Citrus Sinensis ID: 001260

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110---
MCSLPKAGGALKPVNGGSMEFAHLFCSLLMPEVYIEDTMKVEPLMNVGGIKETRMKLVCNICRVKCGACVRCSHGTCRTSFHPICAREARHRLEVWGKYGCNNVELRAFCAKHSDIQDNSSTPRTGDPCSAIGSESCVSNNLHETLSMSKLHKLKFSCKNGDKIGVHTETSDANSDRSTDSEVTGFSDSRLISVPTSECTNAGKPDRSEFEDVNPSDALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLVKWLSNHAYLGGLLKNVKLKIKSSISSKADIKNSDSDGLMVSESDVADPVAVKSVPPRRRTKSSIRILRDDKMVSSSEEIFSGNGIAADKDEVKVEQLDGEEPAIHNKVSTPDCTEKSPTDPTGSEDSLARGSPMSEGSAAKPSDCGFFESCQSEEAALPDQINLLNVDQENPICSSVDTLVPYFINAKPSSGFFWHPYIHKSLQMQSGLLSGNKVHKSDEISRLEASSTASVCCNHQGRHSKCNDMSCKSDGVNLEQVFKARTRGVLELSPTDEVEGEIIYFQHRLLGNAFSRKRLADNLVCKAVKTLNQEIDVARGRRWDAVLVNQYLCELREAKKQGRKERRHKEAQAVLAAATAAAAASSRISSFRKDSLEESASQENLLKLSSHNGRAAISSQVMSRAKETLSRVAVPRILSDKNSDSLQSVSDFSKEHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAECSLCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRGQVNPVAGMEAFPKGIDVCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSLEQKMKAETQKHGVEELKGIKQIRVELERLRLLCERIIKREKIKRELILCSHEILAFKRDHHAARLVHGRIPFFPPDVSSESATTSLKGHTDSFKSCSEAFQRSDDVTVDSAASVKNRIKVYVPMDADQRTDDSSMSQNLYPRKPSERMQFSGKQIPHRPHLSRSLANEEEWSSKARKSCGTLEKEIVMTSDEASIKNRKLPKGFIFVPVNCLPKEKRINEEASSVEPVEPDG
ccccccccccccccccccccEEEHHHHccccccEEccccccccccccccccHHHHHccccccccccccEEEccccccccccccHHHHHccccEEEEcccccccEEEEEcccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccEEccccccccHHHHHHHccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEEEcccccHHccccccccccccccccccccHHcccccccccccccccccccccccEEEccccccccEEcccccEEEEEEcccccccccccccccccccccccccccccccccccccEEEEEcccccccccccHHHHHHccccEEEEccccccEEEEccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHcccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccc
ccccccccccccccccccccEEEEEEEEEccEEEEccccEEccccccccccHHHHHHHHHHHHHccccEEEEcccccEEEEHHHHHHHcccEEEEEEcccccccEEEEEEccccccccccccccccccccccccccccHccccccHHHHHHHHHccccccccccccccccccccccccccccHccccccccccccccccHccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHccccHHHHHHHHccccccccHHHHHHHHHHccccccccccccEEEEccccccHHccccccccccEEcccccccccEEEEcccccccccccEEEccccEEEEccEEEccccccccccccEccccccccccccccccccccccccccccccccccEEcccccccccEEccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccHHHHHHHHHccccHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccHHHHcccEEccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccEEEEcccccccccEEEEEccccEEEEHHHcccccccccccHHHHHHccccccccccccccccccccccccEEEcccccccccEcccccEEEEEEEEEccEEEEccccEccccccccccHHHHEHHHHHHccccEEEEcccccEEcccHHHHHHcccEEEEEccccEEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccccccHHcccccccccccccccccccEccccEEEEEEEEcccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccHHHHHcccccccEEEEEcccccccccccccccccccccccc
mcslpkaggalkpvnggsmEFAHLFCSLLmpevyiedtmkveplmnvggikeTRMKLVCNIcrvkcgacvrcshgtcrtsfhpiCAREARHRLEVWgkygcnnvELRAFCakhsdiqdnsstprtgdpcsaigsescvsnnlhetlsmsKLHKLKfsckngdkigvhtetsdansdrstdsevtgfsdsrlisvptsectnagkpdrsefedvnpsdaLNFTLILKKLIDrgkvnvkdiasdigispdllkttladgtfasdLQCKLVKWLSNHAYLGGLLKNVKLKIKssisskadiknsdsdglmvsesdvadpvavksvpprrrtkssirilrddkmvssseeifsgngiaadkdevkveqldgeepaihnkvstpdcteksptdptgsedslargspmsegsaakpsdcgffescqseeaalpdqinllnvdqenpicssvdtlvpyfinakpssgffwhpyihkslqmqsgllsgnkvhksdeisrleasstasvccnhqgrhskcndmscksdgvNLEQVFKARTrgvlelsptdevegEIIYFQHRLLGNAFSRKRLADNLVCKAVKTLNQEIDVARGRRWDAVLVNQYLCELREAKKQGRKERRHKEAQAVLAAATAAAAASSRISSFRKDSLEESASQENLLKLSSHNGRAAISSQVMSRAKETLSrvavprilsdknsdslqsvsdfskehprscdicrrsetilnpilicsgckvavHLDCYRnakestgpwYCELCEELLssrssgapsvnfwekpyfvaecslcggttgafrksangqWVHAFCAEWVFestfrrgqvnpvagmeafpkgidvccicrhkhgicikcnygncqttfhptcarsagfylnvkstggnfqhkayCEKHSLEQKMKAETQKHGVEELKGIKQIRVELERLRLLCERIIKREKIKRELILCSHEILAFKRDHHAARlvhgripffppdvssesattslkghtdsfkscseafqrsddvtvdsaASVKNRIkvyvpmdadqrtddssmsqnlyprkpsermqfsgkqiphrphlsrslaneeewSSKARKSCGTLEKEIVMTSDeasiknrklpkgfifvpvnclpkekrineeassvepvepdg
MCSLPKAGGALKPVNGGSMEFAHLFCSLLMPEVYIEDTMKVEPLMNVGGIKETRMKLVCNICRVKCGACVRCSHGTCRTSFHPICAREARHRLEVWGKYGCNNVELRAFCAKHsdiqdnsstprtGDPCSAIGSESCVSNNLHETLSMSKLHKLKFSCKNGDKIGVhtetsdansdrstdsevtgfsdsrlisvptsectnagkpdrsefedvnpsDALNFTLILKKLIDRGKVNVKdiasdigispdLLKTTLADGTFASDLQCKLVKWLSNHAYLGGLLKNVKLKIKSSIsskadiknsdsdglmvsesdvadpvavksvpprrrtkssirilrddkmvssseeifsgngiaadkdeVKVEQLDGEepaihnkvstpdcteksptdptgsedslARGSPMSEGSAAKPSDCGFFESCQSEEAALPDQINLLNVDQENPICSSVDTLVPYFINAKPSSGFFWHPYIHKSLQMQSGLLSGNKVHKSDEISRLEASSTASVCCNHQGRHSKCNDMSCKSDGVNLEQVFKArtrgvlelsptdevEGEIIYFQHRLLGNAFSRKRLADNLVCKAVKTLNqeidvargrrwDAVLVNQYLCELREAKKQGRKERRHKEAQAVLAAATAAAAASSRISSFRKDSLEESASQENLLKLSSHNGRAAISSQVMSRAKETLSrvavprilsdknsdslqsvsdfskehprscDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAECSLCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRGQVNPVAGMEAFPKGIDVCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSLEQKMKAEtqkhgveelkgikqirvELERLRLLCERIikrekikrelILCSHEILAFKRDHHAARLVHGRIPFFPPDVSSESATTSLKGHTDSFKSCSEafqrsddvtvdsaasvknrikvyvpmdadqrtddssmsqnlyprkpsermqfsgkqiphrphlsrslaneeewsskarkscgtleKEIVMTsdeasiknrklpkgfifvPVNCLPkekrineeassvepvepdg
MCSLPKAGGALKPVNGGSMEFAHLFCSLLMPEVYIEDTMKVEPLMNVGGIKETRMKLVCNICRVKCGACVRCSHGTCRTSFHPICAREARHRLEVWGKYGCNNVELRAFCAKHSDIQDNSSTPRTGDPCSAIGSESCVSNNLHETLSMSKLHKLKFSCKNGDKIGVHTETSDANSDRSTDSEVTGFSDSRLISVPTSECTNAGKPDRSEFEDVNPSDALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLVKWLSNHAYLGGllknvklkikssisskadiknsdsdGLMVSESDVADPVAVKSVPPRRRTKSSIRILRDDKMVSSSEEIFSGNGIAADKDEVKVEQLDGEEPAIHNKVSTPDCTEKSPTDPTGSEDSLARGSPMSEGSAAKPSDCGFFESCQSEEAALPDQINLLNVDQENPICSSVDTLVPYFINAKPSSGFFWHPYIHKSLQMQSGLLSGNKVHKSDEISRLEASSTASVCCNHQGRHSKCNDMSCKSDGVNLEQVFKARTRGVLELSPTDEVEGEIIYFQHRLLGNAFSRKRLADNLVCKAVKTLNQEIDVARGRRWDAVLVNQYLCELREAKKQGRKERRHKEaqavlaaataaaaaSSRISSFRKDSLEESASQENLLKLSSHNGRAAISSQVMSRAKETLSRVAVPRILSDKNSDSLQSVSDFSKEHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYcelceellssrssGAPSVNFWEKPYFVAECSLCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRGQVNPVAGMEAFPKGIDVCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSLEQKMKAETQKHGVEELKGIKQirvelerlrllceriikrekikreLILCSHEILAFKRDHHAARLVHGRIPFFPPDVSSESATTSLKGHTDSFKSCSEAFQRSDDVTVDSAASVKNRIKVYVPMDADQRTDDSSMSQNLYPRKPSERMQFSGKQIPHRPHLSRSLANEEEWSSKARKSCGTLEKEIVMTSDEASIKNRKLPKGFIFVPVNCLPKEKRINEEASSVEPVEPDG
****************GSMEFAHLFCSLLMPEVYIEDTMKVEPLMNVGGIKETRMKLVCNICRVKCGACVRCSHGTCRTSFHPICAREARHRLEVWGKYGCNNVELRAFCAKH********************************************************************************************************ALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLVKWLSNHAYLGGLLKNVKLKI*****************************************************************************************************************************************LPDQINLLNVDQENPICSSVDTLVPYFINAKPSSGFFWHPYIHKSLQM**************************VCCN************C**DGVNLEQVFKARTRGVLELSPTDEVEGEIIYFQHRLLGNAFSRKRLADNLVCKAVKTLNQEIDVARGRRWDAVLVNQYLCELR*******************************************************************************************************CDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAECSLCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRGQVNPVAGMEAFPKGIDVCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCE*****************EELKGIKQIRVELERLRLLCERIIKREKIKRELILCSHEILAFKRDHHAARLVHGRIPFF********************************************IKVY*****************************************************************************KLPKGFIFVPVNCL********************
MCSLPKAGGALKPVNGGSMEFAHLFCSLLMPEVYIEDTMKVEPLMNVGGIKETRMKLVCNICRVKCGACVRCSHGTCRTSFHPICAREARHRLEVWGKYGCNNVELRAFCAK**********************************************************************************************************LNFTLILKKLIDRGKVNVKDIASDIGI*************FASDLQCKLVKWLS*******************************************************************MV************************************************************************************************ENPICSSVDTLV**FINAKPSSGFFWHPYIH*************************************************************************EVEGEIIYFQHRL*********LADNL********************************************************AAAAASSRISSFRKDSLEESASQENLL***********************************************KEHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELLSSRS*******FWEKPYFVAECSLCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRGQVNPVAGMEAFPKGIDVCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEK**************************************************LCSHEILAFKRDHHAARL***********************************************************************************************************************************************************************
MCSLPKAGGALKPVNGGSMEFAHLFCSLLMPEVYIEDTMKVEPLMNVGGIKETRMKLVCNICRVKCGACVRCSHGTCRTSFHPICAREARHRLEVWGKYGCNNVELRAFCAKHSD***************AIGSESCVSNNLHETLSMSKLHKLKFSCKNGDKIGVHT****************GFSDSRLISVPTSECTNAGKPDRSEFEDVNPSDALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLVKWLSNHAYLGGLLKNVKLKIKSSISSKADIKNSDSDGLMVSESDVAD**************SSIRILRDDKMVSSSEEIFSGNGIAADKDEVKVEQLDGEEPAIHNKVS********************************PSDCGFFESCQSEEAALPDQINLLNVDQENPICSSVDTLVPYFINAKPSSGFFWHPYIHKSLQMQSGLLSGNKVHKSDEISRLEASSTASVCCNHQGRHSKCNDMSCKSDGVNLEQVFKARTRGVLELSPTDEVEGEIIYFQHRLLGNAFSRKRLADNLVCKAVKTLNQEIDVARGRRWDAVLVNQYLCELREA********************************************ENLLKLSSHNGRAAISSQVMSRAKETLSRVAVPRILSDK******************CDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAECSLCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRGQVNPVAGMEAFPKGIDVCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSLEQKMKAETQKHGVEELKGIKQIRVELERLRLLCERIIKREKIKRELILCSHEILAFKRDHHAARLVHGRIPFFPPDV***************FKSCSEAFQRSDDVTVDSAASVKNRIKVYVPMDAD**********NLYPRKP**********************************CGTLEKEIVMTSDEASIKNRKLPKGFIFVPVNCLPKEKRIN*************
*CS**KAGGALKPVNGGSMEFAHLFCSLLMPEVYIEDTMKVEPLMNVGGIKETRMKLVCNICRVKCGACVRCSHGTCRTSFHPICAREARHRLEVWGKYGCNNVELRAFCAKHS*****************************************************************************************************SDALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLVKWLSNHAYLGGLLKNVKLKIKSS***************MVSESDVADPVAVKSVPPRRRTKSSIRILRDDKMVSSSEEIFSGNGIAADKDEVKVEQLDG******************************RGSPMSEGSAAKPSDCGFFESCQSEEAALPDQINLLNVDQENPICSSVDTLVPYFINAKPSSGFFWHPYIHKSLQMQSGLLSGNKVHK*********************************DGVNLEQVFKARTRGVLELSPTDEVEGEIIYFQHRLLGNAFSRKRLADNLVCKAVKTLNQEIDVARGRRWDAVLVNQYLCELREAKKQGR**********VLAAATAAAAASSRISSFRKDSLEESASQENLLKLSSHNGRAAISSQVMSRAKETLSRVAVPRILSDKNSDSLQSVSDFSKEHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELL****************YFVAECSLCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRGQVNPVAGMEAFPKGIDVCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKH*********************KQIRVELERLRLLCERIIKREKIKRELILCSHEILAFKRDHHAARLVHGRIPFFPPD************************QRSDDVTVDSAASVKNRIKVYVPM********************************************************TLEKEIVMTSDEASIKNRKLPKGFIFVPVNCLP*******************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MCSLPKAGGALKPVNGGSMEFAHLFCSLLMPEVYIEDTMKVEPLMNVGGIKETRMKLVCNICRVKCGACVRCSHGTCRTSFHPICAREARHRLEVWGKYGCNNVELRAFCAKHSDIQDNSSTPRTGDPCSAIGSESCVSNNLHETLSMSKLHKLKFSCKNGDKIGVHTETSDANSDRSTDSEVTGFSDSRLISVPTSECTNAGKPDRSEFEDVNPSDALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLVKWLSNHAYLGGLLKNVKLKIKSSISSKADIKNSDSDGLMVSESDVADPVAVKSVPPRRRTKSSIRILRDDKMVSSSEEIFSGNGIAADKDEVKVEQLDGEEPAIHNKVSTPDCTEKSPTDPTGSEDSLARGSPMSEGSAAKPSDCGFFESCQSEEAALPDQINLLNVDQENPICSSVDTLVPYFINAKPSSGFFWHPYIHKSLQMQSGLLSGNKVHKSDEISRLEASSTASVCCNHQGRHSKCNDMSCKSDGVNLEQVFKARTRGVLELSPTDEVEGEIIYFQHRLLGNAFSRKRLADNLVCKAVKTLNQEIDVARGRRWDAVLVNQYLCELREAKKQGRKERRHKEAQAVLAAATAAAAASSRISSFRKDSLEESASQENLLKLSSHNGRAAISSQVMSRAKETLSRVAVPRILSDKNSDSLQSVSDFSKEHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAECSLCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRGQVNPVAGMEAFPKGIDVCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSLEQKMKAETQKHGVEELKGxxxxxxxxxxxxxxxxxxxxxEKIKRELILCSHEILAFKRDHHAARLVHGRIPFFPPDVSSESATTSLKGHTDSFKSCSEAFQRSDDVTVDSAASVKNRIKVYVPMDADQRTDDSSMSQNLYPRKPSERMQFSGKQIPHRPHLSRSLANEEEWSSKARKSCGTLEKEIVMTSDEASIKNRKLPKGFIFVPVNCLPKEKRINEEASSVEPVEPDG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1113 2.2.26 [Sep-21-2011]
P55201 1214 Peregrin OS=Homo sapiens yes no 0.178 0.163 0.298 2e-21
Q12311748 NuA3 HAT complex componen yes no 0.202 0.300 0.307 4e-21
O95696 1058 Bromodomain-containing pr no no 0.133 0.140 0.344 2e-20
O74759 767 Mst2 complex subunit nto1 yes no 0.143 0.208 0.316 9e-20
Q9ULD4 1205 Bromodomain and PHD finge no no 0.133 0.123 0.316 1e-19
Q7YZH1 3241 PHD finger protein rhinoc no no 0.153 0.052 0.277 1e-18
Q9C5X41062 Histone-lysine N-methyltr no no 0.117 0.123 0.34 3e-18
Q92613 823 Protein Jade-3 OS=Homo sa no no 0.221 0.298 0.277 6e-18
Q6IE82 823 Protein Jade-3 OS=Mus mus no no 0.257 0.348 0.259 8e-18
P0CB221083 Histone-lysine N-methyltr no no 0.077 0.079 0.454 4e-17
>sp|P55201|BRPF1_HUMAN Peregrin OS=Homo sapiens GN=BRPF1 PE=1 SV=2 Back     alignment and function desciption
 Score =  105 bits (262), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 107/238 (44%), Gaps = 39/238 (16%)

Query: 666 VMSRAKETLSRVAVPRILSDKNSDSLQSVSDF---SKEHPRS-------CDICRRSE-TI 714
           +M+  ++T     +P+ + +   D L+  S F   +K  P +       C IC   E   
Sbjct: 227 IMNERRKTEGVSPIPQEIFEYLMDRLEKESYFESHNKGDPNALVDEDAVCCICNDGECQN 286

Query: 715 LNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAEC 774
            N IL C  C +AVH +CY       G W C  C                 + P    +C
Sbjct: 287 SNVILFCDMCNLAVHQECYGVPYIPEGQWLCRRC----------------LQSPSRAVDC 330

Query: 775 SLCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRGQ-VNPVAGMEAFP--KGIDVCCICR 831
           +LC    GAF+++ +G+W H  CA W+ E  F     + P+  +E  P  +    C IC+
Sbjct: 331 ALCPNKGGAFKQTDDGRWAHVVCALWIPEVCFANTVFLEPIDSIEHIPPARWKLTCYICK 390

Query: 832 HK-HGICIKCNYGNCQTTFHPTCARSAGFYLN---VKSTGGN-----FQHKAYCEKHS 880
            +  G CI+C+  NC T FH TCA+ AG Y+    V+ TG N      +  AYC+ H+
Sbjct: 391 QRGSGACIQCHKANCYTAFHVTCAQQAGLYMKMEPVRETGANGTSFSVRKTAYCDIHT 448
Component of the MOZ/MORF complex which has a histone H3 acetyltransferase activity. Positively regulates the transcription of RUNX1 and RUNX2.
Homo sapiens (taxid: 9606)
>sp|Q12311|NTO1_YEAST NuA3 HAT complex component NTO1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NTO1 PE=1 SV=1 Back     alignment and function description
>sp|O95696|BRD1_HUMAN Bromodomain-containing protein 1 OS=Homo sapiens GN=BRD1 PE=1 SV=1 Back     alignment and function description
>sp|O74759|NTO1_SCHPO Mst2 complex subunit nto1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nto1 PE=1 SV=1 Back     alignment and function description
>sp|Q9ULD4|BRPF3_HUMAN Bromodomain and PHD finger-containing protein 3 OS=Homo sapiens GN=BRPF3 PE=1 SV=2 Back     alignment and function description
>sp|Q7YZH1|RNO_DROME PHD finger protein rhinoceros OS=Drosophila melanogaster GN=rno PE=1 SV=1 Back     alignment and function description
>sp|Q9C5X4|ATX1_ARATH Histone-lysine N-methyltransferase ATX1 OS=Arabidopsis thaliana GN=ATX1 PE=1 SV=2 Back     alignment and function description
>sp|Q92613|JADE3_HUMAN Protein Jade-3 OS=Homo sapiens GN=PHF16 PE=1 SV=1 Back     alignment and function description
>sp|Q6IE82|JADE3_MOUSE Protein Jade-3 OS=Mus musculus GN=Phf16 PE=2 SV=1 Back     alignment and function description
>sp|P0CB22|ATX2_ARATH Histone-lysine N-methyltransferase ATX2 OS=Arabidopsis thaliana GN=ATX2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1113
255545554 1478 phd finger protein, putative [Ricinus co 0.950 0.715 0.613 0.0
224084824 1429 predicted protein [Populus trichocarpa] 0.943 0.734 0.573 0.0
356518511 1428 PREDICTED: uncharacterized protein LOC10 0.955 0.745 0.554 0.0
449445230 1431 PREDICTED: uncharacterized protein LOC10 0.935 0.727 0.544 0.0
449479909 1403 PREDICTED: uncharacterized LOC101212864 0.910 0.722 0.538 0.0
357461689 1428 Protein Jade-1 [Medicago truncatula] gi| 0.963 0.750 0.524 0.0
302141882 1535 unnamed protein product [Vitis vinifera] 0.644 0.467 0.665 0.0
297839639 1426 PHD finger family protein [Arabidopsis l 0.938 0.732 0.483 0.0
224063154 1349 predicted protein [Populus trichocarpa] 0.558 0.461 0.709 0.0
12323292 1506 putative phorbol ester / diacylglycerol 0.929 0.687 0.458 0.0
>gi|255545554|ref|XP_002513837.1| phd finger protein, putative [Ricinus communis] gi|223546923|gb|EEF48420.1| phd finger protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1294 bits (3348), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 693/1129 (61%), Positives = 832/1129 (73%), Gaps = 71/1129 (6%)

Query: 5    PKAGGALKPVNGGS----MEFAHLFCSLLMPEVYIEDTMKVEPLMNVGGIKETRMKLVCN 60
            PK GGALKP+ G S    +EFAHLFCSL  PEVY+ED  K+E +M+V  IKETR KLVCN
Sbjct: 395  PKQGGALKPIGGESSGSILEFAHLFCSLWTPEVYVEDLTKMEKIMDVHEIKETRRKLVCN 454

Query: 61   ICRVKCGACVRCSHGTCRTSFHPICAREARHRLEVWGKYGCNNVELRAFCAKHSDIQDNS 120
            +C+VKCG CVRCSHGTCRT+FHPICAREARHR+EVWGKYG  NVELRAFC+KHS+  D S
Sbjct: 455  VCKVKCGVCVRCSHGTCRTAFHPICAREARHRMEVWGKYGYENVELRAFCSKHSEFPDGS 514

Query: 121  STPRTGDPCSAIGSESCVSNNLHETLSMSKLHKLKFSCKNGDKIGVHTETSDANSDRSTD 180
            +        S   S++  +N +  T    + HKLK   +NGDK+ VH ET D  SD+S D
Sbjct: 515  NLQLGKITAS---SDTSTANCIQTTSLTDRQHKLKIG-RNGDKLAVHVETRDTVSDKSGD 570

Query: 181  SEV--TGFSDSRLISVPTSEC------TNAGKPDRSEFEDVNPSDALNFTLILKKLIDRG 232
            +E    G SDSRL  +  S+C      +N G  +R + ED N S++L+F L+LK+LIDRG
Sbjct: 571  NESREIGLSDSRLDDLLISDCADGDHVSNMGLSERHDKEDPNISNSLDFALLLKQLIDRG 630

Query: 233  KVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLVKWLSNHAYLGGLLKNVKLKIKSSI 292
            KVN+KD+A +IGISPD L +TL D     DLQCK+VKWL NHAY+G   KN+++K+ S+I
Sbjct: 631  KVNLKDVALEIGISPDSLLSTL-DVILVPDLQCKIVKWLGNHAYMGSSHKNLRIKLNSTI 689

Query: 293  SSKADIK-NSDSDGLMVSESDVADPVAVKSVPPRRRTKSSIRILRDDKMVSSSEEIFSGN 351
             S+ +++ N  SD + +SESD+ D VAVKSVPPRRRTKS IRI+RD+K+  SSEE+ S +
Sbjct: 690  LSRDEMEVNDHSDIVTLSESDITDHVAVKSVPPRRRTKSKIRIMRDNKLTCSSEELLSNS 749

Query: 352  GIAADKDEVKVEQLDGEEPAIHNKVSTPDCTEKSPTDPTGSEDSLARGSPMSEGSAAKPS 411
            G+    DEVKV+Q   EE  I  +VS P                              PS
Sbjct: 750  GMLL--DEVKVDQAVCEEREISTEVS-PKVI-----------------------FLDNPS 783

Query: 412  DCGFFESCQSEEAALP--DQINLLNVDQENPICSSVDTLVPYFINAKPSSGFFWHPYIHK 469
             C   E  +S+ A L   D IN       N + S + +++P     + SS F+ HPYI K
Sbjct: 784  GCTLSEKVESQPAVLQHGDSINA------NTVYSDMISVLPDLNKVQGSSSFYMHPYIRK 837

Query: 470  S-LQMQSGLL-----SGNKVHKSDEISRLEASSTASVCCNHQGRHSKCNDMSCKSDGVNL 523
              +Q+QSGLL      G +  +  E   LE SS AS CC+HQ  HS  ND +CK D VN 
Sbjct: 838  KFMQLQSGLLLRDNVCGAEGWRVGETCCLEPSSNASDCCDHQNTHSNRND-TCKFDEVNS 896

Query: 524  EQVFKARTRGVLELSPTDEVEGEIIYFQHRLLGNAFSRKRLADNLVCKAVKTLNQEIDVA 583
             Q+ KA+  GV ELSP DEVEGEI+YFQ RLLGNA +RKR  DNL+C+  K+L  EID  
Sbjct: 897  GQLIKAKRLGVHELSPADEVEGEIMYFQDRLLGNAIARKRFTDNLICEIAKSLPHEIDKT 956

Query: 584  RGRRWDAVLVNQYLCELREAKKQGRKERRHKEAQAVLAAATAAAAASSRISSFRKDSLEE 643
              +RWDAV VNQYL ELREAKKQGRKER+HKEAQAVLAAATAAAAASSRISSFRKD+ +E
Sbjct: 957  SAQRWDAVFVNQYLNELREAKKQGRKERKHKEAQAVLAAATAAAAASSRISSFRKDAYDE 1016

Query: 644  SASQENLLKLSSHNGRAAISSQVMSRAKETLSRVAVPRILSDKNSDSLQSVSDFSKEHPR 703
            S +QE    +      A ISSQ+M R KETLSRVAVPR  S+K SDS+QS S+FSKEHPR
Sbjct: 1017 STNQEVSTSV------AGISSQLMPRPKETLSRVAVPRNSSEKYSDSVQSGSEFSKEHPR 1070

Query: 704  SCDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELLSSRSSGAPSVN 763
            SCDICRRSET+LNPIL+CS CKVAVHLDCYR+ KESTGPWYCELCEELLSS+ S A S+N
Sbjct: 1071 SCDICRRSETVLNPILVCSSCKVAVHLDCYRSVKESTGPWYCELCEELLSSKCSAAASLN 1130

Query: 764  FWEKPYFVAECSLCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRGQVNPVAGMEAFPKG 823
            FWEKPYFVAEC LCGGTTGAFRKSA+ QWVHAFCAEWVFE TFRRGQVNPV GME   KG
Sbjct: 1131 FWEKPYFVAECGLCGGTTGAFRKSADNQWVHAFCAEWVFEPTFRRGQVNPVDGMETITKG 1190

Query: 824  IDVCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSLEQ 883
            ID+C ICRHKHG+CIKC+YG+CQTTFHP+CARSAGFY+NVK+  G  QHKAYCE+H LEQ
Sbjct: 1191 IDICFICRHKHGVCIKCSYGHCQTTFHPSCARSAGFYMNVKTLNGKLQHKAYCERHGLEQ 1250

Query: 884  KMKAETQKHGVEELKGIKQIRVELERLRLLCERIIKREKIKRELILCSHEILAFKRDHHA 943
            + KA+TQKHG EELK +KQIRVELERLRLLCERIIKREKIKR+L+LCSH ILA KRDH A
Sbjct: 1251 RAKADTQKHGAEELKSMKQIRVELERLRLLCERIIKREKIKRDLVLCSHSILACKRDHVA 1310

Query: 944  -ARLVHGRIPFFPPDVSSESATTSLKGHTDSFKSCSEAFQRSDDVTVDSAASVKNRIKVY 1002
             + LVH   PFFPPDVSSESATTSLKG+TD +KSCS+A QRSDDVTVDS  SVK+R+K  
Sbjct: 1311 RSMLVHS--PFFPPDVSSESATTSLKGNTDGYKSCSDAMQRSDDVTVDSTISVKHRVK-- 1366

Query: 1003 VPMDADQRTDDSSMSQNLYPRKPSERMQFSGKQIPHRPHL-SRSLANEEEWSSKARKSCG 1061
            V MD DQ+TDDSS SQ+L+ RKP ER+ F+GKQIPHR  L SR+  +  EWSS++RK   
Sbjct: 1367 VTMDTDQKTDDSSTSQHLFTRKPLERVSFAGKQIPHRVSLASRNALDAGEWSSQSRKRLE 1426

Query: 1062 TLEKEIVMTSDEASIKNRKLPKGFIFVPVNCLPKEKRINEEASSVEPVE 1110
            T EKE+VMTSD+AS+KN++LPKG+ ++PV+CLPKEK+++++A S EP+E
Sbjct: 1427 TFEKELVMTSDQASMKNQQLPKGYFYIPVDCLPKEKQVDQDACSGEPLE 1475

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224084824|ref|XP_002307412.1| predicted protein [Populus trichocarpa] gi|222856861|gb|EEE94408.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356518511|ref|XP_003527922.1| PREDICTED: uncharacterized protein LOC100777481 [Glycine max] Back     alignment and taxonomy information
>gi|449445230|ref|XP_004140376.1| PREDICTED: uncharacterized protein LOC101212864 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449479909|ref|XP_004155743.1| PREDICTED: uncharacterized LOC101212864 [Cucumis sativus] Back     alignment and taxonomy information
>gi|357461689|ref|XP_003601126.1| Protein Jade-1 [Medicago truncatula] gi|355490174|gb|AES71377.1| Protein Jade-1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|302141882|emb|CBI19085.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297839639|ref|XP_002887701.1| PHD finger family protein [Arabidopsis lyrata subsp. lyrata] gi|297333542|gb|EFH63960.1| PHD finger family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|224063154|ref|XP_002301017.1| predicted protein [Populus trichocarpa] gi|222842743|gb|EEE80290.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|12323292|gb|AAG51624.1|AC012193_6 putative phorbol ester / diacylglycerol binding protein; 61157-67783 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1113
CGD|CAL0003263 759 orf19.5910 [Candida albicans ( 0.147 0.216 0.328 1.6e-17
SGD|S000006235748 NTO1 "Subunit of the NuA3 hist 0.192 0.286 0.296 2.6e-17
TAIR|locus:20659231062 ATX1 "homologue of trithorax" 0.117 0.123 0.34 9.7e-17
UNIPROTKB|F1SQG0 1214 BRPF1 "Uncharacterized protein 0.193 0.177 0.287 1.9e-16
RGD|1584828 1246 Brpf1 "bromodomain and PHD fin 0.193 0.172 0.287 2e-16
UNIPROTKB|I3LMI5 1248 BRPF1 "Uncharacterized protein 0.193 0.172 0.287 2e-16
UNIPROTKB|E1BPS1 1213 BRPF1 "Uncharacterized protein 0.193 0.177 0.284 4e-16
UNIPROTKB|P55201 1214 BRPF1 "Peregrin" [Homo sapiens 0.193 0.177 0.284 4e-16
UNIPROTKB|E2RH23 1220 BRPF1 "Uncharacterized protein 0.193 0.176 0.284 4.1e-16
UNIPROTKB|F1P2H3 1138 BRPF1 "Uncharacterized protein 0.193 0.188 0.287 1e-15
CGD|CAL0003263 orf19.5910 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
 Score = 251 (93.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 62/189 (32%), Positives = 85/189 (44%)

Query:   701 HPRSCDICRRSETI-LNPILICSGCKVAVHLDCYRNAKESTGPWYXXXXXXXXXXXXXGA 759
             + + C IC  S+    N I+ C GC +AVH +CY  A    G W                
Sbjct:   222 YDQKCAICNDSDCDNANAIVFCDGCDIAVHQECYGVAFIPEGQWLCRKCM---------- 271

Query:   760 PSVNFWEKPYFVAECSLCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRG-QVNPVAGME 818
               +N         EC  C  TTGAF++  N  W H  C  W+ E  F     + P+ GME
Sbjct:   272 --IN----KNRTTECVFCPSTTGAFKQLDNSLWSHVICGLWINELYFANPIYMEPIEGME 325

Query:   819 AFPKGID--VCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLN----VKSTGGN-FQ 871
               PK      C IC+ + G CI+C   +C   +H TCA+ AG Y++    +K    N   
Sbjct:   326 GIPKSRWKLTCYICKQRVGACIQCCNRSCFQAYHVTCAKRAGLYMSMTQGIKGAISNKLT 385

Query:   872 HKAYCEKHS 880
              K+YCE+HS
Sbjct:   386 LKSYCERHS 394
GO:0033100 "NuA3 histone acetyltransferase complex" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0004402 "histone acetyltransferase activity" evidence=IEA
GO:0035064 "methylated histone residue binding" evidence=IEA
GO:0016573 "histone acetylation" evidence=IEA
SGD|S000006235 NTO1 "Subunit of the NuA3 histone acetyltransferase complex" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
TAIR|locus:2065923 ATX1 "homologue of trithorax" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1SQG0 BRPF1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1584828 Brpf1 "bromodomain and PHD finger containing, 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|I3LMI5 BRPF1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1BPS1 BRPF1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P55201 BRPF1 "Peregrin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RH23 BRPF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1P2H3 BRPF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1113
pfam13832109 pfam13832, zf-HC5HC2H_2, PHD-zinc-finger like doma 2e-41
COG5141669 COG5141, COG5141, PHD zinc finger-containing prote 8e-27
pfam1377189 pfam13771, zf-HC5HC2H, PHD-like zinc-binding domai 7e-25
pfam13832109 pfam13832, zf-HC5HC2H_2, PHD-zinc-finger like doma 9e-23
pfam1377189 pfam13771, zf-HC5HC2H, PHD-like zinc-binding domai 1e-14
COG5141669 COG5141, COG5141, PHD zinc finger-containing prote 1e-12
pfam1383133 pfam13831, PHD_2, PHD-finger 1e-10
pfam0062851 pfam00628, PHD, PHD-finger 1e-04
smart0024947 smart00249, PHD, PHD zinc finger 1e-04
>gnl|CDD|206003 pfam13832, zf-HC5HC2H_2, PHD-zinc-finger like domain Back     alignment and domain information 
 Score =  147 bits (372), Expect = 2e-41
 Identities = 48/110 (43%), Positives = 64/110 (58%), Gaps = 3/110 (2%)

Query: 772 AECSLCGGTTGAFRKSANGQWVHAFCAEWVFESTFRRGQVNPVAGMEAFPKGI--DVCCI 829
           AEC LC    GA +K+ +G+WVH  CA +V E  F  G       +   PK      CC 
Sbjct: 1   AECCLCPLRGGALKKTTDGRWVHVLCAIFVPEVRFGNGATMEPIDVSRIPKERWKLKCCF 60

Query: 830 CRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKH 879
           C+ + G CI+C+YG CQT+FH TCAR+AG Y+ ++    N Q  AYC+KH
Sbjct: 61  CKKRSGACIQCSYGRCQTSFHVTCARAAGVYMEIEDW-PNLQVIAYCQKH 109

Length = 109
>gnl|CDD|227470 COG5141, COG5141, PHD zinc finger-containing protein [General function prediction only] Back     alignment and domain information
>gnl|CDD|222368 pfam13771, zf-HC5HC2H, PHD-like zinc-binding domain Back     alignment and domain information
>gnl|CDD|206003 pfam13832, zf-HC5HC2H_2, PHD-zinc-finger like domain Back     alignment and domain information
>gnl|CDD|222368 pfam13771, zf-HC5HC2H, PHD-like zinc-binding domain Back     alignment and domain information
>gnl|CDD|227470 COG5141, COG5141, PHD zinc finger-containing protein [General function prediction only] Back     alignment and domain information
>gnl|CDD|222406 pfam13831, PHD_2, PHD-finger Back     alignment and domain information
>gnl|CDD|201356 pfam00628, PHD, PHD-finger Back     alignment and domain information
>gnl|CDD|214584 smart00249, PHD, PHD zinc finger Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1113
KOG0954893 consensus PHD finger protein [General function pre 100.0
KOG0954 893 consensus PHD finger protein [General function pre 100.0
KOG0956 900 consensus PHD finger protein AF10 [General functio 100.0
COG5141669 PHD zinc finger-containing protein [General functi 100.0
KOG0955 1051 consensus PHD finger protein BR140/LIN-49 [General 100.0
KOG0957 707 consensus PHD finger protein [General function pre 99.97
PF13832110 zf-HC5HC2H_2: PHD-zinc-finger like domain 99.9
KOG0956900 consensus PHD finger protein AF10 [General functio 99.88
PF13832110 zf-HC5HC2H_2: PHD-zinc-finger like domain 99.88
COG5141669 PHD zinc finger-containing protein [General functi 99.86
KOG09551051 consensus PHD finger protein BR140/LIN-49 [General 99.83
PF1377190 zf-HC5HC2H: PHD-like zinc-binding domain 99.71
KOG0957707 consensus PHD finger protein [General function pre 99.7
PF1377190 zf-HC5HC2H: PHD-like zinc-binding domain 99.49
KOG10801005 consensus Histone H3 (Lys4) methyltransferase comp 99.02
PF1383136 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A. 98.92
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 97.66
KOG10801005 consensus Histone H3 (Lys4) methyltransferase comp 97.63
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 97.58
KOG1244336 consensus Predicted transcription factor Requiem/N 97.16
KOG1512381 consensus PHD Zn-finger protein [General function 96.99
KOG1084375 consensus Transcription factor TCF20 [Transcriptio 96.87
KOG4323464 consensus Polycomb-like PHD Zn-finger protein [Gen 96.76
KOG4323464 consensus Polycomb-like PHD Zn-finger protein [Gen 96.63
KOG1084375 consensus Transcription factor TCF20 [Transcriptio 96.51
PF15446175 zf-PHD-like: PHD/FYVE-zinc-finger like domain 96.35
KOG0825 1134 consensus PHD Zn-finger protein [General function 95.68
KOG4299613 consensus PHD Zn-finger protein [General function 95.2
COG5034271 TNG2 Chromatin remodeling protein, contains PhD zi 95.05
KOG1973274 consensus Chromatin remodeling protein, contains P 93.99
PF1444654 Prok-RING_1: Prokaryotic RING finger family 1 92.27
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 91.52
KOG0383 696 consensus Predicted helicase [General function pre 90.99
KOG4443 694 consensus Putative transcription factor HALR/MLL3, 90.63
TIGR0284480 spore_III_D sporulation transcriptional regulator 87.56
KOG1512381 consensus PHD Zn-finger protein [General function 84.85
PF0901269 FeoC: FeoC like transcriptional regulator; InterPr 83.09
PF10198131 Ada3: Histone acetyltransferases subunit 3; InterP 83.02
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 82.23
KOG1044 670 consensus Actin-binding LIM Zn-finger protein Lima 80.76
>KOG0954 consensus PHD finger protein [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=7.3e-43  Score=404.86  Aligned_cols=516  Identities=30%  Similarity=0.400  Sum_probs=320.3

Q ss_pred             CCCCCCCCcceecCCCCCcHhhHhhcccCceeeccCCcccccccccCchhhcccccccccccccCceeeCCCCCCCcccc
Q 001260            3 SLPKAGGALKPVNGGSMEFAHLFCSLLMPEVYIEDTMKVEPLMNVGGIKETRMKLVCNICRVKCGACVRCSHGTCRTSFH   82 (1113)
Q Consensus         3 lCP~kgGALK~T~~G~~~WvHv~CALwiPEv~f~~~~~~epV~~I~~I~~~R~~LkC~iC~~k~GAcIqCs~~~C~~sFH   82 (1113)
                      |||++|||||+|..| .+|||+.||||||||+|+++..|+||++|+.|+..||.|.|.+|+.+.||||||+.+.|.++||
T Consensus       328 LCPkkGGamK~~~sg-T~wAHvsCALwIPEVsie~~ekmePItkfs~IpesRwslvC~LCk~k~GACIqCs~k~C~t~fH  406 (893)
T KOG0954|consen  328 LCPKKGGAMKPTKSG-TKWAHVSCALWIPEVSIECPEKMEPITKFSHIPESRWSLVCNLCKVKSGACIQCSNKTCRTAFH  406 (893)
T ss_pred             eccccCCcccccCCC-CeeeEeeeeeccceeeccCHhhcCcccccCCCcHHHHHHHHHHhcccCcceEEecccchhhhcc
Confidence            799999999999987 5999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcCceEEEccccCCcceeeeeccCCCCCCCCCCCCCCCCC---CCCCCCCccccccccccccccCccceeeeecc
Q 001260           83 PICAREARHRLEVWGKYGCNNVELRAFCAKHSDIQDNSSTPRTGD---PCSAIGSESCVSNNLHETLSMSKLHKLKFSCK  159 (1113)
Q Consensus        83 vtCA~~aG~~~e~~~~~g~~~~~~~~fC~~Hr~~~~~~~~~~~~~---~~~~d~s~~~~~~~~~~~L~~~~l~Q~q~~~~  159 (1113)
                      ++||+.+|..|.++... .+.+.|.+||.+|+.-+...+.-+.++   +.-..+ ++..........+.+.++++...  
T Consensus       407 v~CA~~aG~~~~~~~~~-~D~v~~~s~c~khs~~~~~~s~g~~~e~p~p~~~~p-~~~~~e~~~~s~r~q~l~~~e~e--  482 (893)
T KOG0954|consen  407 VTCAFEAGLEMKTILKE-NDEVKFKSYCSKHSDHREGKSLGNEAESPHPRCHLP-EQSVGEGHRSSDRAQKLQELEGE--  482 (893)
T ss_pred             chhhhhcCCeeeeeecc-CCchhheeecccccccccccccccccCCCCccccCh-hhhhhhhhhhhHHHHHHhhcchh--
Confidence            99999999999999754 677899999999998875322211111   000000 00123344444555555554422  


Q ss_pred             CCCeeeeeeecCCCCCCCCCCccccccCCCccccccccccccCCCCCCCCCCCCCCCCCcchHHHHHHHhhhCCcchhhh
Q 001260          160 NGDKIGVHTETSDANSDRSTDSEVTGFSDSRLISVPTSECTNAGKPDRSEFEDVNPSDALNFTLILKKLIDRGKVNVKDI  239 (1113)
Q Consensus       160 ~Gd~~~~~~~t~~~~s~~~~~~e~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkkli~~gkv~~~~~  239 (1113)
                                 .|.-.++.-.-|..++|.-.+++.  -.=+. .+..+-....-.+..+.+|.+++||++|.|||+++++
T Consensus       483 -----------f~~~v~~~diae~l~~~e~~vs~i--ynywk-lkrks~~n~~lippk~d~~~~i~kk~~~~~kv~~kl~  548 (893)
T KOG0954|consen  483 -----------FYDIVRNEDIAELLSMPEFAVSAI--YNYWK-LKRKSRFNKELIPPKSDEVGLIAKKLEDLGKVRVKLV  548 (893)
T ss_pred             -----------HhhhhhHHHHHHHhcCchHHHHHH--HHHHH-HhhhccCCCcCCCCcchhccchhhHHHHhhhhhhHHH
Confidence                       112222211233344555444441  00011 4445555568899999999999999999999999999


Q ss_pred             hhhhcCChhhhhhccccccccc-----------hhhHHHHHHhhhcccccccccceeeccccccccccc-------cccC
Q 001260          240 ASDIGISPDLLKTTLADGTFAS-----------DLQCKLVKWLSNHAYLGGLLKNVKLKIKSSISSKAD-------IKNS  301 (1113)
Q Consensus       240 a~~~g~s~~~~~a~l~~~~~~~-----------~~~~k~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~  301 (1113)
                      |..+   +|.+.+.+-..+.+-           +-|.--..+|-.|.||++.++...++.+.++.+..-       +.-.
T Consensus       549 ahlr---qdlerv~~~~~~~trrekas~s~~ki~eq~f~~ql~l~~q~~~~~~~~~n~~~n~~f~~~~r~tl~~k~~~s~  625 (893)
T KOG0954|consen  549 AHLR---QDLERVRNLCYTKTRREKASNSYAKIDEQLFPDQLLLQHQHMGSSDKGKNLKRNTTFYSERRATLCTKGIVSL  625 (893)
T ss_pred             HHHH---HHHHHhhcccchhcccchhhhhHHHHHhHHHHHHHHHHHHhhcccccchhhhhhccccCCcchhHhhhccccC
Confidence            9988   777776644222221           112222234778999999999988887665544322       2223


Q ss_pred             CCCCcccc---ccCCCCccccccc--------------------CCCCcccccceecccCcccccccceec-CCCccccc
Q 001260          302 DSDGLMVS---ESDVADPVAVKSV--------------------PPRRRTKSSIRILRDDKMVSSSEEIFS-GNGIAADK  357 (1113)
Q Consensus       302 ~~~~~~~~---~~~~~~~~~~~~v--------------------p~~~rt~~~~~il~dn~~~cs~e~~~~-~~g~~~~~  357 (1113)
                      |+++...+   .--+..|.+++.+                    +.----++|.|||+....+=+-+---+ -|-+..+ 
T Consensus       626 ~~d~~~~a~q~lq~il~p~~~~~~~~i~n~~r~~~t~n~rkns~~~v~ak~~nnrl~~s~Shsp~~~h~~sp~~~t~s~-  704 (893)
T KOG0954|consen  626 DSDILDPAVQKLQSILRPHEINICNNITNNTRCTLTENCRKNSIVVVPAKANNNRLLKSGSHSPAPDHSPSPKNSTVSD-  704 (893)
T ss_pred             CccccCHHHHHhhcccCcchhhhhhccccCcccccChhhccCcceeeecccccCccccCCCcCCccccCCCcCCCccch-
Confidence            34443221   1112222222111                    000011222222222221111100000 0000000 


Q ss_pred             chhhhcccCCCCCccCccccCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCcccccccccccchhhccc---c
Q 001260          358 DEVKVEQLDGEEPAIHNKVSTPDCTEKSPTDPTGSEDSLARGSPMSEGSAAKPSDCGFFESCQSEEAALPDQINLL---N  434 (1113)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  434 (1113)
                              ++.  .-++-|..|+.       -...    ..++.++.                     .+-+.+|-   |
T Consensus       705 --------~~~--h~gk~g~~pr~-------d~~s----~sasss~n---------------------~ksq~~skirsn  742 (893)
T KOG0954|consen  705 --------QKV--HHGKSGVIPRD-------DHGS----QSASSSSN---------------------VKSQNASKIRSN  742 (893)
T ss_pred             --------hhc--CCccCCCCccc-------cccc----cccccccC---------------------cccccccccccC
Confidence                    000  00111111111       1111    11111111                     11111111   3


Q ss_pred             CCCCCCCCCCCCCcccccccCCCCCccccchhhhhh-hccccCcccCCcccCcccchhhccccCCCccccccCccCccCC
Q 001260          435 VDQENPICSSVDTLVPYFINAKPSSGFFWHPYIHKS-LQMQSGLLSGNKVHKSDEISRLEASSTASVCCNHQGRHSKCND  513 (1113)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~hp~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  513 (1113)
                      +.++--.-+...+.++.+++.+.+.+|..|-||++. ..+.-..++  ....+..+.+|..+..-+.=.-..++++..  
T Consensus       743 ~s~~s~n~ni~~~~sss~~~~~~~p~fsph~~~~~s~s~s~~e~~s--ks~~~s~~~~~kq~y~~~~~~~~~~~q~~g--  818 (893)
T KOG0954|consen  743 SSQNSGNGNIPNPISSSLFNQEAYPGFSPHRYIHKSLSESGKEQTS--KSSTDSDVARMKQTYTHLAGSEEGNKQLQG--  818 (893)
T ss_pred             cccccCCCcCCCCcchhhhccccCCCCCcchhhhhhhhhhcccccc--cccccCCcchhhheecccccccchhhHHHH--
Confidence            333333333334677799999999999999999999 554443333  233444444444111111111122222222  


Q ss_pred             CcccCCcccHHHHHHhhhccccccCCCcchhhHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhHHHHhhhhcchhHHHH
Q 001260          514 MSCKSDGVNLEQVFKARTRGVLELSPTDEVEGEIIYFQHRLLGNAFSRKRLADNLVCKAVKTLNQEIDVARGRRWDAVLV  593 (1113)
Q Consensus       514 ~~~~~~~~~~~q~~~~~~~~~~~~~p~de~e~E~~~~q~~ll~~~~~~~~~~~~lv~eV~k~l~~e~~~~~~r~~d~~~~  593 (1113)
                            ...+-|+++++.+|+++.+|.|+.++|.+|.|..+++.+..+++..+++..+++++++.|++....|+||..++
T Consensus       819 ------~e~~~~~s~~~p~~~~d~s~~D~e~~~~~~~q~~~~g~~r~rkqssd~~n~~~asr~~~~~~~~~g~~~~~s~~  892 (893)
T KOG0954|consen  819 ------AETFLQLSKARPLGILDLSPEDEEEGELLYYQLQLLGTARSRKQSSDNLNYEVASRLPLEIDEQHGRRWDDSLV  892 (893)
T ss_pred             ------HHHHHHhhccCCcccccCCCCchhhhhHHhhhhccccceecccccccCcChhhhccCCCccccccCcCcchhhc
Confidence                  36789999999999999999999999999999999999999999999999999999999999999999998765

>KOG0954 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>KOG0956 consensus PHD finger protein AF10 [General function prediction only] Back     alignment and domain information
>COG5141 PHD zinc finger-containing protein [General function prediction only] Back     alignment and domain information
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] Back     alignment and domain information
>KOG0957 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain Back     alignment and domain information
>KOG0956 consensus PHD finger protein AF10 [General function prediction only] Back     alignment and domain information
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain Back     alignment and domain information
>COG5141 PHD zinc finger-containing protein [General function prediction only] Back     alignment and domain information
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] Back     alignment and domain information
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain Back     alignment and domain information
>KOG0957 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain Back     alignment and domain information
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A Back     alignment and domain information
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] Back     alignment and domain information
>KOG1512 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1084 consensus Transcription factor TCF20 [Transcription] Back     alignment and domain information
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1084 consensus Transcription factor TCF20 [Transcription] Back     alignment and domain information
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain Back     alignment and domain information
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG4299 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] Back     alignment and domain information
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1 Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>KOG0383 consensus Predicted helicase [General function prediction only] Back     alignment and domain information
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only] Back     alignment and domain information
>TIGR02844 spore_III_D sporulation transcriptional regulator SpoIIID Back     alignment and domain information
>KOG1512 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif Back     alignment and domain information
>PF10198 Ada3: Histone acetyltransferases subunit 3; InterPro: IPR019340 This entry is found in Ada3 and homologous proteins which function as part of histone acetyltransferase complexes [] Back     alignment and domain information
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG1044 consensus Actin-binding LIM Zn-finger protein Limatin involved in axon guidance [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1113
2lq6_A87 Solution Structure Of Brd1 Phd2 Finger Length = 87 8e-05
>pdb|2LQ6|A Chain A, Solution Structure Of Brd1 Phd2 Finger Length = 87 Back     alignment and structure 
Iteration: 1

 Score = 46.6 bits (109), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 9/63 (14%)
Query: 827 CCICRHKH-GICIKCNYGNCQTTFHPTCARSAGFYLNVKS----TGG----NFQHKAYCE 877
           C +C+ K  G  I+C+  NC T FH TCA+ AG Y+ ++     TGG    + +  AYC+
Sbjct: 20  CYLCKQKGVGASIQCHKANCYTAFHVTCAQKAGLYMKMEPVKELTGGGTTFSVRKTAYCD 79
Query: 878 KHS 880
            H+
Sbjct: 80  VHT 82

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1113
2ku3_A71 Bromodomain-containing protein 1; PHD finger, chro 5e-10
2l43_A88 N-teminal domain from histone H3.3, linker, PHD1 f 4e-09
1wev_A88 Riken cDNA 1110020M19; structural genomics, PHD do 3e-08
2yt5_A66 Metal-response element-binding transcription facto 3e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 6e-04
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Length = 71 Back     alignment and structure
 Score = 55.7 bits (134), Expect = 5e-10
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 705 CDICRRSETI-LNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEE 750
           C IC   E+   N IL C  C +AVH +CY       G W C  C +
Sbjct: 19  CSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Length = 88 Back     alignment and structure
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Length = 88 Back     alignment and structure
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Length = 66 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Length = 114 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1113
2lq6_A87 Bromodomain-containing protein 1; PHD finger, meta 99.56
2lq6_A87 Bromodomain-containing protein 1; PHD finger, meta 99.16
2ku3_A71 Bromodomain-containing protein 1; PHD finger, chro 98.95
2l43_A88 N-teminal domain from histone H3.3, linker, PHD1 f 98.82
1wev_A88 Riken cDNA 1110020M19; structural genomics, PHD do 98.63
2yt5_A66 Metal-response element-binding transcription facto 98.61
4gne_A107 Histone-lysine N-methyltransferase NSD3; zinc fing 98.47
1xwh_A66 Autoimmune regulator; PHD domain, Zn binding domai 98.36
1f62_A51 Transcription factor WSTF; Zn-finger; NMR {Homo sa 98.29
2yql_A56 PHD finger protein 21A; PHD domain, structural gen 98.29
1mm2_A61 MI2-beta; PHD, zinc finger, protein scaffold, DNA 98.26
2l5u_A61 Chromodomain-helicase-DNA-binding protein 4; CHD4, 98.21
2e6r_A92 Jumonji/ARID domain-containing protein 1D; PHD dom 98.18
2puy_A60 PHD finger protein 21A; PHD finger, histone CODE, 98.18
2lri_C66 Autoimmune regulator; Zn binding protein domain, a 98.15
1fp0_A88 KAP-1 corepressor; PHD domain, C3HC4 type zinc bin 98.13
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 98.11
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 98.08
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 98.0
2e6s_A77 E3 ubiquitin-protein ligase UHRF2; PHD domain, str 97.97
3asl_A70 E3 ubiquitin-protein ligase UHRF1; histone reader 97.87
1wen_A71 Inhibitor of growth family, member 4; ING1-like pr 97.84
3shb_A77 E3 ubiquitin-protein ligase UHRF1; unmodified hist 97.8
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 97.75
3o36_A184 Transcription intermediary factor 1-alpha; TRIM24, 97.71
2jmi_A90 Protein YNG1, ING1 homolog 1; PHD, histone, recogn 97.69
2k16_A75 Transcription initiation factor TFIID subunit 3; p 97.68
2vnf_A60 ING 4, P29ING4, inhibitor of growth protein 4; ace 97.68
3u5n_A207 E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b 97.65
3c6w_A59 P28ING5, inhibitor of growth protein 5; chromatin, 97.63
1weu_A91 Inhibitor of growth family, member 4; structural g 97.6
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 97.6
2g6q_A62 Inhibitor of growth protein 2; protein-peptide com 97.51
2ro1_A189 Transcription intermediary factor 1-beta; KAP, TIF 97.42
3ask_A226 E3 ubiquitin-protein ligase UHRF1; histone reader 97.4
2lv9_A98 Histone-lysine N-methyltransferase MLL5; zinc fing 97.4
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 97.28
1we9_A64 PHD finger family protein; structural genomics, PH 97.21
1x4i_A70 Inhibitor of growth protein 3; structural genomics 97.15
1wee_A72 PHD finger family protein; structural genomics, PH 96.89
3o70_A68 PHD finger protein 13; PHF13, structural genomics 96.81
1wew_A78 DNA-binding family protein; structural genomics, P 96.77
2vpb_A65 Hpygo1, pygopus homolog 1; gene regulation, WNT si 96.76
2rsd_A68 E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant 96.65
1wep_A79 PHF8; structural genomics, PHD domain, riken struc 96.57
1wem_A76 Death associated transcription factor 1; structura 96.56
2kgg_A52 Histone demethylase jarid1A; PHD finger, histone m 96.28
2ri7_A174 Nucleosome-remodeling factor subunit BPTF; zinc fi 96.28
2xb1_A105 Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; 96.22
3o7a_A52 PHD finger protein 13 variant; PHF13, zinc finger, 95.72
2lbm_A142 Transcriptional regulator ATRX; metal binding prot 95.57
3kqi_A75 GRC5, PHD finger protein 2; metal-binding, zinc-fi 95.18
3ql9_A129 Transcriptional regulator ATRX; zinc finger, trans 94.35
3kv5_D488 JMJC domain-containing histone demethylation prote 93.33
3lqh_A183 Histone-lysine N-methyltransferase MLL; PHD finger 92.89
3kv4_A447 PHD finger protein 8; epigenetics, histone CODE, c 89.49
1wil_A89 KIAA1045 protein; ring finger domain, structural g 88.84
1xn7_A78 Hypothetical protein YHGG; alpha+beta, GFT structu 86.07
1wew_A78 DNA-binding family protein; structural genomics, P 86.04
1we9_A64 PHD finger family protein; structural genomics, PH 84.98
2k02_A87 Ferrous iron transport protein C; FEOC, iron-sulfu 84.67
1wem_A76 Death associated transcription factor 1; structura 84.39
1weu_A91 Inhibitor of growth family, member 4; structural g 84.29
1wep_A79 PHF8; structural genomics, PHD domain, riken struc 82.05
4gne_A107 Histone-lysine N-methyltransferase NSD3; zinc fing 81.54
3pur_A528 Lysine-specific demethylase 7 homolog; oxidoreduct 81.13
1wen_A71 Inhibitor of growth family, member 4; ING1-like pr 80.57
4bbq_A117 Lysine-specific demethylase 2A; oxidoreductase, ub 80.52
3o70_A68 PHD finger protein 13; PHF13, structural genomics 80.49
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
Probab=99.56  E-value=1.5e-15  Score=140.03  Aligned_cols=70  Identities=30%  Similarity=0.566  Sum_probs=59.4

Q ss_pred             cCchhhcccccccccccc-cCceeeCCCCCCCcccchhhhhhcCceEEEcccc------CCcceeeeeccCCCCCCC
Q 001260           48 GGIKETRMKLVCNICRVK-CGACVRCSHGTCRTSFHPICAREARHRLEVWGKY------GCNNVELRAFCAKHSDIQ  117 (1113)
Q Consensus        48 ~~I~~~R~~LkC~iC~~k-~GAcIqCs~~~C~~sFHvtCA~~aG~~~e~~~~~------g~~~~~~~~fC~~Hr~~~  117 (1113)
                      -+||++||+|+|+||+++ .||||||+.++|.++|||+||+.+|++|++....      ....+.+.+||++|+|..
T Consensus         9 ~NIp~~R~~l~C~iC~~~~~GAciqC~~~~C~~~fHv~CA~~aGl~~~~~~~~~~~~~~~~~~v~~~~yC~~HsPpg   85 (87)
T 2lq6_A            9 MNIPPARWKLTCYLCKQKGVGASIQCHKANCYTAFHVTCAQKAGLYMKMEPVKELTGGGTTFSVRKTAYCDVHTPPG   85 (87)
T ss_dssp             CCCCCCCCCCCBTTTTBCCSSCEEECSCTTTCCEEEHHHHHHHTCCEEEEEEEECTTTSCEEEEEEEECCGGGSSSS
T ss_pred             cCCChHHhcCCCcCCCCCCCcEeEecCCCCCCCcCcHHHHHHCCCceEeecccccccCCccccceECeECcCCCCcC
Confidence            368999999999999987 5999999999999999999999999999875311      122356889999999865
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Back     alignment and structure
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Back     alignment and structure
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Back     alignment and structure
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A* Back     alignment and structure
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Back     alignment and structure
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Back     alignment and structure
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Back     alignment and structure
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens} Back     alignment and structure
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Back     alignment and structure
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B Back     alignment and structure
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A Back     alignment and structure
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Back     alignment and structure
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Back     alignment and structure
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Back     alignment and structure
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* Back     alignment and structure
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Back     alignment and structure
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* Back     alignment and structure
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Back     alignment and structure
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} Back     alignment and structure
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Back     alignment and structure
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Back     alignment and structure
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens} Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Back     alignment and structure
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A* Back     alignment and structure
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} Back     alignment and structure
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Back     alignment and structure
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Back     alignment and structure
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Back     alignment and structure
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A Back     alignment and structure
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Back     alignment and structure
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Back     alignment and structure
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Back     alignment and structure
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3 Back     alignment and structure
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62 Back     alignment and structure
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp} Back     alignment and structure
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A* Back     alignment and structure
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Back     alignment and structure
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A Back     alignment and structure
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens} Back     alignment and structure
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1113
d1weva_88 g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu 5e-06
d1f62a_51 g.50.1.2 (A:) Williams-Beuren syndrome transcripti 1e-04
d1we9a_64 g.50.1.2 (A:) PHD finger protein At5g26210 {Thale 1e-04
d1mm2a_61 g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens 4e-04
d1weea_72 g.50.1.2 (A:) PHD finger protein At1g33420 {Thale 7e-04
d1fp0a170 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF- 0.001
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 Back     information, alignment and structure

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 22
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.7 bits (102), Expect = 5e-06
 Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 7/74 (9%)

Query: 695 SDFSKEHPRSCDICRRSETI-LNPILICSGCKVAVHLDCYR------NAKESTGPWYCEL 747
            DF+ E   +C +CR+      N ++ C  C    H DC++         +    WYC  
Sbjct: 9   DDFAMEMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCAR 68

Query: 748 CEELLSSRSSGAPS 761
           C   +   +     
Sbjct: 69  CTRQMKRMAQKNQK 82
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51 Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Length = 70 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1113
d1weva_88 PHD finger protein 22 {Mouse (Mus musculus) [TaxId 98.24
d1f62a_51 Williams-Beuren syndrome transcription factor, WST 98.03
d1fp0a170 Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo 97.93
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 97.8
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 97.79
d1wesa_71 PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu 97.7
d2pnxa151 Inhibitor of growth protein 4, Ing4 {Homo sapiens 97.4
d1weea_72 PHD finger protein At1g33420 {Thale cress (Arabido 97.37
d1wema_76 Death associated transcription factor 1, Datf1 (DI 97.32
d1wepa_79 PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 97.04
d1wewa_78 Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop 96.34
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 85.18
d1wema_76 Death associated transcription factor 1, Datf1 (DI 85.14
d1f62a_51 Williams-Beuren syndrome transcription factor, WST 82.8
d1weva_88 PHD finger protein 22 {Mouse (Mus musculus) [TaxId 80.22
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 22
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.24  E-value=1e-07  Score=85.16  Aligned_cols=57  Identities=26%  Similarity=0.666  Sum_probs=45.9

Q ss_pred             CCCCCCCcCcccCCCCC-CCCCeEEccccCcccccccccCc------ccCCCcccccccccccc
Q 001260          697 FSKEHPRSCDICRRSET-ILNPILICSGCKVAVHLDCYRNA------KESTGPWYCELCEELLS  753 (1113)
Q Consensus       697 ~~ke~~~~CsVC~~~E~-~~N~IV~Cd~C~laVHq~CYGi~------~ipeg~WlCd~C~~~~~  753 (1113)
                      +..+..++|.||+.... ..+.||+|++|...||+.|++++      .++++.|+|..|.....
T Consensus        11 ~~~~~~~~C~iC~~~~~~~~~~~v~Cd~C~~~~H~~C~~p~~~~~~~~~~~~~W~C~~C~~~~~   74 (88)
T d1weva_          11 FAMEMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK   74 (88)
T ss_dssp             CHHHHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred             ccCcCcCCccCCCCccCCCCCeEEEcCCCCCccccccCCCcccccccccCCCeEECcccCchHh
Confidence            44556788999997654 46889999999999999999964      35678999999986543
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure