~~~~~~ 82 (342)
T d2ovrb2 11 VLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMRDN----IIISGSTDRTLKVW 82 (342)
T ss_dssp EEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEETT----EEEEEETTSCEEEE
T ss_pred EECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEE---EEeCCCCCEEEEEeCCC----ccccceeccccccc
Confidence 68999999865 467789999999999999999999998766 78899999999999874 69999999999999
Q ss_pred eCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecc
Q 001248 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1114)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~ 574 (1114)
+............+...+...... + ..+..+..|+.+.+|+..+......+.......
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~------------------ 140 (342)
T d2ovrb2 83 NAETGECIHTLYGHTSTVRCMHLH--E--KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAV------------------ 140 (342)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEE--T--TEEEEEETTSEEEEEESSSCCEEEEEECCSSCE------------------
T ss_pred ccccccceecccccceeEeeeecc--c--ccccccccceeEEEeecccccceeeeecccccc------------------
Confidence 998888777777677777665532 2 478889999999999998766554443332211
Q ss_pred cceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccce
Q 001248 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 654 (1114)
Q Consensus 575 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~ 654 (1114)
.........+++++.|+.|++||....+.+..+..+. .....+++++.++++++.||.|++||+..+ +.+
T Consensus 141 -----~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~-~~~ 210 (342)
T d2ovrb2 141 -----RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT----NRVYSLQFDGIHVVSGSLDTSIRVWDVETG-NCI 210 (342)
T ss_dssp -----EEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCS----SCEEEEEECSSEEEEEETTSCEEEEETTTC-CEE
T ss_pred -----eeeccccceeeeecCCCeEEEeecccceeeEEEcCcc----cccccccCCCCEEEEEeCCCeEEEeecccc-eee
Confidence 1122333468899999999999999998888887653 355667778999999999999999998665 111
Q ss_pred eeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccC
Q 001248 655 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 734 (1114)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~ 734 (1114)
..+.
T Consensus 211 ~~~~---------------------------------------------------------------------------- 214 (342)
T d2ovrb2 211 HTLT---------------------------------------------------------------------------- 214 (342)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred eEec----------------------------------------------------------------------------
Confidence 1110
Q ss_pred CCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCC
Q 001248 735 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 814 (1114)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~ 814 (1114)
T Consensus 215 -------------------------------------------------------------------------------- 214 (342)
T d2ovrb2 215 -------------------------------------------------------------------------------- 214 (342)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCC---CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcc
Q 001248 815 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP---PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 890 (1114)
Q Consensus 815 ~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~---~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~ 890 (1114)
.|...+.++++ ++++|++++ |+.|++||+...+....+.. |...+.+++++ ++++++|+.||.|++||+.
T Consensus 215 -~~~~~v~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~s~s~Dg~i~iwd~~ 288 (342)
T d2ovrb2 215 -GHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN---KNFVITSSDDGTVKLWDLK 288 (342)
T ss_dssp -CCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC---SSEEEEEETTSEEEEEETT
T ss_pred -ccccceeEEec--CCCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC---CCeeEEEcCCCEEEEEECC
Confidence 03333444444 445777777 78888888877776655543 45566777665 4699999999999999999
Q ss_pred cceEEEeec-----ccccCeeEEEEcCCCCEEEEEeCCCc----EEEEeCCC
Q 001248 891 VDEVKSKLK-----GHSKRITGLAFSHALNVLVSSGADSQ----LCVWSSDG 933 (1114)
Q Consensus 891 ~~~~~~~l~-----~h~~~V~~l~~s~d~~~l~s~s~D~~----v~iwd~~~ 933 (1114)
+++++..+. +|.+.|++++|+|++.+||+|+.||+ |++||++.
T Consensus 289 tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 289 TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp TCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence 999887763 58889999999999999999999996 99999874
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=5.3e-32 Score=304.10 Aligned_cols=306 Identities=15% Similarity=0.183 Sum_probs=226.7
Q ss_pred CCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCC
Q 001248 420 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG 499 (1114)
Q Consensus 420 ~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 499 (1114)
..+|+|++|||||++||+|+.||.|+|||+.+++. .....+.+|.++|.+++|+|+++ +|++|+.|++|+|||+.++
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~-~~~~~l~gH~~~V~~l~fsp~~~--~l~s~s~D~~i~vWd~~~~ 83 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-VQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWTLKGR 83 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-EEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEEEETT
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCE-EEEEEecCCCCCEEEEEECCCCC--EEEEEECCCeEEEEeeccc
Confidence 35899999999999999999999999999988763 34457889999999999999999 7999999999999999876
Q ss_pred cce--eEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccce
Q 001248 500 AKQ--YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 577 (1114)
Q Consensus 500 ~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v 577 (1114)
... ..+.+|...|.+++|++ +++.+++++.|+.|++|+++.......
T Consensus 84 ~~~~~~~~~~~~~~v~~i~~~p--~~~~l~~~s~d~~i~i~~~~~~~~~~~----------------------------- 132 (371)
T d1k8kc_ 84 TWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVISICYFEQENDWWV----------------------------- 132 (371)
T ss_dssp EEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEEEEEEETTTTEEE-----------------------------
T ss_pred cccccccccccccccccccccc--ccccceeecccCcceeeeeeccccccc-----------------------------
Confidence 543 44567888888888755 446788888888888886653211100
Q ss_pred eEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeec
Q 001248 578 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657 (1114)
Q Consensus 578 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 657 (1114)
..... ..+...|.+++|+|++++|++|+.|+++++|+...... ....
T Consensus 133 ------------------------------~~~~~--~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~-~~~~ 179 (371)
T d1k8kc_ 133 ------------------------------CKHIK--KPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEV-EERP 179 (371)
T ss_dssp ------------------------------EEEEC--TTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTT-SCCC
T ss_pred ------------------------------ccccc--cccccccccccccccccceeccccCcEEEEEeeccCcc-cccc
Confidence 00111 12234688999999999999999999999999765411 0000
Q ss_pred cccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCC
Q 001248 658 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP 737 (1114)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~ 737 (1114)
.. ..|+..
T Consensus 180 ~~-------------------------------------------------------------------~~~~~~----- 187 (371)
T d1k8kc_ 180 AP-------------------------------------------------------------------TPWGSK----- 187 (371)
T ss_dssp CC-------------------------------------------------------------------BTTBSC-----
T ss_pred cc-------------------------------------------------------------------cccccc-----
Confidence 00 000000
Q ss_pred ccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCC
Q 001248 738 NQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP 817 (1114)
Q Consensus 738 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~ 817 (1114)
.+.+..+. ....|
T Consensus 188 ----------------------~~~~~~~~---------------------------------------------~~~~~ 200 (371)
T d1k8kc_ 188 ----------------------MPFGELMF---------------------------------------------ESSSS 200 (371)
T ss_dssp ----------------------CCTTCEEE---------------------------------------------ECCCC
T ss_pred ----------------------ccceeeee---------------------------------------------eccCc
Confidence 00000000 01127
Q ss_pred CCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc--ceE
Q 001248 818 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV--DEV 894 (1114)
Q Consensus 818 ~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~--~~~ 894 (1114)
...|.+++|+|++++|++++ |+.|++||+.++..+..+..|..+|.+++|+| ++.+||+|. |+.+++|.... +..
T Consensus 201 ~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~-d~~~la~g~-d~~~~~~~~~~~~~~~ 278 (371)
T d1k8kc_ 201 CGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFIT-ESSLVAAGH-DCFPVLFTYDSAAGKL 278 (371)
T ss_dssp SSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEE-TTEEEEEET-TSSCEEEEEETTTTEE
T ss_pred cCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeeeecC-CCCEEEEEc-CCceEEEEeeCCCceE
Confidence 78899999999999999998 89999999999999999999999999999999 888888765 67777765432 111
Q ss_pred EE---------------------------------------eecccccCeeEEEEcCCC----CEEEEEeCCCcEEEEeC
Q 001248 895 KS---------------------------------------KLKGHSKRITGLAFSHAL----NVLVSSGADSQLCVWSS 931 (1114)
Q Consensus 895 ~~---------------------------------------~l~~h~~~V~~l~~s~d~----~~l~s~s~D~~v~iwd~ 931 (1114)
.. ....|.+.|+++++.+++ ..++|+|.||+|+|||+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~ 358 (371)
T d1k8kc_ 279 SFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358 (371)
T ss_dssp EECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred EEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeC
Confidence 00 001388899999998754 46999999999999999
Q ss_pred CC
Q 001248 932 DG 933 (1114)
Q Consensus 932 ~~ 933 (1114)
++
T Consensus 359 ~~ 360 (371)
T d1k8kc_ 359 RS 360 (371)
T ss_dssp HH
T ss_pred Cc
Confidence 76
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=5.8e-32 Score=303.73 Aligned_cols=263 Identities=12% Similarity=0.076 Sum_probs=205.8
Q ss_pred CCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEE
Q 001248 358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 437 (1114)
Q Consensus 358 ~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 437 (1114)
.++|+|++|||||++ ||+|+.||.|+|||+.+++..... .+.+|.++|.+++|+|++++|++
T Consensus 7 ~~pIt~~~~s~dg~~-la~~~~~~~i~iw~~~~~~~~~~~-----------------~l~gH~~~V~~l~fsp~~~~l~s 68 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQ-IAICPNNHEVHIYEKSGNKWVQVH-----------------ELKEHNGQVTGVDWAPDSNRIVT 68 (371)
T ss_dssp SSCCCEEEECTTSSE-EEEECSSSEEEEEEEETTEEEEEE-----------------EEECCSSCEEEEEEETTTTEEEE
T ss_pred CCCeEEEEECCCCCE-EEEEeCCCEEEEEECCCCCEEEEE-----------------EecCCCCCEEEEEECCCCCEEEE
Confidence 477999999999995 899999999999999887643321 47899999999999999999999
Q ss_pred EeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcce----eEeeccccCEE
Q 001248 438 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ----YIFEGHEAPVY 513 (1114)
Q Consensus 438 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~----~~~~~h~~~v~ 513 (1114)
|+.|++|+|||+.++... ....+.+|...|.+++|+|+++ .|++|+.|++|++|++...... .....|...|.
T Consensus 69 ~s~D~~i~vWd~~~~~~~-~~~~~~~~~~~v~~i~~~p~~~--~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~ 145 (371)
T d1k8kc_ 69 CGTDRNAYVWTLKGRTWK-PTLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVL 145 (371)
T ss_dssp EETTSCEEEEEEETTEEE-EEEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEE
T ss_pred EECCCeEEEEeecccccc-cccccccccccccccccccccc--cceeecccCcceeeeeecccccccccccccccccccc
Confidence 999999999999987643 3346778999999999999999 7999999999999998876543 33457889999
Q ss_pred EEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEe-eecccceeEEEecCCCCEEEEE
Q 001248 514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ-GFRKRSLGVVQFDTTKNRFLAA 592 (1114)
Q Consensus 514 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~-~~~~~~v~~~~~~~~~~~l~~~ 592 (1114)
+++|++ ++.+|++|+.|++|++|+................ .-.+.+..... ..+...+..++|+|++++++++
T Consensus 146 ~v~~~p--~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~ 219 (371)
T d1k8kc_ 146 SLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG----SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV 219 (371)
T ss_dssp EEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTB----SCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEE
T ss_pred cccccc--cccceeccccCcEEEEEeeccCcccccccccccc----ccccceeeeeeccCccCcEEEEEeeccccccccc
Confidence 999865 5689999999999999998764332211110000 00011111211 1233467778888888999999
Q ss_pred eCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 593 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 593 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
+.|+.|++||+.+++.+..+..+. .+|.+++|+|++++|++|+ |+.+++|.....
T Consensus 220 ~~d~~i~iwd~~~~~~~~~~~~~~--~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~ 274 (371)
T d1k8kc_ 220 SHDSTVCLADADKKMAVATLASET--LPLLAVTFITESSLVAAGH-DCFPVLFTYDSA 274 (371)
T ss_dssp ETTTEEEEEEGGGTTEEEEEECSS--CCEEEEEEEETTEEEEEET-TSSCEEEEEETT
T ss_pred ccCCcceEEeeecccceeeeeccc--ccceeeeecCCCCEEEEEc-CCceEEEEeeCC
Confidence 999999999999999999988664 4799999999998887655 777777766554
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3.2e-31 Score=293.84 Aligned_cols=293 Identities=19% Similarity=0.305 Sum_probs=245.8
Q ss_pred ceeEecc-CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEE
Q 001248 350 TVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 428 (1114)
Q Consensus 350 ~~~~~~~-h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 428 (1114)
+..++|. |.+.|++++|+|++++ ||||+.||+|+|||+.+++.+. .+..|...|.+++|
T Consensus 46 ~~~~tL~GH~~~I~~l~~s~~~~~-l~sgs~Dg~v~iWd~~~~~~~~-------------------~~~~~~~~v~~v~~ 105 (340)
T d1tbga_ 46 RTRRTLRGHLAKIYAMHWGTDSRL-LVSASQDGKLIIWDSYTTNKVH-------------------AIPLRSSWVMTCAY 105 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSE-EEEEETTTEEEEEETTTTEEEE-------------------EEECSCSCEEEEEE
T ss_pred eeeEEECCCCCCEEEEEECCCCCE-EEEEECCCceeeeecccceeEE-------------------EEecccccEEeeEe
Confidence 3456565 9999999999999995 9999999999999999998776 36789999999999
Q ss_pred cCCCCeEEEEeCCCeEEEEEccCCcee-eeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeec
Q 001248 429 SPDGSLFGVAYSRHIVQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG 507 (1114)
Q Consensus 429 spdg~~las~~~dg~i~iwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 507 (1114)
+|+++++++|+.|+.+++|+....... .....+.+|...........+. .+.....|.....|+............
T Consensus 106 ~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (340)
T d1tbga_ 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFTG 182 (340)
T ss_dssp CTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETT---EEEEEETTTEEEEEETTTTEEEEEEEC
T ss_pred eccceeeeeecccceeecccccccccccccceeccccccccccccccccc---ccccccccccccccccccccccccccc
Confidence 999999999999999999998765432 2333577888877777666554 477888899999999888877777777
Q ss_pred cccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCC
Q 001248 508 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 587 (1114)
Q Consensus 508 h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~ 587 (1114)
+...+....+.+ .+.++++++.|+.|++||+++......+..|...|.+++|+|++.
T Consensus 183 ~~~~~~~~~~~~--~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~--------------------- 239 (340)
T d1tbga_ 183 HTGDVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN--------------------- 239 (340)
T ss_dssp CSSCEEEEEECT--TSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSS---------------------
T ss_pred cceeEeeecccc--ccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCC---------------------
Confidence 888888887654 447999999999999999998887777777777777666666554
Q ss_pred EEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccC
Q 001248 588 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT 667 (1114)
Q Consensus 588 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 667 (1114)
+|++++.|+.|++|++.....+..+....+...+.+++|+|++++|++|+.||.|++||+.++ +.+..+.
T Consensus 240 ~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~--------- 309 (340)
T d1tbga_ 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA-DRAGVLA--------- 309 (340)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTC-CEEEEEC---------
T ss_pred EEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCC-cEEEEEc---------
Confidence 799999999999999999998888876666677999999999999999999999999998877 3333332
Q ss_pred CCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCc
Q 001248 668 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE 747 (1114)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~ 747 (1114)
T Consensus 310 -------------------------------------------------------------------------------- 309 (340)
T d1tbga_ 310 -------------------------------------------------------------------------------- 309 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccceEEEEEccCcceeeecccCceEEEEe
Q 001248 748 NLRATKISRLIFTNSGNAILALASNAIHLLWK 779 (1114)
Q Consensus 748 ~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~ 779 (1114)
+|...|.+++|+|++.+|++++.||.|+|||
T Consensus 310 -~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 310 -GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp -CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred -CCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 2677899999999999999999999999996
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=3.7e-31 Score=287.68 Aligned_cols=294 Identities=15% Similarity=0.149 Sum_probs=227.1
Q ss_pred cceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhh
Q 001248 606 VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAA 685 (1114)
Q Consensus 606 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1114)
|+..+.+.+| ...|++++|+||+++|++|+.||+|++||+.++ +..+.+.
T Consensus 2 g~~~~~~~GH--~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~-~~~~~~~--------------------------- 51 (299)
T d1nr0a2 2 GSIDQVRYGH--NKAITALSSSADGKTLFSADAEGHINSWDISTG-ISNRVFP--------------------------- 51 (299)
T ss_dssp TEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEECSS---------------------------
T ss_pred CccceEcCCC--CCCcEEEEECCCCCEEEEEcCCCeEEEEECCCC-cEEEEEc---------------------------
Confidence 4566777766 558999999999999999999999999999877 2222211
Q ss_pred ccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcce
Q 001248 686 ATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA 765 (1114)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 765 (1114)
..|...|.+++|+|++.
T Consensus 52 --------------------------------------------------------------~~h~~~v~~v~~~~~g~- 68 (299)
T d1nr0a2 52 --------------------------------------------------------------DVHATMITGIKTTSKGD- 68 (299)
T ss_dssp --------------------------------------------------------------CSCSSCEEEEEECTTSC-
T ss_pred --------------------------------------------------------------CCCCCcEEEEEeeccce-
Confidence 12677899999999997
Q ss_pred eeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEeCCeEEEEE
Q 001248 766 ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFN 845 (1114)
Q Consensus 766 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~dg~i~iwd 845 (1114)
+++++.|+.+++|+......... .. ....+...+.+++++++++++++++++.+++|+
T Consensus 69 ~~~~~~d~~v~~~~~~~~~~~~~-----------------~~-----~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~ 126 (299)
T d1nr0a2 69 LFTVSWDDHLKVVPAGGSGVDSS-----------------KA-----VANKLSSQPLGLAVSADGDIAVAACYKHIAIYS 126 (299)
T ss_dssp EEEEETTTEEEEECSSSSSSCTT-----------------SC-----CEEECSSCEEEEEECTTSSCEEEEESSEEEEEE
T ss_pred eecccceeeEEEeccCCcccccc-----------------cc-----ccccccccccccccccccccccccccccccccc
Confidence 66677889999998653211100 00 001256778899999999999999999999999
Q ss_pred cCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEE-eecccccCeeEEEEcCCCCEEEEEeCCC
Q 001248 846 MMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS-KLKGHSKRITGLAFSHALNVLVSSGADS 924 (1114)
Q Consensus 846 ~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~-~l~~h~~~V~~l~~s~d~~~l~s~s~D~ 924 (1114)
.... .... ....+.+++|+| ++++|++|+.||.|++||+.+++... ....|...|++++|+|++++|++++.|+
T Consensus 127 ~~~~--~~~~--~~~~~~~~~~s~-~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 201 (299)
T d1nr0a2 127 HGKL--TEVP--ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSR 201 (299)
T ss_dssp TTEE--EEEE--CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred cccc--cccc--cccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 6432 2222 334688999999 89999999999999999999877543 4457999999999999999999999999
Q ss_pred cEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCCCceeeeeecCCC-CcCeeEEE
Q 001248 925 QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRES-SAPITHAT 1002 (1114)
Q Consensus 925 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h-~~~v~~l~ 1002 (1114)
.|++||+.++.... ......+|. ..|.+++|+|+|.+|++ +.|+.|++||+.++..........| ...|.+++
T Consensus 202 ~i~~~~~~~~~~~~--~~~~~~~h~---~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 276 (299)
T d1nr0a2 202 KVIPYSVANNFELA--HTNSWTFHT---AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI 276 (299)
T ss_dssp CEEEEEGGGTTEES--CCCCCCCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEE
T ss_pred cccccccccccccc--ccccccccc---cccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEE
Confidence 99999998754322 223333443 47999999999999999 5889999999998876555544444 44566665
Q ss_pred ECCCCCEEEEEEcCCeEEEEEcC
Q 001248 1003 FSCDSQLVYACFLDATVCVFSAA 1025 (1114)
Q Consensus 1003 ~s~dg~~l~s~s~Dg~I~vwd~~ 1025 (1114)
++++++|++++.||+|++||+.
T Consensus 277 -~~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 277 -WLNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp -EEETTEEEEEETTSCEEEEECC
T ss_pred -ECCCCEEEEEeCCCEEEEEecc
Confidence 5677899999999999999974
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.8e-31 Score=290.18 Aligned_cols=323 Identities=19% Similarity=0.266 Sum_probs=246.3
Q ss_pred EeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEE
Q 001248 459 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 538 (1114)
Q Consensus 459 ~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~w 538 (1114)
..|+||.+.|.+ +++++|+ +|+||+.|++|+|||+.++++++++.+|.+.|.+++|++ .+|++++.|+.+++|
T Consensus 10 ~~l~GH~~~V~s-~~~~~g~--~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~----~~l~s~s~D~~~~~~ 82 (342)
T d2ovrb2 10 KVLKGHDDHVIT-CLQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD----NIIISGSTDRTLKVW 82 (342)
T ss_dssp EEEECSTTSCEE-EEEEETT--EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET----TEEEEEETTSCEEEE
T ss_pred EEECCcCCceEE-EEEECCC--EEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC----Cccccceeccccccc
Confidence 378999999865 3666788 799999999999999999999999999999999999853 489999999999999
Q ss_pred EcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCC
Q 001248 539 LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL 618 (1114)
Q Consensus 539 d~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 618 (1114)
+................+..... ....+..+..|+.+.+|+..+++....+....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~-- 137 (342)
T d2ovrb2 83 NAETGECIHTLYGHTSTVRCMHL-----------------------HEKRVVSGSRDATLRVWDIETGQCLHVLMGHV-- 137 (342)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEE-----------------------ETTEEEEEETTSEEEEEESSSCCEEEEEECCS--
T ss_pred ccccccceecccccceeEeeeec-----------------------ccccccccccceeEEEeecccccceeeeeccc--
Confidence 98865544443333333332222 22357788999999999999988877775432
Q ss_pred CCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccc
Q 001248 619 PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASM 698 (1114)
Q Consensus 619 ~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (1114)
.....+......+++++.|+.|++||.... .....+.+
T Consensus 138 --~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~-~~~~~~~~--------------------------------------- 175 (342)
T d2ovrb2 138 --AAVRCVQYDGRRVVSGAYDFMVKVWDPETE-TCLHTLQG--------------------------------------- 175 (342)
T ss_dssp --SCEEEEEECSSCEEEEETTSCEEEEEGGGT-EEEEEECC---------------------------------------
T ss_pred --ccceeeccccceeeeecCCCeEEEeecccc-eeeEEEcC---------------------------------------
Confidence 234455566778888888899998887544 11111100
Q ss_pred cccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEE
Q 001248 699 VSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLW 778 (1114)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw 778 (1114)
T Consensus 176 -------------------------------------------------------------------------------- 175 (342)
T d2ovrb2 176 -------------------------------------------------------------------------------- 175 (342)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCC
Q 001248 779 KWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP 857 (1114)
Q Consensus 779 ~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~ 857 (1114)
|. .....+++++.++++++ ||.|++||+..++.+..+.+
T Consensus 176 --------------------------------------~~--~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~ 215 (342)
T d2ovrb2 176 --------------------------------------HT--NRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTG 215 (342)
T ss_dssp --------------------------------------CS--SCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred --------------------------------------cc--cccccccCCCCEEEEEeCCCeEEEeecccceeeeEecc
Confidence 21 22334556788899988 99999999999999999999
Q ss_pred CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecc---cccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 001248 858 PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG---HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 934 (1114)
Q Consensus 858 ~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~---h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~ 934 (1114)
|...+.++++++ ++|++|+.||.|++||+...+....+.+ |...+.++.++ ++++++|+.||+|++||++++
T Consensus 216 ~~~~v~~~~~~~---~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg 290 (342)
T d2ovrb2 216 HQSLTSGMELKD---NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTG 290 (342)
T ss_dssp CCSCEEEEEEET---TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTC
T ss_pred cccceeEEecCC---CEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCC
Confidence 999999988865 5999999999999999998887777665 55666666664 579999999999999999874
Q ss_pred ccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEE
Q 001248 935 EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF 1014 (1114)
Q Consensus 935 ~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s 1014 (1114)
+.... + ......+|...|++++|+|++.+|++|+
T Consensus 291 ~~i~~------------------~----------------------------~~~~~~~~~~~v~~v~~s~~~~~la~g~ 324 (342)
T d2ovrb2 291 EFIRN------------------L----------------------------VTLESGGSGGVVWRIRASNTKLVCAVGS 324 (342)
T ss_dssp CEEEE------------------E----------------------------EECTTGGGTCEEEEEEECSSEEEEEEEC
T ss_pred CEEEE------------------E----------------------------ecccCCCCCCCEEEEEECCCCCEEEEEe
Confidence 42110 0 0011135678899999999999999999
Q ss_pred cCCe----EEEEEcCC
Q 001248 1015 LDAT----VCVFSAAN 1026 (1114)
Q Consensus 1015 ~Dg~----I~vwd~~~ 1026 (1114)
.||+ |++||++.
T Consensus 325 ~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 325 RNGTEETKLLVLDFDV 340 (342)
T ss_dssp SSSSSCCEEEEEECCC
T ss_pred CCCCCeeEEEEEeCCC
Confidence 9985 99999864
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.1e-30 Score=283.86 Aligned_cols=281 Identities=17% Similarity=0.233 Sum_probs=208.9
Q ss_pred eeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEee-ccccCEEEEeeccCCCceEEEEEecCCeEEEE
Q 001248 460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 538 (1114)
Q Consensus 460 ~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~w 538 (1114)
.+.||...|++++|+||++ +|+||+.|++|++||+++++++..+. +|...|.+++|+++ +. +++++.|+.+++|
T Consensus 7 ~~~GH~~~V~~l~~s~dg~--~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~--g~-~~~~~~d~~v~~~ 81 (299)
T d1nr0a2 7 VRYGHNKAITALSSSADGK--TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK--GD-LFTVSWDDHLKVV 81 (299)
T ss_dssp EECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTT--SC-EEEEETTTEEEEE
T ss_pred EcCCCCCCcEEEEECCCCC--EEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecc--ce-eecccceeeEEEe
Confidence 6889999999999999999 79999999999999999999888874 69999999998764 33 6777889999999
Q ss_pred EcCCCCCee---eecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccC
Q 001248 539 LYDNLGSRV---DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD 615 (1114)
Q Consensus 539 d~~~~~~~~---~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 615 (1114)
+........ ....+...+..+++++++ ..++ ++.++.+++|+... .......
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g---------------------~~~~-~~~~~~i~~~~~~~--~~~~~~~- 136 (299)
T d1nr0a2 82 PAGGSGVDSSKAVANKLSSQPLGLAVSADG---------------------DIAV-AACYKHIAIYSHGK--LTEVPIS- 136 (299)
T ss_dssp CSSSSSSCTTSCCEEECSSCEEEEEECTTS---------------------SCEE-EEESSEEEEEETTE--EEEEECS-
T ss_pred ccCCcccccccccccccccccccccccccc---------------------cccc-cccccccccccccc--ccccccc-
Confidence 986533211 112233344444444444 4444 45567899999543 2222221
Q ss_pred CCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhcccccccccc
Q 001248 616 GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA 695 (1114)
Q Consensus 616 ~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1114)
..+.+++|+|+++++++++.||.|++||+.++. .....
T Consensus 137 ---~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~-~~~~~-------------------------------------- 174 (299)
T d1nr0a2 137 ---YNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS-VSEVK-------------------------------------- 174 (299)
T ss_dssp ---SCEEEEEECTTSCEEEEEETTSEEEEEEEETTE-EEEEE--------------------------------------
T ss_pred ---ccccccccccccccccccccccccccccccccc-ccccc--------------------------------------
Confidence 246789999999999999999999999976541 10000
Q ss_pred ccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceE
Q 001248 696 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH 775 (1114)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i 775 (1114)
T Consensus 175 -------------------------------------------------------------------------------- 174 (299)
T d1nr0a2 175 -------------------------------------------------------------------------------- 174 (299)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccc--
Q 001248 776 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM-- 852 (1114)
Q Consensus 776 ~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~-- 852 (1114)
. ..|...|.+++|+|++++|++++ |+.|++||+.++...
T Consensus 175 -~-------------------------------------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~ 216 (299)
T d1nr0a2 175 -T-------------------------------------IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH 216 (299)
T ss_dssp -E-------------------------------------EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC
T ss_pred -c-------------------------------------ccccccccccccccccccccccccccccccccccccccccc
Confidence 0 00555677777778888888777 788888887765543
Q ss_pred -cccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceE--EEeeccc-ccCeeEEEEcCCCCEEEEEeCCCcEEE
Q 001248 853 -ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV--KSKLKGH-SKRITGLAFSHALNVLVSSGADSQLCV 928 (1114)
Q Consensus 853 -~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~--~~~l~~h-~~~V~~l~~s~d~~~l~s~s~D~~v~i 928 (1114)
..+.+|...|++++|+| ++.+||+|+.||.|++||+.+++. +.....| ...|.+++| +++++|++++.|++|++
T Consensus 217 ~~~~~~h~~~v~~l~~s~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~i 294 (299)
T d1nr0a2 217 TNSWTFHTAKVACVSWSP-DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKF 294 (299)
T ss_dssp CCCCCCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEE
T ss_pred cccccccccccccccccc-cccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEE
Confidence 34567889999999999 899999999999999999987643 2333344 455666655 56789999999999999
Q ss_pred EeCC
Q 001248 929 WSSD 932 (1114)
Q Consensus 929 wd~~ 932 (1114)
||+.
T Consensus 295 Wdl~ 298 (299)
T d1nr0a2 295 WNVP 298 (299)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9984
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.5e-29 Score=277.86 Aligned_cols=287 Identities=14% Similarity=0.151 Sum_probs=218.1
Q ss_pred cceEEEEEccCcceeeecccCc-eEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCC-CCCccEEEEee-
Q 001248 752 TKISRLIFTNSGNAILALASNA-IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP-EEAVPCFALSK- 828 (1114)
Q Consensus 752 ~~i~~l~~s~~~~~l~~~~~dg-~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~-~~~v~~v~~s~- 828 (1114)
..+.+++|+|+++.++.++.+. .++.|+...... .... .+. +| ...|++++|+|
T Consensus 18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~--------------------~~~~-~~~--gh~~~~v~~v~fsP~ 74 (325)
T d1pgua1 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKV--------------------PPVV-QFT--GHGSSVVTTVKFSPI 74 (325)
T ss_dssp TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSS--------------------CSEE-EEC--TTTTSCEEEEEECSS
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCc--------------------cceE-EEe--CCCCCCEEEEEEeeC
Confidence 4567889999999998876553 345554321100 0010 111 24 56799999997
Q ss_pred -CCCEEEEEe-CCeEEEEEcCCCccccc--------cCCCCCCeEEEEEecCCCcEEEEEeC--CCcEEEEEcccceEEE
Q 001248 829 -NDSYVMSAS-GGKISLFNMMTFKTMAT--------FMPPPPAATFLAFHPQDNNIIAIGMD--DSSIQIYNVRVDEVKS 896 (1114)
Q Consensus 829 -d~~~l~~~~-dg~i~iwd~~~~~~~~~--------~~~~~~~i~~l~~sp~d~~~la~g~~--dg~v~iwd~~~~~~~~ 896 (1114)
++++|++|+ ||+|+|||+..++.... +..|..+|.+++|++ ++++|++++. ++.+++|+..+++.+.
T Consensus 75 ~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 153 (325)
T d1pgua1 75 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWDSGNSLG 153 (325)
T ss_dssp TTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETTTCCEEE
T ss_pred CCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECC-CCCccceeeccccceEEEEeecccccce
Confidence 678999999 99999999976654433 346788999999999 8888877654 6789999999999999
Q ss_pred eecccccCeeEEEEcCCCCE-EEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccC-CcEEEE-EeCC
Q 001248 897 KLKGHSKRITGLAFSHALNV-LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-QIHFLV-VHET 973 (1114)
Q Consensus 897 ~l~~h~~~V~~l~~s~d~~~-l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspd-g~~l~~-~~d~ 973 (1114)
.+.+|...|++++|+|++.+ +++++.|+.+++|++...+... ......++. ..|.+++|+|| +.++++ +.|+
T Consensus 154 ~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~--~~~~~~~~~---~~v~~v~~~pd~~~~l~s~~~d~ 228 (325)
T d1pgua1 154 EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA--SDRTHHKQG---SFVRDVEFSPDSGEFVITVGSDR 228 (325)
T ss_dssp ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEE--EECSSSCTT---CCEEEEEECSTTCCEEEEEETTC
T ss_pred eeeecccccccccccccccceEEEeecccccccccccccccce--ecccccCCC---CccEEeeeccccceecccccccc
Confidence 99999999999999999875 7789999999999998754322 122223332 47899999997 678887 6899
Q ss_pred eEEEEEcCCCceeeeeecCCCCcCeeEEEEC---CCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccc
Q 001248 974 QLAIFETTKLECVKQWVPRESSAPITHATFS---CDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHP 1050 (1114)
Q Consensus 974 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s---~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1050 (1114)
.|++||+++++.+..+. +|...+.++.|+ |||++|++++.|+.|+|||+.+++++..+..+.. ...+..
T Consensus 229 ~i~iwd~~~~~~~~~l~--~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~------~~~~~~ 300 (325)
T d1pgua1 229 KISCFDGKSGEFLKYIE--DDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ------QLGNQQ 300 (325)
T ss_dssp CEEEEETTTCCEEEECC--BTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTT------CGGGCE
T ss_pred ceeeeeecccccccccc--ccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCC------cccCeE
Confidence 99999999999988876 667777666665 7899999999999999999999999988762211 111333
Q ss_pred eEEEecCCCCCeEEEEeCCCcEEEEec
Q 001248 1051 LVIAAHPQEPNEFALGLSDGGVHVFEP 1077 (1114)
Q Consensus 1051 ~~~~~~~~d~~~l~s~~~Dg~v~vW~i 1077 (1114)
+++.+.+ +.+|++|+.||+|++||+
T Consensus 301 ~~~~~~~--~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 301 VGVVATG--NGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred EEEEECC--CCEEEEEECCCEEEEEEC
Confidence 4455554 468999999999999996
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.4e-28 Score=270.08 Aligned_cols=258 Identities=15% Similarity=0.207 Sum_probs=193.3
Q ss_pred CCCceEEEEcCCCCeEEEEEecC-CcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCC-CCCeeEEEEcC--CCC
Q 001248 358 GSSPMSMDFHPVQQTLLLVGTNV-GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP-GVSVNRVIWSP--DGS 433 (1114)
Q Consensus 358 ~~~v~~v~~spdg~~ll~tg~~d-g~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h-~~~V~~l~~sp--dg~ 433 (1114)
...+++++|+|+|+. |+.++.+ ..|+.|+....+... ...+.+| ...|++++|+| +|+
T Consensus 17 ~~~~t~l~~~~~~~~-la~~~~~~~~i~~~~~~~~~~~~-----------------~~~~~gh~~~~v~~v~fsP~~~g~ 78 (325)
T d1pgua1 17 RNFTTHLSYDPTTNA-IAYPCGKSAFVRCLDDGDSKVPP-----------------VVQFTGHGSSVVTTVKFSPIKGSQ 78 (325)
T ss_dssp TTCCCCCEEETTTTE-EEEEETTEEEEEECCSSCCSSCS-----------------EEEECTTTTSCEEEEEECSSTTCC
T ss_pred CCCeEEEEECCCCCE-EEEEeCCCEEEEEEeCCCCCccc-----------------eEEEeCCCCCCEEEEEEeeCCCCC
Confidence 345689999999996 6665533 335566654332211 0125566 56899999998 678
Q ss_pred eEEEEeCCCeEEEEEccCCceeee-----eEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeecc
Q 001248 434 LFGVAYSRHIVQIYSYHGGDEVRQ-----HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH 508 (1114)
Q Consensus 434 ~las~~~dg~i~iwd~~~~~~~~~-----~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h 508 (1114)
+||+|+.||+|+|||+..++.... ...+..|.++|.+++|+++++.+..++++.++.+++|++++++++..+.+|
T Consensus 79 ~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h 158 (325)
T d1pgua1 79 YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGH 158 (325)
T ss_dssp EEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSC
T ss_pred EEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeec
Confidence 999999999999999986554321 123557889999999999999643444456888999999999999999999
Q ss_pred ccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeec---CCCCeeEEEEEecCCCeEEeeecccceeEEEecCC
Q 001248 509 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE---APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 585 (1114)
Q Consensus 509 ~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~---~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~ 585 (1114)
...|.+++|++..+ .++++++.|+.+++||....+...... .+...|.+++|+|++
T Consensus 159 ~~~v~~~~~~~~~~-~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~-------------------- 217 (325)
T d1pgua1 159 SQRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDS-------------------- 217 (325)
T ss_dssp SSCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTT--------------------
T ss_pred cccccccccccccc-ceEEEeecccccccccccccccceecccccCCCCccEEeeecccc--------------------
Confidence 99999999976543 468889999999999987654443332 233345555554442
Q ss_pred CCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEc---CCCCEEEEEeCCCcEEEEEccCCccceeec
Q 001248 586 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN---KDGCLLAVSTNDNGIKILATSDGIRLLRTF 657 (1114)
Q Consensus 586 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s---~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 657 (1114)
+.++++++.|+.|++||+++++.+..+..|.. .+.++.|+ ++|++|++++.|+.|+|||+.++ +.++.+
T Consensus 218 ~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~--~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~-~~~~~~ 289 (325)
T d1pgua1 218 GEFVITVGSDRKISCFDGKSGEFLKYIEDDQE--PVQGGIFALSWLDSQKFATVGADATIRVWDVTTS-KCVQKW 289 (325)
T ss_dssp CCEEEEEETTCCEEEEETTTCCEEEECCBTTB--CCCSCEEEEEESSSSEEEEEETTSEEEEEETTTT-EEEEEE
T ss_pred ceeccccccccceeeeeecccccccccccccc--ccccceeeeeccCCCEEEEEeCCCeEEEEECCCC-CEEEEE
Confidence 35789999999999999999999999886643 56666666 78999999999999999999887 444444
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=2.4e-27 Score=255.48 Aligned_cols=268 Identities=19% Similarity=0.271 Sum_probs=206.9
Q ss_pred eEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEE
Q 001248 458 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 537 (1114)
Q Consensus 458 ~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~ 537 (1114)
..++.||..+|++++|+| |+||+.||+|++||+.++ ..+|...|.++++.+. ..+++++.|+++++
T Consensus 6 i~~l~gH~~~I~~l~~s~------l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~---~~~~s~s~D~~v~~ 71 (287)
T d1pgua2 6 LKTISGHNKGITALTVNP------LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA---QEYSSISWDDTLKV 71 (287)
T ss_dssp EEEECCCSSCEEEEETTT------TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCST---TCCEEEETTTEEEE
T ss_pred eEEECCCCCceEEEEECc------EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCC---CeEEEEeecccccc
Confidence 347999999999999986 799999999999998764 3579999999997532 46899999999999
Q ss_pred EEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCC
Q 001248 538 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 617 (1114)
Q Consensus 538 wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 617 (1114)
|++.... ....+..+.+.+++ . ++..+.++.+.+|+..+++.+..+...
T Consensus 72 w~~~~~~-------~~~~~~~~~~~~~~---------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 120 (287)
T d1pgua2 72 NGITKHE-------FGSQPKVASANNDG---------------------F-TAVLTNDDDLLILQSFTGDIIKSVRLN-- 120 (287)
T ss_dssp TTEEEEE-------CSSCEEEEEECSSS---------------------E-EEEEETTSEEEEEETTTCCEEEEEECS--
T ss_pred ccccccc-------cccceeeeeeccCC---------------------c-eEEEeecccceeeeccceeeeeecccc--
Confidence 9875321 11223344444443 3 455566778999999999988887644
Q ss_pred CCCcCeEEEcCCCCEEEEEeCCC-cEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccc
Q 001248 618 LPASPRIRFNKDGCLLAVSTNDN-GIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAA 696 (1114)
Q Consensus 618 ~~~v~~~~~s~d~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1114)
....++++++..+++++.++ .+++|++.+...... +
T Consensus 121 ---~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~-~--------------------------------------- 157 (287)
T d1pgua2 121 ---SPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFD-L--------------------------------------- 157 (287)
T ss_dssp ---SCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEE-C---------------------------------------
T ss_pred ---ceeeeeeccCcceeeeccccceeeeeeccccceeee-e---------------------------------------
Confidence 23567788888888887765 689998643310000 0
Q ss_pred cccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEE
Q 001248 697 SMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHL 776 (1114)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~ 776 (1114)
T Consensus 158 -------------------------------------------------------------------------------- 157 (287)
T d1pgua2 158 -------------------------------------------------------------------------------- 157 (287)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCcccc-c
Q 001248 777 LWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMA-T 854 (1114)
Q Consensus 777 vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~-~ 854 (1114)
. ..+...+++++|+|++++|++++ ||.|++||+.++.... .
T Consensus 158 -----------------------------------~--~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~ 200 (287)
T d1pgua2 158 -----------------------------------K--TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSR 200 (287)
T ss_dssp -----------------------------------S--SCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECC
T ss_pred -----------------------------------e--eccCCceeEEEeccCccccccccccccccceeeccccccccc
Confidence 0 01455678888888888888888 8899999988876554 4
Q ss_pred cCCCCCCeEEEEEecC---------CCcEEEEEeCCCcEEEEEccc-ceEEEeecccccCeeEEEEcCCCCEEEEEeCCC
Q 001248 855 FMPPPPAATFLAFHPQ---------DNNIIAIGMDDSSIQIYNVRV-DEVKSKLKGHSKRITGLAFSHALNVLVSSGADS 924 (1114)
Q Consensus 855 ~~~~~~~i~~l~~sp~---------d~~~la~g~~dg~v~iwd~~~-~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~ 924 (1114)
+.+|...|.+++|+|. ++.+||+|+.|++|++||+.+ ++.+..+.+|.+.|++++|+|++ .|++++.|+
T Consensus 201 ~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~ 279 (287)
T d1pgua2 201 WAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADA 279 (287)
T ss_dssp SCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTS
T ss_pred ccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCC
Confidence 6788999999999872 356899999999999999977 56778889999999999999986 689999999
Q ss_pred cEEEEeC
Q 001248 925 QLCVWSS 931 (1114)
Q Consensus 925 ~v~iwd~ 931 (1114)
+|++|++
T Consensus 280 ~v~iW~i 286 (287)
T d1pgua2 280 CIKRWNV 286 (287)
T ss_dssp CEEEEEE
T ss_pred eEEEEEE
Confidence 9999986
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=7.9e-27 Score=257.71 Aligned_cols=328 Identities=12% Similarity=0.089 Sum_probs=222.4
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw 494 (1114)
+..+|.+.|++|+|||++++||+|+.||+|+|||+.++..........+|..+|.+++|+|++.. +|++|+.|++|++|
T Consensus 6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~-~l~sg~~d~~v~~w 84 (342)
T d1yfqa_ 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKV 84 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEE
T ss_pred cCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCC-EEEEcccccceeee
Confidence 57899999999999999999999999999999999887655444455579999999999998765 79999999999999
Q ss_pred eCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecc
Q 001248 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1114)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~ 574 (1114)
++..+........+...+....+.. .+...+++++.++.+++||++.......
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~wd~~~~~~~~~-------------------------- 137 (342)
T d1yfqa_ 85 DLIGSPSFQALTNNEANLGICRICK-YGDDKLIAASWDGLIEVIDPRNYGDGVI-------------------------- 137 (342)
T ss_dssp CSSSSSSEEECBSCCCCSCEEEEEE-ETTTEEEEEETTSEEEEECHHHHTTBCE--------------------------
T ss_pred ecccccccccccccccccccccccc-cccccccccccccccceeecccccccee--------------------------
Confidence 9998877766655544433322212 2234667777777777776643221110
Q ss_pred cceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccce
Q 001248 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 654 (1114)
Q Consensus 575 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~ 654 (1114)
.......+..........+.+++..+++++.|+.|++|++.......
T Consensus 138 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~ 184 (342)
T d1yfqa_ 138 ---------------------------------AVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN 184 (342)
T ss_dssp ---------------------------------EEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCC
T ss_pred ---------------------------------eecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccc
Confidence 01111111112234567778888999999999999999987662211
Q ss_pred eeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccC
Q 001248 655 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 734 (1114)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~ 734 (1114)
.....
T Consensus 185 ~~~~~--------------------------------------------------------------------------- 189 (342)
T d1yfqa_ 185 GTIEE--------------------------------------------------------------------------- 189 (342)
T ss_dssp CEEEE---------------------------------------------------------------------------
T ss_pred eeeee---------------------------------------------------------------------------
Confidence 11000
Q ss_pred CCCccccccccCccccccceEE-EEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCC
Q 001248 735 SEPNQCRSLRLPENLRATKISR-LIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 813 (1114)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~i~~-l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~ 813 (1114)
......+.. ..+..++..+++++.||.+.+|++............... . .......
T Consensus 190 -------------~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~--~--------~~~~~~~ 246 (342)
T d1yfqa_ 190 -------------SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF--R--------CHRLNLK 246 (342)
T ss_dssp -------------CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE--E--------CCCCCTT
T ss_pred -------------cccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeecccccee--e--------eeeeccC
Confidence 001122333 334456777888889999999987643322111100000 0 0001112
Q ss_pred CCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc
Q 001248 814 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 892 (1114)
Q Consensus 814 ~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~ 892 (1114)
...|...+.+++|+|++++|++|+ ||+|++||+.+++.+.++..+ ..+..++|+| ++++||+|+.|+.+++|....
T Consensus 247 ~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~-~~~~l~~a~sdd~~~~~~~~~- 323 (342)
T d1yfqa_ 247 DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIAC-SDNILCLATSDDTFKTNAAID- 323 (342)
T ss_dssp CCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEE-CSSEEEEEEECTHHHHCSSSC-
T ss_pred CCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEEe-CCCEEEEEEcCCcEEEeeeeC-
Confidence 224777899999999999999999 999999999999988887643 3466788888 889999999999888876432
Q ss_pred eEEEeecccccCeeE
Q 001248 893 EVKSKLKGHSKRITG 907 (1114)
Q Consensus 893 ~~~~~l~~h~~~V~~ 907 (1114)
..+..|...|..
T Consensus 324 ---~~~~~~~~~i~~ 335 (342)
T d1yfqa_ 324 ---QTIELNASSIYI 335 (342)
T ss_dssp ---TTSCCCCCEEEE
T ss_pred ---CCccCCCCeEEE
Confidence 245556666653
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=9.9e-27 Score=262.96 Aligned_cols=293 Identities=16% Similarity=0.221 Sum_probs=193.2
Q ss_pred eeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcc------eeEeeccccCEEEEee-----ccCCCceEEEE
Q 001248 460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK------QYIFEGHEAPVYSVCP-----HHKENIQFIFS 528 (1114)
Q Consensus 460 ~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~------~~~~~~h~~~v~~~~~-----~~~~~~~~l~s 528 (1114)
..++|.+.|.++++++ + +++|++.|++|+|||..+... ......|...+..+.. ....++.++++
T Consensus 9 ~~~~H~~~I~~v~~~~--~--~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 84 (393)
T d1sq9a_ 9 AGKAHDADIFSVSACN--S--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT 84 (393)
T ss_dssp ESSCSSSCEEEEEECS--S--EEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred cCCcccCccEEEEEeC--C--EEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEE
Confidence 4679999999999874 4 689999999999999776542 1222334443322221 11223457889
Q ss_pred EecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCC-----CCEEEEEeCCCeEEEEEC
Q 001248 529 TALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT-----KNRFLAAGDDFSIKFWDM 603 (1114)
Q Consensus 529 ~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~iwd~ 603 (1114)
++.||.|++|++...........+. ... .........+..+++.++ +.++++++.||.+++|++
T Consensus 85 ~~~dg~v~~w~~~~~~~~~~~~~~~-------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~ 153 (393)
T d1sq9a_ 85 TSFSGDLLFYRITREDETKKVIFEK-------LDL----LDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKF 153 (393)
T ss_dssp EETTSCEEEEEEEECTTTCCEEEEE-------ECC----SCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEE
T ss_pred EeCCCcEEEEEccCCCceeeeeccc-------cce----eeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEe
Confidence 9999999999987544332111000 000 000001112333333332 357899999999999997
Q ss_pred CCcc---------------eEEEe-ccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccC
Q 001248 604 DSVQ---------------LLTSI-DADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT 667 (1114)
Q Consensus 604 ~~~~---------------~~~~~-~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 667 (1114)
.... ..... ........+.+++|+|++ +|++|+.||+|++||+.++ +.+..++....
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~-~~~~~~~~~~~----- 226 (393)
T d1sq9a_ 154 HPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL-RPLYNFESQHS----- 226 (393)
T ss_dssp ESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT-EEEEEEECCC------
T ss_pred ecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccc-ccccccccccc-----
Confidence 4321 11111 112223458899999998 8899999999999999877 22222211000
Q ss_pred CCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCc
Q 001248 668 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE 747 (1114)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~ 747 (1114)
T Consensus 227 -------------------------------------------------------------------------------- 226 (393)
T d1sq9a_ 227 -------------------------------------------------------------------------------- 226 (393)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEe
Q 001248 748 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 827 (1114)
Q Consensus 748 ~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s 827 (1114)
+ .+|...|.+++|+
T Consensus 227 ----------------------------------------------------------------l--~~h~~~V~~l~~s 240 (393)
T d1sq9a_ 227 ----------------------------------------------------------------M--INNSNSIRSVKFS 240 (393)
T ss_dssp --------------------------------------------------------------------CCCCCEEEEEEC
T ss_pred ----------------------------------------------------------------c--ccccceEEEcccc
Confidence 0 0155556666666
Q ss_pred eCCCEEEEEe-CC---eEEEEEcCCCccccc-------------cCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcc
Q 001248 828 KNDSYVMSAS-GG---KISLFNMMTFKTMAT-------------FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 890 (1114)
Q Consensus 828 ~d~~~l~~~~-dg---~i~iwd~~~~~~~~~-------------~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~ 890 (1114)
|||++|++|+ |+ .|++||+.+++.+.. +.+|...|++++|+| ++++|++|+.|++|+|||+.
T Consensus 241 pdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fsp-d~~~l~S~s~D~~v~vWd~~ 319 (393)
T d1sq9a_ 241 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVK 319 (393)
T ss_dssp SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETT
T ss_pred cccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCC-CCCeeEEECCCCEEEEEECC
Confidence 6666666665 43 366666665555444 357999999999999 99999999999999999999
Q ss_pred cceEEEeecccccCee----EEEEcCCCCEEEEEe
Q 001248 891 VDEVKSKLKGHSKRIT----GLAFSHALNVLVSSG 921 (1114)
Q Consensus 891 ~~~~~~~l~~h~~~V~----~l~~s~d~~~l~s~s 921 (1114)
+++++.++++|.+.|. .++|++++..+++++
T Consensus 320 ~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~ 354 (393)
T d1sq9a_ 320 TKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354 (393)
T ss_dssp TTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred CCCEEEEECCcCCcccCCccEEEECCCCCEEEEcc
Confidence 9999999999998886 589999999887654
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.5e-26 Score=261.37 Aligned_cols=348 Identities=10% Similarity=0.090 Sum_probs=230.7
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceee---eeEeeccccCCeeEEE------ecCCCCeeEEEEe
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR---QHLEIDAHVGGVNDIA------FSHPNKQLCVITC 485 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~---~~~~l~~h~~~V~~v~------~s~d~~~~~l~s~ 485 (1114)
...+|.+.|.++++++ ++|++++.|++|+|||..+.+... .......|...+..+. ++.... .+++++
T Consensus 9 ~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~ 85 (393)
T d1sq9a_ 9 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFEL-CLVATT 85 (393)
T ss_dssp ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEE-EEEEEE
T ss_pred cCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCC-cEEEEE
Confidence 4689999999999874 799999999999999987654211 1112233444433322 222222 267899
Q ss_pred cCCCCEEEEeCCCCcceeEe----------eccccCEEEEeeccCCC---ceEEEEEecCCeEEEEEcCCCCCee-eecC
Q 001248 486 GDDKTIKVWDATNGAKQYIF----------EGHEAPVYSVCPHHKEN---IQFIFSTALDGKIKAWLYDNLGSRV-DYEA 551 (1114)
Q Consensus 486 ~~d~~i~iwd~~~~~~~~~~----------~~h~~~v~~~~~~~~~~---~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~ 551 (1114)
+.|+.|++|++........+ ..+...+..++|.+..+ +.++++++.||.+++|++....... ....
T Consensus 86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~ 165 (393)
T d1sq9a_ 86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL 165 (393)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence 99999999998755433221 12455677777765532 4789999999999999986543222 1111
Q ss_pred CCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccC----CCCCCcCeEEEc
Q 001248 552 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD----GGLPASPRIRFN 627 (1114)
Q Consensus 552 ~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~v~~~~~s 627 (1114)
+......+..... ........+.+++|+|++ +|++|+.|++|++||+.+++.+..+... +|...|.+++|+
T Consensus 166 ~~~~~~~~~~~~~----~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 240 (393)
T d1sq9a_ 166 NWSPTLELQGTVE----SPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 240 (393)
T ss_dssp CCCCEEEEEEEEC----CSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred eeccceeccccee----cccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccc
Confidence 1111111111110 011122346678888876 7899999999999999999988776532 356689999999
Q ss_pred CCCCEEEEEeCCCc---EEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCC
Q 001248 628 KDGCLLAVSTNDNG---IKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGM 704 (1114)
Q Consensus 628 ~d~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (1114)
|||++|++|+.|++ |++||+.++ ..+..+......
T Consensus 241 pdg~~l~sgs~D~t~~~i~lwd~~~g-~~~~~l~~~~~~----------------------------------------- 278 (393)
T d1sq9a_ 241 PQGSLLAIAHDSNSFGCITLYETEFG-ERIGSLSVPTHS----------------------------------------- 278 (393)
T ss_dssp SSTTEEEEEEEETTEEEEEEEETTTC-CEEEEECBC--------------------------------------------
T ss_pred cccceeeeecCCCCcceeeecccccc-eeeeeecccccc-----------------------------------------
Confidence 99999999999875 899998877 333322110000
Q ss_pred CCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccc
Q 001248 705 NGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTE 784 (1114)
Q Consensus 705 ~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~ 784 (1114)
..
T Consensus 279 ----------------------------------------------------------~~-------------------- 280 (393)
T d1sq9a_ 279 ----------------------------------------------------------SQ-------------------- 280 (393)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------------------------------------cc--------------------
Confidence 00
Q ss_pred cCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeE
Q 001248 785 RNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAAT 863 (1114)
Q Consensus 785 ~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~ 863 (1114)
....+ .+|...|++++|+||+++|++++ |++|+|||+.+++++.++.+|...|.
T Consensus 281 -----------------------~~~~~--~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~ 335 (393)
T d1sq9a_ 281 -----------------------ASLGE--FAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIE 335 (393)
T ss_dssp --------------------------CC--BSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCS
T ss_pred -----------------------ceeee--ecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCccc
Confidence 00001 13889999999999999999999 99999999999999999999988775
Q ss_pred ----EEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001248 864 ----FLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 931 (1114)
Q Consensus 864 ----~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~ 931 (1114)
.++|+| ++..+++++ ...++.+..+. .... .......|++++.|+.|++|.-
T Consensus 336 ~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~--------~~~~----~~~~~~~~~~~~~d~~ir~~~~ 391 (393)
T d1sq9a_ 336 IEEDILAVDE-HGDSLAEPG---VFDVKFLKKGW--------RSGM----GADLNESLCCVCLDRSIRWFRE 391 (393)
T ss_dssp SGGGCCCBCT-TSCBCSSCC---EEEEEEECTTT--------SBST----TCTTSCEEEEEETTTEEEEEEE
T ss_pred CCccEEEECC-CCCEEEEcc---cceEEECccCc--------eecc----ccCCCCEEEEEEcCCeEEEEeC
Confidence 588999 787776543 22222222111 1100 0122456899999999999963
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=8.3e-26 Score=243.44 Aligned_cols=276 Identities=21% Similarity=0.305 Sum_probs=206.0
Q ss_pred eeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEE
Q 001248 457 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIK 536 (1114)
Q Consensus 457 ~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~ 536 (1114)
++....+|...|+|++| ||+ +|+||+.||+|+|||+.+++++.++.+|.+.|.+++| ++++|++|+.|+.|+
T Consensus 7 ~i~~~~~~~~~V~c~~~--d~~--~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~----~~~~l~s~s~D~~i~ 78 (293)
T d1p22a2 7 RIHCRSETSKGVYCLQY--DDQ--KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY----DERVIITGSSDSTVR 78 (293)
T ss_dssp CEECCCSSCCCEEEEEC--CSS--EEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC----CSSEEEEEETTSCEE
T ss_pred EEeccCCCCCCEEEEEE--cCC--EEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec----ccceeeccccccccc
Confidence 33356678889998765 677 7999999999999999999999999999999999986 346999999999999
Q ss_pred EEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEe-ccC
Q 001248 537 AWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI-DAD 615 (1114)
Q Consensus 537 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~ 615 (1114)
+|++................ ..+.+....++++..++.+.+|+.......... ...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (293)
T d1p22a2 79 VWDVNTGEMLNTLIHHCEAV-----------------------LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLV 135 (293)
T ss_dssp EEESSSCCEEEEECCCCSCE-----------------------EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEEC
T ss_pred cccccccccccccccccccc-----------------------ccccccccceeecccccceeEeecccccccccccccc
Confidence 99998766554443332211 222333446899999999999998876543322 122
Q ss_pred CCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhcccccccccc
Q 001248 616 GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA 695 (1114)
Q Consensus 616 ~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1114)
.+...+..+.+ ....+++++.|+.+++||..++ +.+..+.+
T Consensus 136 ~~~~~v~~~~~--~~~~~~~~s~d~~i~~~d~~~~-~~~~~~~~------------------------------------ 176 (293)
T d1p22a2 136 GHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTC-EFVRTLNG------------------------------------ 176 (293)
T ss_dssp CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTC-CEEEEEEC------------------------------------
T ss_pred cccccccccee--cccccccccCCCceeeecCCCC-cEEEEEcc------------------------------------
Confidence 23334444444 4567888888999999987665 21111110
Q ss_pred ccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceE
Q 001248 696 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH 775 (1114)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i 775 (1114)
T Consensus 177 -------------------------------------------------------------------------------- 176 (293)
T d1p22a2 177 -------------------------------------------------------------------------------- 176 (293)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccc
Q 001248 776 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMAT 854 (1114)
Q Consensus 776 ~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~ 854 (1114)
+...+..+. +++.++++++ ||+|++||+.+...+..
T Consensus 177 -----------------------------------------~~~~v~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 213 (293)
T d1p22a2 177 -----------------------------------------HKRGIACLQ--YRDRLVVSGSSDNTIRLWDIECGACLRV 213 (293)
T ss_dssp -----------------------------------------CSSCEEEEE--EETTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred -----------------------------------------ccccccccc--CCCCeEEEecCCCEEEEEecccceeeee
Confidence 222233333 3456777777 89999999999888888
Q ss_pred cCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc---------eEEEeecccccCeeEEEEcCCCCEEEEEeCCCc
Q 001248 855 FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD---------EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ 925 (1114)
Q Consensus 855 ~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~---------~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~ 925 (1114)
+.++...+..+ ++ ++.+|++|+.||.|++||+.+. ..+..+.+|.+.|++++| |+++|+|+|.||+
T Consensus 214 ~~~~~~~v~~~--~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~ 288 (293)
T d1p22a2 214 LEGHEELVRCI--RF-DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDT 288 (293)
T ss_dssp ECCCSSCEEEE--EC-CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSE
T ss_pred ecccceeeeec--cc-cceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCCE
Confidence 88888877654 45 6789999999999999998653 467888999999999999 4678999999999
Q ss_pred EEEEe
Q 001248 926 LCVWS 930 (1114)
Q Consensus 926 v~iwd 930 (1114)
|+|||
T Consensus 289 i~iWD 293 (293)
T d1p22a2 289 ILIWD 293 (293)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99997
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=2.2e-26 Score=247.78 Aligned_cols=276 Identities=10% Similarity=0.067 Sum_probs=206.1
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw 494 (1114)
++.||..+|++++|+| |++|+.||+|++||+.++ ..+|...|.+++|++++. +++++.|++|++|
T Consensus 8 ~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~--------~~~h~~~V~~~~~~~~~~---~~s~s~D~~v~~w 72 (287)
T d1pgua2 8 TISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM--------HQDHSNLIVSLDNSKAQE---YSSISWDDTLKVN 72 (287)
T ss_dssp EECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE--------ECCCCSCEEEEECCSTTC---CEEEETTTEEEET
T ss_pred EECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC--------CCCCCCCEEEEEecCCCe---EEEEeeccccccc
Confidence 5899999999999997 999999999999998763 357999999999997764 7899999999999
Q ss_pred eCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecc
Q 001248 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1114)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~ 574 (1114)
++...+ ....+..+++. +++. ++..+.++.+.+|+..+......+.....
T Consensus 73 ~~~~~~-------~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 122 (287)
T d1pgua2 73 GITKHE-------FGSQPKVASAN--NDGF-TAVLTNDDDLLILQSFTGDIIKSVRLNSP-------------------- 122 (287)
T ss_dssp TEEEEE-------CSSCEEEEEEC--SSSE-EEEEETTSEEEEEETTTCCEEEEEECSSC--------------------
T ss_pred cccccc-------cccceeeeeec--cCCc-eEEEeecccceeeeccceeeeeeccccce--------------------
Confidence 976432 23445566654 3434 44455677788998877665544332221
Q ss_pred cceeEEEecCCCCEEEEEeCC-CeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccc
Q 001248 575 RSLGVVQFDTTKNRFLAAGDD-FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL 653 (1114)
Q Consensus 575 ~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~ 653 (1114)
..+++++++.+++++.+ +.+++|++...+....+... +...+.+++|+|++.+|++|+.||.|++||+.++...
T Consensus 123 ----~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~ 197 (287)
T d1pgua2 123 ----GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTP-LRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVK 197 (287)
T ss_dssp ----EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred ----eeeeeccCcceeeeccccceeeeeeccccceeeeeeec-cCCceeEEEeccCccccccccccccccceeecccccc
Confidence 12334445567777765 57999999776665555432 3346899999999999999999999999998776321
Q ss_pred eeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEecc
Q 001248 654 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 733 (1114)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~ 733 (1114)
...+
T Consensus 198 ~~~~---------------------------------------------------------------------------- 201 (287)
T d1pgua2 198 TSRW---------------------------------------------------------------------------- 201 (287)
T ss_dssp ECCS----------------------------------------------------------------------------
T ss_pred cccc----------------------------------------------------------------------------
Confidence 1111
Q ss_pred CCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCC
Q 001248 734 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 813 (1114)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~ 813 (1114)
..|...|.+++|+|++...
T Consensus 202 --------------~~h~~~v~~~~~~p~~~~~----------------------------------------------- 220 (287)
T d1pgua2 202 --------------AFRTSKINAISWKPAEKGA----------------------------------------------- 220 (287)
T ss_dssp --------------CCCSSCEEEEEECCCC--------------------------------------------------
T ss_pred --------------cccccccceeeeccccccc-----------------------------------------------
Confidence 1267788999998876522
Q ss_pred CCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCC-CccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEc
Q 001248 814 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT-FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV 889 (1114)
Q Consensus 814 ~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~-~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~ 889 (1114)
..+.+++.++++|+ |++|++||+.+ .+.+..+.+|...|++++|+| ++ .|++++.||.|++|++
T Consensus 221 ----------~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~-~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 221 ----------NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp -------------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEE-TT-EEEEEETTSCEEEEEE
T ss_pred ----------ccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECC-CC-EEEEEECCCeEEEEEE
Confidence 22345778999999 99999999976 556677889999999999999 66 5788999999999996
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.95 E-value=1.4e-26 Score=264.48 Aligned_cols=366 Identities=9% Similarity=0.007 Sum_probs=244.1
Q ss_pred EEEEcCCCCeE-EEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCC
Q 001248 363 SMDFHPVQQTL-LLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR 441 (1114)
Q Consensus 363 ~v~~spdg~~l-l~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d 441 (1114)
.+.++.|.+.+ +++.+.||+|+|||+.+++.+.. +..| ..+..++|||||++|++++.|
T Consensus 23 ~~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~-------------------l~~g-~~~~~vafSPDGk~l~~~~~d 82 (426)
T d1hzua2 23 KQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKV-------------------IDTG-YAVHISRMSASGRYLLVIGRD 82 (426)
T ss_dssp SCCSCCCGGGEEEEEETTTTEEEEEETTTCSEEEE-------------------EECC-SSEEEEEECTTSCEEEEEETT
T ss_pred cccccCCCCeEEEEEEcCCCEEEEEECCCCcEEEE-------------------EeCC-CCeeEEEECCCCCEEEEEeCC
Confidence 34466665544 57788899999999999998874 4444 369999999999999999999
Q ss_pred CeEEEEEccCCceee--eeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeecc
Q 001248 442 HIVQIYSYHGGDEVR--QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHH 519 (1114)
Q Consensus 442 g~i~iwd~~~~~~~~--~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 519 (1114)
++|++||+.+++... ......+|.+.+.+++|+|||++ +++++..++++++||..++.++..+.+|...+..+.+.+
T Consensus 83 ~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~-l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 161 (426)
T d1hzua2 83 ARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRY-TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHP 161 (426)
T ss_dssp SEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEES
T ss_pred CCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCE-EEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecC
Confidence 999999999887432 22334567788889999999996 456677899999999999999999888877776666554
Q ss_pred CCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEe-CCCeE
Q 001248 520 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSI 598 (1114)
Q Consensus 520 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i 598 (1114)
.+. ...+..+.|+...+|....................+...+.+ ..+..+.++|++++++++. .+..+
T Consensus 162 ~~~-~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~g~~~~~a~~~~~~~ 231 (426)
T d1hzua2 162 EPR-VAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAA---------PFLADGGWDSSHRYFMTAANNSNKV 231 (426)
T ss_dssp CCC-EEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECC---------SSEEEEEECTTSCEEEEEETTCSEE
T ss_pred CCc-eeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccC---------CccEeeeECCCCcEEEeeeecccce
Confidence 443 345556666666665554433332222222211122222222 2556677788877777765 67789
Q ss_pred EEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEE---EEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCc
Q 001248 599 KFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA---VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTI 675 (1114)
Q Consensus 599 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~---~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (1114)
.+|+..+++.+................+..++...+ ..+.|+.+.+|+......
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~----------------------- 288 (426)
T d1hzua2 232 AVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNH----------------------- 288 (426)
T ss_dssp EEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTC-----------------------
T ss_pred eeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecccccc-----------------------
Confidence 999999999888776554433334444443332111 122344454444322200
Q ss_pred cchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceE
Q 001248 676 SPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKIS 755 (1114)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~ 755 (1114)
T Consensus 289 -------------------------------------------------------------------------------- 288 (426)
T d1hzua2 289 -------------------------------------------------------------------------------- 288 (426)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEE
Q 001248 756 RLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMS 835 (1114)
Q Consensus 756 ~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~ 835 (1114)
....+.... .+. +|...+..++|+||+++|++
T Consensus 289 ---------------------------------------------~~~~~~~~~-~l~--g~~~~v~~v~~sPdg~~l~v 320 (426)
T d1hzua2 289 ---------------------------------------------PQYAWKKVA-ELQ--GQGGGSLFIKTHPKSSHLYV 320 (426)
T ss_dssp ---------------------------------------------TTTBTSEEE-EEE--CSSSCCCCEECCTTCSEEEE
T ss_pred ---------------------------------------------ccccceEeE-EEe--cCCCceeEEEcCCCCceEEE
Confidence 000000000 011 26677788888888888885
Q ss_pred -------Ee-CCeEEEEEcCCCcccccc---------CCCCCCeEEEEEecCCCcEEE-EE----eCCCcEEEEEcccce
Q 001248 836 -------AS-GGKISLFNMMTFKTMATF---------MPPPPAATFLAFHPQDNNIIA-IG----MDDSSIQIYNVRVDE 893 (1114)
Q Consensus 836 -------~~-dg~i~iwd~~~~~~~~~~---------~~~~~~i~~l~~sp~d~~~la-~g----~~dg~v~iwd~~~~~ 893 (1114)
+. +++|+|||+.+++...++ ..+...|.+++||| ||++++ ++ +.+|.|+|||..+++
T Consensus 321 ~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSp-DGk~i~vs~~~~~~~~~~i~v~D~~T~k 399 (426)
T d1hzua2 321 DTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGKNDSSALVVVDDKTLK 399 (426)
T ss_dssp CCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECS-SSSEEEEEECCCTTSCCEEEEEETTTTE
T ss_pred eecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECC-CCCEEEEEEecCCCCCCeEEEEECCCCe
Confidence 33 689999999998876543 34566799999999 887663 32 468899999999999
Q ss_pred EEEeecccccCeeEEEEcCCCCEE
Q 001248 894 VKSKLKGHSKRITGLAFSHALNVL 917 (1114)
Q Consensus 894 ~~~~l~~h~~~V~~l~~s~d~~~l 917 (1114)
+...+.++. .++|+|++-
T Consensus 400 ~~~~i~~~~------~~tp~Gk~~ 417 (426)
T d1hzua2 400 LKAVVKDPR------LITPTGKFN 417 (426)
T ss_dssp EEEEECCTT------CCSEEEEEE
T ss_pred EEEEECCCC------ccCCCceEe
Confidence 999988775 345777664
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=2.7e-25 Score=239.35 Aligned_cols=234 Identities=18% Similarity=0.303 Sum_probs=185.5
Q ss_pred ccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCe
Q 001248 355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 434 (1114)
Q Consensus 355 ~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 434 (1114)
-.|...|+|++| ||++ ||||+.||+|+|||+.+++.+. .+.+|.+.|.+++| ++++
T Consensus 12 ~~~~~~V~c~~~--d~~~-l~sgs~Dg~i~vWd~~~~~~~~-------------------~l~~H~~~V~~v~~--~~~~ 67 (293)
T d1p22a2 12 SETSKGVYCLQY--DDQK-IVSGLRDNTIKIWDKNTLECKR-------------------ILTGHTGSVLCLQY--DERV 67 (293)
T ss_dssp CSSCCCEEEEEC--CSSE-EEEEESSSCEEEEESSSCCEEE-------------------EECCCSSCEEEEEC--CSSE
T ss_pred CCCCCCEEEEEE--cCCE-EEEEeCCCeEEEEECCCCcEEE-------------------EEecCCCCEeeeec--ccce
Confidence 348899999765 7885 9999999999999999998876 47899999999887 6889
Q ss_pred EEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcc---eeEeeccccC
Q 001248 435 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK---QYIFEGHEAP 511 (1114)
Q Consensus 435 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~h~~~ 511 (1114)
|++|+.|+.|++|++..+.... ....+.. ....+.+... .++++..++.+.+||..+... ...+..|...
T Consensus 68 l~s~s~D~~i~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (293)
T d1p22a2 68 IITGSSDSTVRVWDVNTGEMLN---TLIHHCE--AVLHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 140 (293)
T ss_dssp EEEEETTSCEEEEESSSCCEEE---EECCCCS--CEEEEECCTT--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSC
T ss_pred eecccccccccccccccccccc---ccccccc--cccccccccc--ceeecccccceeEeeccccccccccccccccccc
Confidence 9999999999999999987654 2322322 2334445555 588999999999999887654 3455678888
Q ss_pred EEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEE
Q 001248 512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 591 (1114)
Q Consensus 512 v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~ 591 (1114)
+..+.+.. ..+++++.|+.|++||+++.+....+..+...+..+.++ +..+++
T Consensus 141 v~~~~~~~----~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~-----------------------~~~l~~ 193 (293)
T d1p22a2 141 VNVVDFDD----KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR-----------------------DRLVVS 193 (293)
T ss_dssp EEEEEEET----TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE-----------------------TTEEEE
T ss_pred cccceecc----cccccccCCCceeeecCCCCcEEEEEcccccccccccCC-----------------------CCeEEE
Confidence 88777532 478899999999999999887777766666555544443 336999
Q ss_pred EeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 592 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 592 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
++.|+.|++||+.+.+.+.....+.. .+ ..+++++.+|++++.||.|++||+...
T Consensus 194 ~~~dg~i~i~d~~~~~~~~~~~~~~~--~v--~~~~~~~~~l~sg~~dg~i~iwd~~~~ 248 (293)
T d1p22a2 194 GSSDNTIRLWDIECGACLRVLEGHEE--LV--RCIRFDNKRIVSGAYDGKIKVWDLVAA 248 (293)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCSS--CE--EEEECCSSEEEEEETTSCEEEEEHHHH
T ss_pred ecCCCEEEEEecccceeeeeecccce--ee--eeccccceEEEEEcCCCEEEEEECCCC
Confidence 99999999999999999888876533 33 457778999999999999999998765
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.94 E-value=1.7e-25 Score=254.30 Aligned_cols=354 Identities=14% Similarity=0.095 Sum_probs=247.7
Q ss_pred EEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCC
Q 001248 373 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG 452 (1114)
Q Consensus 373 ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~ 452 (1114)
++++.+.+|+|.|||..+++.+.. +..| ..+..++|||||++|++++.|++|.+||+.++
T Consensus 34 ~~v~~~d~g~v~v~D~~t~~v~~~-------------------~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~ 93 (432)
T d1qksa2 34 FSVTLRDAGQIALIDGSTYEIKTV-------------------LDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMK 93 (432)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEE-------------------EECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSS
T ss_pred EEEEEcCCCEEEEEECCCCcEEEE-------------------EeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCC
Confidence 468899999999999999999874 3334 36999999999999999999999999999887
Q ss_pred ce--eeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccc-----------cCEEEEeecc
Q 001248 453 DE--VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE-----------APVYSVCPHH 519 (1114)
Q Consensus 453 ~~--~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~-----------~~v~~~~~~~ 519 (1114)
+. ...+....+|.+.+.+++|+|||++ ++++++.+++|++||..+++++..+..|. .....+.+++
T Consensus 94 ~~~~~~~i~~~~~~~~~~~s~~~SpDG~~-l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~ 172 (432)
T d1qksa2 94 EPTTVAEIKIGSEARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASH 172 (432)
T ss_dssp SCCEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECS
T ss_pred CceEEEEEecCCCCCCeEEecccCCCCCE-EEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECC
Confidence 63 2333344567778888899999996 46788899999999999999988876543 3344555544
Q ss_pred CCCce-EEEEEecCCeEEEEEcCCCCCeeeec-CCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEe-CCC
Q 001248 520 KENIQ-FIFSTALDGKIKAWLYDNLGSRVDYE-APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDF 596 (1114)
Q Consensus 520 ~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg 596 (1114)
+|. ++++...++.|.+||..+.+...... .....+. .+.++|+|+++++++ .++
T Consensus 173 --dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~---------------------~~~~spdg~~~~va~~~~~ 229 (432)
T d1qksa2 173 --YRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLH---------------------DGGLDGSHRYFITAANARN 229 (432)
T ss_dssp --SSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEE---------------------EEEECTTSCEEEEEEGGGT
T ss_pred --CCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccc---------------------cceECCCCCEEEEeccccc
Confidence 344 45667778999999987654332211 1222333 445555555666655 567
Q ss_pred eEEEEECCCcceEEEeccCC---CCCCcCeEEEcCCCCEEEEEe-CCCcEEEEEccCCccceeeccccccccccCCCCCC
Q 001248 597 SIKFWDMDSVQLLTSIDADG---GLPASPRIRFNKDGCLLAVST-NDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 672 (1114)
Q Consensus 597 ~i~iwd~~~~~~~~~~~~~~---~~~~v~~~~~s~d~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (1114)
.+.++|..+++.+..+.... +........+...+...++.. .++.+.+|+.....
T Consensus 230 ~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~--------------------- 288 (432)
T d1qksa2 230 KLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG--------------------- 288 (432)
T ss_dssp EEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT---------------------
T ss_pred eEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccccccc---------------------
Confidence 89999999988887765332 111222233333333333322 24555555432210
Q ss_pred CCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCcccccc
Q 001248 673 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 752 (1114)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 752 (1114)
. ..+..
T Consensus 289 ------------------------------------------------------------------------~--~~~~~ 294 (432)
T d1qksa2 289 ------------------------------------------------------------------------H--PDNAW 294 (432)
T ss_dssp ------------------------------------------------------------------------C--TTTBT
T ss_pred ------------------------------------------------------------------------c--ccccc
Confidence 0 11455
Q ss_pred ceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCE
Q 001248 753 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 832 (1114)
Q Consensus 753 ~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~ 832 (1114)
.+....+++++..+++++.++..++|..... ..|.....++++ ||++.
T Consensus 295 ~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~-------------------------------~~~~~~~~sv~v-pDg~~ 342 (432)
T d1qksa2 295 KILDSFPALGGGSLFIKTHPNSQYLYVDATL-------------------------------NPEAEISGSVAV-FDIKA 342 (432)
T ss_dssp SEEEEEECSCSCCCCEECCTTCSEEEEECTT-------------------------------CSSHHHHTCEEE-EEGGG
T ss_pred EEEEEEEcCCCCeEEEEecCCccceeecccC-------------------------------CCCCCeeeEEEE-Eechh
Confidence 6788899999998999999988898865311 013333445665 99999
Q ss_pred EEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEe-----CCCcEEEEEcccceEEEeeccc
Q 001248 833 VMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM-----DDSSIQIYNVRVDEVKSKLKGH 901 (1114)
Q Consensus 833 l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~-----~dg~v~iwd~~~~~~~~~l~~h 901 (1114)
+++++ |+++++|++.++. .+..|...+.+++||| ||+++++.. .+|.|.|||..++++...+++.
T Consensus 343 la~~s~d~~~k~w~~~~~~---~l~~~~~~v~~~~fS~-DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~ 413 (432)
T d1qksa2 343 MTGDGSDPEFKTLPIAEWA---GITEGQPRVVQGEFNK-DGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDE 413 (432)
T ss_dssp CCCSSSCCCEEEECHHHHH---TCCSSCCEEEEEEECT-TSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred hcccccCCceEeccccccc---ccCCCCCcEEEeEECC-CCCEEEEEEecCCCCCCcEEEEECCCceEEeEecCC
Confidence 99999 8999999986553 3345777899999999 888775543 5789999999999998888764
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.94 E-value=1.6e-26 Score=258.05 Aligned_cols=343 Identities=14% Similarity=0.081 Sum_probs=229.1
Q ss_pred eEEEEcC-CCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeC
Q 001248 362 MSMDFHP-VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS 440 (1114)
Q Consensus 362 ~~v~~sp-dg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~ 440 (1114)
..-.||| ||++ +|+++ +|.|++||+.++.... .+|...|.+++|||||++|++++.
T Consensus 6 ~~~~fSP~dG~~-~a~~~-~g~v~v~d~~~~~~~~---------------------~~~~~~v~~~~~spDg~~l~~~~~ 62 (360)
T d1k32a3 6 FAEDFSPLDGDL-IAFVS-RGQAFIQDVSGTYVLK---------------------VPEPLRIRYVRRGGDTKVAFIHGT 62 (360)
T ss_dssp GEEEEEECGGGC-EEEEE-TTEEEEECTTSSBEEE---------------------CSCCSCEEEEEECSSSEEEEEEEE
T ss_pred hcccccCCCCCE-EEEEE-CCeEEEEECCCCcEEE---------------------ccCCCCEEEEEECCCCCEEEEEEc
Confidence 3567999 9996 77765 6899999999877653 268899999999999999998775
Q ss_pred CC--eEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeec
Q 001248 441 RH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 518 (1114)
Q Consensus 441 dg--~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 518 (1114)
+. .|++||..+++.. .+..|...|.+++|+|||+ +|++++.++.+++|++.+++....+..|...+.+++|+
T Consensus 63 ~~g~~v~v~d~~~~~~~----~~~~~~~~v~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 136 (360)
T d1k32a3 63 REGDFLGIYDYRTGKAE----KFEENLGNVFAMGVDRNGK--FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTIS 136 (360)
T ss_dssp TTEEEEEEEETTTCCEE----ECCCCCCSEEEEEECTTSS--EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEEC
T ss_pred CCCCEEEEEECCCCcEE----EeeCCCceEEeeeeccccc--ccceeccccccccccccccceeeeeecccccccchhhc
Confidence 53 7999999987654 4778999999999999999 79999999999999999999988999898888888875
Q ss_pred cCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeE
Q 001248 519 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSI 598 (1114)
Q Consensus 519 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 598 (1114)
+ +|++|+.++.+... .+.+..++.+
T Consensus 137 p--dg~~la~~~~~~~~-----------------------------------------------------~~~~~~~~~~ 161 (360)
T d1k32a3 137 D--NSRFIAYGFPLKHG-----------------------------------------------------ETDGYVMQAI 161 (360)
T ss_dssp T--TSCEEEEEEEECSS-----------------------------------------------------TTCSCCEEEE
T ss_pred c--ceeeeeeecccccc-----------------------------------------------------ceeeccccce
Confidence 4 55677665432211 1223456778
Q ss_pred EEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccch
Q 001248 599 KFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPI 678 (1114)
Q Consensus 599 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (1114)
++|+..+++....... ...+..++|+|||+.|++++.++.+.+|+............. ...+ .+...
T Consensus 162 ~v~d~~~~~~~~~~~~---~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~-~~~~---------~~~~~ 228 (360)
T d1k32a3 162 HVYDMEGRKIFAATTE---NSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSK-PFVI---------PLIPG 228 (360)
T ss_dssp EEEETTTTEEEECSCS---SSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBE-EEEE---------ESSTT
T ss_pred eeeccccCceeeeccc---ccccccccccCCCCEEEEEeCCCceEcccccccceeeccccc-eEEE---------ecccC
Confidence 9999988776554432 235678999999999999999999999987554211110000 0000 00000
Q ss_pred hhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCC---CceeEEEeccCCCCccccccccCccccccceE
Q 001248 679 SAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESN---DKSKVWKLTELSEPNQCRSLRLPENLRATKIS 755 (1114)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~ 755 (1114)
. .......+++..+.++..+ ...++|.+.... .....+ ..+...+.
T Consensus 229 ~-------------------------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~ 277 (360)
T d1k32a3 229 S-------------------------PNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDP--GDYRMI----IPLESSIL 277 (360)
T ss_dssp C-------------------------CCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCC--BCEEEE----EECSSEEE
T ss_pred c-------------------------cccceECCCcCcccccceeecccccceeecccCc--CceeEe----eecCCCce
Confidence 0 0001111222222222211 112333332111 011111 01223333
Q ss_pred EEEEc---cCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCE
Q 001248 756 RLIFT---NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 832 (1114)
Q Consensus 756 ~l~~s---~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~ 832 (1114)
.+.+. +.+.+++.++.++.+++|++.. ++... +...|.+++|||||++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~----------------------~~~~~-------~~~~v~~~~~SpDG~~ 328 (360)
T d1k32a3 278 IYSVPVHGEFAAYYQGAPEKGVLLKYDVKT----------------------RKVTE-------VKNNLTDLRLSADRKT 328 (360)
T ss_dssp EEECCCCCSHHHHHHCCCCCEEEEEEETTT----------------------CCEEE-------EEEEEEEEEECTTSCE
T ss_pred EEEEEecCCCeeEEEecCCCCEEEEEECCC----------------------CeEEE-------ecCCcCEEEECCCCCE
Confidence 34433 3444567777788899888652 22211 4556889999999999
Q ss_pred EEEEe-CCeEEEEEcCCCccccccCCCCCC
Q 001248 833 VMSAS-GGKISLFNMMTFKTMATFMPPPPA 861 (1114)
Q Consensus 833 l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~ 861 (1114)
|++++ ||.|++||+.+++...++..+..+
T Consensus 329 l~~~~~Dg~i~v~d~~~~~~~~~~~~d~~~ 358 (360)
T d1k32a3 329 VMVRKDDGKIYTFPLEKPEDERTVETDKRP 358 (360)
T ss_dssp EEEEETTSCEEEEESSCTTSCEECCCCSSC
T ss_pred EEEEECCCeEEEEECCCCCcceEEEecccc
Confidence 99999 899999999998888777655444
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=3.7e-25 Score=244.14 Aligned_cols=294 Identities=11% Similarity=0.073 Sum_probs=213.4
Q ss_pred cccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEe
Q 001248 748 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 827 (1114)
Q Consensus 748 ~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s 827 (1114)
++|...|++++|+|++++|++++.||+|+||++..... ...+.. ..+|...|.+++|+
T Consensus 8 ~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~------------------~~~~~~----~~~h~~~V~~v~f~ 65 (342)
T d1yfqa_ 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK------------------NVDLLQ----SLRYKHPLLCCNFI 65 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT------------------EEEEEE----EEECSSCEEEEEEE
T ss_pred CCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCc------------------ceEEEE----ecCCCCCEEEEEEe
Confidence 45889999999999999999999999999999864211 001111 11388999999999
Q ss_pred eCC-CEEEEEe-CCeEEEEEcCCCccccccCCCCCCe-EEEEEecCCCcEEEEEeCCCcEEEEEcccceE----EEeecc
Q 001248 828 KND-SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAA-TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV----KSKLKG 900 (1114)
Q Consensus 828 ~d~-~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i-~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~----~~~l~~ 900 (1114)
+++ .+|++|+ ||.|++|+............+.... ....+.+ +...+++++.|+.+++||+.++.. ......
T Consensus 66 ~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~ 144 (342)
T d1yfqa_ 66 DNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKY-GDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS 144 (342)
T ss_dssp ESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEE-TTTEEEEEETTSEEEEECHHHHTTBCEEEEESCS
T ss_pred CCCCCEEEEcccccceeeeeccccccccccccccccccccccccc-ccccccccccccccceeeccccccceeeeccccc
Confidence 875 5788888 9999999999877766665554443 4455555 788999999999999999976432 233333
Q ss_pred c--ccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEE-ccCCcEEEE-EeCCeEE
Q 001248 901 H--SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF-HQDQIHFLV-VHETQLA 976 (1114)
Q Consensus 901 h--~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~f-spdg~~l~~-~~d~~i~ 976 (1114)
+ ......+.+.+++..+++++.|+.|++|++...+............ ..+....+ +.++..+++ +.|+.+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~s~dg~~~ 219 (342)
T d1yfqa_ 145 NNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLK-----YQIRDVALLPKEQEGYACSSIDGRVA 219 (342)
T ss_dssp SSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCS-----SCEEEEEECSGGGCEEEEEETTSEEE
T ss_pred ccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccc-----cceeeeEeecCCCCEEEeecCCCeEE
Confidence 3 2334566778889999999999999999998765433222211111 23344444 456777777 6899999
Q ss_pred EEEcCCCceeee-------------eecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCC
Q 001248 977 IFETTKLECVKQ-------------WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV 1043 (1114)
Q Consensus 977 iwd~~~~~~~~~-------------~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~ 1043 (1114)
+|+......... ....+|...|++++|+|++++||+|+.||.|+|||+.+++.+..+. ..|
T Consensus 220 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~------~~~ 293 (342)
T d1yfqa_ 220 VEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA------KFN 293 (342)
T ss_dssp EEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC------CCS
T ss_pred EEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEec------CCC
Confidence 999765432211 1123567789999999999999999999999999999999988765 111
Q ss_pred CCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1044 SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1044 ~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
... .++|+| ++++|++++.|+++++|......
T Consensus 294 ---~~~--~~~~s~-~~~~l~~a~sdd~~~~~~~~~~~ 325 (342)
T d1yfqa_ 294 ---EDS--VVKIAC-SDNILCLATSDDTFKTNAAIDQT 325 (342)
T ss_dssp ---SSE--EEEEEE-CSSEEEEEEECTHHHHCSSSCTT
T ss_pred ---CCE--EEEEEe-CCCEEEEEEcCCcEEEeeeeCCC
Confidence 133 456666 57899999999999998775543
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.93 E-value=1.2e-24 Score=247.27 Aligned_cols=362 Identities=9% Similarity=0.005 Sum_probs=250.3
Q ss_pred CCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcce--eEe--
Q 001248 430 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ--YIF-- 505 (1114)
Q Consensus 430 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~-- 505 (1114)
++.-++++.+.||+|.|||..+++.+. .+..| ..+..++|||||+ ++++++.|++|++||+.+++.. ..+
T Consensus 30 ~~~~~~v~~~d~g~v~v~D~~t~~v~~---~~~~g-~~~~~v~fSpDG~--~l~~~s~dg~v~~~d~~t~~~~~~~~i~~ 103 (432)
T d1qksa2 30 LENLFSVTLRDAGQIALIDGSTYEIKT---VLDTG-YAVHISRLSASGR--YLFVIGRDGKVNMIDLWMKEPTTVAEIKI 103 (432)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEE---EEECS-SCEEEEEECTTSC--EEEEEETTSEEEEEETTSSSCCEEEEEEC
T ss_pred CCcEEEEEEcCCCEEEEEECCCCcEEE---EEeCC-CCeeEEEECCCCC--EEEEEcCCCCEEEEEeeCCCceEEEEEec
Confidence 334445788899999999999999887 55555 3699999999999 6888899999999999887643 233
Q ss_pred -eccccCEEEEeeccCCCceEE-EEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEec
Q 001248 506 -EGHEAPVYSVCPHHKENIQFI-FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 583 (1114)
Q Consensus 506 -~~h~~~v~~~~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~ 583 (1114)
.+|.+.+.+..| ++||++| ++++.++.|++||..+.+....+..+...+....+.++++ ...+.++
T Consensus 104 ~~~~~~~~~s~~~--SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~----------~~~v~~s 171 (432)
T d1qksa2 104 GSEARSIETSKME--GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPR----------VAAILAS 171 (432)
T ss_dssp CSEEEEEEECCST--TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCC----------EEEEEEC
T ss_pred CCCCCCeEEeccc--CCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCc----------eeEEEEC
Confidence 345555555554 5677765 7788899999999999888777766655444455555543 3446677
Q ss_pred CCCCEE-EEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeC-CCcEEEEEccCCccceeeccccc
Q 001248 584 TTKNRF-LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN-DNGIKILATSDGIRLLRTFENLA 661 (1114)
Q Consensus 584 ~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~ 661 (1114)
+++..+ ++...++.|.+||..+++.......+.+ .....++|+|||+++++++. ++.+.+++..++ +....+....
T Consensus 172 ~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g-~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~-~~~~~~~~g~ 249 (432)
T d1qksa2 172 HYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAE-RFLHDGGLDGSHRYFITAANARNKLVVIDTKEG-KLVAIEDTGG 249 (432)
T ss_dssp SSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECC-SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSS
T ss_pred CCCCEEEEEEccCCeEEEEEccCCCcceEEEEccc-CccccceECCCCCEEEEeccccceEEEeecccc-eEEEEeccCc
Confidence 877665 4566789999999988775544332221 24678999999998877765 456888887766 3332221110
Q ss_pred cccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCcccc
Q 001248 662 YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCR 741 (1114)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~ 741 (1114)
..
T Consensus 250 ~~------------------------------------------------------------------------------ 251 (432)
T d1qksa2 250 QT------------------------------------------------------------------------------ 251 (432)
T ss_dssp SS------------------------------------------------------------------------------
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred ccccCccccccceEEEEEccCcceeeecc-cCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCC
Q 001248 742 SLRLPENLRATKISRLIFTNSGNAILALA-SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEA 820 (1114)
Q Consensus 742 ~~~~~~~~~~~~i~~l~~s~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~ 820 (1114)
.+............+....+.. .++.+.+|..... . . ..+...
T Consensus 252 -------~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~----------------------~-----~--~~~~~~ 295 (432)
T d1qksa2 252 -------PHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPE----------------------G-----H--PDNAWK 295 (432)
T ss_dssp -------BCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTT----------------------T-----C--TTTBTS
T ss_pred -------cccCcccceecCCCCceecccccCCceEEecccccc----------------------c-----c--cccccE
Confidence 0111222233333333333222 2567777754311 0 0 125667
Q ss_pred ccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeec
Q 001248 821 VPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK 899 (1114)
Q Consensus 821 v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~ 899 (1114)
+....+++++..+++++ +++.++|+..+... |......+++ | |++.|++++.|+.+++|++.++. .+.
T Consensus 296 v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~------~~~~~~sv~v-p-Dg~~la~~s~d~~~k~w~~~~~~---~l~ 364 (432)
T d1qksa2 296 ILDSFPALGGGSLFIKTHPNSQYLYVDATLNP------EAEISGSVAV-F-DIKAMTGDGSDPEFKTLPIAEWA---GIT 364 (432)
T ss_dssp EEEEEECSCSCCCCEECCTTCSEEEEECTTCS------SHHHHTCEEE-E-EGGGCCCSSSCCCEEEECHHHHH---TCC
T ss_pred EEEEEEcCCCCeEEEEecCCccceeecccCCC------CCCeeeEEEE-E-echhhcccccCCceEeccccccc---ccC
Confidence 88899999999888887 89999998765432 3333344555 7 89999999999999999987764 334
Q ss_pred ccccCeeEEEEcCCCCEEEEEe-----CCCcEEEEeCCCCcc
Q 001248 900 GHSKRITGLAFSHALNVLVSSG-----ADSQLCVWSSDGWEK 936 (1114)
Q Consensus 900 ~h~~~V~~l~~s~d~~~l~s~s-----~D~~v~iwd~~~~~~ 936 (1114)
.|...|.+++|||||++++.+. .++.|+|||..+.+.
T Consensus 365 ~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~ 406 (432)
T d1qksa2 365 EGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLEL 406 (432)
T ss_dssp SSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred CCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceE
Confidence 5777899999999999886553 468899999999654
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.93 E-value=6.6e-26 Score=252.98 Aligned_cols=284 Identities=9% Similarity=0.016 Sum_probs=207.0
Q ss_pred cccceEEEEEccCcceeeecccC--ceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEe
Q 001248 750 RATKISRLIFTNSGNAILALASN--AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 827 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~~d--g~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s 827 (1114)
|...|.+++|+|||+.|++++.+ ..+++|++. ++.... +. .|...+.+++|+
T Consensus 41 ~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~----------------------~~~~~~--~~--~~~~~v~~~~~s 94 (360)
T d1k32a3 41 EPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYR----------------------TGKAEK--FE--ENLGNVFAMGVD 94 (360)
T ss_dssp CCSCEEEEEECSSSEEEEEEEETTEEEEEEEETT----------------------TCCEEE--CC--CCCCSEEEEEEC
T ss_pred CCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECC----------------------CCcEEE--ee--CCCceEEeeeec
Confidence 66789999999999999887765 367777654 333332 22 388899999999
Q ss_pred eCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEe----------CCCcEEEEEcccceEEE
Q 001248 828 KNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM----------DDSSIQIYNVRVDEVKS 896 (1114)
Q Consensus 828 ~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~----------~dg~v~iwd~~~~~~~~ 896 (1114)
|||++|++++ ++.+++|++.+++....+..+...+.+++|+| +|++||.+. .++.+++||+.+++...
T Consensus 95 pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~ 173 (360)
T d1k32a3 95 RNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA 173 (360)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE
T ss_pred ccccccceeccccccccccccccceeeeeecccccccchhhcc-ceeeeeeeccccccceeeccccceeeeccccCceee
Confidence 9999999998 89999999999999888988999999999999 899988643 45579999999887654
Q ss_pred eecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccc--cccCCCCCCCCCCceEEEEccCCcEEEEE-eC-
Q 001248 897 KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRF--LQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE- 972 (1114)
Q Consensus 897 ~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~--~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d- 972 (1114)
+..|...+..++|+|||++|++++.|+.+.+|+........... ......+. ..+..+.|++++..++.+ .+
T Consensus 174 -~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~~~~~~~~~~~~ 249 (360)
T d1k32a3 174 -ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIP---GSPNPTKLVPRSMTSEAGEYDL 249 (360)
T ss_dssp -CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESST---TCCCGGGCCCGGGSCCCCCCCC
T ss_pred -ecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEeccc---CccccceECCCcCcccccceee
Confidence 44567788999999999999999999999999976643211100 00001111 233456678888776652 11
Q ss_pred ----CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCC---CCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCC
Q 001248 973 ----TQLAIFETTKLECVKQWVPRESSAPITHATFSCD---SQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSS 1045 (1114)
Q Consensus 973 ----~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~d---g~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~ 1045 (1114)
..+..++...+...... .+...+..+.+.+. +.++++++.++.|++||+.+++.... . +
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~-~-------~--- 315 (360)
T d1k32a3 250 NDMYKRSSPINVDPGDYRMII---PLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEV-K-------N--- 315 (360)
T ss_dssp TTGGGGCEECSCCCBCEEEEE---ECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEE-E-------E---
T ss_pred cccccceeecccCcCceeEee---ecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEe-c-------C---
Confidence 12444444444433322 23344455555444 44678888999999999999875421 1 1
Q ss_pred CCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCCC
Q 001248 1046 SNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEG 1082 (1114)
Q Consensus 1046 ~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~~ 1082 (1114)
. +. +++|+| ||++|++++.||+|++|++.+++.
T Consensus 316 ~-v~--~~~~Sp-DG~~l~~~~~Dg~i~v~d~~~~~~ 348 (360)
T d1k32a3 316 N-LT--DLRLSA-DRKTVMVRKDDGKIYTFPLEKPED 348 (360)
T ss_dssp E-EE--EEEECT-TSCEEEEEETTSCEEEEESSCTTS
T ss_pred C-cC--EEEECC-CCCEEEEEECCCeEEEEECCCCCc
Confidence 1 44 799999 799999999999999999999883
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.92 E-value=1.4e-23 Score=239.32 Aligned_cols=365 Identities=9% Similarity=0.033 Sum_probs=236.3
Q ss_pred EEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeee
Q 001248 470 DIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY 549 (1114)
Q Consensus 470 ~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 549 (1114)
.+.++.|.+.+++++.+.|++|+|||+.+++.+.++..|. .+..++|+ +||+++++++.|++|++||+.+.+.....
T Consensus 23 ~~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafS--PDGk~l~~~~~d~~v~vwd~~t~~~~~~~ 99 (426)
T d1hzua2 23 KQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMS--ASGRYLLVIGRDARIDMIDLWAKEPTKVA 99 (426)
T ss_dssp SCCSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEEC--TTSCEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred cccccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEEC--CCCCEEEEEeCCCCEEEEEccCCceeEEE
Confidence 3457777777678999999999999999999999999774 58889875 57789999999999999999987755432
Q ss_pred cC-CCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEE-EeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEc
Q 001248 550 EA-PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA-AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN 627 (1114)
Q Consensus 550 ~~-~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 627 (1114)
.. .......+.++ +.|+|+|+++++ +..++.+++||..++..+..+..+.. .+....+.
T Consensus 100 ~i~~~~~~~~~~~s-----------------~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~--~~~~~~~~ 160 (426)
T d1hzua2 100 EIKIGIEARSVESS-----------------KFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM--TVDTQTYH 160 (426)
T ss_dssp EEECCSEEEEEEEC-----------------CSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEE--CSSSCCEE
T ss_pred EEeCCCCCcceEEe-----------------eeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCC--Cccceeec
Confidence 21 11112222222 234556666654 55899999999999999888876643 45667777
Q ss_pred CCCCE-EEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCC
Q 001248 628 KDGCL-LAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNG 706 (1114)
Q Consensus 628 ~d~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (1114)
+++.. .++.+.|+...++.....
T Consensus 161 ~~~~~~~i~~s~d~~~~~~~~~~~-------------------------------------------------------- 184 (426)
T d1hzua2 161 PEPRVAAIIASHEHPEFIVNVKET-------------------------------------------------------- 184 (426)
T ss_dssp SCCCEEEEEECSSSSEEEEEETTT--------------------------------------------------------
T ss_pred CCCceeEEEECCCCCEEEEecCCC--------------------------------------------------------
Confidence 77764 345566666655543322
Q ss_pred CccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccC
Q 001248 707 DVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERN 786 (1114)
Q Consensus 707 ~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~ 786 (1114)
+.+.+++... +..+. +..
T Consensus 185 -----------------~~i~~~~~~~-----------------------------~~~~~---------~~~------- 202 (426)
T d1hzua2 185 -----------------GKVLLVNYKD-----------------------------IDNLT---------VTS------- 202 (426)
T ss_dssp -----------------TEEEEEECSS-----------------------------SSSCE---------EEE-------
T ss_pred -----------------CeEEEEEecc-----------------------------cccee---------eEE-------
Confidence 0111111100 00000 000
Q ss_pred CCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe--CCeEEEEEcCCCccccccCC--CCCCe
Q 001248 787 SSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMP--PPPAA 862 (1114)
Q Consensus 787 ~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~--~~~~i 862 (1114)
..+...+..++++|+++++.++. ++.+.+++..+++....... +....
T Consensus 203 ----------------------------~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (426)
T d1hzua2 203 ----------------------------IGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPG 254 (426)
T ss_dssp ----------------------------EECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCS
T ss_pred ----------------------------eccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCccccc
Confidence 00344566677788888777766 46688888877776654432 12222
Q ss_pred EEEEEecCCCc--EEEEEeCCCcEEEEEccc-------ceEEEeecccccCeeEEEEcCCCCEEEE-------EeCCCcE
Q 001248 863 TFLAFHPQDNN--IIAIGMDDSSIQIYNVRV-------DEVKSKLKGHSKRITGLAFSHALNVLVS-------SGADSQL 926 (1114)
Q Consensus 863 ~~l~~sp~d~~--~la~g~~dg~v~iwd~~~-------~~~~~~l~~h~~~V~~l~~s~d~~~l~s-------~s~D~~v 926 (1114)
....+...... ..+..+.|+.+.+|+... ++....+.+|...+..++|+||+++|++ ++.|++|
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv 334 (426)
T d1hzua2 255 RGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSV 334 (426)
T ss_dssp CCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCE
T ss_pred ceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEE
Confidence 23333331222 222334567777776543 4778899999999999999999999994 5668999
Q ss_pred EEEeCCCCccccccc-cccCCCCCCCCCCceEEEEccCCcEEEEE------eCCeEEEEEcCCCceeeeeecCCCCcCee
Q 001248 927 CVWSSDGWEKQKNRF-LQIPTGRTPTAQSDTRVQFHQDQIHFLVV------HETQLAIFETTKLECVKQWVPRESSAPIT 999 (1114)
Q Consensus 927 ~iwd~~~~~~~~~~~-~~~~~~~~~~~~~i~~v~fspdg~~l~~~------~d~~i~iwd~~~~~~~~~~~~~~h~~~v~ 999 (1114)
+|||+.+++...... ......+......+..++|||||++++++ .++.|+|||.++++....+. ++.
T Consensus 335 ~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~--~~~---- 408 (426)
T d1hzua2 335 AVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK--DPR---- 408 (426)
T ss_dssp EEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEEC--CTT----
T ss_pred EEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEEC--CCC----
Confidence 999999876533211 11111111122367889999999987552 36789999999999887765 221
Q ss_pred EEEECCCCCEE
Q 001248 1000 HATFSCDSQLV 1010 (1114)
Q Consensus 1000 ~l~~s~dg~~l 1010 (1114)
.++|+|+|-
T Consensus 409 --~~tp~Gk~~ 417 (426)
T d1hzua2 409 --LITPTGKFN 417 (426)
T ss_dssp --CCSEEEEEE
T ss_pred --ccCCCceEe
Confidence 346777764
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.87 E-value=1e-20 Score=208.87 Aligned_cols=325 Identities=10% Similarity=0.014 Sum_probs=211.2
Q ss_pred EEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeec-cccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeE
Q 001248 426 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 504 (1114)
Q Consensus 426 l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 504 (1114)
++|+++++||++++.+++|.|||+.+++.++ ++. .|...+.+++|+|||+. ++++++.++.|++||+.+++.+..
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~---t~~~~~~~~p~~l~~spDG~~-l~v~~~~~~~v~~~d~~t~~~~~~ 77 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYK---SCVMPDKFGPGTAMMAPDNRT-AYVLNNHYGDIYGIDLDTCKNTFH 77 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEE---EEECSSCCSSCEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEE
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEE---EEEcCCCCCcceEEECCCCCE-EEEEECCCCcEEEEeCccCeeeee
Confidence 5789999999999999999999999998765 443 45667899999999996 457788899999999999998877
Q ss_pred eeccccC------EEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeeccccee
Q 001248 505 FEGHEAP------VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG 578 (1114)
Q Consensus 505 ~~~h~~~------v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~ 578 (1114)
+...... +..++| ++||.++++++.+.....
T Consensus 78 ~~~~~~~~~~~~~~~~v~~--s~DG~~l~v~~~~~~~~~----------------------------------------- 114 (346)
T d1jmxb_ 78 ANLSSVPGEVGRSMYSFAI--SPDGKEVYATVNPTQRLN----------------------------------------- 114 (346)
T ss_dssp EESCCSTTEEEECSSCEEE--CTTSSEEEEEEEEEEECS-----------------------------------------
T ss_pred ecccccccccCCceEEEEE--ecCCCEEEEEecCCccee-----------------------------------------
Confidence 6532221 222332 233344444332211111
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeecc
Q 001248 579 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE 658 (1114)
Q Consensus 579 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 658 (1114)
......++.+.+|+..+++....+..+.....+..+.+++++.+++++ +.+.+|+..++ .....+.
T Consensus 115 ----------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~ 180 (346)
T d1jmxb_ 115 ----------DHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG---PDIYKMDVKTG-KYTVALP 180 (346)
T ss_dssp ----------SCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEES---SSEEEECTTTC-CEEEEEC
T ss_pred ----------eeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeC---CcceEEEccCC-CEEEEEe
Confidence 122446788999998887765544333222346677888888776643 56889998877 4444443
Q ss_pred ccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCccc-ccccCCCceeEEEeccCCCC
Q 001248 659 NLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPR-ITEESNDKSKVWKLTELSEP 737 (1114)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~d~~i~iw~~~~~~~~ 737 (1114)
.+.... .....+++..+ +....++.+.+++..
T Consensus 181 ~~~~~~------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 213 (346)
T d1jmxb_ 181 LRNWNR------------------------------------------KGYSAPDVLYFWPHQSPRHEFSMLYTI----- 213 (346)
T ss_dssp STTCCC------------------------------------------TTBCCCBCCCCCCCCCTTCEEEEEEEE-----
T ss_pred cCCCcc------------------------------------------ceEEeccccEEEEEecCCCceEeeeee-----
Confidence 222110 01111222222 222333333333321
Q ss_pred ccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCC
Q 001248 738 NQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP 817 (1114)
Q Consensus 738 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~ 817 (1114)
..+.+....+.+...++.+.+|++. ++......... +
T Consensus 214 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~--~ 250 (346)
T d1jmxb_ 214 -------------------ARFKDDKQDPATADLLYGYLSVDLK----------------------TGKTHTQEFAD--L 250 (346)
T ss_dssp -------------------EEC-------CCCEEEEEEEEEETT----------------------TCCEEEEEEEE--C
T ss_pred -------------------eeeccCceeEeeccCCceEEEEECC----------------------CCceEEEEeec--c
Confidence 1122233334445555666666654 33322221211 6
Q ss_pred CCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEe
Q 001248 818 EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 897 (1114)
Q Consensus 818 ~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~ 897 (1114)
...+..+.+++++.+++...++.|.+||..+++.+..+. +...+.+++|+| ||++|++++.||.|++||+.+++.+.+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~-DG~~l~v~~~d~~v~v~D~~t~~~i~~ 328 (346)
T d1jmxb_ 251 TELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDK-KGDKLYLGGTFNDLAVFNPDTLEKVKN 328 (346)
T ss_dssp SSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEE-CSSCCCEEEECS-SSSCEEEESBSSEEEEEETTTTEEEEE
T ss_pred cceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEc-CCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECccCCEEEE
Confidence 667888999999999998888899999999999888776 445699999999 899999999999999999999999988
Q ss_pred eccccc
Q 001248 898 LKGHSK 903 (1114)
Q Consensus 898 l~~h~~ 903 (1114)
+..+.+
T Consensus 329 i~~p~g 334 (346)
T d1jmxb_ 329 IKLPGG 334 (346)
T ss_dssp EECSSS
T ss_pred EECCCC
Confidence 875443
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.87 E-value=4.1e-20 Score=203.11 Aligned_cols=312 Identities=10% Similarity=0.039 Sum_probs=209.9
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCE
Q 001248 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 512 (1114)
Q Consensus 433 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 512 (1114)
+|+++++.|++|.|||+.+++.+..+ .+..+...+.+++|+|||+. ++++++.++.|.+||+.+++.+..+..+....
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i-~~~~~~~~~~~i~~spDg~~-l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~ 79 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVI-TIADAGPTPMVPMVAPGGRI-AYATVNKSESLVKIDLVTGETLGRIDLSTPEE 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEE-ECTTCTTCCCCEEECTTSSE-EEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEE-ECCCCCCCccEEEECCCCCE-EEEEECCCCeEEEEECCCCcEEEEEecCCCcc
Confidence 58999999999999999999876632 33445567889999999995 45678889999999999999998887654433
Q ss_pred -----EEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCC
Q 001248 513 -----YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 587 (1114)
Q Consensus 513 -----~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~ 587 (1114)
..++| +++++++++++.+.....|
T Consensus 80 ~~~~~~~v~~--s~dg~~l~~~~~~~~~~~~------------------------------------------------- 108 (337)
T d1pbyb_ 80 RVKSLFGAAL--SPDGKTLAIYESPVRLELT------------------------------------------------- 108 (337)
T ss_dssp EEECTTCEEE--CTTSSEEEEEEEEEEECSS-------------------------------------------------
T ss_pred cccceeeEEE--cCCCcEEEEeecCCcceee-------------------------------------------------
Confidence 23343 3444556555443333222
Q ss_pred EEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccC
Q 001248 588 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT 667 (1114)
Q Consensus 588 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 667 (1114)
.....++.+.+||..+++....+.... .+..++|+|||+++++++. .+.+||..++ .....+..+.....
T Consensus 109 --~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~-~~~~~~~~~~~~~~-- 178 (337)
T d1pbyb_ 109 --HFEVQPTRVALYDAETLSRRKAFEAPR---QITMLAWARDGSKLYGLGR--DLHVMDPEAG-TLVEDKPIQSWEAE-- 178 (337)
T ss_dssp --CEEECCCEEEEEETTTTEEEEEEECCS---SCCCEEECTTSSCEEEESS--SEEEEETTTT-EEEEEECSTTTTTT--
T ss_pred --eccccccceeeccccCCeEEEeccccC---CceEEEEcCCCCEEEEEcC--CcceeeeecC-cEEEEeecCCcccc--
Confidence 123457788999999999988887543 4788999999999999864 4778998887 34433322211100
Q ss_pred CCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccc-cccCCCceeEEEeccCCCCccccccccC
Q 001248 668 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRI-TEESNDKSKVWKLTELSEPNQCRSLRLP 746 (1114)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~i~iw~~~~~~~~~~~~~~~~~ 746 (1114)
....+++..+. .....+
T Consensus 179 ----------------------------------------~~~~~~~~~~~~~~~~~~---------------------- 196 (337)
T d1pbyb_ 179 ----------------------------------------TYAQPDVLAVWNQHESSG---------------------- 196 (337)
T ss_dssp ----------------------------------------TBCCCBCCCCCCCCTTTT----------------------
T ss_pred ----------------------------------------ceecCCcceeeccccccc----------------------
Confidence 00001111110 111111
Q ss_pred ccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEE
Q 001248 747 ENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL 826 (1114)
Q Consensus 747 ~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~ 826 (1114)
...+.......+.........++.+.+|++. ++........ .+...+..+++
T Consensus 197 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~--~~~~~~~~~~~ 248 (337)
T d1pbyb_ 197 ----VMATPFYTARKDIDPADPTAYRTGLLTMDLE----------------------TGEMAMREVR--IMDVFYFSTAV 248 (337)
T ss_dssp ----EEEEEEEEEBTTSCTTSGGGEEEEEEEEETT----------------------TCCEEEEEEE--ECSSCEEEEEE
T ss_pred ----eeeeeeeeeeeccceeeecccCccEEEEEcC----------------------CCcEEEEEec--CCCcceEEEEe
Confidence 1112222233344444555556666666654 2322221111 15666778899
Q ss_pred eeCCCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecc
Q 001248 827 SKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG 900 (1114)
Q Consensus 827 s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~ 900 (1114)
++++.+++++ ++.|++||+.+++.+..+. +...+.+++|+| ||++|++++.||+|++||..+++.+..++-
T Consensus 249 ~~~~~~~~~~-~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~-dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~ 319 (337)
T d1pbyb_ 249 NPAKTRAFGA-YNVLESFDLEKNASIKRVP-LPHSYYSVNVST-DGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp CTTSSEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred cccceEEEEc-cccEEEEECCCCcEEEEEc-CCCCEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence 9999988655 6899999999999888876 556789999999 999999999999999999999998888754
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.86 E-value=1.4e-20 Score=206.99 Aligned_cols=292 Identities=11% Similarity=0.075 Sum_probs=201.3
Q ss_pred CEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEE-EEeCCCcEEEEEccCCccceeeccccccccc
Q 001248 587 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA-VSTNDNGIKILATSDGIRLLRTFENLAYDAS 665 (1114)
Q Consensus 587 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 665 (1114)
+++++++.|+.|++||+.+++.+..+..+.....+.+++|+|||++++ +++.++.|.+||+.++ +.+..+..+...
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~-~~~~~~~~~~~~-- 78 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG-ETLGRIDLSTPE-- 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC-CEEEEEECCBTT--
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCC-cEEEEEecCCCc--
Confidence 379999999999999999999999998765555678999999999874 5678899999999988 443333221110
Q ss_pred cCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCcccccccc
Q 001248 666 RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL 745 (1114)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~ 745 (1114)
T Consensus 79 -------------------------------------------------------------------------------- 78 (337)
T d1pbyb_ 79 -------------------------------------------------------------------------------- 78 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEE
Q 001248 746 PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA 825 (1114)
Q Consensus 746 ~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~ 825 (1114)
.+...+..++|+|+++.++++..+.....|..
T Consensus 79 ---~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~--------------------------------------------- 110 (337)
T d1pbyb_ 79 ---ERVKSLFGAALSPDGKTLAIYESPVRLELTHF--------------------------------------------- 110 (337)
T ss_dssp ---EEEECTTCEEECTTSSEEEEEEEEEEECSSCE---------------------------------------------
T ss_pred ---ccccceeeEEEcCCCcEEEEeecCCcceeeec---------------------------------------------
Confidence 01223345788888888877766544332211
Q ss_pred EeeCCCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCe
Q 001248 826 LSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI 905 (1114)
Q Consensus 826 ~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V 905 (1114)
...++.+.+||..+++....+.. ...+..++|+| +++++++++. .+.+||..+++....+..+...
T Consensus 111 ---------~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~- 176 (337)
T d1pbyb_ 111 ---------EVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWE- 176 (337)
T ss_dssp ---------EECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEESS--SEEEEETTTTEEEEEECSTTTT-
T ss_pred ---------cccccceeeccccCCeEEEeccc-cCCceEEEEcC-CCCEEEEEcC--CcceeeeecCcEEEEeecCCcc-
Confidence 11245677777777766666653 34466777777 6777776653 3667777777766655433221
Q ss_pred eEEEEcCCC------------------------CEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEc
Q 001248 906 TGLAFSHAL------------------------NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH 961 (1114)
Q Consensus 906 ~~l~~s~d~------------------------~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fs 961 (1114)
....+++++ .....++.++.+.+|++.++......... + ...+..+.++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~ 249 (337)
T d1pbyb_ 177 AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI----M---DVFYFSTAVN 249 (337)
T ss_dssp TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE----C---SSCEEEEEEC
T ss_pred ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecC----C---CcceEEEEec
Confidence 111222221 11222233456888888876543221111 1 1356788999
Q ss_pred cCCcEEEEEeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeC
Q 001248 962 QDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 962 pdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
+++.++++. ++.+++||+.+++.+..+. +...+.+++|+|||++|++++.|+.|+|||..+++.+.++.
T Consensus 250 ~~~~~~~~~-~~~i~v~d~~~~~~~~~~~---~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~ 318 (337)
T d1pbyb_ 250 PAKTRAFGA-YNVLESFDLEKNASIKRVP---LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp TTSSEEEEE-ESEEEEEETTTTEEEEEEE---CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred ccceEEEEc-cccEEEEECCCCcEEEEEc---CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEE
Confidence 999988764 6899999999999998875 35678999999999999999999999999999999999887
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.86 E-value=1.7e-19 Score=194.49 Aligned_cols=198 Identities=13% Similarity=0.101 Sum_probs=151.1
Q ss_pred cEEEEeeCCCEEEEEe--CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcE-EEEEeCCCcEEEEEcccceEEEee
Q 001248 822 PCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI-IAIGMDDSSIQIYNVRVDEVKSKL 898 (1114)
Q Consensus 822 ~~v~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~-la~g~~dg~v~iwd~~~~~~~~~l 898 (1114)
..+++++++.++++.. ++.+.+|+..+++....+..+ ....+++|+| ++.. ++++..++.+.+|+..+++.+..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-dg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (301)
T d1l0qa2 77 QGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVINTV 154 (301)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cccccccccccccccccccceeeecccccceeeeecccc-ccceEEEeec-CCCeeeeeeccccceeeeeccccceeeec
Confidence 4566667777655554 578889999888877777644 5678999999 5554 456667889999999999988887
Q ss_pred cccccCeeEEEEcCCCCEEEEEeCC-CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-Ee---CC
Q 001248 899 KGHSKRITGLAFSHALNVLVSSGAD-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VH---ET 973 (1114)
Q Consensus 899 ~~h~~~V~~l~~s~d~~~l~s~s~D-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~---d~ 973 (1114)
..+ ..+..++++++++.+++++.+ +.+.+|+....+... ..... ..+..++|+++|..+++ +. ++
T Consensus 155 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~----~~~~~~~~~~~g~~~~v~~~~~~~~ 224 (301)
T d1l0qa2 155 SVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVID-----TVKVE----AAPSGIAVNPEGTKAYVTNVDKYFN 224 (301)
T ss_dssp ECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE-----EEECS----SEEEEEEECTTSSEEEEEEECSSCC
T ss_pred ccC-CCceEEEeeccccceeeecccccccccccccceeeee-----ccccc----CCcceeeccccccccccccccceee
Confidence 755 457889999999998888766 556677776643221 11111 24578999999999876 33 35
Q ss_pred eEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEE-EEEEcCCeEEEEEcCCCeeeEEeC
Q 001248 974 QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLV-YACFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 974 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~s~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
.|.+||+.+++.+..+.. ...+.+++|+|||++| ++++.|+.|+|||+.+++++.++.
T Consensus 225 ~v~v~D~~t~~~~~~~~~---~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~ 283 (301)
T d1l0qa2 225 TVSMIDTGTNKITARIPV---GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283 (301)
T ss_dssp EEEEEETTTTEEEEEEEC---CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred eeeeeecCCCeEEEEEcC---CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence 799999999999887753 4568999999999987 466678999999999999998876
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.86 E-value=1.5e-20 Score=207.60 Aligned_cols=330 Identities=10% Similarity=-0.005 Sum_probs=218.1
Q ss_pred EecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEE-EEeCCCcEEEEEccCCccceeeccc
Q 001248 581 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA-VSTNDNGIKILATSDGIRLLRTFEN 659 (1114)
Q Consensus 581 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~ 659 (1114)
+++++++++++++.++.|.+||+.+++.+.++..+.. ....+++|+|||++++ ++..++.|.+||+.++ +....+..
T Consensus 3 a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~-~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~-~~~~~~~~ 80 (346)
T d1jmxb_ 3 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK-FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC-KNTFHANL 80 (346)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSC-CSSCEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEES
T ss_pred cCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCC-CCcceEEECCCCCEEEEEECCCCcEEEEeCccC-eeeeeecc
Confidence 4667777999999999999999999999998875432 2467999999999875 4557899999999888 33333221
Q ss_pred cccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCcc
Q 001248 660 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ 739 (1114)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~ 739 (1114)
....
T Consensus 81 ~~~~---------------------------------------------------------------------------- 84 (346)
T d1jmxb_ 81 SSVP---------------------------------------------------------------------------- 84 (346)
T ss_dssp CCST----------------------------------------------------------------------------
T ss_pred cccc----------------------------------------------------------------------------
Confidence 1000
Q ss_pred ccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCC
Q 001248 740 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE 819 (1114)
Q Consensus 740 ~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~ 819 (1114)
......+..++|+|||++++++..+.....|.... ....+.+|+..++....... ......
T Consensus 85 --------~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~~~~-~~~~~~ 145 (346)
T d1jmxb_ 85 --------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVV----------KPPRLEVFSTADGLEAKPVR-TFPMPR 145 (346)
T ss_dssp --------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEE----------CCCEEEEEEGGGGGGBCCSE-EEECCS
T ss_pred --------cccCCceEEEEEecCCCEEEEEecCCcceeeeecc----------CcceEEEEecccceeeeEEE-eeeccC
Confidence 00112344678899998887766432222111100 00012223333333221100 001234
Q ss_pred CccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcE-EEEEeCCCcEEEEEcccceEEEee
Q 001248 820 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI-IAIGMDDSSIQIYNVRVDEVKSKL 898 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~-la~g~~dg~v~iwd~~~~~~~~~l 898 (1114)
.+..+.++++++.++. ++.+.+|++.+++.+..+..+ .....+.++| ++.. ++.+..++.+.+++..
T Consensus 146 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-------- 213 (346)
T d1jmxb_ 146 QVYLMRAADDGSLYVA--GPDIYKMDVKTGKYTVALPLR-NWNRKGYSAP-DVLYFWPHQSPRHEFSMLYTI-------- 213 (346)
T ss_dssp SCCCEEECTTSCEEEE--SSSEEEECTTTCCEEEEECST-TCCCTTBCCC-BCCCCCCCCCTTCEEEEEEEE--------
T ss_pred ceEEEEecCCCEEEEe--CCcceEEEccCCCEEEEEecC-CCccceEEec-cccEEEEEecCCCceEeeeee--------
Confidence 4566777777776654 356899999998888877654 3456677888 5544 4445555566655432
Q ss_pred cccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEE
Q 001248 899 KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIF 978 (1114)
Q Consensus 899 ~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iw 978 (1114)
..+......++++..+..+.+|++.++........ .+. ..+..+.+++++.+++...++.+.+|
T Consensus 214 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~v~v~ 277 (346)
T d1jmxb_ 214 ---------ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA----DLT---ELYFTGLRSPKDPNQIYGVLNRLAKY 277 (346)
T ss_dssp ---------EEC-------CCCEEEEEEEEEETTTCCEEEEEEE----ECS---SCEEEEEECSSCTTEEEEEESEEEEE
T ss_pred ---------eeeccCceeEeeccCCceEEEEECCCCceEEEEee----ccc---ceeEEEEEeCCCCEEEEecCCeEEEE
Confidence 12333445566777788899999988654332111 111 25678899999999988778899999
Q ss_pred EcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCC
Q 001248 979 ETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAG 1042 (1114)
Q Consensus 979 d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~ 1042 (1114)
|..+++.+..+.. ...+.+++|||||++|++++.|+.|+|||+.+++.+.++. +|.|
T Consensus 278 d~~~~~~~~~~~~---~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~----~p~g 334 (346)
T d1jmxb_ 278 DLKQRKLIKAANL---DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK----LPGG 334 (346)
T ss_dssp ETTTTEEEEEEEC---SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE----CSSS
T ss_pred ECCCCcEEEEEcC---CCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEE----CCCC
Confidence 9999999888753 4579999999999999999999999999999999999988 5555
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.85 E-value=4.3e-19 Score=191.32 Aligned_cols=254 Identities=14% Similarity=0.116 Sum_probs=194.1
Q ss_pred eEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE-EEeCCCeEEEEEcc
Q 001248 372 TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG-VAYSRHIVQIYSYH 450 (1114)
Q Consensus 372 ~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la-s~~~dg~i~iwd~~ 450 (1114)
|+.++++.|++|.|||+++++.+... . ....+..++|||||++|+ +++.++.|++||+.
T Consensus 3 ~~yV~~~~~~~v~v~D~~t~~~~~~i-------------------~-~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~ 62 (301)
T d1l0qa2 3 FAYIANSESDNISVIDVTSNKVTATI-------------------P-VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (301)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEE-------------------E-CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEEEECCCCEEEEEECCCCeEEEEE-------------------E-CCCCceEEEEeCCCCEEEEEECCCCEEEEEECC
Confidence 56678889999999999999877642 1 223578999999999885 56678999999999
Q ss_pred CCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEe
Q 001248 451 GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA 530 (1114)
Q Consensus 451 ~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~ 530 (1114)
+++.+. .+..|. .+..++|++++.. +++++..++.+.+|+..+++....+..+ ....+++++++.. .+++++.
T Consensus 63 t~~~~~---~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~-~~~~~~~ 135 (301)
T d1l0qa2 63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGK-KLYVTNN 135 (301)
T ss_dssp TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSS-EEEEEET
T ss_pred CCceee---eeeccc-ccccccccccccc-ccccccccceeeecccccceeeeecccc-ccceEEEeecCCC-eeeeeec
Confidence 998766 455554 4689999999996 5677888899999999999988888755 4566777655432 3445666
Q ss_pred cCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecc---------------------cceeEEEecCCCCEE
Q 001248 531 LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK---------------------RSLGVVQFDTTKNRF 589 (1114)
Q Consensus 531 ~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~---------------------~~v~~~~~~~~~~~l 589 (1114)
.++.+.+|+..+......+... ..+..+.+++++..++....+ .....+.++++++.+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 214 (301)
T d1l0qa2 136 GDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKA 214 (301)
T ss_dssp TTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEE
T ss_pred cccceeeeeccccceeeecccC-CCceEEEeeccccceeeecccccccccccccceeeeecccccCCcceeecccccccc
Confidence 7889999999887766665544 346778888888755544322 123446788999888
Q ss_pred EEEe---CCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEE-EEEeCCCcEEEEEccCCccceeec
Q 001248 590 LAAG---DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL-AVSTNDNGIKILATSDGIRLLRTF 657 (1114)
Q Consensus 590 ~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l-~~~~~dg~i~iwd~~~~~~~~~~~ 657 (1114)
+.++ .++.|++||..+++.+..+..+. .+.+++|+|||++| ++++.++.|++||+.++ +.+..+
T Consensus 215 ~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~---~~~~va~spdg~~l~va~~~~~~i~v~D~~t~-~~~~~~ 282 (301)
T d1l0qa2 215 YVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFCNTVSVIDTATN-TITATM 282 (301)
T ss_dssp EEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEE
T ss_pred ccccccceeeeeeeeecCCCeEEEEEcCCC---CEEEEEEeCCCCEEEEEECCCCeEEEEECCCC-eEEEEE
Confidence 7654 34789999999999988887543 46899999999987 56778999999999998 555554
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.84 E-value=2.5e-18 Score=191.89 Aligned_cols=331 Identities=9% Similarity=0.007 Sum_probs=213.4
Q ss_pred cCCCCceEEEEcCCCCeEEEEE----ecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCC
Q 001248 356 NQGSSPMSMDFHPVQQTLLLVG----TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 431 (1114)
Q Consensus 356 ~h~~~v~~v~~spdg~~ll~tg----~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd 431 (1114)
.+..++..++++|||++++++. +..+.|.+||.++++.+.. +..+. ...++||||
T Consensus 18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~~~--~~~~a~SpD 76 (373)
T d2madh_ 18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGF--LPNPVAAHS 76 (373)
T ss_pred cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEE-------------------EeCCC--CccEEEcCC
Confidence 4788899999999999865552 2346799999999988763 33333 236999999
Q ss_pred CCeEEEEe----------CCCeEEEEEccCCceeeeeEeeccccCC-------eeEEEecCCCCeeEEEEecCCCCEEEE
Q 001248 432 GSLFGVAY----------SRHIVQIYSYHGGDEVRQHLEIDAHVGG-------VNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1114)
Q Consensus 432 g~~las~~----------~dg~i~iwd~~~~~~~~~~~~l~~h~~~-------V~~v~~s~d~~~~~l~s~~~d~~i~iw 494 (1114)
|++|++++ .++.|.+||..+++.+. .+..+... ...+.|+++++.+++.....++.+.+|
T Consensus 77 G~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~---~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~ 153 (373)
T d2madh_ 77 GSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIA---DIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLV 153 (373)
T ss_pred CCEEEEEeecCCcccccccceEEEEEECCCCcEEE---EEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEe
Confidence 99999875 35789999999998765 33333332 256899999997556666677889999
Q ss_pred eCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecc
Q 001248 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1114)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~ 574 (1114)
+...++..... ....++.+++... ..+++.+.|+.+.+|+............... +.+. .
T Consensus 154 ~~~~~~~~~~~----~~~~~~~~s~~g~-~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~--------~~~~-------~ 213 (373)
T d2madh_ 154 VQGGSSDDQLL----SSPTCYHIHPGAP-STFYLLCAQGGLAKTDHAGGAAGAGLVGAML--------TAAQ-------N 213 (373)
T ss_pred eccCCeEEEEe----ccceeEEEecCCC-cEEEEEcCCCeEEEEEcCCceeeEEEeeecc--------ccCc-------c
Confidence 98877655443 3445666655543 4667888999999999887655443221110 0000 0
Q ss_pred cceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccce
Q 001248 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 654 (1114)
Q Consensus 575 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~ 654 (1114)
.......+++++ .++..+.++.+.+|+...+...................+.
T Consensus 214 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 265 (373)
T d2madh_ 214 LLTQPAQANKSG-RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWR--------------------------- 265 (373)
T ss_pred ceeeeEEECCCc-eEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeec---------------------------
Confidence 001112222222 3555667788888887654332221111000000000000
Q ss_pred eeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccC
Q 001248 655 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 734 (1114)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~ 734 (1114)
T Consensus 266 -------------------------------------------------------------------------------- 265 (373)
T d2madh_ 266 -------------------------------------------------------------------------------- 265 (373)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCC
Q 001248 735 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 814 (1114)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~ 814 (1114)
......+++++++..++.
T Consensus 266 ----------------~~~~~~~~~~~d~~~~~~---------------------------------------------- 283 (373)
T d2madh_ 266 ----------------PGGWQQVAYLKSSDGIYL---------------------------------------------- 283 (373)
T ss_pred ----------------cCcceeeEEecCCCeEEE----------------------------------------------
Confidence 011123344444443221
Q ss_pred CCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCc--EEEEEeCCCcEEEEEccc
Q 001248 815 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN--IIAIGMDDSSIQIYNVRV 891 (1114)
Q Consensus 815 ~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~--~la~g~~dg~v~iwd~~~ 891 (1114)
+..++..++... ++.+.+||..+++.+..+. +...+..++|+| ||+ ++++++.|++|++||+.+
T Consensus 284 -----------~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~sp-DG~~~l~vt~~~d~~v~v~D~~t 350 (373)
T d2madh_ 284 -----------LTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGA 350 (373)
T ss_pred -----------ecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECC-CCCEEEEEEeCCCCeEEEEECCC
Confidence 122333444444 7889999999999888776 556789999999 776 457889999999999999
Q ss_pred ceEEEeecccccCeeEEEEcCC
Q 001248 892 DEVKSKLKGHSKRITGLAFSHA 913 (1114)
Q Consensus 892 ~~~~~~l~~h~~~V~~l~~s~d 913 (1114)
++.+..+.+|....+.|++.++
T Consensus 351 g~~~~~~~~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 351 GDQDQSTVELGSGPQVLSVMNE 372 (373)
T ss_pred CCEEEEECCCCCCCcEEEEecC
Confidence 9999999988888888887654
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.76 E-value=4.3e-16 Score=173.45 Aligned_cols=304 Identities=8% Similarity=-0.064 Sum_probs=203.6
Q ss_pred EEEecCCCCEEEEE-----eCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeC----------CCcEE
Q 001248 579 VVQFDTTKNRFLAA-----GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN----------DNGIK 643 (1114)
Q Consensus 579 ~~~~~~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~----------dg~i~ 643 (1114)
.++++|+++.+++. +..+.|++||..+++.+..+..+. ...++|+|||++|+++.. ++.|.
T Consensus 25 ~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~----~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~ 100 (373)
T d2madh_ 25 DEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF----LPNPVAAHSGSEFALASTSFSRIAKGKRTDYVE 100 (373)
T ss_pred ccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCC----CccEEEcCCCCEEEEEeecCCcccccccceEEE
Confidence 33444444455443 345679999999999999886542 347999999999998753 56788
Q ss_pred EEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCC
Q 001248 644 ILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESN 723 (1114)
Q Consensus 644 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 723 (1114)
+||..++ +....+..+..... .
T Consensus 101 v~D~~t~-~~~~~~~~~~~~~~----------------------------------------------------~----- 122 (373)
T d2madh_ 101 VFDPVTF-LPIADIELPDAPRF----------------------------------------------------D----- 122 (373)
T ss_pred EEECCCC-cEEEEEecCCccee----------------------------------------------------E-----
Confidence 8888877 33333322111000 0
Q ss_pred CceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeeccc--CceEEEEeecccccCCCCCccccccccccC
Q 001248 724 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS--NAIHLLWKWQRTERNSSGKATASVAPQLWQ 801 (1114)
Q Consensus 724 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~ 801 (1114)
.......+.|+++++.++.... ++.+.+|+..
T Consensus 123 --------------------------~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~-------------------- 156 (373)
T d2madh_ 123 --------------------------VGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQG-------------------- 156 (373)
T ss_pred --------------------------eccCCCcEEEEeCCCcEEEEEEcCCCceEEeecc--------------------
Confidence 0011235778888887655443 3455555433
Q ss_pred CCCCccccccCCCCCCCCCccEEEEeeCCCEEE-EEe-CCeEEEEEcCCCccccccCCC------CCCeEEEEEecCCCc
Q 001248 802 PPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM-SAS-GGKISLFNMMTFKTMATFMPP------PPAATFLAFHPQDNN 873 (1114)
Q Consensus 802 ~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~-~~~-dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~sp~d~~ 873 (1114)
.+.... +.....++.++++++.+. +.+ |+++.+|+..++........+ ......+.+++ ++.
T Consensus 157 --~~~~~~-------~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 226 (373)
T d2madh_ 157 --GSSDDQ-------LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANK-SGR 226 (373)
T ss_pred --CCeEEE-------EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECC-Cce
Confidence 333222 344567889999998664 444 899999999887766554322 22234555655 554
Q ss_pred EEEEEeCCCcEEEEEcccceE--EEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCC
Q 001248 874 IIAIGMDDSSIQIYNVRVDEV--KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPT 951 (1114)
Q Consensus 874 ~la~g~~dg~v~iwd~~~~~~--~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 951 (1114)
++..+.++.+++|+..++.. +..+..+......+.+.|.+...+..+.|+....+-
T Consensus 227 -~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--------------------- 284 (373)
T d2madh_ 227 -IVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLL--------------------- 284 (373)
T ss_pred -EEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEe---------------------
Confidence 45566789999999988654 344555666677777887777777777776543332
Q ss_pred CCCceEEEEccCCcEEEE-EeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCE--EEEEEcCCeEEEEEcCCCe
Q 001248 952 AQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL--VYACFLDATVCVFSAANLK 1028 (1114)
Q Consensus 952 ~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~--l~s~s~Dg~I~vwd~~~~~ 1028 (1114)
..++..++. ..++.+.+||..+++.+..+. +...+.+++|||||+. +++++.|+.|+|||+.+++
T Consensus 285 ---------~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~---~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~ 352 (373)
T d2madh_ 285 ---------TSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS---LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred ---------cCCCceEEeecCCCeEEEEECCCCcEEEEec---CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC
Confidence 222333444 577889999999999988774 4567899999999985 4678899999999999999
Q ss_pred eeEEeC
Q 001248 1029 LRCRIN 1034 (1114)
Q Consensus 1029 ~~~~~~ 1034 (1114)
.+.++.
T Consensus 353 ~~~~~~ 358 (373)
T d2madh_ 353 QDQSTV 358 (373)
T ss_pred EEEEEC
Confidence 999887
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.76 E-value=2.4e-17 Score=182.32 Aligned_cols=245 Identities=10% Similarity=-0.022 Sum_probs=146.2
Q ss_pred CceEEEEcCCCCeEEEEE----ecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeE
Q 001248 360 SPMSMDFHPVQQTLLLVG----TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 435 (1114)
Q Consensus 360 ~v~~v~~spdg~~ll~tg----~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 435 (1114)
++.-.+.+|||++++++. ..+++|.+||..+++.+.. +..+ .+..++|||||++|
T Consensus 3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~g--~~~~~a~SpDg~~l 61 (355)
T d2bbkh_ 3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGM-------------------IDGG--FLPNPVVADDGSFI 61 (355)
T ss_dssp CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEE-------------------EEEC--SSCEEEECTTSSCE
T ss_pred CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEE-------------------EECC--CCCceEEcCCCCEE
Confidence 344456789999865553 2355799999999988763 2222 34479999999999
Q ss_pred EEEe----------CCCeEEEEEccCCceeeeeEeecccc----CCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcc
Q 001248 436 GVAY----------SRHIVQIYSYHGGDEVRQHLEIDAHV----GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 501 (1114)
Q Consensus 436 as~~----------~dg~i~iwd~~~~~~~~~~~~l~~h~----~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 501 (1114)
++++ .|+.|++||..+++.+........+. .....++|+++++.++++..+.+..+.+|+..+++.
T Consensus 62 ~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~ 141 (355)
T d2bbkh_ 62 AHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF 141 (355)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred EEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcE
Confidence 8753 47889999999998776432222222 234678999999975555667778899999999998
Q ss_pred eeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEE
Q 001248 502 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581 (1114)
Q Consensus 502 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~ 581 (1114)
+..+..+...... . ... ...++.+.|+...++.................. .....+....
T Consensus 142 ~~~~~~~~~~~~~-~--~~~--~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~ 201 (355)
T d2bbkh_ 142 KRMLDVPDCYHIF-P--TAP--DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP---------------EDEFLINHPA 201 (355)
T ss_dssp EEEEECCSEEEEE-E--EET--TEEEEEETTSCEEEEECCSSSCCEEEECCCCSC---------------TTSCBCSCCE
T ss_pred eeEEecCCcceEe-e--cCC--cceEEEcCCCCEEEEEecCCCeEEEEecccccc---------------eecceeeecc
Confidence 8887754432211 1 111 244555666666666554433322211111000 0001122234
Q ss_pred ecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEE
Q 001248 582 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKIL 645 (1114)
Q Consensus 582 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw 645 (1114)
+.+++..++.++.++.+++|+...+.....-....+........+.|++...++.+.|+...++
T Consensus 202 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~ 265 (355)
T d2bbkh_ 202 YSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYL 265 (355)
T ss_dssp EETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred ccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEE
Confidence 4555567888899999999999887643222111111122233444555444555555554444
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=1.7e-16 Score=173.52 Aligned_cols=210 Identities=10% Similarity=0.118 Sum_probs=137.3
Q ss_pred CccEEEEeeCCCEEEEEe--CCeEEEEEcCCCccccc--cCCCCCCeEEEEEecCCCcEEEEEe-CCCcEEEEEcccceE
Q 001248 820 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDEV 894 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~la~g~-~dg~v~iwd~~~~~~ 894 (1114)
.+..++++|||++|++++ ++.+.+|+......... ...+...+.++.|+| +++++++++ .+..|.+|+..+...
T Consensus 84 ~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-d~~~~~~~~~~~~~i~~~~~~~~~~ 162 (333)
T d1ri6a_ 84 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGH 162 (333)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred CceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeee-cceeeeccccccceeeEEEeccCCc
Confidence 355678888888877776 56788887765443322 334566788999999 777766665 455799999876432
Q ss_pred EE------eecccccCeeEEEEcCCCCEEEEEe-CCCcEEEEeCCCCccccc--cccccCCCCCCCCCCceEEEEccCCc
Q 001248 895 KS------KLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQKN--RFLQIPTGRTPTAQSDTRVQFHQDQI 965 (1114)
Q Consensus 895 ~~------~l~~h~~~V~~l~~s~d~~~l~s~s-~D~~v~iwd~~~~~~~~~--~~~~~~~~~~~~~~~i~~v~fspdg~ 965 (1114)
.. ....+......++|++++.+++... ..+...+|++........ ..................+++++|++
T Consensus 163 ~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~ 242 (333)
T d1ri6a_ 163 LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGR 242 (333)
T ss_dssp EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSS
T ss_pred ceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccC
Confidence 21 1122445568899999999887654 556778888765332111 11111111122223557789999999
Q ss_pred EEEEE--eCCeEEEEEcCCCceeeeee-cCCCCcCeeEEEECCCCCEEEEEEc-CCeEEEE--EcCCCeee
Q 001248 966 HFLVV--HETQLAIFETTKLECVKQWV-PRESSAPITHATFSCDSQLVYACFL-DATVCVF--SAANLKLR 1030 (1114)
Q Consensus 966 ~l~~~--~d~~i~iwd~~~~~~~~~~~-~~~h~~~v~~l~~s~dg~~l~s~s~-Dg~I~vw--d~~~~~~~ 1030 (1114)
++++. .++.+.+|++.......... ...+...+.+++|+|||++|++++. ++.|+|| |..+|++.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~ 313 (333)
T d1ri6a_ 243 HLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLH 313 (333)
T ss_dssp EEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEE
T ss_pred ceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcEE
Confidence 88874 56789999987654433322 1123556889999999999887764 5889999 55677654
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.74 E-value=1.6e-16 Score=175.51 Aligned_cols=324 Identities=9% Similarity=0.037 Sum_probs=192.9
Q ss_pred CeeEEEEcCCCCeEEEEe-----CCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEE--------ecCC
Q 001248 422 SVNRVIWSPDGSLFGVAY-----SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVIT--------CGDD 488 (1114)
Q Consensus 422 ~V~~l~~spdg~~las~~-----~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s--------~~~d 488 (1114)
++.-.+.+|||+++++.. .+..|.+||..+++.+. ++..+. +..++|||||+.+++++ ++.|
T Consensus 3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~---~~~~g~--~~~~a~SpDg~~l~v~~~~~~~~~~g~~d 77 (355)
T d2bbkh_ 3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIG---MIDGGF--LPNPVVADDGSFIAHASTVFSRIARGERT 77 (355)
T ss_dssp CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEE---EEEECS--SCEEEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEE---EEECCC--CCceEEcCCCCEEEEEeCCCccccccCCC
Confidence 344456789999998764 35679999999998776 444443 44799999999644332 3457
Q ss_pred CCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeE
Q 001248 489 KTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRT 568 (1114)
Q Consensus 489 ~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~ 568 (1114)
+.|++||+.+++.+..+..+......+. .....++|+++++
T Consensus 78 ~~v~v~D~~t~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~s~dg~-- 118 (355)
T d2bbkh_ 78 DYVEVFDPVTLLPTADIELPDAPRFLVG-------------------------------------TYPWMTSLTPDGK-- 118 (355)
T ss_dssp EEEEEECTTTCCEEEEEEETTCCCCCBS-------------------------------------CCGGGEEECTTSS--
T ss_pred CEEEEEECCCCCEEEEEecCCcceeecC-------------------------------------CCCceEEEecCCC--
Confidence 7899999888887766654432221110 0012233444444
Q ss_pred EeeecccceeEEEecCCCCEEEEE--eCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEE
Q 001248 569 YQGFRKRSLGVVQFDTTKNRFLAA--GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA 646 (1114)
Q Consensus 569 ~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd 646 (1114)
+++.+ +.+..+.+|+..+++.+..+..... ...+.......++.+.|+...++.
T Consensus 119 -------------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~dg~~~~v~ 174 (355)
T d2bbkh_ 119 -------------------TLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC-----YHIFPTAPDTFFMHCRDGSLAKVA 174 (355)
T ss_dssp -------------------EEEEEECSSSCEEEEEETTTTEEEEEEECCSE-----EEEEEEETTEEEEEETTSCEEEEE
T ss_pred -------------------eeEEecCCCCceeeeeecCCCcEeeEEecCCc-----ceEeecCCcceEEEcCCCCEEEEE
Confidence 44443 3567788888888888777754321 011111222333344444444443
Q ss_pred ccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCce
Q 001248 647 TSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKS 726 (1114)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 726 (1114)
...... .
T Consensus 175 ~~~~~~-~------------------------------------------------------------------------ 181 (355)
T d2bbkh_ 175 FGTEGT-P------------------------------------------------------------------------ 181 (355)
T ss_dssp CCSSSC-C------------------------------------------------------------------------
T ss_pred ecCCCe-E------------------------------------------------------------------------
Confidence 322211 0
Q ss_pred eEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCc
Q 001248 727 KVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI 806 (1114)
Q Consensus 727 ~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~ 806 (1114)
.+++..... ..+...+....+.+++..++..+.++.+++|++..... .+++..++.
T Consensus 182 ~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------~~~~~~~~~ 237 (355)
T d2bbkh_ 182 EITHTEVFH------------PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA------------KFLPAVEAL 237 (355)
T ss_dssp EEEECCCCS------------CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC------------EECCCEESS
T ss_pred EEEeccccc------------ceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcE------------EEEeccCCc
Confidence 001100000 00112223345666777788888888999998764322 112221211
Q ss_pred cccccCCCCCCCCCccEEEEeeCCCEEEEEe-C----------CeEEEEEcCCCccccccCCCCCCeEEEEEecCCCc--
Q 001248 807 MMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-G----------GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN-- 873 (1114)
Q Consensus 807 ~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d----------g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~-- 873 (1114)
........ ........+++++++..++... + +.|.+||..+++.+..+. +...+.+++|+| ||+
T Consensus 238 ~~~~~~~~-~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~sp-DG~~~ 314 (355)
T d2bbkh_ 238 TEAERADG-WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQ-DEKPL 314 (355)
T ss_dssp CHHHHHTT-EEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECC-SSSCE
T ss_pred ccceEeee-eeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec-CCCCEEEEEEcC-CCCeE
Confidence 11000000 0123345689999999887664 2 369999999999887776 345688999999 776
Q ss_pred EEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCC
Q 001248 874 IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA 913 (1114)
Q Consensus 874 ~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d 913 (1114)
+++++..|++|++||+.+++.+.++.++...-..+.+.++
T Consensus 315 l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~ 354 (355)
T d2bbkh_ 315 LYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADM 354 (355)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCC
T ss_pred EEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCCC
Confidence 5567788999999999999999999877665566666544
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=2.9e-16 Score=171.65 Aligned_cols=285 Identities=11% Similarity=0.129 Sum_probs=186.9
Q ss_pred eeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe--CCeEEE
Q 001248 766 ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISL 843 (1114)
Q Consensus 766 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--dg~i~i 843 (1114)
+++++.++.|++|++... +.+.. +....+...+..++|+|||++|+++. |+.|++
T Consensus 7 ~v~~~~~~~I~v~~~~~~---------------------~~l~~--~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~ 63 (333)
T d1ri6a_ 7 YIASPESQQIHVWNLNHE---------------------GALTL--TQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLA 63 (333)
T ss_dssp EEEEGGGTEEEEEEECTT---------------------SCEEE--EEEEECSSCCCCEEECTTSSEEEEEETTTTEEEE
T ss_pred EEECCCCCcEEEEEEcCC---------------------CCeEE--EEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEE
Confidence 467778899999998631 11100 00012678899999999999996665 799999
Q ss_pred EEcCCCcccccc---CCCCCCeEEEEEecCCCcEEEEEeC-CCcEEEEEcccceEEE--eecccccCeeEEEEcCCCCEE
Q 001248 844 FNMMTFKTMATF---MPPPPAATFLAFHPQDNNIIAIGMD-DSSIQIYNVRVDEVKS--KLKGHSKRITGLAFSHALNVL 917 (1114)
Q Consensus 844 wd~~~~~~~~~~---~~~~~~i~~l~~sp~d~~~la~g~~-dg~v~iwd~~~~~~~~--~l~~h~~~V~~l~~s~d~~~l 917 (1114)
|++.......++ ..+...+..++|+| ||++|++++. ++.|.+|+........ ....+...+.++.|+||++++
T Consensus 64 ~~i~~~~~~~~~~~~~~~~~~p~~l~~sp-Dg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~ 142 (333)
T d1ri6a_ 64 YRIAPDDGALTFAAESALPGSLTHISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTL 142 (333)
T ss_dssp EEECTTTCCEEEEEEEECSSCCSEEEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEE
T ss_pred EEEeCCCCcEEEeeecccCCCceEEEEcC-CCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceee
Confidence 999865543332 22345577899999 8888888774 6789999988765433 344567778899999999998
Q ss_pred EEEeC-CCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE--eCCeEEEEEcCCCcee----eeee
Q 001248 918 VSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLECV----KQWV 990 (1114)
Q Consensus 918 ~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~--~d~~i~iwd~~~~~~~----~~~~ 990 (1114)
++++. +..|.+|+................. ........++|++++.+++.. ..+...+|+....... ....
T Consensus 143 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 220 (333)
T d1ri6a_ 143 WVPALKQDRICLFTVSDDGHLVAQDPAEVTT--VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLD 220 (333)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEEEEC--STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEE
T ss_pred eccccccceeeEEEeccCCcceeeeceeeee--ecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeee
Confidence 88775 4568999987644322111111110 111245789999999998874 4567778876543221 1111
Q ss_pred c----CCCCcCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEE
Q 001248 991 P----RESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1065 (1114)
Q Consensus 991 ~----~~h~~~v~~l~~s~dg~~l~s~s-~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s 1065 (1114)
. .........+++++|+++++.+. .++.+.+|++........+. ...+.+ ..|..++|+| ||++|++
T Consensus 221 ~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~~p~~~a~sp-DGk~l~v 292 (333)
T d1ri6a_ 221 MMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKE--GFQPTE-----TQPRGFNVDH-SGKYLIA 292 (333)
T ss_dssp CSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEE--EEEECS-----SSCCCEEECT-TSSEEEE
T ss_pred eeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEE--EEeCCC-----CCeeEEEEeC-CCCEEEE
Confidence 0 12245677889999999876554 56789999987654433322 011111 2344799999 6888776
Q ss_pred Ee-CCCcEEEEeccCCCCcc
Q 001248 1066 GL-SDGGVHVFEPLESEGKW 1084 (1114)
Q Consensus 1066 ~~-~Dg~v~vW~i~~~~~~~ 1084 (1114)
++ .+++|.+|++....+++
T Consensus 293 a~~~~~~v~v~~id~~tG~l 312 (333)
T d1ri6a_ 293 AGQKSHHISVYEIVGEQGLL 312 (333)
T ss_dssp ECTTTCEEEEEEEETTTTEE
T ss_pred EECCCCeEEEEEEECCCCcE
Confidence 65 56899999876544434
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.59 E-value=1.2e-13 Score=158.49 Aligned_cols=151 Identities=15% Similarity=0.133 Sum_probs=110.0
Q ss_pred EEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeC--
Q 001248 363 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS-- 440 (1114)
Q Consensus 363 ~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~-- 440 (1114)
.+.|++|+++ +. ..++.|.+||+.+++.... +....+..|...|.++.|||||++|+.++.
T Consensus 21 ~~~W~~d~~~-~~--~~~~~~~~~~~~t~~~~~~--------------~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~ 83 (470)
T d2bgra1 21 SLRWISDHEY-LY--KQENNILVFNAEYGNSSVF--------------LENSTFDEFGHSINDYSISPDGQFILLEYNYV 83 (470)
T ss_dssp CCEECSSSEE-EE--ESSSCEEEEETTTCCEEEE--------------ECTTTTTTSSSCCCEEEECTTSSEEEEEEEEE
T ss_pred CCEeCCCCEE-EE--EcCCcEEEEECCCCCEEEE--------------EchhhhhhccCccceeEECCCCCEEEEEECCc
Confidence 4779999985 55 3588999999999987542 122246778889999999999999998854
Q ss_pred -------CCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccc----
Q 001248 441 -------RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE---- 509 (1114)
Q Consensus 441 -------dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~---- 509 (1114)
++.+.|||+.+++.. .+..|...+..+.|||||+. +|.. .++.+.+|+..+++..+....+.
T Consensus 84 ~~~r~s~~~~~~l~d~~~~~~~----~l~~~~~~~~~~~~SPDG~~--ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~ 156 (470)
T d2bgra1 84 KQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGHK--LAYV-WNNDIYVKIEPNLPSYRITWTGKEDII 156 (470)
T ss_dssp ECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTTC--EEEE-ETTEEEEESSTTSCCEECCSCCBTTTE
T ss_pred ceeeeccCceEEEEECCCCccc----ccccCCccccccccccCcce--eeEe-ecccceEEECCCCceeeeeeccCCCcc
Confidence 467899999998643 47789999999999999994 5553 46789999999887665433221
Q ss_pred --------------cCEEEEeeccCCCceEEEEEecCCe-EEEEE
Q 001248 510 --------------APVYSVCPHHKENIQFIFSTALDGK-IKAWL 539 (1114)
Q Consensus 510 --------------~~v~~~~~~~~~~~~~l~s~~~d~~-i~~wd 539 (1114)
+....+.| +|||+.|+....|.+ +..|.
T Consensus 157 ~~g~~d~~~~~~~~~~~~~~~w--SPDGk~ia~~~~d~~~v~~~~ 199 (470)
T d2bgra1 157 YNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIE 199 (470)
T ss_dssp EESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEE
T ss_pred cccccceeeeeeecCCccccEE--CCCCCccceeEecCCcCceEE
Confidence 12233445 456678888766533 44443
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.51 E-value=2.1e-14 Score=156.06 Aligned_cols=350 Identities=13% Similarity=0.090 Sum_probs=208.5
Q ss_pred CCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEE
Q 001248 369 VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYS 448 (1114)
Q Consensus 369 dg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd 448 (1114)
|.-|.+++|+.+|+|.||++.+++.+.+. + .|+|++.. +.|..+.+.+++.
T Consensus 9 De~y~f~Sgg~sG~V~V~dlpS~r~l~~I------------------------p----Vfspd~~~-g~g~~~es~~vl~ 59 (441)
T d1qnia2 9 DEYYGFWSGGHQGEVRVLGVPSMRELMRI------------------------P----VFNVDSAT-GWGITNESKEILG 59 (441)
T ss_dssp CSEEEEEECBTTCCEEEEEETTTEEEEEE------------------------C----SSSBCTTT-CTTTSHHHHHHHC
T ss_pred CCEEEEEeCCCCCcEEEEeCCCCcEEEEE------------------------E----eEcCCCCE-EEEECCccceEEe
Confidence 44566888999999999999999887631 1 16777654 2232222222211
Q ss_pred ccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEee-ccccCEEEEeeccCCCceEEE
Q 001248 449 YHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIF 527 (1114)
Q Consensus 449 ~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~ 527 (1114)
++.... ....|........++|||++ ++++...+.+|.++|++++++...+. .+...+..++|+++++-.+++
T Consensus 60 --~~~~~~---~gd~hhP~~s~t~gtpDGr~-lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~ 133 (441)
T d1qnia2 60 --GDQQYL---NGDCHHPHISMTDGRYDGKY-LFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVF 133 (441)
T ss_dssp --SSSCCS---CCCBCCCEEEEETTEEEEEE-EEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEE
T ss_pred --cccccc---cCcccCCCcceecccCCCCE-EEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEE
Confidence 111111 12345556677778999996 56777788999999999999887765 356788888987666443555
Q ss_pred EEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcc
Q 001248 528 STALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 607 (1114)
Q Consensus 528 s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 607 (1114)
..+.+..-... ++... ..+ .. ...+..+|..+.+
T Consensus 134 ~~~~~~v~~~~-------------------------dg~~~--------------~~~-~~------~~~~~~iD~~t~~ 167 (441)
T d1qnia2 134 CNAEFVIPQPN-------------------------DGTDF--------------SLD-NS------YTMFTAIDAETMD 167 (441)
T ss_dssp EEECSCEESSC-------------------------SSSCC--------------CGG-GE------EEEEEEEETTTCS
T ss_pred eccCCcccccC-------------------------ccccc--------------ccc-cc------cceEEeecCccce
Confidence 54443221111 11100 000 00 1235577888888
Q ss_pred eEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCc-EEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhc
Q 001248 608 LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG-IKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAA 686 (1114)
Q Consensus 608 ~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1114)
....+...+. ...+.++|||+++++.+.+.. +..++..+. ...
T Consensus 168 v~~qI~v~~~---p~~v~~spdGk~a~vt~~nse~~~~id~~t~-~~~-------------------------------- 211 (441)
T d1qnia2 168 VAWQVIVDGN---LDNTDADYTGKYATSTCYNSERAVDLAGTMR-NDR-------------------------------- 211 (441)
T ss_dssp EEEEEEESSC---CCCEEECSSSSEEEEEESCTTCCSSHHHHTC-SSB--------------------------------
T ss_pred eeEEEecCCC---ccceEECCCCCEEEEEecCCCceEEEeccCc-ceE--------------------------------
Confidence 8777765543 678999999999988876532 211121111 000
Q ss_pred cccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCccee
Q 001248 687 TSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAI 766 (1114)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l 766 (1114)
..+.+.+.. ..+.++++|+++
T Consensus 212 -------------------------------------d~i~v~n~p----------------------~~~~~~~dGk~~ 232 (441)
T d1qnia2 212 -------------------------------------DWVVVFNVE----------------------RIAAAVKAGNFK 232 (441)
T ss_dssp -------------------------------------CEEEEEEHH----------------------HHHHHHHTTCCB
T ss_pred -------------------------------------EEEEeCCcc----------------------ceEEEecCCCEE
Confidence 111111111 112345666644
Q ss_pred eecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe--CCeEEEE
Q 001248 767 LALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLF 844 (1114)
Q Consensus 767 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--dg~i~iw 844 (1114)
.. +.++.+.++... ....+.. +. -......+.++|||+++++++ +++|.+|
T Consensus 233 ~v-~~~~v~vvd~~~----------------------~~~v~~~-IP---vgksPhGv~vSPDGkyl~~~~~~~~tvsv~ 285 (441)
T d1qnia2 233 TI-GDSKVPVVDGRG----------------------ESEFTRY-IP---VPKNPHGLNTSPDGKYFIANGKLSPTVSVI 285 (441)
T ss_dssp CC-TTCCCCEEECSS----------------------SCSSEEE-EC---CBSSCCCEEECTTSCEEEEECTTSSBEEEE
T ss_pred Ee-CCCCcEEEEccc----------------------CCceEEE-Ee---CCCCccCceECCCCCEEEEeCCcCCcEEEE
Confidence 43 334444444321 1111111 11 123356799999999988765 8999999
Q ss_pred EcCCCccc--------cccCCC---CCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc----------ceEEEee-----
Q 001248 845 NMMTFKTM--------ATFMPP---PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV----------DEVKSKL----- 898 (1114)
Q Consensus 845 d~~~~~~~--------~~~~~~---~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~----------~~~~~~l----- 898 (1114)
|+.+.... ..+.++ .-.....+|++ +|+.+.+.+.|.+|..|++.. ...+..+
T Consensus 286 d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~-~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~ 364 (441)
T d1qnia2 286 AIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDG-RGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQ 364 (441)
T ss_dssp EGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECS-SSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSC
T ss_pred EeehhhhHhhccCCcceEEEeecccccCcccceecC-CceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccC
Confidence 98753321 111111 11245578999 899999999999999999852 1233344
Q ss_pred cccccCeeEEEEcCCCCEEEEEeC
Q 001248 899 KGHSKRITGLAFSHALNVLVSSGA 922 (1114)
Q Consensus 899 ~~h~~~V~~l~~s~d~~~l~s~s~ 922 (1114)
.||...+.+.+++|||+||++++.
T Consensus 365 ~GH~~~~~~~t~~pdGk~l~s~~k 388 (441)
T d1qnia2 365 PGHNHASLTESRDADGKWLVVLSK 388 (441)
T ss_dssp EEEEEETTTTSTTCCCCEEEEEES
T ss_pred CCCCccccccccCCCCcEEEecCc
Confidence 588888889999999999999943
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.51 E-value=1.7e-13 Score=151.51 Aligned_cols=241 Identities=10% Similarity=0.005 Sum_probs=157.8
Q ss_pred cEEEEeeCCCEEEEEe-----------CCeEEEEEcCCCccccccCCCCC-------CeEEEEEecCCCcEEEEEe-CCC
Q 001248 822 PCFALSKNDSYVMSAS-----------GGKISLFNMMTFKTMATFMPPPP-------AATFLAFHPQDNNIIAIGM-DDS 882 (1114)
Q Consensus 822 ~~v~~s~d~~~l~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~-------~i~~l~~sp~d~~~la~g~-~dg 882 (1114)
..++++|||++|++.+ |+.|++||..+++.+..+..+.. ....++|+| ||++|+++. .++
T Consensus 68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~Sp-DGk~l~va~~~~~ 146 (368)
T d1mdah_ 68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA-SSACLLFFLFGSS 146 (368)
T ss_dssp CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT-TSSCEEEEECSSS
T ss_pred CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECC-CCCEEEEEeCCCC
Confidence 4689999999988754 46799999999988776643321 234689999 888887765 679
Q ss_pred cEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEcc
Q 001248 883 SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 962 (1114)
Q Consensus 883 ~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fsp 962 (1114)
.+.+||+.+++.+..+..+..... +......++..+.||++.+|++............ .........+..+.+.+
T Consensus 147 ~v~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 221 (368)
T d1mdah_ 147 AAAGLSVPGASDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA--QCTGAQNCSSQAAQANY 221 (368)
T ss_dssp CEEEEEETTTEEEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEECCC--CSCTTSCBCSCCEEETT
T ss_pred eEEEEECCCCcEeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCCceeeeeeec--ccccccccceeeccccc
Confidence 999999999998888766544321 1122345666777888877777654432211111 11111112445677778
Q ss_pred CCcEEEEEeCCeEEEEEcCCCceeeeeecCCC----------CcCeeEEEECCCCCEEEEEEcC---------CeEEEEE
Q 001248 963 DQIHFLVVHETQLAIFETTKLECVKQWVPRES----------SAPITHATFSCDSQLVYACFLD---------ATVCVFS 1023 (1114)
Q Consensus 963 dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h----------~~~v~~l~~s~dg~~l~s~s~D---------g~I~vwd 1023 (1114)
++..+.. ..+.+.+++...+..........+ ......+++++++..++....+ ..|.+||
T Consensus 222 ~g~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D 300 (368)
T d1mdah_ 222 PGMLVWA-VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVT 300 (368)
T ss_dssp TTEEEEC-BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEE
T ss_pred CcEEEEe-cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEE
Confidence 8765543 345566666655443322211111 1223458899999987765433 3599999
Q ss_pred cCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCC-e-EEEEeCCCcEEEEeccCCC
Q 001248 1024 AANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-E-FALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1024 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~-~-l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
..+++.+.++. . + -.+..++|+| |++ + ++++..|++|++||..+++
T Consensus 301 ~~t~~~~~~~~----~--~-----~~~~~~a~sp-DG~~~ly~s~~~~~~v~v~D~~tgk 348 (368)
T d1mdah_ 301 ASVGQTSGPIS----N--G-----HDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp SSSCCEEECCE----E--E-----EEECEEEECC-SSSCEEEEEETTTTEEEEEESSSCE
T ss_pred CCCCcEeEEec----C--C-----CceeEEEECC-CCCEEEEEEeCCCCeEEEEECCCCC
Confidence 99999887665 1 1 1233799999 565 3 4677789999999999999
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.50 E-value=4.8e-13 Score=147.79 Aligned_cols=270 Identities=10% Similarity=-0.014 Sum_probs=173.0
Q ss_pred CCCCceEEEEcCCCCeEEEE--EecCCc--EEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCC
Q 001248 357 QGSSPMSMDFHPVQQTLLLV--GTNVGD--IGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~t--g~~dg~--v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1114)
+.+....++.++|++...++ ...+|. |.+||..+++.+.. ..++.. ..++|||||
T Consensus 18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~-------------------~~~~~~--~~~a~spDg 76 (368)
T d1mdah_ 18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGH-------------------SLGAFL--SLAVAGHSG 76 (368)
T ss_dssp CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEE-------------------EEECTT--CEEEECTTS
T ss_pred cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEE-------------------EeCCCC--CcceECCCC
Confidence 55666777788999864333 344444 77779999987763 233333 358999999
Q ss_pred CeEEEEe----------CCCeEEEEEccCCceeeeeEeecc-----ccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCC
Q 001248 433 SLFGVAY----------SRHIVQIYSYHGGDEVRQHLEIDA-----HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT 497 (1114)
Q Consensus 433 ~~las~~----------~dg~i~iwd~~~~~~~~~~~~l~~-----h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~ 497 (1114)
++|++++ .|+.|.+||..+++.+... .+.. .......++|+|||++ ++++...++.+.+||+.
T Consensus 77 ~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i-~~p~~~~~~~g~~p~~~a~SpDGk~-l~va~~~~~~v~~~d~~ 154 (368)
T d1mdah_ 77 SDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADI-ELPDAPRFSVGPRVHIIGNCASSAC-LLFFLFGSSAAAGLSVP 154 (368)
T ss_dssp SCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEE-EETTSCSCCBSCCTTSEEECTTSSC-EEEEECSSSCEEEEEET
T ss_pred CEEEEEcccCccccccccCCeEEEEECCCCcEeeee-cCCccceecccCCccceEECCCCCE-EEEEeCCCCeEEEEECC
Confidence 9999865 3678999999998876532 1111 1122356999999996 33444567999999999
Q ss_pred CCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeec------CCCCeeEEEEEecCCCeEEee
Q 001248 498 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE------APGRWCTTMAYSADGTRTYQG 571 (1114)
Q Consensus 498 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~------~~~~~v~~~~~s~~g~~~~~~ 571 (1114)
+++.+..+..+...... +... ..++..+.||.+.+|++.......... .+...+....+.+++..++..
T Consensus 155 ~~~~~~~~~~~~~~~~~----~~~~-~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 229 (368)
T d1mdah_ 155 GASDDQLTKSASCFHIH----PGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV 229 (368)
T ss_dssp TTEEEEEEECSSCCCCE----EEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB
T ss_pred CCcEeEEeeccCcceEc----cCCC-ceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec
Confidence 99998888765443211 2222 356677788888888876554433211 111112222333332211110
Q ss_pred -------------------------------ecccceeEEEecCCCCEEEEEeCC---------CeEEEEECCCcceEEE
Q 001248 572 -------------------------------FRKRSLGVVQFDTTKNRFLAAGDD---------FSIKFWDMDSVQLLTS 611 (1114)
Q Consensus 572 -------------------------------~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~ 611 (1114)
........+.+++++..++....+ ..|.+||..+++.+..
T Consensus 230 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~ 309 (368)
T d1mdah_ 230 ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP 309 (368)
T ss_dssp SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEEC
T ss_pred CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEE
Confidence 000112336778888776664322 3599999999998887
Q ss_pred eccCCCCCCcCeEEEcCCCC-E-EEEEeCCCcEEEEEccCCccceeecc
Q 001248 612 IDADGGLPASPRIRFNKDGC-L-LAVSTNDNGIKILATSDGIRLLRTFE 658 (1114)
Q Consensus 612 ~~~~~~~~~v~~~~~s~d~~-~-l~~~~~dg~i~iwd~~~~~~~~~~~~ 658 (1114)
+.... .+.+++|+|||+ + ++++..++.|++||..++ +.+..+.
T Consensus 310 ~~~~~---~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tg-k~~~~i~ 354 (368)
T d1mdah_ 310 ISNGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSVE 354 (368)
T ss_dssp CEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSC-EEEEECC
T ss_pred ecCCC---ceeEEEECCCCCEEEEEEeCCCCeEEEEECCCC-CEEEEEE
Confidence 76432 478899999997 3 456677899999999999 5555554
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.49 E-value=5.7e-12 Score=144.24 Aligned_cols=150 Identities=11% Similarity=0.095 Sum_probs=104.5
Q ss_pred eEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEee-----ccccCEEEEeeccCCCceEEEEEec---------CCe
Q 001248 469 NDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-----GHEAPVYSVCPHHKENIQFIFSTAL---------DGK 534 (1114)
Q Consensus 469 ~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~~l~s~~~---------d~~ 534 (1114)
..+.|.+|++ ++.. .|+.+.+||+.+++....+. .|...|.++.|+ +||++|+.++. ++.
T Consensus 20 ~~~~W~~d~~--~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~S--pDg~~i~~~~~~~~~~r~s~~~~ 93 (470)
T d2bgra1 20 YSLRWISDHE--YLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSIS--PDGQFILLEYNYVKQWRHSYTAS 93 (470)
T ss_dssp CCCEECSSSE--EEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEEC--TTSSEEEEEEEEEECSSSCEEEE
T ss_pred cCCEeCCCCE--EEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEEC--CCCCEEEEEECCcceeeeccCce
Confidence 4588999998 4543 47889999999998766554 445778888875 56688887753 567
Q ss_pred EEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEecc
Q 001248 535 IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA 614 (1114)
Q Consensus 535 i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 614 (1114)
+.+||+.+++ ...+..+...+....|||||+ .++. ..++.+++|+..+++.......
T Consensus 94 ~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~---------------------~ia~-~~~~~l~~~~~~~g~~~~~t~~ 150 (470)
T d2bgra1 94 YDIYDLNKRQ-LITEERIPNNTQWVTWSPVGH---------------------KLAY-VWNNDIYVKIEPNLPSYRITWT 150 (470)
T ss_dssp EEEEETTTTE-ECCSSCCCTTEEEEEECSSTT---------------------CEEE-EETTEEEEESSTTSCCEECCSC
T ss_pred EEEEECCCCc-ccccccCCccccccccccCcc---------------------eeeE-eecccceEEECCCCceeeeeec
Confidence 8899998754 444555666677777777776 4555 4567899999988876654432
Q ss_pred CC----------------CCCCcCeEEEcCCCCEEEEEeCCCc-EEEEEc
Q 001248 615 DG----------------GLPASPRIRFNKDGCLLAVSTNDNG-IKILAT 647 (1114)
Q Consensus 615 ~~----------------~~~~v~~~~~s~d~~~l~~~~~dg~-i~iwd~ 647 (1114)
.. .......+.|||||+.|+....|.+ +..|.+
T Consensus 151 ~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~ 200 (470)
T d2bgra1 151 GKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEY 200 (470)
T ss_dssp CBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred cCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEE
Confidence 11 1123456889999999999876544 555543
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.33 E-value=1.8e-11 Score=132.67 Aligned_cols=251 Identities=14% Similarity=0.124 Sum_probs=164.2
Q ss_pred CCCCccEEEEeeCCCEEEEEe--CCeEEEEEcCCCccccccC-CCCCCeEEEEEecCCCc--EEEEEeCCC---------
Q 001248 817 PEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFM-PPPPAATFLAFHPQDNN--IIAIGMDDS--------- 882 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~sp~d~~--~la~g~~dg--------- 882 (1114)
|.-.......+|||++|.+.. +++|.++|+.+++....+. .....+..++|+| +++ +++..+++.
T Consensus 70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~sp-dg~t~YV~~~~~~~v~~~~dg~~ 148 (441)
T d1qnia2 70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQK-VPKTNYVFCNAEFVIPQPNDGTD 148 (441)
T ss_dssp CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECC-SSBCCEEEEEECSCEESSCSSSC
T ss_pred cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEec-cCCEEEEEeccCCcccccCcccc
Confidence 334445555689999998876 6899999999998877654 3466799999999 776 444444332
Q ss_pred --------cEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCC------------------------------
Q 001248 883 --------SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS------------------------------ 924 (1114)
Q Consensus 883 --------~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~------------------------------ 924 (1114)
.+..+|..+.+....+... +....++|+|||+++++++.+.
T Consensus 149 ~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~ 227 (441)
T d1qnia2 149 FSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVK 227 (441)
T ss_dssp CCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHH
T ss_pred cccccccceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEec
Confidence 2355787777776666543 3578899999999998887542
Q ss_pred -----------cEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE--eCCeEEEEEcCCCcee-----
Q 001248 925 -----------QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLECV----- 986 (1114)
Q Consensus 925 -----------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~--~d~~i~iwd~~~~~~~----- 986 (1114)
.+.|++....+. ...++.+ .....+.++|||++++++ .++++.+||+.+.+..
T Consensus 228 dGk~~~v~~~~v~vvd~~~~~~v----~~~IPvg-----ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~ 298 (441)
T d1qnia2 228 AGNFKTIGDSKVPVVDGRGESEF----TRYIPVP-----KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKI 298 (441)
T ss_dssp TTCCBCCTTCCCCEEECSSSCSS----EEEECCB-----SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSS
T ss_pred CCCEEEeCCCCcEEEEcccCCce----EEEEeCC-----CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccC
Confidence 223332222111 1112222 234789999999999884 6889999998764321
Q ss_pred ---eeeecC-CCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCC----------CeeeEEeCCCcccCCCCCCCCccceE
Q 001248 987 ---KQWVPR-ESSAPITHATFSCDSQLVYACFLDATVCVFSAAN----------LKLRCRINPSAYLPAGVSSSNVHPLV 1052 (1114)
Q Consensus 987 ---~~~~~~-~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~ 1052 (1114)
..+... ...-.....+|+++|..+.+.+.|..|..|++.. ...+.++..+ |.+ ||... +++
T Consensus 299 ~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~-y~~-GH~~~---~~~ 373 (441)
T d1qnia2 299 ELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQ-YQP-GHNHA---SLT 373 (441)
T ss_dssp CGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECS-SCE-EEEEE---TTT
T ss_pred CcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccc-cCC-CCCcc---ccc
Confidence 111100 0122345678999998888888999999999742 1234444433 333 33222 346
Q ss_pred EEecCCCCCeEEEE---eCCC----------cEEEEeccCCCCcc
Q 001248 1053 IAAHPQEPNEFALG---LSDG----------GVHVFEPLESEGKW 1084 (1114)
Q Consensus 1053 ~~~~~~d~~~l~s~---~~Dg----------~v~vW~i~~~~~~~ 1084 (1114)
.+|+| ||++|+++ +.|. +-.+.||+..+.++
T Consensus 374 ~t~~p-dGk~l~s~~k~s~dr~~~~g~~~~~~~q~~~i~~~~~~~ 417 (441)
T d1qnia2 374 ESRDA-DGKWLVVLSKFSKDRFLPVGPLHPENDQLIDISGEEMKL 417 (441)
T ss_dssp TSTTC-CCCEEEEEESCCGGGSCCCSSSCCEEEEEEECSSSSCEE
T ss_pred cccCC-CCcEEEecCccccccCcCCCCCCCccceeEEecCCeEEE
Confidence 78999 79999999 5553 56778888666443
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.21 E-value=7.6e-10 Score=120.55 Aligned_cols=255 Identities=9% Similarity=0.065 Sum_probs=150.8
Q ss_pred CCCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCcccccc--CCCCCCeEEEEEecCCCcE--EEEEe-CCCcEEEEEccc
Q 001248 817 PEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATF--MPPPPAATFLAFHPQDNNI--IAIGM-DDSSIQIYNVRV 891 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~--~~~~~~i~~l~~sp~d~~~--la~g~-~dg~v~iwd~~~ 891 (1114)
....+..+++++++++|.+...+.+..|.+.....+... .........+++++ +++. ++++. ..+.|..+.+..
T Consensus 38 ~~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~-~~~~~~v~~a~~~~~~v~~~~~~~ 116 (365)
T d1jofa_ 38 QDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECC-CCCEEEEEEecCCCCEEEEeEccC
Confidence 345567799999999999888788888877632222111 11223456677888 6663 33322 345665554422
Q ss_pred -ce------------E---EE-eecccccCeeEEEEcCCCCEEEEEeC-CCcEEEEeCCCCcccc-ccccccCCCCCCCC
Q 001248 892 -DE------------V---KS-KLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGWEKQK-NRFLQIPTGRTPTA 952 (1114)
Q Consensus 892 -~~------------~---~~-~l~~h~~~V~~l~~s~d~~~l~s~s~-D~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~ 952 (1114)
+. . .. .-......+.+++|+|||++|++++. ...|.+|++....... ......... .
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~----g 192 (365)
T d1jofa_ 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDP----G 192 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSST----T
T ss_pred CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCC----C
Confidence 10 0 00 01112234679999999999888764 3468888765432211 111111111 1
Q ss_pred CCceEEEEccCCcEEEEE--eCCeEEEEEcCCCceeeee-----ec------------CCCCcCeeEEEECCCCCEEEEE
Q 001248 953 QSDTRVQFHQDQIHFLVV--HETQLAIFETTKLECVKQW-----VP------------RESSAPITHATFSCDSQLVYAC 1013 (1114)
Q Consensus 953 ~~i~~v~fspdg~~l~~~--~d~~i~iwd~~~~~~~~~~-----~~------------~~h~~~v~~l~~s~dg~~l~s~ 1013 (1114)
.....++|+|||+++.+. .+++|.+|+.......... .. ..+......+.++|||++|+++
T Consensus 193 ~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvs 272 (365)
T d1jofa_ 193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS 272 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEE
Confidence 356899999999999874 5788999998765432211 10 0112345678999999999887
Q ss_pred Ec------CCeEEEEEcCCCeeeEE-eCCCcccCCCCCCCCccceEEEecCCCCCeEEEE-eCCCcEEEEeccCCC
Q 001248 1014 FL------DATVCVFSAANLKLRCR-INPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG-LSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1014 s~------Dg~I~vwd~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~-~~Dg~v~vW~i~~~~ 1081 (1114)
.. .+.|..|++.....+.+ .........| ..+..++++|.+|++|+++ ..++.|.+|++....
T Consensus 273 nr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G-----~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 273 SRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSG-----GHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp EEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCC-----TTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred cccCCCccceEEEEEEecCCCceeeEeEeeEEEcCC-----CCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence 53 22477788754322221 1111111122 3344788998678877665 567999999987654
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.11 E-value=1.9e-08 Score=106.15 Aligned_cols=246 Identities=13% Similarity=0.083 Sum_probs=160.0
Q ss_pred CCcceeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEE
Q 001248 347 LPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV 426 (1114)
Q Consensus 347 ~~~~~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l 426 (1114)
.|.+++..+.-...+..++++|||+ |+++...+++|..|+....... +......+.++
T Consensus 16 ~~~~v~~~~p~~~~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g~~~~---------------------~~~~~~~~~gl 73 (302)
T d2p4oa1 16 APAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQQI---------------------HATVEGKVSGL 73 (302)
T ss_dssp CCEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCCEEE---------------------EEECSSEEEEE
T ss_pred CcccEEEECCCCCCcCCEEECCCCC-EEEEeCCCCEEEEEeCCCCEEE---------------------EEcCCCCcceE
Confidence 3455666676666789999999999 7899888999999986643222 22344579999
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEee
Q 001248 427 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 506 (1114)
Q Consensus 427 ~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 506 (1114)
+|++||+++++...++.+.+|+....................+.+++.+++. ++++.+.++.+..+|...+.......
T Consensus 74 a~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~--~~v~~~~~~~i~~~~~~~~~~~~~~~ 151 (302)
T d2p4oa1 74 AFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIWLE 151 (302)
T ss_dssp EECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred EEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCC--EEeeccccccceeeeccCCcceeEec
Confidence 9999999999988888888888765432222112223455688999999998 78888888889888877664322211
Q ss_pred ----------ccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccc
Q 001248 507 ----------GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 576 (1114)
Q Consensus 507 ----------~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~ 576 (1114)
........+.+ +. +.++++.+..+.|..++........... +.. ....
T Consensus 152 ~~~~~~~~~~~~~~~~ngi~~--~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~--------------~~~~ 209 (302)
T d2p4oa1 152 HPMLARSNSESVFPAANGLKR--FG-NFLYVSNTEKMLLLRIPVDSTDKPGEPE-----IFV--------------EQTN 209 (302)
T ss_dssp CGGGSCSSTTCCSCSEEEEEE--ET-TEEEEEETTTTEEEEEEBCTTSCBCCCE-----EEE--------------ESCC
T ss_pred CCccceeeccCcccccccccc--cC-CceeeecCCCCeEEeccccccccccccc-----ccc--------------CCCC
Confidence 11123344443 22 2466667778888888776543221100 000 0011
Q ss_pred eeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEE---cCCCCEEEEEeCC
Q 001248 577 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRF---NKDGCLLAVSTND 639 (1114)
Q Consensus 577 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~---s~d~~~l~~~~~d 639 (1114)
...++++++|+++++...++.|..++.. ++..............++++| ++|++.|++++..
T Consensus 210 pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 210 IDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp CSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred CcceEECCCCCEEEEEcCCCcEEEECCC-CCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence 2236677777777777788999999875 444333333333345678999 6788888776654
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.04 E-value=5.4e-08 Score=105.51 Aligned_cols=168 Identities=8% Similarity=0.006 Sum_probs=104.7
Q ss_pred CCeEEEEEecCCCcEEEEEeC-CCcEEEEEccc-ceEE--Eee--cccccCeeEEEEcCCCCEEEEEe-CCCcEEEEeCC
Q 001248 860 PAATFLAFHPQDNNIIAIGMD-DSSIQIYNVRV-DEVK--SKL--KGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSD 932 (1114)
Q Consensus 860 ~~i~~l~~sp~d~~~la~g~~-dg~v~iwd~~~-~~~~--~~l--~~h~~~V~~l~~s~d~~~l~s~s-~D~~v~iwd~~ 932 (1114)
..+.+++|+| ||+++++++. ...|.+|+... +... ... .........++|+||++++.+.. .+++|.+|+++
T Consensus 145 ~h~h~v~~sP-dG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~ 223 (365)
T d1jofa_ 145 TGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp CCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CcceEEEECC-CCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEec
Confidence 3478899999 7877766653 45788887654 2221 121 12345678899999999885554 67899999997
Q ss_pred CCccccccccc---cCC-C-------CCCCCCCceEEEEccCCcEEEEE--eCC-----eEEEEEcCCCceeee----ee
Q 001248 933 GWEKQKNRFLQ---IPT-G-------RTPTAQSDTRVQFHQDQIHFLVV--HET-----QLAIFETTKLECVKQ----WV 990 (1114)
Q Consensus 933 ~~~~~~~~~~~---~~~-~-------~~~~~~~i~~v~fspdg~~l~~~--~d~-----~i~iwd~~~~~~~~~----~~ 990 (1114)
........... ... + ..........+.++|||++|+++ .+. .|..|++.....+.. ..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~ 303 (365)
T d1jofa_ 224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP 303 (365)
T ss_dssp TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE
T ss_pred CCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeE
Confidence 75432211111 000 0 00001124578999999999884 232 377787765432221 11
Q ss_pred cCCCCcCeeEEEECC-CCCEEEEEE-cCCeEEEEEcCCCe
Q 001248 991 PRESSAPITHATFSC-DSQLVYACF-LDATVCVFSAANLK 1028 (1114)
Q Consensus 991 ~~~h~~~v~~l~~s~-dg~~l~s~s-~Dg~I~vwd~~~~~ 1028 (1114)
.........+++++| +|++|++++ .++.|.||+++...
T Consensus 304 ~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 304 TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred EEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence 122345678899998 899887775 56899999876554
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.99 E-value=2.7e-08 Score=105.05 Aligned_cols=237 Identities=9% Similarity=0.019 Sum_probs=152.2
Q ss_pred CCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceE-EE
Q 001248 819 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV-KS 896 (1114)
Q Consensus 819 ~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~-~~ 896 (1114)
..+..++++|||+++++.. +++|..|+... + ...+......+.+++|++ +|+++++...++.+..|+...... ..
T Consensus 28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~ 104 (302)
T d2p4oa1 28 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVE 104 (302)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CCcCCEEECCCCCEEEEeCCCCEEEEEeCCC-C-EEEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEeccccccee
Confidence 3578899999999988887 89998888653 3 233444567899999999 899999998899999888764321 11
Q ss_pred ee--cccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccc--cCCCCCCCCCCceEEEEccCCcEEEE--E
Q 001248 897 KL--KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQ--IPTGRTPTAQSDTRVQFHQDQIHFLV--V 970 (1114)
Q Consensus 897 ~l--~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~--~~~~~~~~~~~i~~v~fspdg~~l~~--~ 970 (1114)
.+ .......+.+++.++++++++.+.++.+..++...+......... ..............+.++ +..+.. .
T Consensus 105 ~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~ 182 (302)
T d2p4oa1 105 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNT 182 (302)
T ss_dssp EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEET
T ss_pred eccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCceeeecC
Confidence 11 123456789999999999999888998888888765422111100 001111111233455554 444444 4
Q ss_pred eCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccc
Q 001248 971 HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHP 1050 (1114)
Q Consensus 971 ~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1050 (1114)
..+.|..++..............+...+..++|++||.+.++...++.|..++... +...... .. .....+
T Consensus 183 ~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G-~~~~~~~----~~----~~~~~p 253 (302)
T d2p4oa1 183 EKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR-STTIIAQ----AE----QGVIGS 253 (302)
T ss_dssp TTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTC-CEEEEEC----GG----GTCTTE
T ss_pred CCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCC-CEEEEEe----cC----CCCCCc
Confidence 67788888876654333221111234567899999999888887889999998654 3332222 11 111346
Q ss_pred eEEEecC--CCCCeEEEEeCC
Q 001248 1051 LVIAAHP--QEPNEFALGLSD 1069 (1114)
Q Consensus 1051 ~~~~~~~--~d~~~l~s~~~D 1069 (1114)
.+++|.. .|++.|.+++..
T Consensus 254 t~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 254 TAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp EEEEECCSTTTTTEEEEEECT
T ss_pred eEEEEcCCCCCCCEEEEECCC
Confidence 6899942 267777766544
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.97 E-value=8.6e-08 Score=99.26 Aligned_cols=226 Identities=12% Similarity=0.049 Sum_probs=132.9
Q ss_pred EeccCCCCceEEEEcCCCCeEEEEEecCC--cEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC
Q 001248 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spdg~~ll~tg~~dg--~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1114)
.+..+...+...+|||||++|+++....+ .+.+.+..++.... +..+.+.+....|||
T Consensus 33 ~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~sp 92 (269)
T d2hqsa1 33 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VASFPRHNGAPAFSP 92 (269)
T ss_dssp EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE--------------------EECCSSCEEEEEECT
T ss_pred EEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeE--------------------EeeeecccccceecC
Confidence 55567888999999999998666655444 36666666655432 455677889999999
Q ss_pred CCCeEEEEeC-CCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCC--EEEEeCCCCcceeEeec
Q 001248 431 DGSLFGVAYS-RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT--IKVWDATNGAKQYIFEG 507 (1114)
Q Consensus 431 dg~~las~~~-dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~--i~iwd~~~~~~~~~~~~ 507 (1114)
||+.++.... ++...++......... .....+........+++++.. .+++...++. |.+.++..+.. ..+..
T Consensus 93 dg~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~i~~~~~~~~~~-~~~~~ 168 (269)
T d2hqsa1 93 DGSKLAFALSKTGSLNLYVMDLASGQI--RQVTDGRSNNTEPTWFPDSQN-LAFTSDQAGRPQVYKVNINGGAP-QRITW 168 (269)
T ss_dssp TSSEEEEEECTTSSCEEEEEETTTCCE--EECCCCSSCEEEEEECTTSSE-EEEEECTTSSCEEEEEETTSSCC-EECCC
T ss_pred CCCeeeEeeecCCccceeecccccccc--eeeeecccccccccccccccc-ceecccccCCceEeeeecccccc-eeeec
Confidence 9999988654 3333333333222111 123344455567788888886 4555555554 55556555543 33444
Q ss_pred cccCEEEEeeccCCCceEEEEEec-CCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCC
Q 001248 508 HEAPVYSVCPHHKENIQFIFSTAL-DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 586 (1114)
Q Consensus 508 h~~~v~~~~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~ 586 (1114)
+........|++ ++..++..+. .+...+|......................|+|||+
T Consensus 169 ~~~~~~~~~~sp--dg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~-------------------- 226 (269)
T d2hqsa1 169 EGSQNQDADVSS--DGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGT-------------------- 226 (269)
T ss_dssp SSSEEEEEEECT--TSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSS--------------------
T ss_pred cccccccccccc--ccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCC--------------------
Confidence 555555666655 4455555544 45555555544433333333444445556666666
Q ss_pred CEEEEEe---CCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcC
Q 001248 587 NRFLAAG---DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 628 (1114)
Q Consensus 587 ~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 628 (1114)
.|+-.+ ....|+++++..+.... +.... ..+...+|||
T Consensus 227 -~i~f~s~~~~~~~l~~~~~dg~~~~~-lt~~~--g~~~~p~WSP 267 (269)
T d2hqsa1 227 -MVIYSSSQGMGSVLNLVSTDGRFKAR-LPATD--GQVKFPAWSP 267 (269)
T ss_dssp -EEEEEEEETTEEEEEEEETTSCCEEE-CCCSS--SEEEEEEECC
T ss_pred -EEEEEEcCCCCcEEEEEECCCCCEEE-EeCCC--CcEEeEEeCC
Confidence 343322 34578899998766544 43322 2456778887
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.96 E-value=1.8e-07 Score=97.17 Aligned_cols=245 Identities=12% Similarity=0.140 Sum_probs=163.9
Q ss_pred ceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCC-C
Q 001248 753 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND-S 831 (1114)
Q Consensus 753 ~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~-~ 831 (1114)
....++++++|+.+++-..++.|++|+.+. ..+.. +.. .+ ...+.......+++..+. .
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G-------~~~~~-----~~~-~~-------~~~~~~~~p~~~~~~~~~~~ 83 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEG-------RFKFQ-----FGE-CG-------KRDSQLLYPNRVAVVRNSGD 83 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTTS-------CEEEE-----ECC-BS-------SSTTCBSSEEEEEEETTTTE
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCCC-------CEEEE-----ecc-cC-------CCcccccccccccccccccc
Confidence 457999999999887777788899887432 11110 000 00 000112233455655544 4
Q ss_pred EEEEEe--CCeEEEEEcCCCccccccC-CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEee--cccccCee
Q 001248 832 YVMSAS--GGKISLFNMMTFKTMATFM-PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL--KGHSKRIT 906 (1114)
Q Consensus 832 ~l~~~~--dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l--~~h~~~V~ 906 (1114)
++++.. ++.|..++. .+.....+. ........+++.+ +++++++....+.+.+++.. ++.+..+ ..+.....
T Consensus 84 ~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~ 160 (279)
T d1q7fa_ 84 IIVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPN 160 (279)
T ss_dssp EEEEECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEE
T ss_pred cceeccCCccccccccc-cccceeecCCCcccccceecccc-CCcEEEEeeccceeeEeccC-Cceeecccccccccccc
Confidence 444443 467888876 455555543 2345678899998 88888888878889888854 5555554 34667788
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE--eCCeEEEEEcCCCc
Q 001248 907 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLE 984 (1114)
Q Consensus 907 ~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~--~d~~i~iwd~~~~~ 984 (1114)
.+++.++++.+++....+.|++||........ +. ..+. ......+++.++|+.+++- .++.|.+|+. +|+
T Consensus 161 ~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~~~---~g-~~g~---~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~ 232 (279)
T d1q7fa_ 161 GVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQ---IG-GEGI---TNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQ 232 (279)
T ss_dssp EEEECSSSEEEEEEGGGTEEEEEETTCCEEEE---ES-CTTT---SCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSC
T ss_pred eeeeccceeEEeeeccccceeeeecCCceeee---ec-cccc---ccCCcccccccCCeEEEEECCCCcEEEEECC-CCC
Confidence 99999999999998889999999987632111 10 1111 1346889999999988773 3457999984 588
Q ss_pred eeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCee
Q 001248 985 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1029 (1114)
Q Consensus 985 ~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~ 1029 (1114)
.+..+...........|++.+||.+ ++++.+++|++|...+...
T Consensus 233 ~~~~~~~~~~~~~p~~vav~~dG~l-~V~~~n~~v~~fr~~~~~~ 276 (279)
T d1q7fa_ 233 LISALESKVKHAQCFDVALMDDGSV-VLASKDYRLYIYRYVQLAP 276 (279)
T ss_dssp EEEEEEESSCCSCEEEEEEETTTEE-EEEETTTEEEEEECSCCCC
T ss_pred EEEEEeCCCCCCCEeEEEEeCCCcE-EEEeCCCeEEEEEeeeecC
Confidence 7777765554567899999999975 4566899999999877643
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.95 E-value=8.8e-08 Score=98.35 Aligned_cols=239 Identities=9% Similarity=0.035 Sum_probs=154.6
Q ss_pred CCCCccEEEEeeCCCEEEEEe--CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceE
Q 001248 817 PEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV 894 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~ 894 (1114)
+......++++++|...++.. .+.+..++...................+++++ +++++++....+.+++++-.++..
T Consensus 12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~~~ 90 (260)
T d1rwia_ 12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQT 90 (260)
T ss_dssp SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECT-TCCEEEEETTTEEEEECTTCSCCE
T ss_pred CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcC-CCCEEEeeeeeceeeeeeecccee
Confidence 445678999999999766654 57777777654333222222234567889999 888888877777777776655554
Q ss_pred EEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCC
Q 001248 895 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHET 973 (1114)
Q Consensus 895 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~ 973 (1114)
+....+ .....++++.++++++++-.....+..++........ ....+. .....+++.++|+++++ ..++
T Consensus 91 ~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~----~~~~~~----~~p~~i~~~~~g~~~v~~~~~~ 161 (260)
T d1rwia_ 91 VLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV----LPFTGL----NDPDGVAVDNSGNVYVTDTDNN 161 (260)
T ss_dssp ECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEE----CCCCSC----CSCCEEEECTTCCEEEEEGGGT
T ss_pred eeeeee-eeecccccccccceeEeeccccccccccccccceeee----eeeccc----CCcceeeecCCCCEeeeccccc
Confidence 443333 3457899999999988877777777777776533211 111111 24578999999998777 4677
Q ss_pred eEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEE
Q 001248 974 QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVI 1053 (1114)
Q Consensus 974 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 1053 (1114)
.|..++........... ........|++.++|.++++....+.|..++....... .+. . ...-.|..+
T Consensus 162 ~i~~~d~~~~~~~~~~~--~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~-~~~------~---~~~~~P~~i 229 (260)
T d1rwia_ 162 RVVKLEAESNNQVVLPF--TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST-VLP------F---TGLNTPLAV 229 (260)
T ss_dssp EEEEECTTTCCEEECCC--SSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCE-ECC------C---CSCCCEEEE
T ss_pred cccccccccceeeeeec--cccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEE-EEc------c---CCCCCeEEE
Confidence 89999977554432221 33456789999999998887777888988886654322 221 0 111245689
Q ss_pred EecCCCCCeEEEEeCCCcEEEEeccCC
Q 001248 1054 AAHPQEPNEFALGLSDGGVHVFEPLES 1080 (1114)
Q Consensus 1054 ~~~~~d~~~l~s~~~Dg~v~vW~i~~~ 1080 (1114)
++++ +++++++-..++.| +.+.+-
T Consensus 230 ~~d~-~g~l~vad~~~~rI--~~i~~~ 253 (260)
T d1rwia_ 230 AVDS-DRTVYVADRGNDRV--VKLTSL 253 (260)
T ss_dssp EECT-TCCEEEEEGGGTEE--EEECCC
T ss_pred EEeC-CCCEEEEECCCCEE--EEEeCC
Confidence 9998 57777765555644 455443
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.94 E-value=2.8e-07 Score=95.66 Aligned_cols=241 Identities=12% Similarity=0.137 Sum_probs=164.1
Q ss_pred CccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCC------CCCCeEEEEEecCCCcEEEEE-eCCCcEEEEEccc
Q 001248 820 AVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP------PPPAATFLAFHPQDNNIIAIG-MDDSSIQIYNVRV 891 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~sp~d~~~la~g-~~dg~v~iwd~~~ 891 (1114)
....++++++|+.+++-. ++.|++||.+ ++.+..+.. .......+++.++.+.++++. +.++.|..++. .
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~ 101 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-Y 101 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-T
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-c
Confidence 467899999999777755 7899999965 555554421 122345677766345555443 34557777775 4
Q ss_pred ceEEEeec-ccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-
Q 001248 892 DEVKSKLK-GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV- 969 (1114)
Q Consensus 892 ~~~~~~l~-~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~- 969 (1114)
++....+. .......++++.++|+++++....+.+.+++.+...... ... ..+ ......+++.++|..+++
T Consensus 102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~---~g~-~~~---~~~~~~i~~d~~g~i~v~d 174 (279)
T d1q7fa_ 102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHK---FGC-SKH---LEFPNGVVVNDKQEIFISD 174 (279)
T ss_dssp SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEE---EEC-TTT---CSSEEEEEECSSSEEEEEE
T ss_pred ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCceeec---ccc-ccc---ccccceeeeccceeEEeee
Confidence 55555553 345667889999999988888877888888876522111 101 111 135678999999988877
Q ss_pred EeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEc-CCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCc
Q 001248 970 VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL-DATVCVFSAANLKLRCRINPSAYLPAGVSSSNV 1048 (1114)
Q Consensus 970 ~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~-Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v 1048 (1114)
...+.|.+||.. ++.+.++...++......|++.++|+.+++-.. ++.|.+|+ .+|+++..+.... ...
T Consensus 175 ~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~--------~~~ 244 (279)
T d1q7fa_ 175 NRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKV--------KHA 244 (279)
T ss_dssp GGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESS--------CCS
T ss_pred ccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCC--------CCC
Confidence 467899999975 666666655556667899999999997766443 45799998 5688877664111 112
Q ss_pred cceEEEecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1049 HPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1049 ~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
.|..++..| |+. |++++.++.|++|+.....
T Consensus 245 ~p~~vav~~-dG~-l~V~~~n~~v~~fr~~~~~ 275 (279)
T d1q7fa_ 245 QCFDVALMD-DGS-VVLASKDYRLYIYRYVQLA 275 (279)
T ss_dssp CEEEEEEET-TTE-EEEEETTTEEEEEECSCCC
T ss_pred CEeEEEEeC-CCc-EEEEeCCCeEEEEEeeeec
Confidence 455788888 565 5566789999999988764
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.86 E-value=1.2e-06 Score=92.02 Aligned_cols=256 Identities=14% Similarity=0.093 Sum_probs=152.8
Q ss_pred CCCCceEEEEcCCCCeEEEEEec-------CCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEc
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTN-------VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 429 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~-------dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 429 (1114)
.-.....++|.|+|+ ++++... +|+|..||..++........ ....-.+.-..++|.
T Consensus 16 ~~~g~EGpa~d~dG~-ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~---------------~~~~~~g~P~Gl~~~ 79 (314)
T d1pjxa_ 16 DIPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP---------------EVNGYGGIPAGCQCD 79 (314)
T ss_dssp CCTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEECC---------------EETTEECCEEEEEEC
T ss_pred CCCCCeEeEEeCCCC-EEEEECccccccccCCEEEEEECCCCcEEEEECC---------------ccccCCCcceeEEEe
Confidence 344567899999999 4554322 46799999888765431000 001111235689999
Q ss_pred CCCCeEEEEeCCCeEEEEEccCCceeeeeEeecccc-CCeeEEEecCCCCeeEEEEecC---------------CCCEEE
Q 001248 430 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITCGD---------------DKTIKV 493 (1114)
Q Consensus 430 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~-~~V~~v~~s~d~~~~~l~s~~~---------------d~~i~i 493 (1114)
++|..|+++...+.|...+.+++..........+.. ...+.++|.++|. +.+|-.. ++.|..
T Consensus 80 ~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~--lyvtd~~~~~~~~~~~~~~~~~~G~v~~ 157 (314)
T d1pjxa_ 80 RDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSIYC 157 (314)
T ss_dssp SSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEEEE
T ss_pred CCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCC--EEEecCccCcccccccceeccCCceEEE
Confidence 999988888777778888887654221111111111 1367899999998 5555321 233444
Q ss_pred EeCCCCcceeEeeccccCEEEEeeccCCCc---eEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEe
Q 001248 494 WDATNGAKQYIFEGHEAPVYSVCPHHKENI---QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 570 (1114)
Q Consensus 494 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~---~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~ 570 (1114)
++. .++... +...-...+.++|++..++ .+.++-+..+.|..||+......... .+.....
T Consensus 158 ~~~-dg~~~~-~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~--------~~~~~~~------ 221 (314)
T d1pjxa_ 158 FTT-DGQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK--------KVWGHIP------ 221 (314)
T ss_dssp ECT-TSCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE--------EEEEECC------
T ss_pred Eee-cCceeE-eeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCcccccee--------eEEEEcc------
Confidence 442 344332 2223344567787765543 24455566788888877543322110 0000000
Q ss_pred eecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEE-EEEeCCCcEEEEEcc
Q 001248 571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL-AVSTNDNGIKILATS 648 (1114)
Q Consensus 571 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l-~~~~~dg~i~iwd~~ 648 (1114)
+.......-++++.+|+..++....+.|.+||.+.++.+..+..+. ...++++|.||++.| ++.+.+|.|..+++.
T Consensus 222 ~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~--~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 222 GTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPF--EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp CCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSS--SCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred ccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCC--CCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence 0011123346778888888888889999999998888777776543 256889999999755 555667888777754
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.85 E-value=7.8e-07 Score=91.76 Aligned_cols=217 Identities=12% Similarity=0.154 Sum_probs=119.3
Q ss_pred cEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCC---eEEEEEccCCceeeee
Q 001248 382 DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH---IVQIYSYHGGDEVRQH 458 (1114)
Q Consensus 382 ~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg---~i~iwd~~~~~~~~~~ 458 (1114)
.|+|.|...+.... +..+...+...+|||||++||...... .+.+.+..++...
T Consensus 20 ~l~i~d~dG~~~~~--------------------l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~--- 76 (269)
T d2hqsa1 20 ELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR--- 76 (269)
T ss_dssp EEEEEETTSCSCEE--------------------EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE---
T ss_pred EEEEEcCCCCCcEE--------------------EecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee---
Confidence 57888877544432 334456788999999999999875443 3666676665533
Q ss_pred EeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCC-cceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEE
Q 001248 459 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 537 (1114)
Q Consensus 459 ~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~ 537 (1114)
.+..+.+......|+|+|+.+ +.....++...++..... .................++...+ ..+++...++...+
T Consensus 77 -~~~~~~~~~~~~~~spdg~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~i 153 (269)
T d2hqsa1 77 -QVASFPRHNGAPAFSPDGSKL-AFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQ-NLAFTSDQAGRPQV 153 (269)
T ss_dssp -EEECCSSCEEEEEECTTSSEE-EEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSS-EEEEEECTTSSCEE
T ss_pred -EEeeeecccccceecCCCCee-eEeeecCCccceeecccccccceeeeeccccccccccccccc-cceecccccCCceE
Confidence 345677888999999999973 333333433333332222 22222222333333334444333 34555555665444
Q ss_pred E--EcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEe-CCCe--EEEEECCCcceEEEe
Q 001248 538 W--LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFS--IKFWDMDSVQLLTSI 612 (1114)
Q Consensus 538 w--d~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~--i~iwd~~~~~~~~~~ 612 (1114)
| ++...... .............++|+++ .++..+ ..+. +.+.+...+.. ..+
T Consensus 154 ~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~---------------------~~~~~~~~~~~~~i~~~~~~~~~~-~~~ 210 (269)
T d2hqsa1 154 YKVNINGGAPQ-RITWEGSQNQDADVSSDGK---------------------FMVMVSSNGGQQHIAKQDLATGGV-QVL 210 (269)
T ss_dssp EEEETTSSCCE-ECCCSSSEEEEEEECTTSS---------------------EEEEEEECSSCEEEEEEETTTCCE-EEC
T ss_pred eeeecccccce-eeecccccccccccccccc---------------------eeEEEeecCCceeeeEeecccccc-eEe
Confidence 4 44433221 2222233344445555554 555544 3333 44445554443 222
Q ss_pred ccCCCCCCcCeEEEcCCCCEEEEEeCC---CcEEEEEccCC
Q 001248 613 DADGGLPASPRIRFNKDGCLLAVSTND---NGIKILATSDG 650 (1114)
Q Consensus 613 ~~~~~~~~v~~~~~s~d~~~l~~~~~d---g~i~iwd~~~~ 650 (1114)
. .. .......|||||+.|+..+.. ..|.++++..+
T Consensus 211 ~-~~--~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~ 248 (269)
T d2hqsa1 211 S-ST--FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR 248 (269)
T ss_dssp C-CS--SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred e-cC--ccccceEECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence 2 21 235678999999998866543 35778887665
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=2.7e-07 Score=103.01 Aligned_cols=359 Identities=12% Similarity=0.019 Sum_probs=187.9
Q ss_pred ecCCeEEEEEcCCCCCeeeecCCC---CeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEE---------eCCCe
Q 001248 530 ALDGKIKAWLYDNLGSRVDYEAPG---RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA---------GDDFS 597 (1114)
Q Consensus 530 ~~d~~i~~wd~~~~~~~~~~~~~~---~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~---------~~dg~ 597 (1114)
..+|.|.+||+.+.+....+.... ..+....+|||++ +++.. +..+.
T Consensus 34 ~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~---------------------~vl~~~~~~~~~r~s~~~~ 92 (465)
T d1xfda1 34 EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDRE---------------------YALFSYNVEPIYQHSYTGY 92 (465)
T ss_dssp CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSS---------------------EEEEEESCCCCSSSCCCSE
T ss_pred eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCC---------------------eEEEEEcccceeEeecccc
Confidence 456788999988776644333221 2344555666665 44433 34578
Q ss_pred EEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeecc-ccccccccCCCCCCCCcc
Q 001248 598 IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE-NLAYDASRTSENSKPTIS 676 (1114)
Q Consensus 598 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 676 (1114)
+.++|+.++..............+....|||||+.+|... ++.|.+.+..++. ..+... +....
T Consensus 93 ~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~-~~~lt~~g~~~~------------- 157 (465)
T d1xfda1 93 YVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQ-AIRVVSTGKEGV------------- 157 (465)
T ss_dssp EEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSC-CEEEECCCBTTT-------------
T ss_pred EEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCc-eEEEecccCcce-------------
Confidence 9999999887654433333334566789999999998876 4677777766552 222111 10000
Q ss_pred chhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEE
Q 001248 677 PISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISR 756 (1114)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~ 756 (1114)
+..|-. -|-.+. .-...-..
T Consensus 158 ----------------------------------------i~nG~~-----d~vyee---------------e~~~~~~a 177 (465)
T d1xfda1 158 ----------------------------------------IYNGLS-----DWLYEE---------------EILKTHIA 177 (465)
T ss_dssp ----------------------------------------EEEEEC-----CHHHHH---------------TTSSSSEE
T ss_pred ----------------------------------------eecccc-----chhhhh---------------hhccccce
Confidence 000000 000000 00111245
Q ss_pred EEEccCcceeeecccC-ceEEEEeecccc-----------cCCCCCccccccccccCCCCCccccccCCCC---CCCCCc
Q 001248 757 LIFTNSGNAILALASN-AIHLLWKWQRTE-----------RNSSGKATASVAPQLWQPPSGIMMTNDVTDS---NPEEAV 821 (1114)
Q Consensus 757 l~~s~~~~~l~~~~~d-g~i~vw~~~~~~-----------~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~---~~~~~v 821 (1114)
+.|||||+.|+....| ..+..+.+.... ....|.......+.++++.++.......... ....-+
T Consensus 178 ~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~ 257 (465)
T d1xfda1 178 HWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYI 257 (465)
T ss_dssp EEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEE
T ss_pred EEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCcccccee
Confidence 6678888877766543 444444443211 0111222222244566665554322111110 122236
Q ss_pred cEEEEeeCCCEEEEEeC-----CeEEEEEcCCCccccccCCC-CCC----eEEEEEecCCCcEEE---EEeCCC--cEEE
Q 001248 822 PCFALSKNDSYVMSASG-----GKISLFNMMTFKTMATFMPP-PPA----ATFLAFHPQDNNIIA---IGMDDS--SIQI 886 (1114)
Q Consensus 822 ~~v~~s~d~~~l~~~~d-----g~i~iwd~~~~~~~~~~~~~-~~~----i~~l~~sp~d~~~la---~g~~dg--~v~i 886 (1114)
..+.|++++++++...+ ..|.++|..++++...+... ... -....|++ +|+.++ ....+| .++.
T Consensus 258 ~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~-dg~~~~fi~~se~~g~~~ly~ 336 (465)
T d1xfda1 258 TMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSK-DGRKFFFIRAIPQGGRGKFYH 336 (465)
T ss_dssp EEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECT-TSCSEEEEEEECCSSSSCEEE
T ss_pred eeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEcc-CCCeeEEEEeeeecccCceEE
Confidence 67899999987776542 24888999988765443221 111 23467888 665332 122333 3444
Q ss_pred EEcc------cceEEEeecccccCeeEE-EEcCCCCEEE-EEeCCC--cEEEEeC--CCCccccccccccCCCCCCCCCC
Q 001248 887 YNVR------VDEVKSKLKGHSKRITGL-AFSHALNVLV-SSGADS--QLCVWSS--DGWEKQKNRFLQIPTGRTPTAQS 954 (1114)
Q Consensus 887 wd~~------~~~~~~~l~~h~~~V~~l-~~s~d~~~l~-s~s~D~--~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~ 954 (1114)
+++. .++.+..+....-.|+.+ +|..+++.+. ++..++ .-.+|.+ ..+.. ..++..... ....
T Consensus 337 ~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~--~~~lt~~~~---~~~~ 411 (465)
T d1xfda1 337 ITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFN--RQCLSCDLV---ENCT 411 (465)
T ss_dssp EEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCC--CBCSSTTSS---SSCC
T ss_pred EEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCc--ceeeccccC---CCCC
Confidence 4332 233444555445566665 6888877765 444432 2335544 33222 122221111 1134
Q ss_pred ceEEEEccCCcEEEEEeC----CeEEEEEcCCCceeeeee
Q 001248 955 DTRVQFHQDQIHFLVVHE----TQLAIFETTKLECVKQWV 990 (1114)
Q Consensus 955 i~~v~fspdg~~l~~~~d----~~i~iwd~~~~~~~~~~~ 990 (1114)
...+.|||+|++++.... -.+.+++..+++.+..+.
T Consensus 412 ~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~Le 451 (465)
T d1xfda1 412 YFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDLE 451 (465)
T ss_dssp CCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEEE
T ss_pred EEEEEECCCCCEEEEEeecCCCCeEEEEECCCCCEEEEEc
Confidence 678999999999987322 357788887777777665
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.83 E-value=3.1e-07 Score=94.10 Aligned_cols=240 Identities=9% Similarity=0.030 Sum_probs=143.6
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
+......++++++|..+++..+..+.|..++......... ...+ ......++++++|++++
T Consensus 12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~------------------~~~~-~~~p~gvav~~~g~i~v 72 (260)
T d1rwia_ 12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL------------------PFNG-LYQPQGLAVDGAGTVYV 72 (260)
T ss_dssp SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEEC------------------CCCS-CCSCCCEEECTTCCEEE
T ss_pred CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEe------------------ccCC-ccCceEEEEcCCCCEEE
Confidence 4456789999999995444445567777777664433220 0111 12457799999999888
Q ss_pred EEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEe
Q 001248 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 516 (1114)
Q Consensus 437 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~ 516 (1114)
+....+.+++++-.++..+. .. .......++++.++++ ++++-..+..+..++...................++
T Consensus 73 ~d~~~~~i~~~~~~~~~~~~---~~-~~~~~p~~iavd~~g~--i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~ 146 (260)
T d1rwia_ 73 TDFNNRVVTLAAGSNNQTVL---PF-DGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVA 146 (260)
T ss_dssp EETTTEEEEECTTCSCCEEC---CC-CSCCSEEEEEECTTCC--EEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEE
T ss_pred eeeeeceeeeeeeccceeee---ee-eeeeecccccccccce--eEeeccccccccccccccceeeeeeecccCCcceee
Confidence 77776767666555444332 22 2234578999999998 566666666677777554332221112223445677
Q ss_pred eccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCC
Q 001248 517 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF 596 (1114)
Q Consensus 517 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 596 (1114)
+. +++.++++...++.|..++.+................. ++++++++++++....+
T Consensus 147 ~~--~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~g---------------------i~~d~~g~l~vsd~~~~ 203 (260)
T d1rwia_ 147 VD--NSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWG---------------------IAVDEAGTVYVTEHNTN 203 (260)
T ss_dssp EC--TTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEE---------------------EEECTTCCEEEEETTTT
T ss_pred ec--CCCCEeeeccccccccccccccceeeeeeccccCCCcc---------------------ceeeeeeeeeeeecCCC
Confidence 64 45578888888888999987654332221122222333 44555555666666788
Q ss_pred eEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEE
Q 001248 597 SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA 646 (1114)
Q Consensus 597 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd 646 (1114)
.|..++..... ...+. .........++++++|+++++-..++.|+.++
T Consensus 204 ~i~~~~~~~~~-~~~~~-~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~ 251 (260)
T d1rwia_ 204 QVVKLLAGSTT-STVLP-FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT 251 (260)
T ss_dssp EEEEECTTCSC-CEECC-CCSCCCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred EEEEEeCCCCe-EEEEc-cCCCCCeEEEEEeCCCCEEEEECCCCEEEEEe
Confidence 88888765443 22222 12223456899999998887767777666554
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=2.1e-06 Score=95.67 Aligned_cols=232 Identities=12% Similarity=0.105 Sum_probs=130.1
Q ss_pred EEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeC----
Q 001248 365 DFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS---- 440 (1114)
Q Consensus 365 ~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~---- 440 (1114)
.|.+++.+ +.. ..+|.|.+||+.+++..... + . ..-..-.+....|||||++++....
T Consensus 23 ~W~~~~~~-~~~-~~~g~i~~~~~~~~~~~~l~-----~---------~--~~~~~~~~~~~~~SpD~~~vl~~~~~~~~ 84 (465)
T d1xfda1 23 KWISDTEF-IYR-EQKGTVRLWNVETNTSTVLI-----E---------G--KKIESLRAIRYEISPDREYALFSYNVEPI 84 (465)
T ss_dssp CBSSSSCB-CCC-CSSSCEEEBCGGGCCCEEEE-----C---------T--TTTTTTTCSEEEECTTSSEEEEEESCCCC
T ss_pred EEeCCCcE-EEE-eCCCcEEEEECCCCCEEEEE-----c---------C--ccccccccceeEECCCCCeEEEEEcccce
Confidence 58888885 433 56789999999988754311 0 0 0112236778899999999888743
Q ss_pred -----CCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEee-ccccCE--
Q 001248 441 -----RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEAPV-- 512 (1114)
Q Consensus 441 -----dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~h~~~v-- 512 (1114)
.+.+.|+|+.++.... +.........+....|||||+.++++. ++.|.+.+..++..++... +..+.|
T Consensus 85 ~r~s~~~~~~i~d~~~~~~~~-l~~~~~~~~~l~~~~wSPDG~~iafv~---~~nl~~~~~~~~~~~~lt~~g~~~~i~n 160 (465)
T d1xfda1 85 YQHSYTGYYVLSKIPHGDPQS-LDPPEVSNAKLQYAGWGPKGQQLIFIF---ENNIYYCAHVGKQAIRVVSTGKEGVIYN 160 (465)
T ss_dssp SSSCCCSEEEEEESSSCCCEE-CCCTTCCSCCCSBCCBCSSTTCEEEEE---TTEEEEESSSSSCCEEEECCCBTTTEEE
T ss_pred eEeeccccEEEEEccCCceee-ccCccCCccccceeeeccCCceEEEEe---cceEEEEecCCCceEEEecccCcceeec
Confidence 4678999999887432 222333445677899999999643332 5678888887776654332 222222
Q ss_pred ---------------EEEeeccCCCceEEEEEec-CCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccc
Q 001248 513 ---------------YSVCPHHKENIQFIFSTAL-DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 576 (1114)
Q Consensus 513 ---------------~~~~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~ 576 (1114)
.++-| +|||+.|+.... +..+..+.+..... .....+..+.+..-|..
T Consensus 161 G~~d~vyeee~~~~~~a~~W--SPDgk~iaf~~~D~s~V~~~~~~~~~~-----~~~p~~~~~~Yp~~G~~--------- 224 (465)
T d1xfda1 161 GLSDWLYEEEILKTHIAHWW--SPDGTRLAYAAINDSRVPIMELPTYTG-----SIYPTVKPYHYPKAGSE--------- 224 (465)
T ss_dssp EECCHHHHHTTSSSSEEEEE--CTTSSEEEEEEEECTTSCEEEECCCSS-----SSSCCCEEEECCBTTSC---------
T ss_pred cccchhhhhhhccccceEEE--CCCCCeEEEEEecccccceeecccccc-----cccceeeeeeccccCCC---------
Confidence 23334 556677776653 33344443321100 00111222222222210
Q ss_pred eeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCC----CCCCcCeEEEcCCCCEEEEEeC-C---CcEEEEEcc
Q 001248 577 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVSTN-D---NGIKILATS 648 (1114)
Q Consensus 577 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~s~d~~~l~~~~~-d---g~i~iwd~~ 648 (1114)
.....+.++|+.++.......... ...-+..+.|++++++++...+ + ..+.++|..
T Consensus 225 ----------------np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~ 288 (465)
T d1xfda1 225 ----------------NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDAT 288 (465)
T ss_dssp ----------------CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETT
T ss_pred ----------------CCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCC
Confidence 011246778876665433221111 1112467899999987665433 2 247778888
Q ss_pred CC
Q 001248 649 DG 650 (1114)
Q Consensus 649 ~~ 650 (1114)
++
T Consensus 289 tg 290 (465)
T d1xfda1 289 TG 290 (465)
T ss_dssp TC
T ss_pred CC
Confidence 77
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.81 E-value=1.1e-06 Score=92.92 Aligned_cols=233 Identities=12% Similarity=0.092 Sum_probs=148.4
Q ss_pred CCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeC----CCcEEEEEcccce
Q 001248 819 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD----DSSIQIYNVRVDE 893 (1114)
Q Consensus 819 ~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~----dg~v~iwd~~~~~ 893 (1114)
..+..++|+++|++.++-. +++|..|+..+......+.........+++++ +|+++++... .+.+...+..++.
T Consensus 40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~~ 118 (319)
T d2dg1a1 40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDN 118 (319)
T ss_dssp CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCCCce
Confidence 3456899999998666654 78999999887766555555556788999999 8888876543 2345555555544
Q ss_pred EEEeecc--cccCeeEEEEcCCCCEEEEEeCC------CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCc
Q 001248 894 VKSKLKG--HSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI 965 (1114)
Q Consensus 894 ~~~~l~~--h~~~V~~l~~s~d~~~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~ 965 (1114)
....... -....+.+++.++|++.++.... +.+..++.+..... ...... .....++|+||++
T Consensus 119 ~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~--~~~~~~-------~~pnGia~s~dg~ 189 (319)
T d2dg1a1 119 LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT--PIIQNI-------SVANGIALSTDEK 189 (319)
T ss_dssp CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE--EEEEEE-------SSEEEEEECTTSS
T ss_pred eeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeE--EEeecc-------ceeeeeeeccccc
Confidence 3333322 12347789999999977764321 22444444432211 111111 1347899999998
Q ss_pred EEEEE--eCCeEEEEEcCCCc-eeeee-----ecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCc
Q 001248 966 HFLVV--HETQLAIFETTKLE-CVKQW-----VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSA 1037 (1114)
Q Consensus 966 ~l~~~--~d~~i~iwd~~~~~-~~~~~-----~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~ 1037 (1114)
.|.++ ..+.|..|++.... ..... ...........|++..+|.+.++....+.|.+|| .+|+.+.++.
T Consensus 190 ~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~-p~G~~l~~i~--- 265 (319)
T d2dg1a1 190 VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFN-KRGYPIGQIL--- 265 (319)
T ss_dssp EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEEC-TTSCEEEEEE---
T ss_pred eEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEEC-CCCcEEEEEe---
Confidence 77663 67889999876432 11111 1111123367899999999888888899999999 5799998887
Q ss_pred ccCCCCCCCCccceEEEecCCCCCeEEEEe
Q 001248 1038 YLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1067 (1114)
Q Consensus 1038 ~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~ 1067 (1114)
+|.........+.+++|.+. .+.+++..
T Consensus 266 -~P~~~~~~~~~~~~~~~~~~-~~~~~~t~ 293 (319)
T d2dg1a1 266 -IPGRDEGHMLRSTHPQFIPG-TNQLIICS 293 (319)
T ss_dssp -CTTGGGTCSCBCCEEEECTT-SCEEEEEE
T ss_pred -CCCcCCCcCceeeeEEEeCC-CCEEEEEc
Confidence 34322222344558999884 55555544
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.79 E-value=6.6e-07 Score=94.20 Aligned_cols=238 Identities=15% Similarity=0.153 Sum_probs=149.9
Q ss_pred CccEEEEeeCCCEEEEEe--------CCeEEEEEcCCCccccccCC----CCCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 001248 820 AVPCFALSKNDSYVMSAS--------GGKISLFNMMTFKTMATFMP----PPPAATFLAFHPQDNNIIAIGMDDSSIQIY 887 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~~~~--------dg~i~iwd~~~~~~~~~~~~----~~~~i~~l~~sp~d~~~la~g~~dg~v~iw 887 (1114)
....++|.++|++.++.. +|+|..||..++........ .......++|++ +++.|+++.....|..+
T Consensus 19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~-dg~~l~vad~~~~i~~~ 97 (314)
T d1pjxa_ 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADMRLGLLVV 97 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEETTTEEEEE
T ss_pred CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeC-CCCEEEEEECCCeEEEE
Confidence 356789999999887643 36789999887664433221 122357899999 78777777777778888
Q ss_pred EcccceEEEeecccc----cCeeEEEEcCCCCEEEEEeC---------------CCcEEEEeCCCCccccccccccCCCC
Q 001248 888 NVRVDEVKSKLKGHS----KRITGLAFSHALNVLVSSGA---------------DSQLCVWSSDGWEKQKNRFLQIPTGR 948 (1114)
Q Consensus 888 d~~~~~~~~~l~~h~----~~V~~l~~s~d~~~l~s~s~---------------D~~v~iwd~~~~~~~~~~~~~~~~~~ 948 (1114)
+...+.......... ...+.+++.++|++.++-.. +|.|..++.+. +.. ......
T Consensus 98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~--~~~~~~--- 171 (314)
T d1pjxa_ 98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMI--QVDTAF--- 171 (314)
T ss_dssp ETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEE--EEEEEE---
T ss_pred eCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-cee--EeeCCc---
Confidence 877554222111111 13578999999998887432 22344444332 110 111100
Q ss_pred CCCCCCceEEEEccCCc----EEEE--EeCCeEEEEEcCCCceeee---ee-c-CCCCcCeeEEEECCCCCEEEEEEcCC
Q 001248 949 TPTAQSDTRVQFHQDQI----HFLV--VHETQLAIFETTKLECVKQ---WV-P-RESSAPITHATFSCDSQLVYACFLDA 1017 (1114)
Q Consensus 949 ~~~~~~i~~v~fspdg~----~l~~--~~d~~i~iwd~~~~~~~~~---~~-~-~~h~~~v~~l~~s~dg~~l~s~s~Dg 1017 (1114)
.....++|+|++. .|.+ +..+.|..|++.....+.. +. . ..+......+++..+|++.++....+
T Consensus 172 ----~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g 247 (314)
T d1pjxa_ 172 ----QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS 247 (314)
T ss_dssp ----SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred ----ceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCC
Confidence 1236889999874 4444 3667888888764432221 11 1 11233467899999999888777889
Q ss_pred eEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCC-eEEEEeCCCcEEEEeccC
Q 001248 1018 TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1018 ~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~-~l~s~~~Dg~v~vW~i~~ 1079 (1114)
.|.+||.++++.+..+. .+. -.+.+++|.| |++ +.++.+.+|.|...++..
T Consensus 248 ~I~~~dp~~g~~~~~i~----~p~------~~~t~~afg~-d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 248 HIEVFGPDGGQPKMRIR----CPF------EKPSNLHFKP-QTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEECTTCBSCSEEEE----CSS------SCEEEEEECT-TSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEEeCCCCEEEEEEE----CCC------CCEEEEEEeC-CCCEEEEEECCCCcEEEEECCC
Confidence 99999999888877665 221 2345799988 566 456666778777776543
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.70 E-value=1.8e-05 Score=83.23 Aligned_cols=243 Identities=13% Similarity=0.077 Sum_probs=148.8
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
....+..++|.++|+ |.++-...+.|..|+.++++.... ..........++|++||++++
T Consensus 38 ~~~~lEG~~~D~~G~-Ly~~D~~~g~I~ri~p~g~~~~~~-------------------~~~~~~~p~gla~~~dG~l~v 97 (319)
T d2dg1a1 38 KGLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRP-------------------FVSHKANPAAIKIHKDGRLFV 97 (319)
T ss_dssp SCCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEE-------------------EECSSSSEEEEEECTTSCEEE
T ss_pred CCcCcEeCEECCCCC-EEEEECCCCEEEEEECCCCeEEEE-------------------EeCCCCCeeEEEECCCCCEEE
Confidence 344567999999998 788877889999999887654431 223445678999999999888
Q ss_pred EEeCC----CeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecC------CCCEEEEeCCCCcceeEee
Q 001248 437 VAYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD------DKTIKVWDATNGAKQYIFE 506 (1114)
Q Consensus 437 s~~~d----g~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~ 506 (1114)
+...+ +.+...+..++.... ...-..-....+.+++.++|. +.++... .+.+..++.. ++.+..+.
T Consensus 98 a~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~nd~~~d~~G~--l~vtd~~~~~~~~~g~v~~~~~d-g~~~~~~~ 173 (319)
T d2dg1a1 98 CYLGDFKSTGGIFAATENGDNLQD-IIEDLSTAYCIDDMVFDSKGG--FYFTDFRGYSTNPLGGVYYVSPD-FRTVTPII 173 (319)
T ss_dssp EECTTSSSCCEEEEECTTSCSCEE-EECSSSSCCCEEEEEECTTSC--EEEEECCCBTTBCCEEEEEECTT-SCCEEEEE
T ss_pred EecCCCccceeEEEEcCCCceeee-eccCCCcccCCcceeEEeccc--eeecccccccccCcceeEEEecc-cceeEEEe
Confidence 76432 234444444443222 111111123578899999998 5555332 1235555543 33344443
Q ss_pred ccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCC
Q 001248 507 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 586 (1114)
Q Consensus 507 ~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~ 586 (1114)
..-...+.++|+++.+ .+.++-+..+.|..|+++.......... ........+ .....-++++.+|
T Consensus 174 ~~~~~pnGia~s~dg~-~lyvad~~~~~I~~~d~~~~g~~~~~~~-----~~~~~~~~~--------~~~PdGl~vD~~G 239 (319)
T d2dg1a1 174 QNISVANGIALSTDEK-VLWVTETTANRLHRIALEDDGVTIQPFG-----ATIPYYFTG--------HEGPDSCCIDSDD 239 (319)
T ss_dssp EEESSEEEEEECTTSS-EEEEEEGGGTEEEEEEECTTSSSEEEEE-----EEEEEECCS--------SSEEEEEEEBTTC
T ss_pred eccceeeeeeeccccc-eEEEecccCCceEEEEEcCCCceecccc-----ceeeeccCC--------ccceeeeeEcCCC
Confidence 3344567788765432 3446666788999998865432211000 000000000 0112346778888
Q ss_pred CEEEEEeCCCeEEEEECCCcceEEEeccCC----CCCCcCeEEEcCCCCEEEEEeC
Q 001248 587 NRFLAAGDDFSIKFWDMDSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVSTN 638 (1114)
Q Consensus 587 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~s~d~~~l~~~~~ 638 (1114)
+..++....+.|.+||. .|+.+..+.... +...+++++|.+++..+++.+.
T Consensus 240 ~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 240 NLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp CEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred CEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence 88888889999999996 688888876542 2335789999998877776654
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.36 E-value=2.6e-05 Score=80.39 Aligned_cols=93 Identities=13% Similarity=0.098 Sum_probs=64.5
Q ss_pred EEcCC--CCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeC-C
Q 001248 365 DFHPV--QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS-R 441 (1114)
Q Consensus 365 ~~spd--g~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~-d 441 (1114)
..||| |++++++. +|.|.+.|+.+++... +..+.+.+...+|||||++||.... +
T Consensus 5 ~~sPdi~G~~v~f~~--~~dl~~~d~~~g~~~~--------------------Lt~~~~~~~~p~~SPDG~~iaf~~~~~ 62 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC--CDDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIAIRVMRG 62 (281)
T ss_dssp CEEEEEETTEEEEEE--TTEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEEEEEEES
T ss_pred ccCCCCCCCEEEEEe--CCcEEEEECCCCCEEE--------------------EecCCCcccCEEECCCCCEEEEEEeeC
Confidence 46899 99866663 5779999999887653 5566778899999999999997642 1
Q ss_pred -----CeEEEEEccCCceeeeeEe---eccccCCeeEEEecCCCCe
Q 001248 442 -----HIVQIYSYHGGDEVRQHLE---IDAHVGGVNDIAFSHPNKQ 479 (1114)
Q Consensus 442 -----g~i~iwd~~~~~~~~~~~~---l~~h~~~V~~v~~s~d~~~ 479 (1114)
..|.+++..+++..+.... ...........+|+|||+.
T Consensus 63 ~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~ 108 (281)
T d1k32a2 63 SSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNL 108 (281)
T ss_dssp TTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCE
T ss_pred CCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCE
Confidence 2377777777764431000 0112234678899999995
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.33 E-value=0.00018 Score=74.11 Aligned_cols=220 Identities=8% Similarity=0.024 Sum_probs=144.2
Q ss_pred cEEEEeeCCCEEEEEe--CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeec
Q 001248 822 PCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK 899 (1114)
Q Consensus 822 ~~v~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~ 899 (1114)
.+..|++....|.... .++|..||..+++.. .+. ....+.++++.+ ++.++++ +.+ .|.++|..+++......
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~-dg~l~va-~~~-gl~~~d~~tg~~~~l~~ 95 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKIS-DSKQLIA-SDD-GLFLRDTATGVLTLHAE 95 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEE-TTEEEEE-ETT-EEEEEETTTCCEEEEEC
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEec-CCCEEEE-EeC-ccEEeecccceeeEEee
Confidence 3566777555555544 688999999887543 232 345688999998 7877764 455 58899999886543222
Q ss_pred --c--cccCeeEEEEcCCCCEEEEEeCC----CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-
Q 001248 900 --G--HSKRITGLAFSHALNVLVSSGAD----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV- 970 (1114)
Q Consensus 900 --~--h~~~V~~l~~s~d~~~l~s~s~D----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~- 970 (1114)
. ....++.+.+.|+|++.++...+ +.-.+|.+..++... ..... .....++|+++++.+..+
T Consensus 96 ~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~-----~~~~~----~~~Ng~~~s~d~~~l~~~d 166 (295)
T d2ghsa1 96 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTK-----LFADI----SIPNSICFSPDGTTGYFVD 166 (295)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEE-----EEEEE----SSEEEEEECTTSCEEEEEE
T ss_pred eecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEE-----Eeecc----CCcceeeecCCCceEEEee
Confidence 1 12357889999999987765432 344666665543211 11111 134789999999987764
Q ss_pred -eCCeEEEEEcCCCc------eeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCC
Q 001248 971 -HETQLAIFETTKLE------CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV 1043 (1114)
Q Consensus 971 -~d~~i~iwd~~~~~------~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~ 1043 (1114)
..+.|..|++.... ........+-......+++..+|.+.++.-..+.|..|| .+|+++..+. +|.
T Consensus 167 t~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~----lP~-- 239 (295)
T d2ghsa1 167 TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD-TDGNHIARYE----VPG-- 239 (295)
T ss_dssp TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC-TTCCEEEEEE----CSC--
T ss_pred cccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec-CCCcEeeEec----CCC--
Confidence 56788888864321 111111223345678999999999888777788999999 6789998887 443
Q ss_pred CCCCccceEEEecCCCCCeEEEE
Q 001248 1044 SSSNVHPLVIAAHPQEPNEFALG 1066 (1114)
Q Consensus 1044 ~~~~v~~~~~~~~~~d~~~l~s~ 1066 (1114)
-.+++++|-..|.+.|++.
T Consensus 240 ----~~~T~~~FGG~d~~~LyvT 258 (295)
T d2ghsa1 240 ----KQTTCPAFIGPDASRLLVT 258 (295)
T ss_dssp ----SBEEEEEEESTTSCEEEEE
T ss_pred ----CceEEEEEeCCCCCEEEEE
Confidence 2356899975466666544
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.31 E-value=1e-05 Score=83.54 Aligned_cols=199 Identities=15% Similarity=0.121 Sum_probs=117.6
Q ss_pred EEeeC--CCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeC-C-----CcEEEEEcccceEEE
Q 001248 825 ALSKN--DSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-D-----SSIQIYNVRVDEVKS 896 (1114)
Q Consensus 825 ~~s~d--~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~-d-----g~v~iwd~~~~~~~~ 896 (1114)
.+||| |+.+|..++|.|.+.|+.+++. +.+..+...+...+||| ||+.||.... + ..|++++..+++...
T Consensus 5 ~~sPdi~G~~v~f~~~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SP-DG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~ 82 (281)
T d1k32a2 5 LLNPDIHGDRIIFVCCDDLWEHDLKSGST-RKIVSNLGVINNARFFP-DGRKIAIRVMRGSSLNTADLYFYNGENGEIKR 82 (281)
T ss_dssp CEEEEEETTEEEEEETTEEEEEETTTCCE-EEEECSSSEEEEEEECT-TSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred ccCCCCCCCEEEEEeCCcEEEEECCCCCE-EEEecCCCcccCEEECC-CCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence 46899 9999988889999999988775 45665677889999999 8888886542 2 247788887776543
Q ss_pred eec------ccccCeeEEEEcCCCCEEEEEeCC------CcEEEEeCCCCccccc--------------ccccc--C-C-
Q 001248 897 KLK------GHSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKN--------------RFLQI--P-T- 946 (1114)
Q Consensus 897 ~l~------~h~~~V~~l~~s~d~~~l~s~s~D------~~v~iwd~~~~~~~~~--------------~~~~~--~-~- 946 (1114)
... .........+|+|||+.|+..... ..+...+......... ..... . .
T Consensus 83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (281)
T d1k32a2 83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELP 162 (281)
T ss_dssp CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCT
T ss_pred eeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecCCccceeeecCCCeEEEeeccccc
Confidence 221 122345678999999998875332 1233444433221100 00000 0 0
Q ss_pred -------CC----------------CCCCCCceEEEEccCCcEEEEE--eCCeEEEEEcCCCceeeeeecCCCCcCeeEE
Q 001248 947 -------GR----------------TPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLECVKQWVPRESSAPITHA 1001 (1114)
Q Consensus 947 -------~~----------------~~~~~~i~~v~fspdg~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l 1001 (1114)
+. ...........++++..+.... ....|.++|+.+++...... ... ....
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~lt~--~~~--~~~~ 238 (281)
T d1k32a2 163 HWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTS--FTD--YYPR 238 (281)
T ss_dssp TSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCC--CCS--SCEE
T ss_pred eeeeeccCCcceeeeeccccceeeccCCccccceeeeeccccceecccccccceEEEeCCCCceEEeec--CCC--cccc
Confidence 00 0000111223333333222221 23467888887766543221 112 2334
Q ss_pred EECCCCCEEEEEEcCCeEEEEEcCCCeee
Q 001248 1002 TFSCDSQLVYACFLDATVCVFSAANLKLR 1030 (1114)
Q Consensus 1002 ~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~ 1030 (1114)
.|||||+.|+.. .++.|+++|+++++..
T Consensus 239 ~~SpDG~~I~f~-~~~~l~~~d~~~g~~~ 266 (281)
T d1k32a2 239 HLNTDGRRILFS-KGGSIYIFNPDTEKIE 266 (281)
T ss_dssp EEEESSSCEEEE-ETTEEEEECTTTCCEE
T ss_pred cCcCCCCEEEEE-eCCEEEEEECCCCCEE
Confidence 689999998865 4789999999988765
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.16 E-value=0.00064 Score=69.85 Aligned_cols=232 Identities=12% Similarity=0.071 Sum_probs=145.0
Q ss_pred eEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCC
Q 001248 362 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR 441 (1114)
Q Consensus 362 ~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d 441 (1114)
-+..|.+....|..+--..+.|.-||..+++... |. ....+.++++.++|.+++++ .+
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~------~~---------------~~~~~~~i~~~~dg~l~va~-~~ 78 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKTV------HA---------------LPFMGSALAKISDSKQLIAS-DD 78 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE------EE---------------CSSCEEEEEEEETTEEEEEE-TT
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEE------EE---------------CCCCcEEEEEecCCCEEEEE-eC
Confidence 4677888666567776667899999999886532 11 12368899999999877754 45
Q ss_pred CeEEEEEccCCceeeeeEeeccc--cCCeeEEEecCCCCeeEEEEec----CCCCEEEEeCCCCcceeEeeccccCEEEE
Q 001248 442 HIVQIYSYHGGDEVRQHLEIDAH--VGGVNDIAFSHPNKQLCVITCG----DDKTIKVWDATNGAKQYIFEGHEAPVYSV 515 (1114)
Q Consensus 442 g~i~iwd~~~~~~~~~~~~l~~h--~~~V~~v~~s~d~~~~~l~s~~----~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 515 (1114)
| +.++|..+++... ....... ...++.+.+.++|. +.++.. ..+.-.+|.+..++...... .-...+.+
T Consensus 79 g-l~~~d~~tg~~~~-l~~~~~~~~~~~~nd~~vd~~G~--iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~-~~~~~Ng~ 153 (295)
T d2ghsa1 79 G-LFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVAKGKVTKLFA-DISIPNSI 153 (295)
T ss_dssp E-EEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEETTEEEEEEE-EESSEEEE
T ss_pred c-cEEeecccceeeE-EeeeecCCCcccceeeEECCCCC--EEEEeccccccccceeEeeecCCcEEEEee-ccCCccee
Confidence 4 8999999886432 2122211 22578999999998 444432 12345677777776544443 23445677
Q ss_pred eeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCC
Q 001248 516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 595 (1114)
Q Consensus 516 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 595 (1114)
+|+++.+ .++++.+..+.|..++++.......- .. .+.....+ .......++++.+|++.++.-..
T Consensus 154 ~~s~d~~-~l~~~dt~~~~I~~~~~d~~~~~~~~---~~---~~~~~~~~-------~~g~pdG~~vD~~GnlWva~~~~ 219 (295)
T d2ghsa1 154 CFSPDGT-TGYFVDTKVNRLMRVPLDARTGLPTG---KA---EVFIDSTG-------IKGGMDGSVCDAEGHIWNARWGE 219 (295)
T ss_dssp EECTTSC-EEEEEETTTCEEEEEEBCTTTCCBSS---CC---EEEEECTT-------SSSEEEEEEECTTSCEEEEEETT
T ss_pred eecCCCc-eEEEeecccceeeEeeeccccccccc---ce---EEEeccCc-------ccccccceEEcCCCCEEeeeeCC
Confidence 7765443 35666677888988887643221100 00 00000000 01133446667777777777788
Q ss_pred CeEEEEECCCcceEEEeccCCCCCCcCeEEEc-CCCCEEEEEe
Q 001248 596 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVST 637 (1114)
Q Consensus 596 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~~~~ 637 (1114)
+.|..||. .|+.+..+.... ..+++++|- +|.+.|++.+
T Consensus 220 g~V~~~dp-~G~~~~~i~lP~--~~~T~~~FGG~d~~~LyvTt 259 (295)
T d2ghsa1 220 GAVDRYDT-DGNHIARYEVPG--KQTTCPAFIGPDASRLLVTS 259 (295)
T ss_dssp TEEEEECT-TCCEEEEEECSC--SBEEEEEEESTTSCEEEEEE
T ss_pred CceEEecC-CCcEeeEecCCC--CceEEEEEeCCCCCEEEEEE
Confidence 99999995 688888887653 357899996 5766665543
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.85 E-value=0.0073 Score=68.16 Aligned_cols=59 Identities=14% Similarity=0.120 Sum_probs=44.1
Q ss_pred CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeC
Q 001248 973 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 973 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
|.|.-||..+++.+-..... .++.+-.++-.|.+++.|+.||.++-+|..+|+.+-++.
T Consensus 453 G~l~A~D~~TG~~~W~~~~~---~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~ 511 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKMER---FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (596)
T ss_dssp EEEEEECTTTCCEEEEEEES---SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ceEEEEeCCCCceecccCCC---CCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEE
Confidence 57888999999887654422 222222233467788889999999999999999998887
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.79 E-value=0.011 Score=66.30 Aligned_cols=138 Identities=9% Similarity=-0.077 Sum_probs=75.7
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCCcee
Q 001248 907 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECV 986 (1114)
Q Consensus 907 ~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~ 986 (1114)
..+++|+...++....+....+........ .+.. .....+...+..........|.|.-+|+.+++.+
T Consensus 390 ~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~---------~~~~---~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~ 457 (571)
T d2ad6a1 390 VDSYDPESRTLYAGLNHICMDWEPFMLPYR---------AGQF---FVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAK 457 (571)
T ss_dssp BCEEETTTTEEEEEEECEEEEEEECCCCCC---------TTSC---CCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEE
T ss_pred cceECCCCceEEEecccccccccccccccc---------CCcc---ccccceeeccccCCcccCCcccEEEeccCCCcee
Confidence 468899988888887765444332221000 0000 0111222222111111122367888999999987
Q ss_pred eeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEE
Q 001248 987 KQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG 1066 (1114)
Q Consensus 987 ~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~ 1066 (1114)
-+..... +..+-.++-.+.++++|+.||.++-+|.++|+.+-++. ++.+ +...-+.|..+..+++++.
T Consensus 458 W~~~~~~---~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~----l~~~-----~~a~P~ty~~dGkqYi~v~ 525 (571)
T d2ad6a1 458 WTKWEKF---AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK----MPSG-----GIGSPMTYSFKGKQYIGSM 525 (571)
T ss_dssp EEEEESS---CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE----CSSC-----CCSCCEEEEETTEEEEEEE
T ss_pred eEcCCCC---CCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEE----CCCC-----ceecceEEEECCEEEEEEE
Confidence 6654322 11111122356688889999999999999999998887 4444 2211244554333466554
Q ss_pred eC
Q 001248 1067 LS 1068 (1114)
Q Consensus 1067 ~~ 1068 (1114)
..
T Consensus 526 ~g 527 (571)
T d2ad6a1 526 YG 527 (571)
T ss_dssp EC
T ss_pred ec
Confidence 43
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.77 E-value=0.00093 Score=75.75 Aligned_cols=153 Identities=9% Similarity=0.061 Sum_probs=89.9
Q ss_pred cEEEEEeCCCcEEEEEcccceEEEeecccc-----------------------------------cCeeEEEEcCCCCEE
Q 001248 873 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHS-----------------------------------KRITGLAFSHALNVL 917 (1114)
Q Consensus 873 ~~la~g~~dg~v~iwd~~~~~~~~~l~~h~-----------------------------------~~V~~l~~s~d~~~l 917 (1114)
..++.++.+|.++++|..+|+.+....... ..-..++++|+...+
T Consensus 328 ~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~ 407 (573)
T d1kb0a2 328 KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLV 407 (573)
T ss_dssp EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEE
T ss_pred eeeeeccccceeEEeccccccccccccccccccccccccccceeeeeeccccccceEEeecccCCccccccccCCCcceE
Confidence 467888899999999999998775432110 001235678888888
Q ss_pred EEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCCceeeeeecCCCCcC
Q 001248 918 VSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAP 997 (1114)
Q Consensus 918 ~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~ 997 (1114)
+....+....++.....+...........+. ......+ +++.-.....-|.+.-||+.+++.+-...... +
T Consensus 408 yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~~~~-~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~---p 478 (573)
T d1kb0a2 408 YLPAQNVPVNLMDDKKWEFNQAGPGKPQSGT-----GWNTAKF-FNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS---P 478 (573)
T ss_dssp EEEEEECCCEEEECTTCCTTCCCTTSTTGGG-----TCCCCEE-ECSSCCCSCCEEEEEEEETTTTEEEEEEEESS---S
T ss_pred EeeccccceeeecccccccccCCCCcccccc-----ccccccc-cccCCCCCCCcccEEEeCCCCCceEeeecCCC---C
Confidence 8777777666666554322111000000000 0000000 01100000122568889999998876654321 2
Q ss_pred eeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeC
Q 001248 998 ITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 998 v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
...=..+-.|.++++|+.||.++.||..+|+.+-++.
T Consensus 479 ~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~ 515 (573)
T d1kb0a2 479 WNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP 515 (573)
T ss_dssp CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEE
Confidence 2222234478889999999999999999999998887
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.77 E-value=0.004 Score=70.01 Aligned_cols=149 Identities=11% Similarity=0.043 Sum_probs=92.2
Q ss_pred cEEEEEcccceEEEeecccccCeeE---------EEEcCCC---CEEEEEeCCCcEEEEeCCCCcccccccccc------
Q 001248 883 SIQIYNVRVDEVKSKLKGHSKRITG---------LAFSHAL---NVLVSSGADSQLCVWSSDGWEKQKNRFLQI------ 944 (1114)
Q Consensus 883 ~v~iwd~~~~~~~~~l~~h~~~V~~---------l~~s~d~---~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~------ 944 (1114)
.|.-.|+.+++.+..++.....+.. +....++ ..++.++.+|.+.++|-.+++.........
T Consensus 271 sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~ 350 (560)
T d1kv9a2 271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEK 350 (560)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEE
T ss_pred eeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccc
Confidence 5667788888887666543222221 1222233 357778899999999998887532111000
Q ss_pred -----------CC-----------CCCCCCCCceEEEEccCCcEEEE-EeC-----------------------------
Q 001248 945 -----------PT-----------GRTPTAQSDTRVQFHQDQIHFLV-VHE----------------------------- 972 (1114)
Q Consensus 945 -----------~~-----------~~~~~~~~i~~v~fspdg~~l~~-~~d----------------------------- 972 (1114)
.. ........-...+++|+..++.+ ..+
T Consensus 351 ~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (560)
T d1kv9a2 351 VDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATD 430 (560)
T ss_dssp ECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCC
T ss_pred cChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccC
Confidence 00 00000001135677888777776 221
Q ss_pred -------CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeC
Q 001248 973 -------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 973 -------~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
+.+.-||+.+++.+-......+ ..+-.++-.+.++++|+.||.++-+|..+|+.+-+++
T Consensus 431 ~p~~~~~G~l~A~D~~tGk~~W~~~~~~~---~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~ 496 (560)
T d1kv9a2 431 VPAAVVSGALLAWDPVKQKAAWKVPYPTH---WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE 496 (560)
T ss_dssp CCGGGCEEEEEEEETTTTEEEEEEEESSS---CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCCcccccceEEEeCCCCeEeeeccCCCC---CCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEE
Confidence 4678889999988877654332 2222234467788899999999999999999998887
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.75 E-value=0.016 Score=59.87 Aligned_cols=100 Identities=15% Similarity=0.179 Sum_probs=65.6
Q ss_pred ccEEEEeeCCCEEEEEe--CCeEEEEEcCCCcccc--------cc---CCCCCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 001248 821 VPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMA--------TF---MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY 887 (1114)
Q Consensus 821 v~~v~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~--------~~---~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iw 887 (1114)
...+.++|||+++++++ +.++.|+|++...... .+ ....-.-...+|+. .|+-..+-.-|.+|--|
T Consensus 277 PHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~-~g~aytslfids~v~kw 355 (459)
T d1fwxa2 277 PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDG-RGNAYTSLFLDSQVVKW 355 (459)
T ss_dssp CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECT-TSEEEEEETTTTEEEEE
T ss_pred CCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCC-CceEEEEeeccceEEEE
Confidence 45789999999999988 7999999986422111 11 11223456778988 77766677789999999
Q ss_pred Ecccc----------eEEEeeccccc-----CeeEEEEcCCCCEEEEEe
Q 001248 888 NVRVD----------EVKSKLKGHSK-----RITGLAFSHALNVLVSSG 921 (1114)
Q Consensus 888 d~~~~----------~~~~~l~~h~~-----~V~~l~~s~d~~~l~s~s 921 (1114)
++... ..+.++.-|-. ...+-...|||++|++..
T Consensus 356 ~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~n 404 (459)
T d1fwxa2 356 NIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS 404 (459)
T ss_dssp EHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred ecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEec
Confidence 98643 34444433322 111113468999999874
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.72 E-value=0.019 Score=64.68 Aligned_cols=59 Identities=15% Similarity=0.137 Sum_probs=44.9
Q ss_pred CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeC
Q 001248 973 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 973 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
|.+.-+|+.+++.+-+.... .++..-.++..|.++++|+.||.++-+|.+||+.+-+++
T Consensus 466 G~l~AiD~~TG~i~W~~~~~---~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~ 524 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEH---LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ 524 (582)
T ss_dssp EEEEEECTTTCCEEEEEEES---SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CeEEEEcCCCCcEEeecCCC---CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEE
Confidence 56888899999887766532 222222234577888899999999999999999998887
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.65 E-value=0.0013 Score=67.94 Aligned_cols=250 Identities=12% Similarity=0.081 Sum_probs=146.0
Q ss_pred eCCCEEEEEe--CCeEEEEEcCCCccccccCC-CCCCeEEEEEecC-CCcEEEEEeCC------------------CcEE
Q 001248 828 KNDSYVMSAS--GGKISLFNMMTFKTMATFMP-PPPAATFLAFHPQ-DNNIIAIGMDD------------------SSIQ 885 (1114)
Q Consensus 828 ~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~sp~-d~~~la~g~~d------------------g~v~ 885 (1114)
+||+|+.+.. +++|.+.|+.+.++.+.... ....+..+...++ .-.+++.++++ +.+.
T Consensus 97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t 176 (459)
T d1fwxa2 97 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 176 (459)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEE
T ss_pred cceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEE
Confidence 5999999998 68999999999887654322 2344666665441 34466665553 2367
Q ss_pred EEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCC---------------cEEEEeCCCCcc----------cccc
Q 001248 886 IYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS---------------QLCVWSSDGWEK----------QKNR 940 (1114)
Q Consensus 886 iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~---------------~v~iwd~~~~~~----------~~~~ 940 (1114)
++|..+.+....+.- .+....+++++||+++++.+.+. .+.+++....+. ....
T Consensus 177 ~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~ 255 (459)
T d1fwxa2 177 AVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 255 (459)
T ss_dssp EEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCce
Confidence 788888877766543 23466899999999999887542 133333211000 0000
Q ss_pred ccccCC--C-----CCCCCCCceEEEEccCCcEEEEE--eCCeEEEEEcCCCceee--------eeec-CCCCcCeeEEE
Q 001248 941 FLQIPT--G-----RTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLECVK--------QWVP-RESSAPITHAT 1002 (1114)
Q Consensus 941 ~~~~~~--~-----~~~~~~~i~~v~fspdg~~l~~~--~d~~i~iwd~~~~~~~~--------~~~~-~~h~~~v~~l~ 1002 (1114)
.+.... + ..+.......+.++|||++++++ -+.++.|+|+++..... .... ....-....-+
T Consensus 256 VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~ 335 (459)
T d1fwxa2 256 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTA 335 (459)
T ss_dssp EEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEE
T ss_pred eecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccc
Confidence 000000 0 00011234678999999999995 67899999987532210 0000 01244567789
Q ss_pred ECCCCCEEEEEEcCCeEEEEEcCCC----------eeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeC---C
Q 001248 1003 FSCDSQLVYACFLDATVCVFSAANL----------KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS---D 1069 (1114)
Q Consensus 1003 ~s~dg~~l~s~s~Dg~I~vwd~~~~----------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~---D 1069 (1114)
|+.+|.-..+-.-|..|.-|++... ..+.++..+....+.+. ++.-...| ||++|++... |
T Consensus 336 fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~-----~~g~t~~~-dgk~l~~~nk~skd 409 (459)
T d1fwxa2 336 FDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKT-----VMGETLDA-TNDWLVCLSKFSKD 409 (459)
T ss_dssp ECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEE-----TTTTSTTC-CSSEEEEEESCCTT
T ss_pred cCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCcc-----CcCCcCCC-CCCEEEEecccccc
Confidence 9888854445558999999998533 45556653322222111 11112335 6888888762 1
Q ss_pred ----------CcEEEEeccCCCCcc
Q 001248 1070 ----------GGVHVFEPLESEGKW 1084 (1114)
Q Consensus 1070 ----------g~v~vW~i~~~~~~~ 1084 (1114)
.+-.+.||+..+.++
T Consensus 410 rfl~vgpl~pe~~qlidisg~~m~l 434 (459)
T d1fwxa2 410 RFLNVGPLKPENDQLIDISGDKMVL 434 (459)
T ss_dssp SSCCCCSSCCEEEEEEECSSSSCEE
T ss_pred cccCCCCCCCccceEEEcCCCeeEE
Confidence 245678887666433
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.49 E-value=0.061 Score=53.25 Aligned_cols=234 Identities=11% Similarity=0.035 Sum_probs=127.6
Q ss_pred eEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEe-CCCeEEEEEcc
Q 001248 372 TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY-SRHIVQIYSYH 450 (1114)
Q Consensus 372 ~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-~dg~i~iwd~~ 450 (1114)
+||++- ...|+-.++.+..... +......+.+|+|.+.+++|.-.. .++.|.-.++.
T Consensus 3 fLl~s~--~~~I~~~~l~~~~~~~--------------------~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~ 60 (266)
T d1ijqa1 3 YLFFTN--RHEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLD 60 (266)
T ss_dssp EEEEEC--BSSEEEEETTSCCCEE--------------------EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-
T ss_pred EEEEEC--CCeEEEEECCCCccee--------------------eeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEec
Confidence 355543 3468888887654322 122344678999999888777664 45667666665
Q ss_pred CCceeee-eEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEE
Q 001248 451 GGDEVRQ-HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFST 529 (1114)
Q Consensus 451 ~~~~~~~-~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~ 529 (1114)
....... ...+......+..+++.+.++.+ ..+-...+.|.+.++........+.........+++++. .|.+.++.
T Consensus 61 ~~~~~~~~~~~~~~~~~~p~glAvD~~~~~l-Y~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~-~g~ly~~~ 138 (266)
T d1ijqa1 61 RAHGVSSYDTVISRDIQAPDGLAVDWIHSNI-YWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTD 138 (266)
T ss_dssp -------CEEEECSSCSCCCEEEEETTTTEE-EEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-TTEEEEEE
T ss_pred CCCCCcceEEEEeCCCCCcceEEEeeccceE-EEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcc-cCeEEEec
Confidence 3221111 11222333457789998777763 445566778999998766555555555566778887653 33344443
Q ss_pred e-cCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEE-eCCCeEEEEECCCcc
Q 001248 530 A-LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-GDDFSIKFWDMDSVQ 607 (1114)
Q Consensus 530 ~-~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~ 607 (1114)
. ..+.|...+++................. +++++.++.|+.+ ...+.|...++....
T Consensus 139 ~~~~~~I~r~~~dGs~~~~l~~~~~~~p~g---------------------l~iD~~~~~lYw~d~~~~~I~~~~~dG~~ 197 (266)
T d1ijqa1 139 WGTPAKIKKGGLNGVDIYSLVTENIQWPNG---------------------ITLDLLSGRLYWVDSKLHSISSIDVNGGN 197 (266)
T ss_dssp CSSSCEEEEEETTSCCEEEEECSSCSCEEE---------------------EEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred cCCCcceeEeccCCCceecccccccceeeE---------------------EEeeccccEEEEecCCcCEEEEEECCCCC
Confidence 2 2344555555433222222222223334 4444444445544 456788888886554
Q ss_pred eEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCc
Q 001248 608 LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI 651 (1114)
Q Consensus 608 ~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~ 651 (1114)
...............++++. ++.+..+-..++.|...+..++.
T Consensus 198 ~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~ 240 (266)
T d1ijqa1 198 RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS 240 (266)
T ss_dssp CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred EEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCCCc
Confidence 44333333222233456665 33444444567788888877763
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.44 E-value=0.033 Score=55.10 Aligned_cols=229 Identities=13% Similarity=0.065 Sum_probs=139.7
Q ss_pred CCEEEEEeCCeEEEEEcCCCcccc-----ccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccC
Q 001248 830 DSYVMSASGGKISLFNMMTFKTMA-----TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR 904 (1114)
Q Consensus 830 ~~~l~~~~dg~i~iwd~~~~~~~~-----~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~ 904 (1114)
|.+|+.+..+.|+-.+++...... .+..+...+.+++|.+.++.+..+-..++.|+..++..+.....+..-...
T Consensus 1 ~~fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~ 80 (263)
T d1npea_ 1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (263)
T ss_dssp CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred CCEEEEeCCCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEecccc
Confidence 456777777788888876443221 122233457789999834444444456678998888765544444433456
Q ss_pred eeEEEEcCCCCEEE-EEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEe--CCe--EEEEE
Q 001248 905 ITGLAFSHALNVLV-SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH--ETQ--LAIFE 979 (1114)
Q Consensus 905 V~~l~~s~d~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~--d~~--i~iwd 979 (1114)
+.++++..-+..|. +-...+.|.+.+++...... +. .... ..+..+++.|...+|..+. .+. |..-+
T Consensus 81 p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~---l~--~~~l---~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~ 152 (263)
T d1npea_ 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV---LF--DTGL---VNPRGIVTDPVRGNLYWTDWNRDNPKIETSH 152 (263)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE---EE--CSSC---SSEEEEEEETTTTEEEEEECCSSSCEEEEEE
T ss_pred ccEEEEeccCCeEEEeccCCCEEEEEecCCceEEE---Ee--cccc---cCCcEEEEecccCcEEEeecCCCCcEEEEec
Confidence 88999976566665 44556789999998744211 11 1111 2568999999887777642 223 44445
Q ss_pred cCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCC
Q 001248 980 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ 1058 (1114)
Q Consensus 980 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s-~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 1058 (1114)
+...... .+.. ..-..+..|++.+.++.|+.+. ..+.|...+++.......+. + ...|..++..
T Consensus 153 ~dG~~~~-~i~~-~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~-------~----~~~P~~lav~-- 217 (263)
T d1npea_ 153 MDGTNRR-ILAQ-DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE-------G----LQYPFAVTSY-- 217 (263)
T ss_dssp TTSCCCE-EEEC-TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE-------C----CCSEEEEEEE--
T ss_pred CCCCCce-eeee-ecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEEC-------C----CCCcEEEEEE--
Confidence 5443332 2221 2245678999998888886664 56789999987665443332 1 0124467665
Q ss_pred CCCeEEEEeCCCcEEEEeccCCC
Q 001248 1059 EPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1059 d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
++.+..+-...+.|...+..+++
T Consensus 218 ~~~lYwtd~~~~~I~~~~~~~g~ 240 (263)
T d1npea_ 218 GKNLYYTDWKTNSVIAMDLAISK 240 (263)
T ss_dssp TTEEEEEETTTTEEEEEETTTTE
T ss_pred CCEEEEEECCCCEEEEEECCCCc
Confidence 23444444467888888988877
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.38 E-value=0.022 Score=63.77 Aligned_cols=246 Identities=10% Similarity=0.068 Sum_probs=137.3
Q ss_pred CCCEEEEEeCCeEEEEEcCCCccccccCCCC----CCeEEEEEecCCCcEEEEEe------CCCcEEEEEcccceEEEee
Q 001248 829 NDSYVMSASGGKISLFNMMTFKTMATFMPPP----PAATFLAFHPQDNNIIAIGM------DDSSIQIYNVRVDEVKSKL 898 (1114)
Q Consensus 829 d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~----~~i~~l~~sp~d~~~la~g~------~dg~v~iwd~~~~~~~~~l 898 (1114)
+++.++...|+.+.-.|.++++......... ..++.--.-. ++.+ +++. .+|.|+-+|+.+|+.+.++
T Consensus 115 ~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~-~~~v-ivg~~~~~~~~~G~v~a~D~~TG~~~W~~ 192 (571)
T d2ad6a1 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KDTV-LMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEE-EEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEe-CCeE-EEeeccccccccCcEEEEECCCCcEEEEE
Confidence 4444444448999988999998765543211 1111111111 3434 3444 3678999999999988765
Q ss_pred cccc-------------------------------------cCe-eEEEEcCCCCEEEEEeCC----------------C
Q 001248 899 KGHS-------------------------------------KRI-TGLAFSHALNVLVSSGAD----------------S 924 (1114)
Q Consensus 899 ~~h~-------------------------------------~~V-~~l~~s~d~~~l~s~s~D----------------~ 924 (1114)
.... ..+ ...++.++..++..+..+ .
T Consensus 193 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~ 272 (571)
T d2ad6a1 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred eccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCcccccccccccccc
Confidence 3211 112 224555666665554442 3
Q ss_pred cEEEEeCCCCccccccccccCCCCC--CCCCCceEEEEccCCcE---EEE-EeCCeEEEEEcCCCceeeeeecCC-----
Q 001248 925 QLCVWSSDGWEKQKNRFLQIPTGRT--PTAQSDTRVQFHQDQIH---FLV-VHETQLAIFETTKLECVKQWVPRE----- 993 (1114)
Q Consensus 925 ~v~iwd~~~~~~~~~~~~~~~~~~~--~~~~~i~~v~fspdg~~---l~~-~~d~~i~iwd~~~~~~~~~~~~~~----- 993 (1114)
.+.-.|+++++..- .........- .............+|+. ++. +.+|.+.++|..+|+.+.......
T Consensus 273 svvAld~~TG~~~W-~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~ 351 (571)
T d2ad6a1 273 TIWGRDLDTGMAKW-GYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF 351 (571)
T ss_dssp EEEEEETTTCCEEE-EEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred ceeeeeccchhhee-cccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCccccc
Confidence 46666777766432 1111110000 00112233333445542 223 578999999999998764322110
Q ss_pred ------------------------------C-C-cCeeEEEECCCCCEEEEEEcC-------------------------
Q 001248 994 ------------------------------S-S-APITHATFSCDSQLVYACFLD------------------------- 1016 (1114)
Q Consensus 994 ------------------------------h-~-~~v~~l~~s~dg~~l~s~s~D------------------------- 1016 (1114)
. . ..-...+++|+..++++...+
T Consensus 352 ~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (571)
T d2ad6a1 352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM 431 (571)
T ss_dssp EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred ccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceee
Confidence 0 0 001235677877777654433
Q ss_pred ------------CeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCCCcc
Q 001248 1017 ------------ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKW 1084 (1114)
Q Consensus 1017 ------------g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~~~~ 1084 (1114)
|.|.-+|+.+|+.+-+.......-.+ + ++. .+.++++|+.||.++.+|..+||..|
T Consensus 432 ~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g-------~--l~T---agglVf~G~~dg~l~A~Da~tGe~lW 499 (571)
T d2ad6a1 432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGG-------T--LYT---KGGLVWYATLDGYLKALDNKDGKELW 499 (571)
T ss_dssp EECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSB-------C--EEE---TTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred ccccCCcccCCcccEEEeccCCCceeeEcCCCCCCCcc-------e--eEe---cCCEEEEECCCCeEEEEECCCCcEEE
Confidence 46778888999888766521111111 1 221 35788899999999999999999888
Q ss_pred cCCCC
Q 001248 1085 GVPPP 1089 (1114)
Q Consensus 1085 ~~~~~ 1089 (1114)
+..-|
T Consensus 500 ~~~l~ 504 (571)
T d2ad6a1 500 NFKMP 504 (571)
T ss_dssp EEECS
T ss_pred EEECC
Confidence 88544
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.34 E-value=0.057 Score=53.50 Aligned_cols=207 Identities=7% Similarity=-0.057 Sum_probs=128.8
Q ss_pred CCCccEEEEeeCCCEEEEEe--CCeEEEEEcCCCc----cccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc
Q 001248 818 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFK----TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 891 (1114)
Q Consensus 818 ~~~v~~v~~s~d~~~l~~~~--dg~i~iwd~~~~~----~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~ 891 (1114)
...+.+++|++..+.|.... .+.|.-.++.... ....+......+..+++.+..+++..+-...+.|.+.++..
T Consensus 29 ~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g 108 (266)
T d1ijqa1 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (266)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCC
Confidence 34567889998888887775 5677777664321 11122323345778999874566666656778999999887
Q ss_pred ceEEEeecccccCeeEEEEcCCCCEEEEEe--CCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE
Q 001248 892 DEVKSKLKGHSKRITGLAFSHALNVLVSSG--ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 969 (1114)
Q Consensus 892 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s--~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~ 969 (1114)
......+........++++.|...+|.-.. ..+.|.-.+++...... +.. .+. .....+++.+.++.|..
T Consensus 109 ~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~---l~~-~~~----~~p~gl~iD~~~~~lYw 180 (266)
T d1ijqa1 109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS---LVT-ENI----QWPNGITLDLLSGRLYW 180 (266)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE---EEC-SSC----SCEEEEEEETTTTEEEE
T ss_pred ceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceec---ccc-ccc----ceeeEEEeeccccEEEE
Confidence 655555555556788999998766666543 33456667776633211 111 111 24578999998877776
Q ss_pred E--eCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCCeeeEEeC
Q 001248 970 V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 970 ~--~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s-~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
+ ..+.|...++....+..............+|++. +.+|+.+. .++.|+..+..+++....+.
T Consensus 181 ~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~~~~~~ 246 (266)
T d1ijqa1 181 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (266)
T ss_dssp EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred ecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCCcceEEEE
Confidence 4 5678888898765543333322223456677775 44555443 66788888888877665544
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.33 E-value=0.032 Score=59.30 Aligned_cols=260 Identities=13% Similarity=0.078 Sum_probs=132.8
Q ss_pred cccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-C-CeEEEEEcCCCccccc--cCCCCCCeEEEEEecCCCc
Q 001248 798 QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-G-GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNN 873 (1114)
Q Consensus 798 ~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d-g~i~iwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~ 873 (1114)
.+||+.++...........+.......++.+||++++.|+ + ..+.+||..+..-... +... ..-.+++..+ |++
T Consensus 55 ~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~-r~~~~~~~~~-dG~ 132 (387)
T d1k3ia3 55 SSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVA-RGYQSSATMS-DGR 132 (387)
T ss_dssp EEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSC-CSSCEEEECT-TSC
T ss_pred EEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCccccccccccc-ccccceeeec-CCc
Confidence 3567766654332111112333445678889999999987 3 6799999987544322 2211 2234556667 889
Q ss_pred EEEEEeCC------CcEEEEEcccceEEE--eec-------cccc-----CeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001248 874 IIAIGMDD------SSIQIYNVRVDEVKS--KLK-------GHSK-----RITGLAFSHALNVLVSSGADSQLCVWSSDG 933 (1114)
Q Consensus 874 ~la~g~~d------g~v~iwd~~~~~~~~--~l~-------~h~~-----~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~ 933 (1114)
+++.|+.+ ..+.+||..+.+-.. ... .+.. .-..+...++|+.++.++.++.+.+++..+
T Consensus 133 v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~ 212 (387)
T d1k3ia3 133 VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGS 212 (387)
T ss_dssp EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTT
T ss_pred eeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCccc
Confidence 99988753 368999988764211 110 0110 111133345778888887777777777776
Q ss_pred CccccccccccCCCCCCCCCCceEEEE-ccCCcEEEEEe-C--------CeEEEEEcCCCcee-eeeec---CCCCcCee
Q 001248 934 WEKQKNRFLQIPTGRTPTAQSDTRVQF-HQDQIHFLVVH-E--------TQLAIFETTKLECV-KQWVP---RESSAPIT 999 (1114)
Q Consensus 934 ~~~~~~~~~~~~~~~~~~~~~i~~v~f-spdg~~l~~~~-d--------~~i~iwd~~~~~~~-~~~~~---~~h~~~v~ 999 (1114)
.....................-.++.+ ..+++.++.+. . ....+.+....... ..+.. -.+...-.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~ 292 (387)
T d1k3ia3 213 GDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFH 292 (387)
T ss_dssp CEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSC
T ss_pred CcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccc
Confidence 433221111111111110011123333 34667766632 1 12333333221111 11111 01122334
Q ss_pred EEEECCCCCEEEEEEcCC-----------eEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeC
Q 001248 1000 HATFSCDSQLVYACFLDA-----------TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS 1068 (1114)
Q Consensus 1000 ~l~~s~dg~~l~s~s~Dg-----------~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~ 1068 (1114)
+.+..+||++++.|+.+. .+.+||..+.+-.. +. ....+.. .+ . .....+ |+++++.|+.
T Consensus 293 ~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~-~~-~~~~~R~--~H---s-~a~l~~-dG~v~v~GG~ 363 (387)
T d1k3ia3 293 TSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYK-QN-PNSIVRV--YH---S-ISLLLP-DGRVFNGGGG 363 (387)
T ss_dssp EEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEE-CC-CCSSCCC--TT---E-EEEECT-TSCEEEEECC
T ss_pred eeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEE-CC-CCCCccc--ce---E-EEEECC-CCEEEEEeCC
Confidence 566678999999888531 47889988876432 22 1112211 11 0 122345 7899999884
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.29 E-value=0.058 Score=53.27 Aligned_cols=203 Identities=9% Similarity=-0.032 Sum_probs=131.2
Q ss_pred CCccEEEEeeCCCEEEEEe--CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEE
Q 001248 819 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 896 (1114)
Q Consensus 819 ~~v~~v~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~ 896 (1114)
..+.+++|....+.|.... ++.|+..++........+......+..+++....+++..+-...+.|.+.++.......
T Consensus 36 ~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~ 115 (263)
T d1npea_ 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV 115 (263)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEE
Confidence 3466788988888887765 58899999876555444444445789999987455555565667899999987654333
Q ss_pred eecccccCeeEEEEcCCCCEEEEEeCC-CcEEEE--eCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE--e
Q 001248 897 KLKGHSKRITGLAFSHALNVLVSSGAD-SQLCVW--SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--H 971 (1114)
Q Consensus 897 ~l~~h~~~V~~l~~s~d~~~l~s~s~D-~~v~iw--d~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~--~ 971 (1114)
.+........++++.|...+|.-.... +..+|| +++...... .. ..+ ......+++.+.++.|..+ .
T Consensus 116 l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~--i~--~~~----~~~P~glaiD~~~~~lYw~d~~ 187 (263)
T d1npea_ 116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI--LA--QDN----LGLPNGLTFDAFSSQLCWVDAG 187 (263)
T ss_dssp EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE--EE--CTT----CSCEEEEEEETTTTEEEEEETT
T ss_pred EecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCcee--ee--eec----ccccceEEEeecCcEEEEEeCC
Confidence 333344668899999987777654332 233444 555432211 11 111 1245789999888777664 5
Q ss_pred CCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCCeeeEEeC
Q 001248 972 ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 972 d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s-~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
.+.|...++........+. + .....+|++. +.+|+.+. ..+.|...|..+++.+..+.
T Consensus 188 ~~~I~~~~~~g~~~~~v~~--~-~~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~ 246 (263)
T d1npea_ 188 THRAECLNPAQPGRRKVLE--G-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (263)
T ss_dssp TTEEEEEETTEEEEEEEEE--C-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred CCEEEEEECCCCCeEEEEC--C-CCCcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEEC
Confidence 6789989987655433332 2 2235677774 55665554 56889999999998876654
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.26 E-value=0.035 Score=58.89 Aligned_cols=78 Identities=15% Similarity=0.199 Sum_probs=52.2
Q ss_pred CeeEEEEcCCCCeEEEEeCC-----C------eEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCC-C
Q 001248 422 SVNRVIWSPDGSLFGVAYSR-----H------IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-K 489 (1114)
Q Consensus 422 ~V~~l~~spdg~~las~~~d-----g------~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d-~ 489 (1114)
.+...+...||+.++.|+.+ + .+.+||..+++-.........|.......++.++|+ +++.|+.+ .
T Consensus 21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~--i~v~Gg~~~~ 98 (387)
T d1k3ia3 21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ--IVVTGGNDAK 98 (387)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC--EEEECSSSTT
T ss_pred ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCc--EEEeecCCCc
Confidence 44555566799999998843 1 377999998764322112223444455778999998 67777655 5
Q ss_pred CEEEEeCCCCcc
Q 001248 490 TIKVWDATNGAK 501 (1114)
Q Consensus 490 ~i~iwd~~~~~~ 501 (1114)
++.+||..+..-
T Consensus 99 ~~~~yd~~~~~w 110 (387)
T d1k3ia3 99 KTSLYDSSSDSW 110 (387)
T ss_dssp CEEEEEGGGTEE
T ss_pred ceeEecCccCcc
Confidence 799999877643
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.25 E-value=0.1 Score=50.68 Aligned_cols=241 Identities=10% Similarity=0.093 Sum_probs=145.7
Q ss_pred EEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCC
Q 001248 363 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH 442 (1114)
Q Consensus 363 ~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg 442 (1114)
+.-.+|..+ +||.-+ ..++.|+|+++.+++....+ ...|..-.|-.+. .|+..+ +.
T Consensus 67 sAIMhP~~~-IiALra-g~~LQiFnletK~klks~~~--------------------~e~VvfWkWis~~-~L~lVT-~t 122 (327)
T d1utca2 67 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLN-TVALVT-DN 122 (327)
T ss_dssp EEEECSSSS-EEEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCCCEEEESSSS-EEEEEC-SS
T ss_pred hhhcCCCCc-EEEEec-CCeEEEEehhHhhhhceEEc--------------------CCCcEEEEecCCC-EEEEEc-CC
Confidence 445678887 566654 56899999999988875322 2367778887544 455553 45
Q ss_pred eEEEEEccCCceeeeeEeecccc----CCeeEEEecCCCCeeEEEEe--c----CCCCEEEEeCCCCcceeEeeccccCE
Q 001248 443 IVQIYSYHGGDEVRQHLEIDAHV----GGVNDIAFSHPNKQLCVITC--G----DDKTIKVWDATNGAKQYIFEGHEAPV 512 (1114)
Q Consensus 443 ~i~iwd~~~~~~~~~~~~l~~h~----~~V~~v~~s~d~~~~~l~s~--~----~d~~i~iwd~~~~~~~~~~~~h~~~v 512 (1114)
.|.=|+++..... ...+..|. ..|..-..+++.+++ +++| . -.|.+.+|..+.+ .-+.+.||....
T Consensus 123 aVYHW~~~g~s~P--~k~fdR~~~L~~~QIInY~~d~~~kW~-~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F 198 (327)
T d1utca2 123 AVYHWSMEGESQP--VKMFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASF 198 (327)
T ss_dssp EEEEEESSSSCCC--EEEEECCGGGTTCEEEEEEECTTSCEE-EEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEE
T ss_pred ceEEEcccCCCCc--hhhhhhcccccCceEEEEEECCCCCEE-EEEeEecCCCceeEEEEEEEeccC-cCccccceeeee
Confidence 6999999654322 22344443 367777888999973 3333 1 2367889996644 457788888777
Q ss_pred EEEeeccCCCceEEEE-Ee---cCCeEEEEEcCCCCC-eeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCC
Q 001248 513 YSVCPHHKENIQFIFS-TA---LDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 587 (1114)
Q Consensus 513 ~~~~~~~~~~~~~l~s-~~---~d~~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~ 587 (1114)
..+.+...+....+++ +. ..+.+++-++..... ... -......+.|.|+.. +.-...+.+++.-.
T Consensus 199 ~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~---f~kk~vdi~fppea~-------~DFPvamqvs~kyg 268 (327)
T d1utca2 199 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQP---FPKKAVDVFFPPEAQ-------NDFPVAMQISEKHD 268 (327)
T ss_dssp EEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCC---CCCEEEECCCCTTCT-------TCCEEEEEEETTTT
T ss_pred EEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCC---CcceeEEEECCcccc-------CCcEEEEEeeccCC
Confidence 6665433332222332 22 235788887765221 111 112233445555433 12334566777777
Q ss_pred EEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEE
Q 001248 588 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIK 643 (1114)
Q Consensus 588 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~ 643 (1114)
.++..+.-|.|++||+.++.++..-..... .|...+-..+..-+++...+|.|.
T Consensus 269 iiyviTK~G~i~lyDleTgt~i~~nRIs~~--~iF~~a~~~~~~Gi~~VNr~GqVl 322 (327)
T d1utca2 269 VVFLITKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPHEATAGIIGVNRKGQVL 322 (327)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEETTTTEEEEEETTSEEE
T ss_pred EEEEEecCcEEEEEEcccccEEEEeecCCC--ceEEeccCCCCceEEEECCCCeEE
Confidence 899999999999999999999887664432 344333344434444445666654
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.25 E-value=0.1 Score=50.67 Aligned_cols=89 Identities=12% Similarity=0.116 Sum_probs=59.2
Q ss_pred CCeEEEEEcCCCcc-ccc-------c--C--CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCe
Q 001248 838 GGKISLFNMMTFKT-MAT-------F--M--PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI 905 (1114)
Q Consensus 838 dg~i~iwd~~~~~~-~~~-------~--~--~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V 905 (1114)
.++++|.++.+... -.. + + ....-..++..|+ .-.++..-+.-|.|++||++++.++..-+-..+.|
T Consensus 222 ~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~-kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~i 300 (327)
T d1utca2 222 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETI 300 (327)
T ss_dssp EEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred CcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeec-cCCEEEEEecCcEEEEEEcccccEEEEeecCCCce
Confidence 37899999865321 111 1 1 1123457888888 66688888999999999999999887766666666
Q ss_pred eEEEEcCCCCEEEEEeCCCcEE
Q 001248 906 TGLAFSHALNVLVSSGADSQLC 927 (1114)
Q Consensus 906 ~~l~~s~d~~~l~s~s~D~~v~ 927 (1114)
..-+-..+..=++....+|.|.
T Consensus 301 F~~a~~~~~~Gi~~VNr~GqVl 322 (327)
T d1utca2 301 FVTAPHEATAGIIGVNRKGQVL 322 (327)
T ss_dssp EEEEEETTTTEEEEEETTSEEE
T ss_pred EEeccCCCCceEEEECCCCeEE
Confidence 6555554444455555666554
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.24 E-value=0.079 Score=56.95 Aligned_cols=113 Identities=12% Similarity=0.067 Sum_probs=69.4
Q ss_pred ceEEEEcCCCCeEEEEEecCC----cEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 361 PMSMDFHPVQQTLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 361 v~~v~~spdg~~ll~tg~~dg----~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
+...++||||++++++-+.+| .|++.|+.+|+.+.. .+ . ......++|++|++.|.
T Consensus 127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~-~i-----------------~--~~~~~~~~W~~D~~~~~ 186 (430)
T d1qfma1 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-VL-----------------E--RVKFSCMAWTHDGKGMF 186 (430)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-EE-----------------E--EECSCCEEECTTSSEEE
T ss_pred ecceEecCCCCEEEEEeccccCchheeEEeccCcceeccc-cc-----------------c--cccccceEEcCCCCEEE
Confidence 446688999998776665555 599999999987642 11 1 01224689999999887
Q ss_pred EEeCC----------------CeEEEEEccCCceeeeeEeecccc--CCeeEEEecCCCCeeEEEEec-CCCCEEEE
Q 001248 437 VAYSR----------------HIVQIYSYHGGDEVRQHLEIDAHV--GGVNDIAFSHPNKQLCVITCG-DDKTIKVW 494 (1114)
Q Consensus 437 s~~~d----------------g~i~iwd~~~~~~~~~~~~l~~h~--~~V~~v~~s~d~~~~~l~s~~-~d~~i~iw 494 (1114)
....+ ..|..|.+.+...-. ...+.... ..+..+..+.+++++++.+.. .+....+|
T Consensus 187 Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d-~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~ 262 (430)
T d1qfma1 187 YNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED-ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLW 262 (430)
T ss_dssp EEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC-EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEE
T ss_pred EEEeccccCcccccccccCCcceEEEEECCCCcccc-ccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEE
Confidence 65432 257777777653221 11233333 346678889999963333332 33344444
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.08 E-value=0.059 Score=60.43 Aligned_cols=170 Identities=14% Similarity=0.054 Sum_probs=90.6
Q ss_pred EEEEecCCCCEEEEeCCCCcceeEeeccccCE-EEEeeccCCCceEEEEEec------CCeEEEEEcCCCCCeeeecCCC
Q 001248 481 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPV-YSVCPHHKENIQFIFSTAL------DGKIKAWLYDNLGSRVDYEAPG 553 (1114)
Q Consensus 481 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v-~~~~~~~~~~~~~l~s~~~------d~~i~~wd~~~~~~~~~~~~~~ 553 (1114)
.++.++.|+.|.-.|.++|+.+..+....... ..+.-.+.--+..++.+.. .|.|+-+|..+++.+..+....
T Consensus 123 ~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~ 202 (596)
T d1w6sa_ 123 LILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATG 202 (596)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSS
T ss_pred EEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeeccC
Confidence 57788889999999999999988764211000 0011001101134555543 4889999999998887654321
Q ss_pred CeeEEEE------------------EecCCCeEEeeecccceeEEEecCCCCEEEEEeC----------------CCeEE
Q 001248 554 RWCTTMA------------------YSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD----------------DFSIK 599 (1114)
Q Consensus 554 ~~v~~~~------------------~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------------dg~i~ 599 (1114)
..-.... -...+... .......-...++++..+.++.+.. ...|.
T Consensus 203 ~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~-~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~siv 281 (596)
T d1w6sa_ 203 PDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAW-KIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF 281 (596)
T ss_dssp CHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGG-GGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred CccccccccccccccccccccccccccCCCCce-ecCCCccccccccccCCCeeeccccccccccccccccccccccccc
Confidence 1000000 00000000 0000001122344555555555432 34577
Q ss_pred EEECCCcceEEEeccCCCCCC----c--CeE-E-EcCCC---CEEEEEeCCCcEEEEEccCCc
Q 001248 600 FWDMDSVQLLTSIDADGGLPA----S--PRI-R-FNKDG---CLLAVSTNDNGIKILATSDGI 651 (1114)
Q Consensus 600 iwd~~~~~~~~~~~~~~~~~~----v--~~~-~-~s~d~---~~l~~~~~dg~i~iwd~~~~~ 651 (1114)
..|+.+|+.+..+....+... . ..+ . ...+| +.++....+|.+.++|..+++
T Consensus 282 AlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~ 344 (596)
T d1w6sa_ 282 GRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA 344 (596)
T ss_dssp EEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred ccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCc
Confidence 889999998887754332111 1 111 1 12344 367788899999999999994
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.06 E-value=0.054 Score=60.40 Aligned_cols=242 Identities=13% Similarity=0.160 Sum_probs=136.5
Q ss_pred EEEEEe-CCeEEEEEcCCCccccccCCCCC----CeE-EEEEecCCCcEEEEEeC------CCcEEEEEcccceEEEeec
Q 001248 832 YVMSAS-GGKISLFNMMTFKTMATFMPPPP----AAT-FLAFHPQDNNIIAIGMD------DSSIQIYNVRVDEVKSKLK 899 (1114)
Q Consensus 832 ~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~----~i~-~l~~sp~d~~~la~g~~------dg~v~iwd~~~~~~~~~l~ 899 (1114)
.++.+. ++.|.-.|..+++.+........ .++ .-.+. ++ .++++.. .|.|+-+|..+|+.+.++.
T Consensus 119 ~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~--~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~ 195 (560)
T d1kv9a2 119 KVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV--KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (560)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE--TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred eEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeee--cC-cccccccceeccccceEEEEECCCceEEeeee
Confidence 444444 88888889988888766542211 111 11111 23 3334432 3679999999999887763
Q ss_pred cc------------------------------ccCe-eEEEEcCCCCEEEEEeC-------------------CCcEEEE
Q 001248 900 GH------------------------------SKRI-TGLAFSHALNVLVSSGA-------------------DSQLCVW 929 (1114)
Q Consensus 900 ~h------------------------------~~~V-~~l~~s~d~~~l~s~s~-------------------D~~v~iw 929 (1114)
.- ...+ ..+++.+...++..+.. ...|.-.
T Consensus 196 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAl 275 (560)
T d1kv9a2 196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI 275 (560)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred eccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEe
Confidence 10 1112 22455566665554321 1245666
Q ss_pred eCCCCccccccccccCCCCCC--CCCCceEEEEccCCc---EEEE-EeCCeEEEEEcCCCceeeeeecCC----------
Q 001248 930 SSDGWEKQKNRFLQIPTGRTP--TAQSDTRVQFHQDQI---HFLV-VHETQLAIFETTKLECVKQWVPRE---------- 993 (1114)
Q Consensus 930 d~~~~~~~~~~~~~~~~~~~~--~~~~i~~v~fspdg~---~l~~-~~d~~i~iwd~~~~~~~~~~~~~~---------- 993 (1114)
|+++++..-.. ......... ......-+.+..+|+ .++. ..+|.+.++|..+++.+.......
T Consensus 276 d~~tG~~~W~~-Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~ 354 (560)
T d1kv9a2 276 RPDTGKLAWHY-QVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLA 354 (560)
T ss_dssp CTTTCCEEEEE-ESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTT
T ss_pred cCCccceeEEE-eccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChh
Confidence 77776543211 111111000 001112223333443 3333 578899999999998875432110
Q ss_pred -----------------------C-CcCeeEEEECCCCCEEEEEEcC---------------------------------
Q 001248 994 -----------------------S-SAPITHATFSCDSQLVYACFLD--------------------------------- 1016 (1114)
Q Consensus 994 -----------------------h-~~~v~~l~~s~dg~~l~s~s~D--------------------------------- 1016 (1114)
. ...-...+++|+..+++....+
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 434 (560)
T d1kv9a2 355 TGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAA 434 (560)
T ss_dssp TCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGG
T ss_pred hccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCc
Confidence 0 0011245677787777654422
Q ss_pred ---CeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCCCcccCCCC
Q 001248 1017 ---ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPP 1089 (1114)
Q Consensus 1017 ---g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~~~~~~~~~ 1089 (1114)
|.|.-||+.+|+.+-+.........+ .++- .+.++++|+.||.++.+|..+||..|+..-|
T Consensus 435 ~~~G~l~A~D~~tGk~~W~~~~~~~~~gg---------~l~T---agglVF~G~~dg~l~A~Da~tGe~LW~~~l~ 498 (560)
T d1kv9a2 435 VVSGALLAWDPVKQKAAWKVPYPTHWNGG---------TLST---AGNLVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (560)
T ss_dssp GCEEEEEEEETTTTEEEEEEEESSSCCCC---------EEEE---TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred ccccceEEEeCCCCeEeeeccCCCCCCCc---------eeEE---CCCEEEEECCCCcEEEEECCCCcEeEEEECC
Confidence 56888999999999877622222111 2222 3678899999999999999999999988665
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.02 E-value=0.053 Score=60.69 Aligned_cols=61 Identities=15% Similarity=0.280 Sum_probs=44.7
Q ss_pred CeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCCCcccCCCC
Q 001248 1017 ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPP 1089 (1114)
Q Consensus 1017 g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~~~~~~~~~ 1089 (1114)
|.+.-||+.+|+.+-+.+.......+ .++. .+.++++|+.||.++.+|..+||..|+..-|
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~p~~gg---------~lst---agglVF~G~~dg~l~A~Da~TGe~LW~~~~~ 517 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVSPWNGG---------TLTT---AGNVVFQGTADGRLVAYHAATGEKLWEAPTG 517 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCC---------EEEE---TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred ccEEEeCCCCCceEeeecCCCCCCCc---------eEEE---cCCEEEEECCCCeEEEEECCCCcEeEEEECC
Confidence 35777899999988876622211111 2222 4678999999999999999999999988655
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.75 E-value=0.18 Score=54.06 Aligned_cols=245 Identities=14% Similarity=0.117 Sum_probs=129.7
Q ss_pred CCccEEEEeeCCCEEEEEe--CC----eEEEEEcCCCccccc-cCCCCCCeEEEEEecCCCcEEEEEeCC----------
Q 001248 819 EAVPCFALSKNDSYVMSAS--GG----KISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDD---------- 881 (1114)
Q Consensus 819 ~~v~~v~~s~d~~~l~~~~--dg----~i~iwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~la~g~~d---------- 881 (1114)
-.+..+++|||+++++.+- +| .|+++|+.+++.+.. +. ......++|++ |++.|+....+
T Consensus 125 ~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~--~~~~~~~~W~~-D~~~~~Y~~~~~~~~~~~~~~ 201 (430)
T d1qfma1 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE--RVKFSCMAWTH-DGKGMFYNAYPQQDGKSDGTE 201 (430)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE--EECSCCEEECT-TSSEEEEEECCCCSSCCSSSC
T ss_pred ceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc--cccccceEEcC-CCCEEEEEEeccccCcccccc
Confidence 3345678899999999664 33 499999999886532 21 11225688999 66666543322
Q ss_pred ------CcEEEEEcccce--EEEeecc--cccCeeEEEEcCCCCEEEEEeC---CCcEEEE--eCCCCccccc---cccc
Q 001248 882 ------SSIQIYNVRVDE--VKSKLKG--HSKRITGLAFSHALNVLVSSGA---DSQLCVW--SSDGWEKQKN---RFLQ 943 (1114)
Q Consensus 882 ------g~v~iwd~~~~~--~~~~l~~--h~~~V~~l~~s~d~~~l~s~s~---D~~v~iw--d~~~~~~~~~---~~~~ 943 (1114)
..|+.+.+.+.. ....+.. ....+..+..+.|+++++.... +....+| ++........ ....
T Consensus 202 ~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 281 (430)
T d1qfma1 202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK 281 (430)
T ss_dssp CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred cccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeE
Confidence 257888776642 1222232 3334667788999999764332 3344555 4332111000 0001
Q ss_pred cCCCCCCCCCCceEEEEccCCcEEEEE----eCCeEEEEEcCCCcee--eeeecCCCCcCeeEEEECCCCCEEEEE-EcC
Q 001248 944 IPTGRTPTAQSDTRVQFHQDQIHFLVV----HETQLAIFETTKLECV--KQWVPRESSAPITHATFSCDSQLVYAC-FLD 1016 (1114)
Q Consensus 944 ~~~~~~~~~~~i~~v~fspdg~~l~~~----~d~~i~iwd~~~~~~~--~~~~~~~h~~~v~~l~~s~dg~~l~s~-s~D 1016 (1114)
..... ..........++.+++.+ .++.|...++...... ..+. ..+...+..-.++..+.+|+.. ..+
T Consensus 282 ~~~~~----~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi-~~~~~~~~~~~~~~~~~~lvl~~~~~ 356 (430)
T d1qfma1 282 LIDNF----EGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV-PEHEKDVLEWVACVRSNFLVLCYLHD 356 (430)
T ss_dssp EECSS----SSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEE-CCCSSCEEEEEEEETTTEEEEEEEET
T ss_pred eeccc----ccceEEEecCCceeecccCcccccceeEEecCCCCccccceEEe-cccCcceeeeEEEEECCEEEEEEEcC
Confidence 11110 011222333334444433 3456777777654321 2222 2344445544455555566544 455
Q ss_pred C--eEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeC---CCcEEEEeccCCC
Q 001248 1017 A--TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS---DGGVHVFEPLESE 1081 (1114)
Q Consensus 1017 g--~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~---Dg~v~vW~i~~~~ 1081 (1114)
+ .|++++..+++...... .+.+ .+. .+...+.+..+.++-++ =.+++-+|+.+++
T Consensus 357 ~~~~l~v~~~~~~~~~~~~~----~~~~----sv~--~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~ 416 (430)
T d1qfma1 357 VKNTLQLHDLATGALLKIFP----LEVG----SVV--GYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (430)
T ss_dssp TEEEEEEEETTTCCEEEEEC----CCSS----EEE--EEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CEeEEEEEECCCCcEEEecC----CCCc----eEe--eccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence 4 48999999888765433 2222 122 33334433334433321 2789999999987
|
| >d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.74 E-value=0.00067 Score=50.41 Aligned_cols=56 Identities=16% Similarity=0.253 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCcc--HHHHHHHhhccCHHHHHHHhccC
Q 001248 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN--MKYFEDEVHNGNWDDVEKYLSGF 60 (1114)
Q Consensus 5 ~~~v~~li~q~L~~~g~~~s~~~l~~Esg~~~~--~~~~~~~i~~g~w~~~~~~~~~~ 60 (1114)
++|+.+=|++||..+||.+++.+|.+|.++.++ ...-...+++-+|..++++=.++
T Consensus 7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~~~~~~~ky~glLEKKWtSViRLQkKI 64 (76)
T d1uuja_ 7 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKV 64 (76)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCcHHHHHHHHHHHCCCCChhhhhhhcCcchhHHHHHHHHHHHH
Confidence 578999999999999999999999999998875 55666778888887776665543
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.23 E-value=1.3 Score=49.03 Aligned_cols=81 Identities=11% Similarity=0.096 Sum_probs=53.2
Q ss_pred CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccC-eeEEEEcCCCC-
Q 001248 838 GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFSHALN- 915 (1114)
Q Consensus 838 dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~s~d~~- 915 (1114)
.|.|.-+|+.+++.......+.. +..-.++- .+.++++|+.||.++-+|.++|+.+.+++-.... -.-+.|..||+
T Consensus 465 ~G~l~AiD~~TG~i~W~~~~~~p-~~~g~lst-agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~q 542 (582)
T d1flga_ 465 VGSLRAMDPVSGKVVWEHKEHLP-LWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ 542 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSC-CCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CCeEEEEcCCCCcEEeecCCCCC-CccceeEE-cCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence 36788888888887766543221 22111233 5668888999999999999999999887642221 12267777885
Q ss_pred EEEEE
Q 001248 916 VLVSS 920 (1114)
Q Consensus 916 ~l~s~ 920 (1114)
+++..
T Consensus 543 Yv~i~ 547 (582)
T d1flga_ 543 YLGVT 547 (582)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 45443
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=95.31 E-value=1.4 Score=44.53 Aligned_cols=172 Identities=13% Similarity=0.112 Sum_probs=92.2
Q ss_pred CceEEEEcCCCCeEEEEEec-----------CCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEE
Q 001248 360 SPMSMDFHPVQQTLLLVGTN-----------VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 428 (1114)
Q Consensus 360 ~v~~v~~spdg~~ll~tg~~-----------dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 428 (1114)
.--.++..|||..++++|-. .|.|.++|+.+.+.... .+.+- ........+..| .+. +.-
T Consensus 36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~-~l~~~-----~~~~~~~~f~Ph--Gi~-l~~ 106 (340)
T d1v04a_ 36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVS-ELEII-----GNTLDISSFNPH--GIS-TFI 106 (340)
T ss_dssp CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEE-ECEEE-----CSSSCGGGCCEE--EEE-EEE
T ss_pred CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcce-EEEec-----CCCCCCcceecc--cee-EEE
Confidence 34468889999876666421 37888888876543321 11100 000000012223 221 222
Q ss_pred cCCCCe-EEEEe---CCCeEEEEEccCCc-eeeeeEeec-cccCCeeEEEecCCCCeeEEEEec--C-------------
Q 001248 429 SPDGSL-FGVAY---SRHIVQIYSYHGGD-EVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCG--D------------- 487 (1114)
Q Consensus 429 spdg~~-las~~---~dg~i~iwd~~~~~-~~~~~~~l~-~h~~~V~~v~~s~d~~~~~l~s~~--~------------- 487 (1114)
.+||++ |++.. ...+|.+|++..+. .+.-..++. ......+++++..++. +++|-. .
T Consensus 107 ~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~--fy~Tnd~~~~~~~~~~~e~~~~ 184 (340)
T d1v04a_ 107 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH--FYATNDHYFIDPYLKSWEMHLG 184 (340)
T ss_dssp CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE--EEEEESCSCCSHHHHHHHHHTT
T ss_pred cCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCC--EEEecCccCcChhhhhhhHhhc
Confidence 456763 44442 45679999886443 232222222 2234578999999998 667721 1
Q ss_pred CCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCC
Q 001248 488 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG 544 (1114)
Q Consensus 488 d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 544 (1114)
-++..+|....++. ......-...+.++++++.+ .++++-+..+.|+.|++....
T Consensus 185 ~~~g~v~~~~~~~~-~~~~~~l~~pNGI~~s~d~~-~lyVa~t~~~~i~~y~~~~~~ 239 (340)
T d1v04a_ 185 LAWSFVTYYSPNDV-RVVAEGFDFANGINISPDGK-YVYIAELLAHKIHVYEKHANW 239 (340)
T ss_dssp CCCEEEEEECSSCE-EEEEEEESSEEEEEECTTSS-EEEEEEGGGTEEEEEEECTTS
T ss_pred CCceeEEEEcCCce-EEEcCCCCccceeEECCCCC-EEEEEeCCCCeEEEEEeCCCc
Confidence 12344554444443 33333345678888765442 355566678899999987544
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=94.29 E-value=1.1 Score=45.11 Aligned_cols=198 Identities=11% Similarity=0.146 Sum_probs=110.1
Q ss_pred CCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEc------CCCCEEEEEeC-C---CcEEEEeCCCCcccccc
Q 001248 871 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS------HALNVLVSSGA-D---SQLCVWSSDGWEKQKNR 940 (1114)
Q Consensus 871 d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s------~d~~~l~s~s~-D---~~v~iwd~~~~~~~~~~ 940 (1114)
+..+++....++-|++||+. |+.+..+. .++++.|..- ....-|+.++. + .+|.+|.+........
T Consensus 39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~- 114 (353)
T d1h6la_ 39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ- 114 (353)
T ss_dssp GGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE-
T ss_pred CccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc-
Confidence 34566666667779999985 77777664 3556665543 22223555552 2 3588888864221110
Q ss_pred ccccCCC-CCCCCCCceEEEE--ccC-CcEEEE--EeCCeEEEEEcC---CC----ceeeeeecCCCCcCeeEEEECCCC
Q 001248 941 FLQIPTG-RTPTAQSDTRVQF--HQD-QIHFLV--VHETQLAIFETT---KL----ECVKQWVPRESSAPITHATFSCDS 1007 (1114)
Q Consensus 941 ~~~~~~~-~~~~~~~i~~v~f--spd-g~~l~~--~~d~~i~iwd~~---~~----~~~~~~~~~~h~~~v~~l~~s~dg 1007 (1114)
.+..... .......+..+|+ ++. |.+.+. ..+|.+..|.+. .+ +.++.+.. ...+..+.+....
T Consensus 115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~---~~q~EGCVvDde~ 191 (353)
T d1h6la_ 115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM---NSQTEGMAADDEY 191 (353)
T ss_dssp ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC---SSCEEEEEEETTT
T ss_pred cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC---CCccceEEEeCCC
Confidence 0111100 0011124667777 554 544333 467888887653 22 34555543 4578899999999
Q ss_pred CEEEEEEcCCeEEEEEcC-----CCeeeEEeCCCcccCCCCCCCCccceEEEecCC-CCCeEEEEeCCCcEEEEeccCCC
Q 001248 1008 QLVYACFLDATVCVFSAA-----NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ-EPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1008 ~~l~s~s~Dg~I~vwd~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
..|+.+-++.-|+.++++ .+.++..... ..+ ..-+.-+++-..++ +|.+|+|.-.|++..|++..+..
T Consensus 192 ~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g-~~l-----~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~ 265 (353)
T d1h6la_ 192 GSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG-RHL-----TPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQN 265 (353)
T ss_dssp TEEEEEETTTEEEEEESSTTSCSCCEEEEECSS-SSC-----CSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTC
T ss_pred CcEEEecCccceEEEEeccCCCccceeeecccC-ccc-----cCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCc
Confidence 999999888777666653 2233322221 111 11234344444432 34456666678899999987753
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=94.22 E-value=3.2 Score=41.65 Aligned_cols=199 Identities=9% Similarity=0.140 Sum_probs=111.4
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEec----C-CCcEEEEEe--CCC--cEEEEEccc-ceEEEe
Q 001248 829 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHP----Q-DNNIIAIGM--DDS--SIQIYNVRV-DEVKSK 897 (1114)
Q Consensus 829 d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp----~-d~~~la~g~--~dg--~v~iwd~~~-~~~~~~ 897 (1114)
+..+++... .+.|.+||+. |+.+..+. .+.+..+..-. . ...-+++++ .++ +|.+|.+.. ...+..
T Consensus 39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~ 115 (353)
T d1h6la_ 39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (353)
T ss_dssp GGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred CccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence 444555554 5569999995 67776664 34555554331 0 222344454 223 577887753 223333
Q ss_pred eccc-------ccCeeEEEE--cCC-CC-EEEEEeCCCcEEEEeCCCCcc--ccccccccCCCCCCCCCCceEEEEccCC
Q 001248 898 LKGH-------SKRITGLAF--SHA-LN-VLVSSGADSQLCVWSSDGWEK--QKNRFLQIPTGRTPTAQSDTRVQFHQDQ 964 (1114)
Q Consensus 898 l~~h-------~~~V~~l~~--s~d-~~-~l~s~s~D~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~i~~v~fspdg 964 (1114)
+... ...+.++|+ ++. |. +++....+|.+..|.+..... .....++.+.. ...+..|++..+.
T Consensus 116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~----~~q~EGCVvDde~ 191 (353)
T d1h6la_ 116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM----NSQTEGMAADDEY 191 (353)
T ss_dssp CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC----SSCEEEEEEETTT
T ss_pred ccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC----CCccceEEEeCCC
Confidence 3321 134778888 554 44 466777889999888743221 11222222221 1367899999998
Q ss_pred cEEEEEe-CCeEEEEEcCC--C---ceeeeeecCCCCcCeeEEEEC--CCCC-EEEEEE-cCCeEEEEEcCC-CeeeEEe
Q 001248 965 IHFLVVH-ETQLAIFETTK--L---ECVKQWVPRESSAPITHATFS--CDSQ-LVYACF-LDATVCVFSAAN-LKLRCRI 1033 (1114)
Q Consensus 965 ~~l~~~~-d~~i~iwd~~~--~---~~~~~~~~~~h~~~v~~l~~s--~dg~-~l~s~s-~Dg~I~vwd~~~-~~~~~~~ 1033 (1114)
..|.++. +..+..++..- . ..+...........+..|+.- .++. ||++.+ .+.+..|||..+ .+.+..+
T Consensus 192 ~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F 271 (353)
T d1h6la_ 192 GSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADF 271 (353)
T ss_dssp TEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred CcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceE
Confidence 8888874 44555555431 1 122111111235677777753 3444 655444 578899999876 4677666
Q ss_pred C
Q 001248 1034 N 1034 (1114)
Q Consensus 1034 ~ 1034 (1114)
.
T Consensus 272 ~ 272 (353)
T d1h6la_ 272 Q 272 (353)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=93.47 E-value=2.1 Score=43.25 Aligned_cols=185 Identities=6% Similarity=0.041 Sum_probs=102.9
Q ss_pred CccEEEEeeCCCEEEEEe-------------CCeEEEEEcCCCcccc-cc--CCC-----CCCeEEEEE--ecCCCc-EE
Q 001248 820 AVPCFALSKNDSYVMSAS-------------GGKISLFNMMTFKTMA-TF--MPP-----PPAATFLAF--HPQDNN-II 875 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~~~~-------------dg~i~iwd~~~~~~~~-~~--~~~-----~~~i~~l~~--sp~d~~-~l 875 (1114)
....+++.|||..+++++ .|.|.++|+.+..... .+ .+. .-....+.+ .+ ++. +|
T Consensus 36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~-dg~~~L 114 (340)
T d1v04a_ 36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDD-DNTVYL 114 (340)
T ss_dssp CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECT-TCCEEE
T ss_pred CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcC-CCcEEE
Confidence 455788889998777653 2789999987654321 11 111 012233433 33 343 44
Q ss_pred EEEe---CCCcEEEEEcccc--eE--EEeecc-cccCeeEEEEcCCCCEEEEEeC---------------CCcEEEEeCC
Q 001248 876 AIGM---DDSSIQIYNVRVD--EV--KSKLKG-HSKRITGLAFSHALNVLVSSGA---------------DSQLCVWSSD 932 (1114)
Q Consensus 876 a~g~---~dg~v~iwd~~~~--~~--~~~l~~-h~~~V~~l~~s~d~~~l~s~s~---------------D~~v~iwd~~ 932 (1114)
++.. ...+|.+|++... +. +..+.. .....++|++..++.+++|-.. -++..+|..+
T Consensus 115 ~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~ 194 (340)
T d1v04a_ 115 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 194 (340)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEc
Confidence 4442 3567888887643 22 122222 2245789999999998888421 1234455544
Q ss_pred CCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE--eCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEE
Q 001248 933 GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLV 1010 (1114)
Q Consensus 933 ~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 1010 (1114)
.++.. ...... .....++++||+++|+++ ..++|++|++.............-...+-.+.+.+++..+
T Consensus 195 ~~~~~--~~~~~l-------~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~l 265 (340)
T d1v04a_ 195 PNDVR--VVAEGF-------DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDL 265 (340)
T ss_dssp SSCEE--EEEEEE-------SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCE
T ss_pred CCceE--EEcCCC-------CccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEE
Confidence 43321 111111 245899999999998884 6788999998754332221110113456778887644444
Q ss_pred EEEE
Q 001248 1011 YACF 1014 (1114)
Q Consensus 1011 ~s~s 1014 (1114)
.+++
T Consensus 266 wva~ 269 (340)
T d1v04a_ 266 WVGC 269 (340)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=93.42 E-value=4.3 Score=42.69 Aligned_cols=52 Identities=15% Similarity=0.140 Sum_probs=37.9
Q ss_pred CCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCcccc--cc------CCCCCCeEEEEEecC
Q 001248 819 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMA--TF------MPPPPAATFLAFHPQ 870 (1114)
Q Consensus 819 ~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~--~~------~~~~~~i~~l~~sp~ 870 (1114)
...++++|.|||+++++-- .|+|++++..++.... .+ .........++|+|+
T Consensus 27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 4577999999999999886 7999999887765321 11 112346788999983
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.68 E-value=1.6 Score=44.59 Aligned_cols=187 Identities=10% Similarity=0.009 Sum_probs=103.7
Q ss_pred cceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCC
Q 001248 752 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 831 (1114)
Q Consensus 752 ~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~ 831 (1114)
....-+++++....+++++.++ +.|-.+..-.... -....+....... .-..|..++|+.|
T Consensus 37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~------------~~~~~~~~~~~~~----~ip~v~~vafs~d-- 97 (381)
T d1xipa_ 37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHI------------TSDSTPLTFKWEK----EIPDVIFVCFHGD-- 97 (381)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHH------------HSSSCCCCCSEEE----ECTTEEEEEEETT--
T ss_pred cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHh------------hccCCCCcceecc----CCCCeEEEEeeCC--
Confidence 3455678888877777777775 4555543210000 0000000000000 1124778888755
Q ss_pred EEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecc-----cccCee
Q 001248 832 YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG-----HSKRIT 906 (1114)
Q Consensus 832 ~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~-----h~~~V~ 906 (1114)
.+++..++.+..++..+.............+..+.++| ..++....+|.+.++++..++......+ -++.+.
T Consensus 98 ~l~v~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p---~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~ 174 (381)
T d1xipa_ 98 QVLVSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN---NTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQL 174 (381)
T ss_dssp EEEEEESSEEEEEESSSTTCEEEEEECSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEE
T ss_pred EEEEEeCCCEEEEEeeccccccccccccccccceecCC---ceeEEEecCCCEEEEEeccCccccccCCcceEEecCCce
Confidence 57777788888888876544444333455678888877 3566677899999999988753322211 235577
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEE-eCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE
Q 001248 907 GLAFSHALNVLVSSGADSQLCVW-SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 969 (1114)
Q Consensus 907 ~l~~s~d~~~l~s~s~D~~v~iw-d~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~ 969 (1114)
+++|++.|+.++++..++ ..+- ++.. ...+..... ....+.++.|-.+..++++
T Consensus 175 ~v~ws~kgkq~v~~~g~~-~q~k~~i~~-----~~~~~~p~~---~~~~v~sI~WL~~~~F~vv 229 (381)
T d1xipa_ 175 AVLLKDRSFQSFAWRNGE-MEKQFEFSL-----PSELEELPV---EEYSPLSVTILSPQDFLAV 229 (381)
T ss_dssp EEEETTSCEEEEEEETTE-EEEEEEECC-----CHHHHTSCT---TTSEEEEEEESSSSEEEEE
T ss_pred EEEEeCCcEEEEEeCCCc-eeeccCCCC-----ccccCCCcC---CCcceeEEEEecCceEEEE
Confidence 888888888777764332 2211 1111 111111111 1135678888877777776
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.03 E-value=3.2 Score=40.45 Aligned_cols=217 Identities=12% Similarity=0.074 Sum_probs=100.7
Q ss_pred CeEEEEEcCCCcc--ccccCCCCCCeEEEEEecCCCcEEEEEeCC---------CcEEEEEcccceEE--EeecccccCe
Q 001248 839 GKISLFNMMTFKT--MATFMPPPPAATFLAFHPQDNNIIAIGMDD---------SSIQIYNVRVDEVK--SKLKGHSKRI 905 (1114)
Q Consensus 839 g~i~iwd~~~~~~--~~~~~~~~~~i~~l~~sp~d~~~la~g~~d---------g~v~iwd~~~~~~~--~~l~~h~~~V 905 (1114)
..+.+||..+.+- +..+......-. ++. - ++++++.|+.. ..+.+||..+.+-. ..+......-
T Consensus 19 ~~~~~yd~~t~~W~~~~~~p~~R~~~~-~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~ 95 (288)
T d1zgka1 19 SYLEAYNPSNGTWLRLADLQVPRSGLA-GCV-V-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRI 95 (288)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCE-EEE-E-TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTC
T ss_pred ceEEEEECCCCeEEECCCCCCccceeE-EEE-E-CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecce
Confidence 4588999887543 222332222222 222 2 56777777631 36778888765432 2221111111
Q ss_pred eEEEEcCCCCEEEEEeCCCc-----EEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-Ee-----CCe
Q 001248 906 TGLAFSHALNVLVSSGADSQ-----LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VH-----ETQ 974 (1114)
Q Consensus 906 ~~l~~s~d~~~l~s~s~D~~-----v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~-----d~~ 974 (1114)
.++. .+++.++.++.++. ...++..+..-... ...... ..-..+... ++..++. +. ...
T Consensus 96 ~~~~--~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----r~~~~~~~~-~~~~~~~GG~~~~~~~~~ 165 (288)
T d1zgka1 96 GVGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLV---APMLTR----RIGVGVAVL-NRLLYAVGGFDGTNRLNS 165 (288)
T ss_dssp EEEE--ETTEEEEECCEETTEECCCEEEEETTTTEEEEC---CCCSSC----CBSCEEEEE-TTEEEEECCBCSSCBCCC
T ss_pred eccc--cceeeEEecceecccccceeeeeccccCccccc---cccccc----cccceeeee-eecceEecCcccccccce
Confidence 2222 25666666655443 34466655332111 111000 011222222 3444444 22 235
Q ss_pred EEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcC-----CeEEEEEcCCCeeeEEeCCCcccCCCCCCCCcc
Q 001248 975 LAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVH 1049 (1114)
Q Consensus 975 i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D-----g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 1049 (1114)
+..||..+.+....-.. .....-.+.+. .++..++.++.+ .....+|..+.+....-. .+... ..
T Consensus 166 ~~~~d~~~~~~~~~~~~-~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~----~p~~r----~~ 235 (288)
T d1zgka1 166 AECYYPERNEWRMITAM-NTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP----MKHRR----SA 235 (288)
T ss_dssp EEEEETTTTEEEECCCC-SSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCC----CSSCC----BS
T ss_pred EEEeecccccccccccc-ccccccccccc-eeeeEEEecCccccccccceeeeeecceeeecccC----ccCcc----cc
Confidence 78888877654322211 11111122222 245555655544 346778887766543211 11111 11
Q ss_pred ceEEEecCCCCCeEEEEeCCC-----cEEEEeccCCC
Q 001248 1050 PLVIAAHPQEPNEFALGLSDG-----GVHVFEPLESE 1081 (1114)
Q Consensus 1050 ~~~~~~~~~d~~~l~s~~~Dg-----~v~vW~i~~~~ 1081 (1114)
. +++.. ++++++.|+.++ .+.+||+.+.+
T Consensus 236 ~-~~~~~--~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 269 (288)
T d1zgka1 236 L-GITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT 269 (288)
T ss_dssp C-EEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred e-EEEEE--CCEEEEEecCCCCeecceEEEEECCCCE
Confidence 1 23333 467888887665 37889998865
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.39 E-value=12 Score=37.66 Aligned_cols=184 Identities=11% Similarity=0.098 Sum_probs=105.1
Q ss_pred CCccEEEEeeCCCEEEEEeCCeEEEEEcCCCcc---------ccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEc
Q 001248 819 EAVPCFALSKNDSYVMSASGGKISLFNMMTFKT---------MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV 889 (1114)
Q Consensus 819 ~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~---------~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~ 889 (1114)
....-+++++...+++.|+...+.|..+..-.. ....+..-..|..++|+- + .|++. .++.+..++.
T Consensus 37 ~~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~-d--~l~v~-~~~~l~~~~~ 112 (381)
T d1xipa_ 37 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHG-D--QVLVS-TRNALYSLDL 112 (381)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEET-T--EEEEE-ESSEEEEEES
T ss_pred cccceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeC-C--EEEEE-eCCCEEEEEe
Confidence 445678888888888888866788877532110 011111123589999985 3 45544 4566888877
Q ss_pred ccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE
Q 001248 890 RVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 969 (1114)
Q Consensus 890 ~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~ 969 (1114)
.+-........-..++.++.++|. .++....++.+.++++..++...... ........+.+.+++|++.|+.+++
T Consensus 113 ~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~---~v~~~~~~~~~~~v~ws~kgkq~v~ 187 (381)
T d1xipa_ 113 EELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQ---NVTSFDVTNSQLAVLLKDRSFQSFA 187 (381)
T ss_dssp SSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEE---SEEEEEECSSEEEEEETTSCEEEEE
T ss_pred eccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccC---CcceEEecCCceEEEEeCCcEEEEE
Confidence 663333333333456788888774 56677778999999998864322110 0000001135678888888888877
Q ss_pred EeCCeEEEE-EcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEE
Q 001248 970 VHETQLAIF-ETTKLECVKQWVPRESSAPITHATFSCDSQLVYAC 1013 (1114)
Q Consensus 970 ~~d~~i~iw-d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~ 1013 (1114)
+..+...+. ++.....+.. .......|.+|.|-.+..++++-
T Consensus 188 ~~g~~~q~k~~i~~~~~~~~--p~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 188 WRNGEMEKQFEFSLPSELEE--LPVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp EETTEEEEEEEECCCHHHHT--SCTTTSEEEEEEESSSSEEEEEE
T ss_pred eCCCceeeccCCCCccccCC--CcCCCcceeEEEEecCceEEEEE
Confidence 644433321 1111111110 01234578899998877777644
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=87.93 E-value=8.9 Score=34.30 Aligned_cols=168 Identities=14% Similarity=0.108 Sum_probs=99.5
Q ss_pred EEEEEcCCCccccccCCCC-CCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEE--eeccc-------ccCeeEEEE
Q 001248 841 ISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS--KLKGH-------SKRITGLAF 910 (1114)
Q Consensus 841 i~iwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~--~l~~h-------~~~V~~l~~ 910 (1114)
|.+-+++....-..+.... -.|.++++. |.+.+.+|+....+.+|-++.|++.. .+.+. .+.|..+.|
T Consensus 84 i~~~Nlk~~GEE~~i~spk~vRI~S~~yd--dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~ 161 (313)
T d2hu7a1 84 LFKVNTSRPGEEQRLEAVKPMRILSGVDT--GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGF 161 (313)
T ss_dssp EEEEETTSTTCEEECTTSCSBEEEEEEEC--SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEE
T ss_pred EEEEccCCCCeeeEecCCceEEEEEeeec--CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEee
Confidence 5555655322223333222 346666664 78899999999999999998876432 22221 233444444
Q ss_pred c-CCCCEEEEEeC-CCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-E--eCCeEEEEEcCCCce
Q 001248 911 S-HALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V--HETQLAIFETTKLEC 985 (1114)
Q Consensus 911 s-~d~~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~--~d~~i~iwd~~~~~~ 985 (1114)
- +..+-++++.- .|.++|++-.. +.++....+++.+..+- - .+.....+|.++++.
T Consensus 162 ~~g~~~sfF~adl~SG~lri~tpke-------------------GS~~~ay~~~gnKV~sdyEt~gEsywit~D~~s~~y 222 (313)
T d2hu7a1 162 FGGGRVSLFTSNLSSGGLRVFDSGE-------------------GSFSSASISPGMKVTAGLETAREARLVTVDPRDGSV 222 (313)
T ss_dssp EETTEEEEEEEETTTEEEEEECCSS-------------------EEEEEEEECTTSCEEEEEEESSCEEEEEECTTTCCE
T ss_pred ecCCcceEEEEecccCCEEEecCCC-------------------CcccceeEccCceeeeccCCCCceEEEEEecccCce
Confidence 3 33333555554 66777776554 34566677777776322 1 222333568887665
Q ss_pred eeeeecCC-----CCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeE
Q 001248 986 VKQWVPRE-----SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRC 1031 (1114)
Q Consensus 986 ~~~~~~~~-----h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~ 1031 (1114)
-+.-.+.. ..-.|+-+-+.||+++++.+-.||.=++|. +|+.+.
T Consensus 223 erve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~--nGk~in 271 (313)
T d2hu7a1 223 EDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI--DGERVE 271 (313)
T ss_dssp EECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE--TTEEEC
T ss_pred eeeecCcccceeecceEEEeeeeCCCCcEEEEEecCCchheee--cceEec
Confidence 44322110 123466667999999999999999999987 666664
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=85.69 E-value=12 Score=33.48 Aligned_cols=207 Identities=13% Similarity=0.162 Sum_probs=99.4
Q ss_pred CCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEE
Q 001248 369 VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYS 448 (1114)
Q Consensus 369 dg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd 448 (1114)
++..+++++...|.|.++-+..++.+.- . ..+|....- |.. +-|..+.+-|
T Consensus 24 ~~d~ll~~~~seG~vni~~l~g~~~vkL--------------------t--kePI~~~~~-Pk~------~ldfi~f~RD 74 (313)
T d2hu7a1 24 DGDKLLVVGFSEGSVNAYLYDGGETVKL--------------------N--REPINSVLD-PHY------GVGRVILVRD 74 (313)
T ss_dssp TTTEEEEEEEETTEEEEEEESSSSCEEC--------------------C--SSCCSEECE-ECT------TBSEEEEEEE
T ss_pred cCCcEEEEEeccceEEEEEEeCCEEEEE--------------------e--cccccCcCC-Ccc------CcceEEEEee
Confidence 3444788998999999999998877651 1 112222111 111 0122233333
Q ss_pred ccCCceeeeeE-----------eeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCccee--Eeecc-------
Q 001248 449 YHGGDEVRQHL-----------EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY--IFEGH------- 508 (1114)
Q Consensus 449 ~~~~~~~~~~~-----------~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~h------- 508 (1114)
+..|+..+... .+.. ..+|.-+....|++. .+++|+......+|-++.|+... .+.+.
T Consensus 75 V~kGkE~Hai~~~Nlk~~GEE~~i~s-pk~vRI~S~~yddk~-vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~ 152 (313)
T d2hu7a1 75 VSKGAEQHALFKVNTSRPGEEQRLEA-VKPMRILSGVDTGEA-VVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIR 152 (313)
T ss_dssp CSTTSCCEEEEEEETTSTTCEEECTT-SCSBEEEEEEECSSC-EEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEE
T ss_pred hhcCcceeeEEEEccCCCCeeeEecC-CceEEEEEeeecCce-EEEecccCCceEEEEEeCCceeeeccCCCcceEEecc
Confidence 43333332211 1221 223444444456666 56777777777888877776432 22211
Q ss_pred ccCEEEEeeccCCCceEEEEEec-CCeEEEEEcCCCCCeeeecCCCCeeEE----------EEEecCCC-e--------E
Q 001248 509 EAPVYSVCPHHKENIQFIFSTAL-DGKIKAWLYDNLGSRVDYEAPGRWCTT----------MAYSADGT-R--------T 568 (1114)
Q Consensus 509 ~~~v~~~~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~~~v~~----------~~~s~~g~-~--------~ 568 (1114)
..-|..+.+. .++..-++++.. .|.+++++...+..-..+...+..|.+ +.+.+... + -
T Consensus 153 ~d~I~G~g~~-~g~~~sfF~adl~SG~lri~tpkeGS~~~ay~~~gnKV~sdyEt~gEsywit~D~~s~~yerve~P~kd 231 (313)
T d2hu7a1 153 GDLIAGLGFF-GGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKD 231 (313)
T ss_dssp TTEEEEEEEE-ETTEEEEEEEETTTEEEEEECCSSEEEEEEEECTTSCEEEEEEESSCEEEEEECTTTCCEEECCCSSCH
T ss_pred CCeEEEEeee-cCCcceEEEEecccCCEEEecCCCCcccceeEccCceeeeccCCCCceEEEEEecccCceeeeecCccc
Confidence 1223333332 222233455544 777777765543222222222222211 12222111 0 0
Q ss_pred EeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceE
Q 001248 569 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL 609 (1114)
Q Consensus 569 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 609 (1114)
+.....-.+..+-+.|++.+++.+-.||.-.+|. +|+.+
T Consensus 232 ~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~--nGk~i 270 (313)
T d2hu7a1 232 FSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI--DGERV 270 (313)
T ss_dssp HHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE--TTEEE
T ss_pred ceeecceEEEeeeeCCCCcEEEEEecCCchheee--cceEe
Confidence 1111222344456778888777777888777776 44444
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.60 E-value=13 Score=35.57 Aligned_cols=186 Identities=11% Similarity=0.043 Sum_probs=85.6
Q ss_pred eCCCEEEEEe-C---------CeEEEEEcCCCcccc--ccCCCCCCeEEEEEecCCCcEEEEEeCCCc-----EEEEEcc
Q 001248 828 KNDSYVMSAS-G---------GKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDDSS-----IQIYNVR 890 (1114)
Q Consensus 828 ~d~~~l~~~~-d---------g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~la~g~~dg~-----v~iwd~~ 890 (1114)
-+++.++.|+ . ..+.+||..+..... .+........++.+ ++++++.|+.++. ...+|..
T Consensus 49 ~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~~~~---~~~i~~~gg~~~~~~~~~~~~~~~~ 125 (288)
T d1zgka1 49 VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPE 125 (288)
T ss_dssp ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE---TTEEEEECCEETTEECCCEEEEETT
T ss_pred ECCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecceecccc---ceeeEEecceecccccceeeeeccc
Confidence 3566666653 1 347788876543322 12211111222222 5677777765554 4446665
Q ss_pred cceEEEeec--ccccCeeEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccC
Q 001248 891 VDEVKSKLK--GHSKRITGLAFSHALNVLVSSGAD-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 963 (1114)
Q Consensus 891 ~~~~~~~l~--~h~~~V~~l~~s~d~~~l~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspd 963 (1114)
+..-...-. ....... +... ++..++.|+.+ ..+..||..+.+.......... ..-...+. .+
T Consensus 126 ~~~~~~~~~~~~~r~~~~-~~~~-~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-------~~~~~~~~-~~ 195 (288)
T d1zgka1 126 RDEWHLVAPMLTRRIGVG-VAVL-NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTI-------RSGAGVCV-LH 195 (288)
T ss_dssp TTEEEECCCCSSCCBSCE-EEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSC-------CBSCEEEE-ET
T ss_pred cCccccccccccccccce-eeee-eecceEecCcccccccceEEEeeccccccccccccccc-------cccccccc-ee
Confidence 543222111 1111111 2222 44556666554 3577888776443221111110 01122222 33
Q ss_pred CcEEEE-EeC-----CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCC-----eEEEEEcCCCe
Q 001248 964 QIHFLV-VHE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-----TVCVFSAANLK 1028 (1114)
Q Consensus 964 g~~l~~-~~d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg-----~I~vwd~~~~~ 1028 (1114)
++.++. +.+ .....+|..+.+....-.. .....-.+++ ..++++++.|+.++ .|.+||+.+.+
T Consensus 196 ~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 269 (288)
T d1zgka1 196 NCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM-KHRRSALGIT-VHQGRIYVLGGYDGHTFLDSVECYDPDTDT 269 (288)
T ss_dssp TEEEEECCBCSSSBCCCEEEEETTTTEEEECCCC-SSCCBSCEEE-EETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred eeEEEecCccccccccceeeeeecceeeecccCc-cCcccceEEE-EECCEEEEEecCCCCeecceEEEEECCCCE
Confidence 444444 322 3567788776654432211 1111112233 23778888777654 38899998875
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=82.97 E-value=7.8 Score=40.57 Aligned_cols=61 Identities=8% Similarity=0.056 Sum_probs=39.8
Q ss_pred cCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccC
Q 001248 903 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 963 (1114)
Q Consensus 903 ~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspd 963 (1114)
..-++|+|.|||++|++--.+|.|++++..+++.....-+...............++|+|+
T Consensus 27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 4567999999999888775679999998877654332211111111111246788999985
|
| >d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: GyrA/ParC C-terminal domain-like family: GyrA/ParC C-terminal domain-like domain: Topoisomerase IV subunit A, ParC, C-terminal domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=80.48 E-value=28 Score=34.00 Aligned_cols=198 Identities=10% Similarity=0.102 Sum_probs=109.0
Q ss_pred CCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEE---eecccccCCC
Q 001248 712 ADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLW---KWQRTERNSS 788 (1114)
Q Consensus 712 ~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw---~~~~~~~~~~ 788 (1114)
++...+++-+.+|-|+--.+........ ....+ ...+.+..+........++.-+..|.++.- ++.......
T Consensus 3 ~~E~v~v~lS~~GyiKR~~~~~~~~~~~-~~~~~---k~~D~v~~~~~~~t~d~ll~fT~~Grvy~l~v~eiP~~~~~s- 77 (323)
T d1wp5a_ 3 ASEDVIVTVTKDGYVKRTSLRSYAASNG-QDFAM---KDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKD- 77 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTT-CCCCC---CTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTS-
T ss_pred CCCCEEEEEeCCCeEEEeeHHHhhhcCC-CCCcc---cCCceEEEEEEEcCCCEEEEEecCCEEEEEeeccCccccccc-
Confidence 3556677888888887655443211100 01111 134456666666566666666677665532 222111111
Q ss_pred CCccccccccccCCCCCccccccCCCCCCCCCccEEE-Eee--CCCEEEEEe-CCeEEEEEcCCCccc--------cccC
Q 001248 789 GKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA-LSK--NDSYVMSAS-GGKISLFNMMTFKTM--------ATFM 856 (1114)
Q Consensus 789 ~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~-~s~--d~~~l~~~~-dg~i~iwd~~~~~~~--------~~~~ 856 (1114)
.|..+...+.. .....+..+. ..+ ...+|+..+ .|.++..++...... ..+.
T Consensus 78 ---------------~G~pi~~ll~l-~~~e~ii~~~~~~~~~~~~~l~~~Tk~G~iKr~~l~~f~~~~~~~g~~~i~L~ 141 (323)
T d1wp5a_ 78 ---------------LGQHIANIIPI-DRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLK 141 (323)
T ss_dssp ---------------CCEEGGGTSCC-CTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCC
T ss_pred ---------------ccccceeeecc-cCCcceEEEeeccccccceeEEEEeehhheeeccHHHhhhhhccchhhhcccc
Confidence 23333333322 2334444433 332 245666666 899999987543221 1222
Q ss_pred CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEE---------EeecccccCeeE-EEEcCCCCEEEEEeCCCcE
Q 001248 857 PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK---------SKLKGHSKRITG-LAFSHALNVLVSSGADSQL 926 (1114)
Q Consensus 857 ~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~---------~~l~~h~~~V~~-l~~s~d~~~l~s~s~D~~v 926 (1114)
....+..+.+.. +...++.++..|.+..++...-... ..+. ..+.|.+ ....+++..|+..+..|..
T Consensus 142 -~~D~l~~v~~~~-~~~~i~l~t~~G~~lrf~~~~vr~~gr~a~GV~~ikL~-~~D~vv~~~~~~~~~~~ll~~T~~G~g 218 (323)
T d1wp5a_ 142 -NDDQVVDVHLTD-GMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAV 218 (323)
T ss_dssp -TTCCEEEEEEEC-SCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEE
T ss_pred -ccccccceeccC-CCeEEEEEEecceeeEeecccccccCcccccccccccc-cccccchhhhccccccceeeeeeehee
Confidence 345677777776 6677888999999999987642211 2222 2344544 3455667888999999988
Q ss_pred EEEeCCC
Q 001248 927 CVWSSDG 933 (1114)
Q Consensus 927 ~iwd~~~ 933 (1114)
+.-.+..
T Consensus 219 Kr~~~~e 225 (323)
T d1wp5a_ 219 KKMKLTE 225 (323)
T ss_dssp EEEEGGG
T ss_pred ecccchh
Confidence 8766554
|