Citrus Sinensis ID: 001261
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1112 | 2.2.26 [Sep-21-2011] | |||||||
| Q8H0U8 | 1166 | DEAD-box ATP-dependent RN | yes | no | 0.857 | 0.817 | 0.754 | 0.0 | |
| Q9SF41 | 989 | DEAD-box ATP-dependent RN | no | no | 0.877 | 0.986 | 0.652 | 0.0 | |
| Q0J7Y8 | 947 | DEAD-box ATP-dependent RN | yes | no | 0.768 | 0.902 | 0.650 | 0.0 | |
| Q4TVV3 | 1018 | Probable ATP-dependent RN | yes | no | 0.768 | 0.839 | 0.445 | 0.0 | |
| Q569Z5 | 1032 | Probable ATP-dependent RN | yes | no | 0.758 | 0.816 | 0.453 | 0.0 | |
| Q62780 | 1032 | Probable ATP-dependent RN | yes | no | 0.749 | 0.807 | 0.451 | 0.0 | |
| Q7L014 | 1031 | Probable ATP-dependent RN | yes | no | 0.758 | 0.818 | 0.451 | 0.0 | |
| Q5R6D8 | 1032 | Probable ATP-dependent RN | yes | no | 0.758 | 0.817 | 0.451 | 0.0 | |
| Q1DHB2 | 1197 | Pre-mRNA-processing ATP-d | N/A | no | 0.678 | 0.630 | 0.474 | 0.0 | |
| Q553B1 | 1151 | ATP-dependent RNA helicas | yes | no | 0.608 | 0.588 | 0.498 | 0.0 |
| >sp|Q8H0U8|RH42_ARATH DEAD-box ATP-dependent RNA helicase 42 OS=Arabidopsis thaliana GN=RH42 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 1412 bits (3656), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 745/988 (75%), Positives = 848/988 (85%), Gaps = 35/988 (3%)
Query: 134 VESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVEDDSDKKE 193
V +++SD+D RD KRRR+ + KE+ RE+S+ RS+RH D SP+ K VED+ +KKE
Sbjct: 205 VGNEESDDDVKRDLKRRRKEGGERKEKEREKSVGRSSRHED----SPKRKSVEDNGEKKE 260
Query: 194 KKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGDANVEEPKAGRNWTL 253
KKTREEELEDEQ+KLDEE+EKRRRRVQEWQELKRKKEE+E E++GDA+ EPKAG+ WTL
Sbjct: 261 KKTREEELEDEQKKLDEEVEKRRRRVQEWQELKRKKEEAESESKGDADGNEPKAGKAWTL 320
Query: 254 DREDSDDEEVPQTGKSETDMDADEEPKPSENQVGDAMLVDSDGGSAAPALQI---GAAED 310
+ E SDDEE KSET+MD DEE KP + GDA +VD + +AA + GA ++
Sbjct: 321 EGE-SDDEEGHPEEKSETEMDVDEETKPEND--GDAKMVDLENETAATVSESGGDGAVDE 377
Query: 311 EDIDPLDAFMNSMVLPEVEKLKNTV-EPSFTDGNNVESKKMDRKGDRRSNGEQPKKSSNK 369
E+IDPLDAFMN+MVLPEVEK N P+ DG +D K + + +G++PKK NK
Sbjct: 378 EEIDPLDAFMNTMVLPEVEKFCNGAPPPAVNDGT------LDSKMNGKESGDRPKKGFNK 431
Query: 370 SLGRIIPGEDSDSDYGDLENDEKPLEDEDDDEFMKRVKKTKAEKLSIVDHSKIDYQPFRK 429
+LGRII GEDSDSDY + +ND+ P DEDD+EFMKRVKKTKAEKLS+VDHSKI+Y+PFRK
Sbjct: 432 ALGRIIQGEDSDSDYSEPKNDDDPSLDEDDEEFMKRVKKTKAEKLSLVDHSKIEYEPFRK 491
Query: 430 NFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEK 489
NFYIEVK+I+RMT EEV+ YRK+LELK+HGKDVP+PIK WHQTGLTSKI++T++KLNYEK
Sbjct: 492 NFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKKLNYEK 551
Query: 490 PMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT 549
PMPIQ QALP+IMSGRDCIGVAKTGSGKTL FVLPMLRHIKDQPPV AGDGP+GL+MAPT
Sbjct: 552 PMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPT 611
Query: 550 RELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSG 609
RELVQQIHSDIRKF+K +G+RCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTS
Sbjct: 612 RELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSS 671
Query: 610 GKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKV 669
GKITNLRRVT+LVMDEADRMFDMGFEPQITRI+QNIRP+RQTVLFSATFPRQVE LARKV
Sbjct: 672 GKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTVLFSATFPRQVETLARKV 731
Query: 670 LNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDA 729
LNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEW EKGKIL+FV SQEKCDA
Sbjct: 732 LNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWSEKGKILVFVQSQEKCDA 791
Query: 730 LFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINF 789
L+RD++K YPCLSLHG KDQTDRESTISDFK++VCNLLIATSVAARGLDVKELELV+NF
Sbjct: 792 LYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLLIATSVAARGLDVKELELVVNF 851
Query: 790 DAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALAD 849
DAPNHYEDYVHRVGRTGRAGRKGCA+TFISE+DAKY+PDLVKALELSEQ VPDDLKALAD
Sbjct: 852 DAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALELSEQPVPDDLKALAD 911
Query: 850 SFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEEDKSDSDDEDEGI 909
FM KV QG+EQAHGTGYGGSGFKFNEEE+E RKAAKKAQAKEYGFEEDKSDS+DE++ +
Sbjct: 912 GFMVKVKQGIEQAHGTGYGGSGFKFNEEEEEVRKAAKKAQAKEYGFEEDKSDSEDENDVV 971
Query: 910 RKA-GGDISQQDAL---AKISAIAAASKASASMPTPISAAQLLPNAGLPISLPGVLGLSI 965
RKA GG+ISQQ A A AA + A+A + P++A QLL N G ++PGVL +++
Sbjct: 972 RKAGGGEISQQQATFAQIAAIAAAAKAAAAAPVSAPVTANQLLANGGGLAAMPGVLPVTV 1031
Query: 966 PGAAPTVSATGLPVVPNDGAARAAALAAAINLQHNLAKIQADAMPEHYEAELEINDFPQN 1025
P +P++GA RAAA+ AA+NLQHNLAKIQADAMPEHYEAELEINDFPQN
Sbjct: 1032 ------------PTLPSEGAGRAAAMVAAMNLQHNLAKIQADAMPEHYEAELEINDFPQN 1079
Query: 1026 ARWKVTHKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAE 1085
ARWKVTHKETLGPISEWTGAAITTRGQ++P RI GPGERKLYLFIEGP+E+SVK AKAE
Sbjct: 1080 ARWKVTHKETLGPISEWTGAAITTRGQFYPTGRIPGPGERKLYLFIEGPSEKSVKHAKAE 1139
Query: 1086 LKRVLEDFTNQAL-SLPGGAQPGRYSVV 1112
LKRVLED TNQA+ SLPGGA GRYSV+
Sbjct: 1140 LKRVLEDITNQAMSSLPGGAS-GRYSVL 1166
|
Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3 |
| >sp|Q9SF41|RH45_ARATH DEAD-box ATP-dependent RNA helicase 45 OS=Arabidopsis thaliana GN=RH45 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1255 bits (3247), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 706/1082 (65%), Positives = 822/1082 (75%), Gaps = 106/1082 (9%)
Query: 42 EKDKHRDRDRRRDRDRDRDREKEREEKRERAREK-------EREREKRDREREDRERERE 94
EK K R + R+DRDR + R+ R+R K ER R +RDR+ D E E
Sbjct: 3 EKSKSRKENDRKDRDRSKKENGRRDTTEMRSRVKRCDSEEEERIRIRRDRKSSDFEEE-- 60
Query: 95 RERERRERDREREKRERERDRDKEKDRERKSRDREKRRKVESDDSDEDKDRDRKRRRRHD 154
E ER + R +K R+RD+++ + K + R+ E + K+R R+
Sbjct: 61 -EYERDSKRRGEDKGRGRRERDRDRGKYLKRDRERREREKEKGRKKQKKERSREDCNEES 119
Query: 155 DDHKERVRERSLSRSNRHRDENDESPREKLVEDDSDKKEKKTREEELEDEQRKLDEEMEK 214
DD K ++ + RS RH D D EKKTR+E++EDEQ++L EE+EK
Sbjct: 120 DDVKCGLKRKRTERS-RHGD---------------DDVEKKTRDEQVEDEQKQLAEEVEK 163
Query: 215 RRRRVQEWQELKRKKEESERENRGDANVEEPKAGRNWTLDREDSDDEEVPQTGKSETDMD 274
RRRRVQEWQELKR+ EE++ E++G P+ G+ WTLD E SDDE KS+++MD
Sbjct: 164 RRRRVQEWQELKRQNEEAQIESKG------PETGKAWTLDGE-SDDEV-----KSDSEMD 211
Query: 275 ADEEPKPSENQVGDAMLVDSDGGSAAPALQIG---AAEDEDIDPLDAFMNSMVLPEVEKL 331
D + K GDA +V S+ +A + G AA++++IDPLDAFMN+MVLPEVEKL
Sbjct: 212 VDRDTKLENG--GDAKMVASENETAVTVSENGGDRAADEDEIDPLDAFMNTMVLPEVEKL 269
Query: 332 KNTVEPSFTDGNNVESKKMDRKGDRRSNGEQPKKSSNKS-LGRIIPGEDSDSDYGDLEND 390
N V DG +D K + + G+Q KK NK+ LGRII GEDSDSDY + ++D
Sbjct: 270 SNIV----IDG------ILDFKMNGKETGDQAKKGFNKAALGRIIQGEDSDSDYSEPKSD 319
Query: 391 EKPLEDEDDDEFMKRVKKTKAEKLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYR 450
+ P DEDD+EFMKRVKKTKAEKLS+VDHSKI+Y+PFRKNFYIEVK+I+RMT + V+AYR
Sbjct: 320 DDPSLDEDDEEFMKRVKKTKAEKLSLVDHSKIEYEPFRKNFYIEVKDISRMTQDAVNAYR 379
Query: 451 KQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGV 510
K+LELK+HGKDVP+PI+ WHQTGLTSKI++T++KLNYEKPMPIQAQALP+IMSGRDCIGV
Sbjct: 380 KELELKVHGKDVPRPIQFWHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGV 439
Query: 511 AKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVR 570
AKTGSGKTL FVLPMLRHIKDQPPV AGDGP+GL+MAPTRELVQQI+SDIRKF+K +G+
Sbjct: 440 AKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGII 499
Query: 571 CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF 630
CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTS GKITNLRRVTYLVMDEADRMF
Sbjct: 500 CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMF 559
Query: 631 DMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQ 690
DMGFEPQITRIVQNIRPDRQTVLFSATFPRQVE LARKVLNKPVEIQVGGRSVVNKDITQ
Sbjct: 560 DMGFEPQITRIVQNIRPDRQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQ 619
Query: 691 LVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQ 750
LVE+RPES+RF RLLELLGEWYEKGK+L+FV SQEK
Sbjct: 620 LVEIRPESERFSRLLELLGEWYEKGKVLVFVRSQEK------------------------ 655
Query: 751 TDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGR 810
+ISDFKS+VCNLLIATSVAARGLDVKELELV+NFDAPNHYEDYVHRVGRTGRAGR
Sbjct: 656 -----SISDFKSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGR 710
Query: 811 KGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAKVNQGLEQAHGTGYGGS 870
KGCA+TFISE+DAKY+PDLVKALELSEQ VPDD+KA+A+ FMAKV QG+EQAHGTGYGGS
Sbjct: 711 KGCAVTFISEDDAKYAPDLVKALELSEQPVPDDVKAVAEGFMAKVKQGIEQAHGTGYGGS 770
Query: 871 GFKFNEEEDEKRKAAKKAQAKEYGFEEDKSDSDDEDEGIRKAGGDISQQDALAKISAIAA 930
GFKFNEEEDE RKAAKKAQAKEYGFEE+KSDS+DE++ +RKAGGDISQQ +I+
Sbjct: 771 GFKFNEEEDEVRKAAKKAQAKEYGFEEEKSDSEDENDVVRKAGGDISQQ----QITLAQI 826
Query: 931 ASKASASMPTPISAAQLLPNAGLPISLPGVLGLSIPGAAPTVSATGLPVVPNDGAARAAA 990
A+ ASA+ P++A QLLPN G + PG IP P DGA R AA
Sbjct: 827 AAIASAASKAPVTANQLLPNGGGLATEPG-----IP--------------PTDGAGRVAA 867
Query: 991 LAAAINLQHNLAKIQADAMPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTR 1050
+ AA N+Q LAKIQADA+PEHYEAELEINDFPQNARWKVTHKETLGPISEW+GA+ITTR
Sbjct: 868 MIAAANVQQYLAKIQADAIPEHYEAELEINDFPQNARWKVTHKETLGPISEWSGASITTR 927
Query: 1051 GQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLEDFTNQALSLPGGAQPGRYS 1110
G+++ RI GP ERKLYLF+EGPTE SVK AKAELKRVLED TNQ SLPGGAQ GRYS
Sbjct: 928 GKFYEAGRIPGPEERKLYLFVEGPTEISVKTAKAELKRVLEDITNQTFSLPGGAQSGRYS 987
Query: 1111 VV 1112
V+
Sbjct: 988 VL 989
|
Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q0J7Y8|RH45_ORYSJ DEAD-box ATP-dependent RNA helicase 45 OS=Oryza sativa subsp. japonica GN=Os08g0154200 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 1130 bits (2922), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 602/926 (65%), Positives = 702/926 (75%), Gaps = 71/926 (7%)
Query: 197 REEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESER------------ENRGDANVEE 244
R++ +E+E+++LDEEME RRRRV+EWQE KR +EE + +
Sbjct: 19 RQKMIEEEKKRLDEEMELRRRRVKEWQEQKRLEEEEAKRREQEAAAGAGTPAAAAGADGD 78
Query: 245 PKAGRNWTLDREDSDDEEVPQTGKSETDMDADEEPKPSENQVGDAMLVDSDGGSAAPALQ 304
AG+ WTLD E+SD+E + ++ D PSE +D AAP
Sbjct: 79 SNAGKKWTLDGEESDEEGYKEDSQNAEDDGGITADLPSEV---------NDANVAAP--- 126
Query: 305 IGAAEDEDIDPLDAFMNSMVLPEVEKLKNTVEPS-FTDGNNVESKKMDRKGDRRSNGEQP 363
E+++IDPLDAFM+SMVLPEV KL+ V +N+ K D SNG+
Sbjct: 127 ---MEEDEIDPLDAFMSSMVLPEVAKLETAVASMESMPASNMGDKNGKSAKDAVSNGD-- 181
Query: 364 KKSSNKSLGRIIPGEDSDSDYGDLENDEKPLEDEDDDEFMKRVKKTKAEKLSIVDHSKID 423
KK K++GRI+ G+DSDSDY D ++DE +DEDD+EFMKRVKKTK EKL+IVDHSKI+
Sbjct: 182 KKGQKKAMGRIMQGDDSDSDYDDDDDDEGGSKDEDDEEFMKRVKKTKVEKLAIVDHSKIE 241
Query: 424 YQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIR 483
YQPFRKN YIEVK+I MT EEV+ YRK LELK+HGKDVPKPIKTW Q+GLTSK+++TI+
Sbjct: 242 YQPFRKNLYIEVKDITMMTGEEVATYRKNLELKVHGKDVPKPIKTWVQSGLTSKLLDTIK 301
Query: 484 KLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVG 543
KL +EKPMPIQAQALP+IMSGRDCIG+AKTGSGKTLAFVLPMLRH+KDQPPV GDGP+G
Sbjct: 302 KLGFEKPMPIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHVKDQPPVVPGDGPIG 361
Query: 544 LIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMID 603
LIMAPTRELV QIHSDI+KFAK +G+ CV +YGGSGVAQQISELKRG EIVVCTPGRMID
Sbjct: 362 LIMAPTRELVVQIHSDIKKFAKSLGINCVAIYGGSGVAQQISELKRGAEIVVCTPGRMID 421
Query: 604 ILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVE 663
ILCTS GKITNLRRVT+LVMDEADRMFDMGFEPQITRIVQN RPDRQTVLFSA FPRQVE
Sbjct: 422 ILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIVQNTRPDRQTVLFSAIFPRQVE 481
Query: 664 ILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHS 723
ILARKVL KPVEIQVGGRSVVNKDITQLVEVRPE++RFLRLLELLGEW+++GKIL+FVHS
Sbjct: 482 ILARKVLTKPVEIQVGGRSVVNKDITQLVEVRPENERFLRLLELLGEWFDRGKILVFVHS 541
Query: 724 QEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKEL 783
Q+KCD+L +DL + GYPCLSLHG KDQTDREST++DFKSN L
Sbjct: 542 QDKCDSLLKDLFQRGYPCLSLHGGKDQTDRESTLADFKSN-------------------L 582
Query: 784 ELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDD 843
ELV+N+D PNHYEDYVHRVGRTG AGRKG A+TFIS+E+ +Y+PDL KALELSEQ VP D
Sbjct: 583 ELVVNYDVPNHYEDYVHRVGRTGHAGRKGFAVTFISDEEERYAPDLAKALELSEQAVPQD 642
Query: 844 LKALADSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEEDKSDSD 903
LK LAD FMAKV QG EQAHGTGYGGSGFKFNEEEDE R++AKKAQA+EYG+EEDKSDSD
Sbjct: 643 LKGLADRFMAKVKQGTEQAHGTGYGGSGFKFNEEEDEARRSAKKAQAREYGYEEDKSDSD 702
Query: 904 -DEDEGIRKAGGDISQQDALAKISAIAAASKASASMPTPISAAQLLPNAGLPISLPGVLG 962
DE+ G+RKAGGD++ Q A +A A+ +AS + NAG +S+P V
Sbjct: 703 SDEEGGVRKAGGDLAAQAIAAAQAAATLAAAKAASNANQQVQST---NAGSLLSIPVV-- 757
Query: 963 LSIPGAAPTVSATGLPVVPNDGAARAAALAAAINLQHNLAKIQADAMPEHYEAELEINDF 1022
AP AT A AL AA+N+Q NLA+IQA +PEHYE EL+INDF
Sbjct: 758 ----ANAPNNEAT------------ARALQAALNIQQNLARIQAHVVPEHYEVELDINDF 801
Query: 1023 PQNARWKVTHKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRA 1082
PQNARWK+THKETLGPI +WT AAITTRG + P +I G ERKLYLFIEGPTE SVK+A
Sbjct: 802 PQNARWKITHKETLGPIQDWTEAAITTRGTFIPQGKIVGANERKLYLFIEGPTELSVKKA 861
Query: 1083 KAELKRVLEDFTNQALSLPGGAQPGR 1108
K+ELKRVLED N AL+LPG AQ G+
Sbjct: 862 KSELKRVLEDCANHALNLPGSAQTGK 887
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q4TVV3|DDX46_DANRE Probable ATP-dependent RNA helicase DDX46 OS=Danio rerio GN=ddx46 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 741 bits (1912), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/953 (44%), Positives = 563/953 (59%), Gaps = 98/953 (10%)
Query: 204 EQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGDAN--VEEPKAGRNWTLDREDSDDE 261
+Q L+EEM KR+ RV++W+E +RK + EN G+ +EE K G+ W+L ED D+E
Sbjct: 120 DQNTLEEEMRKRKERVEKWREEQRK---TAMENIGEIKKELEEMKQGKKWSL--EDDDEE 174
Query: 262 EVPQTGKSETDMDADEEPKPSENQVGDAMLVDSDGGSAAPALQIGAAEDEDIDPLDAFMN 321
+ D + E++DPLDA+M
Sbjct: 175 Q------------------------------DKAAEAEESERMEEEEVGEEVDPLDAYME 204
Query: 322 SMVLPEVEKLKNTVEPSFTDGNNVESKKMDRKGDRRSNGEQPKKSSNKSLGRIIPGEDSD 381
V EV+K G N + M + + K G ++ ++D
Sbjct: 205 E-VKEEVKKFNMGT----MKGANDKKGGMSVTKVVTVVKTKKMPHATKKKGELM---END 256
Query: 382 SDYGDLENDEKPLEDEDDDEFMKRVKKTKAEKLSIVDHSKIDYQPFRKNFYIEVKEIARM 441
D + ++E E+ D + + + + L VDH KI Y+PFRKNFY+EV E+ARM
Sbjct: 257 QDAMEYSSEE---EEVDLQTALTGFQTKQRKVLEPVDHQKIQYEPFRKNFYVEVPELARM 313
Query: 442 TPEEVSAYRKQLE-LKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPV 500
+PEEVS YR +LE + + GK PKPIKTW Q G++ K++ ++K NYEKP PIQAQA+P
Sbjct: 314 SPEEVSEYRLELEGISVKGKGCPKPIKTWVQCGISMKVLNALKKHNYEKPTPIQAQAIPA 373
Query: 501 IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDI 560
IMSGRD IG+AKTGSGKT+AF+LPM RHI DQ PV +GP+ +IM PTREL QI +
Sbjct: 374 IMSGRDLIGIAKTGSGKTIAFLLPMFRHILDQRPVGEAEGPLAVIMTPTRELALQITKEC 433
Query: 561 RKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTY 620
+KF+K + +R V VYGG+G+++QI+ELKRG EI+VCTPGRMID+L + G++TNLRRVTY
Sbjct: 434 KKFSKSLALRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANNGRVTNLRRVTY 493
Query: 621 LVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGG 680
+V+DEADRMFDMGFEPQ+ RIV N+RPDRQTV+FSATFPR +E LAR++L+KPVE+QVGG
Sbjct: 494 VVIDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRTMEALARRILSKPVEVQVGG 553
Query: 681 RSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYP 740
RSVV D+ Q V V E +FL+LLE+LG + EKG ++IFV QE D L +DL+K YP
Sbjct: 554 RSVVCSDVEQHVIVIEEEKKFLKLLEILGHYQEKGSVIIFVDKQEHADGLLKDLMKASYP 613
Query: 741 CLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVH 800
C+SLHG DQ DR+S I+DFK+ C LL+ATSVAARGLDVK+L LV+N+ PNHYEDYVH
Sbjct: 614 CMSLHGGIDQYDRDSIINDFKNGACRLLVATSVAARGLDVKQLILVVNYSCPNHYEDYVH 673
Query: 801 RVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAKVN-QGL 859
R GRTGRAG KG A TFI+E A+YS D++KALELS VP +L+ L +F + +G
Sbjct: 674 RAGRTGRAGNKGYAYTFITEGQARYSGDILKALELSGSSVPAELEQLWTNFKEQQKAEGK 733
Query: 860 EQAHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEEDKSDSDDEDEGI---------- 909
+G+ G GFKF+E E KK Q G DSDDED +
Sbjct: 734 IIKSSSGFSGKGFKFDETEHALANERKKLQKWALGLH----DSDDEDTALDIDEQIESMF 789
Query: 910 --------RKAGGDISQQDALAKISAIAAASKASASMPTP----ISAAQLLPNAGLPISL 957
A G +S A +S +A S+ TP I ++ L I
Sbjct: 790 NSKKRVKDFSAPGSVSAGSA-GGVSGSVSAVSGLGSLSTPSAGNIQKLEIAKKLALRIQA 848
Query: 958 PGVLGLS----IPGAAPTVSATGLPVVPNDGAARAA-ALAAAINLQHNLAKIQ------- 1005
LG + A + G + P+ A A A IN + N ++
Sbjct: 849 QKNLGAEAQDVMQQATNAILRGGTIIAPSVSAKTIAEQQAEKINAKLNYTPVEKLEEERQ 908
Query: 1006 ---ADAMPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYFPPSRIAGP 1062
A + YE ELEINDFPQ ARWKVT KE L I E++ AAIT RG YFPP +
Sbjct: 909 AAEAAETVKRYEEELEINDFPQTARWKVTSKEALQRIGEYSEAAITIRGTYFPPGKEPKE 968
Query: 1063 GERKLYLFIEGPTEQSVKRAKAELKRVLEDFTNQALSLPGGAQP---GRYSVV 1112
GERK+YL IE E +V++AKAE+ R++++ + + L QP GRY V+
Sbjct: 969 GERKIYLAIESANELAVQKAKAEITRLIKE---ELIRLQNSYQPTSKGRYKVL 1018
|
Plays an essential role in splicing, either prior to, or during A complex formation. Danio rerio (taxid: 7955) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q569Z5|DDX46_MOUSE Probable ATP-dependent RNA helicase DDX46 OS=Mus musculus GN=Ddx46 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/947 (45%), Positives = 582/947 (61%), Gaps = 104/947 (10%)
Query: 204 EQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGDAN--VEEPKAGRNWTLDREDSDDE 261
+Q KL+EEM KR+ RV++W+E +RKK EN G+ +EE K G+ W+L+ +D D++
Sbjct: 152 DQNKLEEEMRKRKERVEKWREEQRKKA---MENIGELKKEIEEMKQGKKWSLEDDDDDED 208
Query: 262 EVPQTGKSETDMDADEEPKPSENQVGDAMLVDSDGGSAAPALQIGAAEDEDIDPLDAFMN 321
+ + K T+M EDE++DPLDA+M
Sbjct: 209 DPAEAEKEGTEM-----------------------------------EDEELDPLDAYME 233
Query: 322 SMVLPEVEKLKNTVEPSFTDGNNVESKKMDRKGDRRSNGEQPKKSSNKSLGRIIPGEDSD 381
V EV+K N+ S K +++S K + + + D+D
Sbjct: 234 E-VKEEVKKF------------NMRSVKGGAGNEKKSGPTVTKVVTVVTTKK--AVVDAD 278
Query: 382 SDYGDL-ENDEKPLE-----DEDDDEFMKRVKKTKAEKL-SIVDHSKIDYQPFRKNFYIE 434
G+L END+ +E +E D + +TK KL VDH KI+Y+PFRKNFY+E
Sbjct: 279 KKKGELMENDQDAMEYSSEEEEVDLQTALTGYQTKQRKLLEPVDHGKIEYEPFRKNFYVE 338
Query: 435 VKEIARMTPEEVSAYRKQLE-LKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPI 493
V E+A+M+ EEV+ +R ++E + + GK PKPIK+W Q G++ KI+ +++K YEKP PI
Sbjct: 339 VPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPI 398
Query: 494 QAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553
Q QA+P IMSGRD IG+AKTGSGKT+AF+LPM RHI DQ + G+GP+ +IM PTREL
Sbjct: 399 QTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELA 458
Query: 554 QQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKIT 613
QI + +KF+K +G+R V VYGG+G+++QI+ELKRG EI+VCTPGRMID+L + G++T
Sbjct: 459 LQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVT 518
Query: 614 NLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKP 673
NLRRVTY+V+DEADRMFDMGFEPQ+ RIV N+RPDRQTV+FSATFPR +E LAR++L+KP
Sbjct: 519 NLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKP 578
Query: 674 VEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRD 733
+E+QVGGRSVV D+ Q V V E +FL+LLELLG + E G ++IFV QE D L +D
Sbjct: 579 IEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKD 638
Query: 734 LLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPN 793
L++ YPC+SLHG DQ DR+S I+DFK+ C LL+ATSVAARGLDVK L LV+N+ PN
Sbjct: 639 LMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPN 698
Query: 794 HYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFM- 852
HYEDYVHR GRTGRAG KG A TFI+E+ A+Y+ D++KALELS VP DL+ L F
Sbjct: 699 HYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDLEKLWSDFKD 758
Query: 853 AKVNQGLEQAHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEEDKSDSDDEDEGIRKA 912
+ +G +G+ G GFKF+E E KK Q G + DSDDED +
Sbjct: 759 QQKAEGKIIKKSSGFSGKGFKFDETEQALANERKKLQKAALGLQ----DSDDEDAAV--- 811
Query: 913 GGDISQQ-----DALAKISAIAAASKASASMPTPISAAQLLPNAGLPISLPGVLGLSIPG 967
DI +Q ++ ++ +AA +S PT +A +L L + + L I
Sbjct: 812 --DIDEQIESMFNSKKRVKDMAAPGTSSVPAPTAGNAEKLEIAKRLALRINAQKNLGIES 869
Query: 968 -------AAPTVSATGLPVVPNDGAARAA-ALAAAINLQHNLAKI-----------QADA 1008
A + G + P A A LA IN + N + Q+++
Sbjct: 870 QVDVMQQATNAILRGGTILAPTVSAKTIAEQLAEKINAKLNYVPLEKQEEERQEGGQSES 929
Query: 1009 MPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLY 1068
+ YE ELEINDFPQ ARWKVT KE L ISE++ AAIT RG YFPP + GERK+Y
Sbjct: 930 F-KRYEEELEINDFPQTARWKVTSKEALQRISEYSEAAITIRGTYFPPGKEPKEGERKIY 988
Query: 1069 LFIEGPTEQSVKRAKAELKRVLEDFTNQALSLPGGAQP---GRYSVV 1112
L IE E +V++AKAE+ R++++ + + L QP GRY V+
Sbjct: 989 LAIESANELAVQKAKAEITRLIKE---ELIRLQNSYQPTNKGRYKVL 1032
|
Plays an essential role in splicing, either prior to, or during A complex formation. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q62780|DDX46_RAT Probable ATP-dependent RNA helicase DDX46 OS=Rattus norvegicus GN=Ddx46 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/957 (45%), Positives = 584/957 (61%), Gaps = 124/957 (12%)
Query: 204 EQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGDAN--VEEPKAGRNWTLDREDSDDE 261
+Q KL+EEM KR+ RV++W+E +RKK EN G+ +EE K G+ W+L+ +D D++
Sbjct: 152 DQNKLEEEMRKRKERVEKWREEQRKKA---MENIGELKKEIEEMKQGKKWSLEDDDDDED 208
Query: 262 EVPQTGKSETDMDADEEPKPSENQVGDAMLVDSDGGSAAPALQIGAAEDEDIDPLDAFMN 321
+ + K +M EDE++DPLDA+M
Sbjct: 209 DPAEAEKEGNEM-----------------------------------EDEELDPLDAYME 233
Query: 322 SMVLPEVEKLKNTVEPSFTDGNNVESKKMDRKGDRRSNGEQPKKSSNKSLGRIIPGEDSD 381
V EV+K N+ S K +++S K + + + D+D
Sbjct: 234 E-VKEEVKKF------------NMRSVKGGAGNEKKSGPTVTKVVTVVTTKK--AVVDAD 278
Query: 382 SDYGDL-ENDEKPLE-----DEDDDEFMKRVKKTKAEKL-SIVDHSKIDYQPFRKNFYIE 434
G+L END+ +E +E D + +TK KL VDH KI+Y+PFRKNFY+E
Sbjct: 279 KKKGELMENDQDAMEYSSEEEEVDLQTALTGYQTKQRKLLEPVDHGKIEYEPFRKNFYVE 338
Query: 435 VKEIARMTPEEVSAYRKQLE-LKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPI 493
V E+A+M+ EEV+ +R ++E + + GK PKPIK+W Q G++ KI+ +++K YEKP PI
Sbjct: 339 VPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPI 398
Query: 494 QAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553
Q QA+P IMSGRD IG+AKTGSGKT+AF+LPM RHI DQ + G+GP+ +IM PTREL
Sbjct: 399 QTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELA 458
Query: 554 QQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKIT 613
QI + +KF+K +G+R V VYGG+G+++QI+ELKRG EI+VCTPGRMID+L + G++T
Sbjct: 459 LQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVT 518
Query: 614 NLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKP 673
NLRRVTY+V+DEADRMFDMGFEPQ+ RIV N+RPDRQTV+FSATFPR +E LAR++L+KP
Sbjct: 519 NLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKP 578
Query: 674 VEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRD 733
+E+QVGGRSVV D+ Q V V E +FL+LLELLG + E G ++IFV QE D L +D
Sbjct: 579 IEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKD 638
Query: 734 LLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPN 793
L++ YPC+SLHG DQ DR+S I+DFK+ C LL+ATSVAARGLDVK L LV+N+ PN
Sbjct: 639 LMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPN 698
Query: 794 HYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFM- 852
HYEDYVHR GRTGRAG KG A TFI+E+ A+Y+ D++KALELS VP DL+ L F
Sbjct: 699 HYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDLEKLWSDFKD 758
Query: 853 AKVNQGLEQAHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEEDKSDSDDEDEGIRKA 912
+ +G +G+ G GFKF+E E KK Q G + DSDDED +
Sbjct: 759 QQKAEGKIIKKSSGFSGKGFKFDETEQALANERKKLQKAALGLQ----DSDDEDAAV--- 811
Query: 913 GGDISQQ-----DALAKISAIAAASKASASMPTPISAAQLLPNAGLPISLPGVLGLSI-- 965
DI +Q ++ ++ +AA +SA PT +A +L L + + L I
Sbjct: 812 --DIDEQIESMFNSKKRVKDMAAPGTSSAPAPTAGNAEKLEIAKRLALRINAQKNLGIES 869
Query: 966 ----------------PGAAPTVSATGLPVVPNDGAARAAALAAAINLQHNLAKI----- 1004
P APTVSA + A LA IN + N +
Sbjct: 870 QVDVMQQATNAILRGGPLLAPTVSAKTI----------AEQLAEKINAKLNYVPLEKQEE 919
Query: 1005 ------QADAMPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYFPPSR 1058
Q+++ + YE ELEINDFPQ ARWKVT KE L ISE++ AAIT RG YFPP +
Sbjct: 920 ERQEGGQSESF-KRYEEELEINDFPQTARWKVTSKEALQRISEYSEAAITIRGTYFPPGK 978
Query: 1059 IAGPGERKLYLFIEGPTEQSVKRAKAELKRVLEDFTNQALSLPGGAQP---GRYSVV 1112
GERK+YL IE E +V++AKAE+ R++++ + + L QP GRY V+
Sbjct: 979 EPKEGERKIYLAIESANELAVQKAKAEITRLIKE---ELIRLQNSYQPTNKGRYKVL 1032
|
Plays an essential role in splicing, either prior to, or during A complex formation. Rattus norvegicus (taxid: 10116) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q7L014|DDX46_HUMAN Probable ATP-dependent RNA helicase DDX46 OS=Homo sapiens GN=DDX46 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 727 bits (1877), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/945 (45%), Positives = 578/945 (61%), Gaps = 101/945 (10%)
Query: 204 EQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGDAN--VEEPKAGRNWTLDREDSDDE 261
+Q KL+EEM KR+ RV++W+E +RKK EN G+ +EE K G+ W+L+ +D D++
Sbjct: 152 DQNKLEEEMRKRKERVEKWREEQRKKA---MENIGELKKEIEEMKQGKKWSLEDDDDDED 208
Query: 262 EVPQTGKSETDMDADEEPKPSENQVGDAMLVDSDGGSAAPALQIGAAEDEDIDPLDAFMN 321
+ + K +M E E++DPLDA+M
Sbjct: 209 DPAEAEKEGNEM-----------------------------------EGEELDPLDAYME 233
Query: 322 SMVLPEVEKLKNTVEPSFTDGNNVESKKMDRKGDRRSNGEQPKKSSNKSLGRIIPGEDSD 381
V EV+K N+ S K +++S K + + + DSD
Sbjct: 234 E-VKEEVKKF------------NMRSVKGGGGNEKKSGPTVTKVVTVVTTKK--AVVDSD 278
Query: 382 SDYGDL-ENDEKPLE-----DEDDDEFMKRVKKTKAEKL-SIVDHSKIDYQPFRKNFYIE 434
G+L END+ +E +E D + +TK KL VDH KI+Y+PFRKNFY+E
Sbjct: 279 KKKGELMENDQDAMEYSSEEEEVDLQTALTGYQTKQRKLLEPVDHGKIEYEPFRKNFYVE 338
Query: 435 VKEIARMTPEEVSAYRKQLE-LKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPI 493
V E+A+M+ EEV+ +R ++E + + GK PKPIK+W Q G++ KI+ +++K YEKP PI
Sbjct: 339 VPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPI 398
Query: 494 QAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553
Q QA+P IMSGRD IG+AKTGSGKT+AF+LPM RHI DQ + G+GP+ +IM PTREL
Sbjct: 399 QTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELA 458
Query: 554 QQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKIT 613
QI + +KF+K +G+R V VYGG+G+++QI+ELKRG EI+VCTPGRMID+L + G++T
Sbjct: 459 LQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVT 518
Query: 614 NLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKP 673
NLRRVTY+V+DEADRMFDMGFEPQ+ RIV N+RPDRQTV+FSATFPR +E LAR++L+KP
Sbjct: 519 NLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKP 578
Query: 674 VEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRD 733
+E+QVGGRSVV D+ Q V V E +FL+LLELLG + E G ++IFV QE D L +D
Sbjct: 579 IEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKD 638
Query: 734 LLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPN 793
L++ YPC+SLHG DQ DR+S I+DFK+ C LL+ATSVAARGLDVK L LV+N+ PN
Sbjct: 639 LMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPN 698
Query: 794 HYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFM- 852
HYEDYVHR GRTGRAG KG A TFI+E+ A+Y+ D++KALELS VP DL+ L F
Sbjct: 699 HYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDLEKLWSDFKD 758
Query: 853 AKVNQGLEQAHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEEDKSDSDDEDEGIRKA 912
+ +G +G+ G GFKF+E E KK Q G + DSDDED +
Sbjct: 759 QQKAEGKIIKKSSGFSGKGFKFDETEQALANERKKLQKAALGLQ----DSDDEDAAV--- 811
Query: 913 GGDISQQ-----DALAKISAIAAASKASASMPTPISAAQLLPNAGLPISLPGVLGLSIPG 967
DI +Q ++ ++ +AA +S PT +A +L L + + L I
Sbjct: 812 --DIDEQIESMFNSKKRVKDMAAPGTSSVPAPTAGNAEKLEIAKRLALRINAQKNLGIES 869
Query: 968 ------AAPTVSATGLPVVPNDGAARAA-ALAAAINLQHNLAKIQ----------ADAMP 1010
A + G + P A A LA IN + N ++ +
Sbjct: 870 QDVMQQATNAILRGGTILAPTVSAKTIAEQLAEKINAKLNYVPLEKQEEERQDGGQNESF 929
Query: 1011 EHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLF 1070
+ YE ELEINDFPQ ARWKVT KE L ISE++ AAIT RG YFPP + GERK+YL
Sbjct: 930 KRYEEELEINDFPQTARWKVTSKEALQRISEYSEAAITIRGTYFPPGKEPKEGERKIYLA 989
Query: 1071 IEGPTEQSVKRAKAELKRVLEDFTNQALSLPGGAQP---GRYSVV 1112
IE E +V++AKAE+ R++++ + + L QP GRY V+
Sbjct: 990 IESANELAVQKAKAEITRLIKE---ELIRLQNSYQPTNKGRYKVL 1031
|
Plays an essential role in splicing, either prior to, or during splicing A complex formation. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q5R6D8|DDX46_PONAB Probable ATP-dependent RNA helicase DDX46 OS=Pongo abelii GN=DDX46 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 727 bits (1876), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/946 (45%), Positives = 578/946 (61%), Gaps = 102/946 (10%)
Query: 204 EQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGDAN--VEEPKAGRNWTLDREDSDDE 261
+Q KL+EEM KR+ RV++W+E +RKK EN G+ +EE K G+ W+L+ +D D++
Sbjct: 152 DQNKLEEEMRKRKERVEKWREEQRKKA---MENIGELKKEIEEMKQGKKWSLEDDDDDED 208
Query: 262 EVPQTGKSETDMDADEEPKPSENQVGDAMLVDSDGGSAAPALQIGAAEDEDIDPLDAFMN 321
+ + K +M E E++DPLDA+M
Sbjct: 209 DPAEAEKEGNEM-----------------------------------EGEELDPLDAYME 233
Query: 322 SMVLPEVEKLKNTVEPSFTDGNNVESKKMDRKGDRRSNGEQPKKSSNKSLGRIIPGEDSD 381
V EV+K N+ S K +++S K + + + DSD
Sbjct: 234 E-VKEEVKKF------------NMRSVKGGGGNEKKSGPTVTKVVTVVTTKK--AVVDSD 278
Query: 382 SDYGDL-ENDEKPLE-----DEDDDEFMKRVKKTKAEKL-SIVDHSKIDYQPFRKNFYIE 434
G+L END+ +E +E D + +TK KL VDH KI+Y+PFRKNFY+E
Sbjct: 279 KKKGELMENDQDAMEYSSEEEEVDLQTALTGYQTKQRKLLEPVDHGKIEYEPFRKNFYVE 338
Query: 435 VKEIARMTPEEVSAYRKQLE-LKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPI 493
V E+A+M+ EEV+ +R ++E + + GK PKPIK+W Q G++ KI+ +++K YEKP PI
Sbjct: 339 VPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPI 398
Query: 494 QAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553
Q QA+P IMSGRD IG+AKTGSGKT+AF+LPM RHI DQ + G+GP+ +IM PTREL
Sbjct: 399 QTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELA 458
Query: 554 QQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKIT 613
QI + +KF+K +G+R V VYGG+G+++QI+ELKRG EI+VCTPGRMID+L + G++T
Sbjct: 459 LQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVT 518
Query: 614 NLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKP 673
NLRRVTY+V+DEADRMFDMGFEPQ+ RIV N+RPDRQTV+FSATFPR +E L R++L+KP
Sbjct: 519 NLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALVRRILSKP 578
Query: 674 VEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRD 733
+E+QVGGRSVV D+ Q V V E +FL+LLELLG + E G ++IFV QE D L +D
Sbjct: 579 IEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKD 638
Query: 734 LLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPN 793
L++ YPC+SLHG DQ DR+S I+DFK+ C LL+ATSVAARGLDVK L LV+N+ PN
Sbjct: 639 LMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPN 698
Query: 794 HYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFM- 852
HYEDYVHR GRTGRAG KG A TFI+E+ A+Y+ D++KALELS VP DL+ L F
Sbjct: 699 HYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDLEKLWSDFKD 758
Query: 853 AKVNQGLEQAHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEEDKSDSDDEDEGIRKA 912
+ +G +G+ G GFKF+E E KK Q G + DSDDED +
Sbjct: 759 QQKAEGKIIKKSSGFSGKGFKFDETEQALANERKKLQKAALGLQ----DSDDEDAAV--- 811
Query: 913 GGDISQQ-----DALAKISAIAAASKASASMPTPISAAQLLPNAGLPISLPGVLGLSIPG 967
DI +Q ++ ++ +AA +SA PT +A +L L + + L I
Sbjct: 812 --DIDEQIESMFNSKKRVKDMAAPGTSSAPAPTAGNAEKLEIAKRLALRINAQKNLGIES 869
Query: 968 -------AAPTVSATGLPVVPNDGAARAA-ALAAAINLQHNLAKIQ----------ADAM 1009
A + G + P A A LA IN + N ++ +
Sbjct: 870 QVDVMQQATNAILRGGTILAPTVSAKTIAEQLAEKINAKLNYVPLEKQEEERQDGGQNES 929
Query: 1010 PEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYL 1069
+ YE ELEINDFPQ ARWKVT KE L ISE++ AAIT RG YFPP + GERK+YL
Sbjct: 930 FKRYEEELEINDFPQTARWKVTSKEALQRISEYSEAAITIRGTYFPPGKEPKEGERKIYL 989
Query: 1070 FIEGPTEQSVKRAKAELKRVLEDFTNQALSLPGGAQP---GRYSVV 1112
IE E +V++AKAE+ R++++ + + L QP GRY V+
Sbjct: 990 AIESANELAVQKAKAEITRLIKE---ELIRLQNSYQPTNKGRYKVL 1032
|
Plays an essential role in splicing, either prior to, or during A complex formation. Pongo abelii (taxid: 9601) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q1DHB2|PRP5_COCIM Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Coccidioides immitis (strain RS) GN=PRP5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/834 (47%), Positives = 536/834 (64%), Gaps = 79/834 (9%)
Query: 297 GSAAPALQIGAAEDEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMDRKGDR 356
GSA P + ++E+IDPLDAFM+ LK++V V++ K
Sbjct: 425 GSAEP---MDVEDEEEIDPLDAFMSG--------LKDSV--------TVDASKY------ 459
Query: 357 RSNGEQPKKSSNKSLGRIIPGEDSDSDYGDLENDEKPLEDEDDDEFMKRVKKTKAEK-LS 415
R N +PK ++ ++ +GD ++ + D + D+F+ KT+ +K L
Sbjct: 460 RKNVSKPK-------------QEPEAIFGDEDDVDLKAMDFEADDFLAITSKTRKKKDLP 506
Query: 416 IVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLE-LKIHGKDVPKPIKTWHQTGL 474
V+H IDY+PFRK+FY E ++A + EEV+A R +L+ +K+ G DVPKP++ W Q GL
Sbjct: 507 TVNHETIDYEPFRKSFYTEPVDLAELNDEEVAALRLELDGIKVRGVDVPKPVQKWSQCGL 566
Query: 475 TSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPP 534
+ ++ IRKL YE+P IQ+QA+P IMSGRD IGVAKTGSGKT+AF+LPM RHIKDQ P
Sbjct: 567 GVQTLDVIRKLGYEQPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRP 626
Query: 535 VAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIV 594
+ +GPVGLIM PTREL QIH + + F K + +R V YGG+ + QI+ELKRG EI+
Sbjct: 627 LENMEGPVGLIMTPTRELATQIHKECKPFLKALNLRAVCAYGGAPIKDQIAELKRGAEII 686
Query: 595 VCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLF 654
VCTPGRMID+L + G++TNLRRVTY+V+DEADRMFDMGFEPQ+ +I+ NIRP RQTVLF
Sbjct: 687 VCTPGRMIDLLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIISNIRPSRQTVLF 746
Query: 655 SATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWY-- 712
SATFPR +E LARK L KPVEI VGGRSVV ++ITQ+VEVRPE+ +F+RLLELLG Y
Sbjct: 747 SATFPRNMEALARKTLTKPVEIIVGGRSVVAQEITQIVEVRPENTKFVRLLELLGNLYSD 806
Query: 713 ---EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLI 769
E + LIFV QE D L RDL++ GYPC+S+HG KDQ DR+STI DFK+ + +LI
Sbjct: 807 DNNEDARALIFVDRQEAADGLLRDLMRKGYPCMSIHGGKDQVDRDSTIDDFKAGIFPVLI 866
Query: 770 ATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDL 829
ATSVAARGLDVK+L+LVIN+DAPNH EDYVHR GRTGRAG G A+TF++EE +YS D+
Sbjct: 867 ATSVAARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEEQERYSVDI 926
Query: 830 VKALELSEQVVPDDLKALADSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEKRKAAKKAQ 889
KAL+ S Q VP+ ++ + DSF+ KV G E+A +G+GG G E D++R AA+ +
Sbjct: 927 AKALKQSGQSVPEAVQKMVDSFLEKVKSGKEKASASGFGGKGL---ERLDQERDAARNRE 983
Query: 890 AKEYGFEEDKSDSDDEDEGIRKAGGDISQQDALAKISAIAAASKASASMPTPISAAQLLP 949
K Y E+ + +++++ ++D ++ A AA++ S+S PTP SA +P
Sbjct: 984 RKTYKTGEEGEEDEEKEK---------KEKDKGEELFAKAASAVQSSSAPTP-SATPGVP 1033
Query: 950 NAGLPISLPGVLGL-SIPGAAPTVSATGLPVVPNDGAARAAALAAAINLQHNLAKIQADA 1008
I L G + + A P+ + T P D + + A I+ + N A +
Sbjct: 1034 KG---IDLDGKITVHKTERATPSTTGTN----PLD---KVGSAVADIHARLNKAGVMRSG 1083
Query: 1009 MP--------EHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYFPPSRIA 1060
+P + A LEINDFPQ ARW VT++ + I E TG +ITT+G Y+PP +
Sbjct: 1084 VPIDNKGPDAGAFHATLEINDFPQKARWAVTNRTNVAKILEATGTSITTKGSYYPPGKEP 1143
Query: 1061 GPGER-KLYLFIEGPTEQSVKRAKAELKRVLEDFTNQAL-SLPGGAQPGRYSVV 1112
GP E KLY+ +EG TE V A EL R+L++ T A S GRY+V+
Sbjct: 1144 GPNENPKLYILVEGDTELVVTNAMRELMRLLKEGTIAAADSEARAPASGRYNVL 1197
|
ATP-dependent RNA helicase involved spliceosome assembly and in nuclear splicing. Catalyzes an ATP-dependent conformational change of U2 snRNP. Bridges U1 and U2 snRNPs and enables stable U2 snRNP association with intron RNA. Coccidioides immitis (strain RS) (taxid: 246410) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q553B1|DDX46_DICDI ATP-dependent RNA helicase ddx46 OS=Dictyostelium discoideum GN=helB1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/712 (49%), Positives = 485/712 (68%), Gaps = 35/712 (4%)
Query: 417 VDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTS 476
DH+ I Y F+KNFYIEV +A MT EV +R +L +KI GKD PKPI++W Q GLT
Sbjct: 459 TDHTSIKYAEFQKNFYIEVPVLANMTETEVLDFRSELGVKITGKDCPKPIQSWAQAGLTE 518
Query: 477 KIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVA 536
K+ ++K YEKP IQAQ +P IM+GRD IG+A+TGSGKTLAF+LPM RHI QP A
Sbjct: 519 KVHLLLKKFQYEKPTSIQAQTIPAIMNGRDLIGIARTGSGKTLAFLLPMFRHILAQPKSA 578
Query: 537 AGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVC 596
G+G + LIM+PTREL QIH + +KF+KV+G+R VYGG+ +++QI+ELKRG +IVVC
Sbjct: 579 PGEGMIALIMSPTRELALQIHVECKKFSKVLGLRTACVYGGASISEQIAELKRGADIVVC 638
Query: 597 TPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSA 656
TPGRMIDILC + +ITNLRRVT+LV+DEADRMFDMGF PQI IV +IRPDRQT++FSA
Sbjct: 639 TPGRMIDILCANNRRITNLRRVTFLVLDEADRMFDMGFGPQINCIVDSIRPDRQTIMFSA 698
Query: 657 TFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGK 716
TFP +VE +A+K+LNKP+EI GGRS+V+ DI Q VEVRP RF RL+ELL WY KG+
Sbjct: 699 TFPPKVENVAKKILNKPLEIIAGGRSIVSSDIEQFVEVRPTETRFRRLIELLSIWYHKGQ 758
Query: 717 ILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAAR 776
ILIF + QE D L+R L Y CLSLHG+KDQTDR+ TISDFK+ V +LIAT +A+R
Sbjct: 759 ILIFTNRQETTDNLYRQLSNSQYQCLSLHGSKDQTDRDETISDFKNKVKTILIATPLASR 818
Query: 777 GLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELS 836
GLD+K+L LV+NFD P+H EDYVHRVGRTGRAG +G A TFI+ ++ ++S ++KALE S
Sbjct: 819 GLDIKDLNLVVNFDCPDHLEDYVHRVGRTGRAGNRGTAYTFITPDEERFSSSIIKALEQS 878
Query: 837 EQVVPDDLKALADSFMAKVNQGLEQAHG-TGYGGSGFKFNEEEDEKRKAAKKAQAKEYGF 895
VPD+L+ L D++ K +G + TG+ G G KF+ E++K+ +K Q K YG
Sbjct: 879 GSKVPDELRKLNDTYEKKRKEGKDVLLAPTGFTGRGHKFDAAEEDKKNIERKQQRKAYGI 938
Query: 896 EEDKSDSDDEDEGIRKAGGDIS----QQDALAKISAIAAASKASASMP----TPISAAQL 947
EE++ + D++ E K + ++ L++ + A+ + +P T I+ + L
Sbjct: 939 EEEEEEEDEDKEKAEKEKLAAASAEKEKQLLSEKEKLDPATTNTIVIPGVDGTIITPSSL 998
Query: 948 L-PNAGLPI---SLPGVLGLSIPGAAPTVSATGLPVVPNDGAARAAALAAAINLQHNLAK 1003
L + +P+ ++ + G+S V ++ A + LAA + ++ N+ K
Sbjct: 999 LQTDPSVPVGQQAINQIFGIS-------------QVTSSEEAIKKLQLAAQLGMKGNIQK 1045
Query: 1004 IQADAMP---EHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYFPPSRIA 1060
+ P H+ ELEIND+ Q ARWKVTHK+ L I+ +T ITT+G +FPP++I
Sbjct: 1046 LNNQITPLNQTHFIEELEINDYSQQARWKVTHKDALLEITNFTNTTITTKGTFFPPNKIP 1105
Query: 1061 GPGERKLYLFIEGPTEQSVKRAKAELKRVLEDFTNQALSLPGGAQPGRYSVV 1112
PGERKLYL+IEGP++ SVK AK+++K++L++ + S G+YSV
Sbjct: 1106 APGERKLYLYIEGPSDASVKNAKSDIKKILDEVQSTHQST------GKYSVF 1151
|
ATP-dependent RNA helicase which may be involved spliceosome assembly and in nuclear splicing. Dictyostelium discoideum (taxid: 44689) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1112 | ||||||
| 255578793 | 1173 | dead box ATP-dependent RNA helicase, put | 0.847 | 0.803 | 0.836 | 0.0 | |
| 449439147 | 1118 | PREDICTED: DEAD-box ATP-dependent RNA he | 0.947 | 0.942 | 0.732 | 0.0 | |
| 449439149 | 1040 | PREDICTED: DEAD-box ATP-dependent RNA he | 0.911 | 0.975 | 0.772 | 0.0 | |
| 356497367 | 1104 | PREDICTED: DEAD-box ATP-dependent RNA he | 0.943 | 0.950 | 0.709 | 0.0 | |
| 357445503 | 1148 | DEAD box ATP-dependent RNA helicase [Med | 0.847 | 0.820 | 0.754 | 0.0 | |
| 356538821 | 1107 | PREDICTED: DEAD-box ATP-dependent RNA he | 0.860 | 0.864 | 0.772 | 0.0 | |
| 224065635 | 1112 | predicted protein [Populus trichocarpa] | 0.787 | 0.787 | 0.797 | 0.0 | |
| 449525702 | 1098 | PREDICTED: LOW QUALITY PROTEIN: DEAD-box | 0.929 | 0.941 | 0.711 | 0.0 | |
| 224083374 | 895 | predicted protein [Populus trichocarpa] | 0.799 | 0.993 | 0.804 | 0.0 | |
| 15218071 | 1166 | DEAD-box ATP-dependent RNA helicase 42 [ | 0.857 | 0.817 | 0.754 | 0.0 |
| >gi|255578793|ref|XP_002530253.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] gi|223530219|gb|EEF32123.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1579 bits (4089), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 801/958 (83%), Positives = 870/958 (90%), Gaps = 16/958 (1%)
Query: 162 RERSLSRSNRHRDENDESPREKLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQE 221
RE+S SRS+RHRDE+D SPR+K ED+ DKKEKKTREEELEDEQ++LDEEMEKRRRRVQE
Sbjct: 225 REQSTSRSSRHRDESDGSPRKKSGEDELDKKEKKTREEELEDEQKRLDEEMEKRRRRVQE 284
Query: 222 WQELKRKKEESERENRGDA-NVEEPKAGRNWTLDREDSDDEEVPQTGKSETDMDADEEPK 280
WQEL+RKKEESERE G+A N +EP+ G+ WTL+ E SDDEE P GKSET+MD DE K
Sbjct: 285 WQELRRKKEESEREKHGEASNADEPQTGKTWTLEGE-SDDEEAPLAGKSETNMDLDENAK 343
Query: 281 PSENQVGDAMLVDSDGGSAAPALQIG---AAEDEDIDPLDAFMNSMVLPEVEKLKNTVEP 337
P E ++GDAM+VDS G+A + G EDE+IDPLDAFMNSMVLPEVEKL N V
Sbjct: 344 PDE-EIGDAMVVDSYNGTATS--ENGDNDVIEDEEIDPLDAFMNSMVLPEVEKLNNAV-- 398
Query: 338 SFTDGNNVESKKMDRKGDRRSNGEQPKKSSNKSLGRIIPGEDSDSDYGDLENDEKPLEDE 397
T+ + ++ +K + + GE+ KK SNKSLGRIIPGEDSDSDYGDLENDE PL+DE
Sbjct: 399 -ITETVDENKVELKKKKEEGNEGEKLKKGSNKSLGRIIPGEDSDSDYGDLENDEGPLDDE 457
Query: 398 DDDEFMKRVKKTKAEKLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKI 457
DDDEFMKRVKKTKAEKLS+VDHSKIDY+PFRKNFYIEVKEI+RM PEEV+AYRKQLELKI
Sbjct: 458 DDDEFMKRVKKTKAEKLSVVDHSKIDYKPFRKNFYIEVKEISRMAPEEVAAYRKQLELKI 517
Query: 458 HGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGK 517
HGKDVPKP+KTWHQTGL SKI+ETI+KLNYEKPMPIQAQALP+IMSGRDCIG+AKTGSGK
Sbjct: 518 HGKDVPKPVKTWHQTGLASKILETIKKLNYEKPMPIQAQALPIIMSGRDCIGIAKTGSGK 577
Query: 518 TLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGG 577
TLAFVLPMLRHIKDQP V AGDGP+GLIMAPTRELVQQIHSDI+KFAKV+G+RCVPVYGG
Sbjct: 578 TLAFVLPMLRHIKDQPLVEAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGG 637
Query: 578 SGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQ 637
SGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQ
Sbjct: 638 SGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQ 697
Query: 638 ITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPE 697
ITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPE
Sbjct: 698 ITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPE 757
Query: 698 SDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTI 757
S+RFLRLLELLGEW EKGKILIFV SQ+KCDALFRDLLKHGYPCLSLHGAKDQTDRESTI
Sbjct: 758 SERFLRLLELLGEWNEKGKILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTI 817
Query: 758 SDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITF 817
SDFKSNVCNLLIATS+AARGLDVKEL+LV+NFD PNHYEDYVHRVGRTGRAGRKGCAITF
Sbjct: 818 SDFKSNVCNLLIATSIAARGLDVKELDLVVNFDVPNHYEDYVHRVGRTGRAGRKGCAITF 877
Query: 818 ISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAKVNQGLEQAHGTGYGGSGFKFNEE 877
ISEEDA+Y+PDLVKALELSEQVVP+DLKALAD FM KVNQGLEQAHGTGYGGSGFKFNEE
Sbjct: 878 ISEEDARYAPDLVKALELSEQVVPEDLKALADGFMVKVNQGLEQAHGTGYGGSGFKFNEE 937
Query: 878 EDEKRKAAKKAQAKEYGFEEDKSDSDDEDEGIRKAGGDISQQD-ALA-KISAIAAASKAS 935
EDEKR AAKKAQAKEYGFEEDKSDS+DEDEGIRKAGGDIS+ + ALA ++ AIAAASK++
Sbjct: 938 EDEKRIAAKKAQAKEYGFEEDKSDSEDEDEGIRKAGGDISRHNAALAQQLVAIAAASKST 997
Query: 936 AS-MPTPISAAQLLPNAGLPISLPGVLGLSIPGAAPTVSATGLPVVPNDGAARAAALAAA 994
S PTPI+A QLLP GLP+SLPGV+GL+IPG A V GLPV+ ND A+ A+AAA
Sbjct: 998 TSATPTPITAGQLLPPGGLPVSLPGVIGLTIPGPAAVVPGAGLPVINNDNTAK--AIAAA 1055
Query: 995 INLQHNLAKIQADAMPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYF 1054
INLQHNLAKIQADAMPEHYEAELEINDFPQNARWKVTHKETLGPIS+WTGAAITTRGQ+F
Sbjct: 1056 INLQHNLAKIQADAMPEHYEAELEINDFPQNARWKVTHKETLGPISDWTGAAITTRGQFF 1115
Query: 1055 PPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLEDFTNQALSLPGGAQPGRYSVV 1112
PP RI GPGERKLYLFIEGP+E SVK+AKAELKRVLED TNQALSLPGGAQPGRYSV+
Sbjct: 1116 PPGRIPGPGERKLYLFIEGPSETSVKKAKAELKRVLEDITNQALSLPGGAQPGRYSVI 1173
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449439147|ref|XP_004137349.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 42-like isoform 1 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1508 bits (3903), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 826/1128 (73%), Positives = 922/1128 (81%), Gaps = 74/1128 (6%)
Query: 38 DKEKEKDKHRDRDRRRDRDRDRDREKEREEKRERAREKEREREKRDRER-----EDRERE 92
D ++ K HR+RDR RD++R+ DR R++EKRDRER E + E
Sbjct: 12 DLDEPKKSHRERDRERDKERNGDRG--------------RDKEKRDRERSYDSEELVQHE 57
Query: 93 RERERERRERDR----EREKRERERDRDKEKDRERKSRDREKRRK--------------- 133
RE+E+ RR++D+ + E+ R + K+RD+EKR +
Sbjct: 58 REKEKPRRDKDKTRNRDDERDRGRDRRKERDRAREKTRDKEKRERAREKERDKRDRDRDR 117
Query: 134 ----------------------VESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNR 171
V S+ SDED ++RRR D + S SR N+
Sbjct: 118 ERRERERDREKERDKDRRKRREVVSEYSDEDSTEHGRKRRRRD--DDDHRAHESNSRINK 175
Query: 172 HRDENDESPREKLVEDDSDKKEKK-TREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKE 230
RD DESPREK ED DK E K TREEELE+EQ++LDEEMEKRRRRVQEWQ+ +R KE
Sbjct: 176 QRDHVDESPREKSEEDAFDKNETKPTREEELENEQKRLDEEMEKRRRRVQEWQKSRRLKE 235
Query: 231 ESERENRGDANVEEPKAGRNWTLDREDSDDEEVPQTGKSETDMDADEEPKPSENQVGDAM 290
E++ + +G+ N +EPK+G+ WTL+ E D+ E +ETDMD DE KP + G+ +
Sbjct: 236 EADGDKQGELNADEPKSGKTWTLEGESDDEYE--NARPTETDMDVDENSKPLVD--GEQI 291
Query: 291 LVDSDGGSAA----PALQIGA-AEDEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNV 345
V+ + G+ A P IG A D++IDPLDAFMNSMVLPEVEKL P+ D V
Sbjct: 292 AVNFNNGNEAAASPPQDSIGGDAADDEIDPLDAFMNSMVLPEVEKLNKVEVPTVNDDKIV 351
Query: 346 ESKKMDRKGDRRSNGEQPKKSSNKSLGRIIPGEDSDSDYGDLENDEKPLEDEDDDEFMKR 405
E K D+ D+ S G+ ++ SNKS+GRIIPGEDSD+DYGDLEND LEDEDDDEFMKR
Sbjct: 352 ELKSRDKPSDQ-SGGKAQRRISNKSMGRIIPGEDSDTDYGDLENDGDTLEDEDDDEFMKR 410
Query: 406 VKKTKAEKLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKP 465
VKKTKAEKLSIVDHSK+DYQPFRKNFYIEVKEI+RMT EEV+AYRKQLELKIHGKDVPKP
Sbjct: 411 VKKTKAEKLSIVDHSKMDYQPFRKNFYIEVKEISRMTLEEVAAYRKQLELKIHGKDVPKP 470
Query: 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPM 525
+KTWHQTGLTSKI+ETI+KLNYEKPMPIQAQALP++MSGRDCIG+AKTGSGKTLAFVLPM
Sbjct: 471 VKTWHQTGLTSKILETIKKLNYEKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPM 530
Query: 526 LRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQIS 585
LRHIKDQ PV GDGP+GLIMAPTRELVQQIHSDI+KF+KVMG+RCVPVYGGSGVAQQIS
Sbjct: 531 LRHIKDQSPVVPGDGPIGLIMAPTRELVQQIHSDIKKFSKVMGLRCVPVYGGSGVAQQIS 590
Query: 586 ELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI 645
ELKRG EIVVCTPGRMIDILCTS GKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI
Sbjct: 591 ELKRGAEIVVCTPGRMIDILCTSAGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI 650
Query: 646 RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLL 705
RPDRQTVLFSATFPRQVEILARKVLNKPVE+QVGGRSVVNKDI QLVEVRPE++RFLRLL
Sbjct: 651 RPDRQTVLFSATFPRQVEILARKVLNKPVEVQVGGRSVVNKDIAQLVEVRPENERFLRLL 710
Query: 706 ELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVC 765
ELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVC
Sbjct: 711 ELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVC 770
Query: 766 NLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKY 825
NLLIATS+AARGLDVKELELVINFD PNHYEDYVHRVGRTGRAGRKGCAITFI+EED++Y
Sbjct: 771 NLLIATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFIAEEDSRY 830
Query: 826 SPDLVKALELSEQVVPDDLKALADSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEKRKAA 885
+PDLVKALELSEQVVPDDL+ALADSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDE R+AA
Sbjct: 831 APDLVKALELSEQVVPDDLRALADSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAA 890
Query: 886 KKAQAKEYGFEEDKSDSDDEDEGIRKAGGDISQQDALAKISAIAAASKASA-SMPTPISA 944
KKAQAKEYGFEEDKSDS+DED+G+RKAGGDISQQ ALA+I+AIAAA+K SA S+ TP SA
Sbjct: 891 KKAQAKEYGFEEDKSDSEDEDDGVRKAGGDISQQAALAQIAAIAAATKVSAVSITTPSSA 950
Query: 945 AQLLPNAGLPISLPGVLGLSIPGAAPTVSATGLPVVPNDGAARAAALAAAINLQHNLAKI 1004
AQLLPN GLP+SLPGVLGL+IPG P + + LP V NDGAA AALAAA+NLQHNLAKI
Sbjct: 951 AQLLPNGGLPVSLPGVLGLTIPGTMPVIPSATLPTVTNDGAAARAALAAAMNLQHNLAKI 1010
Query: 1005 QADAMPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYFPPSRIAGPGE 1064
QA A+PEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQ+FPP +IAGPGE
Sbjct: 1011 QASAIPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQFFPPGKIAGPGE 1070
Query: 1065 RKLYLFIEGPTEQSVKRAKAELKRVLEDFTNQALSLPGGAQPGRYSVV 1112
RKLYLFIEGPTEQSVKRAKAELKRVLED TNQ LSLPGG+QPGRYSVV
Sbjct: 1071 RKLYLFIEGPTEQSVKRAKAELKRVLEDITNQTLSLPGGSQPGRYSVV 1118
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449439149|ref|XP_004137350.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 42-like isoform 2 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1496 bits (3874), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 808/1046 (77%), Positives = 894/1046 (85%), Gaps = 32/1046 (3%)
Query: 92 ERERERERRERDREREKRERERDRDKEKDRE------------------RKSRDREKRRK 133
E R + RR+ E +K RERDR+++K+R + +DR KRR+
Sbjct: 2 EEGRSKSRRDDLDEPKKSHRERDRERDKERNGDRDRDRERRERERDREKERDKDRRKRRE 61
Query: 134 VESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVEDDSDKKE 193
V S+ SDED ++RRR D + S SR N+ RD DESPREK ED DK E
Sbjct: 62 VVSEYSDEDSTEHGRKRRRRD--DDDHRAHESNSRINKQRDHVDESPREKSEEDAFDKNE 119
Query: 194 KK-TREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGDANVEEPKAGRNWT 252
K TREEELE+EQ++LDEEMEKRRRRVQEWQ+ +R KEE++ + +G+ N +EPK+G+ WT
Sbjct: 120 TKPTREEELENEQKRLDEEMEKRRRRVQEWQKSRRLKEEADGDKQGELNADEPKSGKTWT 179
Query: 253 LDREDSDDEEVPQTGKSETDMDADEEPKPSENQVGDAMLVDSDGGSAA----PALQIGA- 307
L+ E D+ E +ETDMD DE KP + G+ + V+ + G+ A P IG
Sbjct: 180 LEGESDDEYE--NARPTETDMDVDENSKPLVD--GEQIAVNFNNGNEAAASPPQDSIGGD 235
Query: 308 AEDEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMDRKGDRRSNGEQPKKSS 367
A D++IDPLDAFMNSMVLPEVEKL P+ D VE K D+ D+ S G+ ++ S
Sbjct: 236 AADDEIDPLDAFMNSMVLPEVEKLNKVEVPTVNDDKIVELKSRDKPSDQ-SGGKAQRRIS 294
Query: 368 NKSLGRIIPGEDSDSDYGDLENDEKPLEDEDDDEFMKRVKKTKAEKLSIVDHSKIDYQPF 427
NKS+GRIIPGEDSD+DYGDLEND LEDEDDDEFMKRVKKTKAEKLSIVDHSK+DYQPF
Sbjct: 295 NKSMGRIIPGEDSDTDYGDLENDGDTLEDEDDDEFMKRVKKTKAEKLSIVDHSKMDYQPF 354
Query: 428 RKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNY 487
RKNFYIEVKEI+RMT EEV+AYRKQLELKIHGKDVPKP+KTWHQTGLTSKI+ETI+KLNY
Sbjct: 355 RKNFYIEVKEISRMTLEEVAAYRKQLELKIHGKDVPKPVKTWHQTGLTSKILETIKKLNY 414
Query: 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547
EKPMPIQAQALP++MSGRDCIG+AKTGSGKTLAFVLPMLRHIKDQ PV GDGP+GLIMA
Sbjct: 415 EKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQSPVVPGDGPIGLIMA 474
Query: 548 PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCT 607
PTRELVQQIHSDI+KF+KVMG+RCVPVYGGSGVAQQISELKRG EIVVCTPGRMIDILCT
Sbjct: 475 PTRELVQQIHSDIKKFSKVMGLRCVPVYGGSGVAQQISELKRGAEIVVCTPGRMIDILCT 534
Query: 608 SGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILAR 667
S GKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILAR
Sbjct: 535 SAGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILAR 594
Query: 668 KVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKC 727
KVLNKPVE+QVGGRSVVNKDI QLVEVRPE++RFLRLLELLGEWYEKGKILIFVHSQEKC
Sbjct: 595 KVLNKPVEVQVGGRSVVNKDIAQLVEVRPENERFLRLLELLGEWYEKGKILIFVHSQEKC 654
Query: 728 DALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVI 787
DALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS+AARGLDVKELELVI
Sbjct: 655 DALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAARGLDVKELELVI 714
Query: 788 NFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKAL 847
NFD PNHYEDYVHRVGRTGRAGRKGCAITFI+EED++Y+PDLVKALELSEQVVPDDL+AL
Sbjct: 715 NFDVPNHYEDYVHRVGRTGRAGRKGCAITFIAEEDSRYAPDLVKALELSEQVVPDDLRAL 774
Query: 848 ADSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEEDKSDSDDEDE 907
ADSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDE R+AAKKAQAKEYGFEEDKSDS+DED+
Sbjct: 775 ADSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYGFEEDKSDSEDEDD 834
Query: 908 GIRKAGGDISQQDALAKISAIAAASKASA-SMPTPISAAQLLPNAGLPISLPGVLGLSIP 966
G+RKAGGDISQQ ALA+I+AIAAA+K SA S+ TP SAAQLLPN GLP+SLPGVLGL+IP
Sbjct: 835 GVRKAGGDISQQAALAQIAAIAAATKVSAVSITTPSSAAQLLPNGGLPVSLPGVLGLTIP 894
Query: 967 GAAPTVSATGLPVVPNDGAARAAALAAAINLQHNLAKIQADAMPEHYEAELEINDFPQNA 1026
G P + + LP V NDGAA AALAAA+NLQHNLAKIQA A+PEHYEAELEINDFPQNA
Sbjct: 895 GTMPVIPSATLPTVTNDGAAARAALAAAMNLQHNLAKIQASAIPEHYEAELEINDFPQNA 954
Query: 1027 RWKVTHKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAEL 1086
RWKVTHKETLGPISEWTGAAITTRGQ+FPP +IAGPGERKLYLFIEGPTEQSVKRAKAEL
Sbjct: 955 RWKVTHKETLGPISEWTGAAITTRGQFFPPGKIAGPGERKLYLFIEGPTEQSVKRAKAEL 1014
Query: 1087 KRVLEDFTNQALSLPGGAQPGRYSVV 1112
KRVLED TNQ LSLPGG+QPGRYSVV
Sbjct: 1015 KRVLEDITNQTLSLPGGSQPGRYSVV 1040
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356497367|ref|XP_003517532.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 42-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1484 bits (3841), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 805/1134 (70%), Positives = 921/1134 (81%), Gaps = 85/1134 (7%)
Query: 33 DEDKHDKEKEKDKHRDRDRRR---DRDRDRDREKEREEKRERAREKEREREKRDREREDR 89
DE KH KE + +D D +R DRDR +R K++ + R R REK +R
Sbjct: 2 DEGKHKSRKENHEVKDGDSKRSHRDRDRTGERGKDKNDGRHRDREKRDRESRRPERERST 61
Query: 90 ERERERERERRERDREREKRERERDRDKEKDRER-------------------------- 123
+ E +R+R +R + + +RER RDK+++R+R
Sbjct: 62 DSEDRYDRDREKRKDKDKDVDRERSRDKKRERDRTDRVREKERERERKEDKERIRERERE 121
Query: 124 ------------------KSRDREKRRKVESDDSD-EDKDRDRKRRRRHDDDHKERVRER 164
+ R REKRR+V+SD SD E K++DRKR R+ D D+K R RER
Sbjct: 122 RERRDHEREKEKERERGRRVRGREKRREVDSDCSDGESKEQDRKRHRKEDGDYK-RERER 180
Query: 165 SLSRSNRHRDENDESPREKLVEDDSDKKE---KKTREEELEDEQRKLDEEMEKRRRRVQE 221
S+S+ +R +E++ SPR+K EDDSD K+ K TREEE+EDEQ++LDEEMEKRRRRVQE
Sbjct: 181 SVSKPSRKSEEHEGSPRKKSGEDDSDTKDEEKKPTREEEMEDEQKRLDEEMEKRRRRVQE 240
Query: 222 WQELKRKKEESERENRGDANVEEPKAGRNWTLDREDSDDEEVPQTGKSETDMDADEEPKP 281
WQEL+RKKEE+ERE +G+A+ EP++G+ WTL+ E SDDEE TGK +T MD DE+ KP
Sbjct: 241 WQELRRKKEEAEREKQGEASANEPESGKTWTLEGE-SDDEEGLGTGK-QTGMDVDEDDKP 298
Query: 282 SENQVGDAMLVDSDGGSAAPALQ---IGAAEDEDIDPLDAFMNSMVLPEVEKLKNTVEPS 338
++ + D M+VD+D G+ A LQ GA EDE+IDPLDAFMNSMVLPEVEKL N V S
Sbjct: 299 ADEEPKDVMVVDTDNGTIASDLQDGTAGAPEDEEIDPLDAFMNSMVLPEVEKLNNAVTSS 358
Query: 339 FTDGNNVESKKMDRKGDRRSNGEQPKKSSNKSLGRIIPGEDSDSDYGDLENDEKPLEDED 398
+D ++ K D KG+ ++ G Q +K SNKS+GRIIPGE+SDSDY D E ++ PL DED
Sbjct: 359 LSD-KAIDVKPKD-KGNGQNRGAQSRKGSNKSIGRIIPGEESDSDYADDEVEKDPL-DED 415
Query: 399 DDEFMKRVKKTKAEKLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIH 458
DDEFMKRVKKTKAEKLS+VDHSKIDY+PF+KNFYIEVKEI++MTPEE + YRKQLELKIH
Sbjct: 416 DDEFMKRVKKTKAEKLSLVDHSKIDYEPFKKNFYIEVKEISKMTPEEAAVYRKQLELKIH 475
Query: 459 GKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKT 518
GKDVPKPIK+WHQTGL SKI+ETI+K+N+E PMPIQAQALPVIMSGRDCIG+AKTGSGKT
Sbjct: 476 GKDVPKPIKSWHQTGLPSKILETIKKMNFEMPMPIQAQALPVIMSGRDCIGIAKTGSGKT 535
Query: 519 LAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGS 578
LAFVLPMLRHIKDQPPV AGDGP+GLIMAPTRELVQQIHSDI+KFAKV+G+RCVPVYGGS
Sbjct: 536 LAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGLRCVPVYGGS 595
Query: 579 GVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQI 638
GVAQQISELKRG EIVVCTPGRMIDILCTS GKITNLRRVTYLVMDEADRMFDMGFEPQI
Sbjct: 596 GVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQI 655
Query: 639 TRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPES 698
TRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRP++
Sbjct: 656 TRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPDN 715
Query: 699 DRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTIS 758
+RFLRLLE+LGEWYEKGKILIFVHSQEKCD+LF+DLL+HGYPCLSLHGAKDQTDRESTIS
Sbjct: 716 ERFLRLLEILGEWYEKGKILIFVHSQEKCDSLFKDLLRHGYPCLSLHGAKDQTDRESTIS 775
Query: 759 DFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFI 818
DFKSNVCNLL+ATS+AARGLDVKELELVINFD PNHYEDYVHRVGRTGRAGRKGCAITFI
Sbjct: 776 DFKSNVCNLLVATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFI 835
Query: 819 SEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAKVNQGLEQAHGTGYGGSGFKFNEEE 878
SEE+A+Y+PDL+KALELSEQ+VP+DLKALA SFMAKVNQGLEQAHGTGYGGSGFKFNEEE
Sbjct: 836 SEEEARYAPDLLKALELSEQIVPNDLKALAGSFMAKVNQGLEQAHGTGYGGSGFKFNEEE 895
Query: 879 DEKRKAAKKAQAKEYGFEEDKSDSDDEDEGIRKAGGDISQQDALAKISAIAAASKASASM 938
DE RKAAKKAQAKEYGFEE+KSDS+DEDEGIRKAGGDISQ A A+I IAA + ++
Sbjct: 896 DEVRKAAKKAQAKEYGFEEEKSDSEDEDEGIRKAGGDISQHSAFAQI--IAATKGNAPAL 953
Query: 939 PTPISAAQLLPNAGLPISLPGVLGLSIPGAAPTVSATGLPVVPNDGAARAAALAAAINLQ 998
PTPI LLP+ + LPG TGLP+ NDGAARAAA AA+NLQ
Sbjct: 954 PTPI----LLPSLQV---LPG---------------TGLPLPANDGAARAAA-IAALNLQ 990
Query: 999 HNLAKIQADAMPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYFPPSR 1058
L KI+++A+PEHYEAELEINDFPQNARWKVTHKETLGPISEW+GAAITTRGQ+FPP +
Sbjct: 991 DKLDKIRSEALPEHYEAELEINDFPQNARWKVTHKETLGPISEWSGAAITTRGQFFPPGK 1050
Query: 1059 IAGPGERKLYLFIEGPTEQSVKRAKAELKRVLEDFTNQALSLPGGAQPGRYSVV 1112
I GPGERKLYLFIEGPTE SVK AKA+LKRVLED TNQAL LPGG QPG+YSVV
Sbjct: 1051 IPGPGERKLYLFIEGPTEHSVKSAKADLKRVLEDITNQALQLPGGTQPGKYSVV 1104
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357445503|ref|XP_003593029.1| DEAD box ATP-dependent RNA helicase [Medicago truncatula] gi|355482077|gb|AES63280.1| DEAD box ATP-dependent RNA helicase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1474 bits (3817), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 748/991 (75%), Positives = 846/991 (85%), Gaps = 49/991 (4%)
Query: 130 KRRKVESDDSD-EDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVEDD 188
K R V+S++SD E ++R+RKR ++ DDD+K R +E+S +S+R + D SPR K DD
Sbjct: 195 KHRDVDSENSDGELRERNRKRHKKDDDDYKRREKEKSSGKSSRKIEVVDGSPRRKSDGDD 254
Query: 189 SDKKEK---KTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGDANVEEP 245
SD KEK +TREEE+E+EQ++LD+EMEKRRR+VQ WQEL+R +EE++R+ +G+A+V E
Sbjct: 255 SDSKEKAKKQTREEEMEEEQKRLDDEMEKRRRKVQAWQELRRLEEEAQRKKQGEASVVEA 314
Query: 246 KAGRNWTLDREDSDDEEVPQTGKSETDMDADEEPKPSENQVGDAMLVDSDGGSAAPALQ- 304
++G+ WTLD E+SDDE+ TGK T MD DE+ KP++N+ D+M VD D G+ A LQ
Sbjct: 315 ESGKKWTLDGEESDDED--GTGK-HTSMDIDEDDKPADNEPTDSMAVDVDKGTVASDLQN 371
Query: 305 --IGAAEDEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTD-GNNVESKKMDRKGDRRSNGE 361
GA +++IDPLDAFMNSMVLPEVEKL N V + D +++ K KG NG
Sbjct: 372 GDAGAPAEDEIDPLDAFMNSMVLPEVEKLNNAVNSAPPDKASDLNPKD---KGAESRNGG 428
Query: 362 QPKKSSNKSLGRIIPGEDSDSDYGDLENDEKPLEDEDDDEFMKRVKKTKAEKLSIVDHSK 421
Q +K SNKS+GRIIPGE+SDSDY D E + PL DEDDDEFMKRVKKTKAEKLSIVDHSK
Sbjct: 429 QSRKGSNKSIGRIIPGEESDSDYADPEVEGDPL-DEDDDEFMKRVKKTKAEKLSIVDHSK 487
Query: 422 IDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMET 481
IDY PFRKNFYIEVKE+++MT EEV+ YRKQLELKIHGKDVPKP+K+W+QTGLTSKI++T
Sbjct: 488 IDYIPFRKNFYIEVKEVSKMTVEEVAFYRKQLELKIHGKDVPKPVKSWNQTGLTSKILDT 547
Query: 482 IRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGP 541
I+K N+EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPV GDGP
Sbjct: 548 IKKANFEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVVVGDGP 607
Query: 542 VGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM 601
+GLIMAPTRELVQQIHSDIRKF KVMG+RCVPVYGGSGVAQQISELKRGTEIVVCTPGRM
Sbjct: 608 IGLIMAPTRELVQQIHSDIRKFTKVMGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM 667
Query: 602 IDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQ 661
IDILCTS GKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQ
Sbjct: 668 IDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQ 727
Query: 662 VEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFV 721
VEILARKVLNKPVEIQVGGRSVVNKDI QLVEVRPE++RFLRLLELLGEWYEKGKIL+FV
Sbjct: 728 VEILARKVLNKPVEIQVGGRSVVNKDIAQLVEVRPENERFLRLLELLGEWYEKGKILVFV 787
Query: 722 HSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVK 781
HSQ+KCDALF+DL+KHGYPCLSLHGAKDQTDRESTISDFKSNVCNLL+ATS+AARGLDVK
Sbjct: 788 HSQDKCDALFKDLMKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLVATSIAARGLDVK 847
Query: 782 ELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVP 841
ELELVINFD PNHYEDYVHRVGRTGRAGRKGCAITFISEEDA+Y+PDLVKALELSEQ+VP
Sbjct: 848 ELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLVKALELSEQIVP 907
Query: 842 DDLKALADSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEEDKSD 901
DDLK+LA+ FMAKV QGLEQAHGTGYGG+GFKFNEEEDE R+AAKKAQAKEYGFEEDKSD
Sbjct: 908 DDLKSLAEGFMAKVTQGLEQAHGTGYGGTGFKFNEEEDEVRRAAKKAQAKEYGFEEDKSD 967
Query: 902 SDDEDEGIRKAGGDISQQDALAKISAIAAASKASASMPTPISAAQLLPNAGLPISLPGVL 961
S+DEDEGIRKAGGDISQ TPISAAQL+P G+P
Sbjct: 968 SEDEDEGIRKAGGDISQHH-------------------TPISAAQLIPIGGIP------- 1001
Query: 962 GLSIPGAAPTVSATGLPVVPNDGAARAAALAAAINLQHNLAKIQADAMPEHYEAELEIND 1021
S+ P + + + NDGA RAA AA+NLQ N+AKIQ++A+PEHYEAELEIND
Sbjct: 1002 --SVSTVLPVIGS----IATNDGATRAA--LAAMNLQQNIAKIQSEALPEHYEAELEIND 1053
Query: 1022 FPQNARWKVTHKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKR 1081
FPQNARWKVTHKETLGPISEWTGAAITTRGQ+FPP ++AGPG+RKLYLFIEGP+EQSVKR
Sbjct: 1054 FPQNARWKVTHKETLGPISEWTGAAITTRGQFFPPGKVAGPGDRKLYLFIEGPSEQSVKR 1113
Query: 1082 AKAELKRVLEDFTNQALSLPGGAQPGRYSVV 1112
AKAELKRVLED T+QAL LPGG QPG+YSVV
Sbjct: 1114 AKAELKRVLEDITHQALQLPGGTQPGKYSVV 1144
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356538821|ref|XP_003537899.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 42-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1455 bits (3766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 769/995 (77%), Positives = 867/995 (87%), Gaps = 38/995 (3%)
Query: 125 SRDREKRRKVESDDSD-EDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREK 183
+R REKRR+V+SD SD E K+RDRKR R+ D D+K R RERS+S+S+R +E++ SPR+K
Sbjct: 144 ARGREKRREVDSDCSDGESKERDRKRHRKEDGDYK-RERERSVSKSSRKSEEHEGSPRKK 202
Query: 184 LVEDDSDKKE---KKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGDA 240
DDSD K+ K TREEE+EDEQ++LDEEMEKRRRRVQEWQEL+RK+EE+ERE G+A
Sbjct: 203 SGGDDSDTKDEEKKPTREEEMEDEQKRLDEEMEKRRRRVQEWQELRRKREEAEREKHGEA 262
Query: 241 NVEEPKAGRNWTLDREDSDDEEVPQTGKSETDMDADEEPKPSENQVGDAMLVDSDGGSAA 300
+ EP++G+ WTL+ E SDDEE P TGK +T MD DE+ KP++ + D M+VD+ G+ A
Sbjct: 263 SANEPESGKTWTLEGE-SDDEEGPGTGK-QTGMDVDEDDKPADKEPKDVMVVDTVNGTIA 320
Query: 301 PALQ---IGAAEDEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMDRKGDRR 357
LQ GA EDE+IDPLDAFMNSMVLPEVEKL N V S + G ++ K D KG+ +
Sbjct: 321 SDLQDGPAGAPEDEEIDPLDAFMNSMVLPEVEKLNNAVTSSLS-GKAIDVKPKD-KGNEQ 378
Query: 358 SNGEQPKKSSNKSLGRIIPGEDSDSDYGDLENDEKPLEDEDDDEFMKRVKKTKAEKLSIV 417
+ G Q +K SNKS+GRIIPGE+SDSDY D E ++ PL DEDDDEFMKRVKKTKAEKLS+V
Sbjct: 379 NRGAQSRKVSNKSIGRIIPGEESDSDYADDEVEKDPL-DEDDDEFMKRVKKTKAEKLSLV 437
Query: 418 DHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSK 477
DHSKI Y+PF+KNFYIEVKE+++MTPEE + YRKQLELKIHGKDVPKPIK+WHQTGL SK
Sbjct: 438 DHSKIVYEPFKKNFYIEVKEVSKMTPEESAVYRKQLELKIHGKDVPKPIKSWHQTGLASK 497
Query: 478 IMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAA 537
I+ETI+K+N+EKPMPIQAQALPVIMSGRDCIG+AKTGSGKTLAFVLPMLRHIKDQPPV A
Sbjct: 498 ILETIKKMNFEKPMPIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVA 557
Query: 538 GDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCT 597
GDGP+GLIMAPTRELVQQIHSDI+KFAKV+G+RCVPVYGGSGVAQQISELKRG EIVVCT
Sbjct: 558 GDGPIGLIMAPTRELVQQIHSDIKKFAKVLGLRCVPVYGGSGVAQQISELKRGAEIVVCT 617
Query: 598 PGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSAT 657
PGRMIDILCTS GKITNL RVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSAT
Sbjct: 618 PGRMIDILCTSSGKITNLHRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSAT 677
Query: 658 FPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKI 717
FPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRP+++RFLRLLE+LGEWYEKGKI
Sbjct: 678 FPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPDNERFLRLLEILGEWYEKGKI 737
Query: 718 LIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARG 777
LIFVHSQEKCD+LF+DLL+HGYPCLSLHGAKDQTDRESTISDFKSNVCNLL+ATS+AARG
Sbjct: 738 LIFVHSQEKCDSLFKDLLRHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLVATSIAARG 797
Query: 778 LDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSE 837
LDVKELELVINFD PNHYEDYVHRVGRTGRAGRKGCAITFISEE+A+Y+PDL+KALELSE
Sbjct: 798 LDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEEARYAPDLLKALELSE 857
Query: 838 QVVPDDLKALADSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEE 897
Q VP+DLKALA SFMAKVNQGLEQAHGTGYGGSGFKFNEEEDE RKAAKKAQAKEYGFEE
Sbjct: 858 QTVPNDLKALAGSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRKAAKKAQAKEYGFEE 917
Query: 898 DKSDSDDEDEGIRKAGGDISQQDALAKISAIAAASKASASMPTPISAAQLLPNAGLPISL 957
+KSDS+DEDEGIRKAGGDISQ A A+I IAA ++PTP+ LLP+ LP+ L
Sbjct: 918 EKSDSEDEDEGIRKAGGDISQHSAFAQI--IAATKGNVPALPTPM----LLPS--LPV-L 968
Query: 958 PGVLGLSIPGAAPTVSATGLPVVPNDGAARAAALAAAINLQHNLAKIQADAMPEHYEAEL 1017
PG TGLP+ N+GAARAAA AA+NLQ L KI+++A+PEHYEAEL
Sbjct: 969 PG---------------TGLPLPANEGAARAAA-IAALNLQDKLDKIRSEALPEHYEAEL 1012
Query: 1018 EINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQ 1077
EINDFPQNARWKVTHKETLGPISEW+GAAITTRGQ+FPP +I GPGERKLYLFIEGPTE
Sbjct: 1013 EINDFPQNARWKVTHKETLGPISEWSGAAITTRGQFFPPGKIPGPGERKLYLFIEGPTEH 1072
Query: 1078 SVKRAKAELKRVLEDFTNQALSLPGGAQPGRYSVV 1112
SVK AKA+LKRVLED TNQA+ LPGG QPG+YSVV
Sbjct: 1073 SVKSAKADLKRVLEDITNQAMQLPGGTQPGKYSVV 1107
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224065635|ref|XP_002301895.1| predicted protein [Populus trichocarpa] gi|222843621|gb|EEE81168.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1444 bits (3738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 733/919 (79%), Positives = 795/919 (86%), Gaps = 43/919 (4%)
Query: 199 EELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGD-ANVEEPKAGRNWTLDRED 257
E LE EQ+KLDEEMEKRRRRVQEWQEL+RKKEE+ERE G+ A+V EPK G+ WTL+ E
Sbjct: 232 ERLEQEQKKLDEEMEKRRRRVQEWQELRRKKEETEREKHGEEADVNEPKTGKTWTLEGE- 290
Query: 258 SDDEEVPQTGKSETDMDADEEPKPSENQVGDAMLVDSDGGSAAPALQIGAAEDEDIDPLD 317
SDDEE P TGKSETDMD +E KP E E+IDPLD
Sbjct: 291 SDDEEAPPTGKSETDMDLEENAKPDE---------------------------EEIDPLD 323
Query: 318 AFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMDRKGDRRSNGEQPKKSSNKSLGRIIPG 377
AFMNSMVLPEVEKL +T+ D N + K D+K + R NGEQ KK S+KSLGRI+PG
Sbjct: 324 AFMNSMVLPEVEKLNSTLVTHTADDNKTDLKNKDKK-EERINGEQRKKGSHKSLGRIVPG 382
Query: 378 EDSDSDYGDLENDEKPLEDEDDDEFMKRVKKTKAEKLSIVDHSKIDYQPFRKNFYIEVKE 437
EDSDSDYGDLEN E PLE+EDDDEFMKRVKKTKAEKLSIVDHSKIDY PFRKNFYIEVKE
Sbjct: 383 EDSDSDYGDLENGEDPLEEEDDDEFMKRVKKTKAEKLSIVDHSKIDYNPFRKNFYIEVKE 442
Query: 438 IARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQA 497
I+RMTPEEV A RK+LELK+HGKDVPKPIKTWHQTGLTSKI+ETI+KLNYEKPM IQAQA
Sbjct: 443 ISRMTPEEVVACRKELELKLHGKDVPKPIKTWHQTGLTSKILETIKKLNYEKPMTIQAQA 502
Query: 498 LPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIH 557
LP+IMSGRDCIG+AKTGSGKTLAFVLPMLRHIKDQPPV AG+GP+GL+MAPTRELVQQIH
Sbjct: 503 LPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVEAGEGPIGLVMAPTRELVQQIH 562
Query: 558 SDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRR 617
SDI+KFAK + +RCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRR
Sbjct: 563 SDIKKFAKALSIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRR 622
Query: 618 VTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQ 677
VTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVE LARKVLNKPVEIQ
Sbjct: 623 VTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVETLARKVLNKPVEIQ 682
Query: 678 VGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH 737
VGGRSVVNKDITQLVE+R E R+LRLLELLGEWY+KGKILIFV SQ+KCD+LFR+LLK
Sbjct: 683 VGGRSVVNKDITQLVELRTEDQRWLRLLELLGEWYQKGKILIFVQSQDKCDSLFRNLLKF 742
Query: 738 GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYED 797
GYPCLSLHGAKDQTDRESTISDFK+NVCNL+IATSVAARGLDVK+LELVIN+DAPNHYED
Sbjct: 743 GYPCLSLHGAKDQTDRESTISDFKTNVCNLMIATSVAARGLDVKDLELVINYDAPNHYED 802
Query: 798 YVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAKVNQ 857
YVHRVGRTGRAGRKGCAITFISE+DA+Y+PDLVKALELSEQVVP DLKALAD FMAKVNQ
Sbjct: 803 YVHRVGRTGRAGRKGCAITFISEDDARYAPDLVKALELSEQVVPQDLKALADGFMAKVNQ 862
Query: 858 GLEQAHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEEDKSDSDDEDEGIRKAGGDIS 917
GLEQAHGTGYGGSGFKFNEEEDEKR AAKKAQAKEYG+E++KSDS+DEDE +RK+ GD+S
Sbjct: 863 GLEQAHGTGYGGSGFKFNEEEDEKRMAAKKAQAKEYGYEDEKSDSEDEDEVVRKSVGDVS 922
Query: 918 QQDALAKISAIAAASKASASMPTPI---SAAQLLPNAGLPISLPGVLGLSIPGAAPTVSA 974
QQ A A+ + MP P S AQLL N GLP+ P PG A VS
Sbjct: 923 QQ-TALAQQIAALAAVSKVPMPAPPISHSVAQLLSNGGLPVP-PN------PGPA-VVSV 973
Query: 975 TGLPVVPND-GAARAAALAAAINLQHNLAKIQADAMPEHYEAELEINDFPQNARWKVTHK 1033
TGLP VPN+ GAARAAALAAA+NLQHNLA+IQADAMPEHYEAELEINDFPQNARWKVTHK
Sbjct: 974 TGLPFVPNNEGAARAAALAAAMNLQHNLARIQADAMPEHYEAELEINDFPQNARWKVTHK 1033
Query: 1034 ETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLEDF 1093
ETLGPIS+WTGAAITTRGQ+FPP ++ GPGERKLYLFIEGPTEQSVKRAKA+LKRVLED
Sbjct: 1034 ETLGPISDWTGAAITTRGQFFPPGKVPGPGERKLYLFIEGPTEQSVKRAKADLKRVLEDI 1093
Query: 1094 TNQALSLPGGAQPGRYSVV 1112
TNQ LPGG QPG+YSVV
Sbjct: 1094 TNQTYQLPGGTQPGKYSVV 1112
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449525702|ref|XP_004169855.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 42-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1443 bits (3736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 803/1128 (71%), Positives = 900/1128 (79%), Gaps = 94/1128 (8%)
Query: 38 DKEKEKDKHRDRDRRRDRDRDRDREKEREEKRERAREKEREREKRDRER-----EDRERE 92
D ++ K HR+RDR RD++R+ DR R++EKRDRER E + E
Sbjct: 12 DLDEPKKSHRERDRERDKERNGDRG--------------RDKEKRDRERSYDSEELVQHE 57
Query: 93 RERERERRERDR----EREKRERERDRDKEKDRERKSRDREKRRK--------------- 133
RE+E+ RR++D+ + E+ R + K+RD+EKR +
Sbjct: 58 REKEKPRRDKDKTRNRDDERDRGRDRRKERDRAREKTRDKEKRERAREKERDKRDRDRDR 117
Query: 134 ----------------------VESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNR 171
V S+ SDED ++RRR D + S SR N+
Sbjct: 118 ERRERERDREKERDKDRRKRREVVSEYSDEDSTEHGRKRRRRD--DDDHRAHESNSRINK 175
Query: 172 HRDENDESPREKLVEDDSDKKEKK-TREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKE 230
RD DESP K ED DK E K TREEELE+EQ++LDEEMEKRRRRVQEWQ+ +R KE
Sbjct: 176 QRDHVDESPXRKSEEDAFDKNEXKPTREEELENEQKRLDEEMEKRRRRVQEWQKSRRLKE 235
Query: 231 ESERENRGDANVEEPKAGRNWTLDREDSDDEEVPQTGKSETDMDADEEPKPSENQVGDAM 290
E++ + +G+ N +EPK+G+ WTL+ E D+ E +ETDMD DE KP + G+ +
Sbjct: 236 EADGDKQGELNADEPKSGKTWTLEGESDDEYE--NARPTETDMDVDENSKPLVD--GEQI 291
Query: 291 LVDSDGGSAA----PALQIGA-AEDEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNV 345
V+ + G+ A P IG A D++IDPLDAFMNSMVLPEVEKL P+ D V
Sbjct: 292 AVNFNNGNEAAASPPQDSIGGDAADDEIDPLDAFMNSMVLPEVEKLNKVEVPTVNDDKIV 351
Query: 346 ESKKMDRKGDRRSNGEQPKKSSNKSLGRIIPGEDSDSDYGDLENDEKPLEDEDDDEFMKR 405
E K D+ D +S G+ ++ SNKS+GRIIPGEDSD+DYGDLEND LEDEDDDEFMKR
Sbjct: 352 ELKSRDKPSD-QSGGKAQRRISNKSMGRIIPGEDSDTDYGDLENDGDTLEDEDDDEFMKR 410
Query: 406 VKKTKAEKLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKP 465
VKKTKAEKLSIVDHSK+DYQPFRKNFYIEVKEI+RMT EEV+AYRKQLELKIHGKDVPKP
Sbjct: 411 VKKTKAEKLSIVDHSKMDYQPFRKNFYIEVKEISRMTLEEVAAYRKQLELKIHGKDVPKP 470
Query: 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPM 525
+KTWHQTGLTSKI+ETI+KLNYEKPMPIQAQALP++MSGRDCIG+AKTGSGKTLAFVLPM
Sbjct: 471 VKTWHQTGLTSKILETIKKLNYEKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPM 530
Query: 526 LRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQIS 585
LRHIKDQ PV GDGP+GLIMAPTRELVQQIHSDI+KF+KVMG+RCVPVYGGSGVAQQIS
Sbjct: 531 LRHIKDQSPVVPGDGPIGLIMAPTRELVQQIHSDIKKFSKVMGLRCVPVYGGSGVAQQIS 590
Query: 586 ELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI 645
ELKRG EIVVCTPGRMIDILCTS GKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI
Sbjct: 591 ELKRGAEIVVCTPGRMIDILCTSAGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI 650
Query: 646 RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLL 705
RPDRQTVLFSATFPRQVEILARKVLNKPVE+QVGGRSVVNKDI QLVEVRPE++RFLRLL
Sbjct: 651 RPDRQTVLFSATFPRQVEILARKVLNKPVEVQVGGRSVVNKDIAQLVEVRPENERFLRLL 710
Query: 706 ELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVC 765
ELLGEWYEKGKILIFVHSQEK +KDQTDRESTISDFKSNVC
Sbjct: 711 ELLGEWYEKGKILIFVHSQEK--------------------SKDQTDRESTISDFKSNVC 750
Query: 766 NLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKY 825
NLLIATS+AARGLDVKELELVINFD PNHYEDYVHRVGRTGRAGRKGCAITFI+EED++Y
Sbjct: 751 NLLIATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFIAEEDSRY 810
Query: 826 SPDLVKALELSEQVVPDDLKALADSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEKRKAA 885
+PDLVKALELSEQVVPDDL+ALADSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDE R+AA
Sbjct: 811 APDLVKALELSEQVVPDDLRALADSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAA 870
Query: 886 KKAQAKEYGFEEDKSDSDDEDEGIRKAGGDISQQDALAKISAIAAASKASA-SMPTPISA 944
KKAQAKEYGFEEDKSDS+DED+G+RKAGGDISQQ ALA+I+AIAAA+K SA S+ TP SA
Sbjct: 871 KKAQAKEYGFEEDKSDSEDEDDGVRKAGGDISQQAALAQIAAIAAATKVSAVSITTPSSA 930
Query: 945 AQLLPNAGLPISLPGVLGLSIPGAAPTVSATGLPVVPNDGAARAAALAAAINLQHNLAKI 1004
AQLLPN GLP+SLPGVLGL+IPG P + + LP V NDGAA AALAAA+NLQHNLAKI
Sbjct: 931 AQLLPNGGLPVSLPGVLGLTIPGTMPVIPSATLPTVTNDGAAARAALAAAMNLQHNLAKI 990
Query: 1005 QADAMPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYFPPSRIAGPGE 1064
QA A+PEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQ+FPP +IAGPGE
Sbjct: 991 QASAIPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQFFPPGKIAGPGE 1050
Query: 1065 RKLYLFIEGPTEQSVKRAKAELKRVLEDFTNQALSLPGGAQPGRYSVV 1112
RKLYLFIEGPTEQSVKRAKAELKRVLED TNQ LSLPGG+QPGRYSVV
Sbjct: 1051 RKLYLFIEGPTEQSVKRAKAELKRVLEDITNQTLSLPGGSQPGRYSVV 1098
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224083374|ref|XP_002307002.1| predicted protein [Populus trichocarpa] gi|222856451|gb|EEE93998.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1427 bits (3694), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 730/907 (80%), Positives = 791/907 (87%), Gaps = 18/907 (1%)
Query: 212 MEKRRRRVQEWQELKRKKEESERENRGD-ANVEEPKAGRNWTLDREDSDDEEVPQTGKSE 270
MEKRRRRVQEWQEL+RKKEE+E E G+ ANV+E K+G+ WTL+ E SDDEE P TGKS+
Sbjct: 1 MEKRRRRVQEWQELRRKKEETESEKGGEEANVDESKSGKTWTLEGE-SDDEEAPPTGKSD 59
Query: 271 TDMDADEEPKPSENQVGDAMLVDSDGGSAAPALQIGAAE-DEDIDPLDAFMNSMVLPEVE 329
D+D +E P + + GDAM+VD++ +AP ++ A DE+IDPLDAFMNSMVLPEVE
Sbjct: 60 MDIDQEENAIP-DKEAGDAMVVDTENDISAPQSEVDAVNGDEEIDPLDAFMNSMVLPEVE 118
Query: 330 KLKNTVEPSFTDGNNVESKKMDRKGDRRSNGEQPKKSSNKSLGRIIPGEDSDSDYGDLEN 389
L N V D N +SKK D K D NG Q KK S+KSLGRIIPGEDSDSD+GDLEN
Sbjct: 119 MLNNAVVTQTADDNKADSKKKD-KNDEGINGGQRKKGSHKSLGRIIPGEDSDSDHGDLEN 177
Query: 390 DEKPLEDEDDDEFMKRVKKTKAEKLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAY 449
E PLEDEDDDEFMKRVKKTKAEKLSIVDHSKIDY PFRKNFYIEVKEI RMTPEEV+AY
Sbjct: 178 SEVPLEDEDDDEFMKRVKKTKAEKLSIVDHSKIDYSPFRKNFYIEVKEILRMTPEEVTAY 237
Query: 450 RKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIG 509
RK LELKIHGKDVPKPIKTWHQTGLTSKI+ETI+KLNYEKPM IQAQALP+IMSGRDCIG
Sbjct: 238 RKLLELKIHGKDVPKPIKTWHQTGLTSKILETIKKLNYEKPMTIQAQALPIIMSGRDCIG 297
Query: 510 VAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGV 569
+AKTGSGKTLAFVLPMLRHIKDQPPV AG+GP+GLIMAPTRELVQQIHSDIRKF K +G+
Sbjct: 298 IAKTGSGKTLAFVLPMLRHIKDQPPVEAGEGPIGLIMAPTRELVQQIHSDIRKFTKALGI 357
Query: 570 RCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRM 629
RCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRM
Sbjct: 358 RCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRM 417
Query: 630 FDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDIT 689
FDMGFEPQITRIVQNIRPD QTVLFSATFPRQVE LARKVLNKPVEIQVGGRSVVNKDI
Sbjct: 418 FDMGFEPQITRIVQNIRPDHQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDIN 477
Query: 690 QLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKD 749
QLVEVRPE +R+ RLLELLG W EKGKIL+FV SQ+KCDALFRDLLK G+PCLSLHGAKD
Sbjct: 478 QLVEVRPEGERWFRLLELLGVWSEKGKILVFVQSQDKCDALFRDLLKFGHPCLSLHGAKD 537
Query: 750 QTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAG 809
QTDRESTISDFKSNVCNLLIATSVAARGLDVK+LELVIN+D PNHYEDYVHRVGRTGRAG
Sbjct: 538 QTDRESTISDFKSNVCNLLIATSVAARGLDVKDLELVINYDVPNHYEDYVHRVGRTGRAG 597
Query: 810 RKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAKVNQGLEQAHGTGYGG 869
RKGCAITF SE+DA+Y+PDLVKALELSEQVVP DLKALAD FM KVNQGLEQAHGTGYGG
Sbjct: 598 RKGCAITFFSEDDARYAPDLVKALELSEQVVPQDLKALADGFMVKVNQGLEQAHGTGYGG 657
Query: 870 SGFKFNEEEDEKRKAAKKAQAKEYGFEEDKSDSDDEDEGIRKAGGDISQQD-ALAKISAI 928
SGFKFNEEEDEKR AAKKAQA+EYGFEE+KSDS+DEDE +RKAGGDISQQ +I+A+
Sbjct: 658 SGFKFNEEEDEKRMAAKKAQAREYGFEEEKSDSEDEDEVVRKAGGDISQQTALAQQIAAL 717
Query: 929 AAASKASASM-PTPISAAQLLPNAGLPISLPGVLGLSIPGAAPTV-SATGLPVVPND-GA 985
AA SK A + PTP S Q L N GLP+ L P V S TGLP N+ A
Sbjct: 718 AAVSKIPAPVAPTPHSVTQFLSNGGLPVPL---------NQGPAVASVTGLPFAHNNEAA 768
Query: 986 ARAAALAAAINLQHNLAKIQADAMPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGA 1045
ARAAA+AAA+NLQHNLA+IQADAMPEHYEAELEINDFPQNARWKVTHKETLGPIS+WTGA
Sbjct: 769 ARAAAMAAAMNLQHNLARIQADAMPEHYEAELEINDFPQNARWKVTHKETLGPISDWTGA 828
Query: 1046 AITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLEDFTNQALSLPGGAQ 1105
AITTRGQ+FPP ++ GPG+RKLYLFIEGPTEQSVKRAKA+LK VLED TNQ LPGGAQ
Sbjct: 829 AITTRGQFFPPGKVPGPGDRKLYLFIEGPTEQSVKRAKADLKHVLEDITNQTYQLPGGAQ 888
Query: 1106 PGRYSVV 1112
PG+YSVV
Sbjct: 889 PGKYSVV 895
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15218071|ref|NP_173516.1| DEAD-box ATP-dependent RNA helicase 42 [Arabidopsis thaliana] gi|108861895|sp|Q8H0U8.2|RH42_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 42 gi|4836896|gb|AAD30599.1|AC007369_9 Similar to RNA helicases [Arabidopsis thaliana] gi|332191919|gb|AEE30040.1| DEAD-box ATP-dependent RNA helicase 42 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1412 bits (3656), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 745/988 (75%), Positives = 848/988 (85%), Gaps = 35/988 (3%)
Query: 134 VESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVEDDSDKKE 193
V +++SD+D RD KRRR+ + KE+ RE+S+ RS+RH D SP+ K VED+ +KKE
Sbjct: 205 VGNEESDDDVKRDLKRRRKEGGERKEKEREKSVGRSSRHED----SPKRKSVEDNGEKKE 260
Query: 194 KKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGDANVEEPKAGRNWTL 253
KKTREEELEDEQ+KLDEE+EKRRRRVQEWQELKRKKEE+E E++GDA+ EPKAG+ WTL
Sbjct: 261 KKTREEELEDEQKKLDEEVEKRRRRVQEWQELKRKKEEAESESKGDADGNEPKAGKAWTL 320
Query: 254 DREDSDDEEVPQTGKSETDMDADEEPKPSENQVGDAMLVDSDGGSAAPALQI---GAAED 310
+ E SDDEE KSET+MD DEE KP + GDA +VD + +AA + GA ++
Sbjct: 321 EGE-SDDEEGHPEEKSETEMDVDEETKPEND--GDAKMVDLENETAATVSESGGDGAVDE 377
Query: 311 EDIDPLDAFMNSMVLPEVEKLKNTV-EPSFTDGNNVESKKMDRKGDRRSNGEQPKKSSNK 369
E+IDPLDAFMN+MVLPEVEK N P+ DG +D K + + +G++PKK NK
Sbjct: 378 EEIDPLDAFMNTMVLPEVEKFCNGAPPPAVNDGT------LDSKMNGKESGDRPKKGFNK 431
Query: 370 SLGRIIPGEDSDSDYGDLENDEKPLEDEDDDEFMKRVKKTKAEKLSIVDHSKIDYQPFRK 429
+LGRII GEDSDSDY + +ND+ P DEDD+EFMKRVKKTKAEKLS+VDHSKI+Y+PFRK
Sbjct: 432 ALGRIIQGEDSDSDYSEPKNDDDPSLDEDDEEFMKRVKKTKAEKLSLVDHSKIEYEPFRK 491
Query: 430 NFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEK 489
NFYIEVK+I+RMT EEV+ YRK+LELK+HGKDVP+PIK WHQTGLTSKI++T++KLNYEK
Sbjct: 492 NFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKKLNYEK 551
Query: 490 PMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT 549
PMPIQ QALP+IMSGRDCIGVAKTGSGKTL FVLPMLRHIKDQPPV AGDGP+GL+MAPT
Sbjct: 552 PMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPT 611
Query: 550 RELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSG 609
RELVQQIHSDIRKF+K +G+RCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTS
Sbjct: 612 RELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSS 671
Query: 610 GKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKV 669
GKITNLRRVT+LVMDEADRMFDMGFEPQITRI+QNIRP+RQTVLFSATFPRQVE LARKV
Sbjct: 672 GKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTVLFSATFPRQVETLARKV 731
Query: 670 LNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDA 729
LNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEW EKGKIL+FV SQEKCDA
Sbjct: 732 LNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWSEKGKILVFVQSQEKCDA 791
Query: 730 LFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINF 789
L+RD++K YPCLSLHG KDQTDRESTISDFK++VCNLLIATSVAARGLDVKELELV+NF
Sbjct: 792 LYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLLIATSVAARGLDVKELELVVNF 851
Query: 790 DAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALAD 849
DAPNHYEDYVHRVGRTGRAGRKGCA+TFISE+DAKY+PDLVKALELSEQ VPDDLKALAD
Sbjct: 852 DAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALELSEQPVPDDLKALAD 911
Query: 850 SFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEEDKSDSDDEDEGI 909
FM KV QG+EQAHGTGYGGSGFKFNEEE+E RKAAKKAQAKEYGFEEDKSDS+DE++ +
Sbjct: 912 GFMVKVKQGIEQAHGTGYGGSGFKFNEEEEEVRKAAKKAQAKEYGFEEDKSDSEDENDVV 971
Query: 910 RKA-GGDISQQDAL---AKISAIAAASKASASMPTPISAAQLLPNAGLPISLPGVLGLSI 965
RKA GG+ISQQ A A AA + A+A + P++A QLL N G ++PGVL +++
Sbjct: 972 RKAGGGEISQQQATFAQIAAIAAAAKAAAAAPVSAPVTANQLLANGGGLAAMPGVLPVTV 1031
Query: 966 PGAAPTVSATGLPVVPNDGAARAAALAAAINLQHNLAKIQADAMPEHYEAELEINDFPQN 1025
P +P++GA RAAA+ AA+NLQHNLAKIQADAMPEHYEAELEINDFPQN
Sbjct: 1032 ------------PTLPSEGAGRAAAMVAAMNLQHNLAKIQADAMPEHYEAELEINDFPQN 1079
Query: 1026 ARWKVTHKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAE 1085
ARWKVTHKETLGPISEWTGAAITTRGQ++P RI GPGERKLYLFIEGP+E+SVK AKAE
Sbjct: 1080 ARWKVTHKETLGPISEWTGAAITTRGQFYPTGRIPGPGERKLYLFIEGPSEKSVKHAKAE 1139
Query: 1086 LKRVLEDFTNQAL-SLPGGAQPGRYSVV 1112
LKRVLED TNQA+ SLPGGA GRYSV+
Sbjct: 1140 LKRVLEDITNQAMSSLPGGAS-GRYSVL 1166
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1112 | ||||||
| TAIR|locus:2037416 | 1166 | RCF1 "regulator of CBF gene ex | 0.830 | 0.791 | 0.686 | 0.0 | |
| TAIR|locus:2074899 | 989 | AT3G09620 [Arabidopsis thalian | 0.428 | 0.481 | 0.724 | 9.8e-251 | |
| MGI|MGI:1920895 | 1032 | Ddx46 "DEAD (Asp-Glu-Ala-Asp) | 0.516 | 0.556 | 0.522 | 2.5e-192 | |
| RGD|708480 | 1032 | Ddx46 "DEAD (Asp-Glu-Ala-Asp) | 0.516 | 0.556 | 0.522 | 8.4e-192 | |
| UNIPROTKB|Q62780 | 1032 | Ddx46 "Probable ATP-dependent | 0.516 | 0.556 | 0.522 | 8.4e-192 | |
| UNIPROTKB|F1PK90 | 1032 | DDX46 "Uncharacterized protein | 0.516 | 0.556 | 0.522 | 4.6e-191 | |
| UNIPROTKB|Q7L014 | 1031 | DDX46 "Probable ATP-dependent | 0.516 | 0.556 | 0.522 | 4.6e-191 | |
| UNIPROTKB|I3LR20 | 1032 | DDX46 "Uncharacterized protein | 0.516 | 0.556 | 0.522 | 7.5e-191 | |
| UNIPROTKB|F1MX40 | 1032 | DDX46 "Uncharacterized protein | 0.516 | 0.556 | 0.522 | 7.5e-191 | |
| FB|FBgn0030631 | 1224 | CG6227 [Drosophila melanogaste | 0.417 | 0.379 | 0.605 | 5.5e-188 |
| TAIR|locus:2037416 RCF1 "regulator of CBF gene expression 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3250 (1149.1 bits), Expect = 0., P = 0.
Identities = 656/956 (68%), Positives = 732/956 (76%)
Query: 165 SLSRSNRHRDENDESPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMEKRRRRVQEWQX 224
S+ RS+RH D SP+ +EKRRRRVQEWQ
Sbjct: 236 SVGRSSRHED----SPKRKSVEDNGEKKEKKTREEELEDEQKKLDEEVEKRRRRVQEWQE 291
Query: 225 XXXXXXXXXXXXXGDANVEEPKAGRNWTLDREDSDDEEVPQTGKSETDMDADEEPKPSEN 284
GDA+ EPKAG+ WTL+ E SDDEE KSET+MD DEE KP EN
Sbjct: 292 LKRKKEEAESESKGDADGNEPKAGKAWTLEGE-SDDEEGHPEEKSETEMDVDEETKP-EN 349
Query: 285 QVGDAMLVDSDGGSAAPALQIG---AAEDEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTD 341
GDA +VD + +AA + G A ++E+IDPLDAFMN+MVLPEVEK N P +
Sbjct: 350 D-GDAKMVDLENETAATVSESGGDGAVDEEEIDPLDAFMNTMVLPEVEKFCNGAPPPAVN 408
Query: 342 GNNVESKKMDRKGDRRSNGEQPKKSSNKSLGRIIPGEDSDSDYGXXXXXXXXXXXXXXXX 401
++SK M+ K +G++PKK NK+LGRII GEDSDSDY
Sbjct: 409 DGTLDSK-MNGK----ESGDRPKKGFNKALGRIIQGEDSDSDYSEPKNDDDPSLDEDDEE 463
Query: 402 FMKRVKKTKAEKLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKD 461
FMKRVKKTKAEKLS+VDHSKI+Y+PFRKNFYIEVK+I+RMT EEV+ YRK+LELK+HGKD
Sbjct: 464 FMKRVKKTKAEKLSLVDHSKIEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKD 523
Query: 462 VPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAF 521
VP+PIK WHQTGLTSKI++T++KLNYEKPMPIQ QALP+IMSGRDCIGVAKTGSGKTL F
Sbjct: 524 VPRPIKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGF 583
Query: 522 VLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVA 581
VLPMLRHIKDQPPV AGDGP+GL+MAPTRELVQQIHSDIRKF+K +G+RCVPVYGGSGVA
Sbjct: 584 VLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVA 643
Query: 582 QQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRI 641
QQISELKRGTEIVVCTPGRMIDILCTS GKITNLRRVT+LVMDEADRMFDMGFEPQITRI
Sbjct: 644 QQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRI 703
Query: 642 VQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRF 701
+QNIRP+RQTVLFSATFPRQVE LARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRF
Sbjct: 704 IQNIRPERQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRF 763
Query: 702 LRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFK 761
LRLLELLGEW EKGKIL+FV SQEKCDAL+RD++K YPCLSLHG KDQTDRESTISDFK
Sbjct: 764 LRLLELLGEWSEKGKILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFK 823
Query: 762 SNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEE 821
++VCNLLIATSVAARGLDVKELELV+NFDAPNHYEDYVHRVGRTGRAGRKGCA+TFISE+
Sbjct: 824 NDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISED 883
Query: 822 DAKYSPDLVKALELSEQVVPDDLKALADSFMAKVNQGLEQAHGTGYGGSGFKFNXXXXXX 881
DAKY+PDLVKALELSEQ VPDDLKALAD FM KV QG+EQAHGTGYGGSGFKFN
Sbjct: 884 DAKYAPDLVKALELSEQPVPDDLKALADGFMVKVKQGIEQAHGTGYGGSGFKFNEEEEEV 943
Query: 882 XXXXXXXXXXXYGFXXXXXXXXXXXXGIRKAGG-DISQQDA-LXXXXXXXXXXXXXXXMP 939
YGF +RKAGG +ISQQ A P
Sbjct: 944 RKAAKKAQAKEYGFEEDKSDSEDENDVVRKAGGGEISQQQATFAQIAAIAAAAKAAAAAP 1003
Query: 940 T--PISAAQLLPNAGLPISLPGVLGLSIPGAAPTVSATGLPVVPNDGXXXXXXXXXXINL 997
P++A QLL N G ++PGVL +++P +P++G +NL
Sbjct: 1004 VSAPVTANQLLANGGGLAAMPGVLPVTVP------------TLPSEGAGRAAAMVAAMNL 1051
Query: 998 QHNLAKIQADAMPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYFPPS 1057
QHNLAKIQADAMPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQ++P
Sbjct: 1052 QHNLAKIQADAMPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQFYPTG 1111
Query: 1058 RIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLEDFTNQALS-LPGGAQPGRYSVV 1112
RI GPGERKLYLFIEGP+E+SVK AKAELKRVLED TNQA+S LPGGA GRYSV+
Sbjct: 1112 RIPGPGERKLYLFIEGPSEKSVKHAKAELKRVLEDITNQAMSSLPGGAS-GRYSVL 1166
|
|
| TAIR|locus:2074899 AT3G09620 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1785 (633.4 bits), Expect = 9.8e-251, Sum P(2) = 9.8e-251
Identities = 362/500 (72%), Positives = 412/500 (82%)
Query: 239 DANVEE--PKAGRNWTLDREDSDDEEVPQTGKSETDMDADEEPKPSENQVGDAMLVDSDG 296
+A +E P+ G+ WTLD E SDDE KS+++MD D + K EN GDA +V S+
Sbjct: 180 EAQIESKGPETGKAWTLDGE-SDDEV-----KSDSEMDVDRDTK-LENG-GDAKMVASEN 231
Query: 297 GSAAPALQIG---AAEDEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMDRK 353
+A + G AA++++IDPLDAFMN+MVLPEVEKL N V DG +D K
Sbjct: 232 ETAVTVSENGGDRAADEDEIDPLDAFMNTMVLPEVEKLSNIV----IDGI------LDFK 281
Query: 354 GDRRSNGEQPKKSSNKS-LGRIIPGEDSDSDYGXXXXXXXXXXXXXXXXFMKRVKKTKAE 412
+ + G+Q KK NK+ LGRII GEDSDSDY FMKRVKKTKAE
Sbjct: 282 MNGKETGDQAKKGFNKAALGRIIQGEDSDSDYSEPKSDDDPSLDEDDEEFMKRVKKTKAE 341
Query: 413 KLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQT 472
KLS+VDHSKI+Y+PFRKNFYIEVK+I+RMT + V+AYRK+LELK+HGKDVP+PI+ WHQT
Sbjct: 342 KLSLVDHSKIEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQT 401
Query: 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQ 532
GLTSKI++T++KLNYEKPMPIQAQALP+IMSGRDCIGVAKTGSGKTL FVLPMLRHIKDQ
Sbjct: 402 GLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQ 461
Query: 533 PPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTE 592
PPV AGDGP+GL+MAPTRELVQQI+SDIRKF+K +G+ CVPVYGGSGVAQQISELKRGTE
Sbjct: 462 PPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISELKRGTE 521
Query: 593 IVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTV 652
IVVCTPGRMIDILCTS GKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTV
Sbjct: 522 IVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTV 581
Query: 653 LFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWY 712
LFSATFPRQVE LARKVLNKPVEIQVGGRSVVNKDITQLVE+RPES+RF RLLELLGEWY
Sbjct: 582 LFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEIRPESERFSRLLELLGEWY 641
Query: 713 EKGKILIFVHSQEKCDALFR 732
EKGK+L+FV SQEK + F+
Sbjct: 642 EKGKVLVFVRSQEKSISDFK 661
|
|
| MGI|MGI:1920895 Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1544 (548.6 bits), Expect = 2.5e-192, Sum P(3) = 2.5e-192
Identities = 307/587 (52%), Positives = 403/587 (68%)
Query: 293 DSDGGSAAPALQIGAA-EDEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMD 351
D D A A + G EDE++DPLDA+M V EV+K N GN +S
Sbjct: 204 DDDEDDPAEAEKEGTEMEDEELDPLDAYMEE-VKEEVKKF-NMRSVKGGAGNEKKSGPTV 261
Query: 352 RKGDRRSNGEQPKKSSNKSLGRIIPGEDSDSDYGXXXXXXXXXXXXXXXXFMKRVKKTKA 411
K ++ ++K G ++ + +Y +TK
Sbjct: 262 TKVVTVVTTKKAVVDADKKKGELMENDQDAMEYSSEEEEVDLQTALTGY-------QTKQ 314
Query: 412 EKL-SIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLE-LKIHGKDVPKPIKTW 469
KL VDH KI+Y+PFRKNFY+EV E+A+M+ EEV+ +R ++E + + GK PKPIK+W
Sbjct: 315 RKLLEPVDHGKIEYEPFRKNFYVEVPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSW 374
Query: 470 HQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHI 529
Q G++ KI+ +++K YEKP PIQ QA+P IMSGRD IG+AKTGSGKT+AF+LPM RHI
Sbjct: 375 VQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHI 434
Query: 530 KDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKR 589
DQ + G+GP+ +IM PTREL QI + +KF+K +G+R V VYGG+G+++QI+ELKR
Sbjct: 435 MDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKR 494
Query: 590 GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDR 649
G EI+VCTPGRMID+L + G++TNLRRVTY+V+DEADRMFDMGFEPQ+ RIV N+RPDR
Sbjct: 495 GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDR 554
Query: 650 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLG 709
QTV+FSATFPR +E LAR++L+KP+E+QVGGRSVV D+ Q V V E +FL+LLELLG
Sbjct: 555 QTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLG 614
Query: 710 EWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLI 769
+ E G ++IFV QE D L +DL++ YPC+SLHG DQ DR+S I+DFK+ C LL+
Sbjct: 615 HYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLV 674
Query: 770 ATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDL 829
ATSVAARGLDVK L LV+N+ PNHYEDYVHR GRTGRAG KG A TFI+E+ A+Y+ D+
Sbjct: 675 ATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDI 734
Query: 830 VKALELSEQVVPDDLKALADSFMAKVN-QGLEQAHGTGYGGSGFKFN 875
+KALELS VP DL+ L F + +G +G+ G GFKF+
Sbjct: 735 IKALELSGTAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFD 781
|
|
| RGD|708480 Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1543 (548.2 bits), Expect = 8.4e-192, Sum P(3) = 8.4e-192
Identities = 307/587 (52%), Positives = 403/587 (68%)
Query: 293 DSDGGSAAPALQIG-AAEDEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMD 351
D D A A + G EDE++DPLDA+M V EV+K N GN +S
Sbjct: 204 DDDEDDPAEAEKEGNEMEDEELDPLDAYMEE-VKEEVKKF-NMRSVKGGAGNEKKSGPTV 261
Query: 352 RKGDRRSNGEQPKKSSNKSLGRIIPGEDSDSDYGXXXXXXXXXXXXXXXXFMKRVKKTKA 411
K ++ ++K G ++ + +Y +TK
Sbjct: 262 TKVVTVVTTKKAVVDADKKKGELMENDQDAMEYSSEEEEVDLQTALTGY-------QTKQ 314
Query: 412 EKL-SIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLE-LKIHGKDVPKPIKTW 469
KL VDH KI+Y+PFRKNFY+EV E+A+M+ EEV+ +R ++E + + GK PKPIK+W
Sbjct: 315 RKLLEPVDHGKIEYEPFRKNFYVEVPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSW 374
Query: 470 HQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHI 529
Q G++ KI+ +++K YEKP PIQ QA+P IMSGRD IG+AKTGSGKT+AF+LPM RHI
Sbjct: 375 VQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHI 434
Query: 530 KDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKR 589
DQ + G+GP+ +IM PTREL QI + +KF+K +G+R V VYGG+G+++QI+ELKR
Sbjct: 435 MDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKR 494
Query: 590 GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDR 649
G EI+VCTPGRMID+L + G++TNLRRVTY+V+DEADRMFDMGFEPQ+ RIV N+RPDR
Sbjct: 495 GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDR 554
Query: 650 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLG 709
QTV+FSATFPR +E LAR++L+KP+E+QVGGRSVV D+ Q V V E +FL+LLELLG
Sbjct: 555 QTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLG 614
Query: 710 EWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLI 769
+ E G ++IFV QE D L +DL++ YPC+SLHG DQ DR+S I+DFK+ C LL+
Sbjct: 615 HYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLV 674
Query: 770 ATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDL 829
ATSVAARGLDVK L LV+N+ PNHYEDYVHR GRTGRAG KG A TFI+E+ A+Y+ D+
Sbjct: 675 ATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDI 734
Query: 830 VKALELSEQVVPDDLKALADSFMAKVN-QGLEQAHGTGYGGSGFKFN 875
+KALELS VP DL+ L F + +G +G+ G GFKF+
Sbjct: 735 IKALELSGTAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFD 781
|
|
| UNIPROTKB|Q62780 Ddx46 "Probable ATP-dependent RNA helicase DDX46" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1543 (548.2 bits), Expect = 8.4e-192, Sum P(3) = 8.4e-192
Identities = 307/587 (52%), Positives = 403/587 (68%)
Query: 293 DSDGGSAAPALQIG-AAEDEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMD 351
D D A A + G EDE++DPLDA+M V EV+K N GN +S
Sbjct: 204 DDDEDDPAEAEKEGNEMEDEELDPLDAYMEE-VKEEVKKF-NMRSVKGGAGNEKKSGPTV 261
Query: 352 RKGDRRSNGEQPKKSSNKSLGRIIPGEDSDSDYGXXXXXXXXXXXXXXXXFMKRVKKTKA 411
K ++ ++K G ++ + +Y +TK
Sbjct: 262 TKVVTVVTTKKAVVDADKKKGELMENDQDAMEYSSEEEEVDLQTALTGY-------QTKQ 314
Query: 412 EKL-SIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLE-LKIHGKDVPKPIKTW 469
KL VDH KI+Y+PFRKNFY+EV E+A+M+ EEV+ +R ++E + + GK PKPIK+W
Sbjct: 315 RKLLEPVDHGKIEYEPFRKNFYVEVPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSW 374
Query: 470 HQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHI 529
Q G++ KI+ +++K YEKP PIQ QA+P IMSGRD IG+AKTGSGKT+AF+LPM RHI
Sbjct: 375 VQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHI 434
Query: 530 KDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKR 589
DQ + G+GP+ +IM PTREL QI + +KF+K +G+R V VYGG+G+++QI+ELKR
Sbjct: 435 MDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKR 494
Query: 590 GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDR 649
G EI+VCTPGRMID+L + G++TNLRRVTY+V+DEADRMFDMGFEPQ+ RIV N+RPDR
Sbjct: 495 GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDR 554
Query: 650 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLG 709
QTV+FSATFPR +E LAR++L+KP+E+QVGGRSVV D+ Q V V E +FL+LLELLG
Sbjct: 555 QTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLG 614
Query: 710 EWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLI 769
+ E G ++IFV QE D L +DL++ YPC+SLHG DQ DR+S I+DFK+ C LL+
Sbjct: 615 HYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLV 674
Query: 770 ATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDL 829
ATSVAARGLDVK L LV+N+ PNHYEDYVHR GRTGRAG KG A TFI+E+ A+Y+ D+
Sbjct: 675 ATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDI 734
Query: 830 VKALELSEQVVPDDLKALADSFMAKVN-QGLEQAHGTGYGGSGFKFN 875
+KALELS VP DL+ L F + +G +G+ G GFKF+
Sbjct: 735 IKALELSGTAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFD 781
|
|
| UNIPROTKB|F1PK90 DDX46 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1540 (547.2 bits), Expect = 4.6e-191, Sum P(3) = 4.6e-191
Identities = 307/587 (52%), Positives = 402/587 (68%)
Query: 293 DSDGGSAAPALQIG-AAEDEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMD 351
D D A A + G E E++DPLDA+M V EV+K N GN +S
Sbjct: 204 DDDEDDPAEAEKEGNEMEGEELDPLDAYMEE-VKEEVKKF-NMRSVKGGGGNEKKSGPTV 261
Query: 352 RKGDRRSNGEQPKKSSNKSLGRIIPGEDSDSDYGXXXXXXXXXXXXXXXXFMKRVKKTKA 411
K ++ S+K G ++ + +Y +TK
Sbjct: 262 TKVVTVVTTKKAVVDSDKKKGELMENDQDAMEYSSEEEEVDLQTALTGY-------QTKQ 314
Query: 412 EKL-SIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLE-LKIHGKDVPKPIKTW 469
KL VDH KI+Y+PFRKNFY+EV E+A+M+ EEV+ +R ++E + + GK PKPIK+W
Sbjct: 315 RKLLEPVDHGKIEYEPFRKNFYVEVPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSW 374
Query: 470 HQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHI 529
Q G++ KI+ +++K YEKP PIQ QA+P IMSGRD IG+AKTGSGKT+AF+LPM RHI
Sbjct: 375 VQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHI 434
Query: 530 KDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKR 589
DQ + G+GP+ +IM PTREL QI + +KF+K +G+R V VYGG+G+++QI+ELKR
Sbjct: 435 MDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKR 494
Query: 590 GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDR 649
G EI+VCTPGRMID+L + G++TNLRRVTY+V+DEADRMFDMGFEPQ+ RIV N+RPDR
Sbjct: 495 GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDR 554
Query: 650 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLG 709
QTV+FSATFPR +E LAR++L+KP+E+QVGGRSVV D+ Q V V E +FL+LLELLG
Sbjct: 555 QTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLG 614
Query: 710 EWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLI 769
+ E G ++IFV QE D L +DL++ YPC+SLHG DQ DR+S I+DFK+ C LL+
Sbjct: 615 HYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLV 674
Query: 770 ATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDL 829
ATSVAARGLDVK L LV+N+ PNHYEDYVHR GRTGRAG KG A TFI+E+ A+Y+ D+
Sbjct: 675 ATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDI 734
Query: 830 VKALELSEQVVPDDLKALADSFMAKVN-QGLEQAHGTGYGGSGFKFN 875
+KALELS VP DL+ L F + +G +G+ G GFKF+
Sbjct: 735 IKALELSGTAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFD 781
|
|
| UNIPROTKB|Q7L014 DDX46 "Probable ATP-dependent RNA helicase DDX46" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1540 (547.2 bits), Expect = 4.6e-191, Sum P(3) = 4.6e-191
Identities = 307/587 (52%), Positives = 402/587 (68%)
Query: 293 DSDGGSAAPALQIG-AAEDEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMD 351
D D A A + G E E++DPLDA+M V EV+K N GN +S
Sbjct: 204 DDDEDDPAEAEKEGNEMEGEELDPLDAYMEE-VKEEVKKF-NMRSVKGGGGNEKKSGPTV 261
Query: 352 RKGDRRSNGEQPKKSSNKSLGRIIPGEDSDSDYGXXXXXXXXXXXXXXXXFMKRVKKTKA 411
K ++ S+K G ++ + +Y +TK
Sbjct: 262 TKVVTVVTTKKAVVDSDKKKGELMENDQDAMEYSSEEEEVDLQTALTGY-------QTKQ 314
Query: 412 EKL-SIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLE-LKIHGKDVPKPIKTW 469
KL VDH KI+Y+PFRKNFY+EV E+A+M+ EEV+ +R ++E + + GK PKPIK+W
Sbjct: 315 RKLLEPVDHGKIEYEPFRKNFYVEVPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSW 374
Query: 470 HQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHI 529
Q G++ KI+ +++K YEKP PIQ QA+P IMSGRD IG+AKTGSGKT+AF+LPM RHI
Sbjct: 375 VQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHI 434
Query: 530 KDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKR 589
DQ + G+GP+ +IM PTREL QI + +KF+K +G+R V VYGG+G+++QI+ELKR
Sbjct: 435 MDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKR 494
Query: 590 GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDR 649
G EI+VCTPGRMID+L + G++TNLRRVTY+V+DEADRMFDMGFEPQ+ RIV N+RPDR
Sbjct: 495 GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDR 554
Query: 650 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLG 709
QTV+FSATFPR +E LAR++L+KP+E+QVGGRSVV D+ Q V V E +FL+LLELLG
Sbjct: 555 QTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLG 614
Query: 710 EWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLI 769
+ E G ++IFV QE D L +DL++ YPC+SLHG DQ DR+S I+DFK+ C LL+
Sbjct: 615 HYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLV 674
Query: 770 ATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDL 829
ATSVAARGLDVK L LV+N+ PNHYEDYVHR GRTGRAG KG A TFI+E+ A+Y+ D+
Sbjct: 675 ATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDI 734
Query: 830 VKALELSEQVVPDDLKALADSFMAKVN-QGLEQAHGTGYGGSGFKFN 875
+KALELS VP DL+ L F + +G +G+ G GFKF+
Sbjct: 735 IKALELSGTAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFD 781
|
|
| UNIPROTKB|I3LR20 DDX46 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1541 (547.5 bits), Expect = 7.5e-191, Sum P(3) = 7.5e-191
Identities = 307/587 (52%), Positives = 402/587 (68%)
Query: 293 DSDGGSAAPALQIG-AAEDEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMD 351
D D A A + G E E++DPLDA+M V EV+K N GN +S
Sbjct: 204 DDDEDDPAEAEKEGNEVEGEELDPLDAYMEE-VKEEVKKF-NMRSVKGGGGNEKKSGPTV 261
Query: 352 RKGDRRSNGEQPKKSSNKSLGRIIPGEDSDSDYGXXXXXXXXXXXXXXXXFMKRVKKTKA 411
K ++ S+K G ++ + +Y +TK
Sbjct: 262 TKVVTVVTTKKAVVDSDKKKGELMENDQDAMEYSSEEEEVDLQTALTGY-------QTKQ 314
Query: 412 EKL-SIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLE-LKIHGKDVPKPIKTW 469
KL VDH KI+Y+PFRKNFY+EV E+A+M+ EEV+ +R ++E + + GK PKPIK+W
Sbjct: 315 RKLLEPVDHGKIEYEPFRKNFYVEVPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSW 374
Query: 470 HQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHI 529
Q G++ KI+ +++K YEKP PIQ QA+P IMSGRD IG+AKTGSGKT+AF+LPM RHI
Sbjct: 375 VQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHI 434
Query: 530 KDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKR 589
DQ + G+GP+ +IM PTREL QI + +KF+K +G+R V VYGG+G+++QI+ELKR
Sbjct: 435 MDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKR 494
Query: 590 GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDR 649
G EI+VCTPGRMID+L + G++TNLRRVTY+V+DEADRMFDMGFEPQ+ RIV N+RPDR
Sbjct: 495 GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDR 554
Query: 650 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLG 709
QTV+FSATFPR +E LAR++L+KP+E+QVGGRSVV D+ Q V V E +FL+LLELLG
Sbjct: 555 QTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLG 614
Query: 710 EWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLI 769
+ E G ++IFV QE D L +DL++ YPC+SLHG DQ DR+S I+DFK+ C LL+
Sbjct: 615 HYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLV 674
Query: 770 ATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDL 829
ATSVAARGLDVK L LV+N+ PNHYEDYVHR GRTGRAG KG A TFI+E+ A+Y+ D+
Sbjct: 675 ATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDI 734
Query: 830 VKALELSEQVVPDDLKALADSFMAKVN-QGLEQAHGTGYGGSGFKFN 875
+KALELS VP DL+ L F + +G +G+ G GFKF+
Sbjct: 735 IKALELSGTAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFD 781
|
|
| UNIPROTKB|F1MX40 DDX46 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1538 (546.5 bits), Expect = 7.5e-191, Sum P(3) = 7.5e-191
Identities = 307/587 (52%), Positives = 402/587 (68%)
Query: 293 DSDGGSAAPALQIG-AAEDEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMD 351
D D A A + G E E++DPLDA+M V EV+K N GN +S
Sbjct: 204 DDDEDDPAEAEKEGNEMEGEELDPLDAYMEE-VKEEVKKF-NMRSVKGGGGNEKKSGPTV 261
Query: 352 RKGDRRSNGEQPKKSSNKSLGRIIPGEDSDSDYGXXXXXXXXXXXXXXXXFMKRVKKTKA 411
K ++ S+K G ++ + +Y +TK
Sbjct: 262 TKVVTVVTTKKAVVDSDKKKGELMENDQDAMEYSSEEEEVDLQTALTGY-------QTKQ 314
Query: 412 EKL-SIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLE-LKIHGKDVPKPIKTW 469
KL VDH KI+Y+PFRKNFY+EV E+A+M+ EEV+ +R ++E + + GK PKPIK+W
Sbjct: 315 RKLLEPVDHGKIEYEPFRKNFYVEVPELAKMSLEEVNVFRLEMEGITVKGKGCPKPIKSW 374
Query: 470 HQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHI 529
Q G++ KI+ +++K YEKP PIQ QA+P IMSGRD IG+AKTGSGKT+AF+LPM RHI
Sbjct: 375 VQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHI 434
Query: 530 KDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKR 589
DQ + G+GP+ +IM PTREL QI + +KF+K +G+R V VYGG+G+++QI+ELKR
Sbjct: 435 MDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKR 494
Query: 590 GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDR 649
G EI+VCTPGRMID+L + G++TNLRRVTY+V+DEADRMFDMGFEPQ+ RIV N+RPDR
Sbjct: 495 GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDR 554
Query: 650 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLG 709
QTV+FSATFPR +E LAR++L+KP+E+QVGGRSVV D+ Q V V E +FL+LLELLG
Sbjct: 555 QTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLG 614
Query: 710 EWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLI 769
+ E G ++IFV QE D L +DL++ YPC+SLHG DQ DR+S I+DFK+ C LL+
Sbjct: 615 HYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLV 674
Query: 770 ATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDL 829
ATSVAARGLDVK L LV+N+ PNHYEDYVHR GRTGRAG KG A TFI+E+ A+Y+ D+
Sbjct: 675 ATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDI 734
Query: 830 VKALELSEQVVPDDLKALADSFMAKVN-QGLEQAHGTGYGGSGFKFN 875
+KALELS VP DL+ L F + +G +G+ G GFKF+
Sbjct: 735 IKALELSGTAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFD 781
|
|
| FB|FBgn0030631 CG6227 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1511 (537.0 bits), Expect = 5.5e-188, Sum P(4) = 5.5e-188
Identities = 282/466 (60%), Positives = 361/466 (77%)
Query: 412 EKLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLE-LKIHGKDVPKPIKTWH 470
++L+ +DHS + Y PFRKNFY+EV E+ RMT +V YR LE +++ GK PKPIKTW
Sbjct: 454 KELAKIDHSSVTYAPFRKNFYVEVPELTRMTAADVEKYRSDLEGIQVKGKGCPKPIKTWA 513
Query: 471 QTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIK 530
Q G++ K ME +R+L +EKP PIQ QA+P IMSGRD IG+AKTGSGKTLAF+LPM RHI
Sbjct: 514 QCGVSKKEMEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHIL 573
Query: 531 DQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRG 590
DQP + GDG + +IMAPTREL QI DIRKF+K +G+R V VYGG+G+++QI+ELKRG
Sbjct: 574 DQPSMEDGDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRG 633
Query: 591 TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQ 650
EI+VCTPGRMID+L + G++TNLRRVTY+V+DEADRMFDMGFEPQ+ RI+ N+RPDRQ
Sbjct: 634 AEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQ 693
Query: 651 TVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGE 710
TV+FSATFPRQ+E LAR++L KP+E+ VGGRSVV K++ Q V + + +F +LLELLG
Sbjct: 694 TVMFSATFPRQMEALARRILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFKLLELLGI 753
Query: 711 WYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIA 770
+ E G I++FV QE D L RDL+K YPC+SLHG DQ DR+STI DFKS LLIA
Sbjct: 754 YQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIA 813
Query: 771 TSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLV 830
TSVAARGLDVK+L LV+N+D PNHYEDYVHR GRTGRAG+KG A TFI+ E ++Y+ D++
Sbjct: 814 TSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRYAGDII 873
Query: 831 KALELSEQVVPDDLKALADSFMAKVNQGLEQAH-GTGYGGSGFKFN 875
+A++LS ++P +L+AL + A + H G G+ G GFKF+
Sbjct: 874 RAMDLSGTLIPAELQALWTEYKALQEAEGKTVHTGGGFSGKGFKFD 919
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q0J7Y8 | RH45_ORYSJ | 3, ., 6, ., 4, ., 1, 3 | 0.6501 | 0.7688 | 0.9028 | yes | no |
| Q8H0U8 | RH42_ARATH | 3, ., 6, ., 4, ., 1, 3 | 0.7540 | 0.8570 | 0.8173 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4.13 | 0.991 |
| 3rd Layer | 3.6.4 | 0.976 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1112 | |||
| PTZ00110 | 545 | PTZ00110, PTZ00110, helicase; Provisional | 1e-145 | |
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 1e-121 | |
| cd00268 | 203 | cd00268, DEADc, DEAD-box helicases | 2e-90 | |
| PRK11776 | 460 | PRK11776, PRK11776, ATP-dependent RNA helicase Dbp | 7e-88 | |
| PRK10590 | 456 | PRK10590, PRK10590, ATP-dependent RNA helicase Rhl | 3e-78 | |
| PRK11192 | 434 | PRK11192, PRK11192, ATP-dependent RNA helicase Srm | 1e-69 | |
| PLN00206 | 518 | PLN00206, PLN00206, DEAD-box ATP-dependent RNA hel | 1e-69 | |
| PRK11634 | 629 | PRK11634, PRK11634, ATP-dependent RNA helicase Dea | 1e-65 | |
| PRK04837 | 423 | PRK04837, PRK04837, ATP-dependent RNA helicase Rhl | 1e-65 | |
| PRK01297 | 475 | PRK01297, PRK01297, ATP-dependent RNA helicase Rhl | 3e-65 | |
| PTZ00424 | 401 | PTZ00424, PTZ00424, helicase 45; Provisional | 1e-61 | |
| pfam00270 | 169 | pfam00270, DEAD, DEAD/DEAH box helicase | 4e-61 | |
| PRK04537 | 572 | PRK04537, PRK04537, ATP-dependent RNA helicase Rhl | 3e-60 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 2e-54 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 7e-41 | |
| cd00079 | 131 | cd00079, HELICc, Helicase superfamily c-terminal d | 2e-35 | |
| pfam00271 | 78 | pfam00271, Helicase_C, Helicase conserved C-termin | 1e-25 | |
| smart00490 | 82 | smart00490, HELICc, helicase superfamily c-termina | 2e-22 | |
| PRK12678 | 672 | PRK12678, PRK12678, transcription termination fact | 9e-21 | |
| PRK12678 | 672 | PRK12678, PRK12678, transcription termination fact | 3e-17 | |
| TIGR01642 | 509 | TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la | 3e-17 | |
| TIGR01642 | 509 | TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la | 8e-16 | |
| TIGR01642 | 509 | TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la | 8e-16 | |
| PRK12678 | 672 | PRK12678, PRK12678, transcription termination fact | 1e-14 | |
| TIGR01642 | 509 | TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la | 1e-14 | |
| COG1201 | 814 | COG1201, Lhr, Lhr-like helicases [General function | 3e-14 | |
| TIGR01642 | 509 | TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la | 7e-14 | |
| TIGR00614 | 470 | TIGR00614, recQ_fam, ATP-dependent DNA helicase, R | 4e-13 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-12 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-12 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-11 | |
| pfam10243 | 506 | pfam10243, MIP-T3, Microtubule-binding protein MIP | 2e-11 | |
| pfam10243 | 506 | pfam10243, MIP-T3, Microtubule-binding protein MIP | 2e-11 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-11 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 7e-11 | |
| COG0514 | 590 | COG0514, RecQ, Superfamily II DNA helicase [DNA re | 9e-11 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 1e-10 | |
| TIGR01622 | 457 | TIGR01622, SF-CC1, splicing factor, CC1-like famil | 1e-10 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-10 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-10 | |
| COG1111 | 542 | COG1111, MPH1, ERCC4-like helicases [DNA replicati | 2e-10 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-10 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 3e-10 | |
| TIGR01642 | 509 | TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la | 4e-10 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 4e-10 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 5e-10 | |
| pfam08648 | 158 | pfam08648, DUF1777, Protein of unknown function (D | 6e-10 | |
| pfam10243 | 506 | pfam10243, MIP-T3, Microtubule-binding protein MIP | 7e-10 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 1e-09 | |
| TIGR01622 | 457 | TIGR01622, SF-CC1, splicing factor, CC1-like famil | 1e-09 | |
| TIGR01622 | 457 | TIGR01622, SF-CC1, splicing factor, CC1-like famil | 1e-09 | |
| PRK12678 | 672 | PRK12678, PRK12678, transcription termination fact | 3e-09 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 3e-09 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 4e-09 | |
| PRK10811 | 1068 | PRK10811, rne, ribonuclease E; Reviewed | 4e-09 | |
| PRK10811 | 1068 | PRK10811, rne, ribonuclease E; Reviewed | 4e-09 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 5e-09 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 6e-09 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 6e-09 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 9e-09 | |
| pfam08648 | 158 | pfam08648, DUF1777, Protein of unknown function (D | 1e-08 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-08 | |
| TIGR01622 | 457 | TIGR01622, SF-CC1, splicing factor, CC1-like famil | 2e-08 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-08 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-08 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 2e-08 | |
| TIGR01389 | 591 | TIGR01389, recQ, ATP-dependent DNA helicase RecQ | 2e-08 | |
| pfam08648 | 158 | pfam08648, DUF1777, Protein of unknown function (D | 3e-08 | |
| pfam08648 | 158 | pfam08648, DUF1777, Protein of unknown function (D | 3e-08 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 3e-08 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 3e-08 | |
| TIGR01642 | 509 | TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la | 4e-08 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 5e-08 | |
| pfam08648 | 158 | pfam08648, DUF1777, Protein of unknown function (D | 5e-08 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 5e-08 | |
| TIGR00927 | 1096 | TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | 5e-08 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 7e-08 | |
| pfam02029 | 431 | pfam02029, Caldesmon, Caldesmon | 9e-08 | |
| TIGR01622 | 457 | TIGR01622, SF-CC1, splicing factor, CC1-like famil | 1e-07 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-07 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 1e-07 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 1e-07 | |
| TIGR01642 | 509 | TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la | 2e-07 | |
| pfam10243 | 506 | pfam10243, MIP-T3, Microtubule-binding protein MIP | 2e-07 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 2e-07 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 3e-07 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 3e-07 | |
| COG1203 | 733 | COG1203, COG1203, CRISPR-associated helicase Cas3 | 3e-07 | |
| COG1205 | 851 | COG1205, COG1205, Distinct helicase family with a | 5e-07 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 7e-07 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 7e-07 | |
| pfam07767 | 387 | pfam07767, Nop53, Nop53 (60S ribosomal biogenesis) | 7e-07 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 9e-07 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 9e-07 | |
| COG2433 | 652 | COG2433, COG2433, Uncharacterized conserved protei | 1e-06 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 2e-06 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-06 | |
| COG5271 | 4600 | COG5271, MDN1, AAA ATPase containing von Willebran | 2e-06 | |
| COG5271 | 4600 | COG5271, MDN1, AAA ATPase containing von Willebran | 2e-06 | |
| PTZ00108 | 1388 | PTZ00108, PTZ00108, DNA topoisomerase 2-like prote | 2e-06 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 3e-06 | |
| TIGR00927 | 1096 | TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | 3e-06 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 3e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 4e-06 | |
| PRK05306 | 746 | PRK05306, infB, translation initiation factor IF-2 | 4e-06 | |
| pfam10243 | 506 | pfam10243, MIP-T3, Microtubule-binding protein MIP | 5e-06 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 5e-06 | |
| pfam02029 | 431 | pfam02029, Caldesmon, Caldesmon | 5e-06 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 5e-06 | |
| PRK05306 | 746 | PRK05306, infB, translation initiation factor IF-2 | 6e-06 | |
| pfam09507 | 427 | pfam09507, CDC27, DNA polymerase subunit Cdc27 | 7e-06 | |
| PRK13766 | 773 | PRK13766, PRK13766, Hef nuclease; Provisional | 7e-06 | |
| PRK12678 | 672 | PRK12678, PRK12678, transcription termination fact | 8e-06 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 8e-06 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 9e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-05 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-05 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 1e-05 | |
| pfam02724 | 583 | pfam02724, CDC45, CDC45-like protein | 1e-05 | |
| PTZ00266 | 1021 | PTZ00266, PTZ00266, NIMA-related protein kinase; P | 1e-05 | |
| pfam12871 | 97 | pfam12871, PRP38_assoc, Pre-mRNA-splicing factor 3 | 1e-05 | |
| pfam13904 | 261 | pfam13904, DUF4207, Domain of unknown function (DU | 1e-05 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 2e-05 | |
| pfam04147 | 809 | pfam04147, Nop14, Nop14-like family | 2e-05 | |
| pfam03154 | 979 | pfam03154, Atrophin-1, Atrophin-1 family | 2e-05 | |
| TIGR00934 | 800 | TIGR00934, 2a38euk, potassium uptake protein, Trk | 2e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-05 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 3e-05 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 3e-05 | |
| COG1202 | 830 | COG1202, COG1202, Superfamily II helicase, archaea | 3e-05 | |
| COG1204 | 766 | COG1204, COG1204, Superfamily II helicase [General | 3e-05 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 4e-05 | |
| pfam03154 | 979 | pfam03154, Atrophin-1, Atrophin-1 family | 4e-05 | |
| PHA02896 | 616 | PHA02896, PHA02896, A-type inclusion like protein; | 4e-05 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 5e-05 | |
| PRK00247 | 429 | PRK00247, PRK00247, putative inner membrane protei | 5e-05 | |
| COG2433 | 652 | COG2433, COG2433, Uncharacterized conserved protei | 6e-05 | |
| PHA02896 | 616 | PHA02896, PHA02896, A-type inclusion like protein; | 6e-05 | |
| pfam03344 | 715 | pfam03344, Daxx, Daxx Family | 6e-05 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 7e-05 | |
| pfam04615 | 728 | pfam04615, Utp14, Utp14 protein | 7e-05 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 1e-04 | |
| COG2433 | 652 | COG2433, COG2433, Uncharacterized conserved protei | 1e-04 | |
| pfam12871 | 97 | pfam12871, PRP38_assoc, Pre-mRNA-splicing factor 3 | 1e-04 | |
| pfam04615 | 728 | pfam04615, Utp14, Utp14 protein | 1e-04 | |
| pfam03879 | 105 | pfam03879, Cgr1, Cgr1 family | 1e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-04 | |
| COG2433 | 652 | COG2433, COG2433, Uncharacterized conserved protei | 2e-04 | |
| PRK12585 | 197 | PRK12585, PRK12585, putative monovalent cation/H+ | 2e-04 | |
| TIGR02680 | 1353 | TIGR02680, TIGR02680, TIGR02680 family protein | 2e-04 | |
| pfam09756 | 189 | pfam09756, DDRGK, DDRGK domain | 2e-04 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 2e-04 | |
| TIGR04121 | 803 | TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA | 2e-04 | |
| pfam07946 | 322 | pfam07946, DUF1682, Protein of unknown function (D | 2e-04 | |
| pfam05793 | 528 | pfam05793, TFIIF_alpha, Transcription initiation f | 2e-04 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 3e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 3e-04 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 3e-04 | |
| TIGR00927 | 1096 | TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | 3e-04 | |
| PTZ00266 | 1021 | PTZ00266, PTZ00266, NIMA-related protein kinase; P | 3e-04 | |
| pfam03154 | 979 | pfam03154, Atrophin-1, Atrophin-1 family | 3e-04 | |
| pfam09756 | 189 | pfam09756, DDRGK, DDRGK domain | 3e-04 | |
| pfam07946 | 322 | pfam07946, DUF1682, Protein of unknown function (D | 3e-04 | |
| COG1269 | 660 | COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su | 3e-04 | |
| COG5296 | 521 | COG5296, COG5296, Transcription factor involved in | 3e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 4e-04 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 4e-04 | |
| pfam09507 | 427 | pfam09507, CDC27, DNA polymerase subunit Cdc27 | 4e-04 | |
| pfam12037 | 276 | pfam12037, DUF3523, Domain of unknown function (DU | 4e-04 | |
| pfam04006 | 613 | pfam04006, Mpp10, Mpp10 protein | 4e-04 | |
| pfam06375 | 561 | pfam06375, BLVR, Bovine leukaemia virus receptor ( | 4e-04 | |
| COG2268 | 548 | COG2268, COG2268, Uncharacterized protein conserve | 4e-04 | |
| pfam04889 | 241 | pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle cont | 4e-04 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 5e-04 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 5e-04 | |
| pfam02724 | 583 | pfam02724, CDC45, CDC45-like protein | 5e-04 | |
| PRK12705 | 508 | PRK12705, PRK12705, hypothetical protein; Provisio | 5e-04 | |
| pfam09736 | 141 | pfam09736, Bud13, Pre-mRNA-splicing factor of RES | 5e-04 | |
| pfam11671 | 146 | pfam11671, Apis_Csd, Complementary sex determiner | 5e-04 | |
| pfam06991 | 277 | pfam06991, Prp19_bind, Splicing factor, Prp19-bind | 5e-04 | |
| pfam07767 | 387 | pfam07767, Nop53, Nop53 (60S ribosomal biogenesis) | 6e-04 | |
| COG1061 | 442 | COG1061, SSL2, DNA or RNA helicases of superfamily | 6e-04 | |
| COG5271 | 4600 | COG5271, MDN1, AAA ATPase containing von Willebran | 7e-04 | |
| pfam12871 | 97 | pfam12871, PRP38_assoc, Pre-mRNA-splicing factor 3 | 8e-04 | |
| pfam09756 | 189 | pfam09756, DDRGK, DDRGK domain | 8e-04 | |
| pfam05262 | 489 | pfam05262, Borrelia_P83, Borrelia P83/100 protein | 8e-04 | |
| COG0610 | 962 | COG0610, COG0610, Type I site-specific restriction | 8e-04 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 0.001 | |
| pfam08648 | 158 | pfam08648, DUF1777, Protein of unknown function (D | 0.001 | |
| PRK10811 | 1068 | PRK10811, rne, ribonuclease E; Reviewed | 0.001 | |
| pfam04615 | 728 | pfam04615, Utp14, Utp14 protein | 0.001 | |
| TIGR02680 | 1353 | TIGR02680, TIGR02680, TIGR02680 family protein | 0.001 | |
| TIGR02680 | 1353 | TIGR02680, TIGR02680, TIGR02680 family protein | 0.001 | |
| PRK05035 | 695 | PRK05035, PRK05035, electron transport complex pro | 0.001 | |
| pfam08017 | 393 | pfam08017, Fibrinogen_BP, Fibrinogen binding prote | 0.001 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 0.002 | |
| TIGR00927 | 1096 | TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | 0.002 | |
| PHA02896 | 616 | PHA02896, PHA02896, A-type inclusion like protein; | 0.002 | |
| pfam09756 | 189 | pfam09756, DDRGK, DDRGK domain | 0.002 | |
| pfam06375 | 561 | pfam06375, BLVR, Bovine leukaemia virus receptor ( | 0.002 | |
| PRK12705 | 508 | PRK12705, PRK12705, hypothetical protein; Provisio | 0.002 | |
| TIGR01554 | 384 | TIGR01554, major_cap_HK97, phage major capsid prot | 0.002 | |
| TIGR00643 | 630 | TIGR00643, recG, ATP-dependent DNA helicase RecG | 0.002 | |
| TIGR03319 | 514 | TIGR03319, RNase_Y, ribonuclease Y | 0.002 | |
| pfam04514 | 363 | pfam04514, BTV_NS2, Bluetongue virus non-structura | 0.002 | |
| TIGR00606 | 1311 | TIGR00606, rad50, rad50 | 0.002 | |
| PRK04195 | 482 | PRK04195, PRK04195, replication factor C large sub | 0.002 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 0.003 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 0.003 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 0.003 | |
| COG5271 | 4600 | COG5271, MDN1, AAA ATPase containing von Willebran | 0.003 | |
| pfam05793 | 528 | pfam05793, TFIIF_alpha, Transcription initiation f | 0.003 | |
| PRK12585 | 197 | PRK12585, PRK12585, putative monovalent cation/H+ | 0.004 | |
| pfam05672 | 171 | pfam05672, MAP7, MAP7 (E-MAP-115) family | 0.004 | |
| pfam00769 | 244 | pfam00769, ERM, Ezrin/radixin/moesin family | 0.004 | |
| pfam06495 | 182 | pfam06495, Transformer, Fruit fly transformer prot | 0.004 | |
| pfam05764 | 238 | pfam05764, YL1, YL1 nuclear protein | 0.004 |
| >gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional | Back alignment and domain information |
|---|
Score = 447 bits (1151), Expect = e-145
Identities = 207/463 (44%), Positives = 298/463 (64%), Gaps = 11/463 (2%)
Query: 413 KLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKI-HGKDVPKPIKTWHQ 471
+L +D I+ PF KNFY E E++ ++ +EV RK+ E+ I G++VPKP+ ++
Sbjct: 75 RLQPIDWKSINLVPFEKNFYKEHPEVSALSSKEVDEIRKEKEITIIAGENVPKPVVSFEY 134
Query: 472 TGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKD 531
T I+++++ + +P PIQ Q P+ +SGRD IG+A+TGSGKTLAF+LP + HI
Sbjct: 135 TSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINA 194
Query: 532 QPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGT 591
QP + GDGP+ L++APTREL +QI KF +R YGG QI L+RG
Sbjct: 195 QPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGV 254
Query: 592 EIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQT 651
EI++ PGR+ID L ++ +TNLRRVTYLV+DEADRM DMGFEPQI +IV IRPDRQT
Sbjct: 255 EILIACPGRLIDFLESN---VTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQT 311
Query: 652 VLFSATFPRQVEILARKVL-NKPVEIQVGGRSV-VNKDITQLVEVRPESDRFLRLLELLG 709
+++SAT+P++V+ LAR + +PV + VG + +I Q V V E ++ +L LL
Sbjct: 312 LMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQ 371
Query: 710 EWYEKG-KILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLL 768
G KILIFV +++ D L ++L G+P L +HG K Q +R +++FK+ ++
Sbjct: 372 RIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIM 431
Query: 769 IATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPD 828
IAT VA+RGLDVK+++ VINFD PN EDYVHR+GRTGRAG KG + TF++ + + + D
Sbjct: 432 IATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARD 491
Query: 829 LVKALELSEQVVPDDLKALADSFMAKVNQGLEQAHGTGYGGSG 871
LVK L ++Q VP +L+ L++ + G E+ GYG
Sbjct: 492 LVKVLREAKQPVPPELEKLSNE----RSNGTERRRWGGYGRFS 530
|
Length = 545 |
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 382 bits (983), Expect = e-121
Identities = 173/457 (37%), Positives = 252/457 (55%), Gaps = 20/457 (4%)
Query: 450 RKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIG 509
K + K + GL+ ++++ ++ L +E+P PIQ A+P+I++GRD +G
Sbjct: 12 LKSAHNVALSRGEEKTPPEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLG 71
Query: 510 VAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM-G 568
A+TG+GKT AF+LP+L+ I LI+APTREL QI ++RK K + G
Sbjct: 72 QAQTGTGKTAAFLLPLLQKILKSVER---KYVSALILAPTRELAVQIAEELRKLGKNLGG 128
Query: 569 VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADR 628
+R VYGG + +QI LKRG +IVV TPGR++D++ +L V LV+DEADR
Sbjct: 129 LRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLI---KRGKLDLSGVETLVLDEADR 185
Query: 629 MFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGR--SVVNK 686
M DMGF I +I++ + PDRQT+LFSAT P + LAR+ LN PVEI+V K
Sbjct: 186 MLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLK 245
Query: 687 DITQ-LVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLH 745
I Q +EV E ++ LL+LL + ++G++++FV ++ + L L K G+ +LH
Sbjct: 246 KIKQFYLEVESEEEKLELLLKLLKD-EDEGRVIVFVRTKRLVEELAESLRKRGFKVAALH 304
Query: 746 GAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRT 805
G Q +R+ + FK +L+AT VAARGLD+ ++ VIN+D P EDYVHR+GRT
Sbjct: 305 GDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRT 364
Query: 806 GRAGRKGCAITFI-SEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAKVNQGLEQAHG 864
GRAGRKG AI+F+ EE+ K + K LE L +
Sbjct: 365 GRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLP-SAVLLPLDEPEDAKLLKTTRP---- 419
Query: 865 TGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEEDKSD 901
G +E +K K++KKA + G S
Sbjct: 420 ---GLEEESDISDEIKKLKSSKKALLRGLGVRFTLSK 453
|
Length = 513 |
| >gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases | Back alignment and domain information |
|---|
Score = 288 bits (739), Expect = 2e-90
Identities = 106/208 (50%), Positives = 143/208 (68%), Gaps = 6/208 (2%)
Query: 469 WHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRH 528
+ + GL+ +++ I L +EKP PIQA+A+P ++SGRD IG A+TGSGKT AF++P+L
Sbjct: 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEK 60
Query: 529 IKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELK 588
+ P DGP LI+APTREL QI RK K ++ V +YGG+ + +QI +LK
Sbjct: 61 LDPSPKK---DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK 117
Query: 589 RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD 648
RG IVV TPGR++D+L GK+ +L +V YLV+DEADRM DMGFE QI I++ + D
Sbjct: 118 RGPHIVVATPGRLLDLL--ERGKL-DLSKVKYLVLDEADRMLDMGFEDQIREILKLLPKD 174
Query: 649 RQTVLFSATFPRQVEILARKVLNKPVEI 676
RQT+LFSAT P++V LARK L PV I
Sbjct: 175 RQTLLFSATMPKEVRDLARKFLRNPVRI 202
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. Length = 203 |
| >gnl|CDD|236977 PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Score = 290 bits (746), Expect = 7e-88
Identities = 140/381 (36%), Positives = 223/381 (58%), Gaps = 23/381 (6%)
Query: 474 LTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIK-DQ 532
L ++ + +L Y + PIQAQ+LP I++G+D I AKTGSGKT AF L +L+ + +
Sbjct: 11 LPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR 70
Query: 533 PPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGT 591
V A L++ PTREL Q+ +IR+ A+ + ++ + + GG + QI L+ G
Sbjct: 71 FRVQA------LVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGA 124
Query: 592 EIVVCTPGRMIDILCTSGGKIT-NLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQ 650
I+V TPGR++D L K T +L + LV+DEADRM DMGF+ I I++ RQ
Sbjct: 125 HIIVGTPGRILDHL----RKGTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPARRQ 180
Query: 651 TVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLV-EVRPESDRFLRLLELLG 709
T+LFSAT+P + ++++ PVE++V + I Q EV P+ +R L LL
Sbjct: 181 TLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPA-IEQRFYEVSPD-ERLPALQRLLL 238
Query: 710 EWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLI 769
++ ++F +++++C + L G+ L+LHG +Q DR+ + F + C++L+
Sbjct: 239 H-HQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLV 297
Query: 770 ATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDL 829
AT VAARGLD+K LE VIN++ E +VHR+GRTGRAG KG A++ ++ E+ +
Sbjct: 298 ATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQ----R 353
Query: 830 VKALE--LSEQVVPDDLKALA 848
A+E L ++ + L +L+
Sbjct: 354 ANAIEDYLGRKLNWEPLPSLS 374
|
Length = 460 |
| >gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Score = 264 bits (677), Expect = 3e-78
Identities = 143/366 (39%), Positives = 221/366 (60%), Gaps = 11/366 (3%)
Query: 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQ 532
GL+ I+ + + Y +P PIQ QA+P ++ GRD + A+TG+GKT F LP+L+H+ +
Sbjct: 7 GLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITR 66
Query: 533 PPVAAGDGPV-GLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGT 591
P A G PV LI+ PTREL QI ++R ++K + +R + V+GG + Q+ +L+ G
Sbjct: 67 QPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGV 126
Query: 592 EIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQT 651
+++V TPGR++D+ L +V LV+DEADRM DMGF I R++ + RQ
Sbjct: 127 DVLVATPGRLLDL---EHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQN 183
Query: 652 VLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELL--- 708
+LFSATF ++ LA K+L+ P+EI+V R+ ++ +TQ V + R LL +
Sbjct: 184 LLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHF-VDKKRKRELLSQMIGK 242
Query: 709 GEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLL 768
G W + +L+F ++ + L L K G ++HG K Q R ++DFKS +L
Sbjct: 243 GNWQQ---VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVL 299
Query: 769 IATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPD 828
+AT +AARGLD++EL V+N++ PN EDYVHR+GRTGRA G A++ + ++ K D
Sbjct: 300 VATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRD 359
Query: 829 LVKALE 834
+ K L+
Sbjct: 360 IEKLLK 365
|
Length = 456 |
| >gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Score = 239 bits (613), Expect = 1e-69
Identities = 144/437 (32%), Positives = 213/437 (48%), Gaps = 19/437 (4%)
Query: 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPML 526
T+ + L ++E ++ Y +P IQA+A+P + GRD +G A TG+GKT AF+LP L
Sbjct: 1 TTFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPAL 60
Query: 527 RHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISE 586
+H+ D P +G P LI+ PTREL Q+ R+ AK + + GG
Sbjct: 61 QHLLDFPRRKSGP-PRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEV 119
Query: 587 LKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646
+IVV TPGR++ + + R V L++DEADRM DMGF I I R
Sbjct: 120 FSENQDIVVATPGRLLQYIKEEN---FDCRAVETLILDEADRMLDMGFAQDIETIAAETR 176
Query: 647 PDRQTVLFSATFP-RQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLL 705
+QT+LFSAT V+ A ++LN PVE++ K I Q + + LL
Sbjct: 177 WRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALL 236
Query: 706 ELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVC 765
L + E + ++FV ++E+ L L K G C L G Q R I
Sbjct: 237 CHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRV 296
Query: 766 NLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKY 825
N+L+AT VAARG+D+ ++ VINFD P + Y+HR+GRTGRAGRKG AI+ + D
Sbjct: 297 NVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLL 356
Query: 826 SPDLVKALELSEQVVPDDLKALADSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEKRKAA 885
L E+ + + LK A+V L K +++ KR
Sbjct: 357 -------LGKIERYIEEPLK-------ARVIDELRPKTKAPSEKKTGKPSKKVLAKRAEK 402
Query: 886 KKAQAKEYGFEEDKSDS 902
K+ + ++ ++ D+
Sbjct: 403 KEKEKEKPKVKKRHRDT 419
|
Length = 434 |
| >gnl|CDD|215103 PLN00206, PLN00206, DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Score = 242 bits (618), Expect = 1e-69
Identities = 146/465 (31%), Positives = 237/465 (50%), Gaps = 25/465 (5%)
Query: 396 DEDDDE---------FMKRVKKTKAEKLSIVDHSKIDYQPFR-KNFYIEVKEI-ARMTPE 444
DE DD+ ++RV K++ V K P + FY+ + ++
Sbjct: 43 DETDDDICSLECKQALLRRVAKSRVA----VGAPKPKRLPATDECFYVRDPGSTSGLSSS 98
Query: 445 EVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG 504
+ R++LE+ + G+ VP PI ++ GL K++ + YE P PIQ QA+P +SG
Sbjct: 99 QAELLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSG 158
Query: 505 RDCIGVAKTGSGKTLAFVLPMLRH---IKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIR 561
R + A TGSGKT +F++P++ I+ P + P+ +++ PTREL Q+ +
Sbjct: 159 RSLLVSADTGSGKTASFLVPIISRCCTIRSGHP-SEQRNPLAMVLTPTRELCVQVEDQAK 217
Query: 562 KFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYL 621
K + + V GG + QQ+ +++G E++V TPGR+ID+L L V+ L
Sbjct: 218 VLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHD---IELDNVSVL 274
Query: 622 VMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGR 681
V+DE D M + GF Q+ +I Q + Q +LFSAT +VE A + + I +G
Sbjct: 275 VLDEVDCMLERGFRDQVMQIFQAL-SQPQVLLFSATVSPEVEKFASSLAKDIILISIGNP 333
Query: 682 SVVNKDITQLVEVRPESDRFLRLLELL-GEWYEKGKILIFVHSQEKCDALFRDLLK-HGY 739
+ NK + QL + +L ++L + + K ++FV S+ D L + G
Sbjct: 334 NRPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGL 393
Query: 740 PCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYV 799
LS+HG K +R + F +++AT V RG+D+ + VI FD PN ++Y+
Sbjct: 394 KALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYI 453
Query: 800 HRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDL 844
H++GR R G KG AI F++EED P+LV L+ S +P +L
Sbjct: 454 HQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKSSGAAIPREL 498
|
Length = 518 |
| >gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Score = 233 bits (597), Expect = 1e-65
Identities = 169/475 (35%), Positives = 253/475 (53%), Gaps = 44/475 (9%)
Query: 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQ 532
GL + I+E + L YEKP PIQA+ +P +++GRD +G+A+TGSGKT AF LP+L ++
Sbjct: 12 GLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLD-- 69
Query: 533 PPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGT 591
P + A P L++APTREL Q+ + F+K M GV V +YGG Q+ L++G
Sbjct: 70 PELKA---PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126
Query: 592 EIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQT 651
+IVV TPGR++D L ++ L LV+DEAD M MGF + I+ I QT
Sbjct: 127 QIVVGTPGRLLDHLKRGTLDLSKLSG---LVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183
Query: 652 VLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQ---LVEVRPESDRFLRLLELL 708
LFSAT P + + R+ + +P E+++ DI+Q V +++ +R LE
Sbjct: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE-- 241
Query: 709 GEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLL 768
E ++ +IFV ++ + L ++GY +L+G +Q RE T+ K ++L
Sbjct: 242 AEDFDAA--IIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299
Query: 769 IATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPD 828
IAT VAARGLDV+ + LV+N+D P E YVHR+GRTGRAGR G A+ F+ + + +
Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359
Query: 829 LVKALELS--EQVVPD-DL--KALADSFMAKVNQGLEQAHGTGYGGSGFKF-----NEEE 878
+ + ++L+ E +P+ +L K + F AKV Q LE + Y K EE
Sbjct: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPTAEGEEL 419
Query: 879 DEKRKAA---KKAQA---------------KEYGFEEDKSDSDDEDEGIRKAGGD 915
D + AA K AQ +E+ +D+ D D G R D
Sbjct: 420 DLETLAAALLKMAQGERPLILPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDRED 474
|
Length = 629 |
| >gnl|CDD|235314 PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 227 bits (582), Expect = 1e-65
Identities = 126/364 (34%), Positives = 193/364 (53%), Gaps = 26/364 (7%)
Query: 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQ 532
L +++E + K + PIQA ALP+ ++GRD G A+TG+GKT+AF+ ++
Sbjct: 14 ALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLL-S 72
Query: 533 PPVAAG---DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKR 589
P + P LIMAPTREL QIH+D A+ G++ YGG G +Q+ L+
Sbjct: 73 HPAPEDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLES 132
Query: 590 GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR--- 646
G +I++ T GR+ID NL + +V+DEADRMFD+GF +++IR
Sbjct: 133 GVDILIGTTGRLIDYA---KQNHINLGAIQVVVLDEADRMFDLGF-------IKDIRWLF 182
Query: 647 ---PD---RQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDR 700
P R +LFSAT +V LA + +N P ++V I + + ++
Sbjct: 183 RRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEK 242
Query: 701 FLRLLELLGE-WYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISD 759
L L+ E W ++ +IF +++ +C+ ++ L G+ L G Q R + +
Sbjct: 243 MRLLQTLIEEEWPDRA--IIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEE 300
Query: 760 FKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFIS 819
F ++L+AT VAARGL + + V N+D P+ EDYVHR+GRTGRAG G +I+
Sbjct: 301 FTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLAC 360
Query: 820 EEDA 823
EE A
Sbjct: 361 EEYA 364
|
Length = 423 |
| >gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 228 bits (583), Expect = 3e-65
Identities = 138/393 (35%), Positives = 216/393 (54%), Gaps = 18/393 (4%)
Query: 463 PKPIKT-WHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAF 521
P+ KT +H L ++M I L + PIQAQ L ++G D IG A+TG+GKT AF
Sbjct: 82 PQEGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAF 141
Query: 522 VLPMLRHIKDQPPVAA---GDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGS 578
++ ++ + PP G+ P LI+APTRELV QI D K G+ + GG
Sbjct: 142 LISIINQLLQTPPPKERYMGE-PRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGM 200
Query: 579 GVAQQISELK-RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQ 637
+Q+ +L+ R +I+V TPGR++D + +L V +V+DEADRM DMGF PQ
Sbjct: 201 DFDKQLKQLEARFCDILVATPGRLLDF---NQRGEVHLDMVEVMVLDEADRMLDMGFIPQ 257
Query: 638 ITRIVQNIRP--DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVR 695
+ +I++ +RQT+LFSATF V LA++ P +++ +V + + Q V
Sbjct: 258 VRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAV 317
Query: 696 PESDRFLRLLELLGE--WYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDR 753
SD++ L L+ + W ++++F + +++ + L+K G L G Q R
Sbjct: 318 AGSDKYKLLYNLVTQNPW---ERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKR 374
Query: 754 ESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGC 813
T+ F+ +L+AT VA RG+ + + VINF P +DYVHR+GRTGRAG G
Sbjct: 375 IKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGV 434
Query: 814 AITFISEEDAKYSPDLVKAL--ELSEQVVPDDL 844
+I+F E+DA P++ + L ++S ++ P +L
Sbjct: 435 SISFAGEDDAFQLPEIEELLGRKISCEMPPAEL 467
|
Length = 475 |
| >gnl|CDD|185609 PTZ00424, PTZ00424, helicase 45; Provisional | Back alignment and domain information |
|---|
Score = 215 bits (550), Expect = 1e-61
Identities = 127/354 (35%), Positives = 194/354 (54%), Gaps = 16/354 (4%)
Query: 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQ 532
L ++ I +EKP IQ + + I+ G D IG A++G+GKT FV+ L+ I
Sbjct: 34 KLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLI--D 91
Query: 533 PPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTE 592
+ A LI+APTREL QQI + + VRC GG+ V I++LK G
Sbjct: 92 YDLNACQA---LILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVH 148
Query: 593 IVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTV 652
+VV TPGR+ D++ ++ +L+ ++DEAD M GF+ QI + + + PD Q
Sbjct: 149 MVVGTPGRVYDMIDKRHLRVDDLK---LFILDEADEMLSRGFKGQIYDVFKKLPPDVQVA 205
Query: 653 LFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQL-VEVRPESDRFLRLLELLGEW 711
LFSAT P ++ L K + P I V + + I Q V V E +F L +L
Sbjct: 206 LFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDL---- 261
Query: 712 YEKGKI---LIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLL 768
YE I +I+ +++ K D L + + + + +HG DQ DR+ + +F+S +L
Sbjct: 262 YETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVL 321
Query: 769 IATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEED 822
I T + ARG+DV+++ LVIN+D P E+Y+HR+GR+GR GRKG AI F++ +D
Sbjct: 322 ITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDD 375
|
Length = 401 |
| >gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase | Back alignment and domain information |
|---|
Score = 205 bits (524), Expect = 4e-61
Identities = 79/175 (45%), Positives = 119/175 (68%), Gaps = 8/175 (4%)
Query: 492 PIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRE 551
PIQAQA+P I+SG+D + A TGSGKTLAF+LP+L+ + + GP L++APTRE
Sbjct: 2 PIQAQAIPAILSGKDVLVQAPTGSGKTLAFLLPILQALLPKK-----GGPQALVLAPTRE 56
Query: 552 LVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGT-EIVVCTPGRMIDILCTSGG 610
L +QI+ +++K K++G+R + GG+ + +Q +LK+G +I+V TPGR++D+L G
Sbjct: 57 LAEQIYEELKKLFKILGLRVALLTGGTSLKEQARKLKKGKADILVGTPGRLLDLL--RRG 114
Query: 611 KITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEIL 665
K+ L+ + LV+DEA R+ DMGF + I+ + PDRQ +L SAT PR +E L
Sbjct: 115 KLKLLKNLKLLVLDEAHRLLDMGFGDDLEEILSRLPPDRQILLLSATLPRNLEDL 169
|
Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. Length = 169 |
| >gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 217 bits (553), Expect = 3e-60
Identities = 163/508 (32%), Positives = 250/508 (49%), Gaps = 25/508 (4%)
Query: 492 PIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVA--AGDGPVGLIMAPT 549
PIQA LPV + G D G A+TG+GKTLAF++ ++ + +P +A + P LI+APT
Sbjct: 34 PIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPT 93
Query: 550 RELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSG 609
REL QIH D KF +G+R VYGG +Q L++G ++++ TPGR+ID +
Sbjct: 94 RELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYV--KQ 151
Query: 610 GKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI--RPDRQTVLFSATFPRQVEILAR 667
K+ +L V+DEADRMFD+GF I +++ + R RQT+LFSAT +V LA
Sbjct: 152 HKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAY 211
Query: 668 KVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKC 727
+ +N+P ++ V ++ + Q + + ++ LL LL E + ++FV+++
Sbjct: 212 EHMNEPEKLVVETETITAARVRQRIYFPADEEKQTLLLGLLSR-SEGARTMVFVNTKAFV 270
Query: 728 DALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVI 787
+ + R L +HGY L G Q RES ++ F+ +L+AT VAARGL + ++ V
Sbjct: 271 ERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVY 330
Query: 788 NFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALEL---SEQVVPDDL 844
N+D P EDYVHR+GRT R G +G AI+F E A PD+ +E E V + L
Sbjct: 331 NYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIPVEPVTAELL 390
Query: 845 KALADSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEEDKSDSDD 904
L V G+ F+ E E+R A ++ + S S
Sbjct: 391 TPLPRPPRVPVEGEEADDEAGDSVGTIFR---EAREQRAAEEQRRGGGRSGPGGGSRSGS 447
Query: 905 EDEGIRKAGGDISQQDALAKISAIAAASKASASMP-TPISAAQLLPNAGLPISLPGVL-- 961
G R+ G + + + + A+A+ TP+ AA G+ + G
Sbjct: 448 VGGGGRRDGAGADGKPRPRRKPRVEGEADAAAAGAETPVVAAAAAQAPGVV-AADGERAP 506
Query: 962 --------GLSIPGAAPTVSATGLPVVP 981
G + GA P + P P
Sbjct: 507 RKRRRRRNGRPVEGAEPVSTPVPAPAAP 534
|
Length = 572 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 187 bits (477), Expect = 2e-54
Identities = 77/211 (36%), Positives = 119/211 (56%), Gaps = 13/211 (6%)
Query: 482 IRKLNYEKPMPIQAQALPVIMSG-RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDG 540
I K +E P Q +A+ ++SG RD I A TGSGKTLA +LP L +K G
Sbjct: 1 IEKFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK------G 54
Query: 541 PVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRG-TEIVVCTPG 599
L++ PTREL +Q +++K +G++ V +YGG +Q+ +L+ G T+I+V TPG
Sbjct: 55 GRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPG 114
Query: 600 RMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFP 659
R++D+L +L V +++DEA R+ D GF Q+ ++++ + + Q +L SAT P
Sbjct: 115 RLLDLLEN---DKLSLSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPP 171
Query: 660 RQVEILARKVLNKPVEIQVGGRSVVNKDITQ 690
++E L LN PV I VG + I Q
Sbjct: 172 EEIENLLELFLNDPVFIDVGFT--PLEPIEQ 200
|
Length = 201 |
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 147 bits (372), Expect = 7e-41
Identities = 55/154 (35%), Positives = 85/154 (55%), Gaps = 10/154 (6%)
Query: 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564
RD + A TGSGKTLA +LP+L + G L++APTREL Q+ +++
Sbjct: 1 RDVLLAAPTGSGKTLAALLPILELLDSL------KGGQVLVLAPTRELANQVAERLKELF 54
Query: 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624
G++ + GG+ + QQ L T+IVV TPGR++D L +L+++ L++D
Sbjct: 55 GE-GIKVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDEL---ERLKLSLKKLDLLILD 110
Query: 625 EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF 658
EA R+ + GF +I+ + DRQ +L SAT
Sbjct: 111 EAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Length = 144 |
| >gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 2e-35
Identities = 53/132 (40%), Positives = 74/132 (56%), Gaps = 2/132 (1%)
Query: 687 DITQLVEVRPESDRFLRLLELL-GEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLH 745
I Q V + E ++ LLELL + GK+LIF S++ D L L K G +LH
Sbjct: 1 PIKQYV-LPVEDEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALH 59
Query: 746 GAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRT 805
G Q +RE + DF+ +L+AT V ARG+D+ + +VIN+D P Y+ R+GR
Sbjct: 60 GDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRA 119
Query: 806 GRAGRKGCAITF 817
GRAG+KG AI
Sbjct: 120 GRAGQKGTAILL 131
|
Length = 131 |
| >gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 1e-25
Identities = 33/76 (43%), Positives = 47/76 (61%)
Query: 734 LLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPN 793
L K G LHG Q +RE + DF++ +L+AT VA RG+D+ ++ LVIN+D P
Sbjct: 3 LRKPGIKVARLHGGLSQEEREEILEDFRNGKSKVLVATDVAGRGIDLPDVNLVINYDLPW 62
Query: 794 HYEDYVHRVGRTGRAG 809
+ Y+ R+GR GRAG
Sbjct: 63 NPASYIQRIGRAGRAG 78
|
The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. Length = 78 |
| >gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 2e-22
Identities = 32/82 (39%), Positives = 45/82 (54%)
Query: 728 DALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVI 787
+ L L + G LHG Q +RE + F + +L+AT VA RGLD+ ++LVI
Sbjct: 1 EELAELLKELGIKVARLHGGLSQEEREEILDKFNNGKIKVLVATDVAERGLDLPGVDLVI 60
Query: 788 NFDAPNHYEDYVHRVGRTGRAG 809
+D P Y+ R+GR GRAG
Sbjct: 61 IYDLPWSPASYIQRIGRAGRAG 82
|
Length = 82 |
| >gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Score = 98.1 bits (245), Expect = 9e-21
Identities = 42/182 (23%), Positives = 69/182 (37%), Gaps = 8/182 (4%)
Query: 2 AHSHRDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHR-DRDRRRDRDRDRD 60
A + + RE+ + R + + E E +R +RD R
Sbjct: 115 AAEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRR 174
Query: 61 REKEREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKD 120
R + + E R + RE+R R+ +DR+R RE+ R +R R R R + +D
Sbjct: 175 RGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRD 234
Query: 121 RERKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESP 180
R D + + + D D + R+ RR D R+R R +E +
Sbjct: 235 RRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRD-------RDRRGRRGGDGGNEREPEL 287
Query: 181 RE 182
RE
Sbjct: 288 RE 289
|
Length = 672 |
| >gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 3e-17
Identities = 34/201 (16%), Positives = 65/201 (32%), Gaps = 2/201 (0%)
Query: 6 RDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKER 65
R ++ + + + + + + R+R R R+
Sbjct: 88 RQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGAARKAGE 147
Query: 66 EEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKS 125
++ + E+ + E D R R +R+ E+ RE DR+R+
Sbjct: 148 GGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRD 207
Query: 126 RDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLV 185
R + R+ E D R R+RRR D + RE R + +
Sbjct: 208 RREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRR-- 265
Query: 186 EDDSDKKEKKTREEELEDEQR 206
D D++ ++ + E E
Sbjct: 266 FRDRDRRGRRGGDGGNEREPE 286
|
Length = 672 |
| >gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor | Back alignment and domain information |
|---|
Score = 85.7 bits (212), Expect = 3e-17
Identities = 42/129 (32%), Positives = 58/129 (44%), Gaps = 18/129 (13%)
Query: 53 RDRDRDRDREKEREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERE 112
RD + DR+REK R R+R+ E+ R R R+R R R+R RR R+R + R
Sbjct: 1 RDEEPDREREKSRGRDRDRSSERPRRRS--------RDRSRFRDRHRRSRERSYREDSRP 52
Query: 113 RDRDKEKDRERKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRH 172
RDR + R +S R + RDR RRR E+ R R RS +
Sbjct: 53 RDRRRYDSRSPRSLRYSSVR----------RSRDRPRRRSRSVRSIEQHRRRLRDRSPSN 102
Query: 173 RDENDESPR 181
+ D+ R
Sbjct: 103 QWRKDDKKR 111
|
These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi. Length = 509 |
| >gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor | Back alignment and domain information |
|---|
Score = 81.5 bits (201), Expect = 8e-16
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 10/117 (8%)
Query: 18 REKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDRE----KEREEKRERAR 73
R++ ERE+S D+++ ++ R R R R R RDR R RE+ R R R
Sbjct: 1 RDEEPDREREKSRG-----RDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDR 55
Query: 74 EKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRDREK 130
+ R R R R+R R RR R ++ R R RD+ + + D+++
Sbjct: 56 RRYDSRSPRSLRYSSVRRSRDRPR-RRSRSVRSIEQHRRRLRDRSPSNQWRKDDKKR 111
|
These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi. Length = 509 |
| >gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor | Back alignment and domain information |
|---|
Score = 81.5 bits (201), Expect = 8e-16
Identities = 35/111 (31%), Positives = 61/111 (54%), Gaps = 2/111 (1%)
Query: 41 KEKDKHRDRDRRRDRDRDRDREKEREEKRERAREKEREREKRDRER--EDRERERERERE 98
++++ R+R++ R RDRDR E+ R R+R+R ++R R R+R + R R+R R
Sbjct: 1 RDEEPDREREKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDS 60
Query: 99 RRERDREREKRERERDRDKEKDRERKSRDREKRRKVESDDSDEDKDRDRKR 149
R R R RDR + + R +S ++ +RR + S++ + D+KR
Sbjct: 61 RSPRSLRYSSVRRSRDRPRRRSRSVRSIEQHRRRLRDRSPSNQWRKDDKKR 111
|
These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi. Length = 509 |
| >gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 1e-14
Identities = 42/243 (17%), Positives = 70/243 (28%), Gaps = 30/243 (12%)
Query: 4 SHRDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREK 63
+ R + + ++ + + + +
Sbjct: 72 APAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERR 131
Query: 64 EREEKRERAREKEREREKRDREREDRERERER-ERERRERDREREKRERERDRDKEKDRE 122
ER E R ++ E R ER E E R+ R R RE + + +R
Sbjct: 132 ERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERG 191
Query: 123 RKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPRE 182
R+ + D E DR +R RR D + R R R R + D+N E +
Sbjct: 192 RREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRR--DRRDARGDDNREDRGD 249
Query: 183 KLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGDANV 242
+ +D + +R RR R ++ R N
Sbjct: 250 RDGDDG--------------------EGRGGRRGRR-------FRDRDRRGRRGGDGGNE 282
Query: 243 EEP 245
EP
Sbjct: 283 REP 285
|
Length = 672 |
| >gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 1e-14
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 9/120 (7%)
Query: 43 KDKHRDRDRRRDRDRDRDREKEREEKRERAREKEREREKRDREREDRERERERERERRER 102
+D+ DR+R + R RDRDR ER +R R R + R+R R +R RE R R R
Sbjct: 1 RDEEPDREREKSRGRDRDRSSERPRRRSRDRSRFRDR---HRRSRERSY-REDSRPRDRR 56
Query: 103 DREREKRERERDRDKEKDRERKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVR 162
+ R R+SRDR +RR ++ + R R R + ++ R
Sbjct: 57 RYDSRSP-----RSLRYSSVRRSRDRPRRRSRSVRSIEQHRRRLRDRSPSNQWRKDDKKR 111
|
These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi. Length = 509 |
| >gnl|CDD|224122 COG1201, Lhr, Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 3e-14
Identities = 85/347 (24%), Positives = 140/347 (40%), Gaps = 39/347 (11%)
Query: 484 KLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVG 543
K + P Q A+P I SG + + +A TGSGKT A LP++ + DG
Sbjct: 17 KRKFTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYA 76
Query: 544 LIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISE-LKRGTEIVVCTPGRMI 602
L ++P + L I + + + +G+ V V G + + LK I++ TP +
Sbjct: 77 LYISPLKALNNDIRRRLEEPLRELGIE-VAVRHGDTPQSEKQKMLKNPPHILITTP-ESL 134
Query: 603 DILCTSGGKITNLRRVTYLVMDEADRMFD--------MGFEPQITRIVQNIRPDRQTVLF 654
IL S LR V Y+++DE + + + E R+ + + D Q +
Sbjct: 135 AILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALSLE----RL-RELAGDFQRIGL 189
Query: 655 SAT-------------FPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRF 701
SAT F EI+ K +EI+V S V I +
Sbjct: 190 SATVGPPEEVAKFLVGFGDPCEIV-DVSAAKKLEIKV--ISPVEDLIYDEELWA---ALY 243
Query: 702 LRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLK-HGYPCLSLHGAKDQTDRESTISDF 760
R+ EL+ + LIF +++ + L L K HG+ + R
Sbjct: 244 ERIAELVK---KHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERL 300
Query: 761 KSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGR 807
K ++ATS G+D+ +++LVI +P ++ R+GR G
Sbjct: 301 KEGELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGH 347
|
Length = 814 |
| >gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 7e-14
Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 6/115 (5%)
Query: 34 EDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEKRERAREKEREREKRDREREDRERER 93
E ++EK + + RDR R R R RDR + R+ R R +ER + R R+R R
Sbjct: 4 EPDREREKSRGRDRDRSSERPRRRSRDRSRFRDRHR---RSRERSYREDSR---PRDRRR 57
Query: 94 ERERERRERDREREKRERERDRDKEKDRERKSRDREKRRKVESDDSDEDKDRDRK 148
R R +R R+R R + + + R + R + D+ R
Sbjct: 58 YDSRSPRSLRYSSVRRSRDRPRRRSRSVRSIEQHRRRLRDRSPSNQWRKDDKKRS 112
|
These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi. Length = 509 |
| >gnl|CDD|129701 TIGR00614, recQ_fam, ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 4e-13
Identities = 77/354 (21%), Positives = 141/354 (39%), Gaps = 46/354 (12%)
Query: 487 YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546
P+Q + + ++ GRDC V TG GK+L + LP A + L++
Sbjct: 9 LSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLP-----------ALCSDGITLVI 57
Query: 547 APTREL----VQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ---ISELKRGT-EIVVCTP 598
+P L V Q+ K G+ + QQ +++LK G +++ TP
Sbjct: 58 SPLISLMEDQVLQL--------KASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTP 109
Query: 599 GRMIDILCTSGGKITNL---RRVTYLVMDEADRMFDMG--FEPQITR--IVQNIRPDRQT 651
+ S + L + +T + +DEA + G F P ++ P+
Sbjct: 110 EK----CSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPNVPI 165
Query: 652 VLFSATFPRQV--EILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLR-LLELL 708
+ +AT V +IL + L P +I N EVR ++ + L LL +
Sbjct: 166 MALTATASPSVREDILRQLNLKNP-QIFCTSFDRPN----LYYEVRRKTPKILEDLLRFI 220
Query: 709 GEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLL 768
+ ++ +I+ S++K + + L G + H + + R+ F+ + ++
Sbjct: 221 RKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVV 280
Query: 769 IATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEED 822
+AT G++ ++ VI++ P E Y GR GR G F + D
Sbjct: 281 VATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPAD 334
|
All proteins in this family for which functions are known are 3'-5' DNA-DNA helicases. These proteins are used for recombination, recombinational repair, and possibly maintenance of chromosome stability. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 470 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 71.7 bits (175), Expect = 2e-12
Identities = 50/277 (18%), Positives = 124/277 (44%), Gaps = 4/277 (1%)
Query: 10 REKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEKR 69
R+ E K E +++E + + K ++E+ ++ R + R R + + E+
Sbjct: 1218 RKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEA 1277
Query: 70 ERAREKEREREKRDREREDRERERERERERRERDREREKRE---RERDRDKEKDRERKSR 126
+A E ++ EK+ + + E+++ E +++ E +K + ++ + K+K K +
Sbjct: 1278 RKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKK 1337
Query: 127 DREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVE 186
E ++ E+ ++ + D + E+ +E + +++ + + +E + +
Sbjct: 1338 AEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAK 1397
Query: 187 DDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGDANVEEPK 246
+++ +KK E + +K +E +K+ ++ E K+K EE+++ + EE K
Sbjct: 1398 KKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK 1457
Query: 247 AGRNWTLDREDSDDEEVPQTGKSETDMDADEEPKPSE 283
E++ + + K+E ADE K +E
Sbjct: 1458 KAEEAKKKAEEAKKADEAKK-KAEEAKKADEAKKKAE 1493
|
Length = 2084 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (174), Expect = 3e-12
Identities = 42/260 (16%), Positives = 122/260 (46%)
Query: 11 EKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEKRE 70
E+ K+K E + +E ++ D + + +K + + + ++ + + EK++ ++ +
Sbjct: 1493 EEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELK 1552
Query: 71 RAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRDREK 130
+A E ++ EK+ E + E + R+ + ++ + R + K + E+K + E
Sbjct: 1553 KAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEA 1612
Query: 131 RRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVEDDSD 190
++ E+ E+ + + +++ + K+ E+ + + +E ++ + + +
Sbjct: 1613 KKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEE 1672
Query: 191 KKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGDANVEEPKAGRN 250
K+K ++ E++++K E ++K ++ +ELK+K+ E +++ EE +
Sbjct: 1673 DKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKA 1732
Query: 251 WTLDREDSDDEEVPQTGKSE 270
+E +D++ + K +
Sbjct: 1733 EEAKKEAEEDKKKAEEAKKD 1752
|
Length = 2084 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (166), Expect = 2e-11
Identities = 44/284 (15%), Positives = 127/284 (44%), Gaps = 10/284 (3%)
Query: 6 RDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKER 65
+ E E +++ +E + + + K+K + + ++ D + + +E
Sbjct: 1344 AAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEED 1403
Query: 66 EEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKS 125
++K + ++ ++K D ++ E +++ + +++ + ++ E ++ ++ K E
Sbjct: 1404 KKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAK 1463
Query: 126 RDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLV 185
+ E+ +K + ++ + ++ ++ K++ E + + + + + E
Sbjct: 1464 KKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKK 1523
Query: 186 EDDSDKKEKKTREEELED-EQRKLDEEMEKRR--RRVQEWQELKRKKEESERENRGDANV 242
D++ K E+ + +E + E++K +E++K ++ +E ++ + K+ E +N
Sbjct: 1524 ADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKA 1583
Query: 243 EEPKAGRNWTLDREDSDDEEVPQTGKSETDMDADEEPKPSENQV 286
EE K E++ EEV + + E M A+E K E ++
Sbjct: 1584 EEAKKA-------EEARIEEVMKLYEEEKKMKAEEAKKAEEAKI 1620
|
Length = 2084 |
| >gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3 | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 2e-11
Identities = 31/152 (20%), Positives = 79/152 (51%), Gaps = 2/152 (1%)
Query: 9 DREKEKEKHREKSRRSEREQSTDSDEDKH-DKEKEKDKHRDRDRRRDRDRDRDREKEREE 67
+E+EKEK + K + ++++ + KE+ K+K +++ +++++ + ++REE
Sbjct: 103 GKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREE 162
Query: 68 KRERAREKEREREKRDREREDRERERERERERRERDREREKRER-ERDRDKEKDRERKSR 126
+++R R + + R K+ +++ +++E E ++R RE + + D ++RE++
Sbjct: 163 EKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEEREKEED 222
Query: 127 DREKRRKVESDDSDEDKDRDRKRRRRHDDDHK 158
D + R S +++ + + RR K
Sbjct: 223 DGKDRETTTSPMEEDESRQSSEISRRSSSSLK 254
|
This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506 |
| >gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3 | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 2e-11
Identities = 42/167 (25%), Positives = 73/167 (43%), Gaps = 3/167 (1%)
Query: 7 DRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKERE 66
++ ++KEK K K R+ + E + +KEKEK RDR ++ R+R R K R
Sbjct: 116 EKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRP 175
Query: 67 EKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSR 126
+K + + +++E + E ++R+ RE + + + ERE++ D KDRE +
Sbjct: 176 KKPPKKKPPNKKKEPPEEE---KQRQAAREAVKGKPEEPDVNEEREKEEDDGKDRETTTS 232
Query: 127 DREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHR 173
E+ +S + K+ RE S R R
Sbjct: 233 PMEEDESRQSSEISRRSSSSLKKPDPSPSMASPETRESSKRTETRPR 279
|
This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (165), Expect = 3e-11
Identities = 73/417 (17%), Positives = 175/417 (41%), Gaps = 21/417 (5%)
Query: 10 REKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEKR 69
++ ++ K E+ ++++ + + + +K+K ++ + + + R + K+ EE R
Sbjct: 1534 KKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEAR 1593
Query: 70 ERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRDRE 129
K E EK+ + E ++ E + + + E EK++ E+ + KE + ++K+ + +
Sbjct: 1594 IEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELK 1653
Query: 130 KRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVEDDS 189
K + + E+ + + +++ ++ K E+ + + + E E+ + + ++
Sbjct: 1654 KAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAE--EAKKAEELKKKE 1711
Query: 190 DKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGDAN-VEEPKAG 248
+++KK E + +E+ K+ E K+ E +KK E +++ + + K
Sbjct: 1712 AEEKKKAEELKKAEEENKIKAEEAKKE------AEEDKKKAEEAKKDEEEKKKIAHLKKE 1765
Query: 249 RNWTLDREDSDDEEVPQTGKSETDMDADEEPKPSENQVGDAMLVDSDGGSAAPALQIGAA 308
+ + E V + E D E + D +GG + +
Sbjct: 1766 EEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSK 1825
Query: 309 EDEDIDPLD-AFMNSMVLPEVEKL------KNTVEPSFTDGNNVESKKMDRKGDRRSNGE 361
E ED + A +M L E + KN + +K+ D K D E
Sbjct: 1826 EMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIE 1885
Query: 362 QPKKSSNKSLGR-IIPGEDSDSDYGDLENDEKPLEDEDDDEFMKR-VKKTKAEKLSI 416
+ + + + + I E +++ +N++ + D DE++KR ++T+ E + I
Sbjct: 1886 EADE--IEKIDKDDIEREIPNNNMAG-KNNDIIDDKLDKDEYIKRDAEETREEIIKI 1939
|
Length = 2084 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (162), Expect = 7e-11
Identities = 48/278 (17%), Positives = 110/278 (39%), Gaps = 4/278 (1%)
Query: 10 REKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEKR 69
R+ E+ + E ++++E + + + K +D + R+ + + E + E
Sbjct: 1164 RKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDA 1223
Query: 70 ERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRDR- 128
++A ++ E + E ++ E ER E + E R + K E + D
Sbjct: 1224 KKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADEL 1283
Query: 129 ---EKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLV 185
E+++K + E+K + + +++ ++ K ++ + + D + E
Sbjct: 1284 KKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKK 1343
Query: 186 EDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGDANVEEP 245
++ K E + +E E + K + +K+ ++ K+K EE ++ + EE
Sbjct: 1344 AAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEED 1403
Query: 246 KAGRNWTLDREDSDDEEVPQTGKSETDMDADEEPKPSE 283
K + + + K+E ADE K +E
Sbjct: 1404 KKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAE 1441
|
Length = 2084 |
| >gnl|CDD|223588 COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 9e-11
Identities = 75/346 (21%), Positives = 146/346 (42%), Gaps = 46/346 (13%)
Query: 494 QAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553
Q + + ++SG+D + V TG GK+L + +P L +G L+++P L+
Sbjct: 22 QQEIIDALLSGKDTLVVMPTGGGKSLCYQIPAL----------LLEGLT-LVVSPLISLM 70
Query: 554 Q-QIHSDIRKFAKVMGVRCVPVYGGSGVAQQISE----LKRGT-EIVVCTP-----GRMI 602
+ Q+ + G+R + + ++ + LK G +++ +P R +
Sbjct: 71 KDQVDQ-----LEAAGIRAAYL-NSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFL 124
Query: 603 DILCTSGGKITNLRRVTYLVMDEADRMFDMG--FEPQITRIVQNIR--PDRQTVLFSATF 658
++L ++ + +DEA + G F P R+ + P+ + +AT
Sbjct: 125 ELLKRL--------PISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNPPVLALTATA 176
Query: 659 PRQVEILARKVLN-KPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKI 717
+V R+ L + I G S ++ ++V + + +L L + K
Sbjct: 177 TPRVRDDIREQLGLQDANIFRG--SFDRPNL--ALKVVEKGEPSDQLAFLATVLPQLSKS 232
Query: 718 -LIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAAR 776
+I+ +++K + L L K+G + H +RE F ++ +++AT+
Sbjct: 233 GIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGM 292
Query: 777 GLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEED 822
G+D ++ VI++D P E Y GR GR G AI S ED
Sbjct: 293 GIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPED 338
|
Length = 590 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 65.9 bits (160), Expect = 1e-10
Identities = 46/280 (16%), Positives = 133/280 (47%), Gaps = 6/280 (2%)
Query: 7 DRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKERE 66
D ++K +EK + + + E++ +DE K E+ K + + + + + +K+ E
Sbjct: 1421 DEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAE 1480
Query: 67 EKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSR 126
E ++ K++ E + + E ++ +++ + E K+ E + +E + +++
Sbjct: 1481 EAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAK 1540
Query: 127 DREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVE 186
E+++K + E+ + ++++ + E + +L ++ + + +E+ E++++
Sbjct: 1541 KAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAK-KAEEARIEEVMK 1599
Query: 187 DDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGDANVEEPK 246
++K+ K E + +E + EE++K ++ ++LK+K+ E +++ EE
Sbjct: 1600 LYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEEN 1659
Query: 247 AGRNWTLDREDSDDEEVPQTGKSETDMDADEEPKPSENQV 286
+ ++ +D++ K+E A+E+ K + +
Sbjct: 1660 KIKAAEEAKKAEEDKK-----KAEEAKKAEEDEKKAAEAL 1694
|
Length = 2084 |
| >gnl|CDD|233496 TIGR01622, SF-CC1, splicing factor, CC1-like family | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 1e-10
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 14/104 (13%)
Query: 45 KHRDRDRRRDRDRDRDREKEREEKRERAREKEREREKRDREREDRERERERERERRERDR 104
++RDR+R R R+ R +K RE R R+R ++R R R R+R+ R RR R R
Sbjct: 1 RYRDRERGRLRNDTRRSDKGRERSRRRSRSRDRSR---------RRRDRDYYRGRRGRSR 51
Query: 105 EREKRERERDRDKEKDRERKSRDREKRRKVESDDSDEDKDRDRK 148
R R R R R ++R + + + +RD +
Sbjct: 52 SRSPNRYYRPRGD-----RSYRRDDRRSGRNTKEPLTEAERDDR 90
|
This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed. Length = 457 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (158), Expect = 2e-10
Identities = 47/278 (16%), Positives = 123/278 (44%), Gaps = 5/278 (1%)
Query: 10 REKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEKR 69
+ +E +K E+++++E E++ + + R + + R D K+ EEK+
Sbjct: 1231 KAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKK 1290
Query: 70 ERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRDRE 129
+A E ++ EK+ + ++ E ++ + ++ E K++ + + K ++ ++ + +
Sbjct: 1291 -KADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAK 1349
Query: 130 KRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPRE--KLVED 187
+ +D+++ +++ ++ ++ K+ + + + DE + E K ++
Sbjct: 1350 AEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADE 1409
Query: 188 DSDKKEKKTREEELED--EQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGDANVEEP 245
K + +E + E++K +E +K+ ++ E K+K EE+++ EE
Sbjct: 1410 LKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEA 1469
Query: 246 KAGRNWTLDREDSDDEEVPQTGKSETDMDADEEPKPSE 283
K E++ + + E ADE K +E
Sbjct: 1470 KKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAE 1507
|
Length = 2084 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 2e-10
Identities = 41/245 (16%), Positives = 92/245 (37%), Gaps = 10/245 (4%)
Query: 8 RDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREE 67
+ EKE E+ + + E +E KE+ ++ + R+R + + E E E
Sbjct: 263 EEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELE 322
Query: 68 KRERAREKEREREKRDRERE---DRERERERERERRERDREREKRERERDRDKEKDRERK 124
+R +++ E K + E E E+ ++ EK + +E +
Sbjct: 323 ERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALR 382
Query: 125 SRDREKRRKVESDDSD-----EDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDES 179
E ++ ++ + + +R R + ++ E + +E
Sbjct: 383 EELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAEL--EELQTE 440
Query: 180 PREKLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGD 239
E E + +++ + + L++ +R+L E E+ +R +E L+ + + E E R
Sbjct: 441 LEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRAS 500
Query: 240 ANVEE 244
V
Sbjct: 501 QGVRA 505
|
Length = 1163 |
| >gnl|CDD|224036 COG1111, MPH1, ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 2e-10
Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 13/147 (8%)
Query: 690 QLVEVRPESDRFLRLLELLGEWYEKG---KILIFVHSQEKCDALFRDLLKHGYPCLSL-- 744
+ E E + +L E+L E EK ++++F ++ + + L K G
Sbjct: 339 RADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFI 398
Query: 745 -HGAKD------QTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYED 797
+++ Q +++ I F+ N+L+ATSV GLD+ E++LVI ++
Sbjct: 399 GQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIR 458
Query: 798 YVHRVGRTGRAGRKGCAITFISEEDAK 824
+ R GRTGR RKG + ++E
Sbjct: 459 SIQRKGRTGR-KRKGRVVVLVTEGTRD 484
|
Length = 542 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (156), Expect = 3e-10
Identities = 50/285 (17%), Positives = 124/285 (43%), Gaps = 11/285 (3%)
Query: 10 REKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEKR 69
++K +E + + + E++ +DE K E+ K K + + + + D K+ EE +
Sbjct: 1463 KKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAK 1522
Query: 70 --ERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRD 127
+ A++ E ++ + ++ + +++ + ++ E + EK++ E + E+D+ R
Sbjct: 1523 KADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRK 1582
Query: 128 REKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPRE--KLV 185
E+ +K E +E + ++ ++ K+ + + + +E + + K
Sbjct: 1583 AEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKE 1642
Query: 186 EDDSDKKEKKTREEEL-----EDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGDA 240
++ K E+ + EE +E +K +E+ +K + ++ K+ E ++E
Sbjct: 1643 AEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAK 1702
Query: 241 NVEEPKAGRNWTLDREDS--DDEEVPQTGKSETDMDADEEPKPSE 283
EE K + + EE + E +A+E+ K +E
Sbjct: 1703 KAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAE 1747
|
Length = 2084 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 3e-10
Identities = 53/237 (22%), Positives = 125/237 (52%), Gaps = 15/237 (6%)
Query: 6 RDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKER 65
+ +RE+++++ R + R +EQ + ++ + ++ +E+ + R++ + E E
Sbjct: 57 EEEERERKRKEERREGRAVLQEQIEEREKRRQEEYEERLQEREQMDEIIERIQEEDEAEA 116
Query: 66 EEKRERAREKERE-----REKRDREREDRERERERERERRERDREREKRERERDRDKEKD 120
+EKRE+ ++ E E+ +R+ E++ERERE E + E RE+ +RE ER+ ++ +
Sbjct: 117 QEKREKQKKLREEIDEFNEERIERKEEEKEREREEELKILEYQREKAEREEEREAERRER 176
Query: 121 RERKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESP 180
+E K R+ + R + + DE ++ D R + ++++ + R++ E +E+
Sbjct: 177 KEEKEREVARLRAQQEEAEDEREELDELRADLYQEEYERKERQK----------EKEEAE 226
Query: 181 REKLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENR 237
+ + + + + ++ EE+ E Q + EE +R R +++ E + ++E+ + R
Sbjct: 227 KRRRQKQELQRAREEQIEEKEERLQEERAEEEAERERMLEKQAEDEELEQENAEKRR 283
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor | Back alignment and domain information |
|---|
Score = 63.4 bits (154), Expect = 4e-10
Identities = 33/112 (29%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 100 RERDREREK-RERERDRDKEKDRER-KSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDH 157
E DREREK R R+RDR E+ R R + R R + R S + +D R R RR D
Sbjct: 3 EEPDREREKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYRED-SRPRDRRRYDSR 61
Query: 158 KERVRERSLSRSNRHRDENDESPREKLV-EDDSDKKEKKTREEELEDEQRKL 208
R S R +R R + + + + +D++R L
Sbjct: 62 SPRSLRYSSVRRSRDRPRRRSRSVRSIEQHRRRLRDRSPSNQWRKDDKKRSL 113
|
These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi. Length = 509 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (155), Expect = 4e-10
Identities = 59/299 (19%), Positives = 130/299 (43%), Gaps = 20/299 (6%)
Query: 1 MAHSHRDRDREKEKEKHR-EKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDR 59
MAH R + K +E + ++ +++E ++ D + +K+K + + + + D +
Sbjct: 1262 MAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAK 1321
Query: 60 DREKEREEKRERAREKEREREKRD----REREDRERERERERERRERDREREKRERERDR 115
+ +E ++K + A++K E +K E E E E E+ E ++++ +++
Sbjct: 1322 KKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKAD 1381
Query: 116 DKEKDRERKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDE 175
+K E K + E ++K E D D+ + ++ D+ K++ E+ + + + E
Sbjct: 1382 AAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAE 1441
Query: 176 NDESPRE--------KLVEDDSDKKEKKTREEELE---DEQRKLDEEMEKRRRRVQEWQE 224
+ E K E+ K E+ + +E + +E +K DE +K ++ E
Sbjct: 1442 EAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADE 1501
Query: 225 LKRKKEESERENRGDANVEEPKAGRNWTLDREDSDDEEVPQTGKSETDMDADEEPKPSE 283
K+ E ++ + E KA ++ + ++ + K+E ADE K E
Sbjct: 1502 AKKAAEAKKKADEAKKAEEAKKADEA----KKAEEAKKADEAKKAEEKKKADELKKAEE 1556
|
Length = 2084 |
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 5e-10
Identities = 51/241 (21%), Positives = 98/241 (40%), Gaps = 12/241 (4%)
Query: 9 DREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEK 68
+ + E+ + E+ + E++ ++ ++ + DR R +R D E+ E+
Sbjct: 472 EDRERVEELEA--ELEDLEEEVEEVEERLERAEDLVEAEDRIERL-EERREDLEELIAER 528
Query: 69 RERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRDR 128
RE EK E+ + E E E +RE E + RE +
Sbjct: 529 RETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERI 588
Query: 129 EKRRKVESDDSD-EDKDRDRKRRRRHDDDHKER---VRERSLSRSNRHRDENDESPREKL 184
E ++ + + D + + +R R + E RER + R R+ E ++
Sbjct: 589 ESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARI 648
Query: 185 VEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRV----QEWQELKRKKEESER-ENRGD 239
E DK+ + E++E++ +L EE + + + E +EL+ +E E ENR +
Sbjct: 649 EEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERREALENRVE 708
Query: 240 A 240
A
Sbjct: 709 A 709
|
Length = 880 |
| >gnl|CDD|219953 pfam08648, DUF1777, Protein of unknown function (DUF1777) | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 6e-10
Identities = 38/99 (38%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 47 RDRDRRRDRDRDRDREKEREEKRERAREKEREREKRDREREDRERERERERERRERDRER 106
R R R R R R R + R+ +RER RE+ R RE RDR R R R R R R R R
Sbjct: 3 RSRSRSPRRSRRRGRSRSRD-RRERRRERSRSRE-RDRRRRSRSRSPHRSRRSRSPRRHR 60
Query: 107 EKRERERDRDKEKDRERKSRDREKR-RKVESDDSDEDKD 144
R R R +++ RER RE + R+ + +ED +
Sbjct: 61 S-RSRSPSRRRDRKRERDKDAREPKKRERQKLIKEEDLE 98
|
This is a family of eukaryotic proteins of unknown function. Some of the proteins in this family are putative nucleic acid binding proteins. Length = 158 |
| >gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3 | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 7e-10
Identities = 43/249 (17%), Positives = 93/249 (37%), Gaps = 13/249 (5%)
Query: 23 RSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEKRERAREKEREREKR 82
+ + + +++ KE+EK+K + ++ ++ + +++ KE + R+ E + +R +
Sbjct: 88 PAAKTKPAKEPKNESGKEEEKEKEQVKEEKK---KKKEKPKEEPKDRKPKEEAKEKRPPK 144
Query: 83 DREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRDREKR--------RKV 134
++E+E ++ E E+ RER + + + +K K ++ + V
Sbjct: 145 EKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAV 204
Query: 135 ESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVEDDSDKKEK 194
+ + D + +R++ D + S + + + S D S
Sbjct: 205 KGKPEEPDVNEEREKEEDDGKDRETTTSPMEEDESRQSSEISRRSSSSLKKPDPSPSMAS 264
Query: 195 K-TREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGDANVEEPKAGRNWTL 253
TRE E R R R K + DA K N L
Sbjct: 265 PETRESSKRTETRPRTSLRPPSARPASARPAPPRVKRKEIVTVLQDAQGVG-KIVSNVIL 323
Query: 254 DREDSDDEE 262
+ + S+DE+
Sbjct: 324 EGKKSEDED 332
|
This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (152), Expect = 1e-09
Identities = 52/275 (18%), Positives = 122/275 (44%), Gaps = 1/275 (0%)
Query: 10 REKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEKR 69
R+ E+ + E +R++E + + + + K +D + ++ + +D E+ ++ +
Sbjct: 1188 RKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEE 1247
Query: 70 ERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRDRE 129
ER E+ R+ E+ R + + E R+ D ++ E+++ + +K E+K D
Sbjct: 1248 ERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEA 1307
Query: 130 KRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVEDDS 189
K++ E+ +DE K + + +++ D K+ + + + + E E E
Sbjct: 1308 KKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAE 1367
Query: 190 DKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGDANVEEPKAGR 249
++KK ++ D +K EE +K ++ +E K+K +E ++ +E K +
Sbjct: 1368 AAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKK-K 1426
Query: 250 NWTLDREDSDDEEVPQTGKSETDMDADEEPKPSEN 284
+ D ++ + K++ EE K +E
Sbjct: 1427 AEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEE 1461
|
Length = 2084 |
| >gnl|CDD|233496 TIGR01622, SF-CC1, splicing factor, CC1-like family | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 1e-09
Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 71 RAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRDREK 130
R R++ER R + D R D+ RER R R R R++ R RDRD + R +SR R
Sbjct: 1 RYRDRERGRLRNDTRRSDKGRERSRRRSR-----SRDRSRRRRDRDYYRGRRGRSRSRSP 55
Query: 131 RRKVESDDSDEDKDRDRKRRRRHDDDHKERVRER 164
R + DR+ R + E R+
Sbjct: 56 NRYYRPRGDRSYRRDDRRSGRNTKEPLTEAERDD 89
|
This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed. Length = 457 |
| >gnl|CDD|233496 TIGR01622, SF-CC1, splicing factor, CC1-like family | Back alignment and domain information |
|---|
Score = 61.5 bits (149), Expect = 1e-09
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 39 KEKEKDKHRDRDRRRD--RDRDRDREKEREE-KRERAREKEREREKRDREREDRERERER 95
+++E+ + R+ RR D R+R R R + R+ +R R R+ R R R R R R R
Sbjct: 3 RDRERGRLRNDTRRSDKGRERSRRRSRSRDRSRRRRDRDYYRGRRGRSRSRSPNRYYRPR 62
Query: 96 ERERRERDREREKRER-ERDRDKEKDR 121
RD R R E + E+D
Sbjct: 63 GDRSYRRDDRRSGRNTKEPLTEAERDD 89
|
This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed. Length = 457 |
| >gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 3e-09
Identities = 35/204 (17%), Positives = 64/204 (31%), Gaps = 8/204 (3%)
Query: 39 KEKEKDKHRDRDRRRDRDRDRDREKEREEKRERAREKEREREKRDREREDRERERERERE 98
RR R R+ E+ A + E R E E
Sbjct: 66 AAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAA 125
Query: 99 RRERDREREKRERERDRDKEKDRERKSRDREKRRKVESDDSDEDKDRDRKRRRR---HDD 155
+ RER + R K + + + +D ++ ++ +R RRR +D
Sbjct: 126 QARERRERGEAARRGAARKAGEGGEQPATEAR-----ADAAERTEEEERDERRRRGDRED 180
Query: 156 DHKERVRERSLSRSNRHRDENDESPREKLVEDDSDKKEKKTREEELEDEQRKLDEEMEKR 215
E R R R RD +D R++ + D ++ + + +R+ D +
Sbjct: 181 RQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRDARG 240
Query: 216 RRRVQEWQELKRKKEESERENRGD 239
++ + E RG
Sbjct: 241 DDNREDRGDRDGDDGEGRGGRRGR 264
|
Length = 672 |
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 3e-09
Identities = 39/237 (16%), Positives = 83/237 (35%), Gaps = 16/237 (6%)
Query: 14 KEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEKRE-RA 72
+ RSE + E ++E + RR + D ++ + R+
Sbjct: 661 APRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGE 720
Query: 73 REKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRDREKRR 132
EKE E+ +++ E+ +ER E E + ++E E + E + E E D K
Sbjct: 721 IEKEIEQLEQEEEKL-KERLEELEEDLSSLEQEIENVKSELK-ELEARIEELEEDLHKLE 778
Query: 133 KVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVED----- 187
+ +D + +E V + N + ++ +E
Sbjct: 779 EALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQEL 838
Query: 188 -------DSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENR 237
K + E L ++ +L+EE+E+ +++ + + + ER+
Sbjct: 839 QEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLES-RLGDLKKERDEL 894
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 4e-09
Identities = 54/274 (19%), Positives = 105/274 (38%), Gaps = 12/274 (4%)
Query: 8 RDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREE 67
R +E E+ E+ R+ E S + D + + + + R + KE E
Sbjct: 704 RKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ-----LSKELTE 758
Query: 68 KRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRD 127
E E E+ + E + E E E + E+ +E K RE + R +
Sbjct: 759 LEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDEL---RAELTLL 815
Query: 128 REKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVED 187
E+ + ++ RR D + + + +E +E E E
Sbjct: 816 NEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESEL 875
Query: 188 DSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEES-ERENRGDANVEEPK 246
++ E+ + EE L + +L+E E+ R + EL+R+ EE E+ + + +E +
Sbjct: 876 EALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLE 935
Query: 247 AGRNWTLDR---EDSDDEEVPQTGKSETDMDADE 277
+ +R E S E + +++ + D +E
Sbjct: 936 VRIDNLQERLSEEYSLTLEEAEALENKIEDDEEE 969
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
| >gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 4e-09
Identities = 49/226 (21%), Positives = 94/226 (41%), Gaps = 34/226 (15%)
Query: 11 EKEKEKHREKS-RRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEKR 69
E+ K K R+ +R + ++ RDR+ RRD RD +E E R
Sbjct: 590 EQPAPKAEAKPERQQDRRKP------------RQNNRRDRNERRD-TRDNRTRREGRENR 636
Query: 70 ERAREKEREREKRDREREDRERERERERERRERDREREKR-ERERDRDKEKDRERKSRDR 128
E R R+ +++ E + ++ E+ R + ++++ R ER+R R+ EK R+++
Sbjct: 637 EENRRNRRQAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEK---RQAQQE 693
Query: 129 EKRRKVESDDSDEDKDRDRK-----RRRRHDDDHKERVRERSLSRSNRHRDENDES---- 179
K VE E + +R RR++ + K R+ + + E +
Sbjct: 694 AKALNVEEQSVQETEQEERVQQVQPRRKQRQLNQKVRIEQSVAEEAVAPVVEETVAAEPV 753
Query: 180 ------PREKLVEDDSDK-KEKKTREEELEDEQRKLDEEMEKRRRR 218
PR +LV+ + ++E + + + + M +R RR
Sbjct: 754 VQEVPAPRTELVKVPLPVVAQTAPEQDEENNAENRDNNGMPRRSRR 799
|
Length = 1068 |
| >gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 4e-09
Identities = 42/228 (18%), Positives = 90/228 (39%), Gaps = 28/228 (12%)
Query: 62 EKEREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDR 121
K +E+ +A K ++ R + R++ R+R R+ R+ RE RE R+ ++ R
Sbjct: 586 TKPQEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRDNRTRREGRE-NREENRRNRR 644
Query: 122 ERKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPR 181
+ + + E R +++ +++ + +D +++ + R R DE ++ +
Sbjct: 645 QAQQQTAETRESQQAEVTEKARTQDEQQQAPRRE------------RQRRRNDEKRQAQQ 692
Query: 182 EKLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGDAN 241
E EE+ E + + + + RR Q K + E+S E
Sbjct: 693 EAKAL---------NVEEQSVQETEQEERVQQVQPRRKQRQLNQKVRIEQSVAEEAVAPV 743
Query: 242 VEEPKAGRNWTLDREDSDDEEVPQTGKSETDMDADEEPKPSENQVGDA 289
VEE A + P+T + + + P +++ +A
Sbjct: 744 VEETVA------AEPVVQEVPAPRTELVKVPLPVVAQTAPEQDEENNA 785
|
Length = 1068 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (146), Expect = 5e-09
Identities = 67/376 (17%), Positives = 159/376 (42%), Gaps = 17/376 (4%)
Query: 1 MAHSHRDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRD 60
MA + ++ E+ + E + E E+ ++E K +E + + ++ +
Sbjct: 1578 MALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQ 1637
Query: 61 REKEREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKD 120
+K+ E++++A E ++ E+ + + ++ E ++++ E ++ E+ E++ +K+
Sbjct: 1638 LKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKE 1697
Query: 121 RERKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESP 180
E + E ++K + ++ + + + + ++ E ++ + + +E
Sbjct: 1698 AEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKK 1757
Query: 181 REKLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGDA 240
+ ++ + +KK ++ R+E+ + +LDEE EKRR V + K K N +
Sbjct: 1758 KIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEV----DKKIKDIFDNFANIIEG 1813
Query: 241 NVEEPKAGRNWTLDREDSDDEEVPQTGKSE-TDMDADEEPKPSENQVGDAMLVDSDGGSA 299
+E N + + EDS +EV + + + DA E+ K ++N + A
Sbjct: 1814 G-KEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENG----EDGNKEA 1868
Query: 300 APALQIGAAEDEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMDRKGDRRSN 359
+ ED++ + +A EK+ NN+ K D D+
Sbjct: 1869 DFNKEKDLKEDDEEEIEEADEI-------EKIDKDDIEREIPNNNMAGKNNDIIDDKLDK 1921
Query: 360 GEQPKKSSNKSLGRII 375
E K+ + ++ II
Sbjct: 1922 DEYIKRDAEETREEII 1937
|
Length = 2084 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (145), Expect = 6e-09
Identities = 51/277 (18%), Positives = 120/277 (43%), Gaps = 6/277 (2%)
Query: 10 REKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEKR 69
R+ E + E +R++E E+ + D +K + + + ++D + + E+ER +
Sbjct: 1194 RKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEE 1253
Query: 70 ERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRDRE 129
R E+ R R+ + E + E ++ + +++ E ++ +K+K E K + E
Sbjct: 1254 IRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEE 1313
Query: 130 KRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVEDDS 189
+K + ++ + + + + ++ E + + + DE + + EK +
Sbjct: 1314 A-KKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAA-EEKAEAAEK 1371
Query: 190 DKKEKKTREEELE---DEQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGDANVEEPK 246
K+E K + + + +E++K DE +K ++ ELK+ ++ + EE K
Sbjct: 1372 KKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKK 1431
Query: 247 AGRNWTLDREDSDDEEVPQTGKSETDMDADEEPKPSE 283
E++ + + K+E A+E K +E
Sbjct: 1432 KADEAKKKAEEAKKADEAKK-KAEEAKKAEEAKKKAE 1467
|
Length = 2084 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 6e-09
Identities = 54/271 (19%), Positives = 125/271 (46%), Gaps = 15/271 (5%)
Query: 7 DRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRR------RDRDRDRD 60
+ + + EK + KS ++E D E+ + +E ++ + +R + ++ +
Sbjct: 678 ELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQS 737
Query: 61 REKEREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKD 120
R +E EE+ E E+ E ++R E E+ E + + + E + +R+ +++ ++
Sbjct: 738 RLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEE 797
Query: 121 RERKSRDREKR-RKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDES 179
E + + E+R +E + ++ R+R + + + + E L +E ++
Sbjct: 798 LEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKE 857
Query: 180 PREKLVEDDSDKKEKKTREEEL---EDEQRKLDEEMEKRRRRV----QEWQELKRKKEES 232
E E + + EK+ E+EL E+E+ +L+EE+ + + +E ++L+ + EE
Sbjct: 858 LEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEEL 917
Query: 233 ERENRGDANVEEPKAGRNWTLDREDSDDEEV 263
E + VE P+ + ED+ + E+
Sbjct: 918 EAKLE-RLEVELPELEEELEEEYEDTLETEL 947
|
Length = 1163 |
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 9e-09
Identities = 52/234 (22%), Positives = 101/234 (43%), Gaps = 7/234 (2%)
Query: 7 DRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKERE 66
DR +EK E+ E ER ++K + + + R++ R RE E
Sbjct: 169 DRKKEKALEELEEVEENIERLDLII--DEKRQQLERLRREREKAERYQALLKEKREYEGY 226
Query: 67 EKRERAREKEREREKRDREREDRERERE-RERERRERDREREKRERERD----RDKEKDR 121
E + ER++E +R+ E E E E E ++ E+ E+ + + K+
Sbjct: 227 ELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGE 286
Query: 122 ERKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPR 181
E + R +EK ++E++ + ++ K R D + + E + + +E +
Sbjct: 287 EEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIE 346
Query: 182 EKLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERE 235
E+ D +E +EELED + +L+E ++ E ++ + K E+ +RE
Sbjct: 347 EERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKRE 400
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164 |
| >gnl|CDD|219953 pfam08648, DUF1777, Protein of unknown function (DUF1777) | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 1e-08
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 61 REKEREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKD 120
R + R +R R R + R R++R+R RE R R RER+R RR R R + R R + +
Sbjct: 3 RSRSRSPRRSRRRGRSRSRDRRERRRE-RSRSRERDRRRRSRSRSPHRSRRSRSPRRHRS 61
Query: 121 RERKSRDREKRRKVESDDSDEDKDRDRK 148
R R R R++ D+ E K R+R+
Sbjct: 62 RSRSPSRRRDRKRERDKDAREPKKRERQ 89
|
This is a family of eukaryotic proteins of unknown function. Some of the proteins in this family are putative nucleic acid binding proteins. Length = 158 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (141), Expect = 2e-08
Identities = 50/284 (17%), Positives = 120/284 (42%), Gaps = 3/284 (1%)
Query: 6 RDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKER 65
R + +E E+++++E ++ ++ + + K+K +D + + R+ D + E +
Sbjct: 1088 RADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARK 1147
Query: 66 EEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKS 125
E +R + + R + E R+ E ++ E + E K E R + + E
Sbjct: 1148 AEDAKRVEIARKAEDAR-KAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAAR 1206
Query: 126 RDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLV 185
+ E+R+ E+ +++ K + ++ E ++ R+N + +E+
Sbjct: 1207 KAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFA 1266
Query: 186 EDDSD-KKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGDANVEE 244
+ K E+ + +EL+ + K + K+ ++ E K+K EE+++ + EE
Sbjct: 1267 RRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEE 1326
Query: 245 PKAGRNWTLDREDSDDEEVPQTGKSETDMDADEEPKPSENQVGD 288
K + ++ + ++ + K+E + ADE E
Sbjct: 1327 AKKKAD-AAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAA 1369
|
Length = 2084 |
| >gnl|CDD|233496 TIGR01622, SF-CC1, splicing factor, CC1-like family | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 2e-08
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Query: 6 RDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKER 65
RDR+R + + R + ER + D+ + +++D +R R R R R R +R
Sbjct: 3 RDRERGRLRNDTRRSDKGRERSRRRSRSRDRSRRRRDRDYYRGR-RGRSRSRSPNRYYRP 61
Query: 66 EEKRERAREKEREREKRDREREDRERER 93
R R+ R + ER+
Sbjct: 62 RGDRSYRRDDRRSGRNTKEPLTEAERDD 89
|
This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed. Length = 457 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 2e-08
Identities = 46/282 (16%), Positives = 114/282 (40%), Gaps = 2/282 (0%)
Query: 10 REKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEKR 69
E EK+ + + + + E+ + + + E + ++ R++ + + EE+
Sbjct: 196 EELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEEL 255
Query: 70 ERAREKEREREKR-DREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRDR 128
E +E+ E EK + + + E RE E +E E ++ E + + RER
Sbjct: 256 EELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELE 315
Query: 129 EKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVEDD 188
+ ++E + + + + + + E+ L+ ++E +E L E +
Sbjct: 316 NELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELE 375
Query: 189 SDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGDANVEEPKAG 248
+ + ELE E ++ E+E+ +R ++ +E + E + + + E +
Sbjct: 376 ELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELE 435
Query: 249 RNWTLDREDSDDEEVPQTGKSETDMDADEEPKPSENQVGDAM 290
T + E+ ++E + E D +E + ++ + +
Sbjct: 436 ELQT-ELEELNEELEELEEQLEELRDRLKELERELAELQEEL 476
|
Length = 1163 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 2e-08
Identities = 50/219 (22%), Positives = 95/219 (43%), Gaps = 3/219 (1%)
Query: 17 HREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEKRERAREKE 76
R K +++ E++ + + + + + + + ++ R E EE R + E E
Sbjct: 656 SRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELE 715
Query: 77 REREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRDREKRRKVES 136
R+ E+ RE E E E+ + R E E E+ E + + E+ +ER E+ +E
Sbjct: 716 RQLEELKRELAALEEELEQLQSRLE---ELEEELEELEEELEELQERLEELEEELESLEE 772
Query: 137 DDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVEDDSDKKEKKT 196
+ ++ + +R + E L + R D + + ++E +
Sbjct: 773 ALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEE 832
Query: 197 REEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERE 235
EEE+E+ + KLDE E+ +E +ELK + EE E E
Sbjct: 833 LEEEIEELEEKLDELEEELEELEKELEELKEELEELEAE 871
|
Length = 1163 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 2e-08
Identities = 54/237 (22%), Positives = 120/237 (50%), Gaps = 11/237 (4%)
Query: 5 HRDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKE 64
+ R + +EKE+ R E E +E+E+++ R +RR R +++ +E
Sbjct: 28 EKKRIKAEEKEEERRIDEMMEEE-----RLKALAEEEERERKRKEERREGRAVLQEQIEE 82
Query: 65 REEKRERARE-KEREREKRDR-----EREDRERERERERERRERDREREKRERERDRDKE 118
RE++R+ E + +ERE+ D + ED +E+ ++++ E ++ ER KE
Sbjct: 83 REKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKREKQKKLREEIDEFNEERIERKE 142
Query: 119 KDRERKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDE 178
+++ER+ + K + + + ++ +++R+ +RR R ++ +E R R+ E +
Sbjct: 143 EEKEREREEELKILEYQREKAEREEEREAERRERKEEKEREVARLRAQQEEAEDEREELD 202
Query: 179 SPREKLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERE 235
R L +++ ++KE++ +EE E +R+ E R +++E +E +++ E
Sbjct: 203 ELRADLYQEEYERKERQKEKEEAEKRRRQKQELQRAREEQIEEKEERLQEERAEEEA 259
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|130456 TIGR01389, recQ, ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 2e-08
Identities = 78/373 (20%), Positives = 143/373 (38%), Gaps = 54/373 (14%)
Query: 487 YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546
Y+ P Q + + ++ GRD + V TG GK+L + +P L + +++
Sbjct: 11 YDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL-----------KGLTVVI 59
Query: 547 APTREL----VQQIHSDIRKFAKVMGVRCVPVYGGSGV-AQQISELKRGTEIVVCTPGRM 601
+P L V Q+ GV Y S + A++ ++++ G
Sbjct: 60 SPLISLMKDQVDQLR--------AAGVAAA--YLNSTLSAKEQQDIEKA-----LVNGE- 103
Query: 602 IDILCTSGGKITN------LRRVT--YLVMDEADRMFDMG--FEPQITRIVQ--NIRPDR 649
+ +L + ++ L+R+ + +DEA + G F P+ R+ P
Sbjct: 104 LKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQV 163
Query: 650 QTVLFSATFPRQV--EILARKVLNKPVEIQVGGRSVVNKDITQLV-EVRPESDRFLRLLE 706
+ +AT + +I L E + + D L V ++++ LL+
Sbjct: 164 PRIALTATADAETRQDIRELLRLADANEF------ITSFDRPNLRFSVVKKNNKQKFLLD 217
Query: 707 LLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCN 766
L + + I I+ S++K + L L G L+ H R DF +
Sbjct: 218 YLKKHRGQSGI-IYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVK 276
Query: 767 LLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYS 826
+++AT+ G+D + VI++D P + E Y GR GR G AI S D
Sbjct: 277 VMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALL 336
Query: 827 PDLVKALELSEQV 839
++ E +
Sbjct: 337 KRRIEQSEADDDY 349
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ [DNA metabolism, DNA replication, recombination, and repair]. Length = 591 |
| >gnl|CDD|219953 pfam08648, DUF1777, Protein of unknown function (DUF1777) | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 3e-08
Identities = 41/123 (33%), Positives = 57/123 (46%), Gaps = 23/123 (18%)
Query: 6 RDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDR-EKE 64
R R R + + R +SR +R R+R R R R R+RDR +
Sbjct: 3 RSRSRSPRRSRRRGRSRSRDR--------------------RERRRERSRSRERDRRRRS 42
Query: 65 REEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERK 124
R R+R R R R R R R+R+RER + RE +KRER++ KE+D E K
Sbjct: 43 RSRSPHRSRRSRSPRRHRSRSR-SPSRRRDRKRERDKDAREPKKRERQKL-IKEEDLEGK 100
Query: 125 SRD 127
S +
Sbjct: 101 SDE 103
|
This is a family of eukaryotic proteins of unknown function. Some of the proteins in this family are putative nucleic acid binding proteins. Length = 158 |
| >gnl|CDD|219953 pfam08648, DUF1777, Protein of unknown function (DUF1777) | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 3e-08
Identities = 35/105 (33%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Query: 75 KEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRDREKRRKV 134
+ R R R R R R R+R RRER R RE+ R R R + R R+SR + R
Sbjct: 3 RSRSRSPRRSRRRGRSRSRDRRERRRERSRSRERDRRRRSRSRSPHRSRRSRSPRRHR-- 60
Query: 135 ESDDSDEDKDRDRKRRRRHDDDH-KERVRERSLSRSNRHRDENDE 178
S + RDRKR R D K+R R++ + + ++E
Sbjct: 61 -SRSRSPSRRRDRKRERDKDAREPKKRERQKLIKEEDLEGKSDEE 104
|
This is a family of eukaryotic proteins of unknown function. Some of the proteins in this family are putative nucleic acid binding proteins. Length = 158 |
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 3e-08
Identities = 51/283 (18%), Positives = 103/283 (36%), Gaps = 18/283 (6%)
Query: 6 RDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDR-DRDRDREKE 64
R+R ++E +S E D + K + ++ ++ +++ ++ KE
Sbjct: 680 RERLEGLKRELSSLQSELRRIENRLDELSQELSDASRK--IGEIEKEIEQLEQEEEKLKE 737
Query: 65 R-EEKRERAREKEREREKRDREREDRERERERERERRERDRERE---KRERERDRDKEKD 120
R EE E E+E E E ++ E E E + E + R E
Sbjct: 738 RLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQ 797
Query: 121 RERKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESP 180
E + E R E K + + + + ++E+ E +S
Sbjct: 798 AELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQ-----RIDLKEQIKSI 852
Query: 181 REKLVEDDSDKKEKKTREEELEDEQRKLDEEM----EKRRRRVQEWQELKRKKEESERE- 235
+++ + K+E + EELE R L+ + ++R + +EL+RK EE E +
Sbjct: 853 EKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQI 912
Query: 236 NRGDANVEEPKAGRNWTLDREDSDDEEVPQTGKSETDMDADEE 278
+ + E KA + ++ + + + + E
Sbjct: 913 EKKRKRLSELKAKLEALEEELSEIEDPKGE-DEEIPEEELSLE 954
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164 |
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
Score = 57.7 bits (139), Expect = 3e-08
Identities = 48/285 (16%), Positives = 109/285 (38%), Gaps = 10/285 (3%)
Query: 1 MAHSHRDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRD 60
A S R +++ +K E++ + K + K K ++ +
Sbjct: 163 AAGSREKRKKKERLKKLIEETENLAELIIDLEEL-KLQELKLK------EQAKKALEYYQ 215
Query: 61 REKEREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKD 120
+++ E + E + + +R +E R+ + E +E EK E + +++
Sbjct: 216 LKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKEN 275
Query: 121 RERKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESP 180
+E + + + +++ +E++ + + E + S + E +
Sbjct: 276 KEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKE- 334
Query: 181 REKLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGDA 240
+E++ E + + KE + + E E+E+ +L++ EK + +E L +KK ESER +
Sbjct: 335 KEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEE--LLAKKKLESERLSSAAK 392
Query: 241 NVEEPKAGRNWTLDREDSDDEEVPQTGKSETDMDADEEPKPSENQ 285
EE +N E Q + +E E +
Sbjct: 393 LKEEELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEELE 437
|
This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162 |
| >gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 4e-08
Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 16/116 (13%)
Query: 4 SHRDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREK 63
S R R R +++ + R++ RRS RE+S D R R R R R
Sbjct: 21 SERPRRRSRDRSRFRDRHRRS-RERSYRED--------------SRPRDRRRYDSRSPRS 65
Query: 64 EREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEK 119
R R+R++ R R R ++ R R R+R + R+ +K+ D
Sbjct: 66 LRYSSVRRSRDRPRRRS-RSVRSIEQHRRRLRDRSPSNQWRKDDKKRSLWDIKPPG 120
|
These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi. Length = 509 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 5e-08
Identities = 66/228 (28%), Positives = 128/228 (56%), Gaps = 8/228 (3%)
Query: 6 RDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKER 65
+ + RE+ E + E+ R E E+ + +E+ E +++K + R R+R EKER
Sbjct: 123 QKKLREEIDEFNEERIERKEEEKEREREEELKILEYQREKAEREEEREAERRERKEEKER 182
Query: 66 EEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKS 125
E R RA+++E E E+ + + E R + E ER+ER +E+E+ E+ R + +E R R+
Sbjct: 183 EVARLRAQQEEAEDEREELD-ELRADLYQEEYERKERQKEKEEAEKRRRQKQELQRAREE 241
Query: 126 RDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVR-ERSLSRSNRHRDENDESPREKL 184
+ EK +++ + ++E+ +R+R ++ +D+ E+ E+ + HR E E+
Sbjct: 242 QIEEKEERLQEERAEEEAERERMLEKQAEDEELEQENAEKRRMKRLEHRRE-----LEQQ 296
Query: 185 VEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEES 232
+E+ +++ + REEELE+ +R +EE E++ R +E Q L ++ E+
Sbjct: 297 IEEKEERRAAE-REEELEEGERLREEEAERQARIEEERQRLLKEHAEA 343
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|219953 pfam08648, DUF1777, Protein of unknown function (DUF1777) | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 5e-08
Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 3/104 (2%)
Query: 38 DKEKEKDKHRDRDRRRDRDRDRDREKEREEKRERAREKEREREKRDREREDRERERERER 97
+ + + R R R RDR R+R RE+ R +R+R R R R R R R R
Sbjct: 6 SRSPRRSRRRGRSRSRDR-RERRRERSRSRERDRRRRSRSRSPHRSRRSRSPRRHRSRSR 64
Query: 98 ERRERDREREKRERERDRDKEKDRERKSRDREKRRKVESDDSDE 141
R R+R KRER++D + K RER+ +E+ + +SD+ E
Sbjct: 65 S-PSRRRDR-KRERDKDAREPKKRERQKLIKEEDLEGKSDEEVE 106
|
This is a family of eukaryotic proteins of unknown function. Some of the proteins in this family are putative nucleic acid binding proteins. Length = 158 |
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 5e-08
Identities = 45/184 (24%), Positives = 84/184 (45%), Gaps = 5/184 (2%)
Query: 56 DRDRDREKEREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDR 115
+ +++EKE EE E E + E E E+E + E +E E EK +
Sbjct: 193 ELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEG 252
Query: 116 DKEKDRERKSRDREKRRKVESDDSD-EDKDRDRKRRRRHDDDHKE--RVRERSLSRSNR- 171
K K E+ E+ +++ + + E+K ++ K + +++ + E L
Sbjct: 253 SKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREI 312
Query: 172 -HRDENDESPREKLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKE 230
R E + E + +EK+ R EEL+ + ++L++ +E+ R + ++E K KKE
Sbjct: 313 EKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKE 372
Query: 231 ESER 234
E ER
Sbjct: 373 ELER 376
|
Length = 880 |
| >gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | Back alignment and domain information |
|---|
Score = 56.9 bits (137), Expect = 5e-08
Identities = 48/228 (21%), Positives = 95/228 (41%), Gaps = 9/228 (3%)
Query: 11 EKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEKRE 70
E E E R+ E+E + + + D + E + + E E E E
Sbjct: 678 ENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEE 737
Query: 71 -RAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRDRE 129
E E E E + + E +R+ E + E ++ E E + +D E K +
Sbjct: 738 GEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGA 797
Query: 130 KRR---KVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVE 186
+ + + E++ ++D+ + + D + K+ E+ L+ N+ + DE +
Sbjct: 798 EGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGG 857
Query: 187 DD-----SDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKK 229
D +++E++ EEE E+E+ + +EE E EW E ++K+
Sbjct: 858 SDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLEWPETRQKQ 905
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 7e-08
Identities = 57/216 (26%), Positives = 102/216 (47%), Gaps = 30/216 (13%)
Query: 33 DEDKHDKEKEKDKHRDRDRRRDRD--RDRDREKEREEKRERAREKEREREKRDREREDRE 90
D +K++ K + ++ +RR D +R + EE+RER R++ER + + + E
Sbjct: 23 DAQIEEKKRIKAEEKEEERRIDEMMEEERLKALAEEEERERKRKEERREGRAVLQEQIEE 82
Query: 91 RERERERERRERDREREKRERERDRDKEKDRERKSRDREKRRKV--ESDDSDEDKDRDRK 148
RE+ R+ E ER +ERE+ + +R +E+D REK++K+ E D+ +E++ ++
Sbjct: 83 REKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKREKQKKLREEIDEFNEERIERKE 142
Query: 149 RRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVEDDSDKKEKKTREEELEDEQRKL 208
+ + + + ++ E +EK REEE E E+R+
Sbjct: 143 EEKEREREEELKILEYQ--------------------------REKAEREEEREAERRER 176
Query: 209 DEEMEKRRRRVQEWQELKRKKEESERENRGDANVEE 244
EE E+ R++ QE + E E R D EE
Sbjct: 177 KEEKEREVARLRAQQEEAEDEREELDELRADLYQEE 212
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|202096 pfam02029, Caldesmon, Caldesmon | Back alignment and domain information |
|---|
Score = 55.4 bits (133), Expect = 9e-08
Identities = 57/283 (20%), Positives = 112/283 (39%), Gaps = 25/283 (8%)
Query: 9 DREKEKEKHREKSRRSEREQSTDSDED------------KHDKEKEKDKHRDRDRRRDRD 56
D E+E + R + R E+ + + ++ E+ K D +
Sbjct: 2 DDEEEAARERRRREREEQLRQKQEEGSLGQVTTQVEVNSQNSVPDEESKTSTDDEAALLE 61
Query: 57 RDRDREKEREEKRERAREKEREREKRDRE---REDRERERERERERRERDREREKRERER 113
R RE+ R+E+ A E+++E + + E R +E E E EK E
Sbjct: 62 RLARREERRDERFSEALERQKEFKPTSTDQSLSEPSRRMQEDSGAENETVEEEEKEESRE 121
Query: 114 DRDKEKDRERKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERS----LSRS 169
+R++ ++ E ++ +K E+ ++ K +++ +R
Sbjct: 122 EREEVEETEGVTKSEQK----NDWRDAEECQKEEKEPEPEEEEKPKRGSLEENNGEFMTH 177
Query: 170 NRHRDENDESPREKLVEDDSDKKEKKTREEELEDEQRKLDEEMEKR--RRRVQEWQELKR 227
EN S KE + +++ ++ +L+E +KR RR+V E +E +R
Sbjct: 178 KLKHTENTFSRGGAEGAQVEAGKEFEKLKQKQQEAALELEELKKKREERRKVLEEEEQRR 237
Query: 228 KKEESERENRGDANVEEPKAGRNWTLDREDSDDEEVPQTGKSE 270
K+EE++R++R + K ++VP+ G SE
Sbjct: 238 KQEEADRKSREEEEKRRLKEEIERRRAEAAEKRQKVPEDGLSE 280
|
Length = 431 |
| >gnl|CDD|233496 TIGR01622, SF-CC1, splicing factor, CC1-like family | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 1e-07
Identities = 35/119 (29%), Positives = 49/119 (41%), Gaps = 33/119 (27%)
Query: 89 RERERERERERRERDREREK-RERERDRDKEKDRERKSRDREKRRKVESDDSDEDKDRDR 147
R R+RER R R R +K RER R R + +DR R+ RDR D R R
Sbjct: 1 RYRDRERGRL-RNDTRRSDKGRERSRRRSRSRDRSRRRRDR-------------DYYRGR 46
Query: 148 KRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVEDDSDKKEKKTREEELEDEQR 206
+ R RS S + +R D S R D++ + +E L + +R
Sbjct: 47 RG------------RSRSRSPNRYYRPRGDRSYR------RDDRRSGRNTKEPLTEAER 87
|
This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed. Length = 457 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 1e-07
Identities = 50/258 (19%), Positives = 111/258 (43%), Gaps = 29/258 (11%)
Query: 6 RDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKER 65
++R E E+E + ++ ++ + E+K +E+ + + + R E+E
Sbjct: 757 QERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALEREL 816
Query: 66 EEKRERAREKEREREKRDRERED------------RERERERERERRERDREREKRERER 113
E +R E+E E+ + E E+ E E+E E + E + ++E
Sbjct: 817 ESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELE 876
Query: 114 DRDKEKDRERKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHR 173
D KE + E++ + E R++ES+ ++ ++ ++ R R + + K E L
Sbjct: 877 DELKELEEEKEELEEEL-RELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEEL 935
Query: 174 DENDESPREKLVEDDSDKKEKKTR----------------EEELEDEQRKLDEEMEKRRR 217
+E E E +E + ++ E++ EE E+ + + ++ E + +
Sbjct: 936 EEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEK 995
Query: 218 RVQEWQELKRKKEESERE 235
++ +EL ++K E +E
Sbjct: 996 LLEVIEELDKEKRERFKE 1013
|
Length = 1163 |
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 1e-07
Identities = 46/177 (25%), Positives = 71/177 (40%), Gaps = 5/177 (2%)
Query: 66 EEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKS 125
EE RER E E E E + E E+ E ER + E + E+ E R+ +E ER+
Sbjct: 471 EEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRE 530
Query: 126 RDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRS---NRHRDENDESPR- 181
EKR + E + +R E E + N E E
Sbjct: 531 TIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIES 590
Query: 182 -EKLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENR 237
E++ + + + E L +++ L E ++RR R+ E +E KR+ E E R
Sbjct: 591 LERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEAR 647
|
Length = 880 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 1e-07
Identities = 42/247 (17%), Positives = 104/247 (42%), Gaps = 13/247 (5%)
Query: 7 DRDREKEKEKHREKSRRSEREQSTDS----DEDKHDKEKEKDKHRDRDRRRDRDRDRDRE 62
+ E+ + E R E E+ +E+ + + ++ ++ + + E
Sbjct: 484 EELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLE 543
Query: 63 KEREEKR----ERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKE 118
+ E K ++ +E+ R+ E R +E ++ E R R+E E +R +E + +
Sbjct: 544 ELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLK 603
Query: 119 KDRERKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDEND- 177
+ ER S+ E + +E +++ + + + E++ ++ +
Sbjct: 604 ELEERLSQLEELLQSLELSEAENELEEAEEELE----SELEKLNLQAELEELLQAALEEL 659
Query: 178 ESPREKLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENR 237
E E+L + + ++ EE+LE++ +L++ E+ + +E +EL +K E E+
Sbjct: 660 EEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIE 719
Query: 238 GDANVEE 244
+ +
Sbjct: 720 ELESRKA 726
|
Length = 908 |
| >gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 2e-07
Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 14/120 (11%)
Query: 115 RDKEKDRER-KSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHR 173
RD+E DRER KSR R++ D ++ R R R R D R RERS +R R
Sbjct: 1 RDEEPDREREKSRGRDR-------DRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPR 53
Query: 174 DENDESPREKLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRR----VQEWQELKRKK 229
D R +++R+ + E +RR R +W++ +K+
Sbjct: 54 DRRRYDSRS--PRSLRYSSVRRSRDRPRRRSRSVRSIEQHRRRLRDRSPSNQWRKDDKKR 111
|
These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi. Length = 509 |
| >gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3 | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 2e-07
Identities = 52/303 (17%), Positives = 119/303 (39%), Gaps = 24/303 (7%)
Query: 24 SEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKE-REEKRERAREKEREREKR 82
+E + S+D + +K K ++ + +E+E +E+ + ++K++E+ K
Sbjct: 67 AESKLSSDEAVKRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKE 126
Query: 83 DREREDRERERERERERRERDREREKRERERDRDKEKDRER---------KSRDREKRRK 133
+ + + E + +R +E+++E+EK+ E RD+E++++R K ++K
Sbjct: 127 EPKDRKPKEEAKEKRPPKEKEKEKEKK-VEEPRDREEEKKRERVRAKSRPKKPPKKKPPN 185
Query: 134 VESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDEND-ESPREKLVEDDSDKK 192
+ + +E+K R R K + + R D D E+ + ED+S +
Sbjct: 186 KKKEPPEEEKQRQAAREA---VKGKPEEPDVNEEREKEEDDGKDRETTTSPMEEDESRQS 242
Query: 193 EKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGDANVEEPKAGRNWT 252
+ +R ++ M R + R + + P + R
Sbjct: 243 SEISRRSSSSLKKPDPSPSMASPETRESSKRTETRPRTSLRPPSAR------PASARPAP 296
Query: 253 LDREDSDDEEVPQTGK--SETDMDADEEPKPSENQVGDAMLVDSDGGSAAPALQIGA-AE 309
+ + V Q + + + E K SE++ + +V++ + AE
Sbjct: 297 PRVKRKEIVTVLQDAQGVGKIVSNVILEGKKSEDEDDENFVVEAAAQAPDIVAGGEDEAE 356
Query: 310 DED 312
D +
Sbjct: 357 DGE 359
|
This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 2e-07
Identities = 51/245 (20%), Positives = 92/245 (37%), Gaps = 11/245 (4%)
Query: 6 RDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKER 65
++ KE + E+ E D ++ E+E + + + ++ + + E+E
Sbjct: 175 LLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEI 234
Query: 66 EEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKS 125
E ER E E E+E+ + + E E + RE+ RE +R E+ E+
Sbjct: 235 EALEERLAELEEEKERLEELKARLLEIESLELEALKI---REEELRELERLLEELEEKIE 291
Query: 126 RDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSN------RHRDENDES 179
R E R++E + + + R + + + ER +E E
Sbjct: 292 RLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEE 351
Query: 180 PREKLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGD 239
E + KE + R EELE E K E +++ +QE + E S
Sbjct: 352 KNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQEL--KEELAELSAALEEIQ 409
Query: 240 ANVEE 244
+EE
Sbjct: 410 EELEE 414
|
Length = 908 |
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 3e-07
Identities = 40/222 (18%), Positives = 87/222 (39%), Gaps = 17/222 (7%)
Query: 3 HSHRDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDRE 62
+ EK RE ER +++ DK E E+ + + R+ RD+ +
Sbjct: 300 EAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEY 359
Query: 63 KEREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRE 122
E +E+ E R + E +K E D ++ + E + RE + +RE DR +E+ +
Sbjct: 360 AELKEELEDLRAELEEVDKEFAETRDELKDYREKLE--KLKREINELKRELDRLQEELQR 417
Query: 123 RKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPRE 182
+ + ++ ++ + K +D +++ ++ E
Sbjct: 418 LSEELADLNAAIAGIEAKINELEEEK------EDKALEIKK---------QEWKLEQLAA 462
Query: 183 KLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQE 224
L + + + + K + +E E KL E+ + + + +E
Sbjct: 463 DLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEE 504
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164 |
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 3e-07
Identities = 38/248 (15%), Positives = 99/248 (39%), Gaps = 8/248 (3%)
Query: 13 EKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEKRERA 72
E+ + + ++ +S + + +KE+E ++ + + + +E+E + +
Sbjct: 237 EERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEE 296
Query: 73 REKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRDREKRR 132
E + E K +R + D E + + + ++ + K+E+E + EK+ + RE
Sbjct: 297 EELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEE 356
Query: 133 KVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVEDDSDKK 192
+ E ++ + K + ++ ++ E S E + + + ++
Sbjct: 357 EEE----EQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKNEEEKEAKLLL 412
Query: 193 EKKTREE----ELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGDANVEEPKAG 248
E +EE E + E+ K+ EE+E+ Q ++++ E + +E K+
Sbjct: 413 ELSEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKEELEKQALKLLKDKLELKKSE 472
Query: 249 RNWTLDRE 256
+
Sbjct: 473 DLLKETKL 480
|
This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162 |
| >gnl|CDD|224124 COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 3e-07
Identities = 78/387 (20%), Positives = 151/387 (39%), Gaps = 38/387 (9%)
Query: 480 ETIRKLNYEKPMPIQAQALPVIMSG--RDCIGV--AKTGSGKTLAFVLPMLRHIKDQPPV 535
+ + +Q +AL +I+ R + V A TG GKT A ++ L + ++
Sbjct: 186 NKFKSFIEHEGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK--- 242
Query: 536 AAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVV 595
+ + P R +++ ++ ++ + V S + E + + +
Sbjct: 243 -IKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSVI-GKSLHSSSKEPLLLEPDQDILLTL 300
Query: 596 CTPGRMIDILC--------------TSGGKITNLRRVTY--LVMDEADRMFDMGFEPQIT 639
T +L G K L + +++DE D +
Sbjct: 301 TTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADETMLAALL 360
Query: 640 RIVQNIRPDRQTVLF-SATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPES 698
+++ + VL SAT P ++ +K L K E+ + +D L
Sbjct: 361 ALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVD 420
Query: 699 D---RFLRLLELLGEWYEKG-KILIFVHSQEKCDALFRDLLKHGYPCLSLHG---AKDQT 751
L+EL+ E ++G K+L+ V++ ++ L+ L + G L LH KD+
Sbjct: 421 VEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDRE 480
Query: 752 DRESTISD-FKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGR 810
++E + FK N +++AT V G+D+ + +++I AP + R GR R G+
Sbjct: 481 EKERELKKLFKQNEGFIVVATQVIEAGVDI-DFDVLITELAPID--SLIQRAGRVNRHGK 537
Query: 811 KGCAITFISEEDAKYSPDLVKALELSE 837
K ++ D + P L + E E
Sbjct: 538 KENGKIYV-YNDEERGPYLKYSYEKLE 563
|
Length = 733 |
| >gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 5e-07
Identities = 80/359 (22%), Positives = 131/359 (36%), Gaps = 64/359 (17%)
Query: 494 QAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553
Q AL +I GR+ + TGSGKT +F+LP+L H+ + P A L++ PT L
Sbjct: 75 QVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLL-RDPSA-----RALLLYPTNALA 128
Query: 554 QQIHSDIRKFAKVMGVRCVP-VYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKI 612
+R+ + + Y G ++ + R ++ T M+ L
Sbjct: 129 NDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNH-- 186
Query: 613 TN----LRRVTYLVMDEA---------------DRMFDM-GFEPQITRIVQNIRPDRQTV 652
LR + YLV+DE R+ Q +
Sbjct: 187 DAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLRRYGS----------PLQII 236
Query: 653 LFSATFPRQVEILARKVLNKPVEIQV-------GGRSVV--NKDITQLVE-VRPESDRFL 702
SAT E A ++ + E+ V G R V I +L E +R + L
Sbjct: 237 CTSATLANPGE-FAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSALAEL 295
Query: 703 RLL--ELLGEWYEKGKILIFVHSQEK--------CDALFRDLLKHGYPCLSLHGAKDQTD 752
L L+ + L+F S+++ L R+ K + + +
Sbjct: 296 ATLAALLVRNGI---QTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREE 352
Query: 753 RESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNH-YEDYVHRVGRTGRAGR 810
R ++FK +IAT+ G+D+ L+ VI + P + R GR GR G+
Sbjct: 353 RRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQ 411
|
Length = 851 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 7e-07
Identities = 45/233 (19%), Positives = 88/233 (37%), Gaps = 19/233 (8%)
Query: 10 REKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRD-RDRRRDRDRDRDREKEREEK 68
R +E E+ EK E E + EK + R + + +E E +
Sbjct: 675 RRREIEELEEKIEELE--------EKIAELEKALAELRKELEELEEELEQLRKELEELSR 726
Query: 69 RERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRDR 128
+ A K+ R + + E+ ER + +E E + E E+ E E+ E +
Sbjct: 727 QISALRKDLARLEAEVEQL-EERIAQLSKELTELEAEIEELEERL----EEAEEELAEAE 781
Query: 129 EKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDE----SPREKL 184
+ ++E ++ K+ + R D+ E + + R R E+ E + +L
Sbjct: 782 AEIEELE-AQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRL 840
Query: 185 VEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENR 237
+ + +E E L E +L+E +E+ ++ + EE+ R
Sbjct: 841 EDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLR 893
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 7e-07
Identities = 46/246 (18%), Positives = 100/246 (40%), Gaps = 17/246 (6%)
Query: 8 RDREKEKEKHREKS---RRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKE 64
++ EKE+E + + E+E+ +E K ++E++ + + R D + + +
Sbjct: 259 QELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLK 318
Query: 65 REEKRERAREKEREREKRDREREDRE-------RERERERERRERDREREKRERERDRDK 117
EK + EKE ++EK + E ++E RE E E E + + + + E +
Sbjct: 319 ESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLA 378
Query: 118 EKDRERKSRDREKRRKVE-----SDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRH 172
+K E + + K E +++ E K + D +E+ E +
Sbjct: 379 KKKLESERLSSAAKLKEEELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEELEE 438
Query: 173 RDENDESP--REKLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKE 230
E + EK + K K + E + E + ++ K +++ ++ +E
Sbjct: 439 SLETKQGKLTEEKEELEKQALKLLKDKLELKKSEDLLKETKLVKLLEQLELLLLRQKLEE 498
Query: 231 ESEREN 236
S++E+
Sbjct: 499 ASQKES 504
|
This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162 |
| >gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis) | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 7e-07
Identities = 25/147 (17%), Positives = 61/147 (41%), Gaps = 7/147 (4%)
Query: 9 DREKEKEKHREKSRRSEREQ---STDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKER 65
++E + EK R++ R E ++ + + + D D + D + E
Sbjct: 204 EKEVKAEKKRQELERVEEKKLEKMAPEASRLDEMSEGLLEESDDDGEEESDDESAWEGFE 263
Query: 66 EEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKS 125
E + +R+ + R +E+ R+ RE E++ +++ + K+ ++
Sbjct: 264 SEYEPINKPVRPKRKTK----AQRNKEKRRKELEREAKEEKQLKKKLAQLARLKEIAKEV 319
Query: 126 RDREKRRKVESDDSDEDKDRDRKRRRR 152
+EK R + + E ++ + +RR+
Sbjct: 320 AQKEKARARKKEQRKERGEKKKLKRRK 346
|
This nucleolar family of proteins are involved in 60S ribosomal biogenesis. They are specifically involved in the processing beyond the 27S stage of 25S rRNA maturation. This family contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60). This protein has been found to interact with herpes simplex type 1 regulatory proteins. Length = 387 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 9e-07
Identities = 44/234 (18%), Positives = 94/234 (40%), Gaps = 16/234 (6%)
Query: 6 RDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKER 65
+ E E+ K + + ++ + E D + KE ++ R R+ + + R+R KE
Sbjct: 539 ENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKEL 598
Query: 66 EEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKS 125
++K + E+ + E+ + E E E E E E + E EK + + ++ +
Sbjct: 599 KKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEE 658
Query: 126 RDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLV 185
+ + + + + ++ ++ ++ E E RE+L
Sbjct: 659 LEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEEL-------------EQLREELE 705
Query: 186 EDDSDKKEKKTREEELED---EQRKLDEEMEKRRRRVQEWQELKRKKEESEREN 236
E E + EELE E +L +E+EK + ++ +EL+ K ++
Sbjct: 706 ELLKKLGEIEQLIEELESRKAELEELKKELEKLEKALELLEELREKLGKAGLRA 759
|
Length = 908 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 9e-07
Identities = 54/255 (21%), Positives = 91/255 (35%), Gaps = 16/255 (6%)
Query: 6 RDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKER 65
R+ + +E+ K E+ + E EK ++ +++ E E
Sbjct: 424 RELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELEL 483
Query: 66 EEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKS 125
EE E ++ E E R+ E + RE E E E E + E + EK
Sbjct: 484 EELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLE 543
Query: 126 RDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRER---SLSRSNRHRDENDESPRE 182
E + K++ E+ + R + + +E R R R + + +
Sbjct: 544 ELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLK 603
Query: 183 KL-------------VEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKK 229
+L +E + E + EEELE E KL+ + E +EL+ K
Sbjct: 604 ELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKV 663
Query: 230 EESERENRGDANVEE 244
EE E E R + E
Sbjct: 664 EELEAEIRRELQRIE 678
|
Length = 908 |
| >gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 1e-06
Identities = 48/251 (19%), Positives = 112/251 (44%), Gaps = 14/251 (5%)
Query: 11 EKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEKRE 70
E+ +EK + + K ++ E+ + + + +R+ + + ++ E + E
Sbjct: 401 ERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELE 460
Query: 71 RAREKEREREKRDREREDRERERER-ERERRERDREREKRERERDRDKEKDRERKSRDRE 129
R R + R++ ++DRE R+R ER E+E E+ + E+ ER+ ++ + S
Sbjct: 461 RFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRKLELSGKGT 520
Query: 130 KRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVEDD- 188
+ VE + ++ + + + D V + S + + D+ PR + ++
Sbjct: 521 PVKVVEKLTLEAIEEAEEEYGIKEGD--VILVEDPSGGGARTAEELIDKKPRAIIRGEEM 578
Query: 189 SDKKEKKTREEEL------EDEQRKLDE----EMEKRRRRVQEWQELKRKKEESERENRG 238
S ++ + E+ + + +LDE + E+ RR ++EW++ ++E ++E
Sbjct: 579 SHAAAEEFFKNEIPVLPEGDVQIIRLDEFAVVDSEELRRAIEEWKKRFEERERRQKEEDI 638
Query: 239 DANVEEPKAGR 249
+EE + R
Sbjct: 639 LRIIEEYRRER 649
|
Length = 652 |
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 2e-06
Identities = 54/228 (23%), Positives = 93/228 (40%), Gaps = 19/228 (8%)
Query: 11 EKEKEKHREK-----SRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKER 65
E E+ E+ +ER ++ + ++ ++ +E+ + + R+ + E+E
Sbjct: 508 EDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEA 567
Query: 66 EEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKS 125
EE RE E + + E ER R + + E E+ +R+ E + ER+
Sbjct: 568 EEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREALAELNDERRE 627
Query: 126 RDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLV 185
R EKR +R R+ D+ E RE R+ + ++ +E E
Sbjct: 628 RLAEKR------------ERKRELEAEFDEARIEEARED-KERAEEYLEQVEEKLDELRE 674
Query: 186 EDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESE 233
E D + E E ELE E +L E E RV+ + L + EE E
Sbjct: 675 ERDDLQAEIGAVENELE-ELEELRERREALENRVEALEALYDEAEELE 721
|
Length = 880 |
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 2e-06
Identities = 47/237 (19%), Positives = 95/237 (40%), Gaps = 19/237 (8%)
Query: 11 EKEKEKHREKSRRSEREQSTD---SDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREE 67
E EK + E + +E KEK + + +++RE E E
Sbjct: 262 ELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAE 321
Query: 68 KRERAREKEREREKRDREREDRERERERERERRERDREREKRERERD---RDKEKDRE-R 123
+R E E ++ + E +RE E ER+R + + E +E D +E D+E
Sbjct: 322 ERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFA 381
Query: 124 KSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDEND-ESPRE 182
++RD K + + + + + + KR + +R+ E
Sbjct: 382 ETRDELKDYREKLEKLKREIN-ELKRELDRLQEELQRLSEE------LADLNAAIAGIEA 434
Query: 183 KLVEDDSDKKEK----KTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERE 235
K+ E + +K++K K +E +LE L + ++ +E+ ++++ + +RE
Sbjct: 435 KINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRE 491
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164 |
| >gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 2e-06
Identities = 81/435 (18%), Positives = 161/435 (37%), Gaps = 38/435 (8%)
Query: 7 DRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKERE 66
+ D E+E + E+ + S +E D E ++ + +++ + + E +
Sbjct: 3878 NSDSEEENQDLDEEVNDIPEDLSNSLNEKLWD-EPNEEDLLETEQKSNEQSAANNESDLV 3936
Query: 67 EKRE--RAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERK 124
K + +A E + +EK D E + + E + ++ + D D +D +
Sbjct: 3937 SKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPENEDLDLPEDLKLD 3996
Query: 125 SRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPRE-K 183
++ + + +SD D D + + + D + E +++ N DE+ +
Sbjct: 3997 EKEGDVSK--DSDLEDMDMEAADENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSD 4054
Query: 184 LVEDDSDKKEKKTREEELEDEQR-----KLDEEMEKRRRRVQEWQELKRKKEESERENRG 238
L EDD E E E+E+ K DEE+E+ V E Q + + +
Sbjct: 4055 LAEDDEKMNEDGFEENVQENEESTEDGVKSDEELEQ--GEVPEDQAIDNHPKMDAKSTFA 4112
Query: 239 DANVEEPKAGRNWTLDREDSDDEE-VPQTGKSETDMDADEE----PKPSEN-------QV 286
A +E + + E+ +E+ V G ++ + + +E PK + + +
Sbjct: 4113 SAEADEENTDKGIVGENEELGEEDGVRGNGTADGEFEQVQEDTSTPKEAMSEADRQYQSL 4172
Query: 287 GDAMLVDSDGGSAAPALQIGAAEDEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVE 346
GD + A +I ED AF +S E +K E N E
Sbjct: 4173 GDHL------REWQQANRIHEWEDLTESQSQAFDDS----EFMHVKEDEEEDLQALGNAE 4222
Query: 347 SKKMDRKGDRRSNGEQPKKSSNKSLGRIIPGEDSD---SDYGDLENDEKPLEDEDDDEFM 403
++ S + P ++ ++ E D D D+ + ++ ED EF
Sbjct: 4223 KDQIKSIDRDESANQNPDSMNSTNIAEDEADEVGDKQLQDGQDISDIKQTGEDTLPTEFG 4282
Query: 404 KRVKKTKAEKLSIVD 418
+ K +LS +
Sbjct: 4283 SINQSEKVFELSEDE 4297
|
Length = 4600 |
| >gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 2e-06
Identities = 58/299 (19%), Positives = 104/299 (34%), Gaps = 35/299 (11%)
Query: 28 QSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEKRERAREKEREREKRDRERE 87
+ + ++ D +E D + D D RE E + E E D E E
Sbjct: 3825 EDITNTLNEDDDLEELANEEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDSEEE 3884
Query: 88 DRERERE----RERERRERDRE--REKRERERDRDKEKDRERKSRDREKRRKVESDDSDE 141
+++ + E E + + E E + ++K E+ + + E + DD+
Sbjct: 3885 NQDLDEEVNDIPEDLSNSLNEKLWDEPNEEDLLETEQKSNEQSAANNESDLVSKEDDNKA 3944
Query: 142 DKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVEDDSDKKEKKTREEEL 201
+D+DR+ + +D +E +D +++ D + + E E
Sbjct: 3945 LEDKDRQEK----EDEEE--------------MSDDVGIDDEIQPDIQENNSQPPPENED 3986
Query: 202 ED--EQRKLDEEMEKRRRRVQ----EWQELKRKKEESERENRGDANVEEPKAGRNWTLDR 255
D E KLDE+ + + + KEE++ E E+P N TLD
Sbjct: 3987 LDLPEDLKLDEKEGDVSKDSDLEDMDMEAADENKEEADAEKDEPMQDEDPLEENN-TLDE 4045
Query: 256 EDSDDEEVPQTGKSETDMDADEEPKPSENQVGDAMLVDSDGGSAAPALQIGAAEDEDID 314
+ D+ D + E EN + + S Q ED+ ID
Sbjct: 4046 DIQQDDFSDLA----EDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPEDQAID 4100
|
Length = 4600 |
| >gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 2e-06
Identities = 60/402 (14%), Positives = 122/402 (30%), Gaps = 66/402 (16%)
Query: 7 DRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRD-------RDRDR 59
R ++ K+K + + E D + D D E+E D +++
Sbjct: 1046 VRFKDIIKKKSEKITAEEEEGAEEDDEADDEDDEEELGAAVSYDYLLSMPIWSLTKEKVE 1105
Query: 60 DREKEREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEK 119
E E+K E+ EK + +D ED ++ E E +E E+E + +R + K K
Sbjct: 1106 KLNAELEKK-EKELEKLKNTTPKDMWLEDLDKFEE-ALEEQEEVEEKEIAKEQRLKSKTK 1163
Query: 120 DRERKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDES 179
+ K R + ++K + D K V S + + + D+
Sbjct: 1164 GKASKLRKPKLKKKEKKKKKSSA-----------DKSKKASVVGNSKRVDSDEKRKLDDK 1212
Query: 180 PREKLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGD 239
P K +E DEE + + ++ + +K S+
Sbjct: 1213 PDNKKSNSSGSDQED--------------DEEQKTKPKKSSVKRLKSKKNNSSKS----- 1253
Query: 240 ANVEEPKAGRNWTLDREDSDDEEVPQTGKSETDMDADEEPKPSENQVGDAMLVDSDGGSA 299
+ + + + + + + + + + + S
Sbjct: 1254 SEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESN---------------- 1297
Query: 300 APALQIGAAEDEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMDRKGDRRSN 359
G+ + + LK + +SK ++ +
Sbjct: 1298 -----GGSKPSSPTKKKV---KKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQS 1349
Query: 360 GEQPKKSSNKSLGRIIPGEDSDSDYGDLENDEKPLEDEDDDE 401
++ K ED D D DE ED++DD+
Sbjct: 1350 SRLLRRPRKKKSDSSS--EDDDDSEVDDSEDEDD-EDDEDDD 1388
|
Length = 1388 |
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 3e-06
Identities = 59/278 (21%), Positives = 120/278 (43%), Gaps = 46/278 (16%)
Query: 6 RDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKER 65
D RE EK R + + E+ E+K ++ +E K + ++ ++ + +ER
Sbjct: 306 LDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKK-----KLKELEKRLEELEER 360
Query: 66 EEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKS 125
E E A+ K+ E E+ + E + E+E E ++ +E+ E E + + E K
Sbjct: 361 HELYEEAKAKKEELERLKKRLTGLTPE-KLEKELEELEKAKEEIEEEISKITARIGELKK 419
Query: 126 RDREKRRKVE-----------------------------------SDDSDEDKDRDRKRR 150
+E ++ +E + E ++++RK R
Sbjct: 420 EIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLR 479
Query: 151 RRHDDDHKERVRERSLSRSNRHRDENDESPREKLVEDDSDKKEKKTRE-EELEDEQRKLD 209
+ + K +E L + + E + EKL + + ++ EKK E E+L+++ KL
Sbjct: 480 KELRELEKVLKKESELIK-LKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLK 538
Query: 210 EEMEKRRRRVQEWQELKRKKEESERENRGDANVEEPKA 247
E++ ++ +++ +ELK+K E E++ +EE A
Sbjct: 539 GEIKSLKKELEKLEELKKKLAELEKKLD---ELEEELA 573
|
Length = 880 |
| >gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 3e-06
Identities = 47/249 (18%), Positives = 97/249 (38%), Gaps = 3/249 (1%)
Query: 35 DKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEKRERAREKEREREKRDREREDRERERE 94
++ +E E+ + + + + ++E E E K E E E E++ E+E E E E
Sbjct: 643 ERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKG-EQEG-EGEIE 700
Query: 95 RERERRERDREREKRERERDRDKEKDRERKSRDREKRRKVESDDSDEDKDRDRKRRRRHD 154
+ + + E E+ E E + + E + + + + D+ + + + + D
Sbjct: 701 AKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGD 760
Query: 155 DDHKERVRERSLSRSNRHRDENDESPREKLVEDDSDKKEKKTREEELEDEQRKLDEEMEK 214
E E + DE + E + E K E + K + E +
Sbjct: 761 RKETEHEGETE-AEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQS 819
Query: 215 RRRRVQEWQELKRKKEESERENRGDANVEEPKAGRNWTLDREDSDDEEVPQTGKSETDMD 274
+ + + ++E EN+G+A +E D DS++EE + + E + +
Sbjct: 820 ETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEE 879
Query: 275 ADEEPKPSE 283
+EE + E
Sbjct: 880 EEEEEEEEE 888
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 3e-06
Identities = 44/222 (19%), Positives = 91/222 (40%), Gaps = 10/222 (4%)
Query: 20 KSRRSERE----QSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDRE-KEREEKRERARE 74
KS+ ER+ + ++ + E K+ ++ + + + E E E A E
Sbjct: 150 KSKPKERKEILDELFGLEKYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALE 209
Query: 75 KEREREKRDREREDRERERERERE-----RRERDREREKRERERDRDKEKDRERKSRDRE 129
+E + K+ E ++ + E E E+E R + E EK E + + + E +
Sbjct: 210 EELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEAL 269
Query: 130 KRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVEDDS 189
K R+ E + + + ++ R ++ +E R E E EKL +
Sbjct: 270 KIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEE 329
Query: 190 DKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEE 231
++ + + E+LE E +L EE + + ++E + ++ E
Sbjct: 330 RLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLE 371
|
Length = 908 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 4e-06
Identities = 33/205 (16%), Positives = 72/205 (35%), Gaps = 18/205 (8%)
Query: 3 HSHRDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDRE 62
+ + +E+ + ++ + +E+ + + + E+ + + +
Sbjct: 313 ELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSA-LL 371
Query: 63 KEREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRE 122
+E EE E RE+ E E E E E E +RE + E+ ER +R ++ E
Sbjct: 372 EELEELFEALREELAE-----LEAELAEIRNELEELKREIESLEERLERLSERLEDLKEE 426
Query: 123 RKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPRE 182
K + E ++ + + + ++ +E + + E
Sbjct: 427 LKELEAEL------EELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLE 480
Query: 183 KLVEDDSDKKEKKTREEELEDEQRK 207
K + + R + LE EQR
Sbjct: 481 KEL------SSLEARLDRLEAEQRA 499
|
Length = 1163 |
| >gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 4e-06
Identities = 27/130 (20%), Positives = 50/130 (38%), Gaps = 1/130 (0%)
Query: 4 SHRDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREK 63
SH E+E K E R +E E +++E + +E+ K +
Sbjct: 33 SHSSTVEEEEARK-EEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAA 91
Query: 64 EREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRER 123
R E R E R + ++ ++++ + ++ + + K R R K R
Sbjct: 92 AEAAARPAEDEAARPAEAAARRPKAKKAAKKKKGPKPKKKKPKRKAARGGKRGKGGKGRR 151
Query: 124 KSRDREKRRK 133
+ R R +RRK
Sbjct: 152 RRRGRRRRRK 161
|
Length = 746 |
| >gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3 | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 5e-06
Identities = 32/204 (15%), Positives = 75/204 (36%), Gaps = 4/204 (1%)
Query: 5 HRDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKE 64
++ RE+ + K R K ++ + ++ ++EK++ R+ + + + D + E+E
Sbjct: 161 EEEKKRERVRAKSRPKKPPKKKPPN--KKKEPPEEEKQRQAAREAVKGKPEEPDVNEERE 218
Query: 65 REEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERK 124
+EE + RE + D R+ E R R ++ R+ K E +
Sbjct: 219 KEEDDGKDRETTTSPMEEDESRQSSEISR-RSSSSLKKPDPSPSMASPETRESSKRTETR 277
Query: 125 SRDREKRRKVESDDSDEDKDRDRKRRRRHDD-DHKERVRERSLSRSNRHRDENDESPREK 183
R + + R +++ D + + S + E+++
Sbjct: 278 PRTSLRPPSARPASARPAPPRVKRKEIVTVLQDAQGVGKIVSNVILEGKKSEDEDDENFV 337
Query: 184 LVEDDSDKKEKKTREEELEDEQRK 207
+ E+E ED +++
Sbjct: 338 VEAAAQAPDIVAGGEDEAEDGEQQ 361
|
This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 5e-06
Identities = 39/255 (15%), Positives = 88/255 (34%), Gaps = 20/255 (7%)
Query: 16 KHREKSRRSEREQST--DSDEDKHDKEKEKDKHRDRDRRRDRDRDR--DREKEREEKRER 71
+ E E Q + E++K R+R +R + + +E E K +
Sbjct: 275 EVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDE 334
Query: 72 AREKEREREKR----------DREREDRERERERERERRERDREREKRERERDRDKEKDR 121
E+ E E++ + E E R + E + + + +
Sbjct: 335 LAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQ 394
Query: 122 ERKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPR 181
+ +R + + ++ ++R ++ +E + + +E
Sbjct: 395 IASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEE-----L 449
Query: 182 EKLVEDDSDKKEKKTR-EEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGDA 240
E+L E+ +E EELE+ ++ LD + + L+R +E E + G
Sbjct: 450 EELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVK 509
Query: 241 NVEEPKAGRNWTLDR 255
+ + ++G + L
Sbjct: 510 ALLKNQSGLSGILGV 524
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
| >gnl|CDD|202096 pfam02029, Caldesmon, Caldesmon | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 5e-06
Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 4/142 (2%)
Query: 6 RDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDRE--K 63
E +KE+ + E+ + +E+ + K KH + R E K
Sbjct: 141 WRDAEECQKEEKEPEPEEEEKPKRGSLEENNGEFMTHKLKHTENTFSRGGAEGAQVEAGK 200
Query: 64 EREEKRERAREKEREREKRDREREDRERERERERERRERDR-EREKRERERD-RDKEKDR 121
E E+ +++ +E E E+ ++RE+R + E E +RR+++ +R+ RE E R KE+
Sbjct: 201 EFEKLKQKQQEAALELEELKKKREERRKVLEEEEQRRKQEEADRKSREEEEKRRLKEEIE 260
Query: 122 ERKSRDREKRRKVESDDSDEDK 143
R++ EKR+KV D EDK
Sbjct: 261 RRRAEAAEKRQKVPEDGLSEDK 282
|
Length = 431 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 5e-06
Identities = 51/240 (21%), Positives = 98/240 (40%), Gaps = 13/240 (5%)
Query: 3 HSHRDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDRE 62
+ ++E E + R E+E+ + + E + + R+ +R
Sbjct: 225 QEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELER-LL 283
Query: 63 KEREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRE 122
+E EEK ER E ERE E E E E + EK + +R ++ + +
Sbjct: 284 EELEEKIERLEELEREIE------ELEEELEGLRALLEELEELLEKLKSLEERLEKLEEK 337
Query: 123 RKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPRE 182
+ + E E + +R + + E+ E++L R + + E +E
Sbjct: 338 LEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQE-LKE 396
Query: 183 KLVEDDSD----KKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENRG 238
+L E + ++E + E+ELE+ +R+L EE+E+ ++++E KE E G
Sbjct: 397 ELAELSAALEEIQEELEELEKELEELEREL-EELEEEIKKLEEQINQLESKELMIAELAG 455
|
Length = 908 |
| >gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 6e-06
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 8/136 (5%)
Query: 60 DREKEREEKRERAREKEREREKRDREREDRERERER--------ERERRERDREREKRER 111
+ E +EE + A E+ + + E E + E E R
Sbjct: 40 EEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAAEAAARPA 99
Query: 112 ERDRDKEKDRERKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNR 171
E + + + + +K K + + K RK R + R R R R
Sbjct: 100 EDEAARPAEAAARRPKAKKAAKKKKGPKPKKKKPKRKAARGGKRGKGGKGRRRRRGRRRR 159
Query: 172 HRDENDESPREKLVED 187
+ + + P EK+ +
Sbjct: 160 RKKKKKQKPTEKIPRE 175
|
Length = 746 |
| >gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27 | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 7e-06
Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 8/127 (6%)
Query: 12 KEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEKRER 71
KEK++ E + + E E+ + + + E + D D D + ER + E
Sbjct: 230 KEKKEASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSG---ERSDSEEE 286
Query: 72 AREKEREREKRDREREDRERERERERERRERDREREKRER-----ERDRDKEKDRERKSR 126
EKE+E+ KR ++ + E E E E E E+ E +++EK+ S
Sbjct: 287 TEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPVEEEESEEPEPPPLPKKEEEKEEVTVSP 346
Query: 127 DREKRRK 133
D +RR
Sbjct: 347 DGGRRRG 353
|
This protein forms the C subunit of DNA polymerase delta. It carries the essential residues for binding to the Pol1 subunit of polymerase alpha, from residues 293-332, which are characterized by the motif D--G--VT, referred to as the DPIM motif. The first 160 residues of the protein form the minimal domain for binding to the B subunit, Cdc1, of polymerase delta, the final 10 C-terminal residues, 362-372, being the DNA sliding clamp, PCNA, binding motif. Length = 427 |
| >gnl|CDD|237496 PRK13766, PRK13766, Hef nuclease; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 7e-06
Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 30/157 (19%)
Query: 684 VNKDITQLVEVRPESDRFLRLLELLGEWYEKG---KILIFVHSQEKCDALFRDLLKHGYP 740
K + + E+ E + +L E++ E K +I++F ++ + + L K G
Sbjct: 332 FRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIK 391
Query: 741 CLSLHGAKDQTDRES-----------TISDFKSNVCNLLIATSVAARGLDVKELELVINF 789
+ G Q ++ + F++ N+L++TSVA GLD+ ++LVI F
Sbjct: 392 AVRFVG---QASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVI-F 447
Query: 790 DAPNHYED------YVHRVGRTGRAGRKGCAITFISE 820
YE + R GRTGR +G + I++
Sbjct: 448 -----YEPVPSEIRSIQRKGRTGR-QEEGRVVVLIAK 478
|
Length = 773 |
| >gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 8e-06
Identities = 34/215 (15%), Positives = 61/215 (28%), Gaps = 12/215 (5%)
Query: 63 KEREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRE 122
KE A R R R+ E+ + K E
Sbjct: 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAA 115
Query: 123 RKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPRE 182
++ + + + R R+ + + R+ R E +E
Sbjct: 116 AEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARA---DAAERTEEEERDER 172
Query: 183 KLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGDANV 242
+ D D++ + R E E+R D + RR R + + RE RG +
Sbjct: 173 RRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRRE---------QGDRREERGRRDG 223
Query: 243 EEPKAGRNWTLDREDSDDEEVPQTGKSETDMDADE 277
+ + R R+ D+ G + D
Sbjct: 224 GDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGR 258
|
Length = 672 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (119), Expect = 8e-06
Identities = 52/286 (18%), Positives = 113/286 (39%), Gaps = 16/286 (5%)
Query: 11 EKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRR------------RDRDRD 58
E+ E E++ + + H+ + E H +D ++ +R
Sbjct: 1030 EELTEYGNNDDVLKEKDIIDEDIDGNHEGKAEAKAHVGQDEGLKPSYKDFDFDAKEDNRA 1089
Query: 59 RDREKEREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKE 118
+ +E K E A++ E + + R+ E+ +++ E R+ E + + R+ E R E
Sbjct: 1090 DEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAE 1149
Query: 119 KDRERK-SRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDEND 177
+ + +R E RK E ED + R+ + E +R+ + R +
Sbjct: 1150 DAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRK---AEDARKAEAAR 1206
Query: 178 ESPREKLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENR 237
++ E+ E+ ++ K E + E+ K D E K+ + +E+++ +E
Sbjct: 1207 KAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFA 1266
Query: 238 GDANVEEPKAGRNWTLDREDSDDEEVPQTGKSETDMDADEEPKPSE 283
+ + R ++ + ++ + K+E ADE K +E
Sbjct: 1267 RRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAE 1312
|
Length = 2084 |
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 9e-06
Identities = 59/244 (24%), Positives = 92/244 (37%), Gaps = 37/244 (15%)
Query: 9 DREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEK 68
R +E E E+ R E + + E R+ D E+ EE
Sbjct: 314 ARREELEDRDEELRDRLEECRVAAQAHNEEAE------------SLREDADDLEERAEEL 361
Query: 69 RERAREKEREREKRDREREDRERERERERERRERDRER-----EKRERERDRDKEKDRER 123
RE A E E E E+ EDR E E E E RER D E+ RE
Sbjct: 362 REEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDF-LEELREE 420
Query: 124 KSRDREKRRKVESDDSDEDKDRDRKRRRR------------HDDDHKERVRERSLSRSNR 171
+ RE+ ++E+ + + H E + E R
Sbjct: 421 RDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEED------R 474
Query: 172 HRDENDESPREKLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEE 231
R E E+ E L E+ + +E+ R E+L + + ++ E +E+RR ++E +R+ E
Sbjct: 475 ERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRI-ERLEERREDLEELIAERRETIE 533
Query: 232 SERE 235
+RE
Sbjct: 534 EKRE 537
|
Length = 880 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 1e-05
Identities = 46/228 (20%), Positives = 94/228 (41%), Gaps = 5/228 (2%)
Query: 13 EKEKHREKSRRSEREQSTDSDEDK-HDKEKEKDKHRDRDRRRDRDRDRDREKEREEKRER 71
++ K + + E++ + ED + EK+ +K + + +R ++ E E
Sbjct: 171 KERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALL 230
Query: 72 AREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRDREKR 131
+ + R++ + E+ R E E +E E EK E + E+ RE +E+
Sbjct: 231 LAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEEL 290
Query: 132 RKVESDDSDEDKDRDR-KRRRRHDDDHKERVRERSLSRSNRH--RDENDESPREKLVEDD 188
+++ + + + + + R ++ E + ER + E E L E +
Sbjct: 291 LELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELE 350
Query: 189 SDKKEKKTREEELEDEQRKLDEEMEKR-RRRVQEWQELKRKKEESERE 235
E + +EELE++ L EE+E+ +E EL+ + E E
Sbjct: 351 QLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNE 398
|
Length = 1163 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 1e-05
Identities = 48/205 (23%), Positives = 92/205 (44%), Gaps = 19/205 (9%)
Query: 59 RDREKEREEKRERAREKEREREKRDREREDR----ERERERERERRERDREREKRE---- 110
++R++E E K ER E E E E + ER+ E+ +E E + E
Sbjct: 171 KERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALL 230
Query: 111 ----RERDRDKEKDRERKSRDREKRRKVESDDSDEDKDRDRKRRRRHD-DDHKERVRERS 165
+E ++ E+ E SR E+ +++ + + +K+ + + + + E ++E
Sbjct: 231 LAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEEL 290
Query: 166 LSRSNRHRD--ENDESPREKLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQ 223
L + RE+L E +++ +E + R EEL+++ L EE+E+R ++E +
Sbjct: 291 LELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELE 350
Query: 224 ----ELKRKKEESERENRGDANVEE 244
EL+ KEE E + E
Sbjct: 351 QLLAELEEAKEELEEKLSALLEELE 375
|
Length = 1163 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 1e-05
Identities = 61/292 (20%), Positives = 117/292 (40%), Gaps = 25/292 (8%)
Query: 10 REKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEKR 69
+ +E+ RE R E + ++ ++E E+ + R + + ++ +
Sbjct: 269 LKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLE 328
Query: 70 ERAREKEREREKRDRERED-RERERERERERRERDREREKRERERDRDKEKDRERKSRDR 128
ER + E + EK + E E+ E + E + ER +E E+R E +++ EK ER +
Sbjct: 329 ERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERL-KQL 387
Query: 129 EKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVR-ERSLSRSNRH-----RDENDESPRE 182
E+ + ++ E + + ++ KE ER L N +E
Sbjct: 388 EEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKE 447
Query: 183 KLVEDDSDKKEK---------KTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESE 233
++ + + EK + E+EL + EE+E+ R +E EL+ + EE E
Sbjct: 448 LMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEELEEELSREKEEAELREEIEELE 507
Query: 234 RENRGDANVEEPKAGRNWTLDREDSDDEEVPQTGKSETDMDADEEPKPSENQ 285
+E R +EE + + EE K E + EE + + +
Sbjct: 508 KELR---ELEEELIELLELEEALKEELEE-----KLEKLENLLEELEELKEK 551
|
Length = 908 |
| >gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-05
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 35 DKHDKEKEKDK-HRDRDRRRDRDRDRDREKEREEKRERAREKEREREKRDREREDRERER 93
D D E+E R D RD + D D ++E +E+ E + + E + + D + +D R
Sbjct: 102 DDGDIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATR 161
Query: 94 ERERERRERDREREKRERERDRD 116
ER ERR R RE E++ E +
Sbjct: 162 ERSLERRRRRREWEEKRAELEFY 184
|
CDC45 is an essential gene required for initiation of DNA replication in S. cerevisiae, forming a complex with MCM5/CDC46. Homologues of CDC45 have been identified in human, mouse and smut fungus among others. Length = 583 |
| >gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (117), Expect = 1e-05
Identities = 40/100 (40%), Positives = 52/100 (52%), Gaps = 3/100 (3%)
Query: 52 RRDRDRDRDREKEREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRER 111
R D+D E+E +A E + EK+ ER +RE ERER ER ERE+ ER
Sbjct: 429 RVDKDHAERARIEKENAHRKALEM-KILEKKRIERLEREERERLERERMER-IERERLER 486
Query: 112 ERDRDKEKDRERKSRDREKRRKVESDDSDEDKDRDRKRRR 151
ER + +R+R RDR R + E D E +DR K RR
Sbjct: 487 ERLERERLERDRLERDRLDRLERERVDRLE-RDRLEKARR 525
|
Length = 1021 |
| >gnl|CDD|221821 pfam12871, PRP38_assoc, Pre-mRNA-splicing factor 38-associated hydrophilic C-term | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-05
Identities = 34/92 (36%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Query: 33 DEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEKRERAREKEREREKRDREREDRERE 92
+ED ++E+ +++ D + RR +RD DR + +R R R + R+R ++ R R R+R+
Sbjct: 7 EEDLDEEEESEEEEDDEEIRRKAERDVDRGRRSPRRRTRRRSRRRKRSRKRRRRR-RDRD 65
Query: 93 RERERERRERDREREKRERERDRDKEKDRERK 124
R R R+R +RDR+R R R R R + +DR R+
Sbjct: 66 RARYRDRDDRDRDRYDRSRSRSRSRSRDRRRR 97
|
This domain is a hydrophilic region found at the C-terminus of plant and metazoan pre-mRNA-splicing factor 38 proteins. The function is not known. Length = 97 |
| >gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207) | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 35/153 (22%), Positives = 74/153 (48%), Gaps = 25/153 (16%)
Query: 75 KEREREKRDREREDRERERERERERRER-DREREKRER--ERDRDKEKDRERKSRDREKR 131
K+ +R+K+ ++ + ++++ERE+ER E R+R +E+ E R K + K R + +
Sbjct: 96 KQAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQ-AAKQRTPKHK 154
Query: 132 RKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVEDDSDK 191
++ S + R ++ K+R+ E +KL K
Sbjct: 155 KEAAESASSSLSGSAKPERNVSQEEAKKRL---------------QEWELKKL------K 193
Query: 192 KEKKTREEELEDEQRKLDEEMEKRRRRVQEWQE 224
++++ REEE +++K EE E++++ + WQ+
Sbjct: 194 QQQQKREEERRKQRKKQQEEEERKQKAEEAWQK 226
|
This family is found in eukaryotes; it has several conserved tryptophan residues. The function is not known. Length = 261 |
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 2e-05
Identities = 66/230 (28%), Positives = 105/230 (45%), Gaps = 14/230 (6%)
Query: 23 RSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKER-EEKRERAREKEREREK 81
S++ S D + + ++++EKD H + + D E ER EE+RE+ARE E ++
Sbjct: 182 LSDQRGSLDQLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADE 241
Query: 82 RDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRDREKRRKVESDDSDE 141
E E+R RE E D E ER+R++ + R R+R + + E DD
Sbjct: 242 VLEEHEER-REELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLA 300
Query: 142 DKDRDR------KRRRRHDDDHKERVRER-SLSRSNRHRDEND-ESPREKLVEDDSDKKE 193
+ D + RR +D E +R+R R + ES RE + + +E
Sbjct: 301 EAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEE 360
Query: 194 KKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGDANVE 243
+ ELE E + E +E RR ++E +E + E RE GDA V+
Sbjct: 361 LREEAAELESELEEAREAVEDRREEIEELEE----EIEELRERFGDAPVD 406
|
Length = 880 |
| >gnl|CDD|217927 pfam04147, Nop14, Nop14-like family | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 2e-05
Identities = 60/296 (20%), Positives = 123/296 (41%), Gaps = 39/296 (13%)
Query: 18 REKSRRSEREQSTDSDEDKHDKEKEKDKHRDR----DRRRDRDRDRDREKEREEKRERAR 73
RE+ R+S+++ + ++D D+++ H + + D RD D + + +
Sbjct: 92 RERQRQSKKKSMFNLEDD--DEDEFVLTHLGQSLSEIDKDDDVRDDDDFDDDDLGDLASD 149
Query: 74 EKEREREKRDREREDRERERERERERRERDRE---REKRER-ERDRDKEKDRERKSRDRE 129
++ + + ED E + ER++ ++E +E + K + ER + KE+D + RE
Sbjct: 150 DRAAHFGGGEDDEEDEEEQPERKKSKKEVMKEVIAKSKFYKAERQKAKEEDED----LRE 205
Query: 130 KRRKVESDDSDEDKDRDRKRRRRH-----DDDHKERVRERSLSRSNRHRDENDESPREKL 184
+ D + + DD++ +RVRE + R + P ++
Sbjct: 206 ELDDDFKDLMSLLRTVKPPPKPPMTPEEKDDEYDQRVRELTFDRRAQ--------PTDRT 257
Query: 185 VEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESER--ENRGDANV 242
KT EE ++E +L + +R RR++ +E ++E+S+ ++ D
Sbjct: 258 ----------KTEEELAKEEAERLKKLEAERLRRMRGEEEDDEEEEDSKESADDLDDEFE 307
Query: 243 EEPKAGRNWTLDREDSDDEEVPQTGKSETDMDADEEPKPSENQVGDAMLVDSDGGS 298
+ ED ++EE + E D D D E + + + D + D S
Sbjct: 308 PDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDS 363
|
Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809 |
| >gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 2e-05
Identities = 24/49 (48%), Positives = 36/49 (73%), Gaps = 4/49 (8%)
Query: 63 KEREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRER 111
K+REE E+A+ RE E++ RE +RE+E+E+ERE RER+RE E+ +
Sbjct: 579 KKREEAVEKAK---REAEQKAREEREREKEKEKERE-REREREAERAAK 623
|
Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979 |
| >gnl|CDD|130009 TIGR00934, 2a38euk, potassium uptake protein, Trk family | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 2e-05
Identities = 56/259 (21%), Positives = 87/259 (33%), Gaps = 17/259 (6%)
Query: 3 HSHRDRDREKEKEKHREKSRRSEREQ-STDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDR 61
H R ++K E +R E +Q S D D E D ++ +R RD D
Sbjct: 174 HGSAKRRDFQDKLFSGEFVKRDEPDQNSPDVKSDTRADESISDLEFEKFAKRRGSRDVDP 233
Query: 62 EKEREEKRERAREKEREREKRDREREDRERERERERERRER-----DREREKRERER--D 114
E ER REK ER E +E+ ER D ER + R D
Sbjct: 234 EDLYRSIMMLQGIHERIREKSSANSRSDERSSESIQEQVERRPSTSDIERNSQSLTRRYD 293
Query: 115 RDKEKDRERKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRD 174
R R + R D + D+ +D + + D+ K R++ R R
Sbjct: 294 DKSFDKAVRLRRSKTIDRAEACDLEELDRAKDFE--KMTYDNWKAHHRKKKNFRP---RG 348
Query: 175 ENDESPREKLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESER 234
N + + DSD+ + L EE K++++
Sbjct: 349 WNLKFRKASRFPKDSDRNY-EDNGNHLSASSSFGSEEPSLSSEENLYPTYNKKREDSRHT 407
Query: 235 ENRGDAN---VEEPKAGRN 250
++ + +P GRN
Sbjct: 408 LSKTMSTNYLSWQPTIGRN 426
|
The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system [Transport and binding proteins, Cations and iron carrying compounds]. Length = 800 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (114), Expect = 3e-05
Identities = 62/276 (22%), Positives = 105/276 (38%), Gaps = 24/276 (8%)
Query: 23 RSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEKRERAREKEREREKR 82
++E + DE K+ D D R D + K E K+ + E R+
Sbjct: 1059 KAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAE 1118
Query: 83 D-REREDRERERERERERRERDREREKRERERDRDKEKDRE-------RKSRDREKRRKV 134
+ +++ + R+ E R+ + + E R+ E + E R+ ++R E +K
Sbjct: 1119 EAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKA 1178
Query: 135 ESDDSDEDKDRDRKRRRRHDDDHKERVR----ERSLSRSNRHRDENDESPREKLVEDDSD 190
E+ E+ + + R+ D E R ER + + D +K E D
Sbjct: 1179 EAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKD 1238
Query: 191 KKEKKTREEELEDEQRKLDEEMEKR---RRRVQEWQELKRKKEESERENRGDANVEEPKA 247
+E K EEE +E+ + EE RR+ E RK +E ++ EE K
Sbjct: 1239 AEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKK-------AEEKKK 1291
Query: 248 GRNWTLDREDSDDEEVPQTGKSETDMDADEEPKPSE 283
E +E + K+E ADE K +E
Sbjct: 1292 ADEAKKAEEKKKADEAKK--KAEEAKKADEAKKKAE 1325
|
Length = 2084 |
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 3e-05
Identities = 47/212 (22%), Positives = 87/212 (41%), Gaps = 13/212 (6%)
Query: 7 DRDREKEKEKHREKSR-RSEREQSTDSDEDKHDK-EKEKDKHRDRDRRRDRDRDRDREKE 64
+ RE+ +E + +E E+ ++ + ++ E+ +++ + + + ++R E
Sbjct: 533 EEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE 592
Query: 65 REEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERK 124
R A + +R RE+ + E ER R+R EKRER+R+ + E D R
Sbjct: 593 RIRTLLAAIADAEDEIERLREKREALAELNDER----RERLAEKRERKRELEAEFDEARI 648
Query: 125 SRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKL 184
RE + + E ++ D R R D + E L R+ +
Sbjct: 649 EEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERREA------ 702
Query: 185 VEDDSDKKEKKTRE-EELEDEQRKLDEEMEKR 215
+E+ + E E EELE L E+ +R
Sbjct: 703 LENRVEALEALYDEAEELESMYGDLRAELRQR 734
|
Length = 880 |
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 3e-05
Identities = 35/239 (14%), Positives = 93/239 (38%), Gaps = 2/239 (0%)
Query: 9 DREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEK 68
+ E+ + EK + E E+ +++ EK ++ +R + +E +E+
Sbjct: 819 EEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEE 878
Query: 69 RERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRDR 128
++ + E E ++ + ++ ++E E E ++ E+E ER ++ + +
Sbjct: 879 ELEEQKLKDELESKEEKEKEEKKELEEESQKDNLLEEKENEIEERIAEEAIILLKYESEP 938
Query: 129 EKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVEDD 188
E+ E+D+ ++++D + R+ + +++ E E K
Sbjct: 939 EELLLEEADEKEKEEDNKEEEEERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKK 998
Query: 189 SDKKEKKTR--EEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGDANVEEP 245
+E+K E +E+ ++ E +E + ++ E + ++P
Sbjct: 999 ERLEEEKKELLREIIEETCQRFKEFLELFVSINRGLNKVFFYLELGGSAELRLEDSDDP 1057
|
This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162 |
| >gnl|CDD|224123 COG1202, COG1202, Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 3e-05
Identities = 80/360 (22%), Positives = 147/360 (40%), Gaps = 48/360 (13%)
Query: 477 KIMETIRKLNYEKPMPIQAQALPV-IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPV 535
K +++ E+ +P+Q A+ ++ G + + V+ T SGKTL L + P
Sbjct: 204 KFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGI-------PR 256
Query: 536 AAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGT---- 591
G L + P L Q + D ++ +G++ V + G + E
Sbjct: 257 LLSGGKKMLFLVPLVALANQKYEDFKERYSKLGLK-VAIRVGMSRIKTREEPVVVDTSPD 315
Query: 592 -EIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR---P 647
+I+V T ID L +G + ++ V V+DE + D P++ ++ +R P
Sbjct: 316 ADIIVGTY-EGIDYLLRTGKDLGDIGTV---VIDEIHTLEDEERGPRLDGLIGRLRYLFP 371
Query: 648 DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQ-LVEVRPESDRFLRLLE 706
Q + SAT E LA+K+ K V R V + + LV R ES+++ +
Sbjct: 372 GAQFIYLSATVGNPEE-LAKKLGAKLVLYD--ERPV---PLERHLVFARNESEKWDIIAR 425
Query: 707 LLGEWYE-------KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISD 759
L+ + +G+ ++F +S+ +C L L G H +R+S
Sbjct: 426 LVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERA 485
Query: 760 FKSNVCNLLIATSVAARGLD-------VKELELVINFDAPNHYEDYVHRVGRTGRAGRKG 812
F + ++ T+ A G+D + L + I + + ++ + GRAGR
Sbjct: 486 FAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQML------GRAGRPD 539
|
Length = 830 |
| >gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 3e-05
Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 14/135 (10%)
Query: 492 PIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRE 551
P Q ++S + + A TGSGKTL +L +L + + G G V I P +
Sbjct: 35 PQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLE------GGGKVVYI-VPLKA 87
Query: 552 LVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGK 611
L ++ + + + + +G+R G E +++V TP ++ D L
Sbjct: 88 LAEEKYEEFSRLEE-LGIRVGISTGDY---DLDDERLARYDVIVTTPEKL-DSLTRKRPS 142
Query: 612 ITNLRRVTYLVMDEA 626
+ V +V+DE
Sbjct: 143 W--IEEVDLVVIDEI 155
|
Length = 766 |
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 4e-05
Identities = 44/256 (17%), Positives = 98/256 (38%), Gaps = 14/256 (5%)
Query: 8 RDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREE 67
K+ K S + + + + +E +K + + +E E+
Sbjct: 625 VVEGILKDTELTKLLESAKAKESGLRKGVSLEEGLAEKSE----LKASLSELTKELLAEQ 680
Query: 68 KRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRD 127
+ + E E + + R +E+ +++ +R + + + EK E D+ +E +
Sbjct: 681 ELQEKAESELAKNEILRRQEEIKKKEQRI-KEELKKLKLEKEELLADKVQEAQDKINEEL 739
Query: 128 REKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVED 187
+ +K++ + +E+K R +K +E + LS + E +E + VE+
Sbjct: 740 KLLEQKIKEKEEEEEKSRLKKE--------EEEEEKSELSLKEKELAEEEEKTEKLKVEE 791
Query: 188 DSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGDANVEEPKA 247
+ ++K K EEEL + +L EE E ++ ++ KEE E + E+
Sbjct: 792 EKEEKLKAQ-EEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLE 850
Query: 248 GRNWTLDREDSDDEEV 263
++
Sbjct: 851 KLAEEELERLEEEITK 866
|
This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162 |
| >gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family | Back alignment and domain information |
|---|
Score = 47.8 bits (113), Expect = 4e-05
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 11/65 (16%)
Query: 67 EKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSR 126
+KRE A EK + RE + RE+RERE+E+E+ER ERER+R+ E+ + S
Sbjct: 579 KKREEAVEKAK-REAEQKAREEREREKEKEKER----------EREREREAERAAKASSS 627
Query: 127 DREKR 131
E R
Sbjct: 628 SHESR 632
|
Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979 |
| >gnl|CDD|165222 PHA02896, PHA02896, A-type inclusion like protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 4e-05
Identities = 49/277 (17%), Positives = 108/277 (38%), Gaps = 35/277 (12%)
Query: 7 DRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEK-------EKDKHRDRDRRRDRDRDR 59
D D+ + ++ RR + + D + DK K ++ D D+ + + D
Sbjct: 342 DDDKHPSYDYSNDRERRPKDYKEYYIDNFECDKMKNCPSTNGTLNRDEDEDKIEEDNDDY 401
Query: 60 DREKEREEKRERA---REKEREREKRDREREDRERERERERERRERDREREKRERERDRD 116
+ + E + ++ A + + + + +R+ R + + + E R + K + D D
Sbjct: 402 NNDDEDDLIKDEAPILNRRHGQMDDKYDKRDHRYKNNKYDIYDDESPRYKYKDDDYDDND 461
Query: 117 KEKDRE---RKSRDREKRRKVESDDSDEDKDRD------RKRRRRH----------DDDH 157
D +K+ + E + E + D D D R RR + D H
Sbjct: 462 DNDDDHIIPKKANNLEDAKDFEDEMMDAIADDDYTPKSIRNRRNGYLLKDEDRYYYDRGH 521
Query: 158 KERVRERSLSRSNRHRDENDESPREKLVED---DSDKKEKKTREEELEDEQRKLDEEMEK 214
+ E+ + + +DE ++K +D D+DK +K + D RK+ E+M+
Sbjct: 522 RNLGAEKDPEKPHPDKDEEYPEDKDKSDDDRLNDADKAMRKLEADGFGDRYRKIKEKMD- 580
Query: 215 RRRRVQEWQELKRKKEESERENRGDANVEEPKAGRNW 251
++ +L++ E ++ + + ++W
Sbjct: 581 --NLEDDYDDLRKHAIELPKKLDNQSGNGDRDEDKSW 615
|
Length = 616 |
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 5e-05
Identities = 41/210 (19%), Positives = 78/210 (37%), Gaps = 25/210 (11%)
Query: 51 RRRDRDRDRDREKEREEKRERAREKEREREKRDREREDRERERER----------ERERR 100
R R + E +R R R + +RE + E R E R+
Sbjct: 660 RAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIG 719
Query: 101 ERDREREKRERERDRDKEKDRERKSRDREKRRKVESDDSDEDKDRDRKRRR--------- 151
E ++E E+ E+E ++ KE+ E + +++E+ S+ + R
Sbjct: 720 EIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEE 779
Query: 152 ------RHDDDHKERVRERSLSRSNRHRDENDESPREKLVEDDSDKKEKKTREEELEDEQ 205
+ + LS+ + RE + + EK+ E+E+++ Q
Sbjct: 780 ALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQ 839
Query: 206 RKLDEEMEKRRRRVQEWQELKRKKEESERE 235
+ + E+ + +E + L KKEE E E
Sbjct: 840 EQRIDLKEQIKSIEKEIENLNGKKEELEEE 869
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164 |
| >gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase component YidC; Validated | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 5e-05
Identities = 22/138 (15%), Positives = 50/138 (36%), Gaps = 17/138 (12%)
Query: 35 DKHDKEKEKDKHRDRDRRRDRDR----------------DRDREKEREEKRERAREKERE 78
++ +++++ K RR+R R + + + E+ +AR+KE
Sbjct: 292 AQYREKQKEKKAFLWTLRRNRLRMIITPWRAPELHAENAEIKKTRTAEKNEAKARKKEIA 351
Query: 79 REKRDRERE-DRERERERERERRERDREREKRERERDRDKEKDRERKSRDREKRRKVESD 137
+++R ERE +RE +ER R + ++ + + + K
Sbjct: 352 QKRRAAEREINREARQERAAAMARARARRAAVKAKKKGLIDASPNEDTPSENEESKGSPP 411
Query: 138 DSDEDKDRDRKRRRRHDD 155
+ + R +D
Sbjct: 412 QVEATTTAEPNREPSQED 429
|
Length = 429 |
| >gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 6e-05
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 39 KEKEKDKHRDRDRRRDRDRDRDREKEREEKRERAREKEREREKRDREREDRERERERERE 98
K KE+++ R+++ + +R E+ K+ + E E + +RE E +RE E+
Sbjct: 396 KVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKL 455
Query: 99 RRERDREREKRERERDRDKEKDRERKSRDREKRRKVESDDSDEDKDRDRKRRR 151
E +R R RE KDRE ++RDR R +E + ++ K + R+
Sbjct: 456 ESELERFR----REVRDKVRKDREIRARDRRIER-LEKELEEKKKRVEELERK 503
|
Length = 652 |
| >gnl|CDD|165222 PHA02896, PHA02896, A-type inclusion like protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 6e-05
Identities = 38/163 (23%), Positives = 66/163 (40%), Gaps = 13/163 (7%)
Query: 5 HRDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKE 64
H D + +K HR K+ + + + + K K D D D D D K
Sbjct: 421 HGQMDDKYDKRDHRYKNNKYDIYDD--------ESPRYKYKDDDYDDNDDNDDDHIIPK- 471
Query: 65 REEKRERAREKEREREKRDREREDRERERERERERR-ERDREREKRER-ERDRDKEKDRE 122
+ E A++ E E + + + R +D +R +R R+ EKD E
Sbjct: 472 KANNLEDAKDFEDEMMDAIADDDYTPKSIRNRRNGYLLKDEDRYYYDRGHRNLGAEKDPE 531
Query: 123 RKSRDREKRRKVESDDSDEDK--DRDRKRRRRHDDDHKERVRE 163
+ D+++ + D SD+D+ D D+ R+ D +R R+
Sbjct: 532 KPHPDKDEEYPEDKDKSDDDRLNDADKAMRKLEADGFGDRYRK 574
|
Length = 616 |
| >gnl|CDD|217503 pfam03344, Daxx, Daxx Family | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 6e-05
Identities = 42/173 (24%), Positives = 71/173 (41%), Gaps = 16/173 (9%)
Query: 35 DKHDK--EKEKDKHRDRDRRRDRDRDRDREKEREEKRE---RAREKEREREKRDREREDR 89
K D E+E+ K ++R+R+ R D K E A ++ E E + E E+
Sbjct: 393 MKQDDTEEEERRKRQERERQGTSSRSSDPSKASSTSGESPSMASQESEEEESVEEEEEEE 452
Query: 90 ERERERERERRERDREREKRERERDRDKEKDRERKSRDREKRRKVESDDSDEDKDRDRKR 149
E E E E+E E + E E+ E E + D + E + S + D D + +
Sbjct: 453 EEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEG----------SSEGDGDGEEPEED 502
Query: 150 RRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVEDDSDKKEKKTREEELE 202
R + + + S + R ESP+E+ ++ +S E E + E
Sbjct: 503 AERRNSEMAG-ISRMSEGQQPRGSSVQPESPQEEPLQPESMDAESVGEESDEE 554
|
The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 7e-05
Identities = 45/259 (17%), Positives = 103/259 (39%), Gaps = 20/259 (7%)
Query: 11 EKEKEKHREKSRRSEREQSTDSDEDKHD--KEKEKDKHRDRDRRRDRDRDRDREKEREEK 68
E+ K R S ++ E++ + ++ +R + +R+ + +E E
Sbjct: 250 RLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEG 309
Query: 69 RERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRDR 128
E+ E ++ + E+R + E + E+ E + E E+ ++R ++ +R
Sbjct: 310 LRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEER 369
Query: 129 EKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVEDD 188
+ + E + + E + + + ++E S + +E+L E +
Sbjct: 370 LEELEKELEKALERLKQLEEAI--------QELKEELAELSAALEEI-----QEELEELE 416
Query: 189 SDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEE-----SERENRGDANVE 243
+ +E + EELE+E +KL+E++ + + EL E+ E + +
Sbjct: 417 KELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELL 476
Query: 244 EPKAGRNWTLDREDSDDEE 262
E L+ E S ++E
Sbjct: 477 ELYELELEELEEELSREKE 495
|
Length = 908 |
| >gnl|CDD|218177 pfam04615, Utp14, Utp14 protein | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 7e-05
Identities = 51/272 (18%), Positives = 103/272 (37%), Gaps = 18/272 (6%)
Query: 18 REKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEKRERAREKER 77
+ S E E S +ED+ D E + D + + + KE E+ E +
Sbjct: 321 KSVSEEDEDEDSDSEEEDEDDDEDDDDG----ENPWMLRKKLGKLKEGEDDEENSGLLSM 376
Query: 78 EREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRDREKRRKVESD 137
+ +R R+ E + E E RRE + E E E E + +K+ R+ E K
Sbjct: 377 KFMQRAEARKKEENDAEIEELRRELEGEEESDEEENEEPSKKNVGRRKFGPENGEKEAES 436
Query: 138 DSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVEDDSDKKEKKTR 197
+ ++++ + ++ D+ +E + S+K +K+
Sbjct: 437 KKLKKENKNEFKEKKESDE----------EEELEDEEEAKVEKVANKLLKRSEKAQKEEE 486
Query: 198 EEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGDAN----VEEPKAGRNWTL 253
EEEL++E L + ++ + K + + N+ ++ K ++ L
Sbjct: 487 EEELDEENPWLKTTSSVGKSAKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKEKSIDL 546
Query: 254 DREDSDDEEVPQTGKSETDMDADEEPKPSENQ 285
D + D+E+ + + + + DEE Q
Sbjct: 547 DDDLIDEEDSIKLDVDDEEDEDDEELPFLFKQ 578
|
This protein is found to be part of a large ribonucleoprotein complex containing the U3 snoRNA. Depletion of the Utp proteins impedes production of the 18S rRNA, indicating that they are part of the active pre-rRNA processing complex. This large RNP complex has been termed the small subunit (SSU) processome. Length = 728 |
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 1e-04
Identities = 48/211 (22%), Positives = 96/211 (45%), Gaps = 6/211 (2%)
Query: 11 EKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEKRE 70
+E EK +EK + + E + E + K +E K ++ + + + + +E E
Sbjct: 524 AEEYEKLKEKLIKLKGEIKSLKKELE--KLEELKKKLAELEKKLDELEEELAELLKELEE 581
Query: 71 RAREKEREREKRDREREDRERE----RERERERRERDREREKRERERDRDKEKDRERKSR 126
E E E+R +E E E ++ E+E ++E +K E E D+ E+ E + R
Sbjct: 582 LGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKR 641
Query: 127 DREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVE 186
E R+++E + ++ + R + + +E R+ R E + EKL E
Sbjct: 642 LEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKE 701
Query: 187 DDSDKKEKKTREEELEDEQRKLDEEMEKRRR 217
+ ++++ K E+LE +++E EK ++
Sbjct: 702 ELEEREKAKKELEKLEKALERVEELREKVKK 732
|
Length = 880 |
| >gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 1e-04
Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 19/137 (13%)
Query: 70 ERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRDRE 129
+ +E+ER REK E E+R E+ ++ + E+ E E E K E
Sbjct: 395 SKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEEN-------SELKRELEE 447
Query: 130 KRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVEDDS 189
+R++E + + + RR D ++ R R RD E ++L E
Sbjct: 448 LKREIE-----KLESELERFRREVRDKVRKD-------REIRARDRRIERLEKELEEKKK 495
Query: 190 DKKEKKTREEELEDEQR 206
+E + + EL ++
Sbjct: 496 RVEELERKLAELRKMRK 512
|
Length = 652 |
| >gnl|CDD|221821 pfam12871, PRP38_assoc, Pre-mRNA-splicing factor 38-associated hydrophilic C-term | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 1e-04
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 52 RRDRDRDRDREKEREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRER 111
R + D ++E E + E E+ R + +RD +R R R R R R R R++R R
Sbjct: 1 PRVSALEEDLDEEEESEEEEDDEEIRRKAERDVDRGRRSPRRRTRRRSRRRKRSRKRRRR 60
Query: 112 ERDRDKEKDRERKSRDREKRRKVESDDSDEDKDRDRKRRRR 152
RDRD+ + R+R RDR++ + R R RRRR
Sbjct: 61 RRDRDRARYRDRDDRDRDRY----DRSRSRSRSRSRDRRRR 97
|
This domain is a hydrophilic region found at the C-terminus of plant and metazoan pre-mRNA-splicing factor 38 proteins. The function is not known. Length = 97 |
| >gnl|CDD|218177 pfam04615, Utp14, Utp14 protein | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 1e-04
Identities = 51/269 (18%), Positives = 95/269 (35%), Gaps = 32/269 (11%)
Query: 61 REKEREEKRERAREKEREREKRDREREDRERERERER------------------ERRER 102
+EK +EE +E + + E E E ER R ER R +
Sbjct: 237 KEKLKEELKEFEELVKADPEAALEELEKLERRRAEERMTLKHKNTSKWAKSMLKTGRAKY 296
Query: 103 DREREKRERERDRDKEKDRERK--SRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKER 160
D E K E+ R E+ R + E+ +SD +ED+D D D ++
Sbjct: 297 DEEARKALEEQLRQGEELRRKIEGKSVSEEDEDEDSDSEEEDEDDDEDDD---DGENPWM 353
Query: 161 VRERSLSRSNRHRDENDESPREKLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQ 220
+R+ + + ++ D+ L+ ++ + ++EE + E +L E+E +
Sbjct: 354 LRK----KLGKLKEGEDDEENSGLLSMKFMQRAEARKKEENDAEIEELRRELEGEEESDE 409
Query: 221 EWQELKRKKEESER-----ENRGDANVEEPKAGRNWTLDREDSDDEEVPQTGKSETDMDA 275
E E KK R +A ++ K + DEE + E ++
Sbjct: 410 EENEEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEK 469
Query: 276 DEEPKPSENQVGDAMLVDSDGGSAAPALQ 304
++ + + P L+
Sbjct: 470 VANKLLKRSEKAQKEEEEEELDEENPWLK 498
|
This protein is found to be part of a large ribonucleoprotein complex containing the U3 snoRNA. Depletion of the Utp proteins impedes production of the 18S rRNA, indicating that they are part of the active pre-rRNA processing complex. This large RNP complex has been termed the small subunit (SSU) processome. Length = 728 |
| >gnl|CDD|146486 pfam03879, Cgr1, Cgr1 family | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 1e-04
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 62 EKEREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDR 121
EK E++ E+ K RE+E +D + +R+R + +ERR E+E+ E+ + K
Sbjct: 31 EKRMEKRLEQQAIKAREKELKDEKEAERQRRIQAIKERRAAKEEKERYEKMAAKMHAKKV 90
Query: 122 ERKSRDREKRRKV 134
ER R REKR K+
Sbjct: 91 ERLKR-REKRNKL 102
|
Members of this family are coiled-coil proteins that are involved in pre-rRNA processing. Length = 105 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 2e-04
Identities = 51/243 (20%), Positives = 98/243 (40%), Gaps = 20/243 (8%)
Query: 6 RDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKER 65
+ R E E+E + E ++ + E++ + +E + ++ + ++E
Sbjct: 736 QSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEEL 795
Query: 66 EEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKS 125
EE E E ER + +RE E E+ RER + E E+ E E + +EK E +
Sbjct: 796 EELEEELEEAERRLDALERELESLEQRRERLEQ------EIEELEEEIEELEEKLDELEE 849
Query: 126 RDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLV 185
E +++E + ++ K + E +E +E +L
Sbjct: 850 ELEELEKELEELKEELEELEAEKEELEDELKELEEEKEE--------LEEELRELESELA 901
Query: 186 EDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEW------QELKRKKEESERENRGD 239
E + ++ + R EELE + +L+ E+ + ++E EL+R+ E E E
Sbjct: 902 ELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEAL 961
Query: 240 ANV 242
V
Sbjct: 962 GPV 964
|
Length = 1163 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-04
Identities = 46/215 (21%), Positives = 97/215 (45%), Gaps = 21/215 (9%)
Query: 45 KHRDRDRRRDRDRDRDREKEREEKRERAREKEREREKRDREREDRERERERERER----- 99
K R + R +R + + E+ E EK+ E+ +R E+ +R +E + E
Sbjct: 171 KERKEEAERKLERTEENLERLEDLLEE-LEKQLEKLERQAEKAERYQELKAELRELELAL 229
Query: 100 -----RERDREREKRERERDRDKEKDRERKSRDREKRRKVESDDSDEDKDRDRKRRRRHD 154
+E +E E+ E E R +E+ E + E +++E S+ ++ R+ + +
Sbjct: 230 LLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEE 289
Query: 155 DDHKERVRERSLSRSNRHRDENDESPREKLVEDDSDKKEKKTREEELEDEQRKLDEEMEK 214
+ E + R+ +E +++ +E + R EEL+++ L EE+E+
Sbjct: 290 LLELKEEIEELEGEISLLRERLEEL--------ENELEELEERLEELKEKIEALKEELEE 341
Query: 215 RRRRVQEWQELK--RKKEESERENRGDANVEEPKA 247
R ++E ++L ++ + E E + A +EE +
Sbjct: 342 RETLLEELEQLLAELEEAKEELEEKLSALLEELEE 376
|
Length = 1163 |
| >gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 2e-04
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 3/103 (2%)
Query: 52 RRDRDRDRDREKEREEKRERAREKEREREKRDREREDRERERER---ERERRERDREREK 108
+ ++ +R REKE E+ ER E+ + E E E +RE E RE EK
Sbjct: 395 SKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEK 454
Query: 109 RERERDRDKEKDRERKSRDREKRRKVESDDSDEDKDRDRKRRR 151
E E +R + + R++ +DRE R + + E + ++K+R
Sbjct: 455 LESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRV 497
|
Length = 652 |
| >gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter subunit G; Reviewed | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 2e-04
Identities = 30/98 (30%), Positives = 55/98 (56%), Gaps = 2/98 (2%)
Query: 53 RDRDRDRDREKEREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERE 112
R RD+ R +K+ +K++ ++ + EK +ERE+ E E ER + D ++ E+E
Sbjct: 102 RIRDQLRSVKKDDIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQE 161
Query: 113 RDRDKEKDRERKSRDREKRRKVESDDSDEDKDRDRKRR 150
R+R+ E+ E +S D E +E D+S+ + D D+ +
Sbjct: 162 RERE-EQTIEEQSDDSE-HEIIEQDESETESDDDKTEK 197
|
Length = 197 |
| >gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 2e-04
Identities = 38/214 (17%), Positives = 58/214 (27%), Gaps = 2/214 (0%)
Query: 44 DKHRDRDRRRDRDRDRDREKEREEKRERAREKEREREKRDREREDRERERERERERRERD 103
+ R R+ D + A + E E++ E R+
Sbjct: 763 RELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAESAERELARAARKAAAAAAA 822
Query: 104 REREKRERERDRDKEKDRERKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRE 163
++ +RE ERD ++ R RH R
Sbjct: 823 WKQARRELERDAADLDLPTDPDALEAVGLALKRFGDHLHTLEVAVRELRHAATRAAEQRA 882
Query: 164 RSLSRSNRHRDENDESPREKLVEDDSDKKEKKTREEEL-EDEQRKLDEEMEKRRRRVQEW 222
R +R+ E E E E + +T EE + E R
Sbjct: 883 R-AARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGAMVDEIRARLAETRAALASGG 941
Query: 223 QELKRKKEESERENRGDANVEEPKAGRNWTLDRE 256
+EL R E EE +A + TLD
Sbjct: 942 RELPRLAEALATAEEARGRAEEKRAEADATLDER 975
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length [Hypothetical proteins, Conserved]. Length = 1353 |
| >gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 20/67 (29%), Positives = 40/67 (59%)
Query: 67 EKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSR 126
++RA+ +E++ ++ RE E+ ERE ++ E + +E+ E E +R+K+K+ E +
Sbjct: 4 GAKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKE 63
Query: 127 DREKRRK 133
E+ RK
Sbjct: 64 REEQARK 70
|
This is a family of proteins of approximately 300 residues, found in plants and vertebrates. They contain a highly conserved DDRGK motif. Length = 189 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 2e-04
Identities = 29/217 (13%), Positives = 91/217 (41%), Gaps = 8/217 (3%)
Query: 23 RSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEKRERAREKEREREKR 82
R+ R + + +K E E++ R ++ ++R+ R++ ++ A+ ++
Sbjct: 84 RALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLT 143
Query: 83 DREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRDREKRRKVESDDSDED 142
+ ++ + R + +RR+ + + + + + + + + KS+ + + + E
Sbjct: 144 KQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSA---QIEQ 200
Query: 143 KDRDRKRRRRHDDDHKERVRERSLSRSNR-----HRDENDESPREKLVEDDSDKKEKKTR 197
+ ++ R E + R+ + RD +++ +E++ +
Sbjct: 201 EAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQ 260
Query: 198 EEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESER 234
+ LE Q +L++E+ + Q + L+++ ++R
Sbjct: 261 LQRLETAQARLEQEVAQLEAYYQAYVRLRQQAAATQR 297
|
Length = 499 |
| >gnl|CDD|234478 TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA ligase-associated | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 2e-04
Identities = 81/357 (22%), Positives = 144/357 (40%), Gaps = 41/357 (11%)
Query: 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP 548
P P Q + + GR + +A TGSGKTLA LP L I P G L + P
Sbjct: 13 TPRPFQLEMWAAALEGRSGLLIAPTGSGKTLAGFLPSL--IDLAGPEKPKKGLHTLYITP 70
Query: 549 TRELVQQIHSDIRKFAKVMG--VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILC 606
R L I +++ + +G +R G + +++ + K+ +I++ TP + +L
Sbjct: 71 LRALAVDIARNLQAPIEELGLPIRVETRTGDTSSSERARQRKKPPDILLTTPESLALLLS 130
Query: 607 TSGGK--ITNLRRVTYLVMDEADRMFDMG------FEPQITRIVQNIRPDRQTVLFSATF 658
+LR V V+DE + G E + R+ + + P + SAT
Sbjct: 131 YPDAARLFKDLRCV---VVDEWHEL--AGSKRGDQLELALARL-RRLAPGLRRWGLSATI 184
Query: 659 PRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVR----PESDRF-------LRLL-E 706
E AR+VL + + +V + + + V +RF LR L E
Sbjct: 185 GNLEE--ARRVL---LGVGGAPAVLVRGKLPKAIPVISLLPESEERFPWAGHLGLRALPE 239
Query: 707 LLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSL-----HGAKDQTDRESTISDFK 761
+ E + L+F +++ + + F+ L + P +L HG+ D+ R +
Sbjct: 240 VYAEIDQARTTLVFTNTRSQAELWFQALWEA-NPEFALPIALHHGSLDREQRRWVEAAMA 298
Query: 762 SNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFI 818
+ ++ TS G+D ++LVI +P + R GR+ + +
Sbjct: 299 AGRLRAVVCTSSLDLGVDFGPVDLVIQIGSPKGVARLLQRAGRSNHRPGEPSRALLV 355
|
Members of this protein family are DEAD/DEAH box helicases found associated with a bacterial ATP-dependent DNA ligase, part of a four-gene system that occurs in about 12 % of prokaryotic reference genomes. The actual motif in this family is DE[VILW]H. Length = 803 |
| >gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682) | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 49 RDRRRDRDRDRDREKEREEKRERAREKEREREKRDREREDRERER---ERERERRER 102
R+ ++ E+ +EE +E+ EK++E + + E +R E+ER+++ R
Sbjct: 265 REEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQAR 321
|
The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322 |
| >gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 2e-04
Identities = 42/252 (16%), Positives = 89/252 (35%), Gaps = 30/252 (11%)
Query: 51 RRRDRDRDRDREKEREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRE 110
+ ++ E EE R ++ + ++ E + + E ++ D + EK +
Sbjct: 183 MKAAKNGPAAFGDEDEETEGEKGGGGRGKDLKIKDLEGDDEDDGDESDKGGEDGDEEKSK 242
Query: 111 RERDRDKEKDRERKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSN 170
+++ + + +K D +K+ K DD ++ D D ++D+ S+
Sbjct: 243 KKKKK---LAKNKKKLDDDKKGKRGGDDDADEYDSDDGDDEGREEDYI----------SD 289
Query: 171 RHRDENDESPREK-LVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKK 229
ND RE L + K E + E+ E E+ K +EE ++ + + +K
Sbjct: 290 SSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKN 349
Query: 230 EESERENRGDANVEEPKAGRNWTLDREDSDDEEVPQTGKSETDMDADEEPKPSENQVGDA 289
+ ++ +DSDD ++ ++ E V
Sbjct: 350 GLDKDDSD----------------SGDDSDDSDIDGEDSVSLVTAKKQKEPKKEEPVDSN 393
Query: 290 MLVDSDGGSAAP 301
+ G A P
Sbjct: 394 PSSPGNSGPARP 405
|
Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II. Length = 528 |
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 3e-04
Identities = 72/300 (24%), Positives = 118/300 (39%), Gaps = 34/300 (11%)
Query: 11 EKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDR------------DRD 58
E E E RE +ERE+ ++E + +E+ ++ +RD R
Sbjct: 257 EAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARR 316
Query: 59 RDREKEREEKRERAREK----EREREKRDREREDRERERERERERRERDREREKRERERD 114
+ E EE R+R E + E+ + RED + ER E RE E E E
Sbjct: 317 EELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAR 376
Query: 115 RDKEKDRERKSRDREKRRKVESDDSDEDKDRDRKRRRRHD-DDHKERVRER--SLSRSNR 171
E RE E+ ++ D D + + ++ +RER L + R
Sbjct: 377 EAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLR 436
Query: 172 HRDENDESPREKL-----------VEDDSDK---KEKKTREEELEDEQRKLDEEMEKRRR 217
E E L VE +E + R EELE E L+EE+E+
Sbjct: 437 TARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEE 496
Query: 218 RVQEWQELKRKKEESERENRGDANVEEPKAGRNWTLDREDSDDEEVPQTGKSETDMDADE 277
R++ ++L ++ ER ++EE A R T++ E + E + +E + +A+E
Sbjct: 497 RLERAEDLVEAEDRIERLEERREDLEELIAERRETIE-EKRERAEELRERAAELEAEAEE 555
|
Length = 880 |
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 3e-04
Identities = 46/250 (18%), Positives = 105/250 (42%), Gaps = 22/250 (8%)
Query: 9 DREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEK 68
+ E++ K E E S + + + ++ R R R+ ++ + +
Sbjct: 769 ELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQ-KLNRLTLE 827
Query: 69 RERAREKEREREKRDREREDRERERERE--------RERRERDREREKRERERDRDKEKD 120
+E ++ +E +++ + +++ + E+E E E E E R+ +
Sbjct: 828 KEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDL 887
Query: 121 RERKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESP 180
++ + + R++E + + ++KR+R + K E LS + E++E P
Sbjct: 888 KKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIP 947
Query: 181 REKLVEDD-SDKKEKKTRE------------EELEDEQRKLDEEMEKRRRRVQEWQELKR 227
E+L +D + ++ E +E E+ ++LDE EKR + +E + +
Sbjct: 948 EEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILE 1007
Query: 228 KKEESERENR 237
+ EE E++ R
Sbjct: 1008 RIEEYEKKKR 1017
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164 |
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 3e-04
Identities = 38/231 (16%), Positives = 96/231 (41%), Gaps = 16/231 (6%)
Query: 8 RDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREE 67
E + EK + +E ++ +E E+ + + + ++ +E EE
Sbjct: 213 SSELPELREELEKLEKEVKEL------EELKEEIEELEKELESLEGSKRKLEEKIRELEE 266
Query: 68 KRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRD 127
+ E +++ E E++ +E ++ + + E + E E RE ++ + E +
Sbjct: 267 RIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGI 326
Query: 128 REKRRKVESDDS-----DEDKDRDRKRRRRHDDDHKERVRERSL-SRSNRHRDENDESPR 181
E+ +++E + + KR ++ H+ ++ R +
Sbjct: 327 EERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTP 386
Query: 182 EKLVED-DSDKKEKKTREEELE---DEQRKLDEEMEKRRRRVQEWQELKRK 228
EKL ++ + +K K+ EEE+ +L +E+++ ++ ++E ++ K K
Sbjct: 387 EKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGK 437
|
Length = 880 |
| >gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 3e-04
Identities = 51/262 (19%), Positives = 100/262 (38%), Gaps = 25/262 (9%)
Query: 9 DREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEK 68
E E+ E E + + + K + + + R+ E E E K
Sbjct: 646 GEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEG---EGEIEAK 702
Query: 69 RERAR-EKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRD 127
+ E E E + + E E E E E E E E E E E + + + + E +
Sbjct: 703 EADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVED-EGEGEAEGKHEVETEGDR 761
Query: 128 REKRRKVESDDSDEDKDRDRKRRRRHDDDHK--ERVRERSLSRSNRHRDENDESPREKLV 185
+E + E++ ++ + + + + D + K E + E DE +
Sbjct: 762 KETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSET 821
Query: 186 EDDSDKKEKKTREEEL--------EDEQRKLD----------EEMEKRRRRVQEWQELKR 227
+ D + + +T E+EL + +++ +D EE E+ +E +E +
Sbjct: 822 QADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEE 881
Query: 228 KKEESERENRGDANVEEPKAGR 249
++EE E EN ++E P+ +
Sbjct: 882 EEEEEEEENEEPLSLEWPETRQ 903
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096 |
| >gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (105), Expect = 3e-04
Identities = 35/94 (37%), Positives = 54/94 (57%), Gaps = 4/94 (4%)
Query: 23 RSEREQSTDSDEDKHDKEKE-KDKHRDRDRRRDRDRDRDREKEREEKRERAR-EKER-ER 79
+ E++ E+ H K E K + R R +R+ E+ER E+ ER R E+ER ER
Sbjct: 432 KDHAERARIEKENAHRKALEMKILEKKRIERLEREERERLERERMERIERERLERERLER 491
Query: 80 EKRDREREDRERERERERERRERDREREKRERER 113
E+ +R+R +R+R ERER +R ER++ E+ R
Sbjct: 492 ERLERDRLERDRLDRLERERVDR-LERDRLEKAR 524
|
Length = 1021 |
| >gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family | Back alignment and domain information |
|---|
Score = 44.7 bits (105), Expect = 3e-04
Identities = 25/48 (52%), Positives = 34/48 (70%), Gaps = 3/48 (6%)
Query: 55 RDRDRDREKEREEKRERAREKEREREKRDREREDRERERERERERRER 102
+ R+ EK + E ++ARE EREREK ++E+E RERERERE ER +
Sbjct: 579 KKREEAVEKAKREAEQKARE-EREREK-EKEKE-REREREREAERAAK 623
|
Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979 |
| >gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 3e-04
Identities = 20/74 (27%), Positives = 46/74 (62%)
Query: 57 RDRDREKEREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRD 116
+ R + +E++ +R++ +E ERE+R + E RE ER+ E E E ++++ E ++R+
Sbjct: 6 KKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKERE 65
Query: 117 KEKDRERKSRDREK 130
++ +E++ ++ K
Sbjct: 66 EQARKEQEEYEKLK 79
|
This is a family of proteins of approximately 300 residues, found in plants and vertebrates. They contain a highly conserved DDRGK motif. Length = 189 |
| >gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682) | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 3e-04
Identities = 17/60 (28%), Positives = 39/60 (65%)
Query: 50 DRRRDRDRDRDREKEREEKRERAREKEREREKRDREREDRERERERERERRERDREREKR 109
D+ R+ + ++ + EE++E A+EK+ E++K +RE + + E +R+ E++R+++ R
Sbjct: 262 DKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQAR 321
|
The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322 |
| >gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 3e-04
Identities = 37/254 (14%), Positives = 80/254 (31%), Gaps = 32/254 (12%)
Query: 6 RDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKER 65
D + ++ K EK + +E Q + S + + R + ++
Sbjct: 34 EDLEEGEKGLKELEKLKVAEVAQISLSSLLSEVLDYLRSVKGLEGRLFI---LPEEVEKL 90
Query: 66 EEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDR--------DK 117
E + + E + EK E E+ R+ E ER + + + + D
Sbjct: 91 EAELKSLEEVIKPAEKFSSEVEELTRKLE-ERLSELDEELEDLEDLLEELEPLAYLDFDL 149
Query: 118 EKDRERK-----------SRDREKRRKVESDDSDEDKDRDRKRRRR--HDDDHKERVRE- 163
R K + +E + + ++ + H + ++V +
Sbjct: 150 SLLRGLKFLLVRLGLVRREKLEALVGVIEDEVALYGENVEASVVIVVAHGAEDLDKVSKI 209
Query: 164 -RSLSRSNRHRDENDESPREKLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEW 222
L E D P E + ++ ++ELE + +L+ EK +
Sbjct: 210 LNELGFELYEVPEFDGGPSELI---SELEEVIAEIQDELESLRSELEALAEKIAEELLAV 266
Query: 223 QELKRKKEESEREN 236
+E + E +
Sbjct: 267 RE--ILEIEKALGD 278
|
Length = 660 |
| >gnl|CDD|227615 COG5296, COG5296, Transcription factor involved in TATA site selection and in elongation by RNA polymerase II [Transcription] | Back alignment and domain information |
|---|
Score = 44.3 bits (104), Expect = 3e-04
Identities = 39/194 (20%), Positives = 81/194 (41%), Gaps = 10/194 (5%)
Query: 24 SEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEKRERAREKEREREKRD 83
S R+++ D +D ++D + + D + + + + E E+ + R + + +++ D
Sbjct: 21 SNRKRAHDDLDDVLSSSSDEDNNENVDYAEESGGEGNEKSEEEKFKNPYRLEGKFKDEAD 80
Query: 84 REREDRERERERERERRERDREREK-RERERDRDKEKDRERKSR----DREKRRKVESDD 138
R + E ERE ER+ E K ER + + + R S R R + +
Sbjct: 81 RAKIMAMTEIERESILFEREEEISKLMERRELAIRMEQQHRSSGCTDTRRSTRYEPLTSA 140
Query: 139 SDEDKDR---DRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVEDDSDKKEKK 195
++E K + +K R R + + ER E + + +E+++ +E+ S +E
Sbjct: 141 AEEKKKKLLELKKTREREERLYSERHIELQRFKDYKELEESEQGLQEEY--TPSYAEEAV 198
Query: 196 TREEELEDEQRKLD 209
+D D
Sbjct: 199 EDISRTDDFAELYD 212
|
Length = 521 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 4e-04
Identities = 33/151 (21%), Positives = 62/151 (41%), Gaps = 7/151 (4%)
Query: 4 SHRDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDR--DRDRDR 61
S + E+ E RE+ E E + E +++ E+ K + + R +R +R D
Sbjct: 368 SALLEELEELFEALREELAELEAELA----EIRNELEELKREIESLEERLERLSERLEDL 423
Query: 62 EKEREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDR 121
++E +E E + E E+ + E E+ E + E R+R + + ERE E + + + +
Sbjct: 424 KEELKELEAELEELQTELEELNEELEELEEQLEELRDRLK-ELERELAELQEELQRLEKE 482
Query: 122 ERKSRDREKRRKVESDDSDEDKDRDRKRRRR 152
R R + E S +
Sbjct: 483 LSSLEARLDRLEAEQRASQGVRAVLEALESG 513
|
Length = 1163 |
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 4e-04
Identities = 33/203 (16%), Positives = 72/203 (35%), Gaps = 5/203 (2%)
Query: 9 DREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEK 68
+ EKE ++ K R E+ + E +K ++ ++ ++ + +R K +EE+
Sbjct: 340 ELEKELKELEIK--REAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEE 397
Query: 69 RERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRDR 128
E E+E+E + E E + E++ + E + E + K + + +
Sbjct: 398 LELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKEE---L 454
Query: 129 EKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVEDD 188
EK+ D E K + + E++ L + + + RE L
Sbjct: 455 EKQALKLLKDKLELKKSEDLLKETKLVKLLEQLELLLLRQKLEEASQKESKAREGLAVLL 514
Query: 189 SDKKEKKTREEELEDEQRKLDEE 211
+ K+ +
Sbjct: 515 ALIKDGVGLRIISAAGRGGDLGV 537
|
This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162 |
| >gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27 | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 4e-04
Identities = 30/140 (21%), Positives = 57/140 (40%), Gaps = 10/140 (7%)
Query: 14 KEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRR------DRDRDRDREKEREE 67
K K +K++ + +E +T+ E K + K + + +EK+
Sbjct: 177 KVKSAKKTQDTSKETTTEKTEGKTSVKAASLKRNPPKKSNIMSSFFKKKTKEKKEKKEAS 236
Query: 68 KRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRD 127
+ E E E KRD ED E E + E E + D E++ E K ++
Sbjct: 237 ESTVKEESEEESGKRDVILED---ESAEPTGLDEDEDEDEPKPSGERSDSEEETEEKEKE 293
Query: 128 REKR-RKVESDDSDEDKDRD 146
+ KR +K+ D+ ++++
Sbjct: 294 KRKRLKKMMEDEDEDEEMEI 313
|
This protein forms the C subunit of DNA polymerase delta. It carries the essential residues for binding to the Pol1 subunit of polymerase alpha, from residues 293-332, which are characterized by the motif D--G--VT, referred to as the DPIM motif. The first 160 residues of the protein form the minimal domain for binding to the B subunit, Cdc1, of polymerase delta, the final 10 C-terminal residues, 362-372, being the DNA sliding clamp, PCNA, binding motif. Length = 427 |
| >gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523) | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 4e-04
Identities = 31/127 (24%), Positives = 62/127 (48%), Gaps = 3/127 (2%)
Query: 7 DRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREK-ER 65
+R R + +E+ + ++++EQ +D+ +++ + + + R+ + E R
Sbjct: 85 ERARVEAEERRKTLQEQTQQEQQRAQYQDELARKRYQKELEQQRRQNEELLKMQEESVLR 144
Query: 66 EEKRERAREKEREREKRDREREDRERERERERER-RERDREREKRERE-RDRDKEKDRER 123
+E RA E+E +R+ E+ E ERE R + R R K ERE D ++E + +
Sbjct: 145 QEAMRRATEEEILEMRRETIEEEAELERENIRAKIEAEARGRAKEERENEDINREMLKLK 204
Query: 124 KSRDREK 130
+ +RE
Sbjct: 205 ANEERET 211
|
This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with pfam00004. This domain has a conserved LER sequence motif. Length = 276 |
| >gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 4e-04
Identities = 50/274 (18%), Positives = 97/274 (35%), Gaps = 26/274 (9%)
Query: 6 RDRDREKEKEKHR-EKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKE 64
+ E K + + +S + D D + E + + D + + +
Sbjct: 75 NQKYVEFLINKEHIRVLAKLQDSESHEDGSDGSDMDSEDSADDEEEEEEDESLEDEMIDD 134
Query: 65 REEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDK------- 117
+E + + D E ED E ++ E E E E+ RE+ DK
Sbjct: 135 EDEADLFNESESSLEDLSDDETEDDEEKKMEEEEAGEEKESVEQATREKKFDKSGVDDKF 194
Query: 118 ----EKDRERKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHR 173
E + ++ + E+ + +D ED +D + D+D
Sbjct: 195 FKLDEMNEFLEATEAEEEAALGDEDDFEDYFQDDSEDGKDDEDFGSG------------E 242
Query: 174 DENDESPREKLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESE 233
DE D+ ED D KEK +++ +D + + DE ++ ++ E +++E +
Sbjct: 243 DEEDDEEGNIEYEDFFDPKEKDKKKDAGDDAELEDDEPDKEAVKK--EADSKPEEEDEED 300
Query: 234 RENRGDANVEEPKAGRNWTLDREDSDDEEVPQTG 267
E D + EEP + ++ E V
Sbjct: 301 DEQEDDQDEEEPPEAAMDKVKLDEPVLEGVDLES 334
|
This family includes proteins related to Mpp10 (M phase phosphoprotein 10). The U3 small nucleolar ribonucleoprotein (snoRNP) is required for three cleavage events that generate the mature 18S rRNA from the pre-rRNA. In Saccharomyces cerevisiae, depletion of Mpp10, a U3 snoRNP-specific protein, halts 18S rRNA production and impairs cleavage at the three U3 snoRNP-dependent sites. Length = 613 |
| >gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR) | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 4e-04
Identities = 53/251 (21%), Positives = 103/251 (41%), Gaps = 15/251 (5%)
Query: 81 KRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRDR-----EKRRKVE 135
K + ER R+R + +RE+++R++E+ R R E D + E+ +
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHHSLGTESDEDIAPAQMVDIVTEEMPENA 142
Query: 136 SDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREK---LVEDDSDKK 192
++DKD + R D K L E +SP + VE S K
Sbjct: 143 LPSDEDDKDPNDPYRALDIDLDKPLADSEKLPVQKHRNAETSKSPEKGDVPAVEKKSKKP 202
Query: 193 EKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKK----EESERENRGDANVEEPKAG 248
+KK ++E+ ++ + +E+E + + + E E + P +
Sbjct: 203 KKKEKKEKEKERDKDKKKEVEGFKSLLLALDDSPASAASVAEADEASLANTVSGTAPDSE 262
Query: 249 RNWTLDREDSDDEEVPQTGKSETDMDADEEPKPSENQVGDAMLVDSDGGSAAPALQIGAA 308
+ D E + ++ P+ K + + +E+ K ++ SDGG+ P +Q GA
Sbjct: 263 PDEPKDAEAEETKKSPKHKKKKQRKEKEEKKKKKKHH--HHRCHHSDGGAEQP-VQNGAV 319
Query: 309 EDEDIDPLDAF 319
E+E + P+ ++
Sbjct: 320 EEEPLPPMSSY 330
|
This family consists of several bovine specific leukaemia virus receptors which are thought to function as transmembrane proteins, although their exact function is unknown. Length = 561 |
| >gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 4e-04
Identities = 35/217 (16%), Positives = 70/217 (32%), Gaps = 28/217 (12%)
Query: 75 KEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRDREKRRKV 134
+ + +D E + E E+E E E +R+ + E E ++ ++R+ +
Sbjct: 214 RRIAQVLQDAEIAENEAEKETEIAIAEANRDAKLVELEVEQQPAGKTAEQTREVKIILAE 273
Query: 135 ESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSN-----RHRDENDESPREKLVEDDS 189
+ K RR + + ++ +H + RE V
Sbjct: 274 TEAEVAAWKAE---TRREAEQAEILAEQAIQEEKAQAEQEVQHAKALEA--REMRVGLIE 328
Query: 190 DKKEK----KTREEELEDEQRKLDEEMEKRRR-----RVQEWQELKRKKEESERENRGDA 240
+KE + R + QR+ EE + Q ++ +E E E A
Sbjct: 329 RQKETELEPQERSYFINAAQRQAQEEAKAAANIAEAIGAQAEAAVETARETEEAERAEQA 388
Query: 241 NVEEPKAGRNWTLDREDSDDEEVPQTGKSETDMDADE 277
+ E ++ E+V ++E E
Sbjct: 389 ALVAA---------AEAAEQEQVEIAVRAEAAKAEAE 416
|
Length = 548 |
| >gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 4e-04
Identities = 27/115 (23%), Positives = 53/115 (46%), Gaps = 6/115 (5%)
Query: 10 REKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEKR 69
+KE + E + +S +++ ++ D+E E + R + R+ D D +
Sbjct: 72 SKKENKLAIEDADKSTNLDASNEGDEDDDEEDEIKRKRIEEDARNSDADDSDSSSDSD-- 129
Query: 70 ERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERK 124
+ + + D E E RE E+ ++ER E+E+ E E+ ++EK RE +
Sbjct: 130 ----SSDDDSDDDDSEDETAALLRELEKIKKERAEEKEREEEEKAAEEEKAREEE 180
|
This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing. Length = 241 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 5e-04
Identities = 36/189 (19%), Positives = 75/189 (39%), Gaps = 4/189 (2%)
Query: 50 DRRRDRDRDRDREKEREEKRERAREKEREREKRDRE---REDRERERERERERRERDRER 106
D + +R + + EK ER +E + E + + E E E + E
Sbjct: 193 DILNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAE 252
Query: 107 EKRERERDRDKEKDRERKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSL 166
E+ E +E + E+ R + ++E + + K+ + ++++ L
Sbjct: 253 EELEELTAELQELE-EKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERL 311
Query: 167 SRSNRHRDENDESPREKLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELK 226
+ R +E + E + D +E EE+LE+ + +L+ + E +EL+
Sbjct: 312 ANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELE 371
Query: 227 RKKEESERE 235
+ EE E +
Sbjct: 372 SRLEELEEQ 380
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 5e-04
Identities = 39/249 (15%), Positives = 95/249 (38%), Gaps = 16/249 (6%)
Query: 3 HSHRDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDRE 62
++ E+ K+ E + ++ +E E+ + + R+ + +
Sbjct: 374 EKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEI 433
Query: 63 KEREEKRERAREKEREREK-RDREREDRERERERERERRERDREREKRERERDRDKEKDR 121
K+ EE+ + KE + + +E E + E + E E ++
Sbjct: 434 KKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEELEEELSRE 493
Query: 122 ERKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPR 181
+ ++ RE+ ++E + + +++ E +L + E E+
Sbjct: 494 KEEAELREEIEELEKELRELEEELIELL-----------ELEEALKEELEEKLEKLENLL 542
Query: 182 EKLVEDDSDKKEKKTREE--ELEDEQRKLDEEMEKRR--RRVQEWQELKRKKEESERENR 237
E+L E + ++ +EE +LED ++L E +E+ R R +E E R++ + ++
Sbjct: 543 EELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKL 602
Query: 238 GDANVEEPK 246
+ +
Sbjct: 603 KELEERLSQ 611
|
Length = 908 |
| >gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 5e-04
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 12/94 (12%)
Query: 7 DRDREKEKE-KHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKER 65
D + E + E ++ + R E + D + D+ D+E K D D D D + +
Sbjct: 105 DIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSK-------SEDDEDDDDDDDDDD 157
Query: 66 EEKRERAREKEREREKRDREREDRERERERERER 99
RER+ E+ R R RE E++ E E +
Sbjct: 158 IATRERSLERRRRR----REWEEKRAELEFYYYQ 187
|
CDC45 is an essential gene required for initiation of DNA replication in S. cerevisiae, forming a complex with MCM5/CDC46. Homologues of CDC45 have been identified in human, mouse and smut fungus among others. Length = 583 |
| >gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 5e-04
Identities = 39/186 (20%), Positives = 81/186 (43%), Gaps = 32/186 (17%)
Query: 52 RRDRDRDRDREKEREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRER 111
++ + ++ E+ +E ++ A EK +E RER ++R+ RRE RE +RE
Sbjct: 26 KKRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARRE--REELQREE 83
Query: 112 ERDRDKEKDRERKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNR 171
ER KE+ + + ++ D +++ + RE++LS
Sbjct: 84 ERLVQKEEQLDAR-----------AEKLDNLENQLEE-------------REKALSAREL 119
Query: 172 HRDENDESPREKLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEE 231
+E ++ +L E + R+ L+ +L+EE +R ++++E E
Sbjct: 120 ELEELEKQLDNELYRVAGLTPE-QARKLLLKLLDAELEEEKAQRVKKIEE-----EADLE 173
Query: 232 SERENR 237
+ER+ +
Sbjct: 174 AERKAQ 179
|
Length = 508 |
| >gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 5e-04
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 46 HRDRD-RRRDRDRDRDREKEREEKRERAREKEREREKRDREREDRERERERERERRERDR 104
+RD+ R D + R+ ++ +E++ER EKE+E K ++E+RE+ E ++
Sbjct: 4 YRDKSGRIIDIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEEL------EK 57
Query: 105 EREKRERERDRDKEKDRERKSRDRE 129
+ K D++ D E K ++R
Sbjct: 58 AKNKPLARYADDEDYDEELKEQERW 82
|
This entry is characterized by proteins with alternating conserved and low-complexity regions. Bud13 together with Snu17p and a newly identified factor, Pml1p/Ylr016c, form a novel trimeric complex. called The RES complex, pre-mRNA retention and splicing complex. Subunits of this complex are not essential for viability of yeasts but they are required for efficient splicing in vitro and in vivo. Furthermore, inactivation of this complex causes pre-mRNA leakage from the nucleus. Bud13 contains a unique, phylogenetically conserved C-terminal region of unknown function. Length = 141 |
| >gnl|CDD|152107 pfam11671, Apis_Csd, Complementary sex determiner protein | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 5e-04
Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 71 RAREKEREREKRDRE-REDRERERERERERRERDREREKR 109
R+RE+E++ K + RE RE RER R+R ER+R RE +
Sbjct: 8 RSREREQKSYKNENSYREYRETSRERSRDRTERERSREHK 47
|
This family of proteins represents the complementary sex determiner in the honeybee. In the honeybee, the mechanism of sex determination depends on the csd gene which produces an SR-type protein. Males are homozygous while females are homozygous for the csd gene. Heterozygosity generates an active protein which initiates female development. Length = 146 |
| >gnl|CDD|219256 pfam06991, Prp19_bind, Splicing factor, Prp19-binding domain | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 5e-04
Identities = 45/188 (23%), Positives = 84/188 (44%), Gaps = 20/188 (10%)
Query: 11 EKEKEKHREKSRRSEREQSTDSDEDKHDKEKEK-DKHRDRDRRRDRDRDRDREKEREEKR 69
E+E E E+ SE E+ TDS++D + K + +DR ++R+R+ +EK EE+
Sbjct: 8 EEEDESGEEEEEESEEEEETDSEDDMEPRLKPVFTRKKDRITIQEREREAAKEKALEEEA 67
Query: 70 ERAREKEREREKRDREREDRERERERERERRER--------DREREKRERE--------- 112
+R E+ + + E E ++ ++R D E E+ E E
Sbjct: 68 KRKAEERKRETLKIVEEEVKKELELKKRNTLLEANIDDVDTDDENEEEEYEAWKLRELKR 127
Query: 113 --RDRDKEKDRERKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSN 170
RDR++ ++ ER+ + EK R + ++ + ++ K K + ++ R
Sbjct: 128 IKRDREEREEMEREKAEIEKMRNMTEEERRAELRKNPKVSTNKAKKGKYKFLQKYYHRGA 187
Query: 171 RHRDENDE 178
+DE DE
Sbjct: 188 FFQDEEDE 195
|
This family represents the C-terminus (approximately 300 residues) of proteins that are involved as binding partners for Prp19 as part of the nuclear pore complex. The family in Drosophila is necessary for pre-mRNA splicing, and the human protein has been found in purifications of the spliceosome. In the past this family was thought, erroneously, to be associated with microfibrillin. Length = 277 |
| >gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis) | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 6e-04
Identities = 20/108 (18%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
Query: 7 DRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKERE 66
+ E+ + E+S + +S+ + +K + R +++ R + +E
Sbjct: 239 EGLLEESDDDGEEESDDESAWEGFESEYEPINKPVRPKRKTKAQRNKEKRRKELEREAKE 298
Query: 67 EKRERAREKEREREKRDRER-EDRERERERERERRERDREREKRERER 113
EK+ + + + R K + +E+ R R++E+R+ E++K +R +
Sbjct: 299 EKQLKKKLAQLARLKEIAKEVAQKEKARARKKEQRKERGEKKKLKRRK 346
|
This nucleolar family of proteins are involved in 60S ribosomal biogenesis. They are specifically involved in the processing beyond the 27S stage of 25S rRNA maturation. This family contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60). This protein has been found to interact with herpes simplex type 1 regulatory proteins. Length = 387 |
| >gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 6e-04
Identities = 66/388 (17%), Positives = 125/388 (32%), Gaps = 91/388 (23%)
Query: 489 KPMPIQAQALPVIMSGRDCIG----VAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGL 544
+ P Q +AL ++ R V TG+GKT+ + +K L
Sbjct: 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAI-AELKRST----------L 84
Query: 545 IMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDI 604
++ PT+EL+ Q ++KF + + +YGG + ++ V T +
Sbjct: 85 VLVPTKELLDQWAEALKKFLLLNDE--IGIYGGG------EKELEPAKVTVAT----VQT 132
Query: 605 LCTSGGKITNL--RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVL-FSATFPRQ 661
L + ++ DE + + R + + L +AT R+
Sbjct: 133 L-ARRQLLDEFLGNEFGLIIFDEVHHLPAPSY-----RRILELLSAAYPRLGLTATPERE 186
Query: 662 ---------------------VEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDR 700
E++ L +++ V + E ES R
Sbjct: 187 DGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEI----KVTLTEDEEREYAKESAR 242
Query: 701 FLRLLELLGEWYEKG---------------------------KILIFVHSQEKCDALFRD 733
F LL G + K LIF E + +
Sbjct: 243 FRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKL 302
Query: 734 LLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPN 793
L G + G + +RE+ + F++ +L+ V G+D+ + +++I
Sbjct: 303 FLAPGIVEA-ITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTG 361
Query: 794 HYEDYVHRVGRTGRA--GRKGCAITFIS 819
++ R+GR R G++ S
Sbjct: 362 SRRLFIQRLGRGLRPAEGKEDTLALDYS 389
|
Length = 442 |
| >gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 7e-04
Identities = 51/304 (16%), Positives = 111/304 (36%), Gaps = 46/304 (15%)
Query: 24 SEREQSTDSDEDKHD-KEKEKDKHRD-RDRRRDRDRDRDREKEREEKRERAREKER---- 77
+E + + SD D+ + +E E D + +D + + D E+E ++ E +
Sbjct: 3842 NEEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDSEEENQDLDEEVNDIPEDLSN 3901
Query: 78 ---EREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRDREKRRKV 134
E+ + ED ++ E+ + E + +E D +D++R+ ++ E+
Sbjct: 3902 SLNEKLWDEPNEEDLLETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSD 3961
Query: 135 ESDDSDEDKD-------------------RDRKRRRRHDDDHKER-VRERSLSRSNRHRD 174
+ DE + D K + D K+ + + + ++ +++
Sbjct: 3962 DVGIDDEIQPDIQENNSQPPPENEDLDLPEDLKLDEKEGDVSKDSDLEDMDMEAADENKE 4021
Query: 175 ENDESPREKLVEDDSDKKEKKTREEELEDEQRKLDEEMEKR-----RRRVQEWQELKRK- 228
E D E + ++D ++ E+ +D+ L E+ EK VQE +E
Sbjct: 4022 EADAEKDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDG 4081
Query: 229 -KEESERENRGDANVE----EPKAGRNWTLDREDSDDEEVPQTGKSETDMDADEEPKPSE 283
K + E E + PK D + + ++ + + E E
Sbjct: 4082 VKSDEELEQGEVPEDQAIDNHPKM------DAKSTFASAEADEENTDKGIVGENEELGEE 4135
Query: 284 NQVG 287
+ V
Sbjct: 4136 DGVR 4139
|
Length = 4600 |
| >gnl|CDD|221821 pfam12871, PRP38_assoc, Pre-mRNA-splicing factor 38-associated hydrophilic C-term | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 8e-04
Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 22 RRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREE-KRERAREKERERE 80
E E+ D +E + E++ D+ R RRR R R R R++ R+ +R R R++ R R+
Sbjct: 12 EEEESEEEEDDEEIRRKAERDVDRGRRSPRRRTRRRSRRRKRSRKRRRRRRDRDRARYRD 71
Query: 81 KRDREREDRERERERERERRERDRERE 107
+ DR+R+ +R R R R R RDR R
Sbjct: 72 RDDRDRDRYDRSRSRSRS-RSRDRRRR 97
|
This domain is a hydrophilic region found at the C-terminus of plant and metazoan pre-mRNA-splicing factor 38 proteins. The function is not known. Length = 97 |
| >gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 8e-04
Identities = 20/83 (24%), Positives = 43/83 (51%)
Query: 61 REKEREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKD 120
R ++RE + E E+++ EKR+ ER++ E E +++E + +E+ E+ R +E +
Sbjct: 17 RRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYE 76
Query: 121 RERKSRDREKRRKVESDDSDEDK 143
+ + S E+ + +E
Sbjct: 77 KLKSSFVVEEEGTDKLSADEESN 99
|
This is a family of proteins of approximately 300 residues, found in plants and vertebrates. They contain a highly conserved DDRGK motif. Length = 189 |
| >gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 8e-04
Identities = 36/171 (21%), Positives = 76/171 (44%), Gaps = 18/171 (10%)
Query: 9 DREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRR----------DRDRD 58
D EK R+ + ERE D+ + KE+ K D D+ + D+ RD
Sbjct: 189 DNEKGVNFRRDMTDLKERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRD 248
Query: 59 RDREKEREEKR-------ERAREKEREREKRDREREDRERERERERERRERDREREKRER 111
R+K++E K +E ++ E + RE E + E ++ E + ++ + +
Sbjct: 249 EVRQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDL 308
Query: 112 ERD-RDKEKDRERKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERV 161
+++ + EK+ E K + +K+R+ ++D + K + + ++D +
Sbjct: 309 KQESKASEKEAEDKELEAQKKREPVAEDLQKTKPQVEAQPTSLNEDAIDSS 359
|
This family consists of several Borrelia P83/P100 antigen proteins. Length = 489 |
| >gnl|CDD|223683 COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 8e-04
Identities = 39/267 (14%), Positives = 80/267 (29%), Gaps = 41/267 (15%)
Query: 14 KEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRD-RDREKEREEKRERA 72
K+ + S E + +E + ++ + + + + D + E
Sbjct: 657 KKALKLYSNEGEEDLKEALEEAIEELVEKLEDVLNEFKEQSEDIGYLEDAGELLRDFAPE 716
Query: 73 REKEREREKRDREREDRERER----------------ERERERRERDREREKRERERDRD 116
E + ER + + + E + + + R +++ +
Sbjct: 717 LEIKVERGNKILAKLFGRFLKAFNALKKLYEFAYTLEEEIQYLEDLLKARLEKDYQSKYL 776
Query: 117 KEKDRERKSRDREKRRKVE----SDDSDEDKDRDRKRRRRHDD--------DHKERVRER 164
D RE + K DD D + + K+ D + K E
Sbjct: 777 DLIDNLN--DAREIKDKESKAIDLDDIDFELELIGKQEINIDYILELLQTFNDKNGAYES 834
Query: 165 SLSRSNRHRDENDESPR--EKLVEDDSDKKE----KKTREEELEDEQRKLDEEMEKRRRR 218
R E E R +KL+E + KK E +E L ++ E+ ++
Sbjct: 835 LKELIERIIKEWIEDLRQKKKLIERLIEAINQYRAKKLDTAEKLEELYILAKKEEEFKQF 894
Query: 219 VQEWQ----ELKRKKEESERENRGDAN 241
+E EL + + + N
Sbjct: 895 AEEEGLNEEELAFYDDLALNGGKLPEN 921
|
Length = 962 |
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 0.001
Identities = 60/253 (23%), Positives = 94/253 (37%), Gaps = 34/253 (13%)
Query: 8 RDREKEKEKHREKSRRSE------REQSTDSDEDKHDKEKEKDKHRDR--DRRRDRDRDR 59
D E+ E+ RE++ E RE D E+ + E+E ++ R+R D D
Sbjct: 352 DDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAE 411
Query: 60 DREKEREEKRERAREKEREREKRDREREDRERERERERERRERDRE-----------REK 108
D +E E+R+ RE+E E E RER E +
Sbjct: 412 DFLEELREERDELREREAELEA----------TLRTARERVEEAEALLEAGKCPECGQPV 461
Query: 109 RERERDRDKEKDRERKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRER---S 165
E+DRER + +E + + ++ +R +D ER+ ER
Sbjct: 462 EGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDL 521
Query: 166 LSRSNRHRDENDESPREKLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEW-QE 224
R+ +E RE+ E E + EE + + +EE E+ R V E +
Sbjct: 522 EELIAERRETIEEK-RERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSK 580
Query: 225 LKRKKEESERENR 237
L KE E R
Sbjct: 581 LAELKERIESLER 593
|
Length = 880 |
| >gnl|CDD|219953 pfam08648, DUF1777, Protein of unknown function (DUF1777) | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.001
Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 4 SHRDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREK 63
R+R RE+ + + R+ R R +S + + + + R R R RDR R+R+K
Sbjct: 22 DRRERRRERSRSRERD---RRRRSRSRSPHRSRRSRSPRRHRSRSRSPSRRRDRKRERDK 78
Query: 64 EREEKRERAREKEREREKRDRERED 88
+ E ++R R+K + E + + ++
Sbjct: 79 DAREPKKRERQKLIKEEDLEGKSDE 103
|
This is a family of eukaryotic proteins of unknown function. Some of the proteins in this family are putative nucleic acid binding proteins. Length = 158 |
| >gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 0.001
Identities = 26/101 (25%), Positives = 57/101 (56%), Gaps = 6/101 (5%)
Query: 6 RDRDREKEKEKHREKSRRSERE---QSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDRE 62
RD +E ++RE++RR+ R+ Q+ ++ E + + EK + +D ++ R R+R R
Sbjct: 624 RDNRTRREGRENREENRRNRRQAQQQTAETRESQQAEVTEKARTQDEQQQAPR-RERQRR 682
Query: 63 KEREEKRERARE-KEREREKRDREREDRERERERERERRER 102
+ +EKR+ +E K E++ + ++E ++ + RR++
Sbjct: 683 RN-DEKRQAQQEAKALNVEEQSVQETEQEERVQQVQPRRKQ 722
|
Length = 1068 |
| >gnl|CDD|218177 pfam04615, Utp14, Utp14 protein | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 0.001
Identities = 62/307 (20%), Positives = 112/307 (36%), Gaps = 39/307 (12%)
Query: 10 REKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREK------ 63
R +KEK +E+ + E D + + EK +RRR +R + K
Sbjct: 233 RVHKKEKLKEELKEFEELVKADPEAALEELEK-------LERRRAEERMTLKHKNTSKWA 285
Query: 64 --------------EREEKRERAREKEREREKRDREREDRERERERERERRERDREREKR 109
R+ E+ R+ E R K E + E E E + + E E
Sbjct: 286 KSMLKTGRAKYDEEARKALEEQLRQGEELRRK----IEGKSVSEEDEDEDSDSEEEDEDD 341
Query: 110 ERERDRDKEKDRERKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRE--RSLS 167
+ + D + + R + + K DD + K +R + KE L
Sbjct: 342 DED---DDDGENPWMLRKKLGKLKEGEDDEENSGLLSMKFMQRAEARKKEENDAEIEELR 398
Query: 168 RSNRHRDENDESPREKLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKR 227
R +E+DE E+ + + +++ E E E +KL +E + + +E E +
Sbjct: 399 RELEGEEESDEEENEEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESDEEEE 458
Query: 228 KKEESERENRGDANVEEPKAGRNWTLDREDSDDEEVP---QTGKSETDMDADEEPKPSEN 284
++E E + AN ++ + + E+ DEE P T + K S +
Sbjct: 459 LEDEEEAKVEKVANKLLKRSEKAQKEEEEEELDEENPWLKTTSSVGKSAKKQDSKKKSSS 518
Query: 285 QVGDAML 291
++ A
Sbjct: 519 KLDKAAN 525
|
This protein is found to be part of a large ribonucleoprotein complex containing the U3 snoRNA. Depletion of the Utp proteins impedes production of the 18S rRNA, indicating that they are part of the active pre-rRNA processing complex. This large RNP complex has been termed the small subunit (SSU) processome. Length = 728 |
| >gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.001
Identities = 45/231 (19%), Positives = 78/231 (33%), Gaps = 15/231 (6%)
Query: 2 AHSHRDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDR 61
A + D+ E E E+ D+ + ++E R R
Sbjct: 274 AQTQYDQLSRDLGRARDELETAREEERELDARTEALERE----ADALRTRLEALQGSPAY 329
Query: 62 EKEREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDR 121
+ E +R RA + + D + RE E E ERR R E R + +R+ R
Sbjct: 330 QDAEELERARADAEALQAAAADARQAIREAESRLEEERR-RLDEEAGRLDDAERELRAAR 388
Query: 122 ERKSRDREK--------RRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHR 173
E+ +R E+ + + E ++ RR D D R ++ R
Sbjct: 389 EQLARAAERAGLSPAHTAEPDAALAAQELQELGALDARRQDADRVIAQRSEQVALLRRRD 448
Query: 174 DENDESPREKLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQE 224
D D + E ++++ E E + +L +E R W +
Sbjct: 449 DVADRA--EATHAAARARRDELDEEAEQAAARAELADEAVHREGARLAWVD 497
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length [Hypothetical proteins, Conserved]. Length = 1353 |
| >gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.001
Identities = 40/203 (19%), Positives = 56/203 (27%), Gaps = 9/203 (4%)
Query: 48 DRDRRRDRDRDRDREKEREEKRERAREKEREREKRDREREDRERERERERERRERDRERE 107
D + R + + +R R R E ER+ E RE R
Sbjct: 755 DDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAESAERELARAAR 814
Query: 108 KRERERDRDKEKDRERKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLS 167
K K+ RE RD D+ E KR H + VRE
Sbjct: 815 KAAAAAAAWKQARREL-ERDAADLDLPTDPDALEAVGLALKRFGDHLHTLEVAVREL--- 870
Query: 168 RSNRHRDENDESPREKLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRV-QEWQELK 226
RH R + +SD +E E E + + V E+
Sbjct: 871 ---RHAATRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGAMVDEI- 926
Query: 227 RKKEESERENRGDANVEEPKAGR 249
R + R E P+
Sbjct: 927 RARLAETRAALASGGRELPRLAE 949
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length [Hypothetical proteins, Conserved]. Length = 1353 |
| >gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.001
Identities = 45/213 (21%), Positives = 78/213 (36%), Gaps = 27/213 (12%)
Query: 57 RDRDREKER-EEKRER--AREKEREREKRDREREDRERERERERERRERDREREKRERER 113
R ++EK++ EE + R AR+ EREK RE R ++ R +D++ R
Sbjct: 439 RAIEQEKKKAEEAKARFEARQARLEREKAARE----ARHKKAAEARAAKDKDAVAAALAR 494
Query: 114 DRDKEKDRERKSRDREKRRKVESDDSDEDKDRDRKRRRR--------HDDDHKERVRERS 165
+ K+ + + R S + R + R R D K V +
Sbjct: 495 VKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQARARQAEKQAAAAADPKKAAV-AAA 553
Query: 166 LSRSNRHRDENDESPREKLVEDDSDK----------KEKKTREEELEDEQRKLDEEMEKR 215
++R+ + + E E D K K KK ++ E + E++ +
Sbjct: 554 IARAKAKKAAQQAANAEAEEEVDPKKAAVAAAIARAKAKKAAQQAASAEPEEQVAEVDPK 613
Query: 216 RRRVQEWQE-LKRKKEESERENRGDANVEEPKA 247
+ V K KK E + + V+ KA
Sbjct: 614 KAAVAAAIARAKAKKAEQQANAEPEEPVDPRKA 646
|
Length = 695 |
| >gnl|CDD|116627 pfam08017, Fibrinogen_BP, Fibrinogen binding protein | Back alignment and domain information |
|---|
Score = 41.8 bits (97), Expect = 0.001
Identities = 57/272 (20%), Positives = 120/272 (44%), Gaps = 12/272 (4%)
Query: 6 RDRDREKEKEKH-REKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKE 64
R RD E + + E+ +R +S + ++ ++ E + RR RD + +
Sbjct: 34 RQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGN 93
Query: 65 REEKRERAREKEREREKRDREREDRE-RERERERERRERDREREKRERERDRDKEKDRER 123
E+R+R E + + +R + D E + + ERR+RD E + +R +++D E
Sbjct: 94 VLERRQRDVENKSQGNVLERRQRDVENKSQGNVLERRQRDAENRSQGNVLER-RQRDAEN 152
Query: 124 KSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREK 183
KS+ R+ ++ + +R+R ++ + V ER N R++
Sbjct: 153 KSQGNVLERRQRDAENRSQGNVLERRQRDVENKSQGNVLERRQRDVENKSQGNVLERRQR 212
Query: 184 LVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQE---LKRKKEESERENRGDA 240
E+ S + R+ ++E+ + +E+R+R V+ + L+R++ ++E ++G+
Sbjct: 213 DAENRSQGNVLERRQRDVEN--KSQGNVLERRQRDVENKSQGNVLERRQRDAENRSQGNV 270
Query: 241 NVEEPKAGRNWT----LDREDSDDEEVPQTGK 268
+ N + L+R D E Q G+
Sbjct: 271 LERRQRDVENKSQGNVLERRQRDAENKSQVGQ 302
|
Proteins in this family bind to fibrinogen. Members of this family includes the fibrinogen receptor, FbsA, which mediates platelet aggregation. Length = 393 |
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.002
Identities = 34/201 (16%), Positives = 79/201 (39%), Gaps = 7/201 (3%)
Query: 10 REKEKEKHREKSRRSEREQSTDSDEDKH--DKEKEKDKHRDRDRRRDRDRDRDREKEREE 67
++ EKE +EK E E+ E K ++E+E+ + +++ + + +K+ E
Sbjct: 325 KKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLES 384
Query: 68 KRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRD 127
+R + K +E E + E++E + E +E D +E+++ E +E
Sbjct: 385 ERLSSAAKLKEEELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEE-----LEES 439
Query: 128 REKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVED 187
E ++ +++ +E + + K + + K + R+KL E
Sbjct: 440 LETKQGKLTEEKEELEKQALKLLKDKLELKKSEDLLKETKLVKLLEQLELLLLRQKLEEA 499
Query: 188 DSDKKEKKTREEELEDEQRKL 208
+ + + L +
Sbjct: 500 SQKESKAREGLAVLLALIKDG 520
|
This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162 |
| >gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.002
Identities = 49/229 (21%), Positives = 89/229 (38%), Gaps = 16/229 (6%)
Query: 177 DESPREKLVEDDSDKKEKKTREEELEDEQRKLDE---EMEKRRRRVQEWQELKRKKEESE 233
+ES E E +++ K + E E+ E++ E E+E + + E + + E E
Sbjct: 661 EESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGE 720
Query: 234 RENRGDANVEEPKAGRNWTLDREDSDDEEVPQTGKSETDMDADEEPKPSENQVGDAMLVD 293
E G + E + G E D+ E GK E + + D + E + D
Sbjct: 721 TEAEGTEDEGEIETGEE---GEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKED 777
Query: 294 SDGGSAAPALQIGAAEDEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKM-DR 352
D G +I A ED ++ + + + E + ++ D
Sbjct: 778 EDEG------EIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDE 831
Query: 353 KGDRRSNGEQPKKSSNKSLGRIIPGEDSDSDYGDLENDEKPLEDEDDDE 401
G++ N E ++ G + G SD GD E +E+ E+E+++E
Sbjct: 832 TGEQELNAENQGEAKQDEKG--VDGGGG-SDGGDSEEEEEEEEEEEEEE 877
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096 |
| >gnl|CDD|165222 PHA02896, PHA02896, A-type inclusion like protein; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.002
Identities = 47/213 (22%), Positives = 85/213 (39%), Gaps = 32/213 (15%)
Query: 96 ERERRERDRER---EKRERERDRDKEKDRERKSRDREKRRKVESDD----SDED---KDR 145
+RERR +D + + E ++ ++ +RD ++ + E +D DED KD
Sbjct: 354 DRERRPKDYKEYYIDNFECDKMKNCPSTNGTLNRDEDEDKIEEDNDDYNNDDEDDLIKDE 413
Query: 146 DRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVEDDSDKKEKKT-------RE 198
RRH + + ++N++ +DESPR K +DD D + +
Sbjct: 414 APILNRRHGQMDDKYDKRDHRYKNNKYDIYDDESPRYKYKDDDYDDNDDNDDDHIIPKKA 473
Query: 199 EELEDEQRKLDEEME-------------KRRRRVQEWQELKRKKEESERENRGDANVEEP 245
LED + DE M+ RR E + + R + + E+P
Sbjct: 474 NNLEDAKDFEDEMMDAIADDDYTPKSIRNRRNGYLLKDEDRYYYDRGHRNLGAEKDPEKP 533
Query: 246 KAG--RNWTLDREDSDDEEVPQTGKSETDMDAD 276
+ D++ SDD+ + K+ ++AD
Sbjct: 534 HPDKDEEYPEDKDKSDDDRLNDADKAMRKLEAD 566
|
Length = 616 |
| >gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 21/73 (28%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 59 RDREKEREEKRERAREKEREREKRDREREDRER-ERERERERRERDREREKRERERDRDK 117
+ ++ K E + + ++RE + ERE+R++ E +RE ER+E + E+RE++++ ++
Sbjct: 1 KKIGAKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEE 60
Query: 118 EKDRERKSRDREK 130
K+RE ++R ++
Sbjct: 61 RKEREEQARKEQE 73
|
This is a family of proteins of approximately 300 residues, found in plants and vertebrates. They contain a highly conserved DDRGK motif. Length = 189 |
| >gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR) | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 0.002
Identities = 36/213 (16%), Positives = 84/213 (39%), Gaps = 1/213 (0%)
Query: 5 HRDR-DREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREK 63
HR R +++K ++K REK +R R + E D + + + D +
Sbjct: 90 HRQRLEKDKREKKKREKEKRGRRRHHSLGTESDEDIAPAQMVDIVTEEMPENALPSDEDD 149
Query: 64 EREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRER 123
+ RA + + ++ D E+ ++ R E + + E++ + K+K+++
Sbjct: 150 KDPNDPYRALDIDLDKPLADSEKLPVQKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKKE 209
Query: 124 KSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREK 183
K ++R+K +K E + + + + S D + P++
Sbjct: 210 KEKERDKDKKKEVEGFKSLLLALDDSPASAASVAEADEASLANTVSGTAPDSEPDEPKDA 269
Query: 184 LVEDDSDKKEKKTREEELEDEQRKLDEEMEKRR 216
E+ + K +++ E E++K ++ R
Sbjct: 270 EAEETKKSPKHKKKKQRKEKEEKKKKKKHHHHR 302
|
This family consists of several bovine specific leukaemia virus receptors which are thought to function as transmembrane proteins, although their exact function is unknown. Length = 561 |
| >gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 28/139 (20%), Positives = 61/139 (43%), Gaps = 3/139 (2%)
Query: 111 RERDRDKEKDRERKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSN 170
+ + KE +R + +E K+E+ + + R+R ++ + +ER +
Sbjct: 27 KRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERL 86
Query: 171 RHRDENDESPREKLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKE 230
++E ++ EKL D+ + + + RE+ L + +L+E ++ + L ++
Sbjct: 87 VQKEEQLDARAEKL---DNLENQLEEREKALSARELELEELEKQLDNELYRVAGLTPEQA 143
Query: 231 ESERENRGDANVEEPKAGR 249
DA +EE KA R
Sbjct: 144 RKLLLKLLDAELEEEKAQR 162
|
Length = 508 |
| >gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97 family | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 18/85 (21%), Positives = 35/85 (41%)
Query: 61 REKEREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKD 120
R+ +EK A E++ E + E + + E +R E + + E +E++
Sbjct: 16 RKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAASGEGGGGEEEE 75
Query: 121 RERKSRDREKRRKVESDDSDEDKDR 145
E K+ E R + D ++R
Sbjct: 76 EEAKAEAAEFRAYLRGGDDALAEER 100
|
This model family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease [Mobile and extrachromosomal element functions, Prophage functions]. Length = 384 |
| >gnl|CDD|233069 TIGR00643, recG, ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.002
Identities = 73/321 (22%), Positives = 128/321 (39%), Gaps = 51/321 (15%)
Query: 514 GSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVP 573
GSGKTL L ML I+ VA +MAPT L +Q ++ +R +G+
Sbjct: 266 GSGKTLVAALAMLAAIEAGYQVA--------LMAPTEILAEQHYNSLRNLLAPLGIEVAL 317
Query: 574 VYG---GSGVAQQISELKRGT-EIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRM 629
+ G G + + + G +VV T + + +R+ +++DE R
Sbjct: 318 LTGSLKGKRRKELLETIASGQIHLVVGTHALIQEK--------VEFKRLALVIIDEQHRF 369
Query: 630 FDMGFEPQITRIVQNIRPDRQTVLFSAT-FPRQVEILARKVLNKPVEIQV-----GGRSV 683
+ + P ++ SAT PR + + + ++ + GR
Sbjct: 370 GVEQRKKLREKGQGGFTPH--VLVMSATPIPRTLAL----TVYGDLDTSIIDELPPGRKP 423
Query: 684 VNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFV----HSQEKCD-----ALFRDL 734
+ T L++ D + E + E KG+ V EK D AL+ L
Sbjct: 424 I---TTVLIKH----DEKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERL 476
Query: 735 LKH--GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAP 792
K Y LHG ++E+ + +F+ ++L+AT+V G+DV +++ DA
Sbjct: 477 KKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAE 536
Query: 793 NHYEDYVHRV-GRTGRAGRKG 812
+H++ GR GR +
Sbjct: 537 RFGLSQLHQLRGRVGRGDHQS 557
|
[DNA metabolism, DNA replication, recombination, and repair]. Length = 630 |
| >gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.002
Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 10/129 (7%)
Query: 89 RERERERERERRERDREREKRERERD---RDKEKDRERKSRDREKRRKVESDDSDEDKDR 145
R+R E++ E +R E +++ KE E K + R ++E + + +
Sbjct: 19 RKRIAEKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNEL 78
Query: 146 DRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVEDDSDKKEKKTREEELEDEQ 205
R RR RE +L R D+ +E+ +K E + +K +EEELE+
Sbjct: 79 QRLERRL-------LQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELI 131
Query: 206 RKLDEEMEK 214
+ EE+E+
Sbjct: 132 AEQREELER 140
|
Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514 |
| >gnl|CDD|113290 pfam04514, BTV_NS2, Bluetongue virus non-structural protein NS2 | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 24/111 (21%), Positives = 47/111 (42%)
Query: 7 DRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKERE 66
+R++EKE++ + + DSDED++ ++E ++D+ +R ER
Sbjct: 164 EREKEKEEQPMKPAFKPERWMGGPDSDEDENPLDEEAPDMTPETSKQDQKEERRAAVERR 223
Query: 67 EKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDK 117
E+R R+++E E ER+ + D E E + +
Sbjct: 224 LAELVEMINWNLEERRRDLRKEQELEENVERDSDDEDEHGEDSEDGETKPE 274
|
This family includes NS2 proteins from other members of the Orbivirus genus. NS2 is a non-specific single-stranded RNA-binding protein that forms large homomultimers and accumulates in viral inclusion bodies of infected cells. Three RNA binding regions have been identified in Bluetongue virus serotype 17 at residues 2-11, 153-166 and 274-286. NS2 multimers also possess nucleotidyl phosphatase activity. The precise function of NS2 is not known, but it may be involved in the transport and condensation of viral mRNAs. Length = 363 |
| >gnl|CDD|129694 TIGR00606, rad50, rad50 | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 0.002
Identities = 50/253 (19%), Positives = 98/253 (38%), Gaps = 41/253 (16%)
Query: 12 KEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEKRER 71
KEK S+ Q S E E E D ++R + + + + + + E K +
Sbjct: 216 KEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALK 275
Query: 72 AREKEREREKRD----------------------REREDRERERERER----------ER 99
+R+K+ E++ + +R RE+ERE ER
Sbjct: 276 SRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKER 335
Query: 100 RERDREREKRERER-------DRDKEKDRERKSRDREKRRKVESDDSDEDKDRDRKRRRR 152
R ++E+ + E+ DR +E R R S + ++E D + +R+ +
Sbjct: 336 RLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSERQIKNF 395
Query: 153 HDDDHKERVRERSLSRSNRHRDENDESPREKLVEDDSDKKEKKTREEELEDEQRKLDEEM 212
H +E + + + R K + D + EKK +E ++ L+++
Sbjct: 396 H--TLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQ 453
Query: 213 EKRRRRVQEWQEL 225
E+ + ++E Q+L
Sbjct: 454 EELKFVIKELQQL 466
|
All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 1311 |
| >gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.002
Identities = 19/61 (31%), Positives = 36/61 (59%)
Query: 59 RDREKEREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKE 118
EK+REE+++ ++K +K++ E E+ + ++E E+E E + E EK E E + K+
Sbjct: 417 EKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKKQ 476
Query: 119 K 119
Sbjct: 477 A 477
|
Length = 482 |
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.003
Identities = 49/217 (22%), Positives = 93/217 (42%), Gaps = 19/217 (8%)
Query: 9 DREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEK 68
+ ++EK+ H + D + +++++++E+ + RD + +E EE+
Sbjct: 197 EEKEEKDLHERLNGLESELAELDEEIERYEEQREQARET-------RDEADEVLEEHEER 249
Query: 69 RERAREKEREREKRDREREDRERERE------RERERRERDREREKRERERDRDKEKDRE 122
RE E E E + ERERE R+ R+R E E D E +
Sbjct: 250 REELETLEAEIEDLRETIAETEREREELAEEVRDL----RERLEELEEERDDLLAEAGLD 305
Query: 123 RKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPRE 182
+ + R+ E +D +++ RDR R E ++ + +E RE
Sbjct: 306 DADAEAVEARREELED-RDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEEL-RE 363
Query: 183 KLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRV 219
+ E +S+ +E + E+ +E +L+EE+E+ R R
Sbjct: 364 EAAELESELEEAREAVEDRREEIEELEEEIEELRERF 400
|
Length = 880 |
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.003
Identities = 37/174 (21%), Positives = 74/174 (42%), Gaps = 8/174 (4%)
Query: 64 EREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERD-RDKEKDRE 122
E + K+E+A E+ E E+ + E+ ++ ER REREK ER + ++++ E
Sbjct: 167 EFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLR--REREKAERYQALLKEKREYE 224
Query: 123 RKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPRE 182
+EK + E +R + E + E R +E ++
Sbjct: 225 GYELLKEKE---ALERQKEAIERQLASLEEELEKLTEEISELEK-RLEEIEQLLEELNKK 280
Query: 183 KLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESEREN 236
+ ++ K + ELE E L+ + ++ R +++ +E + K E+E +
Sbjct: 281 IKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEE-RLAKLEAEIDK 333
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.003
Identities = 41/290 (14%), Positives = 99/290 (34%), Gaps = 56/290 (19%)
Query: 8 RDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREE 67
+ E++ + ++ ++ER + ++ + + + + + ++ +E E E
Sbjct: 196 NELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEEL 255
Query: 68 KRERAREKEREREKRDREREDRERERE--------------------------------- 94
+ A +E E + + E E E E
Sbjct: 256 EELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLE 315
Query: 95 RERERRERDREREKRERERDRD-------------KEKDRERKSRDREKRRKVESDDSDE 141
R+ E E E + + + + +E + + + E + E
Sbjct: 316 RQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLE 375
Query: 142 DKDRDRKRRRRHDDDHKERVR---------ERSLSRSNRHRDENDESPREKLVE-DDSDK 191
+ + + R + ++ E L R R+ + E L + ++++
Sbjct: 376 ELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAEL 435
Query: 192 KEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGDAN 241
KE + EELE+E +L EE+E+ ++E +E + E++ +
Sbjct: 436 KELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELA 485
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
| >gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.003
Identities = 43/249 (17%), Positives = 96/249 (38%), Gaps = 21/249 (8%)
Query: 7 DRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDR----- 61
D + E+ + + + + + E+ DK + + D R
Sbjct: 4085 DEELEQGEVPEDQAIDNHPKMDAKSTFASAEADEENTDKGIVGENEELGEEDGVRGNGTA 4144
Query: 62 EKEREEKRERAREKEREREKRDRERE---DRERERERERERRE-RDREREKRERERDRDK 117
+ E E+ +E + + DR+ + D RE ++ E D + + D +
Sbjct: 4145 DGEFEQVQEDTSTPKEAMSEADRQYQSLGDHLREWQQANRIHEWEDLTESQSQAFDDSEF 4204
Query: 118 EKDRERKSRDRE-----KRRKVESDDSDE--DKDRDRKRRRRHDDDHKERVRERSLSRSN 170
+E + D + ++ +++S D DE +++ D +D + V ++ L
Sbjct: 4205 MHVKEDEEEDLQALGNAEKDQIKSIDRDESANQNPDSMNSTNIAEDEADEVGDKQLQDGQ 4264
Query: 171 RHRDEN----DESPREKLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELK 226
D D P E + S+K + + +E++EDE + ++ + E ++L
Sbjct: 4265 DISDIKQTGEDTLPTEFGSINQSEKVFELSEDEDIEDELPDYNVKITP-AMPIDEARDLW 4323
Query: 227 RKKEESERE 235
K E+S ++
Sbjct: 4324 NKHEDSTKQ 4332
|
Length = 4600 |
| >gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.003
Identities = 24/151 (15%), Positives = 53/151 (35%), Gaps = 3/151 (1%)
Query: 8 RDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREE 67
+ K+ + + + +SD+ D ++EK K + + +++ + D +K +
Sbjct: 205 GGGGRGKDLKIKDLEGDDEDDGDESDKGGEDGDEEKSKKKKKKLAKNKKKLDDDKKGKRG 264
Query: 68 KRERAREKERER---EKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERK 124
+ A E + + E R+ + + E RE E + E E +
Sbjct: 265 GDDDADEYDSDDGDDEGREEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESE 324
Query: 125 SRDREKRRKVESDDSDEDKDRDRKRRRRHDD 155
E+ + K + +K DD
Sbjct: 325 EEKNEEEGGLSKKGKKLKKLKGKKNGLDKDD 355
|
Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II. Length = 528 |
| >gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter subunit G; Reviewed | Back alignment and domain information |
|---|
Score = 39.7 bits (92), Expect = 0.004
Identities = 26/94 (27%), Positives = 53/94 (56%), Gaps = 2/94 (2%)
Query: 69 RERAREKEREREKRDREREDRERERERERERRERDREREKRERERDR-DKEKDRERKSRD 127
R++ R +++ K+ + R+ + E+ R+ RE ER + ER ++ D+ +D+E + R+
Sbjct: 104 RDQLRSVKKDDIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQERE 163
Query: 128 REKRR-KVESDDSDEDKDRDRKRRRRHDDDHKER 160
RE++ + +SDDS+ + + DDD E+
Sbjct: 164 REEQTIEEQSDDSEHEIIEQDESETESDDDKTEK 197
|
Length = 197 |
| >gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family | Back alignment and domain information |
|---|
Score = 39.3 bits (91), Expect = 0.004
Identities = 33/152 (21%), Positives = 84/152 (55%), Gaps = 1/152 (0%)
Query: 24 SEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEKRERAREKEREREKRD 83
++ E++T +K + +E+ + +++RR ++DR E+E ++R RE E R
Sbjct: 19 TDAEEATRLLAEKRRQAREQREQEEQERREQEEQDR-LEREELKRRAAEERLRREEEARR 77
Query: 84 REREDRERERERERERRERDREREKRERERDRDKEKDRERKSRDREKRRKVESDDSDEDK 143
+E E + E+ + + E + ++E+ E+ER + ++++ E ++R+ +R ++E + +
Sbjct: 78 QEEERAREKEEKAKRKAEEEEKQEQEEQERIQKQKEEAEARAREEAERMRLEREKHFQQI 137
Query: 144 DRDRKRRRRHDDDHKERVRERSLSRSNRHRDE 175
+++R R++ ++ +R R+ +S + D
Sbjct: 138 EQERLERKKRLEEIMKRTRKSEVSPQVKKEDP 169
|
The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent. Length = 171 |
| >gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.004
Identities = 41/217 (18%), Positives = 88/217 (40%), Gaps = 19/217 (8%)
Query: 53 RDRDRDRDREKEREEKRERAREKEREREKRDREREDRERERERERERRERDR------ER 106
R++ +R ++ EE RA+++ E E+ E E++ ++ E E + E+ R
Sbjct: 5 REQQELEERMEQMEEDMRRAQKELEEYEETALELEEKLKQEEEEAQLLEKKADELEEENR 64
Query: 107 EKRERERDRDKEKDRERKSRDREKRR----KVESDDSDEDKDRDRKRRRRHDDDHKERVR 162
E ++E++R D + E + + + + ++ R + H+ +
Sbjct: 65 RLEEEAAASEEERERLEAEVDEATAEVAKLEEEREKKEAETRQLQQELREAQEAHERARQ 124
Query: 163 ERSLSRSNRHRDENDESPREKLVEDDSDKKEKKTREEELEDEQRKLDEE-----MEKRRR 217
E + + + +P + D E+ + + E + + + EE EK R
Sbjct: 125 ELLEAAAAPTAPPHVAAPVNGEQLEPDDNGEEASADLETDPDMKDRSEEERVTYAEKNER 184
Query: 218 RVQEWQELKRKKEESERENRGDAN----VEEPKAGRN 250
+ Q LK + + E++ AN E +AGR+
Sbjct: 185 LQTQLQALKSELAAARDESKETANDILHEENVRAGRD 221
|
This family of proteins contain a band 4.1 domain (pfam00373), at their amino terminus. This family represents the rest of these proteins. Length = 244 |
| >gnl|CDD|219061 pfam06495, Transformer, Fruit fly transformer protein | Back alignment and domain information |
|---|
Score = 39.3 bits (91), Expect = 0.004
Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 5/104 (4%)
Query: 19 EKSRRSEREQSTDSDEDKH-----DKEKEKDKHRDRDRRRDRDRDRDREKEREEKRERAR 73
+ S RS R+ DS + + D+ +E+D+ R+ +R+ + R R+R
Sbjct: 4 DSSSRSPRDTRRDSRKKEKIPYFADEVRERDRVRNLRQRKTQSTRPTTSHRGRRTRSRSR 63
Query: 74 EKEREREKRDREREDRERERERERERRERDREREKRERERDRDK 117
+ ER R R R R R R E+R R R R +
Sbjct: 64 SQSAERNSCQRRHRSRSRSRNRSDSRHRSTSSTERRRRSRSRSR 107
|
This family consists of transformer proteins from several Drosophila species and also from Ceratitis capitata (Mediterranean fruit fly). The transformer locus (tra) produces an RNA processing protein that alternatively splices the doublesex pre-mRNA in the sex determination hierarchy of Drosophila melanogaster. Length = 182 |
| >gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.004
Identities = 43/213 (20%), Positives = 92/213 (43%), Gaps = 28/213 (13%)
Query: 28 QSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEKRERAREKEREREKRDRERE 87
+ + DE+ +E+E+++ D D D + + + E E ++E RE+ +++KR
Sbjct: 35 EEEEDDEEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKELQREERLKKKKRV---- 90
Query: 88 DRERERERERERRERDREREKRERERDRDKEKDRERKSRDREKRRKVESDDSDEDKDRDR 147
+ + +E ++++K++ + + R + K ++ + D R R
Sbjct: 91 -------KTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKK---KSERISWAPTLLDSPR-R 139
Query: 148 KRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVEDDSDKKEKKTREEELED---- 203
K R +KE ER L R + R++ + K+++ T+EE L +
Sbjct: 140 KSSRSSTVQNKEATHER-LKEREIRRKKIQAKARKRKEK---KKEKELTQEERLAEAKET 195
Query: 204 EQRKLD-----EEMEKRRRRVQEWQELKRKKEE 231
E+ L EE E+ +++ + KR+ E
Sbjct: 196 ERINLKSLERYEEQEEEKKKAKIQALKKRRLYE 228
|
The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1112 | |||
| KOG0334 | 997 | consensus RNA helicase [RNA processing and modific | 100.0 | |
| KOG0339 | 731 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0336 | 629 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 100.0 | |
| KOG0341 | 610 | consensus DEAD-box protein abstrakt [RNA processin | 100.0 | |
| PTZ00110 | 545 | helicase; Provisional | 100.0 | |
| KOG0330 | 476 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 100.0 | |
| KOG0338 | 691 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 100.0 | |
| KOG0335 | 482 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0328 | 400 | consensus Predicted ATP-dependent RNA helicase FAL | 100.0 | |
| KOG0342 | 543 | consensus ATP-dependent RNA helicase pitchoune [RN | 100.0 | |
| KOG0340 | 442 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0345 | 567 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0326 | 459 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| KOG0343 | 758 | consensus RNA Helicase [RNA processing and modific | 100.0 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 100.0 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 100.0 | |
| KOG0348 | 708 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 100.0 | |
| KOG0347 | 731 | consensus RNA helicase [RNA processing and modific | 100.0 | |
| KOG0346 | 569 | consensus RNA helicase [RNA processing and modific | 100.0 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 100.0 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PTZ00424 | 401 | helicase 45; Provisional | 100.0 | |
| KOG0332 | 477 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0337 | 529 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0327 | 397 | consensus Translation initiation factor 4F, helica | 100.0 | |
| KOG4284 | 980 | consensus DEAD box protein [Transcription] | 100.0 | |
| KOG0350 | 620 | consensus DEAD-box ATP-dependent RNA helicase [RNA | 100.0 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 100.0 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 100.0 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 100.0 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 100.0 | |
| KOG0924 | 1042 | consensus mRNA splicing factor ATP-dependent RNA h | 100.0 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 100.0 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 100.0 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 100.0 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 100.0 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 100.0 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 100.0 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 100.0 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 100.0 | |
| KOG0329 | 387 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 100.0 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 100.0 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 100.0 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 100.0 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 100.0 | |
| KOG0349 | 725 | consensus Putative DEAD-box RNA helicase DDX1 [RNA | 100.0 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 100.0 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 100.0 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 100.0 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 100.0 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 100.0 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 100.0 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 100.0 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 100.0 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 100.0 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 100.0 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 100.0 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 100.0 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 100.0 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 100.0 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 100.0 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 100.0 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 100.0 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 100.0 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 100.0 | |
| KOG0352 | 641 | consensus ATP-dependent DNA helicase [Replication, | 100.0 | |
| KOG0351 | 941 | consensus ATP-dependent DNA helicase [Replication, | 100.0 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 100.0 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 100.0 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 100.0 | |
| KOG0354 | 746 | consensus DEAD-box like helicase [General function | 99.98 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 99.97 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 99.97 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 99.97 | |
| KOG0353 | 695 | consensus ATP-dependent DNA helicase [General func | 99.97 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 99.97 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 99.96 | |
| KOG0923 | 902 | consensus mRNA splicing factor ATP-dependent RNA h | 99.96 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 99.96 | |
| KOG0922 | 674 | consensus DEAH-box RNA helicase [RNA processing an | 99.96 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 99.96 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 99.96 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 99.96 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 99.96 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 99.96 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 99.95 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 99.95 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 99.95 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 99.94 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 99.93 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 99.93 | |
| KOG0926 | 1172 | consensus DEAH-box RNA helicase [RNA processing an | 99.93 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 99.92 | |
| KOG0947 | 1248 | consensus Cytoplasmic exosomal RNA helicase SKI2, | 99.92 | |
| KOG0948 | 1041 | consensus Nuclear exosomal RNA helicase MTR4, DEAD | 99.92 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 99.91 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 99.91 | |
| KOG0950 | 1008 | consensus DNA polymerase theta/eta, DEAD-box super | 99.91 | |
| KOG0920 | 924 | consensus ATP-dependent RNA helicase A [RNA proces | 99.9 | |
| KOG0385 | 971 | consensus Chromatin remodeling complex WSTF-ISWI, | 99.9 | |
| KOG0925 | 699 | consensus mRNA splicing factor ATP-dependent RNA h | 99.9 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 99.89 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 99.88 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 99.87 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 99.86 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 99.86 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 99.86 | |
| KOG0384 | 1373 | consensus Chromodomain-helicase DNA-binding protei | 99.85 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 99.85 | |
| KOG2340 | 698 | consensus Uncharacterized conserved protein [Funct | 99.85 | |
| KOG0387 | 923 | consensus Transcription-coupled repair protein CSB | 99.85 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 99.84 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 99.84 | |
| PF06862 | 442 | DUF1253: Protein of unknown function (DUF1253); In | 99.81 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 99.81 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 99.81 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 99.8 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 99.79 | |
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 99.79 | |
| KOG0390 | 776 | consensus DNA repair protein, SNF2 family [Replica | 99.78 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.78 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 99.77 | |
| KOG0389 | 941 | consensus SNF2 family DNA-dependent ATPase [Chroma | 99.75 | |
| KOG1000 | 689 | consensus Chromatin remodeling protein HARP/SMARCA | 99.75 | |
| KOG1123 | 776 | consensus RNA polymerase II transcription initiati | 99.73 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 99.73 | |
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 99.72 | |
| KOG4150 | 1034 | consensus Predicted ATP-dependent RNA helicase [RN | 99.71 | |
| KOG0949 | 1330 | consensus Predicted helicase, DEAD-box superfamily | 99.7 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 99.69 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.69 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 99.68 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 99.68 | |
| KOG0953 | 700 | consensus Mitochondrial RNA helicase SUV3, DEAD-bo | 99.66 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 99.64 | |
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 99.62 | |
| KOG0386 | 1157 | consensus Chromatin remodeling complex SWI/SNF, co | 99.6 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 99.59 | |
| KOG0388 | 1185 | consensus SNF2 family DNA-dependent ATPase [Replic | 99.55 | |
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 99.54 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 99.52 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 99.52 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 99.52 | |
| KOG4439 | 901 | consensus RNA polymerase II transcription terminat | 99.52 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 99.51 | |
| TIGR02562 | 1110 | cas3_yersinia CRISPR-associated helicase Cas3. The | 99.5 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 99.49 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 99.49 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 99.48 | |
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 99.43 | |
| KOG1015 | 1567 | consensus Transcription regulator XNP/ATRX, DEAD-b | 99.39 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 99.36 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 99.29 | |
| KOG0921 | 1282 | consensus Dosage compensation complex, subunit MLE | 99.25 | |
| COG0610 | 962 | Type I site-specific restriction-modification syst | 99.17 | |
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 99.16 | |
| KOG1960 | 531 | consensus Predicted RNA-binding protein, contains | 99.13 | |
| COG0653 | 822 | SecA Preprotein translocase subunit SecA (ATPase, | 99.03 | |
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 99.03 | |
| smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 98.93 | |
| smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 98.93 | |
| PF07517 | 266 | SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 | 98.83 | |
| KOG1016 | 1387 | consensus Predicted DNA helicase, DEAD-box superfa | 98.72 | |
| PRK15483 | 986 | type III restriction-modification system StyLTI en | 98.51 | |
| TIGR00596 | 814 | rad1 DNA repair protein (rad1). This family is bas | 98.3 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 98.21 | |
| KOG1001 | 674 | consensus Helicase-like transcription factor HLTF/ | 98.18 | |
| COG3587 | 985 | Restriction endonuclease [Defense mechanisms] | 98.18 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 98.07 | |
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 98.04 | |
| KOG1131 | 755 | consensus RNA polymerase II transcription initiati | 98.0 | |
| PF13872 | 303 | AAA_34: P-loop containing NTP hydrolase pore-1 | 97.98 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 97.89 | |
| TIGR00376 | 637 | DNA helicase, putative. The gene product may repre | 97.88 | |
| PF12340 | 229 | DUF3638: Protein of unknown function (DUF3638); In | 97.85 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 97.84 | |
| PF13307 | 167 | Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 | 97.82 | |
| KOG1802 | 935 | consensus RNA helicase nonsense mRNA reducing fact | 97.75 | |
| TIGR01447 | 586 | recD exodeoxyribonuclease V, alpha subunit. This f | 97.62 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 97.53 | |
| PRK10875 | 615 | recD exonuclease V subunit alpha; Provisional | 97.52 | |
| KOG1803 | 649 | consensus DNA helicase [Replication, recombination | 97.43 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 97.43 | |
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 97.41 | |
| COG3421 | 812 | Uncharacterized protein conserved in bacteria [Fun | 97.38 | |
| KOG1132 | 945 | consensus Helicase of the DEAD superfamily [Replic | 97.36 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 97.23 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 97.15 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.14 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.12 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.12 | |
| KOG1805 | 1100 | consensus DNA replication helicase [Replication, r | 97.11 | |
| PRK13889 | 988 | conjugal transfer relaxase TraA; Provisional | 97.04 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 97.03 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 97.02 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 97.01 | |
| PRK08181 | 269 | transposase; Validated | 97.01 | |
| PRK06526 | 254 | transposase; Provisional | 96.99 | |
| KOG0383 | 696 | consensus Predicted helicase [General function pre | 96.98 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 96.95 | |
| PRK13826 | 1102 | Dtr system oriT relaxase; Provisional | 96.94 | |
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 96.87 | |
| COG1875 | 436 | NYN ribonuclease and ATPase of PhoH family domains | 96.8 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 96.69 | |
| cd02395 | 120 | SF1_like-KH Splicing factor 1 (SF1) K homology RNA | 96.6 | |
| PF00580 | 315 | UvrD-helicase: UvrD/REP helicase N-terminal domain | 96.52 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 96.51 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 96.5 | |
| PF13871 | 278 | Helicase_C_4: Helicase_C-like | 96.45 | |
| smart00492 | 141 | HELICc3 helicase superfamily c-terminal domain. | 96.45 | |
| PF05970 | 364 | PIF1: PIF1-like helicase; InterPro: IPR010285 This | 96.44 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 96.43 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 96.41 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 96.3 | |
| PF14617 | 252 | CMS1: U3-containing 90S pre-ribosomal complex subu | 96.3 | |
| KOG0298 | 1394 | consensus DEAD box-containing helicase-like transc | 96.22 | |
| KOG1133 | 821 | consensus Helicase of the DEAD superfamily [Replic | 96.22 | |
| KOG0119 | 554 | consensus Splicing factor 1/branch point binding p | 96.2 | |
| PRK08116 | 268 | hypothetical protein; Validated | 96.19 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 96.12 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 96.09 | |
| TIGR01073 | 726 | pcrA ATP-dependent DNA helicase PcrA. Designed to | 96.08 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 96.05 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 96.05 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 96.03 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 96.02 | |
| TIGR01547 | 396 | phage_term_2 phage terminase, large subunit, PBSX | 95.99 | |
| smart00491 | 142 | HELICc2 helicase superfamily c-terminal domain. | 95.98 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 95.95 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 95.91 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 95.89 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 95.8 | |
| PF03354 | 477 | Terminase_1: Phage Terminase ; InterPro: IPR005021 | 95.77 | |
| PRK09183 | 259 | transposase/IS protein; Provisional | 95.77 | |
| PHA02533 | 534 | 17 large terminase protein; Provisional | 95.59 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 95.58 | |
| COG2805 | 353 | PilT Tfp pilus assembly protein, pilus retraction | 95.51 | |
| PRK08727 | 233 | hypothetical protein; Validated | 95.44 | |
| PRK14712 | 1623 | conjugal transfer nickase/helicase TraI; Provision | 95.4 | |
| PRK12377 | 248 | putative replication protein; Provisional | 95.39 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 95.31 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 95.28 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 95.28 | |
| PRK13709 | 1747 | conjugal transfer nickase/helicase TraI; Provision | 95.18 | |
| TIGR01075 | 715 | uvrD DNA helicase II. Designed to identify uvrD me | 95.12 | |
| PRK10919 | 672 | ATP-dependent DNA helicase Rep; Provisional | 95.11 | |
| PF05127 | 177 | Helicase_RecD: Helicase; InterPro: IPR007807 This | 95.06 | |
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 95.04 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 95.01 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 94.8 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 94.7 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 94.67 | |
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 94.65 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 94.63 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 94.62 | |
| COG1444 | 758 | Predicted P-loop ATPase fused to an acetyltransfer | 94.6 | |
| cd00561 | 159 | CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B | 94.56 | |
| PTZ00293 | 211 | thymidine kinase; Provisional | 94.56 | |
| PRK12422 | 445 | chromosomal replication initiation protein; Provis | 94.53 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 94.51 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 94.49 | |
| TIGR01074 | 664 | rep ATP-dependent DNA helicase Rep. Designed to id | 94.48 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 94.46 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 94.45 | |
| PRK11054 | 684 | helD DNA helicase IV; Provisional | 94.43 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 94.43 | |
| PHA02544 | 316 | 44 clamp loader, small subunit; Provisional | 94.42 | |
| PRK11773 | 721 | uvrD DNA-dependent helicase II; Provisional | 94.34 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 94.27 | |
| KOG0989 | 346 | consensus Replication factor C, subunit RFC4 [Repl | 94.22 | |
| PRK05986 | 191 | cob(I)alamin adenolsyltransferase/cobinamide ATP-d | 94.17 | |
| PHA03333 | 752 | putative ATPase subunit of terminase; Provisional | 94.17 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 94.14 | |
| COG3973 | 747 | Superfamily I DNA and RNA helicases [General funct | 94.09 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 94.09 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 94.08 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 94.05 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 93.99 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 93.94 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 93.92 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 93.87 | |
| TIGR00708 | 173 | cobA cob(I)alamin adenosyltransferase. Alternate n | 93.86 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 93.86 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 93.83 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 93.8 | |
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the | 93.77 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 93.76 | |
| PRK08939 | 306 | primosomal protein DnaI; Reviewed | 93.73 | |
| TIGR02640 | 262 | gas_vesic_GvpN gas vesicle protein GvpN. Members o | 93.72 | |
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 93.65 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 93.62 | |
| TIGR02785 | 1232 | addA_Gpos recombination helicase AddA, Firmicutes | 93.56 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 93.44 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 93.41 | |
| KOG0670 | 752 | consensus U4/U6-associated splicing factor PRP4 [R | 93.39 | |
| TIGR03877 | 237 | thermo_KaiC_1 KaiC domain protein, Ph0284 family. | 93.33 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 93.29 | |
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 93.24 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 93.2 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 93.19 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 93.18 | |
| PRK13833 | 323 | conjugal transfer protein TrbB; Provisional | 93.18 | |
| COG1435 | 201 | Tdk Thymidine kinase [Nucleotide transport and met | 93.15 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 93.14 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 93.02 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 92.91 | |
| PRK11331 | 459 | 5-methylcytosine-specific restriction enzyme subun | 92.82 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 92.78 | |
| PRK13342 | 413 | recombination factor protein RarA; Reviewed | 92.75 | |
| PF05496 | 233 | RuvB_N: Holliday junction DNA helicase ruvB N-term | 92.65 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 92.65 | |
| PRK13894 | 319 | conjugal transfer ATPase TrbB; Provisional | 92.6 | |
| PRK13341 | 725 | recombination factor protein RarA/unknown domain f | 92.6 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 92.6 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 92.52 | |
| TIGR03689 | 512 | pup_AAA proteasome ATPase. In the Actinobacteria, | 92.47 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 92.46 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 92.38 | |
| PF06745 | 226 | KaiC: KaiC; InterPro: IPR014774 This entry represe | 92.38 | |
| COG2109 | 198 | BtuR ATP:corrinoid adenosyltransferase [Coenzyme m | 92.33 | |
| PF13173 | 128 | AAA_14: AAA domain | 92.32 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 92.29 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 92.22 | |
| PRK09111 | 598 | DNA polymerase III subunits gamma and tau; Validat | 92.13 | |
| PF03969 | 362 | AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 | 92.09 | |
| TIGR02782 | 299 | TrbB_P P-type conjugative transfer ATPase TrbB. Th | 91.96 | |
| PRK14957 | 546 | DNA polymerase III subunits gamma and tau; Provisi | 91.92 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 91.91 | |
| PRK09112 | 351 | DNA polymerase III subunit delta'; Validated | 91.91 | |
| PF05707 | 193 | Zot: Zonular occludens toxin (Zot); InterPro: IPR0 | 91.87 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 91.81 | |
| PRK07471 | 365 | DNA polymerase III subunit delta'; Validated | 91.79 | |
| PRK11823 | 446 | DNA repair protein RadA; Provisional | 91.77 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 91.73 | |
| cd00984 | 242 | DnaB_C DnaB helicase C terminal domain. The hexame | 91.72 | |
| COG4626 | 546 | Phage terminase-like protein, large subunit [Gener | 91.71 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 91.7 | |
| PF01695 | 178 | IstB_IS21: IstB-like ATP binding protein; InterPro | 91.67 | |
| PRK14951 | 618 | DNA polymerase III subunits gamma and tau; Provisi | 91.59 | |
| PRK14959 | 624 | DNA polymerase III subunits gamma and tau; Provisi | 91.55 | |
| PRK14969 | 527 | DNA polymerase III subunits gamma and tau; Provisi | 91.47 | |
| PHA03368 | 738 | DNA packaging terminase subunit 1; Provisional | 91.46 | |
| PF05876 | 557 | Terminase_GpA: Phage terminase large subunit (GpA) | 91.45 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 91.43 | |
| PF02572 | 172 | CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase | 91.41 | |
| TIGR03878 | 259 | thermo_KaiC_2 KaiC domain protein, AF_0795 family. | 91.4 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 91.31 | |
| PRK14962 | 472 | DNA polymerase III subunits gamma and tau; Provisi | 91.3 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 91.19 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 91.16 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 91.15 | |
| PF05872 | 502 | DUF853: Bacterial protein of unknown function (DUF | 91.13 | |
| COG0470 | 325 | HolB ATPase involved in DNA replication [DNA repli | 91.06 | |
| PF04665 | 241 | Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 | 91.02 | |
| PRK07940 | 394 | DNA polymerase III subunit delta'; Validated | 91.02 | |
| PRK14952 | 584 | DNA polymerase III subunits gamma and tau; Provisi | 91.0 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 90.97 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 90.96 | |
| KOG0738 | 491 | consensus AAA+-type ATPase [Posttranslational modi | 90.95 | |
| CHL00181 | 287 | cbbX CbbX; Provisional | 90.86 | |
| PRK05563 | 559 | DNA polymerase III subunits gamma and tau; Validat | 90.84 | |
| KOG2028 | 554 | consensus ATPase related to the helicase subunit o | 90.74 | |
| PF13177 | 162 | DNA_pol3_delta2: DNA polymerase III, delta subunit | 90.72 | |
| PRK14965 | 576 | DNA polymerase III subunits gamma and tau; Provisi | 90.68 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 90.63 | |
| KOG1513 | 1300 | consensus Nuclear helicase MOP-3/SNO (DEAD-box sup | 90.46 | |
| PRK04328 | 249 | hypothetical protein; Provisional | 90.4 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 90.34 | |
| PRK06964 | 342 | DNA polymerase III subunit delta'; Validated | 90.21 | |
| PRK14950 | 585 | DNA polymerase III subunits gamma and tau; Provisi | 90.18 | |
| KOG2036 | 1011 | consensus Predicted P-loop ATPase fused to an acet | 90.15 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 90.15 | |
| PF05729 | 166 | NACHT: NACHT domain | 90.12 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 90.01 | |
| KOG1133 | 821 | consensus Helicase of the DEAD superfamily [Replic | 90.0 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 89.97 | |
| PTZ00454 | 398 | 26S protease regulatory subunit 6B-like protein; P | 89.93 | |
| KOG2543 | 438 | consensus Origin recognition complex, subunit 5 [R | 89.93 | |
| TIGR02525 | 372 | plasmid_TraJ plasmid transfer ATPase TraJ. Members | 89.83 | |
| KOG0670 | 752 | consensus U4/U6-associated splicing factor PRP4 [R | 89.79 | |
| PRK08699 | 325 | DNA polymerase III subunit delta'; Validated | 89.76 | |
| TIGR02880 | 284 | cbbX_cfxQ probable Rubsico expression protein CbbX | 89.71 | |
| PRK14955 | 397 | DNA polymerase III subunits gamma and tau; Provisi | 89.71 | |
| PF00265 | 176 | TK: Thymidine kinase; InterPro: IPR001267 Thymidin | 89.67 | |
| PF03237 | 384 | Terminase_6: Terminase-like family; InterPro: IPR0 | 89.63 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 89.61 | |
| COG4962 | 355 | CpaF Flp pilus assembly protein, ATPase CpaF [Intr | 89.56 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 89.49 | |
| PHA00729 | 226 | NTP-binding motif containing protein | 89.32 | |
| PRK13851 | 344 | type IV secretion system protein VirB11; Provision | 89.31 | |
| PHA00350 | 399 | putative assembly protein | 89.28 | |
| TIGR03880 | 224 | KaiC_arch_3 KaiC domain protein, AF_0351 family. T | 89.23 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 89.21 | |
| PRK13900 | 332 | type IV secretion system ATPase VirB11; Provisiona | 89.18 | |
| PF10593 | 239 | Z1: Z1 domain; InterPro: IPR018310 This entry repr | 89.17 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 89.11 | |
| COG2804 | 500 | PulE Type II secretory pathway, ATPase PulE/Tfp pi | 89.09 | |
| PRK06871 | 325 | DNA polymerase III subunit delta'; Validated | 89.04 | |
| PRK07414 | 178 | cob(I)yrinic acid a,c-diamide adenosyltransferase; | 88.91 | |
| KOG0339 | 731 | consensus ATP-dependent RNA helicase [RNA processi | 88.66 | |
| TIGR00635 | 305 | ruvB Holliday junction DNA helicase, RuvB subunit. | 88.65 | |
| PF01637 | 234 | Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 | 88.54 | |
| KOG0744 | 423 | consensus AAA+-type ATPase [Posttranslational modi | 88.37 | |
| COG3972 | 660 | Superfamily I DNA and RNA helicases [General funct | 88.35 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 88.26 | |
| TIGR02237 | 209 | recomb_radB DNA repair and recombination protein R | 88.11 | |
| PRK13764 | 602 | ATPase; Provisional | 88.03 | |
| PRK14948 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 87.99 | |
| KOG0733 | 802 | consensus Nuclear AAA ATPase (VCP subfamily) [Post | 87.87 | |
| PRK14954 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 87.85 | |
| PRK05896 | 605 | DNA polymerase III subunits gamma and tau; Validat | 87.82 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 87.79 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 87.75 | |
| KOG2227 | 529 | consensus Pre-initiation complex, subunit CDC6, AA | 87.72 | |
| PRK03992 | 389 | proteasome-activating nucleotidase; Provisional | 87.7 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 87.67 | |
| PF12846 | 304 | AAA_10: AAA-like domain | 87.55 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 87.45 | |
| TIGR00678 | 188 | holB DNA polymerase III, delta' subunit. At positi | 87.43 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 87.41 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 87.4 | |
| PRK07993 | 334 | DNA polymerase III subunit delta'; Validated | 87.39 | |
| KOG0739 | 439 | consensus AAA+-type ATPase [Posttranslational modi | 87.32 | |
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 87.08 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 86.92 | |
| KOG0701 | 1606 | consensus dsRNA-specific nuclease Dicer and relate | 86.82 | |
| KOG0740 | 428 | consensus AAA+-type ATPase [Posttranslational modi | 86.79 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 86.79 | |
| KOG0741 | 744 | consensus AAA+-type ATPase [Posttranslational modi | 86.71 | |
| TIGR02012 | 321 | tigrfam_recA protein RecA. This model describes or | 86.61 | |
| PRK06090 | 319 | DNA polymerase III subunit delta'; Validated | 86.59 | |
| COG2255 | 332 | RuvB Holliday junction resolvasome, helicase subun | 86.56 | |
| PRK07133 | 725 | DNA polymerase III subunits gamma and tau; Validat | 86.5 | |
| PRK08451 | 535 | DNA polymerase III subunits gamma and tau; Validat | 86.44 | |
| COG5008 | 375 | PilU Tfp pilus assembly protein, ATPase PilU [Cell | 86.33 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 86.29 | |
| PF00013 | 60 | KH_1: KH domain syndrome, contains KH motifs.; Int | 86.15 | |
| PF01443 | 234 | Viral_helicase1: Viral (Superfamily 1) RNA helicas | 86.1 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 86.1 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 85.89 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 85.87 | |
| KOG0742 | 630 | consensus AAA+-type ATPase [Posttranslational modi | 85.77 | |
| PF06733 | 174 | DEAD_2: DEAD_2; InterPro: IPR010614 This represent | 85.75 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 85.7 | |
| KOG0780 | 483 | consensus Signal recognition particle, subunit Srp | 85.68 | |
| PF02606 | 326 | LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPr | 85.62 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 85.57 | |
| PRK14953 | 486 | DNA polymerase III subunits gamma and tau; Provisi | 85.55 | |
| PRK00440 | 319 | rfc replication factor C small subunit; Reviewed | 85.49 | |
| PRK05973 | 237 | replicative DNA helicase; Provisional | 85.36 | |
| PRK14971 | 614 | DNA polymerase III subunits gamma and tau; Provisi | 85.34 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 85.3 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 85.26 | |
| PF02534 | 469 | T4SS-DNA_transf: Type IV secretory system Conjugat | 85.23 | |
| COG2874 | 235 | FlaH Predicted ATPases involved in biogenesis of a | 85.19 | |
| PF03266 | 168 | NTPase_1: NTPase; InterPro: IPR004948 This entry r | 85.17 | |
| PHA00012 | 361 | I assembly protein | 85.16 | |
| PRK07413 | 382 | hypothetical protein; Validated | 84.97 | |
| KOG0298 | 1394 | consensus DEAD box-containing helicase-like transc | 84.91 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 84.91 | |
| KOG1132 | 945 | consensus Helicase of the DEAD superfamily [Replic | 84.85 | |
| PRK00080 | 328 | ruvB Holliday junction DNA helicase RuvB; Reviewed | 84.59 | |
| cd00983 | 325 | recA RecA is a bacterial enzyme which has roles in | 84.43 | |
| PF02456 | 369 | Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR | 84.22 | |
| COG0630 | 312 | VirB11 Type IV secretory pathway, VirB11 component | 84.1 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 84.04 | |
| COG1660 | 286 | Predicted P-loop-containing kinase [General functi | 83.94 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 83.88 | |
| cd01126 | 384 | TraG_VirD4 The TraG/TraD/VirD4 family are bacteria | 83.8 | |
| KOG0347 | 731 | consensus RNA helicase [RNA processing and modific | 83.78 | |
| KOG1513 | 1300 | consensus Nuclear helicase MOP-3/SNO (DEAD-box sup | 83.77 | |
| COG3598 | 402 | RepA RecA-family ATPase [DNA replication, recombin | 83.76 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 83.6 | |
| PRK05342 | 412 | clpX ATP-dependent protease ATP-binding subunit Cl | 83.58 | |
| PRK09354 | 349 | recA recombinase A; Provisional | 83.54 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 83.52 | |
| PRK06647 | 563 | DNA polymerase III subunits gamma and tau; Validat | 83.47 | |
| cd02393 | 61 | PNPase_KH Polynucleotide phosphorylase (PNPase) K | 83.47 | |
| COG1219 | 408 | ClpX ATP-dependent protease Clp, ATPase subunit [P | 83.39 | |
| COG0378 | 202 | HypB Ni2+-binding GTPase involved in regulation of | 83.29 | |
| KOG0991 | 333 | consensus Replication factor C, subunit RFC2 [Repl | 83.26 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 83.24 | |
| PF03668 | 284 | ATP_bind_2: P-loop ATPase protein family; InterPro | 83.13 | |
| TIGR03600 | 421 | phage_DnaB phage replicative helicase, DnaB family | 83.08 | |
| COG1485 | 367 | Predicted ATPase [General function prediction only | 83.07 | |
| TIGR00665 | 434 | DnaB replicative DNA helicase. This model describe | 83.04 | |
| PRK06305 | 451 | DNA polymerase III subunits gamma and tau; Validat | 82.97 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 82.93 | |
| KOG0745 | 564 | consensus Putative ATP-dependent Clp-type protease | 82.78 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 82.61 | |
| PF14516 | 331 | AAA_35: AAA-like domain | 82.58 |
| >KOG0334 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-122 Score=1089.58 Aligned_cols=845 Identities=54% Similarity=0.821 Sum_probs=689.1
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHhhhcCCCCccCCcCCCCcccCcCCCCCccCCcCC-CCCCCCCCCCCCCC
Q 001261 203 DEQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGDANVEEPKAGRNWTLDREDSDDEEVPQTG-KSETDMDADEEPKP 281 (1112)
Q Consensus 203 ~~~r~~~ee~~~r~~~~~e~~~~~~~~ee~~~~~~~~~~~~~~~~~r~~~~~~e~~ed~~~~~~~-~~e~~~~~~~~~~~ 281 (1112)
..+..+.++.++++++.+.|.+..++++.......-............|++.+++++++.+|... .++.+. ..
T Consensus 141 ~~~~~l~e~l~~rr~~~e~~~e~k~k~e~~~~~t~~~~~~~~~~s~k~~~l~~~~d~~~~~~~~~~~s~q~~------~~ 214 (997)
T KOG0334|consen 141 SIQARLAEELRKRRERVEKWKELKRKEEKEKVVTLMLNVSDEKNSKKLWELEDEDDDDSANPAELGWSEQDV------PE 214 (997)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhcchHHhhhhhhcccccccccccceEecCCCCccccCccccchhhccc------hh
Confidence 45677889999999999999998887776666554444555667788899999988777664321 111100 00
Q ss_pred CCCcccccccccCCCCCCCcccccCCCCCCCCCchHHHHhccChhhHHhhhccCCCCCCC-CCccccccccccCCCCCCC
Q 001261 282 SENQVGDAMLVDSDGGSAAPALQIGAAEDEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTD-GNNVESKKMDRKGDRRSNG 360 (1112)
Q Consensus 282 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~d~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~k~~~~~~~~~~~~ 360 (1112)
.|.+ | +. ...++++||+|+||..+..+.+... .+...+ ... ...+
T Consensus 215 ~~~~----p---------~~-----~~~dd~~d~ld~~m~~~~~~~~~~~----~~~~~~~~~~------------~~~s 260 (997)
T KOG0334|consen 215 LMKA----P---------NL-----MLVDDEEDPLDAFMEQMVGKVLAKF----SNSSHSKAQV------------VEVS 260 (997)
T ss_pred hccC----c---------cc-----cccccccchHHHHHHHHHHHHHHHh----cCCCcccccc------------cccc
Confidence 1100 0 00 2345679999999999743333221 111111 001 1112
Q ss_pred CCCCcccc-cccCCCCCCCCCCCccCCCcCCCCCCCCcchHHHHHHHHHhhhccCCcCCCcccccccccccccccchHHh
Q 001261 361 EQPKKSSN-KSLGRIIPGEDSDSDYGDLENDEKPLEDEDDDEFMKRVKKTKAEKLSIVDHSKIDYQPFRKNFYIEVKEIA 439 (1112)
Q Consensus 361 ~~~~~~~~-~~~~~~~~~~d~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~k~f~~~~~~~~ 439 (1112)
.+..++.. +..+.+++..+...|..+.+.+++ ++...+.+..+....+.+..++|+.+.|.||+++||++..++.
T Consensus 261 ~~~~~~~~~~~~g~v~e~~~~~~D~~e~~~~~~----~d~~~~~~~~~~~~~~~~~~~~~S~~~~epFRknfy~e~~di~ 336 (997)
T KOG0334|consen 261 KDARKGLNPKLSGFVIEPGLVNGDNEEVELNGS----FDNRNAAKNMNLKAKKNLIQVDHSKISYEPFRKNFYIEVRDIK 336 (997)
T ss_pred hhhhccCCccccceeccCCcCCcchhhhhhccc----cchHHHHHHhccccccceeecccccccchhhhhcccccchhHH
Confidence 22333333 255666766655655544444333 4455666666666666889999999999999999999999999
Q ss_pred hcCHHHHHHHHhhcC-ceeccCCCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHH
Q 001261 440 RMTPEEVSAYRKQLE-LKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKT 518 (1112)
Q Consensus 440 ~~~~~~~~~~r~~~~-~~~~~~~~p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT 518 (1112)
.|+.+++..|+..+. |.+.|..||.||++|.++||+..|+..|+++||.+|||||.+|||+||+|+|||++|.||||||
T Consensus 337 ~ms~~eV~~yr~~l~~i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT 416 (997)
T KOG0334|consen 337 RMSAAEVDEYRCELDGIKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKT 416 (997)
T ss_pred HHHHHHHHHhhcCccceeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccc
Confidence 999999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCc
Q 001261 519 LAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTP 598 (1112)
Q Consensus 519 ~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp 598 (1112)
++|+|||+.|++.|++...+.||.+|||+|||+||.||+.++.+|++.+++.++|+|||..+..++..+++|+.|+||||
T Consensus 417 ~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tp 496 (997)
T KOG0334|consen 417 LAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTP 496 (997)
T ss_pred hhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEE
Q 001261 599 GRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQV 678 (1112)
Q Consensus 599 ~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i 678 (1112)
|+++++++.+.+++++|.++.|||+||||+|++|||.|+++.|+.++++++|+++||||||..++.++...++.|+.+++
T Consensus 497 GRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv 576 (997)
T KOG0334|consen 497 GRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIV 576 (997)
T ss_pred chhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccCCccEEEEecc-cchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHH
Q 001261 679 GGRSVVNKDITQLVEVRP-ESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTI 757 (1112)
Q Consensus 679 ~~~~~~~~~i~q~~~~~~-~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~ 757 (1112)
++.++++..+.|.+.++. ...||..|+++|..+...+++||||.++..|+.|...|.+.||+|..|||+.++.+|..++
T Consensus 577 ~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti 656 (997)
T KOG0334|consen 577 GGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTI 656 (997)
T ss_pred ccceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHH
Confidence 999999999999999998 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhcc
Q 001261 758 SDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSE 837 (1112)
Q Consensus 758 ~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~ 837 (1112)
.+|++|.+.+||||+++++|||++.+.+||||++|+++++|+||+|||||+|++|+||+|+++.+..++.+|+++|..++
T Consensus 657 ~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~ 736 (997)
T KOG0334|consen 657 EDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELSK 736 (997)
T ss_pred HHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHhhhhhcccCCC-CCCCCcCCChhHHHHHHHHHHHHHHHcCCCCCCCCCCchhhhhhccCC-C
Q 001261 838 QVVPDDLKALADSFMAKVNQGLEQAHGTG-YGGSGFKFNEEEDEKRKAAKKAQAKEYGFEEDKSDSDDEDEGIRKAGG-D 915 (1112)
Q Consensus 838 ~~vp~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~g~~~~~~~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~ 915 (1112)
+.+|..|+.|+..|+.+.+.+....+++| |+|+||.|.+...+.++..+..+.+.+|+.+...+++.+.+....++. .
T Consensus 737 ~~~P~~l~~l~~~f~~~~~~~~s~~~~~Gg~~G~g~~~~~~~~~~~~~~ke~q~~~~g~~~~d~e~d~~~~~~~~~~~~~ 816 (997)
T KOG0334|consen 737 QPVPKLLQALSERFKAKQKAGGSQVHGGGGFGGKGLKFDEVEEELRQERKEAQRKDLGLKEGDNESDIEVDNSDKASQPR 816 (997)
T ss_pred CCCchHHHHHHHHHHhhhhcccccccccCcccCCcccccHHHHHHHHHHhhccccCcCCCCCCcccccccccchhhcccc
Confidence 99999999999999999999977777766 999999999998899999999999999998765555444332222211 1
Q ss_pred chhhhHHHHHHHHHHhhhhccCCCCCchhhhcCCCCCCCCCCCCccCcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHHH
Q 001261 916 ISQQDALAKISAIAAASKASASMPTPISAAQLLPNAGLPISLPGVLGLSIPGAAPTVSATGLPVVPNDGAARAAALAAAI 995 (1112)
Q Consensus 916 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~a~~ 995 (1112)
.+.+.... . ... +.+..+.+.+...+...+++.+.+...++. ..+ ....+...|-..|..+
T Consensus 817 ~s~~~~~~-------~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~r~~a~~~A~~~ 877 (997)
T KOG0334|consen 817 ESIQNPTF-------L---QVE-AESKTQEKTLLLGGELNAARPMVPYPVPGT-------AEF-QVIAARDDAEIKALLL 877 (997)
T ss_pred ccccCccc-------c---ccc-ccccchhhhhhccccccccccccccccccc-------ccc-cccchhhhHHHHHhhc
Confidence 11111100 0 000 001112222221111111121111111111 000 0011222233333444
Q ss_pred HHhhhHHHhhhccCCcC-----eEEEEEecCCCccchhhcccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEE
Q 001261 996 NLQHNLAKIQADAMPEH-----YEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLF 1070 (1112)
Q Consensus 996 ~~~~~~~~~~~~~~~~~-----~~~~~~INd~pq~~R~~~t~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ 1070 (1112)
|++++. ......++. |.++++||||||.+||++|+++++..|.+.|+++|||||+|||||+.|++||++|||+
T Consensus 878 ~~~l~~--~~~~~s~d~~~~~~y~~~~~inD~Pq~~r~~vt~~~~L~~i~e~~~~~it~rg~f~~~gk~p~~gErklyl~ 955 (997)
T KOG0334|consen 878 NAQLNY--QLIDTSSDLILQFIYEAELEINDFPQNARWRVTYKEALLRISEPTAAGITTRGKFNPPGKEPKPGERKLYLL 955 (997)
T ss_pred ccccee--ecccCCccccccceeeeeccccccchhcceeeechhhhhhccCccccceeeccccCCCCCCCCCcchhhhhh
Confidence 444432 222333444 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCceeeC
Q 001261 1071 IEGPTEQSVKRAKAELKRVLEDFTNQALSLPGGAQPGRYSVV 1112 (1112)
Q Consensus 1071 ie~~~~~~v~~A~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~ 1112 (1112)
|||+++..|++|+.+|+++|++++.+++.+.+...+|||.||
T Consensus 956 ve~~~e~~vqra~~e~~r~l~e~~~~~~~~~~~~~~~~y~~~ 997 (997)
T KOG0334|consen 956 VEGPDELSVQRAIEELERLLEEEVVNLFSSLQPSCKGRYLVV 997 (997)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHhccCCCccceeecC
Confidence 999999999999999999999999999887665559999997
|
|
| >KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-85 Score=713.82 Aligned_cols=440 Identities=49% Similarity=0.810 Sum_probs=426.8
Q ss_pred HHhhhccCCcCCCcccccccccccccccchHHhhcCHHHHHHHHhhcCceeccCCCCCcccccccCCCCHHHHHHHHHCC
Q 001261 407 KKTKAEKLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLN 486 (1112)
Q Consensus 407 ~~~k~~~~~~~~~~~~~~~~~~k~f~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~p~pi~~~~~~~L~~~l~~~l~~~~ 486 (1112)
.+++.+.+++++|++++|.||.++||.++..|..|+..++..++..+++++.|..+|+|+++|.++|+...|+..+.+..
T Consensus 163 ~kr~idpl~~idhs~i~y~p~~kdfy~e~esI~gl~~~d~~~~r~~Lnlrv~g~s~~rpvtsfeh~gfDkqLm~airk~E 242 (731)
T KOG0339|consen 163 DKRQIDPLPPIDHSEIDYEPFNKDFYEEHESIEGLTKMDVIDLRLTLNLRVSGSSPPRPVTSFEHFGFDKQLMTAIRKSE 242 (731)
T ss_pred ccccCCCCCCcchhhccccccccccccChhhhhccccccchhhHhhhcceeccCCCCCCcchhhhcCchHHHHHHHhhhh
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhh
Q 001261 487 YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKV 566 (1112)
Q Consensus 487 ~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~ 566 (1112)
|.+|||||+++||..++|+|||.+|.||||||.+|++|++-||++++.+..++||.+|||||||+||.||+.++++|++.
T Consensus 243 y~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ 322 (731)
T KOG0339|consen 243 YEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKA 322 (731)
T ss_pred cccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcC
Q 001261 567 MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646 (1112)
Q Consensus 567 ~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~ 646 (1112)
+|++++|+|||.+..+|+..|+.|+.|||||||+|++++.... ++|.+++|||||||++|++|||.+++..|..+++
T Consensus 323 ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKa---tn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hir 399 (731)
T KOG0339|consen 323 YGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKA---TNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIR 399 (731)
T ss_pred ccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhc---ccceeeeEEEEechhhhhccccHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999998743 7899999999999999999999999999999999
Q ss_pred CCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEeccc-chhHHHHHHHHHhhhcCCeEEEEeCCHH
Q 001261 647 PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPE-SDRFLRLLELLGEWYEKGKILIFVHSQE 725 (1112)
Q Consensus 647 ~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~-~~k~~~ll~~l~~~~~~~~vLIF~~s~~ 725 (1112)
+++|+|+|||||+..++.+++.+|.+|+.+..+.....+..|+|.+.+++. ..|+.+|+..|..+...|++|||+....
T Consensus 400 pdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~ 479 (731)
T KOG0339|consen 400 PDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKA 479 (731)
T ss_pred CcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccC
Confidence 999999999999999999999999999999999888899999999988765 5789999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhccc
Q 001261 726 KCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRT 805 (1112)
Q Consensus 726 ~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~ 805 (1112)
.++.++..|.-.+++|..+||+|+|.+|..+|..|+.+...|||||+++++||||+.+.+|||||+-.+++.|+|||||+
T Consensus 480 ~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrt 559 (731)
T KOG0339|consen 480 DAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRT 559 (731)
T ss_pred CHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhHHHHHH
Q 001261 806 GRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALAD 849 (1112)
Q Consensus 806 gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~~~~ 849 (1112)
||+|.+|.+|+|+|+.|..++..|++.|+-.+|.||+.|.+|+-
T Consensus 560 gRag~kGvayTlvTeKDa~fAG~LVnnLe~agQnVP~~l~dlam 603 (731)
T KOG0339|consen 560 GRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAGQNVPDELMDLAM 603 (731)
T ss_pred ccccccceeeEEechhhHHHhhHHHHHHhhccccCChHHHHHHh
Confidence 99999999999999999999999999999999999999977663
|
|
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-77 Score=683.79 Aligned_cols=426 Identities=47% Similarity=0.855 Sum_probs=394.1
Q ss_pred cccccccccccccchHHhhcCHHHHHHHHhhcCceeccCC-CCCcccccc-----------------------------c
Q 001261 422 IDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKD-VPKPIKTWH-----------------------------Q 471 (1112)
Q Consensus 422 ~~~~~~~k~f~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~p~pi~~~~-----------------------------~ 471 (1112)
.++.+|.++||.+.+....+...+...++....+.+.+.. +|.|+.+|. .
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 95 (519)
T KOG0331|consen 16 LDLSPFDKNFYKEHPSVKKRGSAEVERKRKKNEITVKGGDSVPKPVKSFEESGFPAKVLEEIPKLSRSSGESDSSAAFQE 95 (519)
T ss_pred cccCcccccccccccccccccccccccccCcceeeccCCCCCCCCccchhcccCCccccccccccccccccCCcchhhhc
Confidence 4677889999998877777777777778777777777655 676665544 4
Q ss_pred CCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhc-CCCCCCCCCCcEEEEccch
Q 001261 472 TGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKD-QPPVAAGDGPVGLIMAPTR 550 (1112)
Q Consensus 472 ~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~-~~~~~~~~~~~~LIl~Ptr 550 (1112)
++|+..++..|+..||..|||||+++||.+|+|+|+|++|.||||||++|++|++.|+.. +.....+.+|++|||+|||
T Consensus 96 ~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTR 175 (519)
T KOG0331|consen 96 LGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTR 175 (519)
T ss_pred ccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcH
Confidence 566677777788999999999999999999999999999999999999999999999998 6777888899999999999
Q ss_pred hHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhh
Q 001261 551 ELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF 630 (1112)
Q Consensus 551 eLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~ 630 (1112)
|||.|+..++..|+..++++++|+|||.+...|+..|.+|++|+|+|||+|++++..+. .+|++++|+||||||+|+
T Consensus 176 ELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~---~~l~~v~ylVLDEADrMl 252 (519)
T KOG0331|consen 176 ELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGS---LNLSRVTYLVLDEADRML 252 (519)
T ss_pred HHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCC---ccccceeEEEeccHHhhh
Confidence 99999999999999999999999999999999999999999999999999999998754 789999999999999999
Q ss_pred ccCChhHHHHHHHhc-CCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcc--cccCCccEEEEecccchhHHHHHHH
Q 001261 631 DMGFEPQITRIVQNI-RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRS--VVNKDITQLVEVRPESDRFLRLLEL 707 (1112)
Q Consensus 631 ~~gf~~~i~~il~~~-~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~--~~~~~i~q~~~~~~~~~k~~~ll~~ 707 (1112)
+|||.+++..|+..+ ++++|+|++|||||..+..|+..|+.+|+.+.++... ..+.+|.|++.+++...|...|..+
T Consensus 253 dmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~l 332 (519)
T KOG0331|consen 253 DMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKL 332 (519)
T ss_pred ccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHH
Confidence 999999999999999 7788999999999999999999999999999998664 6778899999999988999999999
Q ss_pred HHhhh--cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccE
Q 001261 708 LGEWY--EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELEL 785 (1112)
Q Consensus 708 l~~~~--~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~ 785 (1112)
|..+. ..+++||||+|+..|+.|...|...++++..|||+++|.+|..+|+.|++|.+.|||||++|+||||||+|++
T Consensus 333 L~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~l 412 (519)
T KOG0331|consen 333 LEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDL 412 (519)
T ss_pred HHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccE
Confidence 98876 4579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhHHHHHHH
Q 001261 786 VINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADS 850 (1112)
Q Consensus 786 VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~~~~~ 850 (1112)
|||||+|.+.++|+||+|||||+|+.|.+++|++..+...+..+++.|....+.||+.|..+...
T Consensus 413 VInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l~~~~~~ 477 (519)
T KOG0331|consen 413 VINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPPDLLEYARV 477 (519)
T ss_pred EEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999988776543
|
|
| >KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-75 Score=618.86 Aligned_cols=437 Identities=42% Similarity=0.710 Sum_probs=403.1
Q ss_pred CcCCCcccccccccccccccchHHhhcCHHHHHHHHhhcC-ceec------cCCCCCccccccc-CCCCHHHHHHHHHCC
Q 001261 415 SIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLE-LKIH------GKDVPKPIKTWHQ-TGLTSKIMETIRKLN 486 (1112)
Q Consensus 415 ~~~~~~~~~~~~~~k~f~~~~~~~~~~~~~~~~~~r~~~~-~~~~------~~~~p~pi~~~~~-~~L~~~l~~~l~~~~ 486 (1112)
......|...+|+.++||.++.+.+.|++.++..++++.. |.+. ..++|+|..+|.+ |.-.+.++..|++.|
T Consensus 160 ~~e~~kW~~lpPi~knfYke~~e~s~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~G 239 (629)
T KOG0336|consen 160 KDEKFKWAKLPPIKKNFYKESNETSNLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTG 239 (629)
T ss_pred hhhhcccccCCchhhhhhhcCchhccCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhcc
Confidence 3345567888999999999999999999999999998765 5533 2357999999987 678899999999999
Q ss_pred CCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCC-CCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001261 487 YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPV-AAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 487 ~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~-~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
|.+|||||.||||.+|+|.|+|++|.||+|||++||+|.+-|+..++.. ....+|.+|+++||++||.|+.-++.++.
T Consensus 240 FqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kys- 318 (629)
T KOG0336|consen 240 FQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYS- 318 (629)
T ss_pred CCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhh-
Confidence 9999999999999999999999999999999999999999999887643 34468999999999999999988888764
Q ss_pred hcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhc
Q 001261 566 VMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI 645 (1112)
Q Consensus 566 ~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~ 645 (1112)
+-|+..+|+|||.+..+|+..|++|.+|+|+|||+|.++...+ +.+|..++||||||||+|+||||.+++.+|+-.+
T Consensus 319 yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n---~i~l~siTYlVlDEADrMLDMgFEpqIrkilldi 395 (629)
T KOG0336|consen 319 YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDN---VINLASITYLVLDEADRMLDMGFEPQIRKILLDI 395 (629)
T ss_pred hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcC---eeeeeeeEEEEecchhhhhcccccHHHHHHhhhc
Confidence 4689999999999999999999999999999999999998764 4789999999999999999999999999999999
Q ss_pred CCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccc-cCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCH
Q 001261 646 RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVV-NKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQ 724 (1112)
Q Consensus 646 ~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~-~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~ 724 (1112)
+|++|++++|||||..+..|+..|+.+|+.+.++....+ ...+.|.+.+..+..|+..+-.++....+..++||||..+
T Consensus 396 RPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K 475 (629)
T KOG0336|consen 396 RPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRK 475 (629)
T ss_pred CCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEech
Confidence 999999999999999999999999999999999887654 5568888887888888877777777777788999999999
Q ss_pred HHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcc
Q 001261 725 EKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGR 804 (1112)
Q Consensus 725 ~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR 804 (1112)
..|+.|...|.-.|+.+..|||+-.|.+|+..+..|++|.++|||||++++|||||++|++|+|||+|.+++.|+||+||
T Consensus 476 ~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGr 555 (629)
T KOG0336|consen 476 VMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGR 555 (629)
T ss_pred hhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhHHHHHHHHHHHH
Q 001261 805 TGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAKV 855 (1112)
Q Consensus 805 ~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~~~~~~~~~~ 855 (1112)
+||+|++|.+++|++.+|...+..|++.|..++|.||++|..|++.|..+.
T Consensus 556 tGRaGr~G~sis~lt~~D~~~a~eLI~ILe~aeQevPdeL~~mAeryk~~q 606 (629)
T KOG0336|consen 556 TGRAGRTGTSISFLTRNDWSMAEELIQILERAEQEVPDELVRMAERYKLKQ 606 (629)
T ss_pred cccCCCCcceEEEEehhhHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999998774
|
|
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-74 Score=627.50 Aligned_cols=407 Identities=42% Similarity=0.727 Sum_probs=382.9
Q ss_pred chHHhhcCHHHHHHHHhhcCceeccCCCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCC
Q 001261 435 VKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTG 514 (1112)
Q Consensus 435 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TG 514 (1112)
...+..|++.+|.-|+..+.|.++|..+|.|+.+|.+.+||..+++.|...||..|||||.++||..++++|+|++++||
T Consensus 213 ~k~l~Em~~rdwri~redynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETg 292 (673)
T KOG0333|consen 213 EKVLAEMTERDWRIFREDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETG 292 (673)
T ss_pred hhhHHhcCCccceeeecceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEecc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCC----CCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcC
Q 001261 515 SGKTLAFVLPMLRHIKDQPPVAA----GDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRG 590 (1112)
Q Consensus 515 sGKT~~~llp~l~~l~~~~~~~~----~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~ 590 (1112)
||||++|++|++-.|...|+... ..||.++||+|||+||+||..+..+|++.+|++++.++||.+..+|--.+..|
T Consensus 293 sGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~g 372 (673)
T KOG0333|consen 293 SGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMG 372 (673)
T ss_pred CCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhcc
Confidence 99999999999999988876543 35899999999999999999999999999999999999999999998899999
Q ss_pred CeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCCC----------------------
Q 001261 591 TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD---------------------- 648 (1112)
Q Consensus 591 ~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~---------------------- 648 (1112)
|+|+|+|||+|++.|.+. .+-|++|.+||+||||+|+||||.+++..||.+++..
T Consensus 373 ceiviatPgrLid~Lenr---~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~ 449 (673)
T KOG0333|consen 373 CEIVIATPGRLIDSLENR---YLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSS 449 (673)
T ss_pred ceeeecCchHHHHHHHHH---HHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccc
Confidence 999999999999999874 3678999999999999999999999999999988531
Q ss_pred ---CcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHH
Q 001261 649 ---RQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQE 725 (1112)
Q Consensus 649 ---~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~ 725 (1112)
+|+++||||||+.++.+++.+|.+|+.++++..+.+...+.|.+.....+.++..|+++|... ...++|||+|+++
T Consensus 450 k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~-~~ppiIIFvN~kk 528 (673)
T KOG0333|consen 450 KKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESN-FDPPIIIFVNTKK 528 (673)
T ss_pred cceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHhC-CCCCEEEEEechh
Confidence 799999999999999999999999999999999999999999999999999999999999886 3569999999999
Q ss_pred HHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhccc
Q 001261 726 KCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRT 805 (1112)
Q Consensus 726 ~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~ 805 (1112)
.|+.|++.|.+.||.|+.|||+.+|++|+.++..|++|..+|||||++++||||||+|++|||||++.++++|+||||||
T Consensus 529 ~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRT 608 (673)
T KOG0333|consen 529 GADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRT 608 (673)
T ss_pred hHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEEecCCccCchHHHHHHHh-hccCCCChhHH
Q 001261 806 GRAGRKGCAITFISEEDAKYSPDLVKALE-LSEQVVPDDLK 845 (1112)
Q Consensus 806 gR~G~~g~~i~~~~~~d~~~~~~i~~~l~-~~~~~vp~~l~ 845 (1112)
||+|+.|+|++|+++.|...+.+|+.+|. ......|++|.
T Consensus 609 gRAGk~GtaiSflt~~dt~v~ydLkq~l~es~~s~~P~Ela 649 (673)
T KOG0333|consen 609 GRAGKSGTAISFLTPADTAVFYDLKQALRESVKSHCPPELA 649 (673)
T ss_pred cccccCceeEEEeccchhHHHHHHHHHHHHhhhccCChhhc
Confidence 99999999999999999999999998886 33445676654
|
|
| >KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-74 Score=605.88 Aligned_cols=451 Identities=39% Similarity=0.662 Sum_probs=410.2
Q ss_pred cccccccccccccchHHhhcCHHHHHHHHhhcCceeccCCCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHH
Q 001261 422 IDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVI 501 (1112)
Q Consensus 422 ~~~~~~~k~f~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~i 501 (1112)
+.|+.--+.-|.++-.+..|+.++....|+.+.|.+.|..+|+||.+|.++.+|..+++.|++.|+..|||||.|.||.+
T Consensus 125 i~Y~ePi~T~WkPP~hir~mS~e~~e~vRk~~~I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvv 204 (610)
T KOG0341|consen 125 ITYEEPIKTAWKPPRHIRKMSEEQRELVRKQLHILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVV 204 (610)
T ss_pred CcccCcchhccCCcHHHHHhhHHHHHHHHHhheEEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceE
Confidence 45665566778888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCEEEEcCCCChHHHHHHHHHHHHHhcC---CCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhc------CceEE
Q 001261 502 MSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQ---PPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM------GVRCV 572 (1112)
Q Consensus 502 l~g~dvii~a~TGsGKT~~~llp~l~~l~~~---~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~------~i~~~ 572 (1112)
++|+|+|++|-||||||++|.||++...+.+ .++..+.||.+|||||+|+||.|++..+..|+..+ .+++.
T Consensus 205 LsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~ 284 (610)
T KOG0341|consen 205 LSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSL 284 (610)
T ss_pred eecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhh
Confidence 9999999999999999999999999877654 45678899999999999999999999999988765 36788
Q ss_pred EEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEE
Q 001261 573 PVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTV 652 (1112)
Q Consensus 573 ~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~i 652 (1112)
+|.||.+..+|+..++.|.+|+|+|||+|.++|.. +..+|+-+.|+++||||+|+||||...+..|+.++...+|++
T Consensus 285 LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~K---K~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTL 361 (610)
T KOG0341|consen 285 LCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAK---KIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTL 361 (610)
T ss_pred hhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHH---hhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhhee
Confidence 99999999999999999999999999999999976 457899999999999999999999999999999999999999
Q ss_pred EEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHH
Q 001261 653 LFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFR 732 (1112)
Q Consensus 653 l~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~ 732 (1112)
|||||||..++.|++..+-.|+.++++..+..+-++.|.+.+.....|+.+|++.|.+. ..++||||..+.+++.+..
T Consensus 362 LFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkqEaKiVylLeCLQKT--~PpVLIFaEkK~DVD~IhE 439 (610)
T KOG0341|consen 362 LFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLECLQKT--SPPVLIFAEKKADVDDIHE 439 (610)
T ss_pred eeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHhhhhhhhHHHHhccC--CCceEEEeccccChHHHHH
Confidence 99999999999999999999999999999999999999988889999999999999874 4589999999999999999
Q ss_pred HHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCcc
Q 001261 733 DLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKG 812 (1112)
Q Consensus 733 ~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g 812 (1112)
+|.-.|+.++.|||+.+|++|...++.|+.|+.+|||||++++.|||+|++.+|||||+|..+++|+||||||||.|++|
T Consensus 440 YLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~G 519 (610)
T KOG0341|consen 440 YLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTG 519 (610)
T ss_pred HHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCC-ccCchHHHHHHHhhccCCCChhHHHHHHHHHHHHhhhhhcccCCCCC-CCCcCCChh
Q 001261 813 CAITFISEE-DAKYSPDLVKALELSEQVVPDDLKALADSFMAKVNQGLEQAHGTGYG-GSGFKFNEE 877 (1112)
Q Consensus 813 ~~i~~~~~~-d~~~~~~i~~~l~~~~~~vp~~l~~~~~~~~~~~~~~~~~~~~~~~~-g~g~~~~~~ 877 (1112)
.+.+|+.+. +...+.+|...|....|.||+.|..++......--.+.....|..|+ |-|..+.+-
T Consensus 520 iATTfINK~~~esvLlDLK~LL~EakQ~vP~~L~~L~~~~E~~~~a~~~~~kGCayCgGLGHRItdC 586 (610)
T KOG0341|consen 520 IATTFINKNQEESVLLDLKHLLQEAKQEVPPVLAELAGPMEEETIADAGGEKGCAYCGGLGHRITDC 586 (610)
T ss_pred eeeeeecccchHHHHHHHHHHHHHhhccCCHHHHHhCCCccccccccCCCccccccccCCCcccccC
Confidence 999999875 55677788888999999999998887755443222222233455554 447776543
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-71 Score=664.00 Aligned_cols=456 Identities=45% Similarity=0.766 Sum_probs=413.2
Q ss_pred ccCCcCCCcccccccccccccccchHHhhcCHHHHHHHHhhcCcee-ccCCCCCcccccccCCCCHHHHHHHHHCCCCCC
Q 001261 412 EKLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKI-HGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKP 490 (1112)
Q Consensus 412 ~~~~~~~~~~~~~~~~~k~f~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~p~pi~~~~~~~L~~~l~~~l~~~~~~~p 490 (1112)
..+..++|....+.||.|+||.+++.+..++.+++..++....+.+ +|..+|.|+.+|.+++|++.|++.|..+||..|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p 153 (545)
T PTZ00110 74 KRLQPIDWKSINLVPFEKNFYKEHPEVSALSSKEVDEIRKEKEITIIAGENVPKPVVSFEYTSFPDYILKSLKNAGFTEP 153 (545)
T ss_pred cccCCCCCccccccchhhhcccCChhhhcCCHHHHHHHHHhcCcEEecCCCCCcccCCHhhcCCCHHHHHHHHHCCCCCC
Confidence 3566788888889999999999999999999999999999998875 799999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCce
Q 001261 491 MPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVR 570 (1112)
Q Consensus 491 t~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~ 570 (1112)
||+|.++||.+++|+|+|++++||||||++|++|++.++..++....+.+|.+|||+||++||.|++..+..|+...+++
T Consensus 154 t~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~ 233 (545)
T PTZ00110 154 TPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIR 233 (545)
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCcc
Confidence 99999999999999999999999999999999999999988766666678999999999999999999999999989999
Q ss_pred EEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCCCCc
Q 001261 571 CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQ 650 (1112)
Q Consensus 571 ~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q 650 (1112)
+.+++||.....+...+..+++|||+||++|++++... ..+|.++.+|||||||+|++++|..++..|+..+++++|
T Consensus 234 ~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~---~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q 310 (545)
T PTZ00110 234 NTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESN---VTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 310 (545)
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcC---CCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCe
Confidence 99999999999999999999999999999999999764 367899999999999999999999999999999999999
Q ss_pred EEEEeccccHHHHHHHHHhcC-CCeEEEEcCcc-cccCCccEEEEecccchhHHHHHHHHHhhh-cCCeEEEEeCCHHHH
Q 001261 651 TVLFSATFPRQVEILARKVLN-KPVEIQVGGRS-VVNKDITQLVEVRPESDRFLRLLELLGEWY-EKGKILIFVHSQEKC 727 (1112)
Q Consensus 651 ~il~SAT~~~~~~~l~~~~~~-~p~~i~i~~~~-~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~ 727 (1112)
+|+||||||..+..++..++. .|+.+.++... .....+.+.+.+.....|...|..+|.... ...++||||+++..|
T Consensus 311 ~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a 390 (545)
T PTZ00110 311 TLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGA 390 (545)
T ss_pred EEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHH
Confidence 999999999999999999886 68888776544 344567888877777888888888887765 567999999999999
Q ss_pred HHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCC
Q 001261 728 DALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGR 807 (1112)
Q Consensus 728 ~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR 807 (1112)
+.|+..|...++.+..+||++++.+|..+++.|++|.+.|||||+++++|||||+|++|||||+|.++.+|+||+||+||
T Consensus 391 ~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR 470 (545)
T PTZ00110 391 DFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGR 470 (545)
T ss_pred HHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEEecCCccCchHHHHHHHhhccCCCChhHHHHHHHHHHHHhhhhhcccCCCCCCCCcCC
Q 001261 808 AGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAKVNQGLEQAHGTGYGGSGFKF 874 (1112)
Q Consensus 808 ~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~ 874 (1112)
+|..|.||+|+++.+...+..|++.|....+.||++|..|+.... .+.......+|++.+..+
T Consensus 471 ~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~ 533 (545)
T PTZ00110 471 AGAKGASYTFLTPDKYRLARDLVKVLREAKQPVPPELEKLSNERS----NGTERRRWGGYGRFSNNV 533 (545)
T ss_pred CCCCceEEEEECcchHHHHHHHHHHHHHccCCCCHHHHHHHHHhc----CCcccccccCCCCCCCCC
Confidence 999999999999999999999999999999999999998865431 122222334555555544
|
|
| >KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-70 Score=577.65 Aligned_cols=364 Identities=36% Similarity=0.616 Sum_probs=346.7
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEE
Q 001261 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545 (1112)
Q Consensus 466 i~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LI 545 (1112)
..+|.++++.+.+++++..+||..||+||.++||.++.|+|||+.|+||||||.+|+||++++++.++. .+.+||
T Consensus 60 ~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~-----~~~~lV 134 (476)
T KOG0330|consen 60 FKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPK-----LFFALV 134 (476)
T ss_pred hcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCC-----CceEEE
Confidence 468999999999999999999999999999999999999999999999999999999999999998653 489999
Q ss_pred EccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEecc
Q 001261 546 MAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDE 625 (1112)
Q Consensus 546 l~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDE 625 (1112)
|+||||||.||...+..+...+|+++++++||.....|...+.+.++|||||||+|.+++.+. +.++|..+.|+||||
T Consensus 135 LtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~T--kgf~le~lk~LVlDE 212 (476)
T KOG0330|consen 135 LTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENT--KGFSLEQLKFLVLDE 212 (476)
T ss_pred ecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhc--cCccHHHhHHHhhch
Confidence 999999999999999999999999999999999999999999999999999999999999854 347899999999999
Q ss_pred chhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHH
Q 001261 626 ADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLL 705 (1112)
Q Consensus 626 ah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll 705 (1112)
||+++|+.|.+.+..|+..++..+|++|||||||..+..+....+.+|+.+.+...-.....+.|.+.+.+...|..+|+
T Consensus 213 ADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV 292 (476)
T KOG0330|consen 213 ADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLV 292 (476)
T ss_pred HHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhHH
Confidence 99999999999999999999999999999999999999999999999999999888888888999999999999999999
Q ss_pred HHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccE
Q 001261 706 ELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELEL 785 (1112)
Q Consensus 706 ~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~ 785 (1112)
.+|.... ++.+||||++...+..++-.|...|+.+..+||+|++..|.-.++.|++|.+.||||||+++||||||.|++
T Consensus 293 ~ll~e~~-g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~ 371 (476)
T KOG0330|consen 293 YLLNELA-GNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDV 371 (476)
T ss_pred HHHHhhc-CCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceE
Confidence 9998754 589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhcc
Q 001261 786 VINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSE 837 (1112)
Q Consensus 786 VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~ 837 (1112)
|||||+|.+..+|+||+||+||+|..|.+|+|++..|...+..|...+....
T Consensus 372 VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl 423 (476)
T KOG0330|consen 372 VVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKL 423 (476)
T ss_pred EEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999988888888886644
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-66 Score=620.51 Aligned_cols=432 Identities=31% Similarity=0.539 Sum_probs=393.3
Q ss_pred cCCcCCCccccc-ccccccccccchHHhh-cCHHHHHHHHhhcCceeccCCCCCcccccccCCCCHHHHHHHHHCCCCCC
Q 001261 413 KLSIVDHSKIDY-QPFRKNFYIEVKEIAR-MTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKP 490 (1112)
Q Consensus 413 ~~~~~~~~~~~~-~~~~k~f~~~~~~~~~-~~~~~~~~~r~~~~~~~~~~~~p~pi~~~~~~~L~~~l~~~l~~~~~~~p 490 (1112)
....++|+...+ .+|.++||........ ++..++..+++.++|.+.|..+|.|+.+|.+++|++.+++.|...||..|
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~p 144 (518)
T PLN00206 65 SRVAVGAPKPKRLPATDECFYVRDPGSTSGLSSSQAELLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFP 144 (518)
T ss_pred ccCCcCCCchhhcCCcCCcCCccCcchhccCCHHHHHHHHHHCCCEecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCC
Confidence 345677776655 7789999998777654 99999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCC--CCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcC
Q 001261 491 MPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPP--VAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMG 568 (1112)
Q Consensus 491 t~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~--~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~ 568 (1112)
||+|.++||.++.|+|+|++++||||||++|++|++.++..... .....++++|||+||++||.|++..+..+...++
T Consensus 145 tpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~ 224 (518)
T PLN00206 145 TPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLP 224 (518)
T ss_pred CHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999998875321 1223689999999999999999999999999889
Q ss_pred ceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCCC
Q 001261 569 VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD 648 (1112)
Q Consensus 569 i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~ 648 (1112)
+.+++++||.....++..+..+++|||+||++|++++... ...+.++.+|||||||+|+++||..++..|+..+ +.
T Consensus 225 ~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~---~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l-~~ 300 (518)
T PLN00206 225 FKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKH---DIELDNVSVLVLDEVDCMLERGFRDQVMQIFQAL-SQ 300 (518)
T ss_pred ceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcC---CccchheeEEEeecHHHHhhcchHHHHHHHHHhC-CC
Confidence 9999999999999999899999999999999999999765 3678999999999999999999999999999888 46
Q ss_pred CcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhc-CCeEEEEeCCHHHH
Q 001261 649 RQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE-KGKILIFVHSQEKC 727 (1112)
Q Consensus 649 ~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~ 727 (1112)
.|+|+||||+|+.+..++..++.+++.+.++........+.+.+.+.....+...|+.+|..... .+++||||+++..+
T Consensus 301 ~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a 380 (518)
T PLN00206 301 PQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGA 380 (518)
T ss_pred CcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhH
Confidence 89999999999999999999999999998887777777788888888777788888888865432 35899999999999
Q ss_pred HHHHHHHHh-cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccC
Q 001261 728 DALFRDLLK-HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTG 806 (1112)
Q Consensus 728 ~~l~~~L~~-~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~g 806 (1112)
+.|+..|.. .++.+..+||+|++.+|..+++.|++|.++|||||+++++|||||+|++|||||+|.++.+|+||+||||
T Consensus 381 ~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaG 460 (518)
T PLN00206 381 DLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRAS 460 (518)
T ss_pred HHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccc
Confidence 999999975 6899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhHHHHH
Q 001261 807 RAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALA 848 (1112)
Q Consensus 807 R~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~~~ 848 (1112)
|.|..|.|++|+++.+...+..|++.|..+++.+|++|..+.
T Consensus 461 R~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~~ 502 (518)
T PLN00206 461 RMGEKGTAIVFVNEEDRNLFPELVALLKSSGAAIPRELANSR 502 (518)
T ss_pred cCCCCeEEEEEEchhHHHHHHHHHHHHHHcCCCCCHHHHhCh
Confidence 999999999999999999999999999999999999887644
|
|
| >KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-66 Score=567.30 Aligned_cols=374 Identities=36% Similarity=0.571 Sum_probs=340.9
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEE
Q 001261 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545 (1112)
Q Consensus 466 i~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LI 545 (1112)
..+|.+++|+..|+++|..+||..|||||..+||..+-|+|++.||.||||||.+|++|+|..|+..|... ...+|||
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~--~~TRVLV 257 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKV--AATRVLV 257 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccC--cceeEEE
Confidence 36899999999999999999999999999999999999999999999999999999999999999876432 3568999
Q ss_pred EccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEecc
Q 001261 546 MAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDE 625 (1112)
Q Consensus 546 l~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDE 625 (1112)
|||||+||.|+++++++++.+..|.+++++||.+...|-..|...++|||+|||+|+++|.+.. .++|++|.++||||
T Consensus 258 L~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~--sf~ldsiEVLvlDE 335 (691)
T KOG0338|consen 258 LVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSP--SFNLDSIEVLVLDE 335 (691)
T ss_pred EeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCC--CccccceeEEEech
Confidence 9999999999999999999999999999999999999999999999999999999999997654 37899999999999
Q ss_pred chhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEE-ecc--cchhHH
Q 001261 626 ADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVE-VRP--ESDRFL 702 (1112)
Q Consensus 626 ah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~-~~~--~~~k~~ 702 (1112)
||||++.||..++..|+..++.++|++||||||+..+..|+...|+.|+.|.+.........+.|-|+ +.+ +..+-.
T Consensus 336 ADRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea 415 (691)
T KOG0338|consen 336 ADRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREA 415 (691)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHH
Confidence 99999999999999999999999999999999999999999999999999999988877777877654 332 234545
Q ss_pred HHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCC
Q 001261 703 RLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKE 782 (1112)
Q Consensus 703 ~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~ 782 (1112)
.|..++...+ ...+|||+.++..|..+.-.|.-.|+.+.-+||.++|.+|...+..|+++.++|||||++++|||||++
T Consensus 416 ~l~~l~~rtf-~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~g 494 (691)
T KOG0338|consen 416 MLASLITRTF-QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEG 494 (691)
T ss_pred HHHHHHHHhc-ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccc
Confidence 5555555544 578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhh-----ccCCCChhH
Q 001261 783 LELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALEL-----SEQVVPDDL 844 (1112)
Q Consensus 783 v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~-----~~~~vp~~l 844 (1112)
|.+||||++|.+...|+||+|||+|+|+.|.+++|+.+.+..++..|++.... .+-.||+..
T Consensus 495 V~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~~~a~~klk~R~i~~~~ 561 (691)
T KOG0338|consen 495 VQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSSTKAGSKLKNRNIPPEV 561 (691)
T ss_pred eeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhhhhcccchhhcCCCHHH
Confidence 99999999999999999999999999999999999999999999999987432 234566543
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-64 Score=604.44 Aligned_cols=363 Identities=44% Similarity=0.741 Sum_probs=336.2
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEE
Q 001261 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (1112)
Q Consensus 467 ~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl 546 (1112)
..|.+++|++.+++.|...||..|||||.++||.++.|+|+|++|+||||||++|++|+++++.... ....+.+|||
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~---~~~~~~aLil 105 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSV---ERKYVSALIL 105 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhccc---ccCCCceEEE
Confidence 7899999999999999999999999999999999999999999999999999999999999977431 1111129999
Q ss_pred ccchhHHHHHHHHHHHHhhhc-CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEecc
Q 001261 547 APTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDE 625 (1112)
Q Consensus 547 ~PtreLa~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDE 625 (1112)
+|||+||.|+++++..++... ++.+++++||.+...|...|..+++|||+|||+|++++... .+++.++.+|||||
T Consensus 106 ~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~---~l~l~~v~~lVlDE 182 (513)
T COG0513 106 APTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRG---KLDLSGVETLVLDE 182 (513)
T ss_pred CCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcC---CcchhhcCEEEecc
Confidence 999999999999999999998 79999999999999999999999999999999999999875 47899999999999
Q ss_pred chhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCccc--ccCCccEEEEecccch-hHH
Q 001261 626 ADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSV--VNKDITQLVEVRPESD-RFL 702 (1112)
Q Consensus 626 ah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~--~~~~i~q~~~~~~~~~-k~~ 702 (1112)
||+|++|||...+..|+..++.++|+++||||||..+..++..++.+|+.+.+..... ....|.|.+..+.... |+.
T Consensus 183 ADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~ 262 (513)
T COG0513 183 ADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLE 262 (513)
T ss_pred HhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888875544 7788999998888765 888
Q ss_pred HHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCC
Q 001261 703 RLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKE 782 (1112)
Q Consensus 703 ~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~ 782 (1112)
.|..+|... ...++||||+++..|+.|+..|...|+.+..|||+|+|..|..++..|++|..+||||||+++|||||++
T Consensus 263 ~L~~ll~~~-~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~ 341 (513)
T COG0513 263 LLLKLLKDE-DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPD 341 (513)
T ss_pred HHHHHHhcC-CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccc
Confidence 888888754 3458999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCC-ccCchHHHHHHHhhc
Q 001261 783 LELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEE-DAKYSPDLVKALELS 836 (1112)
Q Consensus 783 v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~-d~~~~~~i~~~l~~~ 836 (1112)
|++|||||+|.+++.|+||+|||||+|..|.+++|+++. +...+..|.+.+...
T Consensus 342 v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~ 396 (513)
T COG0513 342 VSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERK 396 (513)
T ss_pred cceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999986 888888888887654
|
|
| >KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-65 Score=569.84 Aligned_cols=391 Identities=42% Similarity=0.711 Sum_probs=366.7
Q ss_pred ceeccCCCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCC
Q 001261 455 LKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPP 534 (1112)
Q Consensus 455 ~~~~~~~~p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~ 534 (1112)
+++.|.++|.++.+|..-.|...++..++..+|..|||+|+.+||.|..|+|+++||+||||||.+||+|++.+++...+
T Consensus 62 v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~ 141 (482)
T KOG0335|consen 62 VKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGP 141 (482)
T ss_pred eeccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999987643
Q ss_pred CCC----C-CCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcC
Q 001261 535 VAA----G-DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSG 609 (1112)
Q Consensus 535 ~~~----~-~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~ 609 (1112)
... + ..|.+|||+|||+||.|+|+++.+|.-..++.++.+|||.+...+...+..+|+|+|||||+|.+++...
T Consensus 142 ~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g- 220 (482)
T KOG0335|consen 142 EDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERG- 220 (482)
T ss_pred ccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcc-
Confidence 221 1 3599999999999999999999999998999999999999999999999999999999999999999764
Q ss_pred CcccccCCceEEEeccchhhhc-cCChhHHHHHHHhcCC----CCcEEEEeccccHHHHHHHHHhcCC-CeEEEEcCccc
Q 001261 610 GKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQNIRP----DRQTVLFSATFPRQVEILARKVLNK-PVEIQVGGRSV 683 (1112)
Q Consensus 610 ~~~~~l~~i~~vViDEah~~~~-~gf~~~i~~il~~~~~----~~q~il~SAT~~~~~~~l~~~~~~~-p~~i~i~~~~~ 683 (1112)
.+.|..+.||||||||+|+| |+|.++|..|+..... .+|++|||||+|..+..++..|+.+ .+.+.++..+.
T Consensus 221 --~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~ 298 (482)
T KOG0335|consen 221 --KISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGS 298 (482)
T ss_pred --eeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeecc
Confidence 36889999999999999999 9999999999988754 6899999999999999999999886 88889999999
Q ss_pred ccCCccEEEEecccchhHHHHHHHHHhhh---cCC-----eEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHH
Q 001261 684 VNKDITQLVEVRPESDRFLRLLELLGEWY---EKG-----KILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRES 755 (1112)
Q Consensus 684 ~~~~i~q~~~~~~~~~k~~~ll~~l~~~~---~~~-----~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~ 755 (1112)
...++.|.+.++....|...|+++|.... ..+ .++|||.++..|+.|+..|...++++..|||...+.+|..
T Consensus 299 ~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~ 378 (482)
T KOG0335|consen 299 TSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQ 378 (482)
T ss_pred ccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHH
Confidence 99999999999999999999999998655 344 8999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhh
Q 001261 756 TISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALEL 835 (1112)
Q Consensus 756 ~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~ 835 (1112)
++..|++|.+.|||||+|++||||||+|.+|||||+|.+..+|+||||||||.|+.|.++.|+...+...+..|++.|..
T Consensus 379 al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~e 458 (482)
T KOG0335|consen 379 ALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTE 458 (482)
T ss_pred HHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCChhHHHHH
Q 001261 836 SEQVVPDDLKALA 848 (1112)
Q Consensus 836 ~~~~vp~~l~~~~ 848 (1112)
+++.||.||.+++
T Consensus 459 a~q~vP~wl~~~~ 471 (482)
T KOG0335|consen 459 ANQEVPQWLSELS 471 (482)
T ss_pred hcccCcHHHHhhh
Confidence 9999999998743
|
|
| >KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-63 Score=507.03 Aligned_cols=373 Identities=34% Similarity=0.581 Sum_probs=347.2
Q ss_pred CCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCc
Q 001261 463 PKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPV 542 (1112)
Q Consensus 463 p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~ 542 (1112)
-.++.+|+++||...+++.+...||.+|+.||+.|||.|+.|+|||+++..|+|||.+|.+.+|+.+.-. ....+
T Consensus 23 ~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~-----~r~tQ 97 (400)
T KOG0328|consen 23 VKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS-----VRETQ 97 (400)
T ss_pred cccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccc-----cceee
Confidence 4678899999999999999999999999999999999999999999999999999999999888765432 23468
Q ss_pred EEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEE
Q 001261 543 GLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLV 622 (1112)
Q Consensus 543 ~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vV 622 (1112)
+|||.|||+||.|+.+.+..++.++++.+..+.||.+..+++..+.-|+++|.+|||++++++.... ...+.+.+||
T Consensus 98 ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~---L~tr~vkmlV 174 (400)
T KOG0328|consen 98 ALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRS---LRTRAVKMLV 174 (400)
T ss_pred EEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhcc---ccccceeEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999998754 5667899999
Q ss_pred eccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccc-hhH
Q 001261 623 MDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPES-DRF 701 (1112)
Q Consensus 623 iDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~-~k~ 701 (1112)
|||||.|++.||..++..|+..++|+.|++++|||+|..+.....+|+.+|+.+.+.........|.|++.-...+ -|+
T Consensus 175 LDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKf 254 (400)
T KOG0328|consen 175 LDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKF 254 (400)
T ss_pred eccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhH
Confidence 9999999999999999999999999999999999999999999999999999999998888888899988766555 488
Q ss_pred HHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCC
Q 001261 702 LRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVK 781 (1112)
Q Consensus 702 ~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~ 781 (1112)
..|..+... +.-.+++|||||+..++.|.+.+...++.+.++||+|++.+|+.++..|++|..+|||+|++.+||||+|
T Consensus 255 dtLcdLYd~-LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~ 333 (400)
T KOG0328|consen 255 DTLCDLYDT-LTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQ 333 (400)
T ss_pred hHHHHHhhh-hehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcc
Confidence 888777654 3457899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhH
Q 001261 782 ELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDL 844 (1112)
Q Consensus 782 ~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp~~l 844 (1112)
.|++|||||+|.+.+.|+|||||.||.|++|.++-|+..+|...+.+|.+.+.......|-.+
T Consensus 334 qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~nv 396 (400)
T KOG0328|consen 334 QVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMNV 396 (400)
T ss_pred eeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccchh
Confidence 999999999999999999999999999999999999999999999999999988877777654
|
|
| >KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-62 Score=535.46 Aligned_cols=372 Identities=33% Similarity=0.565 Sum_probs=340.6
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEE
Q 001261 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545 (1112)
Q Consensus 466 i~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LI 545 (1112)
...|..+.|++.++++|..+||..+|++|..+||.++.|+|+|+.|.||||||++|++|+++++...+... .++..+||
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~-r~~~~vlI 159 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKP-RNGTGVLI 159 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCC-CCCeeEEE
Confidence 45688899999999999999999999999999999999999999999999999999999999998875443 36888999
Q ss_pred EccchhHHHHHHHHHHHHhhhc-CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEec
Q 001261 546 MAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (1112)
Q Consensus 546 l~PtreLa~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViD 624 (1112)
|||||+||+|++.+++.+.++. ++.+..+.||+........+.++++|+|+|||+|+++|.+..+ +.+..+.++|||
T Consensus 160 i~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~--f~~r~~k~lvlD 237 (543)
T KOG0342|consen 160 ICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSG--FLFRNLKCLVLD 237 (543)
T ss_pred ecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCc--chhhccceeEee
Confidence 9999999999999999999988 9999999999999988889999999999999999999988765 345667899999
Q ss_pred cchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCC-CeEEEEcC--cccccCCccEEEEecccchhH
Q 001261 625 EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNK-PVEIQVGG--RSVVNKDITQLVEVRPESDRF 701 (1112)
Q Consensus 625 Eah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~-p~~i~i~~--~~~~~~~i~q~~~~~~~~~k~ 701 (1112)
|||+++++||...+..|+..++..+|+++||||.|+.+..+++-.+.. |+++.+.. .......+.|-+++.+...++
T Consensus 238 EADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f 317 (543)
T KOG0342|consen 238 EADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRF 317 (543)
T ss_pred cchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchH
Confidence 999999999999999999999999999999999999999999988865 87777654 445667789989999999999
Q ss_pred HHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCC
Q 001261 702 LRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVK 781 (1112)
Q Consensus 702 ~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~ 781 (1112)
..|+.+|.+.....++||||+|...+..++..|....++|..|||+++|..|..++..|++.+..|||||||++||+|+|
T Consensus 318 ~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P 397 (543)
T KOG0342|consen 318 SLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIP 397 (543)
T ss_pred HHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCC
Confidence 99999999887778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhccCCCC
Q 001261 782 ELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVP 841 (1112)
Q Consensus 782 ~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp 841 (1112)
+|++||.||+|.++.+|+||+|||||.|..|.+++|+.+++..++..|. .+.......|
T Consensus 398 ~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK-~lpl~~~e~~ 456 (543)
T KOG0342|consen 398 DVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK-KLPLEEFEFP 456 (543)
T ss_pred CceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh-hCCCcccCCC
Confidence 9999999999999999999999999999999999999999998887776 3333333333
|
|
| >KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-61 Score=509.86 Aligned_cols=366 Identities=36% Similarity=0.575 Sum_probs=334.8
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEE
Q 001261 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545 (1112)
Q Consensus 466 i~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LI 545 (1112)
...|..|||++++.+.|+.+|+.+|||+|..|||.|+.|+|+|++|.||||||++|.+|+|+.+...| +|-.+||
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP-----~giFalv 80 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDP-----YGIFALV 80 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCC-----CcceEEE
Confidence 46799999999999999999999999999999999999999999999999999999999999988754 6889999
Q ss_pred EccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCc-ccccCCceEEEec
Q 001261 546 MAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGK-ITNLRRVTYLVMD 624 (1112)
Q Consensus 546 l~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~-~~~l~~i~~vViD 624 (1112)
++|||+||.|+.+.|..+.+.+++++..++||...-.|...|...++|||+|||+|.+++..+.+. ...++++.|+|||
T Consensus 81 lTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlD 160 (442)
T KOG0340|consen 81 LTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLD 160 (442)
T ss_pred ecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEec
Confidence 999999999999999999999999999999999999999999999999999999999999876332 2347899999999
Q ss_pred cchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCC--eEEEEcCcccccCCccEEEEecccchhHH
Q 001261 625 EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKP--VEIQVGGRSVVNKDITQLVEVRPESDRFL 702 (1112)
Q Consensus 625 Eah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p--~~i~i~~~~~~~~~i~q~~~~~~~~~k~~ 702 (1112)
|||+|++.+|...+.-++..++..+|+++||||++..+..+.......+ ..+.......+...+.|.+.+++...+-.
T Consensus 161 EADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkda 240 (442)
T KOG0340|consen 161 EADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDA 240 (442)
T ss_pred chhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHH
Confidence 9999999999999999999999999999999999998877766655553 33333334445567788889999999999
Q ss_pred HHHHHHHhhhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCC
Q 001261 703 RLLELLGEWYE--KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDV 780 (1112)
Q Consensus 703 ~ll~~l~~~~~--~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi 780 (1112)
+|+.+|..+.. .+.++||+++...|+.|+..|...++.+..+||.|+|.+|...+..|+++..+|||||+|++|||||
T Consensus 241 YLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDI 320 (442)
T KOG0340|consen 241 YLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDI 320 (442)
T ss_pred HHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCC
Confidence 99999988766 6799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhc
Q 001261 781 KELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELS 836 (1112)
Q Consensus 781 ~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~ 836 (1112)
|.|.+|||||+|.+|.+|+||+||++|+|+.|.+++|+++.|..++..|...++..
T Consensus 321 P~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkK 376 (442)
T KOG0340|consen 321 PTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKK 376 (442)
T ss_pred CceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999998888887776543
|
|
| >KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-60 Score=519.12 Aligned_cols=359 Identities=34% Similarity=0.563 Sum_probs=323.3
Q ss_pred cccccCC--CCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEE
Q 001261 467 KTWHQTG--LTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGL 544 (1112)
Q Consensus 467 ~~~~~~~--L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~L 544 (1112)
.+|..++ |+++|+.+|..+||...||+|..+||.++.++||++.++||||||++|++|++..|..+.....+...-+|
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgal 83 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGAL 83 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEE
Confidence 4677665 55999999999999999999999999999999999999999999999999999998554322222124589
Q ss_pred EEccchhHHHHHHHHHHHHhhh-cCceEEEEeCCCChHHHHHHHhc-CCeEEEeCchHHHHHHHhcCCcccccCCceEEE
Q 001261 545 IMAPTRELVQQIHSDIRKFAKV-MGVRCVPVYGGSGVAQQISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLV 622 (1112)
Q Consensus 545 Il~PtreLa~Q~~~~~~~~~~~-~~i~~~~~~gg~~~~~~~~~l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vV 622 (1112)
||+||||||.||++++..|... .++.+.+++||.+..+++..++. ++.|+|||||+|.+++..... .+++.++.+||
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~-~l~~rsLe~LV 162 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAE-KLSFRSLEILV 162 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhh-hccccccceEE
Confidence 9999999999999999999888 68999999999999999887764 789999999999999976442 34577999999
Q ss_pred eccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCccc--ccCCccEEEEecccchh
Q 001261 623 MDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSV--VNKDITQLVEVRPESDR 700 (1112)
Q Consensus 623 iDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~--~~~~i~q~~~~~~~~~k 700 (1112)
|||||++++|||..+++.|+..+|.++.+=|||||....+..+++..+.||+.+.+...+. .+..+...+.++....|
T Consensus 163 LDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK 242 (567)
T KOG0345|consen 163 LDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEK 242 (567)
T ss_pred ecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHH
Confidence 9999999999999999999999999999999999999999999999999999999987765 56667778888999999
Q ss_pred HHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhc--CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccC
Q 001261 701 FLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH--GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGL 778 (1112)
Q Consensus 701 ~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~--g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~Gl 778 (1112)
+..|+.+|.. ....++|||++|...++.....|... .+.++.+||.|.+..|..++..|.+....||+||||++|||
T Consensus 243 ~~~lv~~L~~-~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGl 321 (567)
T KOG0345|consen 243 LSQLVHLLNN-NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGL 321 (567)
T ss_pred HHHHHHHHhc-cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccC
Confidence 9999999987 45679999999999999999888765 67899999999999999999999998899999999999999
Q ss_pred CCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchH
Q 001261 779 DVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSP 827 (1112)
Q Consensus 779 Di~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~ 827 (1112)
|||+|++||+||+|.++..|+||+|||||+|+.|.|++|+.+.+..+.+
T Consensus 322 Dip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYve 370 (567)
T KOG0345|consen 322 DIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVE 370 (567)
T ss_pred CCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHH
Confidence 9999999999999999999999999999999999999999997665544
|
|
| >KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-62 Score=503.56 Aligned_cols=368 Identities=31% Similarity=0.576 Sum_probs=345.2
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEE
Q 001261 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (1112)
Q Consensus 467 ~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl 546 (1112)
..|++++|...++..+...||..|+|+|.++||.++.|+|+|+-|..|+|||.+|++|+|+.+... .+.-+++||
T Consensus 85 ~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~-----~~~IQ~~il 159 (459)
T KOG0326|consen 85 NEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPK-----KNVIQAIIL 159 (459)
T ss_pred ccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcc-----ccceeEEEE
Confidence 579999999999999999999999999999999999999999999999999999999999987642 346789999
Q ss_pred ccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccc
Q 001261 547 APTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEA 626 (1112)
Q Consensus 547 ~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEa 626 (1112)
||||+||.|+...++.+++.+++.+...+||++...++-.+..+.+++|+|||++++++.. .+..++++.++|+|||
T Consensus 160 VPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~K---gVa~ls~c~~lV~DEA 236 (459)
T KOG0326|consen 160 VPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKK---GVADLSDCVILVMDEA 236 (459)
T ss_pred eecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhc---ccccchhceEEEechh
Confidence 9999999999999999999999999999999999999999999999999999999999976 4578999999999999
Q ss_pred hhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHH
Q 001261 627 DRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLE 706 (1112)
Q Consensus 627 h~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~ 706 (1112)
|.|++..|.+.+..++..+++.+|+++||||||-.+..|...++.+|..|.+- .......++|++.++.+..|+..|-.
T Consensus 237 DKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM-~eLtl~GvtQyYafV~e~qKvhCLnt 315 (459)
T KOG0326|consen 237 DKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLM-EELTLKGVTQYYAFVEERQKVHCLNT 315 (459)
T ss_pred hhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehh-hhhhhcchhhheeeechhhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999988764 34455678999999999999888877
Q ss_pred HHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEE
Q 001261 707 LLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELV 786 (1112)
Q Consensus 707 ~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~V 786 (1112)
++... .-++.|||||+...++.|++.+.+.||+|+.+|+.|-|+.|..++..|++|.++.||||+.+.|||||+.+++|
T Consensus 316 LfskL-qINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvV 394 (459)
T KOG0326|consen 316 LFSKL-QINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVV 394 (459)
T ss_pred HHHHh-cccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEE
Confidence 77664 45789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhH
Q 001261 787 INFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDL 844 (1112)
Q Consensus 787 I~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp~~l 844 (1112)
||||+|.+.+.|+|||||.||.|+.|.||.|++-+|...+..|...|.....++|..+
T Consensus 395 INFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~~i 452 (459)
T KOG0326|consen 395 INFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSNI 452 (459)
T ss_pred EecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCCcC
Confidence 9999999999999999999999999999999999999999999999999888888643
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-59 Score=553.83 Aligned_cols=369 Identities=34% Similarity=0.560 Sum_probs=332.8
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCC--CCCCCc
Q 001261 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVA--AGDGPV 542 (1112)
Q Consensus 465 pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~--~~~~~~ 542 (1112)
+-.+|.+++|++.+++.|..+||..|||+|.++||.++.|+|+|++||||||||++|++|++..+...+... ...+++
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~ 85 (423)
T PRK04837 6 TEQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPR 85 (423)
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCce
Confidence 346899999999999999999999999999999999999999999999999999999999999987654321 124689
Q ss_pred EEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEE
Q 001261 543 GLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLV 622 (1112)
Q Consensus 543 ~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vV 622 (1112)
+|||+||++||.|++..+..++..+++.+.+++||.....+...+..+++||||||++|++++... ...+..+.+||
T Consensus 86 ~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~---~~~l~~v~~lV 162 (423)
T PRK04837 86 ALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN---HINLGAIQVVV 162 (423)
T ss_pred EEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcC---CcccccccEEE
Confidence 999999999999999999999999999999999999998888888889999999999999998653 35788999999
Q ss_pred eccchhhhccCChhHHHHHHHhcCC--CCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchh
Q 001261 623 MDEADRMFDMGFEPQITRIVQNIRP--DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDR 700 (1112)
Q Consensus 623 iDEah~~~~~gf~~~i~~il~~~~~--~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k 700 (1112)
|||||+|++++|...+..++..++. .+++++||||++..+..++..++.+|..+.+.........+.+.+.......+
T Consensus 163 iDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k 242 (423)
T PRK04837 163 LDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEK 242 (423)
T ss_pred EecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHH
Confidence 9999999999999999999999874 56789999999999999999999999888877665555667776666666677
Q ss_pred HHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCC
Q 001261 701 FLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDV 780 (1112)
Q Consensus 701 ~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi 780 (1112)
...|..++... ...++||||+++..|+.++..|...|+.+..+||+|++.+|..+++.|++|.++|||||+++++||||
T Consensus 243 ~~~l~~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDi 321 (423)
T PRK04837 243 MRLLQTLIEEE-WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHI 321 (423)
T ss_pred HHHHHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCc
Confidence 77777777553 35799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhcc
Q 001261 781 KELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSE 837 (1112)
Q Consensus 781 ~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~ 837 (1112)
|+|++|||||+|.++..|+||+||+||.|+.|.||+|+++.+...+..|.+.+....
T Consensus 322 p~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~ 378 (423)
T PRK04837 322 PAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSI 378 (423)
T ss_pred cccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999999998888888877776543
|
|
| >KOG0343 consensus RNA Helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-60 Score=522.31 Aligned_cols=363 Identities=33% Similarity=0.537 Sum_probs=333.4
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEE
Q 001261 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGL 544 (1112)
Q Consensus 465 pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~L 544 (1112)
.+..|.+|+|+..+++.|+..+|..||.||.++||..+.|+|||+.|.||||||++|++|+|++|... .+....|.-||
T Consensus 67 ~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~-kWs~~DGlGal 145 (758)
T KOG0343|consen 67 TIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRL-KWSPTDGLGAL 145 (758)
T ss_pred hhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHc-CCCCCCCceeE
Confidence 45789999999999999999999999999999999999999999999999999999999999998753 24456788899
Q ss_pred EEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEec
Q 001261 545 IMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (1112)
Q Consensus 545 Il~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViD 624 (1112)
||.|||+||.|++.++.++++..++.+.+++||.........+. .++|+|||||+|+.++..+.. ++..++.+||||
T Consensus 146 IISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~--f~t~~lQmLvLD 222 (758)
T KOG0343|consen 146 IISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPN--FSTSNLQMLVLD 222 (758)
T ss_pred EecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCC--CCCCcceEEEec
Confidence 99999999999999999999999999999999998777666655 489999999999999987642 466789999999
Q ss_pred cchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCc--ccccCCccEEEEecccchhHH
Q 001261 625 EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGR--SVVNKDITQLVEVRPESDRFL 702 (1112)
Q Consensus 625 Eah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~--~~~~~~i~q~~~~~~~~~k~~ 702 (1112)
|||+|++|||...+..|+.++++.+|++|||||.+..+..+++..+.+|.+|.+... ...+.++.|.+++++..+|+.
T Consensus 223 EADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~ 302 (758)
T KOG0343|consen 223 EADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKID 302 (758)
T ss_pred cHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHH
Confidence 999999999999999999999999999999999999999999999999998888743 456778999999999999999
Q ss_pred HHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhc--CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCC
Q 001261 703 RLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH--GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDV 780 (1112)
Q Consensus 703 ~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~--g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi 780 (1112)
.|..+|.... ..++|||+.|.+.+..++..+... |++++.+||.|+|..|..++..|......||+||++++||||+
T Consensus 303 ~L~sFI~shl-k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDF 381 (758)
T KOG0343|consen 303 MLWSFIKSHL-KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDF 381 (758)
T ss_pred HHHHHHHhcc-ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCC
Confidence 9999998754 568999999999999999999875 8999999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCc-cCchHHHHHH
Q 001261 781 KELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEED-AKYSPDLVKA 832 (1112)
Q Consensus 781 ~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d-~~~~~~i~~~ 832 (1112)
|.|++||.||||.++.+|+||+||++|.+..|.|++++++.+ ..++..|.+.
T Consensus 382 paVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k 434 (758)
T KOG0343|consen 382 PAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKK 434 (758)
T ss_pred cccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999987 5555555554
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-58 Score=560.27 Aligned_cols=369 Identities=36% Similarity=0.597 Sum_probs=333.0
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCC--CCCCCc
Q 001261 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVA--AGDGPV 542 (1112)
Q Consensus 465 pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~--~~~~~~ 542 (1112)
...+|.+++|++.|++.|..+||..|||||.++||.++.|+|+|++++||||||++|++|+++++...+... ...+++
T Consensus 7 ~~~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~r 86 (572)
T PRK04537 7 TDLTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPR 86 (572)
T ss_pred CCCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCce
Confidence 334799999999999999999999999999999999999999999999999999999999999987543221 123589
Q ss_pred EEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEE
Q 001261 543 GLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLV 622 (1112)
Q Consensus 543 ~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vV 622 (1112)
+|||+||++||.|++..+..|+..+++.+..++||.....+...+..+++|||+||++|++++... ....+..+.+||
T Consensus 87 aLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~--~~~~l~~v~~lV 164 (572)
T PRK04537 87 ALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQH--KVVSLHACEICV 164 (572)
T ss_pred EEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhc--cccchhheeeeE
Confidence 999999999999999999999999999999999999999888888888999999999999988653 235688899999
Q ss_pred eccchhhhccCChhHHHHHHHhcCC--CCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchh
Q 001261 623 MDEADRMFDMGFEPQITRIVQNIRP--DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDR 700 (1112)
Q Consensus 623 iDEah~~~~~gf~~~i~~il~~~~~--~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k 700 (1112)
|||||+|++++|...+..|+..++. .+|+|+||||++..+..++..++.+|..+.+.........+.+.+.+.....+
T Consensus 165 iDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k 244 (572)
T PRK04537 165 LDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEEK 244 (572)
T ss_pred ecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHHH
Confidence 9999999999999999999999876 78999999999999999999999999877776666666677788877777778
Q ss_pred HHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCC
Q 001261 701 FLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDV 780 (1112)
Q Consensus 701 ~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi 780 (1112)
+..|+.++.. ....++||||+++..|+.|+..|...++.+..|||+|++.+|..+++.|++|.++|||||+++++||||
T Consensus 245 ~~~L~~ll~~-~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDi 323 (572)
T PRK04537 245 QTLLLGLLSR-SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHI 323 (572)
T ss_pred HHHHHHHHhc-ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCc
Confidence 8777777754 345689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhc
Q 001261 781 KELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELS 836 (1112)
Q Consensus 781 ~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~ 836 (1112)
|+|++||||++|.++..|+||+||+||.|..|.||+|+++.+...+..|.+.+...
T Consensus 324 p~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~ 379 (572)
T PRK04537 324 DGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQK 379 (572)
T ss_pred cCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999998888888887776543
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-58 Score=547.41 Aligned_cols=365 Identities=38% Similarity=0.673 Sum_probs=329.4
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCC-CCCCcEEEE
Q 001261 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAA-GDGPVGLIM 546 (1112)
Q Consensus 468 ~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~-~~~~~~LIl 546 (1112)
+|.+++|++.|++.|..+||..|||+|.++||.++.|+|+|+++|||||||++|++|++..+........ ...+++|||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999875432211 234689999
Q ss_pred ccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccc
Q 001261 547 APTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEA 626 (1112)
Q Consensus 547 ~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEa 626 (1112)
+||++||.|++..+..++..+++.+..++||.+...+...+..+++||||||++|++++... ...|+++.+||||||
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~---~~~l~~v~~lViDEa 158 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQN---AVKLDQVEILVLDEA 158 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcC---CcccccceEEEeecH
Confidence 99999999999999999999999999999999999998888889999999999999988653 357889999999999
Q ss_pred hhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHH
Q 001261 627 DRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLE 706 (1112)
Q Consensus 627 h~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~ 706 (1112)
|+|++++|...+..++..++..+|+|+||||++..+..++..++.+|..+.+.........+.+.+.+.....+...|..
T Consensus 159 h~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 238 (456)
T PRK10590 159 DRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQ 238 (456)
T ss_pred HHHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888877666666677777777666655555555
Q ss_pred HHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEE
Q 001261 707 LLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELV 786 (1112)
Q Consensus 707 ~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~V 786 (1112)
++.. ....++||||+++..|+.|+..|...++.+..+||+|++.+|..+++.|++|.++|||||+++++|||||+|++|
T Consensus 239 l~~~-~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~V 317 (456)
T PRK10590 239 MIGK-GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHV 317 (456)
T ss_pred HHHc-CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEE
Confidence 4433 345689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhc
Q 001261 787 INFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELS 836 (1112)
Q Consensus 787 I~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~ 836 (1112)
|||++|.++.+|+||+||+||+|..|.|++|++..+...+..|.+.|...
T Consensus 318 I~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~ 367 (456)
T PRK10590 318 VNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367 (456)
T ss_pred EEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999988888888877543
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-58 Score=559.19 Aligned_cols=363 Identities=38% Similarity=0.639 Sum_probs=332.9
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEE
Q 001261 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545 (1112)
Q Consensus 466 i~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LI 545 (1112)
..+|.+++|++.++++|..+||..|||+|.++||.++.|+|+|++|+||||||++|++|++..+... ..++++||
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~-----~~~~~~LI 79 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE-----LKAPQILV 79 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc-----cCCCeEEE
Confidence 3579999999999999999999999999999999999999999999999999999999999887542 24689999
Q ss_pred EccchhHHHHHHHHHHHHhhhc-CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEec
Q 001261 546 MAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (1112)
Q Consensus 546 l~PtreLa~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViD 624 (1112)
||||++||.|++..+..|...+ ++.++.++||.....++..+..+++|||+||++|++++.... ..|+++.+||||
T Consensus 80 L~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~---l~l~~l~~lVlD 156 (629)
T PRK11634 80 LAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGT---LDLSKLSGLVLD 156 (629)
T ss_pred EeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCC---cchhhceEEEec
Confidence 9999999999999999998776 799999999999999999999999999999999999987643 578899999999
Q ss_pred cchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHH
Q 001261 625 EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRL 704 (1112)
Q Consensus 625 Eah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~l 704 (1112)
|||.|++++|...+..|+..++..+|+++||||+|..+..++..++.+|..+.+.........+.+.+.......+...|
T Consensus 157 EAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L 236 (629)
T PRK11634 157 EADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEAL 236 (629)
T ss_pred cHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHHH
Confidence 99999999999999999999999999999999999999999999999998888876666666777777777777788888
Q ss_pred HHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCcc
Q 001261 705 LELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELE 784 (1112)
Q Consensus 705 l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~ 784 (1112)
..+|... ...++||||+++..+..|+..|...|+.+..+||+|++.+|..+++.|++|.++|||||+++++|||||+|+
T Consensus 237 ~~~L~~~-~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~ 315 (629)
T PRK11634 237 VRFLEAE-DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERIS 315 (629)
T ss_pred HHHHHhc-CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCC
Confidence 8777653 456899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhcc
Q 001261 785 LVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSE 837 (1112)
Q Consensus 785 ~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~ 837 (1112)
+|||||+|.+++.|+||+|||||+|+.|.|++|+++.+...+..|.+.+....
T Consensus 316 ~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i 368 (629)
T PRK11634 316 LVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTI 368 (629)
T ss_pred EEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999988888888887766543
|
|
| >KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-59 Score=513.44 Aligned_cols=368 Identities=34% Similarity=0.584 Sum_probs=323.0
Q ss_pred CCcccccccCCCCHHHHHHHH-HCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCC-CCCCCC
Q 001261 463 PKPIKTWHQTGLTSKIMETIR-KLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPP-VAAGDG 540 (1112)
Q Consensus 463 p~pi~~~~~~~L~~~l~~~l~-~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~-~~~~~~ 540 (1112)
|-.-..|..+||++.+...|+ .+++..||.+|.++||.|+.|+|++|.++||||||++|++|++++|....+ +....|
T Consensus 132 ~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G 211 (708)
T KOG0348|consen 132 PFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDG 211 (708)
T ss_pred ccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCC
Confidence 444567999999999999998 599999999999999999999999999999999999999999999987644 344579
Q ss_pred CcEEEEccchhHHHHHHHHHHHHhhhcC-ceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCce
Q 001261 541 PVGLIMAPTRELVQQIHSDIRKFAKVMG-VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVT 619 (1112)
Q Consensus 541 ~~~LIl~PtreLa~Q~~~~~~~~~~~~~-i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~ 619 (1112)
+.+||||||||||.|+|+.++++.+.+. |-.+.+.||.........|.+|++|+|+|||+|+|+|.+. ..+.++.+.
T Consensus 212 ~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT--~~i~~s~LR 289 (708)
T KOG0348|consen 212 PYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNT--KSIKFSRLR 289 (708)
T ss_pred ceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhcc--chheeeeee
Confidence 9999999999999999999999988764 4456788999999999999999999999999999999764 346678899
Q ss_pred EEEeccchhhhccCChhHHHHHHHhcC-------------CCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcC------
Q 001261 620 YLVMDEADRMFDMGFEPQITRIVQNIR-------------PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGG------ 680 (1112)
Q Consensus 620 ~vViDEah~~~~~gf~~~i~~il~~~~-------------~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~------ 680 (1112)
+||+||||+++++||...|..|+..+. +..|.+|+|||++..+..|+...+.+|+.|..+.
T Consensus 290 wlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~ 369 (708)
T KOG0348|consen 290 WLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLN 369 (708)
T ss_pred EEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcC
Confidence 999999999999999999999998772 2478999999999999999999999999887221
Q ss_pred -------------------cccccCCccEEEEecccchhHHHHHHHHHhhh---cCCeEEEEeCCHHHHHHHHHHHHhc-
Q 001261 681 -------------------RSVVNKDITQLVEVRPESDRFLRLLELLGEWY---EKGKILIFVHSQEKCDALFRDLLKH- 737 (1112)
Q Consensus 681 -------------------~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~---~~~~vLIF~~s~~~~~~l~~~L~~~- 737 (1112)
...++..+.|.+.+++..-++..|..+|.+.. ...++|||+.+.+.++.-+..|...
T Consensus 370 p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l 449 (708)
T KOG0348|consen 370 PKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEAL 449 (708)
T ss_pred cchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhh
Confidence 02234457788888888888888888887654 3458999999999999888887653
Q ss_pred ---------------------CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHh
Q 001261 738 ---------------------GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYE 796 (1112)
Q Consensus 738 ---------------------g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~ 796 (1112)
+..++-+||+|.|++|..+++.|......||+||||++||||+|+|.+||.||+|.+++
T Consensus 450 ~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~a 529 (708)
T KOG0348|consen 450 LSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTA 529 (708)
T ss_pred hcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHH
Confidence 35688999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccCCCCCccEEEEEecCCccCchHHHHHH
Q 001261 797 DYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKA 832 (1112)
Q Consensus 797 ~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~ 832 (1112)
+|+||||||+|+|.+|.+++|+.|.+..++..|.+.
T Consensus 530 dylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 530 DYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKH 565 (708)
T ss_pred HHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhh
Confidence 999999999999999999999999988766555443
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-58 Score=546.81 Aligned_cols=359 Identities=36% Similarity=0.617 Sum_probs=328.0
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEE
Q 001261 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (1112)
Q Consensus 467 ~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl 546 (1112)
.+|..++|++.+++.|..+||..|||+|.++||.++.|+|+|++||||||||++|++|++.++... ..++++|||
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~-----~~~~~~lil 78 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK-----RFRVQALVL 78 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc-----cCCceEEEE
Confidence 579999999999999999999999999999999999999999999999999999999999987542 235689999
Q ss_pred ccchhHHHHHHHHHHHHhhhc-CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEecc
Q 001261 547 APTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDE 625 (1112)
Q Consensus 547 ~PtreLa~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDE 625 (1112)
|||++||.|++..+..++..+ ++.+..++||.+...++..+..+++|+||||++|.+++.... ..+.++.+|||||
T Consensus 79 ~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~---~~l~~l~~lViDE 155 (460)
T PRK11776 79 CPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGT---LDLDALNTLVLDE 155 (460)
T ss_pred eCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCC---ccHHHCCEEEEEC
Confidence 999999999999999988765 789999999999999999999999999999999999987643 5688999999999
Q ss_pred chhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHH
Q 001261 626 ADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLL 705 (1112)
Q Consensus 626 ah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll 705 (1112)
||+|++++|...+..++..+++.+|+|+||||+|+.+..++..++.+|..+.+.... ....+.+.+.......+...|.
T Consensus 156 ad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~k~~~l~ 234 (460)
T PRK11776 156 ADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSPDERLPALQ 234 (460)
T ss_pred HHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCcHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988876544 3445777777777777888887
Q ss_pred HHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccE
Q 001261 706 ELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELEL 785 (1112)
Q Consensus 706 ~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~ 785 (1112)
.+|.. ...+++||||+++..|+.++..|...++.+..+||+|++.+|..+++.|++|.++|||||+++++|||||++++
T Consensus 235 ~ll~~-~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~ 313 (460)
T PRK11776 235 RLLLH-HQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEA 313 (460)
T ss_pred HHHHh-cCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCe
Confidence 77764 34578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhh
Q 001261 786 VINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALEL 835 (1112)
Q Consensus 786 VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~ 835 (1112)
||||++|.++..|+||+|||||+|..|.||+|+++.+...+..|.+.+..
T Consensus 314 VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~ 363 (460)
T PRK11776 314 VINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGR 363 (460)
T ss_pred EEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999888777777776654
|
|
| >KOG0347 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-58 Score=510.24 Aligned_cols=373 Identities=32% Similarity=0.528 Sum_probs=324.9
Q ss_pred CCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC-CCEEEEcCCCChHHHHHHHHHHHHHhcCCCC------
Q 001261 463 PKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG-RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPV------ 535 (1112)
Q Consensus 463 p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g-~dvii~a~TGsGKT~~~llp~l~~l~~~~~~------ 535 (1112)
+..++.|.+|+|+..++.+|..+||..||+||.-.||+++.| .|+|+.|.||||||++|.+||+..+......
T Consensus 177 ~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~ 256 (731)
T KOG0347|consen 177 KVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSN 256 (731)
T ss_pred ccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhh
Confidence 556889999999999999999999999999999999999999 7999999999999999999999854432111
Q ss_pred --CCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCccc
Q 001261 536 --AAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKIT 613 (1112)
Q Consensus 536 --~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~ 613 (1112)
.....|.+||++|||+||.|+...|..++...+|++..++||.....|-..|...++|||+|||||+.++...+..+.
T Consensus 257 ~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~ 336 (731)
T KOG0347|consen 257 TSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLG 336 (731)
T ss_pred HHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhh
Confidence 112234599999999999999999999999999999999999999999889998899999999999999998877778
Q ss_pred ccCCceEEEeccchhhhccCChhHHHHHHHhcC-----CCCcEEEEeccccH---------------------HHHHHHH
Q 001261 614 NLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR-----PDRQTVLFSATFPR---------------------QVEILAR 667 (1112)
Q Consensus 614 ~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~-----~~~q~il~SAT~~~---------------------~~~~l~~ 667 (1112)
+|..+.+|||||||||+..|+...+..|+..+. ..+|+++||||++- .++.++.
T Consensus 337 ~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk 416 (731)
T KOG0347|consen 337 NFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMK 416 (731)
T ss_pred hhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHH
Confidence 899999999999999999999999999988775 45899999999752 1333443
Q ss_pred H--hcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeec
Q 001261 668 K--VLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLH 745 (1112)
Q Consensus 668 ~--~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ih 745 (1112)
. |...|..|.+.....+...+....+.|+...|-.+|+-+|..+ +|++|||||++..+..|+-+|...+++.+.||
T Consensus 417 ~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ry--PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LH 494 (731)
T KOG0347|consen 417 KIGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRY--PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLH 494 (731)
T ss_pred HhCccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEeec--CCceEEEechHHHHHHHHHHHhhcCCCCchhh
Confidence 3 2346666666555555555555555566666666666666553 68999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCc
Q 001261 746 GAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKY 825 (1112)
Q Consensus 746 g~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~ 825 (1112)
+.|.|.+|...++.|++....|||||+||+||||||+|.+||||-.|.+.+.|+||.|||+|++..|..+.|+.|.+...
T Consensus 495 A~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~ 574 (731)
T KOG0347|consen 495 ASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGP 574 (731)
T ss_pred HHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhcc
Q 001261 826 SPDLVKALELSE 837 (1112)
Q Consensus 826 ~~~i~~~l~~~~ 837 (1112)
+..|++-|+...
T Consensus 575 ~~KL~ktL~k~~ 586 (731)
T KOG0347|consen 575 LKKLCKTLKKKE 586 (731)
T ss_pred HHHHHHHHhhcc
Confidence 999999887644
|
|
| >KOG0346 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-57 Score=490.07 Aligned_cols=367 Identities=31% Similarity=0.519 Sum_probs=332.2
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCC-CCCCCCcEEE
Q 001261 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPV-AAGDGPVGLI 545 (1112)
Q Consensus 467 ~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~-~~~~~~~~LI 545 (1112)
.+|+++||.+.|++++.++||.+||-||..+||.++.|+|+++.|.||||||.+|++|+++.|+..... ....+|.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 689999999999999999999999999999999999999999999999999999999999999876544 3445899999
Q ss_pred EccchhHHHHHHHHHHHHhhhcC--ceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEe
Q 001261 546 MAPTRELVQQIHSDIRKFAKVMG--VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVM 623 (1112)
Q Consensus 546 l~PtreLa~Q~~~~~~~~~~~~~--i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vVi 623 (1112)
||||++||.|+|..+.++...++ ++++-+....+....-..|...++|||+||+.|+.++.... ...+..++++||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~--~~~~~~l~~LVv 176 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGV--LEYLDSLSFLVV 176 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhcc--chhhhheeeEEe
Confidence 99999999999999999877653 56666665666665557777889999999999999987643 367889999999
Q ss_pred ccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccc-cCCccEEEEecccchhHH
Q 001261 624 DEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVV-NKDITQLVEVRPESDRFL 702 (1112)
Q Consensus 624 DEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~-~~~i~q~~~~~~~~~k~~ 702 (1112)
||||.|+..||...+..+..++++..|++|||||+..++..+-..+|++|+.+.+.....+ ...+.|++..+.+.+|+.
T Consensus 177 DEADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKfl 256 (569)
T KOG0346|consen 177 DEADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFL 256 (569)
T ss_pred chhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHH
Confidence 9999999999999999999999999999999999999999999999999998888766554 456788888899999999
Q ss_pred HHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC----------
Q 001261 703 RLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS---------- 772 (1112)
Q Consensus 703 ~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~---------- 772 (1112)
.++.+|.-..-.|++|||+|++..|..|.-+|...|++.+++.|.||...|-.+++.|..|-++||||||
T Consensus 257 llyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~ee 336 (569)
T KOG0346|consen 257 LLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEE 336 (569)
T ss_pred HHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhc
Confidence 9999998777789999999999999999999999999999999999999999999999999999999998
Q ss_pred -------------------------cccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchH
Q 001261 773 -------------------------VAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSP 827 (1112)
Q Consensus 773 -------------------------v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~ 827 (1112)
-++||||+.+|.+|||||+|.+...|+||+|||+|++++|.+++|+.+.+.....
T Consensus 337 e~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~ 416 (569)
T KOG0346|consen 337 EVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKE 416 (569)
T ss_pred cccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhh
Confidence 1458999999999999999999999999999999999999999999998887666
Q ss_pred HHHHHHhh
Q 001261 828 DLVKALEL 835 (1112)
Q Consensus 828 ~i~~~l~~ 835 (1112)
.|...+..
T Consensus 417 ~le~~~~d 424 (569)
T KOG0346|consen 417 SLESILKD 424 (569)
T ss_pred HHHHHHhh
Confidence 66666654
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-56 Score=530.23 Aligned_cols=362 Identities=36% Similarity=0.586 Sum_probs=324.1
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc
Q 001261 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547 (1112)
Q Consensus 468 ~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~ 547 (1112)
+|++++|++.+++.|..+||..||++|.++||.++.|+|+|+++|||+|||++|++|+++++...+.. ...++++|||+
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~-~~~~~~~lil~ 80 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRR-KSGPPRILILT 80 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcccc-CCCCceEEEEC
Confidence 69999999999999999999999999999999999999999999999999999999999998765322 23357899999
Q ss_pred cchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccch
Q 001261 548 PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD 627 (1112)
Q Consensus 548 PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah 627 (1112)
||++||.|++..+..++..+++.+..++||.....+...+..+++|||+||++|++++.... +.+.++.+|||||||
T Consensus 81 Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~---~~~~~v~~lViDEah 157 (434)
T PRK11192 81 PTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEEN---FDCRAVETLILDEAD 157 (434)
T ss_pred CcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC---cCcccCCEEEEECHH
Confidence 99999999999999999999999999999999998888888889999999999999987643 567889999999999
Q ss_pred hhhccCChhHHHHHHHhcCCCCcEEEEeccccH-HHHHHHHHhcCCCeEEEEcCcccccCCccEEEEeccc-chhHHHHH
Q 001261 628 RMFDMGFEPQITRIVQNIRPDRQTVLFSATFPR-QVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPE-SDRFLRLL 705 (1112)
Q Consensus 628 ~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~-~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~-~~k~~~ll 705 (1112)
+|++++|...+..+...++...|+++||||++. .+..++..++.+|+.+.+.........+.+.+..... ..+...|.
T Consensus 158 ~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~ 237 (434)
T PRK11192 158 RMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLC 237 (434)
T ss_pred HHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHH
Confidence 999999999999999999999999999999985 5788999999999988876665556667777665554 34555555
Q ss_pred HHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccE
Q 001261 706 ELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELEL 785 (1112)
Q Consensus 706 ~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~ 785 (1112)
.++.. ...+++||||+++..|+.|+..|...++.+..+||+|++.+|..++..|++|.++|||||+++++|||||++++
T Consensus 238 ~l~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~ 316 (434)
T PRK11192 238 HLLKQ-PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSH 316 (434)
T ss_pred HHHhc-CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCE
Confidence 55543 34579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHh
Q 001261 786 VINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALE 834 (1112)
Q Consensus 786 VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~ 834 (1112)
||||++|.+...|+||+||+||+|..|.|++|++..|...+..+.+++.
T Consensus 317 VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~ 365 (434)
T PRK11192 317 VINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIE 365 (434)
T ss_pred EEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999888777777766554
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-55 Score=522.02 Aligned_cols=369 Identities=35% Similarity=0.585 Sum_probs=330.1
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCC--CCCCc
Q 001261 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAA--GDGPV 542 (1112)
Q Consensus 465 pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~--~~~~~ 542 (1112)
....|..++|++.|++.|..+||..||++|.++|+.++.|+|+|++++||||||++|++|++..+...+.... ...++
T Consensus 85 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~ 164 (475)
T PRK01297 85 GKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPR 164 (475)
T ss_pred CCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCce
Confidence 3468999999999999999999999999999999999999999999999999999999999999876542211 12578
Q ss_pred EEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHh-cCCeEEEeCchHHHHHHHhcCCcccccCCceEE
Q 001261 543 GLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELK-RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYL 621 (1112)
Q Consensus 543 ~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~-~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~v 621 (1112)
+|||+||++||.|++..+..++..+++.+..++||.....+...+. ..++|||+||++|++++... ...|+++.+|
T Consensus 165 aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~---~~~l~~l~~l 241 (475)
T PRK01297 165 ALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRG---EVHLDMVEVM 241 (475)
T ss_pred EEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcC---CcccccCceE
Confidence 9999999999999999999999999999999999998888877775 45899999999999887643 3578899999
Q ss_pred EeccchhhhccCChhHHHHHHHhcCC--CCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccch
Q 001261 622 VMDEADRMFDMGFEPQITRIVQNIRP--DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESD 699 (1112)
Q Consensus 622 ViDEah~~~~~gf~~~i~~il~~~~~--~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~ 699 (1112)
||||||++++++|...+..|+..++. .+|+|+||||++..+..++..++.+|..+.+.........+.+.+.......
T Consensus 242 ViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 321 (475)
T PRK01297 242 VLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSD 321 (475)
T ss_pred EechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchh
Confidence 99999999999999999999998854 5799999999999999999999999988877766666667777777777777
Q ss_pred hHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCC
Q 001261 700 RFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLD 779 (1112)
Q Consensus 700 k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlD 779 (1112)
+...|..++.. ....++||||+++..|+.++..|...++.+..+||++++.+|..+++.|++|.+.|||||+++++|||
T Consensus 322 k~~~l~~ll~~-~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GID 400 (475)
T PRK01297 322 KYKLLYNLVTQ-NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIH 400 (475)
T ss_pred HHHHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCc
Confidence 77777766654 23469999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhcc
Q 001261 780 VKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSE 837 (1112)
Q Consensus 780 i~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~ 837 (1112)
|+++++||+|++|.+...|+||+||+||.|..|.+|+|+++.|..++..+.+.+....
T Consensus 401 i~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~ 458 (475)
T PRK01297 401 IDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKI 458 (475)
T ss_pred ccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999998888888888876653
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-53 Score=497.85 Aligned_cols=368 Identities=33% Similarity=0.570 Sum_probs=324.8
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEE
Q 001261 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGL 544 (1112)
Q Consensus 465 pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~L 544 (1112)
.+.+|.+++|++.+.+.|..+||..|+|+|.++|+.++.|+|+|++||||||||++|++|++.++... ..++++|
T Consensus 26 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~-----~~~~~~l 100 (401)
T PTZ00424 26 IVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD-----LNACQAL 100 (401)
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC-----CCCceEE
Confidence 35789999999999999999999999999999999999999999999999999999999999887532 2467899
Q ss_pred EEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEec
Q 001261 545 IMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (1112)
Q Consensus 545 Il~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViD 624 (1112)
||+||++|+.|++..+..++...++.+..++||.....+...+..+++|+|+||++|.+++.... ..++++++||||
T Consensus 101 il~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~---~~l~~i~lvViD 177 (401)
T PTZ00424 101 ILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRH---LRVDDLKLFILD 177 (401)
T ss_pred EECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCC---cccccccEEEEe
Confidence 99999999999999999999888899999999998888888888889999999999998887543 468899999999
Q ss_pred cchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccc-hhHHH
Q 001261 625 EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPES-DRFLR 703 (1112)
Q Consensus 625 Eah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~-~k~~~ 703 (1112)
|||++++.+|...+..++..+++..|+|+||||+|+.+..+...++.+|..+.+.........+.+.+...... .+...
T Consensus 178 Eah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (401)
T PTZ00424 178 EADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDT 257 (401)
T ss_pred cHHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998777665555555566665554432 34444
Q ss_pred HHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCc
Q 001261 704 LLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKEL 783 (1112)
Q Consensus 704 ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v 783 (1112)
+..++.. ....++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++
T Consensus 258 l~~~~~~-~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v 336 (401)
T PTZ00424 258 LCDLYET-LTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQV 336 (401)
T ss_pred HHHHHHh-cCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccC
Confidence 4444433 345689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhccCCCC
Q 001261 784 ELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVP 841 (1112)
Q Consensus 784 ~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp 841 (1112)
++||+|++|.+...|+||+||+||.|..|.|++|+++.+...+..+.+.+.......|
T Consensus 337 ~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~ 394 (401)
T PTZ00424 337 SLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMP 394 (401)
T ss_pred CEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccC
Confidence 9999999999999999999999999999999999999888888887777665444443
|
|
| >KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-53 Score=445.37 Aligned_cols=372 Identities=31% Similarity=0.529 Sum_probs=322.7
Q ss_pred CcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCC
Q 001261 464 KPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGP 541 (1112)
Q Consensus 464 ~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g--~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~ 541 (1112)
-.+++|.+|+|.+.+++.|..++|.+|+.||..|+|.++.. +++|.++..|+|||.+|.|.||..+.-. ...|
T Consensus 87 yS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~-----~~~P 161 (477)
T KOG0332|consen 87 YSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD-----VVVP 161 (477)
T ss_pred cccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc-----ccCC
Confidence 45789999999999999999999999999999999999976 7899999999999999999999876532 2368
Q ss_pred cEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEE
Q 001261 542 VGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYL 621 (1112)
Q Consensus 542 ~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~v 621 (1112)
+++.|+|||+||.|+.+.+.+.++..++.+...+.|.... .-..+ ..+|||+|||.+.+++..- +..++..+.++
T Consensus 162 Q~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~-rG~~i--~eqIviGTPGtv~Dlm~kl--k~id~~kikvf 236 (477)
T KOG0332|consen 162 QCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAK-RGNKL--TEQIVIGTPGTVLDLMLKL--KCIDLEKIKVF 236 (477)
T ss_pred CceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccc-cCCcc--hhheeeCCCccHHHHHHHH--HhhChhhceEE
Confidence 9999999999999999999999998888888777766111 00011 1489999999999998652 34678899999
Q ss_pred Eeccchhhhcc-CChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEeccc-ch
Q 001261 622 VMDEADRMFDM-GFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPE-SD 699 (1112)
Q Consensus 622 ViDEah~~~~~-gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~-~~ 699 (1112)
|+||||.|++. ||.++-..|...++++.|+|+||||+...+..|+..++.+|..+.+........+|.|++..+.. .+
T Consensus 237 VlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~ 316 (477)
T KOG0332|consen 237 VLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDD 316 (477)
T ss_pred EecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhh
Confidence 99999998875 69999999999999999999999999999999999999999999999988999999998877765 57
Q ss_pred hHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCC
Q 001261 700 RFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLD 779 (1112)
Q Consensus 700 k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlD 779 (1112)
|+..|.. |.....-|+.||||.++..+..|+..|...|+.|.++||.|...+|..++..|+.|..+|||+|+|++||||
T Consensus 317 K~~~l~~-lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiD 395 (477)
T KOG0332|consen 317 KYQALVN-LYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGID 395 (477)
T ss_pred HHHHHHH-HHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccc
Confidence 8888777 444456789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEeCCCC------CHhHHHHHhcccCCCCCccEEEEEecCC-ccCchHHHHHHHhhcc-CCCChhHHH
Q 001261 780 VKELELVINFDAPN------HYEDYVHRVGRTGRAGRKGCAITFISEE-DAKYSPDLVKALELSE-QVVPDDLKA 846 (1112)
Q Consensus 780 i~~v~~VI~~d~p~------s~~~y~QriGR~gR~G~~g~~i~~~~~~-d~~~~~~i~~~l~~~~-~~vp~~l~~ 846 (1112)
++.|++|||||+|. +++.|+||||||||.|++|.+|.|+... ....+..|.+..+... ...|.++.+
T Consensus 396 v~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~~d~~E 470 (477)
T KOG0332|consen 396 VAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDPDDLDE 470 (477)
T ss_pred cceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecCCccHHH
Confidence 99999999999997 5899999999999999999999999754 4445556777665443 344555443
|
|
| >KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-54 Score=461.03 Aligned_cols=363 Identities=33% Similarity=0.553 Sum_probs=342.8
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEE
Q 001261 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545 (1112)
Q Consensus 466 i~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LI 545 (1112)
-..|..+||+..++++|.+.||..|||||+..||.||.++|++..+.||||||.||++||++++.... ..|.++||
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s----~~g~Rali 95 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS----QTGLRALI 95 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc----ccccceee
Confidence 36799999999999999999999999999999999999999999999999999999999999987642 35789999
Q ss_pred EccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEecc
Q 001261 546 MAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDE 625 (1112)
Q Consensus 546 l~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDE 625 (1112)
++||++||.|....++.+++..++++.+++||....+|...|..+.+||++|||+++.+.... ...|+.+.|||+||
T Consensus 96 lsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem---~l~l~sveyVVfdE 172 (529)
T KOG0337|consen 96 LSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEM---TLTLSSVEYVVFDE 172 (529)
T ss_pred ccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehhe---eccccceeeeeehh
Confidence 999999999999999999999999999999999999999999999999999999997765432 25688999999999
Q ss_pred chhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHH
Q 001261 626 ADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLL 705 (1112)
Q Consensus 626 ah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll 705 (1112)
||+++.|||.+++..++..++.++|+++||||+|..+-.+++..+.+|+.+.+...+.+...+...+..+...+|...|+
T Consensus 173 adrlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl 252 (529)
T KOG0337|consen 173 ADRLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALL 252 (529)
T ss_pred hhHHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998888888888888888888999999999
Q ss_pred HHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccE
Q 001261 706 ELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELEL 785 (1112)
Q Consensus 706 ~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~ 785 (1112)
.++.......+++|||.+..+++.+...|...|+.+..++|.|++.-|...+..|..+...+||.|++++||+|||.+..
T Consensus 253 ~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldn 332 (529)
T KOG0337|consen 253 SILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDN 332 (529)
T ss_pred HHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccc
Confidence 99998877778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhh
Q 001261 786 VINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALEL 835 (1112)
Q Consensus 786 VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~ 835 (1112)
|||||+|.+...|+||+||+.|+|+.|++|.|+.+.+..++.+|.-.|..
T Consensus 333 vinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr 382 (529)
T KOG0337|consen 333 VINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGR 382 (529)
T ss_pred cccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCC
Confidence 99999999999999999999999999999999999999999998887765
|
|
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-53 Score=476.54 Aligned_cols=402 Identities=33% Similarity=0.547 Sum_probs=349.5
Q ss_pred HHHHHHhhcCceeccCCCCCccccccc----CCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHH
Q 001261 445 EVSAYRKQLELKIHGKDVPKPIKTWHQ----TGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 445 ~~~~~r~~~~~~~~~~~~p~pi~~~~~----~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~ 520 (1112)
.....|+.+.+.+.|..+|+|+.+|.. +.....|++.+...+|..|+|+|.+|||.++.+++++.|+|||||||++
T Consensus 110 ~~~~~Rk~~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtla 189 (593)
T KOG0344|consen 110 KLLGIRKSNKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLA 189 (593)
T ss_pred ccccchhcceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhh
Confidence 455678888899999999999999997 6788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh--hhcCceEEEEeCCCChH-HHHHHHhcCCeEEEeC
Q 001261 521 FVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA--KVMGVRCVPVYGGSGVA-QQISELKRGTEIVVCT 597 (1112)
Q Consensus 521 ~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~--~~~~i~~~~~~gg~~~~-~~~~~l~~~~~IvV~T 597 (1112)
|++|++.+|..........|-+++||.||++||.|+|.++.++. ...++.+.......... .........++|+|.|
T Consensus 190 f~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~T 269 (593)
T KOG0344|consen 190 FNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILIST 269 (593)
T ss_pred hhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcC
Confidence 99999999987543233457899999999999999999999998 55555544332221111 1111122347999999
Q ss_pred chHHHHHHHhcCCcccccCCceEEEeccchhhhcc-CChhHHHHHHHhcC-CCCcEEEEeccccHHHHHHHHHhcCCCeE
Q 001261 598 PGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDM-GFEPQITRIVQNIR-PDRQTVLFSATFPRQVEILARKVLNKPVE 675 (1112)
Q Consensus 598 p~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~-gf~~~i~~il~~~~-~~~q~il~SAT~~~~~~~l~~~~~~~p~~ 675 (1112)
|-+|..++.... -..+|..+.++|+||||++++. .|..|+..|+..+. ++..+-+||||++..++.++...+.+++.
T Consensus 270 P~ri~~~~~~~~-~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~ 348 (593)
T KOG0344|consen 270 PMRIVGLLGLGK-LNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKR 348 (593)
T ss_pred HHHHHHHhcCCC-ccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhcccee
Confidence 999998886532 2247899999999999999998 89999999988764 56677889999999999999999999999
Q ss_pred EEEcCcccccCCccEEEEe-cccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHH-HhcCCCeeeecCCCCHHHH
Q 001261 676 IQVGGRSVVNKDITQLVEV-RPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDL-LKHGYPCLSLHGAKDQTDR 753 (1112)
Q Consensus 676 i~i~~~~~~~~~i~q~~~~-~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L-~~~g~~~~~ihg~~~~~~R 753 (1112)
+.++..+.....|.|-..+ .....|+..+.+++.... ..++|||+.+.+.|..|+..| .-.++++.+|||..++.+|
T Consensus 349 vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~-~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qr 427 (593)
T KOG0344|consen 349 VIVGLRNSANETVDQELVFCGSEKGKLLALRQLVASGF-KPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQR 427 (593)
T ss_pred EEEecchhHhhhhhhhheeeecchhHHHHHHHHHhccC-CCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHH
Confidence 9999988887788776544 456688888888888754 469999999999999999999 6678999999999999999
Q ss_pred HHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHH
Q 001261 754 ESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKAL 833 (1112)
Q Consensus 754 ~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l 833 (1112)
..+++.|+.|++.|||||++++||||+.++++|||||+|.+...|+|||||+||+|+.|.||+||+..|..++..|+..+
T Consensus 428 de~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~ 507 (593)
T KOG0344|consen 428 DETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVM 507 (593)
T ss_pred HHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCChhHHHHH
Q 001261 834 ELSEQVVPDDLKALA 848 (1112)
Q Consensus 834 ~~~~~~vp~~l~~~~ 848 (1112)
..++.+||.++..|.
T Consensus 508 ~~sG~evpe~~m~~~ 522 (593)
T KOG0344|consen 508 EQSGCEVPEKIMGIK 522 (593)
T ss_pred HHcCCcchHHHHhhh
Confidence 999999999876554
|
|
| >KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-52 Score=450.62 Aligned_cols=368 Identities=34% Similarity=0.580 Sum_probs=340.0
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEE
Q 001261 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545 (1112)
Q Consensus 466 i~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LI 545 (1112)
+.+|.+++|++.|++.+...||.+|+.||+.||+.+..|.|+++.+++|+|||.+|+++++.++.. .....++||
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~-----~~ke~qali 99 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDM-----SVKETQALI 99 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCc-----chHHHHHHH
Confidence 458999999999999999999999999999999999999999999999999999999999988733 123568999
Q ss_pred EccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhc-CCeEEEeCchHHHHHHHhcCCcccccCCceEEEec
Q 001261 546 MAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (1112)
Q Consensus 546 l~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViD 624 (1112)
++||++||.|+......++..+++++..++||.....+...+.. +++|+|+|||++.+++... ....+.+.++|+|
T Consensus 100 laPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~---~l~~~~iKmfvlD 176 (397)
T KOG0327|consen 100 LAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG---SLSTDGIKMFVLD 176 (397)
T ss_pred hcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc---cccccceeEEeec
Confidence 99999999999999999999999999999999998866655554 6899999999999998654 2456779999999
Q ss_pred cchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHH
Q 001261 625 EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRL 704 (1112)
Q Consensus 625 Eah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~l 704 (1112)
|||.|+..||..++..|+.+++++.|+++||||+|.++..+...|+.+|+.+.+.........+.|++.-.....|+..|
T Consensus 177 EaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l 256 (397)
T KOG0327|consen 177 EADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEKLDTL 256 (397)
T ss_pred chHhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccccccHH
Confidence 99999999999999999999999999999999999999999999999999999998888888899988877777788888
Q ss_pred HHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCcc
Q 001261 705 LELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELE 784 (1112)
Q Consensus 705 l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~ 784 (1112)
..+.. ...+.+||||+...+..|...|..+++.+..+||.|.+.+|..++..|+.|..+|||.|+.+++||||..+.
T Consensus 257 ~dl~~---~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~s 333 (397)
T KOG0327|consen 257 CDLYR---RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVS 333 (397)
T ss_pred HHHHH---hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcc
Confidence 88887 457899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhH
Q 001261 785 LVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDL 844 (1112)
Q Consensus 785 ~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp~~l 844 (1112)
+||||++|...++|+||+||+||.|.+|.++.|++..+...+.++.+++.......|...
T Consensus 334 lvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~~ 393 (397)
T KOG0327|consen 334 LVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSNF 393 (397)
T ss_pred eeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccch
Confidence 999999999999999999999999999999999999999999999999887777777643
|
|
| >KOG4284 consensus DEAD box protein [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-51 Score=460.75 Aligned_cols=351 Identities=30% Similarity=0.510 Sum_probs=316.0
Q ss_pred CCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCc
Q 001261 463 PKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPV 542 (1112)
Q Consensus 463 p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~ 542 (1112)
|.-...|+++-|...++..|+..+|..||+||..|||+++++.|+||++..|+|||++|.+.++..+.- ....++
T Consensus 21 ~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~-----~~~~~q 95 (980)
T KOG4284|consen 21 SNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDS-----RSSHIQ 95 (980)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCc-----ccCcce
Confidence 555578999999999999999999999999999999999999999999999999999999888876543 235789
Q ss_pred EEEEccchhHHHHHHHHHHHHhhhc-CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEE
Q 001261 543 GLIMAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYL 621 (1112)
Q Consensus 543 ~LIl~PtreLa~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~v 621 (1112)
.|||+|||+||.||...+.+++..| |++|...+||+....+...|+. |.|+|+|||+|..++... .++..++.++
T Consensus 96 ~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~---~~n~s~vrlf 171 (980)
T KOG4284|consen 96 KVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELG---AMNMSHVRLF 171 (980)
T ss_pred eEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhc---CCCccceeEE
Confidence 9999999999999999999998855 8999999999999988888776 899999999999998764 4788999999
Q ss_pred EeccchhhhccC-ChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccc--
Q 001261 622 VMDEADRMFDMG-FEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPES-- 698 (1112)
Q Consensus 622 ViDEah~~~~~g-f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~-- 698 (1112)
||||||.|++.+ |..+|..|+..++..+|++.||||.|..+..++.++|.+|..|......+....|.|++......
T Consensus 172 VLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nn 251 (980)
T KOG4284|consen 172 VLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNN 251 (980)
T ss_pred EeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcc
Confidence 999999999854 99999999999999999999999999999999999999999999888888888899988665433
Q ss_pred ------hhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC
Q 001261 699 ------DRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS 772 (1112)
Q Consensus 699 ------~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~ 772 (1112)
.|+..|-.++.. ++-.+.||||+.+..|+-++.+|...|+.|.+|.|.|.|.+|..++..+++-.++|||+|+
T Consensus 252 sveemrlklq~L~~vf~~-ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTD 330 (980)
T KOG4284|consen 252 SVEEMRLKLQKLTHVFKS-IPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTD 330 (980)
T ss_pred hHHHHHHHHHHHHHHHhh-CchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecc
Confidence 133333333333 3456899999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCcc
Q 001261 773 VAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823 (1112)
Q Consensus 773 v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~ 823 (1112)
..+||||-++|++|||.|+|.+.++|.|||||+||.|..|.+++|+.....
T Consensus 331 LtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 331 LTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred hhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 999999999999999999999999999999999999999999999976543
|
|
| >KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-49 Score=430.42 Aligned_cols=377 Identities=28% Similarity=0.465 Sum_probs=302.9
Q ss_pred CHHHHHHHHHCCCCCChHHHHHHHHHHH---------cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEE
Q 001261 475 TSKIMETIRKLNYEKPMPIQAQALPVIM---------SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545 (1112)
Q Consensus 475 ~~~l~~~l~~~~~~~pt~iQ~~ai~~il---------~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LI 545 (1112)
...+...|.++++...+|+|.+.+|+++ .++|++|.||||||||++|.+|+++.+...+- +..+|||
T Consensus 145 ea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v----~~LRavV 220 (620)
T KOG0350|consen 145 EATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPV----KRLRAVV 220 (620)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCc----cceEEEE
Confidence 3445677899999999999999999996 25899999999999999999999998876532 2468999
Q ss_pred EccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcC-----CeEEEeCchHHHHHHHhcCCcccccCCceE
Q 001261 546 MAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRG-----TEIVVCTPGRMIDILCTSGGKITNLRRVTY 620 (1112)
Q Consensus 546 l~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~-----~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~ 620 (1112)
|+||++|+.|++.+|..++...|+.|+.+.|..+.......|... .+|+|+|||||.++|.+. +-++|+++.|
T Consensus 221 ivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~--k~f~Lk~Lrf 298 (620)
T KOG0350|consen 221 IVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNT--KSFDLKHLRF 298 (620)
T ss_pred EeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCC--CCcchhhceE
Confidence 999999999999999999999999988888888877777776642 389999999999999753 4478999999
Q ss_pred EEeccchhhhccCC---hhHHHHHHHhc-------------------------------CCCCcEEEEeccccHHHHHHH
Q 001261 621 LVMDEADRMFDMGF---EPQITRIVQNI-------------------------------RPDRQTVLFSATFPRQVEILA 666 (1112)
Q Consensus 621 vViDEah~~~~~gf---~~~i~~il~~~-------------------------------~~~~q~il~SAT~~~~~~~l~ 666 (1112)
+||||||||++..| .+.++..+... .+..+.++||||+...-..+.
T Consensus 299 LVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~ 378 (620)
T KOG0350|consen 299 LVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLK 378 (620)
T ss_pred EEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHh
Confidence 99999999987543 33333332211 222357889999988777888
Q ss_pred HHhcCCCeEEEEc----CcccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHH----hcC
Q 001261 667 RKVLNKPVEIQVG----GRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLL----KHG 738 (1112)
Q Consensus 667 ~~~~~~p~~i~i~----~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~----~~g 738 (1112)
..-++.|-.+.+. +.-..+..+.+...+.....+...+..+|..+ ...++|+|+++...+..|+..|. ..+
T Consensus 379 ~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~-k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~ 457 (620)
T KOG0350|consen 379 DLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSN-KLNRTLCFVNSVSSANRLAHVLKVEFCSDN 457 (620)
T ss_pred hhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHh-hcceEEEEecchHHHHHHHHHHHHHhcccc
Confidence 8888888444433 33344555555555566556666777777653 45699999999999999999887 236
Q ss_pred CCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEe
Q 001261 739 YPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFI 818 (1112)
Q Consensus 739 ~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~ 818 (1112)
+.+-.+.|++....|...+..|..|.+.||||||+++|||||.+|+.|||||+|.+...|+||+|||+|+|+.|.||+++
T Consensus 458 ~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll 537 (620)
T KOG0350|consen 458 FKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLL 537 (620)
T ss_pred chhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEee
Confidence 67778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccCchHHHHHHHhh----ccCCCChhH-HHHHHHHHHHHhhh
Q 001261 819 SEEDAKYSPDLVKALEL----SEQVVPDDL-KALADSFMAKVNQG 858 (1112)
Q Consensus 819 ~~~d~~~~~~i~~~l~~----~~~~vp~~l-~~~~~~~~~~~~~~ 858 (1112)
+..+...+..+++.... ..+.+|... ..+.+.|.+.+..-
T Consensus 538 ~~~~~r~F~klL~~~~~~d~~~i~~~e~~~~~~~~~~Yt~ALEsL 582 (620)
T KOG0350|consen 538 DKHEKRLFSKLLKKTNLWDGVEIQPIEYIFIKDEDDRYTKALESL 582 (620)
T ss_pred ccccchHHHHHHHHhcccCCcceeecCchHHHHHHHHHHHHHHHH
Confidence 99999998888887654 234455433 33334555555433
|
|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-48 Score=478.78 Aligned_cols=348 Identities=19% Similarity=0.261 Sum_probs=276.6
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhH
Q 001261 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTREL 552 (1112)
Q Consensus 473 ~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreL 552 (1112)
.|++.|.+.|...||..||++|.++||.++.|+|+|+++|||||||++|++|+++.+... .++++|||+||++|
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~------~~~~aL~l~PtraL 93 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD------PRATALYLAPTKAL 93 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC------CCcEEEEEcChHHH
Confidence 488999999999999999999999999999999999999999999999999999998753 36789999999999
Q ss_pred HHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHh-cCCcccccCCceEEEeccchhhhc
Q 001261 553 VQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCT-SGGKITNLRRVTYLVMDEADRMFD 631 (1112)
Q Consensus 553 a~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~-~~~~~~~l~~i~~vViDEah~~~~ 631 (1112)
|.|++..+..+. ..++++..+.|+++. .+...+..+++|||+||++|...+.. +..+...|+++.+|||||||.|.+
T Consensus 94 a~q~~~~l~~l~-~~~i~v~~~~Gdt~~-~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g 171 (742)
T TIGR03817 94 AADQLRAVRELT-LRGVRPATYDGDTPT-EERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG 171 (742)
T ss_pred HHHHHHHHHHhc-cCCeEEEEEeCCCCH-HHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC
Confidence 999999999987 457888777777664 44456677899999999998753322 111123478999999999999876
Q ss_pred cCChhHHHHHHHhc-------CCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEeccc-------
Q 001261 632 MGFEPQITRIVQNI-------RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPE------- 697 (1112)
Q Consensus 632 ~gf~~~i~~il~~~-------~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~------- 697 (1112)
.|..++..++..+ +..+|+|+||||+++... ++..+++.|+.+ +.....+... .+.+.+.+.
T Consensus 172 -~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~~~~~~~~-~~~~~~~p~~~~~~~~ 247 (742)
T TIGR03817 172 -VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTEDGSPRGA-RTVALWEPPLTELTGE 247 (742)
T ss_pred -ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECCCCCCcCc-eEEEEecCCccccccc
Confidence 3777766555443 467899999999998765 677788888654 3322222221 222221111
Q ss_pred ----------chhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhc--------CCCeeeecCCCCHHHHHHHHHH
Q 001261 698 ----------SDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH--------GYPCLSLHGAKDQTDRESTISD 759 (1112)
Q Consensus 698 ----------~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~--------g~~~~~ihg~~~~~~R~~~~~~ 759 (1112)
..+...+..++. ...++||||+|+..|+.++..|... +..+..+||++++.+|..+++.
T Consensus 248 ~~~~~r~~~~~~~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~ 324 (742)
T TIGR03817 248 NGAPVRRSASAEAADLLADLVA---EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERA 324 (742)
T ss_pred cccccccchHHHHHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHH
Confidence 122233333333 2569999999999999999998763 5788999999999999999999
Q ss_pred hhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecC--CccCchHHHHHHHhh
Q 001261 760 FKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISE--EDAKYSPDLVKALEL 835 (1112)
Q Consensus 760 F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~--~d~~~~~~i~~~l~~ 835 (1112)
|++|.++|||||+++++||||+++++||||++|.+...|+||+|||||.|+.|.+++|++. .|..++..+.+.+..
T Consensus 325 f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~ 402 (742)
T TIGR03817 325 LRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDR 402 (742)
T ss_pred HHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999998863 455555555555543
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-47 Score=462.69 Aligned_cols=343 Identities=21% Similarity=0.311 Sum_probs=269.6
Q ss_pred cccc--CCCCHHHHHHHHH-CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEE
Q 001261 468 TWHQ--TGLTSKIMETIRK-LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGL 544 (1112)
Q Consensus 468 ~~~~--~~L~~~l~~~l~~-~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~L 544 (1112)
.|.. +.....+...++. +||..++|+|.++|+.++.|+|+|+++|||+|||++|++|+|.. +..+|
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~-----------~GiTL 504 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC-----------PGITL 504 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc-----------CCcEE
Confidence 4664 4455566666654 89999999999999999999999999999999999999999853 35799
Q ss_pred EEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHh------cCCeEEEeCchHHHH--HHHhcCCcccccC
Q 001261 545 IMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELK------RGTEIVVCTPGRMID--ILCTSGGKITNLR 616 (1112)
Q Consensus 545 Il~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~------~~~~IvV~Tp~~L~~--~l~~~~~~~~~l~ 616 (1112)
||+|+++|+.++...+.. .++.+..+.++....++...+. ..++|||+||++|.. .+......+....
T Consensus 505 VISPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~ 580 (1195)
T PLN03137 505 VISPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRG 580 (1195)
T ss_pred EEeCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhcc
Confidence 999999999854444333 5899999999998877654443 357999999999852 2221111112234
Q ss_pred CceEEEeccchhhhccC--ChhHHHHH--HHhcCCCCcEEEEeccccHHHHHHHHHhcCC--CeEEEEcCcccccCCccE
Q 001261 617 RVTYLVMDEADRMFDMG--FEPQITRI--VQNIRPDRQTVLFSATFPRQVEILARKVLNK--PVEIQVGGRSVVNKDITQ 690 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~g--f~~~i~~i--l~~~~~~~q~il~SAT~~~~~~~l~~~~~~~--p~~i~i~~~~~~~~~i~q 690 (1112)
.+.+|||||||+|++|| |.+.+..+ +...-+..++++||||++..+...+...+.. ++. .. .++...++..
T Consensus 581 ~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~v-fr--~Sf~RpNL~y 657 (1195)
T PLN03137 581 LLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVV-FR--QSFNRPNLWY 657 (1195)
T ss_pred ccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEE-ee--cccCccceEE
Confidence 58999999999999998 77777653 4555577899999999999887766655543 332 22 1233334432
Q ss_pred EEEecccch-hHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEE
Q 001261 691 LVEVRPESD-RFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLI 769 (1112)
Q Consensus 691 ~~~~~~~~~-k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLV 769 (1112)
. +..... .+..+..+|.........||||.++..|+.|+..|...|+.+..|||+|++.+|..+++.|..|.++|||
T Consensus 658 ~--Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLV 735 (1195)
T PLN03137 658 S--VVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIIC 735 (1195)
T ss_pred E--EeccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEE
Confidence 2 222222 2345556665444456889999999999999999999999999999999999999999999999999999
Q ss_pred ecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHH
Q 001261 770 ATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLV 830 (1112)
Q Consensus 770 aT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~ 830 (1112)
||+++++|||+|+|++||||++|.+++.|+|++|||||.|..|.|++||+..|...+..++
T Consensus 736 ATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI 796 (1195)
T PLN03137 736 ATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMI 796 (1195)
T ss_pred EechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999887765555554
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-46 Score=462.66 Aligned_cols=367 Identities=19% Similarity=0.220 Sum_probs=286.5
Q ss_pred CHHHHHHH-HHCCCCCChHHHHHHHHHHHcC------CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc
Q 001261 475 TSKIMETI-RKLNYEKPMPIQAQALPVIMSG------RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547 (1112)
Q Consensus 475 ~~~l~~~l-~~~~~~~pt~iQ~~ai~~il~g------~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~ 547 (1112)
+..+...+ ..++| .|||+|.+||+.|+.+ +|+|++|+||||||++|++|++..+.. +++++|||
T Consensus 437 ~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~--------g~qvlvLv 507 (926)
T TIGR00580 437 DLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD--------GKQVAVLV 507 (926)
T ss_pred CHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh--------CCeEEEEe
Confidence 34444444 45788 5999999999999975 799999999999999999999988754 57899999
Q ss_pred cchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHH---HHHHhc-CCeEEEeCchHHHHHHHhcCCcccccCCceEEEe
Q 001261 548 PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ---ISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVM 623 (1112)
Q Consensus 548 PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~---~~~l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vVi 623 (1112)
||++||.|++..|.+++..+++++..++|+.+..++ +..+.. .++||||||..| . ....|+++++|||
T Consensus 508 PT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll----~----~~v~f~~L~llVI 579 (926)
T TIGR00580 508 PTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL----Q----KDVKFKDLGLLII 579 (926)
T ss_pred CcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh----h----CCCCcccCCEEEe
Confidence 999999999999999998899999999888775443 344444 489999999532 2 1246789999999
Q ss_pred ccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHH
Q 001261 624 DEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLR 703 (1112)
Q Consensus 624 DEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ 703 (1112)
||+|++ .......+..++...|+|+||||+++....++...+.++..+..... ....+.+.+... ... .
T Consensus 580 DEahrf-----gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~--~R~~V~t~v~~~--~~~--~ 648 (926)
T TIGR00580 580 DEEQRF-----GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPE--DRLPVRTFVMEY--DPE--L 648 (926)
T ss_pred eccccc-----chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCC--CccceEEEEEec--CHH--H
Confidence 999993 44556677778888999999999887776666666677765543321 122343333222 111 1
Q ss_pred HHH-HHHhhhcCCeEEEEeCCHHHHHHHHHHHHhc--CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCC
Q 001261 704 LLE-LLGEWYEKGKILIFVHSQEKCDALFRDLLKH--GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDV 780 (1112)
Q Consensus 704 ll~-~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~--g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi 780 (1112)
+.. ++.....+++++|||+++..++.++..|... ++.|..+||+|++.+|..++..|.+|+++|||||+++++||||
T Consensus 649 i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDI 728 (926)
T TIGR00580 649 VREAIRRELLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDI 728 (926)
T ss_pred HHHHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhccccc
Confidence 111 2223335689999999999999999999885 7899999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCCCC-CHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhHHHHHHHHHHHHhhhh
Q 001261 781 KELELVINFDAPN-HYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAKVNQGL 859 (1112)
Q Consensus 781 ~~v~~VI~~d~p~-s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~~~~~~~~~~~~~~ 859 (1112)
|++++||++++|. ....|+||+||+||.|+.|.||+|+.+... +...-.+.|.. +.+
T Consensus 729 p~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~~-l~~~~~~RL~~-------------------~~~-- 786 (926)
T TIGR00580 729 PNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQKA-LTEDAQKRLEA-------------------IQE-- 786 (926)
T ss_pred ccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCccc-CCHHHHHHHHH-------------------HHH--
Confidence 9999999999986 577999999999999999999999875442 11122222211 111
Q ss_pred hcccCCCCCCCCcCCChhHHHHHHHHHHHHHHHcCCC
Q 001261 860 EQAHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFE 896 (1112)
Q Consensus 860 ~~~~~~~~~g~g~~~~~~~~~~r~~~~~~~~~~~g~~ 896 (1112)
..--|.||.+++.|+++||.|+.+|..|+|+-
T Consensus 787 -----~~~~g~gf~ia~~Dl~~Rg~G~~lG~~QsG~~ 818 (926)
T TIGR00580 787 -----FSELGAGFKIALHDLEIRGAGNLLGEEQSGHI 818 (926)
T ss_pred -----hhcchhhHHHHHHHHHhcCCcCCCCCcccCch
Confidence 11237899999999999999999999999974
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-46 Score=470.90 Aligned_cols=367 Identities=19% Similarity=0.203 Sum_probs=288.2
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHcC------CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccch
Q 001261 477 KIMETIRKLNYEKPMPIQAQALPVIMSG------RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTR 550 (1112)
Q Consensus 477 ~l~~~l~~~~~~~pt~iQ~~ai~~il~g------~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptr 550 (1112)
.....+..++| .||++|.+||+.++.+ +|+|++|+||||||.+|+++++..+. .++++||||||+
T Consensus 589 ~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~--------~g~qvlvLvPT~ 659 (1147)
T PRK10689 589 QYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE--------NHKQVAVLVPTT 659 (1147)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH--------cCCeEEEEeCcH
Confidence 34455677898 7999999999999987 89999999999999999998887653 378899999999
Q ss_pred hHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHh----cCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccc
Q 001261 551 ELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELK----RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEA 626 (1112)
Q Consensus 551 eLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~----~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEa 626 (1112)
+||.|++..|..++..+++.+.+++|+.+..++...+. ..++||||||+.|. . ...+.++++|||||+
T Consensus 660 eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~----~----~v~~~~L~lLVIDEa 731 (1147)
T PRK10689 660 LLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ----S----DVKWKDLGLLIVDEE 731 (1147)
T ss_pred HHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh----C----CCCHhhCCEEEEech
Confidence 99999999999988888899999999988877754443 35899999997431 1 245788999999999
Q ss_pred hhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHH
Q 001261 627 DRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLE 706 (1112)
Q Consensus 627 h~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~ 706 (1112)
|++ |+ ....++..++.+.|+|+||||+++.+..++...+.++..+...... ...+.+.+....... ....
T Consensus 732 hrf---G~--~~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~--r~~v~~~~~~~~~~~---~k~~ 801 (1147)
T PRK10689 732 HRF---GV--RHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR--RLAVKTFVREYDSLV---VREA 801 (1147)
T ss_pred hhc---ch--hHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC--CCCceEEEEecCcHH---HHHH
Confidence 996 33 3356677888899999999999888888888888888766543221 223443333222111 1223
Q ss_pred HHHhhhcCCeEEEEeCCHHHHHHHHHHHHhc--CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCcc
Q 001261 707 LLGEWYEKGKILIFVHSQEKCDALFRDLLKH--GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELE 784 (1112)
Q Consensus 707 ~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~--g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~ 784 (1112)
++..+...++++||||++..++.++..|... ++.+..+||+|++.+|..++..|++|+++|||||+++++|||||+++
T Consensus 802 il~el~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~ 881 (1147)
T PRK10689 802 ILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTAN 881 (1147)
T ss_pred HHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCC
Confidence 3334445689999999999999999999987 78999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCC-CHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhHHHHHHHHHHHHhhhhhccc
Q 001261 785 LVINFDAPN-HYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAKVNQGLEQAH 863 (1112)
Q Consensus 785 ~VI~~d~p~-s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~~~~~~~~~~~~~~~~~~ 863 (1112)
+||+++... +...|+|++||+||.|+.|.||+++.... .....-.+.|. .+..
T Consensus 882 ~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~~-~~~~~~~~rl~-------------------~~~~------ 935 (1147)
T PRK10689 882 TIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK-AMTTDAQKRLE-------------------AIAS------ 935 (1147)
T ss_pred EEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCCCc-ccCHHHHHHHH-------------------HHHH------
Confidence 999665543 56789999999999999999997765432 12111111111 1111
Q ss_pred CCCCCCCCcCCChhHHHHHHHHHHHHHHHcCCCC
Q 001261 864 GTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEE 897 (1112)
Q Consensus 864 ~~~~~g~g~~~~~~~~~~r~~~~~~~~~~~g~~~ 897 (1112)
..--|+||.+++.|+++||+|+++|..|+|+-.
T Consensus 936 -~~~lg~gf~~a~~dl~~rg~g~~~g~~q~g~~~ 968 (1147)
T PRK10689 936 -LEDLGAGFALATHDLEIRGAGELLGEEQSGQME 968 (1147)
T ss_pred -hcCCcchHHHHHHHHHhcCCccCCCCccCCCcc
Confidence 122378999999999999999999999999743
|
|
| >KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-47 Score=428.97 Aligned_cols=496 Identities=21% Similarity=0.268 Sum_probs=378.1
Q ss_pred CCCCcccCcCCCCCccCCcCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCcccccCCCCCCCCCchHHHHhccChh
Q 001261 247 AGRNWTLDREDSDDEEVPQTGKSETDMDADEEPKPSENQVGDAMLVDSDGGSAAPALQIGAAEDEDIDPLDAFMNSMVLP 326 (1112)
Q Consensus 247 ~~r~~~~~~e~~ed~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~d~~~~~~~~~~~~ 326 (1112)
.+|+||+.+|+.|+.+|||...+. + ...-+....++.||+.|++++|.+||++..-++.+ .|... .+.
T Consensus 168 edR~WYdnde~~d~~~npf~~~~~-----E----~~l~~~~~ki~~dn~~we~nrl~~sgvv~~~e~~~--~f~~~-e~~ 235 (1042)
T KOG0924|consen 168 EDREWYDNDEGGDEVHNPFSELSR-----E----AELLEKIQKINNDNALWETNRLLTSGVVQRMEVIS--DFLSD-EAR 235 (1042)
T ss_pred cchhhhhcCCccccccCchhcchh-----H----HHHHHHHHhhcchhhhhhhhcccchhhhhcccccC--ccchh-hHH
Confidence 369999999999999999975431 1 01122234489999999999999999999887774 45444 333
Q ss_pred hHHhhhccCCCCCCCCCccccccccccCCCCCCCCCCCcccccccCCCCCCCCCCCccCCCcCCCCCCCCcchHHHHHHH
Q 001261 327 EVEKLKNTVEPSFTDGNNVESKKMDRKGDRRSNGEQPKKSSNKSLGRIIPGEDSDSDYGDLENDEKPLEDEDDDEFMKRV 406 (1112)
Q Consensus 327 ~~~~~~~~~~~~~~d~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d~~~~~~~~~~~~~~~~~~~~~~~ 406 (1112)
+ +|||+++|+|+||+.+++|+..+ ++++.|.++|++..+..++.+ ++..
T Consensus 236 ~--llv~~i~~~fld~r~~~~k~~~~---------------------v~pv~d~~sd~a~~a~~gs~l--------v~~~ 284 (1042)
T KOG0924|consen 236 E--LLVHNIVPPFLDGREVFTKQAEP---------------------VIPVRDPTSDLAISARRGSKL--------VRER 284 (1042)
T ss_pred H--hhhhcccCCccccceeeeccccc---------------------ccccCCCchhhhhhhhccccH--------HHHH
Confidence 3 99999999999999999999887 999999999999999988876 7777
Q ss_pred HHhhhccCCcCCCcccccccccccccccchHHhhcCHHHHHHHHhhcCceeccCCCCCcccccccCCCCHHHHHHHHHCC
Q 001261 407 KKTKAEKLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLN 486 (1112)
Q Consensus 407 ~~~k~~~~~~~~~~~~~~~~~~k~f~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~p~pi~~~~~~~L~~~l~~~l~~~~ 486 (1112)
+.+.....+..+||++.++.+++.+..+.+.. +.....|+....+..+.+.. .....|.. ... ......
T Consensus 285 r~~~~~~k~~~~~~~~~~~~lgn~~glek~~~----ed~~~~~~~~~~~a~h~k~~-~a~~~fa~---~k~---i~eqrq 353 (1042)
T KOG0924|consen 285 REKEERKKAQKKHWKLAGTALGNVMGLEKKND----EDGKVAYRGSVKFASHMKKS-EAVSEFAS---KKS---IREQRQ 353 (1042)
T ss_pred HHhhhhhhhhhhhhhhcchhhccccccccCcc----cccccccccchhhhhccccc-cccccccc---cch---HHHHHh
Confidence 77777888889999999999999988765432 11111222222222222111 01111211 111 123455
Q ss_pred CCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc--cchhHHHHHHHHHHHHh
Q 001261 487 YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 487 ~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~--PtreLa~Q~~~~~~~~~ 564 (1112)
|...+.++.+.+..|..++-+||+|+||||||++....++.. |.+..++|.| |.|..|+ .+.+.++
T Consensus 354 ~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~ed---------GY~~~GmIGcTQPRRvAAi---SVAkrVa 421 (1042)
T KOG0924|consen 354 YLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYED---------GYADNGMIGCTQPRRVAAI---SVAKRVA 421 (1042)
T ss_pred hcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhc---------ccccCCeeeecCchHHHHH---HHHHHHH
Confidence 667788999999999999999999999999999866555532 4444456666 9999888 4566677
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccch-hhhccCChhHHHHHHH
Q 001261 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD-RMFDMGFEPQITRIVQ 643 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah-~~~~~gf~~~i~~il~ 643 (1112)
..++..+.+-+|++..++++.. ..+.|-++|.|.|+...... .+|..+++||||||| +.++.+....+.+.+.
T Consensus 422 ~EM~~~lG~~VGYsIRFEdvT~--~~T~IkymTDGiLLrEsL~d----~~L~kYSviImDEAHERslNtDilfGllk~~l 495 (1042)
T KOG0924|consen 422 EEMGVTLGDTVGYSIRFEDVTS--EDTKIKYMTDGILLRESLKD----RDLDKYSVIIMDEAHERSLNTDILFGLLKKVL 495 (1042)
T ss_pred HHhCCccccccceEEEeeecCC--CceeEEEeccchHHHHHhhh----hhhhheeEEEechhhhcccchHHHHHHHHHHH
Confidence 7888888888999888887655 55899999999998766543 478999999999999 8888888888888888
Q ss_pred hcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhh---hcCCeEEEE
Q 001261 644 NIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEW---YEKGKILIF 720 (1112)
Q Consensus 644 ~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~---~~~~~vLIF 720 (1112)
.-+.+..+|++|||| +...|+..|.+-|. +++.++.++.. ..+.-.+..+.+...+...... ...|.+|||
T Consensus 496 arRrdlKliVtSATm--~a~kf~nfFgn~p~-f~IpGRTyPV~---~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIf 569 (1042)
T KOG0924|consen 496 ARRRDLKLIVTSATM--DAQKFSNFFGNCPQ-FTIPGRTYPVE---IMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIF 569 (1042)
T ss_pred HhhccceEEEeeccc--cHHHHHHHhCCCce-eeecCCccceE---EEeccCchHHHHHHHHhhheEeeccCCCCCEEEe
Confidence 888999999999999 67788887776676 56666665533 2233334445555544433332 245799999
Q ss_pred eCCHHHHHHHHHHHHhc----------CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeC
Q 001261 721 VHSQEKCDALFRDLLKH----------GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFD 790 (1112)
Q Consensus 721 ~~s~~~~~~l~~~L~~~----------g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d 790 (1112)
++.++.++..+..+... ++.++.|++.|++..+.++++....|..+|||||++|+..|.||++.+||+.+
T Consensus 570 mtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~G 649 (1042)
T KOG0924|consen 570 MTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTG 649 (1042)
T ss_pred cCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecC
Confidence 99999887777766542 67899999999999999999999999999999999999999999999999844
Q ss_pred C------------------CCCHhHHHHHhcccCCCCCccEEEEEecCC
Q 001261 791 A------------------PNHYEDYVHRVGRTGRAGRKGCAITFISEE 821 (1112)
Q Consensus 791 ~------------------p~s~~~y~QriGR~gR~G~~g~~i~~~~~~ 821 (1112)
+ |.|.+...||.|||||+| +|+||.+|+..
T Consensus 650 y~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 650 YCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred ceeeeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 4 678888899999999998 99999999873
|
|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-45 Score=435.46 Aligned_cols=328 Identities=20% Similarity=0.341 Sum_probs=260.7
Q ss_pred HCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001261 484 KLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 484 ~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
.+||..|+|+|.++|+.++.|+|+|+++|||||||++|++|++.. +..+|||+||++|+.|++..+..
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~-----------~~~~lVi~P~~~L~~dq~~~l~~- 73 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS-----------DGITLVISPLISLMEDQVLQLKA- 73 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc-----------CCcEEEEecHHHHHHHHHHHHHH-
Confidence 589999999999999999999999999999999999999999842 45789999999999998887765
Q ss_pred hhhcCceEEEEeCCCChHHHH---HHHhc-CCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccC--ChhH
Q 001261 564 AKVMGVRCVPVYGGSGVAQQI---SELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG--FEPQ 637 (1112)
Q Consensus 564 ~~~~~i~~~~~~gg~~~~~~~---~~l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~g--f~~~ 637 (1112)
+++.+..+.++....++. ..+.. .++|||+||++|........ .+..+.++.+|||||||++++|| |.+.
T Consensus 74 ---~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~-~l~~~~~i~~iViDEaH~i~~~g~~fr~~ 149 (470)
T TIGR00614 74 ---SGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQ-TLEERKGITLIAVDEAHCISQWGHDFRPD 149 (470)
T ss_pred ---cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHH-HHHhcCCcCEEEEeCCcccCccccccHHH
Confidence 478888887777655432 22333 47999999998753220000 01146789999999999999987 6666
Q ss_pred HHHH--HHhcCCCCcEEEEeccccHHHHHHHHHhc--CCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhc
Q 001261 638 ITRI--VQNIRPDRQTVLFSATFPRQVEILARKVL--NKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE 713 (1112)
Q Consensus 638 i~~i--l~~~~~~~q~il~SAT~~~~~~~l~~~~~--~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~ 713 (1112)
+..+ +....++.++++||||+++.+...+...+ .+|..+.. +....++...+. ......+..++.+|.....
T Consensus 150 ~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~---s~~r~nl~~~v~-~~~~~~~~~l~~~l~~~~~ 225 (470)
T TIGR00614 150 YKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCT---SFDRPNLYYEVR-RKTPKILEDLLRFIRKEFK 225 (470)
T ss_pred HHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC---CCCCCCcEEEEE-eCCccHHHHHHHHHHHhcC
Confidence 6554 33344778999999999998766555554 34543322 222233322222 2222455567777765445
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCC
Q 001261 714 KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPN 793 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~ 793 (1112)
...+||||+++..|+.++..|...|+.+..+||+|++.+|..+++.|.+|.++|||||+++++|||+|+|++||||++|.
T Consensus 226 ~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~ 305 (470)
T TIGR00614 226 GKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPK 305 (470)
T ss_pred CCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCC
Confidence 55679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHH
Q 001261 794 HYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVK 831 (1112)
Q Consensus 794 s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~ 831 (1112)
+++.|+||+||+||.|..|.|++|+++.|...+..++.
T Consensus 306 s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 306 SMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLM 343 (470)
T ss_pred CHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHh
Confidence 99999999999999999999999999988776666554
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=437.91 Aligned_cols=360 Identities=18% Similarity=0.263 Sum_probs=273.9
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHHcC------CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhH
Q 001261 479 METIRKLNYEKPMPIQAQALPVIMSG------RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTREL 552 (1112)
Q Consensus 479 ~~~l~~~~~~~pt~iQ~~ai~~il~g------~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreL 552 (1112)
...+..++| .||++|.++|+.|..+ +++|++|+||||||++|++|++..+. +|+++|||+||++|
T Consensus 252 ~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~--------~g~q~lilaPT~~L 322 (681)
T PRK10917 252 KKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE--------AGYQAALMAPTEIL 322 (681)
T ss_pred HHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH--------cCCeEEEEeccHHH
Confidence 344456888 6999999999999987 47999999999999999999998764 37889999999999
Q ss_pred HHHHHHHHHHHhhhcCceEEEEeCCCChHH---HHHHHhcC-CeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchh
Q 001261 553 VQQIHSDIRKFAKVMGVRCVPVYGGSGVAQ---QISELKRG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADR 628 (1112)
Q Consensus 553 a~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~---~~~~l~~~-~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~ 628 (1112)
|.|++..+++++..+++++.+++|+.+..+ ++..+..| ++||||||+.|.+. ..+.++++|||||+|+
T Consensus 323 A~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~--------v~~~~l~lvVIDE~Hr 394 (681)
T PRK10917 323 AEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDD--------VEFHNLGLVIIDEQHR 394 (681)
T ss_pred HHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhccc--------chhcccceEEEechhh
Confidence 999999999999999999999999998543 34555554 89999999877432 3578899999999999
Q ss_pred hhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHH
Q 001261 629 MFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELL 708 (1112)
Q Consensus 629 ~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l 708 (1112)
+. ......+.......++|+||||+.+....+.. +.+.....+...+.....+.+.+.. ......++..+
T Consensus 395 fg-----~~qr~~l~~~~~~~~iL~~SATp~prtl~~~~--~g~~~~s~i~~~p~~r~~i~~~~~~---~~~~~~~~~~i 464 (681)
T PRK10917 395 FG-----VEQRLALREKGENPHVLVMTATPIPRTLAMTA--YGDLDVSVIDELPPGRKPITTVVIP---DSRRDEVYERI 464 (681)
T ss_pred hh-----HHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHH--cCCCceEEEecCCCCCCCcEEEEeC---cccHHHHHHHH
Confidence 53 23334444455568999999998766544433 3332222222222222334433322 22233444444
Q ss_pred Hhhh-cCCeEEEEeCCH--------HHHHHHHHHHHhc--CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCccccc
Q 001261 709 GEWY-EKGKILIFVHSQ--------EKCDALFRDLLKH--GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARG 777 (1112)
Q Consensus 709 ~~~~-~~~~vLIF~~s~--------~~~~~l~~~L~~~--g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~G 777 (1112)
.... ...+++|||+.+ ..+..++..|... ++.|..+||+|++.+|..+++.|++|.++|||||+++++|
T Consensus 465 ~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~G 544 (681)
T PRK10917 465 REEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVG 544 (681)
T ss_pred HHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeC
Confidence 4433 346999999964 4556777777765 5789999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEeCCCCC-HhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhHHHHHHHHHHHHh
Q 001261 778 LDVKELELVINFDAPNH-YEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAKVN 856 (1112)
Q Consensus 778 lDi~~v~~VI~~d~p~s-~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~~~~~~~~~~~ 856 (1112)
||||++++||+|++|.. ...|.|++||+||.|..|.||+|+...........++.+..
T Consensus 545 iDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~~~~~--------------------- 603 (681)
T PRK10917 545 VDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLKIMRE--------------------- 603 (681)
T ss_pred cccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCCCChhHHHHHHHHHH---------------------
Confidence 99999999999999984 67788899999999999999999863322111111222111
Q ss_pred hhhhcccCCCCCCCCcCCChhHHHHHHHHHHHHHHHcCCCC
Q 001261 857 QGLEQAHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEE 897 (1112)
Q Consensus 857 ~~~~~~~~~~~~g~g~~~~~~~~~~r~~~~~~~~~~~g~~~ 897 (1112)
...||.+++.|+++|+.|+.+|..|+|+..
T Consensus 604 -----------~~dgf~iae~dl~~rg~g~~~g~~q~g~~~ 633 (681)
T PRK10917 604 -----------TNDGFVIAEKDLELRGPGELLGTRQSGLPE 633 (681)
T ss_pred -----------hcchHHHHHHhHhhCCCccccCceecCCCC
Confidence 136899999999999999999999999765
|
|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-43 Score=430.13 Aligned_cols=331 Identities=21% Similarity=0.336 Sum_probs=259.6
Q ss_pred HHHHHHHHH-CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHH
Q 001261 476 SKIMETIRK-LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQ 554 (1112)
Q Consensus 476 ~~l~~~l~~-~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~ 554 (1112)
......|+. +||..|+|+|.++|+.++.|+|+|+++|||+|||++|++|++.. +..+|||+|+++|+.
T Consensus 11 ~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~-----------~g~tlVisPl~sL~~ 79 (607)
T PRK11057 11 SLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL-----------DGLTLVVSPLISLMK 79 (607)
T ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc-----------CCCEEEEecHHHHHH
Confidence 333445543 89999999999999999999999999999999999999999843 346899999999999
Q ss_pred HHHHHHHHHhhhcCceEEEEeCCCChHHHHHH---Hhc-CCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhh
Q 001261 555 QIHSDIRKFAKVMGVRCVPVYGGSGVAQQISE---LKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF 630 (1112)
Q Consensus 555 Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~---l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~ 630 (1112)
|+...+.. +|+.+.++.++......... +.. ..+|+|+||++|....... .....++++|||||||+++
T Consensus 80 dqv~~l~~----~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~---~l~~~~l~~iVIDEaH~i~ 152 (607)
T PRK11057 80 DQVDQLLA----NGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLE---HLAHWNPALLAVDEAHCIS 152 (607)
T ss_pred HHHHHHHH----cCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHH---HHhhCCCCEEEEeCccccc
Confidence 98887765 47888888887776654332 232 4689999999986321111 1234578999999999999
Q ss_pred ccC--ChhHHHHH--HHhcCCCCcEEEEeccccHHHHHHHHHhc--CCCeEEEEcCcccccCCccEEEEecccchhHHHH
Q 001261 631 DMG--FEPQITRI--VQNIRPDRQTVLFSATFPRQVEILARKVL--NKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRL 704 (1112)
Q Consensus 631 ~~g--f~~~i~~i--l~~~~~~~q~il~SAT~~~~~~~l~~~~~--~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~l 704 (1112)
+|| |.+.+..+ +....++.++|+||||++..+...+...+ .+|... +.. +...++. +.+.........+
T Consensus 153 ~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~-~~~--~~r~nl~--~~v~~~~~~~~~l 227 (607)
T PRK11057 153 QWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISS--FDRPNIR--YTLVEKFKPLDQL 227 (607)
T ss_pred cccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEE-ECC--CCCCcce--eeeeeccchHHHH
Confidence 987 66666544 23334678999999999988765444443 455432 222 2223332 2222333444556
Q ss_pred HHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCcc
Q 001261 705 LELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELE 784 (1112)
Q Consensus 705 l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~ 784 (1112)
+.++.. ....++||||+++..|+.++..|...|+.+..+||+|++.+|..+++.|..|.++|||||+++++|||+|+|+
T Consensus 228 ~~~l~~-~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~ 306 (607)
T PRK11057 228 MRYVQE-QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVR 306 (607)
T ss_pred HHHHHh-cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcC
Confidence 666544 3456899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHH
Q 001261 785 LVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLV 830 (1112)
Q Consensus 785 ~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~ 830 (1112)
+||||++|.+.+.|+||+||+||.|..|.|++||++.|...+..++
T Consensus 307 ~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 307 FVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred EEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988765544443
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-43 Score=430.60 Aligned_cols=364 Identities=20% Similarity=0.275 Sum_probs=270.9
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHcC------CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccc
Q 001261 476 SKIMETIRKLNYEKPMPIQAQALPVIMSG------RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT 549 (1112)
Q Consensus 476 ~~l~~~l~~~~~~~pt~iQ~~ai~~il~g------~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Pt 549 (1112)
..+...+..++| .||++|..||+.|+.+ .++|++|+||||||++|++|++..+.. |+++|||+||
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~--------g~qvlilaPT 293 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA--------GYQVALMAPT 293 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc--------CCcEEEECCH
Confidence 344566778999 7999999999999976 368999999999999999999987653 6789999999
Q ss_pred hhHHHHHHHHHHHHhhhcCceEEEEeCCCChHH---HHHHHhc-CCeEEEeCchHHHHHHHhcCCcccccCCceEEEecc
Q 001261 550 RELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQ---QISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDE 625 (1112)
Q Consensus 550 reLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~---~~~~l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDE 625 (1112)
++||.|++..+.+++..+++++.+++|+..... ++..+.. .++|||+||+.|.+. ..+.++++|||||
T Consensus 294 ~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~--------~~~~~l~lvVIDE 365 (630)
T TIGR00643 294 EILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEK--------VEFKRLALVIIDE 365 (630)
T ss_pred HHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhcc--------ccccccceEEEec
Confidence 999999999999999999999999999987665 3444444 479999999977432 3578899999999
Q ss_pred chhhhccCChhHHHHHHHhcC--CCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHH
Q 001261 626 ADRMFDMGFEPQITRIVQNIR--PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLR 703 (1112)
Q Consensus 626 ah~~~~~gf~~~i~~il~~~~--~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ 703 (1112)
+|++... +...++.... ...++|+||||+.+....+. .+.+.....+...+.....+...+. .... ...
T Consensus 366 aH~fg~~----qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~--~~~~l~~~~i~~~p~~r~~i~~~~~--~~~~-~~~ 436 (630)
T TIGR00643 366 QHRFGVE----QRKKLREKGQGGFTPHVLVMSATPIPRTLALT--VYGDLDTSIIDELPPGRKPITTVLI--KHDE-KDI 436 (630)
T ss_pred hhhccHH----HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHH--hcCCcceeeeccCCCCCCceEEEEe--Ccch-HHH
Confidence 9985321 2222222222 26789999999866543332 2222211122211111223333322 2222 244
Q ss_pred HHHHHHhhh-cCCeEEEEeCCH--------HHHHHHHHHHHhc--CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC
Q 001261 704 LLELLGEWY-EKGKILIFVHSQ--------EKCDALFRDLLKH--GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS 772 (1112)
Q Consensus 704 ll~~l~~~~-~~~~vLIF~~s~--------~~~~~l~~~L~~~--g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~ 772 (1112)
++..+.... ...+++|||+.. ..+..++..|... ++.|..+||+|++.+|..+++.|++|..+|||||+
T Consensus 437 ~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~ 516 (630)
T TIGR00643 437 VYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATT 516 (630)
T ss_pred HHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc
Confidence 555555433 456899999876 4566777777653 78899999999999999999999999999999999
Q ss_pred cccccCCCCCccEEEEeCCCC-CHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhHHHHHHHH
Q 001261 773 VAARGLDVKELELVINFDAPN-HYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSF 851 (1112)
Q Consensus 773 v~~~GlDi~~v~~VI~~d~p~-s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~~~~~~ 851 (1112)
++++|||+|++++||+|++|. ....|.|++||+||.|..|.||+++...........++.+.
T Consensus 517 vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~~~~~~~~~~rl~~~~----------------- 579 (630)
T TIGR00643 517 VIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYKNPKSESAKKRLRVMA----------------- 579 (630)
T ss_pred eeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEECCCCCHHHHHHHHHHH-----------------
Confidence 999999999999999999997 57788889999999999999999984322111111111110
Q ss_pred HHHHhhhhhcccCCCCCCCCcCCChhHHHHHHHHHHHHHHHcCCCC
Q 001261 852 MAKVNQGLEQAHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEE 897 (1112)
Q Consensus 852 ~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~r~~~~~~~~~~~g~~~ 897 (1112)
. ...||.+++.|+++|+.|+.+|.+|+|+..
T Consensus 580 -----~----------~~dgf~iae~dl~~Rg~g~~~g~~QsG~~~ 610 (630)
T TIGR00643 580 -----D----------TLDGFVIAEEDLELRGPGDLLGTKQSGYPE 610 (630)
T ss_pred -----h----------hcccHHHHHHHHhcCCCcccCCCcccCCCc
Confidence 0 136899999999999999999999999754
|
|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-43 Score=421.47 Aligned_cols=317 Identities=20% Similarity=0.272 Sum_probs=251.0
Q ss_pred CCCCCChHHHHHHHHHHHcCC-CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEE-EccchhHHHHHHHHHHH
Q 001261 485 LNYEKPMPIQAQALPVIMSGR-DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI-MAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~-dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LI-l~PtreLa~Q~~~~~~~ 562 (1112)
.||. |||||.++||.++.|+ ++++.++||||||.+|.++++.. .. ....++.|| ++|||+||.|+++.+.+
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~-----~~~~~~rLv~~vPtReLa~Qi~~~~~~ 84 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EI-----GAKVPRRLVYVVNRRTVVDQVTEEAEK 84 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cc-----cccccceEEEeCchHHHHHHHHHHHHH
Confidence 6887 9999999999999998 57778999999999776555522 11 123566676 66999999999999999
Q ss_pred Hhhhc-----------------------CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCC---------
Q 001261 563 FAKVM-----------------------GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGG--------- 610 (1112)
Q Consensus 563 ~~~~~-----------------------~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~--------- 610 (1112)
+++.+ ++++.+++||.+...|+..+..+++|||+|+. ++.+...
T Consensus 85 ~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D----~i~sr~L~~gYg~~~~ 160 (844)
T TIGR02621 85 IGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVD----MIGSRLLFSGYGCGFK 160 (844)
T ss_pred HHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHH----HHcCCccccccccccc
Confidence 99866 48899999999999999999999999999954 4433211
Q ss_pred ----cccccCCceEEEeccchhhhccCChhHHHHHHHhc--CCC---CcEEEEeccccHHHHHHHHHhcCCCeEEEEcCc
Q 001261 611 ----KITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI--RPD---RQTVLFSATFPRQVEILARKVLNKPVEIQVGGR 681 (1112)
Q Consensus 611 ----~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~--~~~---~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~ 681 (1112)
....|.++++||||||| ++++|...+..|+..+ ++. +|+++||||+|..+..++..++.++..+.+...
T Consensus 161 ~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~ 238 (844)
T TIGR02621 161 SRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKK 238 (844)
T ss_pred cccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccc
Confidence 01136889999999999 7899999999999975 332 699999999999888888888888876666554
Q ss_pred ccccCCccEEEEecccchhHHHHHHHHHhh--hcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHH-----
Q 001261 682 SVVNKDITQLVEVRPESDRFLRLLELLGEW--YEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRE----- 754 (1112)
Q Consensus 682 ~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~--~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~----- 754 (1112)
......+.+.+. .....++..++..+... ...+++||||||+..|+.++..|...++ ..|||+|++.+|.
T Consensus 239 ~l~a~ki~q~v~-v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~ 315 (844)
T TIGR02621 239 RLAAKKIVKLVP-PSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKK 315 (844)
T ss_pred cccccceEEEEe-cChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHH
Confidence 444445555433 23333444444433222 2357899999999999999999998876 8999999999999
Q ss_pred HHHHHhhc----CC-------ccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCc-cEEEEEecC
Q 001261 755 STISDFKS----NV-------CNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRK-GCAITFISE 820 (1112)
Q Consensus 755 ~~~~~F~~----g~-------~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~-g~~i~~~~~ 820 (1112)
.+++.|++ |. ..|||||+++++||||+. ++||++.+| .+.|+||+||+||.|.. +.++++++.
T Consensus 316 ~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 316 EIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred HHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 88999987 54 689999999999999987 889988877 68999999999999985 444666643
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=437.97 Aligned_cols=343 Identities=21% Similarity=0.304 Sum_probs=254.5
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCC-CCCCCcEEEEccchhH
Q 001261 474 LTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVA-AGDGPVGLIMAPTREL 552 (1112)
Q Consensus 474 L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~-~~~~~~~LIl~PtreL 552 (1112)
|++.+...+.. +|..|||+|.++||.++.|+++|++||||||||++|++|++.++....... ...++++|||+||++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 56666666555 789999999999999999999999999999999999999999887532111 1346789999999999
Q ss_pred HHHHHHHHHH-------Hh----hhc-CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceE
Q 001261 553 VQQIHSDIRK-------FA----KVM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTY 620 (1112)
Q Consensus 553 a~Q~~~~~~~-------~~----~~~-~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~ 620 (1112)
+.|++..+.. ++ ..+ ++.+.+.+|+++.......+...++||||||++|..++... .....|.++.+
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~-~~~~~l~~l~~ 175 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSP-KFREKLRTVKW 175 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcCh-hHHHHHhcCCE
Confidence 9999886653 22 122 67888999999988887778888999999999998776432 11235789999
Q ss_pred EEeccchhhhccCChhHHHHHH----HhcCCCCcEEEEeccccHHHHHHHHHhcC-------CCeEEEEcCcccccCCcc
Q 001261 621 LVMDEADRMFDMGFEPQITRIV----QNIRPDRQTVLFSATFPRQVEILARKVLN-------KPVEIQVGGRSVVNKDIT 689 (1112)
Q Consensus 621 vViDEah~~~~~gf~~~i~~il----~~~~~~~q~il~SAT~~~~~~~l~~~~~~-------~p~~i~i~~~~~~~~~i~ 689 (1112)
|||||+|.|++..+..++..++ ....+..|+|+||||+++. ..++..+.. .++.+. .........+.
T Consensus 176 VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~~va~~L~~~~~~~~~r~~~iv-~~~~~k~~~i~ 253 (876)
T PRK13767 176 VIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-EEVAKFLVGYEDDGEPRDCEIV-DARFVKPFDIK 253 (876)
T ss_pred EEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-HHHHHHhcCccccCCCCceEEE-ccCCCccceEE
Confidence 9999999999876665554443 3334678999999999762 334333322 122221 11110000010
Q ss_pred EEE-----EecccchhHHHHHHHHHhhh-cCCeEEEEeCCHHHHHHHHHHHHhc------CCCeeeecCCCCHHHHHHHH
Q 001261 690 QLV-----EVRPESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKH------GYPCLSLHGAKDQTDRESTI 757 (1112)
Q Consensus 690 q~~-----~~~~~~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~------g~~~~~ihg~~~~~~R~~~~ 757 (1112)
... ...........+...|.... ..+++||||||+..|+.++..|... +..+.++||+|++.+|..++
T Consensus 254 v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve 333 (876)
T PRK13767 254 VISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVE 333 (876)
T ss_pred EeccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHH
Confidence 000 00111112233334443332 3568999999999999999999873 46899999999999999999
Q ss_pred HHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCC-CCccEEEEEecC
Q 001261 758 SDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRA-GRKGCAITFISE 820 (1112)
Q Consensus 758 ~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~-G~~g~~i~~~~~ 820 (1112)
+.|++|.++|||||+++++|||||++++||+|++|.+...|+||+||+||. |..+.+++++..
T Consensus 334 ~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~ 397 (876)
T PRK13767 334 EKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVD 397 (876)
T ss_pred HHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcC
Confidence 999999999999999999999999999999999999999999999999986 434445555443
|
|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=434.80 Aligned_cols=371 Identities=24% Similarity=0.356 Sum_probs=274.2
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEE
Q 001261 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPV-IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (1112)
Q Consensus 468 ~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~-il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl 546 (1112)
.|.+++|++.+++.|...||..|+|+|.+|++. +++|+++|+++|||||||++|.+|++.++.. +.++|||
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~--------~~kal~i 73 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR--------GGKALYI 73 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc--------CCcEEEE
Confidence 578899999999999999999999999999998 7799999999999999999999999998752 5689999
Q ss_pred ccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccc
Q 001261 547 APTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEA 626 (1112)
Q Consensus 547 ~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEa 626 (1112)
+||++||.|++..|+.+.. +|+++..++|+...... ....++|+||||+++..++.... ..+.++++|||||+
T Consensus 74 ~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~---~~l~~v~lvViDE~ 146 (737)
T PRK02362 74 VPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGA---PWLDDITCVVVDEV 146 (737)
T ss_pred eChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcCh---hhhhhcCEEEEECc
Confidence 9999999999999998653 58999999998754432 23458999999999988876432 35788999999999
Q ss_pred hhhhccCChhHHHHHHHhc---CCCCcEEEEeccccHHHHHHHHHhcCC-------CeEEEEc--CcccccCCccEE-EE
Q 001261 627 DRMFDMGFEPQITRIVQNI---RPDRQTVLFSATFPRQVEILARKVLNK-------PVEIQVG--GRSVVNKDITQL-VE 693 (1112)
Q Consensus 627 h~~~~~gf~~~i~~il~~~---~~~~q~il~SAT~~~~~~~l~~~~~~~-------p~~i~i~--~~~~~~~~i~q~-~~ 693 (1112)
|.|.+.++++.+..++..+ .+..|+|+||||+++. ..++.++... |+.+..+ ........-.+. +.
T Consensus 147 H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~ 225 (737)
T PRK02362 147 HLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVE 225 (737)
T ss_pred cccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHHHHhCCCcccCCCCCCCCeeeEecCCeeccccccccCC
Confidence 9999988888888776655 5788999999999763 3343332211 2111110 000000000000 00
Q ss_pred ecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhc------------------------------------
Q 001261 694 VRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH------------------------------------ 737 (1112)
Q Consensus 694 ~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~------------------------------------ 737 (1112)
..........++..+ ..++++||||+++..|+.++..|...
T Consensus 226 ~~~~~~~~~~~~~~~---~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l 302 (737)
T PRK02362 226 VPSKDDTLNLVLDTL---EEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCV 302 (737)
T ss_pred CccchHHHHHHHHHH---HcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHH
Confidence 001111222222222 24679999999999999998888643
Q ss_pred CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEE----eC-----CCCCHhHHHHHhcccCCC
Q 001261 738 GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN----FD-----APNHYEDYVHRVGRTGRA 808 (1112)
Q Consensus 738 g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~----~d-----~p~s~~~y~QriGR~gR~ 808 (1112)
...+.++||+|++.+|..++..|++|.++|||||+++++|||+|.+.+||+ |+ .|.+..+|+||+|||||.
T Consensus 303 ~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~ 382 (737)
T PRK02362 303 AKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRP 382 (737)
T ss_pred HhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCC
Confidence 136889999999999999999999999999999999999999999999997 76 588999999999999999
Q ss_pred CCc--cEEEEEecCCccCchHHHHHHHhhccCCCChhH---HHHHHHHHHHHhhh
Q 001261 809 GRK--GCAITFISEEDAKYSPDLVKALELSEQVVPDDL---KALADSFMAKVNQG 858 (1112)
Q Consensus 809 G~~--g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp~~l---~~~~~~~~~~~~~~ 858 (1112)
|.. |.||+|+...+. ....+.+++.....++...| ..+...+++.+..+
T Consensus 383 g~d~~G~~ii~~~~~~~-~~~~~~~~l~~~~~~i~S~l~~~~~l~~~lla~I~~~ 436 (737)
T PRK02362 383 GLDPYGEAVLLAKSYDE-LDELFERYIWADPEDVRSKLATEPALRTHVLSTIASG 436 (737)
T ss_pred CCCCCceEEEEecCchh-HHHHHHHHHhCCCCceeecCCChhhHHHHHHHHHHhC
Confidence 865 899988865432 11122333332222332323 23555666665544
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-42 Score=421.83 Aligned_cols=326 Identities=22% Similarity=0.356 Sum_probs=261.4
Q ss_pred HHH-HCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHH
Q 001261 481 TIR-KLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSD 559 (1112)
Q Consensus 481 ~l~-~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~ 559 (1112)
.|+ .+||..++|+|.++|+.++.|+|+|+++|||+|||++|++|++.. +..+|||+|+++|+.|++..
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~-----------~g~~lVisPl~sL~~dq~~~ 72 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL-----------KGLTVVISPLISLMKDQVDQ 72 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc-----------CCcEEEEcCCHHHHHHHHHH
Confidence 344 499999999999999999999999999999999999999999842 34689999999999998887
Q ss_pred HHHHhhhcCceEEEEeCCCChHHHHHH---H-hcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccC--
Q 001261 560 IRKFAKVMGVRCVPVYGGSGVAQQISE---L-KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG-- 633 (1112)
Q Consensus 560 ~~~~~~~~~i~~~~~~gg~~~~~~~~~---l-~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~g-- 633 (1112)
+.. +|+.+..+.++.+..+.... + ....+|+|+||++|....... .....++++|||||||++.+||
T Consensus 73 l~~----~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~---~l~~~~l~~iViDEaH~i~~~g~~ 145 (591)
T TIGR01389 73 LRA----AGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLN---MLQRIPIALVAVDEAHCVSQWGHD 145 (591)
T ss_pred HHH----cCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHH---HHhcCCCCEEEEeCCcccccccCc
Confidence 766 47888888888776654322 2 245799999999986432221 1345679999999999999887
Q ss_pred ChhHHHHHHHhc--CCCCcEEEEeccccHHHHHHHHHhcC--CCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHH
Q 001261 634 FEPQITRIVQNI--RPDRQTVLFSATFPRQVEILARKVLN--KPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLG 709 (1112)
Q Consensus 634 f~~~i~~il~~~--~~~~q~il~SAT~~~~~~~l~~~~~~--~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~ 709 (1112)
|.+.+..+.... -+..++|+||||+++.+...+...+. ++..+ +. ++...++. +.+.....+...++.+|.
T Consensus 146 frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~-~~--~~~r~nl~--~~v~~~~~~~~~l~~~l~ 220 (591)
T TIGR01389 146 FRPEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANEF-IT--SFDRPNLR--FSVVKKNNKQKFLLDYLK 220 (591)
T ss_pred cHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeE-ec--CCCCCCcE--EEEEeCCCHHHHHHHHHH
Confidence 777666553322 24556999999999988766666654 33322 21 22223332 233334556667777776
Q ss_pred hhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEe
Q 001261 710 EWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINF 789 (1112)
Q Consensus 710 ~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~ 789 (1112)
.. ...++||||+++..|+.++..|...|+++..+||+|+..+|..+++.|.+|.++|||||+++++|||+|+|++||+|
T Consensus 221 ~~-~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~ 299 (591)
T TIGR01389 221 KH-RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHY 299 (591)
T ss_pred hc-CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEc
Confidence 53 35789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHH
Q 001261 790 DAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLV 830 (1112)
Q Consensus 790 d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~ 830 (1112)
++|.+++.|+|++||+||.|..|.|++||++.|...+..++
T Consensus 300 ~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i 340 (591)
T TIGR01389 300 DMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRI 340 (591)
T ss_pred CCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHH
Confidence 99999999999999999999999999999988876555444
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=357.26 Aligned_cols=334 Identities=31% Similarity=0.538 Sum_probs=286.8
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEE
Q 001261 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545 (1112)
Q Consensus 466 i~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LI 545 (1112)
-+.|.++-|.+.|+.++-..||..|+.+|.++||..+-|.|+|++|..|.|||.+|.+..|+.|.-- .....+|+
T Consensus 41 ssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv-----~g~vsvlv 115 (387)
T KOG0329|consen 41 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPV-----DGQVSVLV 115 (387)
T ss_pred ccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCC-----CCeEEEEE
Confidence 3568889999999999999999999999999999999999999999999999999999999876431 12456899
Q ss_pred EccchhHHHHHHHHHHHHhhhc-CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEec
Q 001261 546 MAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (1112)
Q Consensus 546 l~PtreLa~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViD 624 (1112)
+|.||+||.||.++..+|.+++ ++++...+||.++......|++.++|||+|||+++.+.... .++|+++..+|||
T Consensus 116 mchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k---~l~lk~vkhFvlD 192 (387)
T KOG0329|consen 116 MCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNR---SLNLKNVKHFVLD 192 (387)
T ss_pred EeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhc---cCchhhcceeehh
Confidence 9999999999999999999988 68899999999999888888888899999999999888764 4789999999999
Q ss_pred cchhhhc-cCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcc-cccCCccEEEEecccchhHH
Q 001261 625 EADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRS-VVNKDITQLVEVRPESDRFL 702 (1112)
Q Consensus 625 Eah~~~~-~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~-~~~~~i~q~~~~~~~~~k~~ 702 (1112)
|+|.|+. .+.+..+..|+...+...|+.+||||++..+.-.+++|+.+|..|.+.... .....+.|++....+..|..
T Consensus 193 Ecdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNr 272 (387)
T KOG0329|consen 193 ECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNR 272 (387)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhh
Confidence 9998875 346788999999999999999999999999999999999999999887653 34455677777677777777
Q ss_pred HHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCC
Q 001261 703 RLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKE 782 (1112)
Q Consensus 703 ~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~ 782 (1112)
.|..+|.. ..-++++||+.+... | . | ..+ ||||++++||+||..
T Consensus 273 kl~dLLd~-LeFNQVvIFvKsv~R-------l-----------------------~-f---~kr-~vat~lfgrgmdier 316 (387)
T KOG0329|consen 273 KLNDLLDV-LEFNQVVIFVKSVQR-------L-----------------------S-F---QKR-LVATDLFGRGMDIER 316 (387)
T ss_pred hhhhhhhh-hhhcceeEeeehhhh-------h-----------------------h-h---hhh-hHHhhhhccccCccc
Confidence 77777754 345799999988765 1 0 3 123 899999999999999
Q ss_pred ccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecC-CccCchHHHHHHHhhccCCCChh
Q 001261 783 LELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISE-EDAKYSPDLVKALELSEQVVPDD 843 (1112)
Q Consensus 783 v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~-~d~~~~~~i~~~l~~~~~~vp~~ 843 (1112)
++.|||||+|.+..+|+||+||+||.|.+|.+|+|++. ++...+..+..........+|+.
T Consensus 317 vNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpde 378 (387)
T KOG0329|consen 317 VNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELPDE 378 (387)
T ss_pred ceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcCcc
Confidence 99999999999999999999999999999999999975 56667777777666666666654
|
|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-41 Score=421.34 Aligned_cols=338 Identities=20% Similarity=0.272 Sum_probs=262.5
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEE
Q 001261 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPV-IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (1112)
Q Consensus 468 ~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~-il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl 546 (1112)
+|.+++|++.+.+.|...||..|+|+|.++|+. ++.|+++|+++|||||||++|.+|++.++.. .+.++|||
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~-------~~~~~l~l 74 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR-------EGGKAVYL 74 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh-------cCCeEEEE
Confidence 577899999999999999999999999999986 7899999999999999999999999998764 25689999
Q ss_pred ccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccc
Q 001261 547 APTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEA 626 (1112)
Q Consensus 547 ~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEa 626 (1112)
+||++||.|++..+..|. .+++++..++|+...... +...++|||+||+++..++.... ..++++++|||||+
T Consensus 75 ~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~---~~l~~l~lvViDE~ 147 (720)
T PRK00254 75 VPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGS---SWIKDVKLVVADEI 147 (720)
T ss_pred eChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCc---hhhhcCCEEEEcCc
Confidence 999999999999998864 478999999998765432 23468999999999988775432 35788999999999
Q ss_pred hhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccC--CccEEEEecccc--hhH-
Q 001261 627 DRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNK--DITQLVEVRPES--DRF- 701 (1112)
Q Consensus 627 h~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~--~i~q~~~~~~~~--~k~- 701 (1112)
|.+.+.++...+..++..+....|+|+||||+++ ...++. +++.+.. .....++... .+.+.+...... .++
T Consensus 148 H~l~~~~rg~~le~il~~l~~~~qiI~lSATl~n-~~~la~-wl~~~~~-~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~ 224 (720)
T PRK00254 148 HLIGSYDRGATLEMILTHMLGRAQILGLSATVGN-AEELAE-WLNAELV-VSDWRPVKLRKGVFYQGFLFWEDGKIERFP 224 (720)
T ss_pred CccCCccchHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHH-HhCCccc-cCCCCCCcceeeEecCCeeeccCcchhcch
Confidence 9999999999999999999999999999999986 345554 4433221 1111111100 011111111111 111
Q ss_pred HHHHHHHHhhh-cCCeEEEEeCCHHHHHHHHHHHHhc---------------------------------CCCeeeecCC
Q 001261 702 LRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKH---------------------------------GYPCLSLHGA 747 (1112)
Q Consensus 702 ~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~---------------------------------g~~~~~ihg~ 747 (1112)
..+...+.... .++++||||+++..|+.++..|... ...|.++||+
T Consensus 225 ~~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHag 304 (720)
T PRK00254 225 NSWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAG 304 (720)
T ss_pred HHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCC
Confidence 11122222211 3579999999999998877666421 2358999999
Q ss_pred CCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEE-------eCCCC-CHhHHHHHhcccCCCC--CccEEEEE
Q 001261 748 KDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN-------FDAPN-HYEDYVHRVGRTGRAG--RKGCAITF 817 (1112)
Q Consensus 748 ~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~-------~d~p~-s~~~y~QriGR~gR~G--~~g~~i~~ 817 (1112)
|++.+|..++..|++|.++|||||+++++|||+|.+.+||. |+.|. ...+|+||+|||||.| ..|.||+|
T Consensus 305 l~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~ 384 (720)
T PRK00254 305 LGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIV 384 (720)
T ss_pred CCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEE
Confidence 99999999999999999999999999999999999999994 55544 5679999999999975 57999999
Q ss_pred ecCCc
Q 001261 818 ISEED 822 (1112)
Q Consensus 818 ~~~~d 822 (1112)
++..+
T Consensus 385 ~~~~~ 389 (720)
T PRK00254 385 ATTEE 389 (720)
T ss_pred ecCcc
Confidence 87644
|
|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=400.86 Aligned_cols=334 Identities=19% Similarity=0.275 Sum_probs=253.2
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc
Q 001261 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547 (1112)
Q Consensus 468 ~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~ 547 (1112)
.|++++|++.+++.+...+|. |+|+|.++++.+.+|+++|+++|||||||++|.++++.++.. +.++|||+
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~--------~~k~v~i~ 72 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA--------GLKSIYIV 72 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh--------CCcEEEEe
Confidence 577899999999999999987 999999999999999999999999999999999999988753 46799999
Q ss_pred cchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccch
Q 001261 548 PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD 627 (1112)
Q Consensus 548 PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah 627 (1112)
|+++||.|+++.+.++. .+|+.+..++|+...... +...++|+|+||+++..++.... ..+.++++|||||||
T Consensus 73 P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~---~~l~~v~lvViDEaH 145 (674)
T PRK01172 73 PLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDP---YIINDVGLIVADEIH 145 (674)
T ss_pred chHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCCh---hHHhhcCEEEEecch
Confidence 99999999999999864 468888888887654322 23468999999999988775532 457889999999999
Q ss_pred hhhccCChhHHHHHHHh---cCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccC-Ccc--EEEEecccchhH
Q 001261 628 RMFDMGFEPQITRIVQN---IRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNK-DIT--QLVEVRPESDRF 701 (1112)
Q Consensus 628 ~~~~~gf~~~i~~il~~---~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~-~i~--q~~~~~~~~~k~ 701 (1112)
.+.+.++...+..++.. ++++.|+|+||||+++. ..++.+ ++.+. +.....+++.. .+. ..+.+.......
T Consensus 146 ~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~w-l~~~~-~~~~~r~vpl~~~i~~~~~~~~~~~~~~~ 222 (674)
T PRK01172 146 IIGDEDRGPTLETVLSSARYVNPDARILALSATVSNA-NELAQW-LNASL-IKSNFRPVPLKLGILYRKRLILDGYERSQ 222 (674)
T ss_pred hccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHHH-hCCCc-cCCCCCCCCeEEEEEecCeeeeccccccc
Confidence 99988888887777554 45788999999999763 445543 33221 11111111000 000 000111111111
Q ss_pred HHHHHHHHhh-hcCCeEEEEeCCHHHHHHHHHHHHhc-------------------------CCCeeeecCCCCHHHHHH
Q 001261 702 LRLLELLGEW-YEKGKILIFVHSQEKCDALFRDLLKH-------------------------GYPCLSLHGAKDQTDRES 755 (1112)
Q Consensus 702 ~~ll~~l~~~-~~~~~vLIF~~s~~~~~~l~~~L~~~-------------------------g~~~~~ihg~~~~~~R~~ 755 (1112)
..+..++... ..++++||||+++..|+.++..|... ...+.++||+|++.+|..
T Consensus 223 ~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ 302 (674)
T PRK01172 223 VDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRF 302 (674)
T ss_pred ccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHH
Confidence 1123333332 34679999999999999999888653 125788999999999999
Q ss_pred HHHHhhcCCccEEEecCcccccCCCCCccEEEEeCC---------CCCHhHHHHHhcccCCCCC--ccEEEEEecCC
Q 001261 756 TISDFKSNVCNLLIATSVAARGLDVKELELVINFDA---------PNHYEDYVHRVGRTGRAGR--KGCAITFISEE 821 (1112)
Q Consensus 756 ~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~---------p~s~~~y~QriGR~gR~G~--~g~~i~~~~~~ 821 (1112)
+++.|++|.++|||||+++++|||+|+..+|| ++. |.+..+|.||+|||||.|. .|.+++|+...
T Consensus 303 ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~ 378 (674)
T PRK01172 303 IEEMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASP 378 (674)
T ss_pred HHHHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCc
Confidence 99999999999999999999999999875554 443 5578899999999999984 57788776543
|
|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=388.52 Aligned_cols=310 Identities=16% Similarity=0.215 Sum_probs=236.1
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCChHHHH---------HHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH
Q 001261 492 PIQAQALPVIMSGRDCIGVAKTGSGKTLA---------FVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 492 ~iQ~~ai~~il~g~dvii~a~TGsGKT~~---------~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~ 562 (1112)
.+|.++++.++.|+++|++|+||||||++ |++|.+..+.... ....+++++|++||++||.|+...+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~--~~~~~~~ilvt~PrreLa~qi~~~i~~ 244 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID--PNFIERPIVLSLPRVALVRLHSITLLK 244 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc--cccCCcEEEEECcHHHHHHHHHHHHHH
Confidence 68999999999999999999999999997 4444554432211 122356899999999999999999887
Q ss_pred Hhhh---cCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHH
Q 001261 563 FAKV---MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQIT 639 (1112)
Q Consensus 563 ~~~~---~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~ 639 (1112)
.... .++.+.+.+||... .+.....++.+|||+|++.. ...|.++++|||||||.+..++ +.+.
T Consensus 245 ~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~----------l~~L~~v~~VVIDEaHEr~~~~--DllL 311 (675)
T PHA02653 245 SLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT----------LNKLFDYGTVIIDEVHEHDQIG--DIII 311 (675)
T ss_pred HhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc----------ccccccCCEEEccccccCccch--hHHH
Confidence 6544 36677888999873 22233334689999997631 1357889999999999887665 4455
Q ss_pred HHHHhcC-CCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEeccc---------chhHHHHHHHHH
Q 001261 640 RIVQNIR-PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPE---------SDRFLRLLELLG 709 (1112)
Q Consensus 640 ~il~~~~-~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~---------~~k~~~ll~~l~ 709 (1112)
.++..+. ..+|+|+||||++..+..+ ..++++|..+.+.+.. ...+.+.+..... ......++..+.
T Consensus 312 ~llk~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~grt--~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~ 388 (675)
T PHA02653 312 AVARKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGGT--LFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALK 388 (675)
T ss_pred HHHHHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCCc--CCCeEEEEeecCcccccchhhhHHHHHHHHHHHH
Confidence 5555443 3469999999999888877 5788888888876532 2344544432110 111122334443
Q ss_pred hhh--cCCeEEEEeCCHHHHHHHHHHHHhc--CCCeeeecCCCCHHHHHHHHHHh-hcCCccEEEecCcccccCCCCCcc
Q 001261 710 EWY--EKGKILIFVHSQEKCDALFRDLLKH--GYPCLSLHGAKDQTDRESTISDF-KSNVCNLLIATSVAARGLDVKELE 784 (1112)
Q Consensus 710 ~~~--~~~~vLIF~~s~~~~~~l~~~L~~~--g~~~~~ihg~~~~~~R~~~~~~F-~~g~~~VLVaT~v~~~GlDi~~v~ 784 (1112)
... ..+++||||+++..|+.++..|... ++.+..+||+|++. ..++..| ++|..+|||||++|++|||||+|.
T Consensus 389 ~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~ 466 (675)
T PHA02653 389 KYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNAT 466 (675)
T ss_pred HhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCee
Confidence 322 3468999999999999999999887 79999999999985 4667777 689999999999999999999999
Q ss_pred EEEEeC---CCC---------CHhHHHHHhcccCCCCCccEEEEEecCCc
Q 001261 785 LVINFD---APN---------HYEDYVHRVGRTGRAGRKGCAITFISEED 822 (1112)
Q Consensus 785 ~VI~~d---~p~---------s~~~y~QriGR~gR~G~~g~~i~~~~~~d 822 (1112)
+||+++ .|. |.+.|+||+|||||. +.|.||.|+++.+
T Consensus 467 ~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~ 515 (675)
T PHA02653 467 HVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDL 515 (675)
T ss_pred EEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHH
Confidence 999998 565 888999999999999 6999999999876
|
|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=392.71 Aligned_cols=303 Identities=20% Similarity=0.277 Sum_probs=238.3
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH-HhhhcCceE
Q 001261 493 IQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK-FAKVMGVRC 571 (1112)
Q Consensus 493 iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~-~~~~~~i~~ 571 (1112)
+-.+.+..|..++++|++|+||||||++|.++++..+. .++++||+.|||++|.|++..+.. +....|..+
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~--------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~V 77 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG--------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTV 77 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc--------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEE
Confidence 44566677778899999999999999999999997752 246899999999999999998754 334456666
Q ss_pred EEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccch-hhhccCChhHH-HHHHHhcCCCC
Q 001261 572 VPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD-RMFDMGFEPQI-TRIVQNIRPDR 649 (1112)
Q Consensus 572 ~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah-~~~~~gf~~~i-~~il~~~~~~~ 649 (1112)
...+++.. .+...+.|+|+|||+|++++... ..|.++++|||||+| ++++.+|...+ ..+...++++.
T Consensus 78 Gy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~d----~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dl 147 (819)
T TIGR01970 78 GYRVRGEN------KVSRRTRLEVVTEGILTRMIQDD----PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDL 147 (819)
T ss_pred EEEEcccc------ccCCCCcEEEECCcHHHHHHhhC----cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCc
Confidence 65555542 23456899999999999988653 478999999999999 78888876544 45566678899
Q ss_pred cEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHH-----HHHHHHHhhhcCCeEEEEeCCH
Q 001261 650 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFL-----RLLELLGEWYEKGKILIFVHSQ 724 (1112)
Q Consensus 650 q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~-----~ll~~l~~~~~~~~vLIF~~s~ 724 (1112)
|+|+||||++... + ..++.++..+.+.+...+ +.+.+.......++. .+..++.. ..+++||||+++
T Consensus 148 qlIlmSATl~~~~--l-~~~l~~~~vI~~~gr~~p---Ve~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg~ 219 (819)
T TIGR01970 148 KILAMSATLDGER--L-SSLLPDAPVVESEGRSFP---VEIRYLPLRGDQRLEDAVSRAVEHALAS--ETGSILVFLPGQ 219 (819)
T ss_pred eEEEEeCCCCHHH--H-HHHcCCCcEEEecCccee---eeeEEeecchhhhHHHHHHHHHHHHHHh--cCCcEEEEECCH
Confidence 9999999998653 3 456665555666554332 444443333333322 22222222 358999999999
Q ss_pred HHHHHHHHHHHh---cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCC--------
Q 001261 725 EKCDALFRDLLK---HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPN-------- 793 (1112)
Q Consensus 725 ~~~~~l~~~L~~---~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~-------- 793 (1112)
.+++.++..|.. .++.++.+||+|++.+|..++..|.+|..+|||||+++++|||||+|++|||+++|.
T Consensus 220 ~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~ 299 (819)
T TIGR01970 220 AEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKT 299 (819)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCccccccccccc
Confidence 999999999987 478999999999999999999999999999999999999999999999999999875
Q ss_pred ----------CHhHHHHHhcccCCCCCccEEEEEecCCc
Q 001261 794 ----------HYEDYVHRVGRTGRAGRKGCAITFISEED 822 (1112)
Q Consensus 794 ----------s~~~y~QriGR~gR~G~~g~~i~~~~~~d 822 (1112)
|.++|+||+||+||. .+|.||.||++.+
T Consensus 300 g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~ 337 (819)
T TIGR01970 300 GITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQ 337 (819)
T ss_pred CCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHH
Confidence 345699999999999 6999999998754
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=404.49 Aligned_cols=297 Identities=24% Similarity=0.307 Sum_probs=244.4
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+|+ .|+++|..++|.++.|+|++++||||||||+ |+++++..+.. .++++|||+||++||.|++..++.++
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~-------~g~~alIL~PTreLa~Qi~~~l~~l~ 147 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK-------KGKKSYIIFPTRLLVEQVVEKLEKFG 147 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeccHHHHHHHHHHHHHHh
Confidence 577 8999999999999999999999999999995 66666655432 37889999999999999999999999
Q ss_pred hhcCceEEEEeCCCCh-----HHHHHHHhc-CCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhc-------
Q 001261 565 KVMGVRCVPVYGGSGV-----AQQISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD------- 631 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~-----~~~~~~l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~------- 631 (1112)
...++.+..++|+.+. ..+...+.. +++|+|+||++|.+++.. ..+..+++|||||||+|++
T Consensus 148 ~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~-----l~~~~~~~lVvDEaD~~L~~~k~id~ 222 (1176)
T PRK09401 148 EKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDE-----LPKKKFDFVFVDDVDAVLKSSKNIDK 222 (1176)
T ss_pred hhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHh-----ccccccCEEEEEChHHhhhcccchhh
Confidence 9989888888877652 333445554 589999999999988752 3556799999999999986
Q ss_pred ----cCCh-hHHHHHHHhcCC------------------------CCcEEEEeccccHH-HHHHHHHhcCCCeEEEEcCc
Q 001261 632 ----MGFE-PQITRIVQNIRP------------------------DRQTVLFSATFPRQ-VEILARKVLNKPVEIQVGGR 681 (1112)
Q Consensus 632 ----~gf~-~~i~~il~~~~~------------------------~~q~il~SAT~~~~-~~~l~~~~~~~p~~i~i~~~ 681 (1112)
+||. ..+..++..++. ..|+++||||+++. +.. .++.+++.+.++..
T Consensus 223 ~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~ 299 (1176)
T PRK09401 223 LLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSP 299 (1176)
T ss_pred HHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecCc
Confidence 7885 678888877764 68999999999864 332 34456666777766
Q ss_pred ccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHH---HHHHHHHHHhcCCCeeeecCCCCHHHHHHHHH
Q 001261 682 SVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEK---CDALFRDLLKHGYPCLSLHGAKDQTDRESTIS 758 (1112)
Q Consensus 682 ~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~---~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~ 758 (1112)
.....++.+.+.... ++...|+.++... +.++||||++... |+.|+..|...|+++..+||+| ...++
T Consensus 300 ~~~~rnI~~~yi~~~--~k~~~L~~ll~~l--~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~ 370 (1176)
T PRK09401 300 VFYLRNIVDSYIVDE--DSVEKLVELVKRL--GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFE 370 (1176)
T ss_pred ccccCCceEEEEEcc--cHHHHHHHHHHhc--CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHH
Confidence 666677887776554 5666777777653 3579999999776 9999999999999999999999 23469
Q ss_pred HhhcCCccEEEe----cCcccccCCCCC-ccEEEEeCCCC------CHhHHHHHhcccCC
Q 001261 759 DFKSNVCNLLIA----TSVAARGLDVKE-LELVINFDAPN------HYEDYVHRVGRTGR 807 (1112)
Q Consensus 759 ~F~~g~~~VLVa----T~v~~~GlDi~~-v~~VI~~d~p~------s~~~y~QriGR~gR 807 (1112)
.|++|+++|||| |++++||||||+ |.+||||++|. ....|.|++||+..
T Consensus 371 ~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 371 KFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred HHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 999999999999 699999999999 89999999999 56889999999973
|
|
| >KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-40 Score=350.06 Aligned_cols=317 Identities=31% Similarity=0.537 Sum_probs=252.8
Q ss_pred CcEEEEccchhHHHHHHHHHHHHhhhc---CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCC
Q 001261 541 PVGLIMAPTRELVQQIHSDIRKFAKVM---GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRR 617 (1112)
Q Consensus 541 ~~~LIl~PtreLa~Q~~~~~~~~~~~~---~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~ 617 (1112)
|.+||+-|.++|+.|.++.|++|-... .++..++.||.-...|+..+..|++|||+||++|.+.+... ...|.+
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g---~~~lt~ 363 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKG---LVTLTH 363 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhcc---ceeeee
Confidence 678999999999999999888876544 45667889999999999999999999999999999998653 367889
Q ss_pred ceEEEeccchhhhccCChhHHHHHHHhcCC------CCcEEEEeccccH-HHHHHHHHhcCCCeEEEEcCcccccCCccE
Q 001261 618 VTYLVMDEADRMFDMGFEPQITRIVQNIRP------DRQTVLFSATFPR-QVEILARKVLNKPVEIQVGGRSVVNKDITQ 690 (1112)
Q Consensus 618 i~~vViDEah~~~~~gf~~~i~~il~~~~~------~~q~il~SAT~~~-~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q 690 (1112)
+.|+|+|||+.++..++...|..+...++. ..|.++.|||+.. .+..+...+++-|..+.+.+...++..+.+
T Consensus 364 crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHh 443 (725)
T KOG0349|consen 364 CRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHH 443 (725)
T ss_pred eEEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhcc
Confidence 999999999999998999999888887763 3689999999753 355677788899988888887777666665
Q ss_pred EEEecccc--hhHHH----------------------------HHHHHHhh--------hcCCeEEEEeCCHHHHHHHHH
Q 001261 691 LVEVRPES--DRFLR----------------------------LLELLGEW--------YEKGKILIFVHSQEKCDALFR 732 (1112)
Q Consensus 691 ~~~~~~~~--~k~~~----------------------------ll~~l~~~--------~~~~~vLIF~~s~~~~~~l~~ 732 (1112)
.+....+. .-+.. .+.+|... ....+.||||.++.+|+.|..
T Consensus 444 vv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer 523 (725)
T KOG0349|consen 444 VVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLER 523 (725)
T ss_pred ceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHH
Confidence 55432211 11111 11222111 123589999999999999999
Q ss_pred HHHhcC---CCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCC
Q 001261 733 DLLKHG---YPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAG 809 (1112)
Q Consensus 733 ~L~~~g---~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G 809 (1112)
++.+.| |+|+++||+..+.+|...++.|+.+..++||||++++|||||.++-+|||..+|..-..|+|||||+||+.
T Consensus 524 ~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgrae 603 (725)
T KOG0349|consen 524 MMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAE 603 (725)
T ss_pred HHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhh
Confidence 999864 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEEecCCcc--------------------------------CchHHHHHHHhhccCCCChhHHHHHHHHHHHHhh
Q 001261 810 RKGCAITFISEEDA--------------------------------KYSPDLVKALELSEQVVPDDLKALADSFMAKVNQ 857 (1112)
Q Consensus 810 ~~g~~i~~~~~~d~--------------------------------~~~~~i~~~l~~~~~~vp~~l~~~~~~~~~~~~~ 857 (1112)
+-|.+|+|+..... .++..+...|+...++|.+.+.--.+.|-.++..
T Consensus 604 rmglaislvat~~ekvwyh~c~srgr~c~nt~l~e~~gc~iwyne~~llaeve~hln~ti~qv~~~~~vpv~~fdgkv~y 683 (725)
T KOG0349|consen 604 RMGLAISLVATVPEKVWYHWCKSRGRSCNNTNLTEVRGCCIWYNEPNLLAEVEDHLNITIQQVDKTMDVPVNDFDGKVVY 683 (725)
T ss_pred hcceeEEEeeccchheeehhhhccCCcccCCccccccceEEEeCchhHHHHHHHhhcceeeeeCCCCCCcccccCCeEEe
Confidence 99999998854322 3445555666666666666555555556555544
Q ss_pred hhh
Q 001261 858 GLE 860 (1112)
Q Consensus 858 ~~~ 860 (1112)
|..
T Consensus 684 gqk 686 (725)
T KOG0349|consen 684 GQK 686 (725)
T ss_pred ccc
Confidence 443
|
|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-38 Score=363.29 Aligned_cols=362 Identities=21% Similarity=0.289 Sum_probs=287.2
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHcC------CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchh
Q 001261 478 IMETIRKLNYEKPMPIQAQALPVIMSG------RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRE 551 (1112)
Q Consensus 478 l~~~l~~~~~~~pt~iQ~~ai~~il~g------~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptre 551 (1112)
+.+.+..+.| +||..|.++|..|... .+-|++|..|||||+++++.|+..+.. |.++.+++||--
T Consensus 252 ~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~--------G~Q~ALMAPTEI 322 (677)
T COG1200 252 LAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA--------GYQAALMAPTEI 322 (677)
T ss_pred HHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc--------CCeeEEeccHHH
Confidence 3344567887 6999999999999854 468999999999999999999988654 789999999999
Q ss_pred HHHHHHHHHHHHhhhcCceEEEEeCCCChH---HHHHHHhcC-CeEEEeCchHHHHHHHhcCCcccccCCceEEEeccch
Q 001261 552 LVQQIHSDIRKFAKVMGVRCVPVYGGSGVA---QQISELKRG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD 627 (1112)
Q Consensus 552 La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~---~~~~~l~~~-~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah 627 (1112)
||.|+|..+.+++..+|+++..++|..... +....+..| .+|||+|+..+.+- ..|+++.+||+||-|
T Consensus 323 LA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~--------V~F~~LgLVIiDEQH 394 (677)
T COG1200 323 LAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDK--------VEFHNLGLVIIDEQH 394 (677)
T ss_pred HHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcc--------eeecceeEEEEeccc
Confidence 999999999999999999999999976543 445666666 79999999866543 478899999999999
Q ss_pred hhhccCChhHHHHHHHhcCC-CCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHH
Q 001261 628 RMFDMGFEPQITRIVQNIRP-DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLE 706 (1112)
Q Consensus 628 ~~~~~gf~~~i~~il~~~~~-~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~ 706 (1112)
| |+.+-...+..... ...+++||||+-|.. ++...+.+-..-.+...+.....|...+.. ..+...+++
T Consensus 395 R-----FGV~QR~~L~~KG~~~Ph~LvMTATPIPRT--LAlt~fgDldvS~IdElP~GRkpI~T~~i~---~~~~~~v~e 464 (677)
T COG1200 395 R-----FGVHQRLALREKGEQNPHVLVMTATPIPRT--LALTAFGDLDVSIIDELPPGRKPITTVVIP---HERRPEVYE 464 (677)
T ss_pred c-----ccHHHHHHHHHhCCCCCcEEEEeCCCchHH--HHHHHhccccchhhccCCCCCCceEEEEec---cccHHHHHH
Confidence 9 67777777777766 688999999986653 555666665545555555555566555433 244455555
Q ss_pred HHHhhh-cCCeEEEEeCCHH--------HHHHHHHHHHhc--CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCccc
Q 001261 707 LLGEWY-EKGKILIFVHSQE--------KCDALFRDLLKH--GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA 775 (1112)
Q Consensus 707 ~l~~~~-~~~~vLIF~~s~~--------~~~~l~~~L~~~--g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~ 775 (1112)
.+.... .+.++.|.|+-++ .+..++..|... ++.+..+||.|+..+++.+|..|++|+++|||||.|++
T Consensus 465 ~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIE 544 (677)
T COG1200 465 RIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIE 544 (677)
T ss_pred HHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEE
Confidence 555444 4558999998665 456677777753 67799999999999999999999999999999999999
Q ss_pred ccCCCCCccEEEEeCCCCCHhHHHHH-hcccCCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhHHHHHHHHHHH
Q 001261 776 RGLDVKELELVINFDAPNHYEDYVHR-VGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAK 854 (1112)
Q Consensus 776 ~GlDi~~v~~VI~~d~p~s~~~y~Qr-iGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~~~~~~~~~ 854 (1112)
.|||+|+++++|++++-...-.-+|+ -||+||.+.+++|++++.+........-++.+..
T Consensus 545 VGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im~~------------------- 605 (677)
T COG1200 545 VGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIMRE------------------- 605 (677)
T ss_pred ecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHHHHHHh-------------------
Confidence 99999999999999998875555555 5999999999999999987654333333333221
Q ss_pred HhhhhhcccCCCCCCCCcCCChhHHHHHHHHHHHHHHHcCCCCC
Q 001261 855 VNQGLEQAHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEED 898 (1112)
Q Consensus 855 ~~~~~~~~~~~~~~g~g~~~~~~~~~~r~~~~~~~~~~~g~~~~ 898 (1112)
.-+||.+++.|+++||.|+.+|.+|+|+.+-
T Consensus 606 -------------t~DGF~IAE~DLklRGpGe~lG~rQSG~~~f 636 (677)
T COG1200 606 -------------TTDGFVIAEEDLKLRGPGELLGTRQSGLPEF 636 (677)
T ss_pred -------------cCCcceehhhhHhccCCccccCCcccCCcce
Confidence 2479999999999999999999999997653
|
|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=374.25 Aligned_cols=343 Identities=24% Similarity=0.334 Sum_probs=270.6
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhH
Q 001261 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTREL 552 (1112)
Q Consensus 473 ~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreL 552 (1112)
-|++.+.+.+... |..|||.|.+|||.|.+|+++|++||||||||++++||++..|..........+-.||+|+|.++|
T Consensus 7 ~l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkAL 85 (814)
T COG1201 7 ILDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKAL 85 (814)
T ss_pred hcCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHH
Confidence 3678888888877 999999999999999999999999999999999999999999988632223456789999999999
Q ss_pred HHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhcc
Q 001261 553 VQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDM 632 (1112)
Q Consensus 553 a~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~ 632 (1112)
.+.+...+..++..+|+.+...+|.++..+....+++.++|+|+||+.|.-+|... .....|.++.+|||||.|.+.+.
T Consensus 86 n~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~-~~r~~l~~vr~VIVDEiHel~~s 164 (814)
T COG1201 86 NNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSP-KFRELLRDVRYVIVDEIHALAES 164 (814)
T ss_pred HHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCH-HHHHHhcCCcEEEeehhhhhhcc
Confidence 99999999999999999999999999998888888888999999999997666443 23346889999999999998766
Q ss_pred CChhHHH----HHHHhcCCCCcEEEEeccccHHHHHHHHHhcCC--CeEEEEcCcccccCCccEEEEecc---cchhHHH
Q 001261 633 GFEPQIT----RIVQNIRPDRQTVLFSATFPRQVEILARKVLNK--PVEIQVGGRSVVNKDITQLVEVRP---ESDRFLR 703 (1112)
Q Consensus 633 gf~~~i~----~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~--p~~i~i~~~~~~~~~i~q~~~~~~---~~~k~~~ 703 (1112)
..+.++. ++..... +.|.|++|||..+ ....++++... ++.|.-... .....+.-...... ...-...
T Consensus 165 KRG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~-~~~varfL~g~~~~~~Iv~~~~-~k~~~i~v~~p~~~~~~~~~~~~~ 241 (814)
T COG1201 165 KRGVQLALSLERLRELAG-DFQRIGLSATVGP-PEEVAKFLVGFGDPCEIVDVSA-AKKLEIKVISPVEDLIYDEELWAA 241 (814)
T ss_pred ccchhhhhhHHHHHhhCc-ccEEEeehhccCC-HHHHHHHhcCCCCceEEEEccc-CCcceEEEEecCCccccccchhHH
Confidence 5554444 3333333 8999999999874 44455655554 444332211 11111111111111 0112233
Q ss_pred HHHHHHhhhc-CCeEEEEeCCHHHHHHHHHHHHhcC-CCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCC
Q 001261 704 LLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHG-YPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVK 781 (1112)
Q Consensus 704 ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~g-~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~ 781 (1112)
++..|..... ...+|||+||+..++.|+..|.+.+ ..+..+||.++.+.|..+.+.|++|..+++|||+.++-||||.
T Consensus 242 ~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG 321 (814)
T COG1201 242 LYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIG 321 (814)
T ss_pred HHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccC
Confidence 3333333332 3489999999999999999999976 8999999999999999999999999999999999999999999
Q ss_pred CccEEEEeCCCCCHhHHHHHhcccCC-CCCccEEEEEecC
Q 001261 782 ELELVINFDAPNHYEDYVHRVGRTGR-AGRKGCAITFISE 820 (1112)
Q Consensus 782 ~v~~VI~~d~p~s~~~y~QriGR~gR-~G~~g~~i~~~~~ 820 (1112)
++++||+|+.|.+...++||+||+|. .|....++++...
T Consensus 322 ~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 322 DIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred CceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 99999999999999999999999996 4555666665554
|
|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=397.64 Aligned_cols=307 Identities=21% Similarity=0.261 Sum_probs=228.9
Q ss_pred EEcCCCChHHHHHHHHHHHHHhcCCCC-----CCCCCCcEEEEccchhHHHHHHHHHHHHhh------------hcCceE
Q 001261 509 GVAKTGSGKTLAFVLPMLRHIKDQPPV-----AAGDGPVGLIMAPTRELVQQIHSDIRKFAK------------VMGVRC 571 (1112)
Q Consensus 509 i~a~TGsGKT~~~llp~l~~l~~~~~~-----~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~------------~~~i~~ 571 (1112)
|++|||||||++|+||+|..+..+... ....+.++|||+||++|++|++..++..+. .+++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999998764311 112468999999999999999998875322 247899
Q ss_pred EEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhH----HHHHHHhcCC
Q 001261 572 VPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQ----ITRIVQNIRP 647 (1112)
Q Consensus 572 ~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~----i~~il~~~~~ 647 (1112)
...+|+++..++...+.+.++|||+||++|..+|... ....|+++.+|||||+|.|++..++.+ +.+|...+..
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk--~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~ 158 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSR--ARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHT 158 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhh--hhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCC
Confidence 9999999998887777778999999999998887642 234689999999999999987655544 4445555567
Q ss_pred CCcEEEEeccccHHHHHHHHHhcC-CCeEEEEcCcccccCCccEEEEecccc-------------------hhHHHH-HH
Q 001261 648 DRQTVLFSATFPRQVEILARKVLN-KPVEIQVGGRSVVNKDITQLVEVRPES-------------------DRFLRL-LE 706 (1112)
Q Consensus 648 ~~q~il~SAT~~~~~~~l~~~~~~-~p~~i~i~~~~~~~~~i~q~~~~~~~~-------------------~k~~~l-l~ 706 (1112)
..|+|+||||+++ ...++..+.. .|+.+.. ........+...+...... .....+ ..
T Consensus 159 ~~QrIgLSATI~n-~eevA~~L~g~~pv~Iv~-~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~ 236 (1490)
T PRK09751 159 SAQRIGLSATVRS-ASDVAAFLGGDRPVTVVN-PPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETG 236 (1490)
T ss_pred CCeEEEEEeeCCC-HHHHHHHhcCCCCEEEEC-CCCCcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHHH
Confidence 7899999999987 4556654443 3655432 2111111222111111100 000111 12
Q ss_pred HHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcC---------------------------------CCeeeecCCCCHHHH
Q 001261 707 LLGEWYEKGKILIFVHSQEKCDALFRDLLKHG---------------------------------YPCLSLHGAKDQTDR 753 (1112)
Q Consensus 707 ~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g---------------------------------~~~~~ihg~~~~~~R 753 (1112)
++.......++||||||+..|+.++..|.+.. +.+.++||+|++++|
T Consensus 237 il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR 316 (1490)
T PRK09751 237 ILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQR 316 (1490)
T ss_pred HHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHH
Confidence 33333346789999999999999999997631 226789999999999
Q ss_pred HHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCC-CCccEEEEEec
Q 001261 754 ESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRA-GRKGCAITFIS 819 (1112)
Q Consensus 754 ~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~-G~~g~~i~~~~ 819 (1112)
..+++.|++|.++|||||+++++||||+.|++||+|++|.+..+|+||+||+||. |..+.++++..
T Consensus 317 ~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~ 383 (1490)
T PRK09751 317 AITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPR 383 (1490)
T ss_pred HHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999996 33445554333
|
|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-38 Score=389.04 Aligned_cols=305 Identities=20% Similarity=0.298 Sum_probs=237.2
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH-HhhhcCceE
Q 001261 493 IQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK-FAKVMGVRC 571 (1112)
Q Consensus 493 iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~-~~~~~~i~~ 571 (1112)
+-.+.+..+.+++++|++|+||||||++|.++++.... .+.++||++|||++|.|++..+.. +....|..+
T Consensus 9 ~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~--------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~V 80 (812)
T PRK11664 9 VLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG--------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETV 80 (812)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC--------cCCeEEEECChHHHHHHHHHHHHHHhCcccCceE
Confidence 34466777788999999999999999999999986521 134799999999999999998854 444467777
Q ss_pred EEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccch-hhhccCChh-HHHHHHHhcCCCC
Q 001261 572 VPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD-RMFDMGFEP-QITRIVQNIRPDR 649 (1112)
Q Consensus 572 ~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah-~~~~~gf~~-~i~~il~~~~~~~ 649 (1112)
...+++... ....+.|+|+|||+|++++... ..|+++++|||||+| ++++.++.. .+..++..++++.
T Consensus 81 Gy~vr~~~~------~~~~t~I~v~T~G~Llr~l~~d----~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~l 150 (812)
T PRK11664 81 GYRMRAESK------VGPNTRLEVVTEGILTRMIQRD----PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDL 150 (812)
T ss_pred EEEecCccc------cCCCCcEEEEChhHHHHHHhhC----CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccc
Confidence 777776542 2245789999999999988653 478999999999999 567665433 3345667788999
Q ss_pred cEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHH-HHHHHHhhh--cCCeEEEEeCCHHH
Q 001261 650 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLR-LLELLGEWY--EKGKILIFVHSQEK 726 (1112)
Q Consensus 650 q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~-ll~~l~~~~--~~~~vLIF~~s~~~ 726 (1112)
|+|+||||++.. .+ ..++.++..+.+.+..+ .+.+.+.......++.. +...|.... ..+.+||||+++.+
T Consensus 151 qlilmSATl~~~--~l-~~~~~~~~~I~~~gr~~---pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~e 224 (812)
T PRK11664 151 KLLIMSATLDND--RL-QQLLPDAPVIVSEGRSF---PVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGE 224 (812)
T ss_pred eEEEEecCCCHH--HH-HHhcCCCCEEEecCccc---cceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHH
Confidence 999999999865 23 45666655566555432 34555443443344331 111222221 35899999999999
Q ss_pred HHHHHHHHHh---cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCC----------
Q 001261 727 CDALFRDLLK---HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPN---------- 793 (1112)
Q Consensus 727 ~~~l~~~L~~---~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~---------- 793 (1112)
++.++..|.. .++.+..+||+|++.+|..++..|.+|..+|||||+++++||||++|++|||++++.
T Consensus 225 i~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~ 304 (812)
T PRK11664 225 IQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGL 304 (812)
T ss_pred HHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCc
Confidence 9999999987 578899999999999999999999999999999999999999999999999988765
Q ss_pred --------CHhHHHHHhcccCCCCCccEEEEEecCCc
Q 001261 794 --------HYEDYVHRVGRTGRAGRKGCAITFISEED 822 (1112)
Q Consensus 794 --------s~~~y~QriGR~gR~G~~g~~i~~~~~~d 822 (1112)
|.++|+||+||+||. ..|.||.|+++.+
T Consensus 305 ~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~ 340 (812)
T PRK11664 305 TRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQ 340 (812)
T ss_pred ceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHH
Confidence 336899999999999 5999999998754
|
|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=360.20 Aligned_cols=328 Identities=23% Similarity=0.380 Sum_probs=260.5
Q ss_pred HHHHH-CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHH
Q 001261 480 ETIRK-LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHS 558 (1112)
Q Consensus 480 ~~l~~-~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~ 558 (1112)
..|+. +||...+|-|.++|..+++|+|+|++.|||.||++||.+|++-. .| .+|||.|..+|......
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~----------~G-~TLVVSPLiSLM~DQV~ 75 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL----------EG-LTLVVSPLISLMKDQVD 75 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc----------CC-CEEEECchHHHHHHHHH
Confidence 44553 89999999999999999999999999999999999999999843 23 68999999999876666
Q ss_pred HHHHHhhhcCceEEEEeCCCChHHHH---HHHhcC-CeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccC-
Q 001261 559 DIRKFAKVMGVRCVPVYGGSGVAQQI---SELKRG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG- 633 (1112)
Q Consensus 559 ~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~~~-~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~g- 633 (1112)
.+.. .|+.+.++.+..+..+.. ..+..| .+|++.+|++|..-...+. ..--.+.+|||||||++.+||
T Consensus 76 ~l~~----~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~---L~~~~i~l~vIDEAHCiSqWGh 148 (590)
T COG0514 76 QLEA----AGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLEL---LKRLPISLVAIDEAHCISQWGH 148 (590)
T ss_pred HHHH----cCceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHH---HHhCCCceEEechHHHHhhcCC
Confidence 5555 588999988887766653 344444 6999999999854322211 123468899999999999998
Q ss_pred -ChhHHHHHHHhc--CCCCcEEEEeccccHHHHHHHHHhcC--CCeEEEEcCcccccCCccEEEEecc-cchhHHHHHHH
Q 001261 634 -FEPQITRIVQNI--RPDRQTVLFSATFPRQVEILARKVLN--KPVEIQVGGRSVVNKDITQLVEVRP-ESDRFLRLLEL 707 (1112)
Q Consensus 634 -f~~~i~~il~~~--~~~~q~il~SAT~~~~~~~l~~~~~~--~p~~i~i~~~~~~~~~i~q~~~~~~-~~~k~~~ll~~ 707 (1112)
|.+.+..+-... -++..++.||||.++.+...+...+. .+. +.+. ++..++|...+.... ...++. +
T Consensus 149 dFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~-~~~~--sfdRpNi~~~v~~~~~~~~q~~----f 221 (590)
T COG0514 149 DFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDAN-IFRG--SFDRPNLALKVVEKGEPSDQLA----F 221 (590)
T ss_pred ccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcc-eEEe--cCCCchhhhhhhhcccHHHHHH----H
Confidence 999988774433 24788999999999998776666554 332 2222 333444443332222 222222 3
Q ss_pred HHh--hhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccE
Q 001261 708 LGE--WYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELEL 785 (1112)
Q Consensus 708 l~~--~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~ 785 (1112)
|.. ....+..||||.|+..++.++..|...|+.+..|||||+..+|..+.+.|.++.++|||||.++++|||.|+|.+
T Consensus 222 i~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRf 301 (590)
T COG0514 222 LATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRF 301 (590)
T ss_pred HHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceE
Confidence 332 234567899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHH
Q 001261 786 VINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKA 832 (1112)
Q Consensus 786 VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~ 832 (1112)
||||++|.+++.|+|-+|||||.|....|++||++.|......++..
T Consensus 302 ViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 302 VIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred EEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHh
Confidence 99999999999999999999999999999999999997766555543
|
|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=404.85 Aligned_cols=322 Identities=20% Similarity=0.240 Sum_probs=253.4
Q ss_pred HHHHHHHH-CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHH
Q 001261 477 KIMETIRK-LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQ 555 (1112)
Q Consensus 477 ~l~~~l~~-~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q 555 (1112)
.+.+.+++ +|| .|+++|.++||.++.|+|++++||||||||++++++++.... .++++|||+||++|+.|
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~--------~g~~aLVl~PTreLa~Q 137 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL--------KGKKCYIILPTTLLVKQ 137 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh--------cCCeEEEEECHHHHHHH
Confidence 34455655 899 699999999999999999999999999999966655554321 36789999999999999
Q ss_pred HHHHHHHHhhhc--CceEEEEeCCCChHHHH---HHHhcC-CeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhh
Q 001261 556 IHSDIRKFAKVM--GVRCVPVYGGSGVAQQI---SELKRG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRM 629 (1112)
Q Consensus 556 ~~~~~~~~~~~~--~i~~~~~~gg~~~~~~~---~~l~~~-~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~ 629 (1112)
++..+..++..+ ++.+..++||.+..++. ..+..| ++|||+||++|.+.+... . ..++++|||||||+|
T Consensus 138 i~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l----~-~~~i~~iVVDEAD~m 212 (1638)
T PRK14701 138 TVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM----K-HLKFDFIFVDDVDAF 212 (1638)
T ss_pred HHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH----h-hCCCCEEEEECceec
Confidence 999999998876 46778888998877663 345554 899999999998776431 1 267899999999999
Q ss_pred hc-----------cCChhHHHH----HHH----------------------hcCCCCc-EEEEeccccHHHHHHHHHhcC
Q 001261 630 FD-----------MGFEPQITR----IVQ----------------------NIRPDRQ-TVLFSATFPRQVEILARKVLN 671 (1112)
Q Consensus 630 ~~-----------~gf~~~i~~----il~----------------------~~~~~~q-~il~SAT~~~~~~~l~~~~~~ 671 (1112)
++ +||.+.+.. |+. .++...| ++++|||+++... ...++.
T Consensus 213 l~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~--~~~l~~ 290 (1638)
T PRK14701 213 LKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGD--RVKLYR 290 (1638)
T ss_pred cccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhH--HHHHhh
Confidence 86 589888864 432 2344556 6779999986421 224456
Q ss_pred CCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHH---HHHHHHHHHhcCCCeeeecCCC
Q 001261 672 KPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEK---CDALFRDLLKHGYPCLSLHGAK 748 (1112)
Q Consensus 672 ~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~---~~~l~~~L~~~g~~~~~ihg~~ 748 (1112)
.++.+.++.......++.+.+.......+ ..|+.+|... +..+||||++... |+.|+..|...|++|..+||+
T Consensus 291 ~~l~f~v~~~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~--g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~- 366 (1638)
T PRK14701 291 ELLGFEVGSGRSALRNIVDVYLNPEKIIK-EHVRELLKKL--GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK- 366 (1638)
T ss_pred cCeEEEecCCCCCCCCcEEEEEECCHHHH-HHHHHHHHhC--CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-
Confidence 77778887766666677777765544434 4677777654 4578999999775 589999999999999999995
Q ss_pred CHHHHHHHHHHhhcCCccEEEec----CcccccCCCCC-ccEEEEeCCCC---CHhHHHHHh-------------cccCC
Q 001261 749 DQTDRESTISDFKSNVCNLLIAT----SVAARGLDVKE-LELVINFDAPN---HYEDYVHRV-------------GRTGR 807 (1112)
Q Consensus 749 ~~~~R~~~~~~F~~g~~~VLVaT----~v~~~GlDi~~-v~~VI~~d~p~---s~~~y~Qri-------------GR~gR 807 (1112)
|..+++.|++|+++||||| ++++||||+|+ |.+|||||+|. +...|.|-. ||+||
T Consensus 367 ----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~ 442 (1638)
T PRK14701 367 ----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELK 442 (1638)
T ss_pred ----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcc
Confidence 8899999999999999999 59999999999 99999999999 777666655 99999
Q ss_pred CCCccEEEEEecCCc
Q 001261 808 AGRKGCAITFISEED 822 (1112)
Q Consensus 808 ~G~~g~~i~~~~~~d 822 (1112)
.|..+.++..+...+
T Consensus 443 ~g~~~~~~~~~~~~~ 457 (1638)
T PRK14701 443 EGIPIEGVLDVFPED 457 (1638)
T ss_pred cCCcchhHHHhHHHH
Confidence 998877775444443
|
|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=366.47 Aligned_cols=322 Identities=21% Similarity=0.223 Sum_probs=248.0
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+| ..|||+|..++|.++.|+ |+.+.||+|||++|++|++.+.. .|+.|+||+||++||.|.+.++..++
T Consensus 100 lg-~~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al--------~G~~v~VvTptreLA~qdae~~~~l~ 168 (656)
T PRK12898 100 LG-QRHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAAL--------AGLPVHVITVNDYLAERDAELMRPLY 168 (656)
T ss_pred hC-CCCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh--------cCCeEEEEcCcHHHHHHHHHHHHHHH
Confidence 55 379999999999999999 99999999999999999998754 37899999999999999999999999
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHH-HHHHHhcC----------------------CcccccCCceEE
Q 001261 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM-IDILCTSG----------------------GKITNLRRVTYL 621 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L-~~~l~~~~----------------------~~~~~l~~i~~v 621 (1112)
..+|+++.+++||.+.. ...+..+++|+|+|..-| .|+|..+- ....-...+.|+
T Consensus 169 ~~lGlsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~a 246 (656)
T PRK12898 169 EALGLTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFA 246 (656)
T ss_pred hhcCCEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhccccccee
Confidence 99999999999998643 445556899999999887 44443321 001123567899
Q ss_pred Eeccchhhh-ccC-----------------ChhHHHHHHHhc--------------------------------------
Q 001261 622 VMDEADRMF-DMG-----------------FEPQITRIVQNI-------------------------------------- 645 (1112)
Q Consensus 622 ViDEah~~~-~~g-----------------f~~~i~~il~~~-------------------------------------- 645 (1112)
||||+|.++ |.. +...+..++..+
T Consensus 247 IvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~ 326 (656)
T PRK12898 247 IVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRG 326 (656)
T ss_pred EeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhccc
Confidence 999999653 100 000000000000
Q ss_pred ------------------CCC-----------------------------------------------------------
Q 001261 646 ------------------RPD----------------------------------------------------------- 648 (1112)
Q Consensus 646 ------------------~~~----------------------------------------------------------- 648 (1112)
..+
T Consensus 327 ~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr 406 (656)
T PRK12898 327 AVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFR 406 (656)
T ss_pred chHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHH
Confidence 000
Q ss_pred --CcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhc-CCeEEEEeCCHH
Q 001261 649 --RQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE-KGKILIFVHSQE 725 (1112)
Q Consensus 649 --~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~ 725 (1112)
..+.+||||.+.....|...+..+++.|-... +. .....+.+.+.+...|+..|+..+..... ..++||||+|+.
T Consensus 407 ~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~k-p~-~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~ 484 (656)
T PRK12898 407 RYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNR-PS-QRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVA 484 (656)
T ss_pred hhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCC-Cc-cceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 23778999998877778777777765443222 21 22233444556667889999888876542 468999999999
Q ss_pred HHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCC---Ccc-----EEEEeCCCCCHhH
Q 001261 726 KCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVK---ELE-----LVINFDAPNHYED 797 (1112)
Q Consensus 726 ~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~---~v~-----~VI~~d~p~s~~~ 797 (1112)
.++.|+..|...|+++..|||.++ .++..+..|..+...|||||++++||+||+ +|. +||+|++|.+...
T Consensus 485 ~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~ 562 (656)
T PRK12898 485 ASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARI 562 (656)
T ss_pred HHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHH
Confidence 999999999999999999999865 455556666666678999999999999999 666 9999999999999
Q ss_pred HHHHhcccCCCCCccEEEEEecCCcc
Q 001261 798 YVHRVGRTGRAGRKGCAITFISEEDA 823 (1112)
Q Consensus 798 y~QriGR~gR~G~~g~~i~~~~~~d~ 823 (1112)
|+||+|||||.|.+|.|++|++.+|.
T Consensus 563 y~hr~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 563 DRQLAGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred HHHhcccccCCCCCeEEEEEechhHH
Confidence 99999999999999999999998664
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-36 Score=363.40 Aligned_cols=368 Identities=20% Similarity=0.240 Sum_probs=290.3
Q ss_pred HHHHHHHH-HCCCCCChHHHHHHHHHHHcC------CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEcc
Q 001261 476 SKIMETIR-KLNYEKPMPIQAQALPVIMSG------RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP 548 (1112)
Q Consensus 476 ~~l~~~l~-~~~~~~pt~iQ~~ai~~il~g------~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~P 548 (1112)
......+. .++| .-||-|..||..+... .|-|+||..|.|||.+++-+++..++. |++|.||||
T Consensus 581 ~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~--------GKQVAvLVP 651 (1139)
T COG1197 581 TEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD--------GKQVAVLVP 651 (1139)
T ss_pred hHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC--------CCeEEEEcc
Confidence 33444443 4666 5699999999998743 699999999999999999999988664 789999999
Q ss_pred chhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHH---HHhcC-CeEEEeCchHHHHHHHhcCCcccccCCceEEEec
Q 001261 549 TRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQIS---ELKRG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (1112)
Q Consensus 549 treLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~---~l~~~-~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViD 624 (1112)
|.-||.|+|+.|+.-+..+++++..+..-.+..++.. .+..| .||||||+-.| . +...|+++++||||
T Consensus 652 TTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL----~----kdv~FkdLGLlIID 723 (1139)
T COG1197 652 TTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL----S----KDVKFKDLGLLIID 723 (1139)
T ss_pred cHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhh----C----CCcEEecCCeEEEe
Confidence 9999999999999999999999999888887777643 44444 69999997644 2 22578899999999
Q ss_pred cchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHH
Q 001261 625 EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRL 704 (1112)
Q Consensus 625 Eah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~l 704 (1112)
|-|+ |+..-+.-++.++.+..++-||||+-|....++...+.+-..|... +.....|..++. +.++ ...-
T Consensus 724 EEqR-----FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TP--P~~R~pV~T~V~--~~d~-~~ir 793 (1139)
T COG1197 724 EEQR-----FGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATP--PEDRLPVKTFVS--EYDD-LLIR 793 (1139)
T ss_pred chhh-----cCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCC--CCCCcceEEEEe--cCCh-HHHH
Confidence 9999 7778888899999999999999998888777887777766544322 222223333322 2222 2222
Q ss_pred HHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhc--CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCC
Q 001261 705 LELLGEWYEKGKILIFVHSQEKCDALFRDLLKH--GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKE 782 (1112)
Q Consensus 705 l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~--g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~ 782 (1112)
-.++.+...+|++...+|.++.++.++..|... ...+.+.||.|+..+-+.+|..|.+|.++|||||.+++.|||||+
T Consensus 794 eAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPn 873 (1139)
T COG1197 794 EAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPN 873 (1139)
T ss_pred HHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCC
Confidence 234445556899999999999999999999886 567899999999999999999999999999999999999999999
Q ss_pred ccEEEEeCCCCC-HhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhHHHHHHHHHHHHhhhhhc
Q 001261 783 LELVINFDAPNH-YEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAKVNQGLEQ 861 (1112)
Q Consensus 783 v~~VI~~d~p~s-~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~~~~~~~~~~~~~~~~ 861 (1112)
++++|+.+.... .++..|--||+||..+.++||+++-+.. .+-..-.+.| ..++
T Consensus 874 ANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k-~lT~~A~kRL-------------------~aI~----- 928 (1139)
T COG1197 874 ANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQK-ALTEDAEKRL-------------------EAIA----- 928 (1139)
T ss_pred CceEEEeccccccHHHHHHhccccCCccceEEEEEeecCcc-ccCHHHHHHH-------------------HHHH-----
Confidence 999999888775 6778888899999999999997775432 2222222222 2221
Q ss_pred ccCCCCCCCCcCCChhHHHHHHHHHHHHHHHcCCCC
Q 001261 862 AHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEE 897 (1112)
Q Consensus 862 ~~~~~~~g~g~~~~~~~~~~r~~~~~~~~~~~g~~~ 897 (1112)
+...-|+||.++.+|+++||+|+++|..|+|+-.
T Consensus 929 --~~~~LGaGf~lA~~DLeIRGaGNlLG~eQSG~I~ 962 (1139)
T COG1197 929 --SFTELGAGFKLAMHDLEIRGAGNLLGEEQSGHIE 962 (1139)
T ss_pred --hhhhcCchHHHHhcchhccccccccCccccCchh
Confidence 1223489999999999999999999999999743
|
|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=347.63 Aligned_cols=304 Identities=21% Similarity=0.236 Sum_probs=215.0
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCCh-----
Q 001261 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGV----- 580 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~----- 580 (1112)
++|++||||||||++|++|++..+.. +.+.+++|++||++|+.|++..+..++.. .+..++|+...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~------~~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~ 71 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS------QKADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKE 71 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh------CCCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhc
Confidence 58999999999999999999987643 23568999999999999999999997542 33444443321
Q ss_pred ------HHHH-HHHh------cCCeEEEeCchHHHHHHHhcCC-cccccC--CceEEEeccchhhhccCChhHHHHHHHh
Q 001261 581 ------AQQI-SELK------RGTEIVVCTPGRMIDILCTSGG-KITNLR--RVTYLVMDEADRMFDMGFEPQITRIVQN 644 (1112)
Q Consensus 581 ------~~~~-~~l~------~~~~IvV~Tp~~L~~~l~~~~~-~~~~l~--~i~~vViDEah~~~~~gf~~~i~~il~~ 644 (1112)
.... .... -...|+|+||+.++..+..+.. ....+. ..++|||||||.++++++.. +..++..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~ 150 (358)
T TIGR01587 72 MGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEV 150 (358)
T ss_pred cCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHH
Confidence 0111 1111 1357999999999887754211 111111 23799999999998765544 5555555
Q ss_pred cC-CCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEe-c-ccchhHHHHHHHHHhhhcCCeEEEEe
Q 001261 645 IR-PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEV-R-PESDRFLRLLELLGEWYEKGKILIFV 721 (1112)
Q Consensus 645 ~~-~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~-~-~~~~k~~~ll~~l~~~~~~~~vLIF~ 721 (1112)
+. .+.|+|+||||+|..+..++..+...+....+...... ....+.+.. . ....+...+..++.....++++||||
T Consensus 151 l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~ 229 (358)
T TIGR01587 151 LKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEER-RFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIV 229 (358)
T ss_pred HHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCcccc-ccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEE
Confidence 54 57899999999998777776665443321111111100 011122211 1 12234455555554444568999999
Q ss_pred CCHHHHHHHHHHHHhcCC--CeeeecCCCCHHHHHHH----HHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCH
Q 001261 722 HSQEKCDALFRDLLKHGY--PCLSLHGAKDQTDREST----ISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHY 795 (1112)
Q Consensus 722 ~s~~~~~~l~~~L~~~g~--~~~~ihg~~~~~~R~~~----~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~ 795 (1112)
+++..|+.++..|.+.+. .+..+||++++.+|..+ +..|++|...|||||+++++||||+ +++||++..| +
T Consensus 230 ~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~ 306 (358)
T TIGR01587 230 NTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--I 306 (358)
T ss_pred CCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--H
Confidence 999999999999988766 49999999999999764 8999999999999999999999995 8899998777 7
Q ss_pred hHHHHHhcccCCCCCc----cEEEEEecCCcc
Q 001261 796 EDYVHRVGRTGRAGRK----GCAITFISEEDA 823 (1112)
Q Consensus 796 ~~y~QriGR~gR~G~~----g~~i~~~~~~d~ 823 (1112)
..|+||+||+||.|+. |.+|+|....+.
T Consensus 307 ~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~ 338 (358)
T TIGR01587 307 DSLIQRLGRLHRYGRKNGENFEVYIITIAPEG 338 (358)
T ss_pred HHHHHHhccccCCCCCCCCCCeEEEEeecCCC
Confidence 8999999999998754 367777665544
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=378.68 Aligned_cols=291 Identities=22% Similarity=0.334 Sum_probs=228.8
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHH
Q 001261 479 METIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHS 558 (1112)
Q Consensus 479 ~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~ 558 (1112)
.+.+.......|+++|..++|.++.|+|++++||||||||+ |++|++..+.. .++++|||+||++||.|++.
T Consensus 68 ~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~-------~g~~vLIL~PTreLa~Qi~~ 139 (1171)
T TIGR01054 68 EEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK-------KGKRCYIILPTTLLVIQVAE 139 (1171)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeCHHHHHHHHHH
Confidence 34444434457999999999999999999999999999997 77777766543 26899999999999999999
Q ss_pred HHHHHhhhcCceEE---EEeCCCChHHH---HHHHhc-CCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhc
Q 001261 559 DIRKFAKVMGVRCV---PVYGGSGVAQQ---ISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD 631 (1112)
Q Consensus 559 ~~~~~~~~~~i~~~---~~~gg~~~~~~---~~~l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~ 631 (1112)
.+..++..+++.+. +++||.+..++ +..+.. +++|||+||++|.+.+... .. ++.+|||||||+|++
T Consensus 140 ~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l-----~~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 140 KISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL-----GP-KFDFIFVDDVDALLK 213 (1171)
T ss_pred HHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh-----cC-CCCEEEEeChHhhhh
Confidence 99999988876654 46788877654 334444 4899999999998877531 11 789999999999998
Q ss_pred -----------cCChhH-HHHHH----------------------HhcCCCCc--EEEEecc-ccHHHHHHHHHhcCCCe
Q 001261 632 -----------MGFEPQ-ITRIV----------------------QNIRPDRQ--TVLFSAT-FPRQVEILARKVLNKPV 674 (1112)
Q Consensus 632 -----------~gf~~~-i~~il----------------------~~~~~~~q--~il~SAT-~~~~~~~l~~~~~~~p~ 674 (1112)
+||... +..++ ..++..+| +++|||| +|..+. ..++.+++
T Consensus 214 ~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~---~~l~r~ll 290 (1171)
T TIGR01054 214 ASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKR---AKLFRELL 290 (1171)
T ss_pred ccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccH---HHHccccc
Confidence 788874 45543 23445555 5779999 565543 23456666
Q ss_pred EEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCH---HHHHHHHHHHHhcCCCeeeecCCCCHH
Q 001261 675 EIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQ---EKCDALFRDLLKHGYPCLSLHGAKDQT 751 (1112)
Q Consensus 675 ~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~---~~~~~l~~~L~~~g~~~~~ihg~~~~~ 751 (1112)
.+.++.......++.+.+..... +...|+.+|... ..++||||++. +.|+.|+..|...|+++..+||+|++
T Consensus 291 ~~~v~~~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l--~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~- 365 (1171)
T TIGR01054 291 GFEVGGGSDTLRNVVDVYVEDED--LKETLLEIVKKL--GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK- 365 (1171)
T ss_pred ceEecCccccccceEEEEEeccc--HHHHHHHHHHHc--CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH-
Confidence 67777666666677776654332 245566666553 35799999999 99999999999999999999999973
Q ss_pred HHHHHHHHhhcCCccEEEe----cCcccccCCCCC-ccEEEEeCCCCC
Q 001261 752 DRESTISDFKSNVCNLLIA----TSVAARGLDVKE-LELVINFDAPNH 794 (1112)
Q Consensus 752 ~R~~~~~~F~~g~~~VLVa----T~v~~~GlDi~~-v~~VI~~d~p~s 794 (1112)
.+++.|++|+++|||| |++++||||||+ |++|||||+|..
T Consensus 366 ---~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 366 ---EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred ---HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCCE
Confidence 6899999999999999 599999999999 899999999974
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=357.23 Aligned_cols=324 Identities=20% Similarity=0.258 Sum_probs=242.1
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+|+ .|+++|..+++.+..|+ |+.+.||+|||++|++|++..... |+.|+||+||+.||.|.+.++..++
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~--------G~~v~VvTpt~~LA~qd~e~~~~l~ 143 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE--------GKGVHLITVNDYLAKRDAEEMGQVY 143 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc--------CCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 565 89999999999998887 999999999999999999866543 7789999999999999999999999
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHH-HHHHHhcC---CcccccCCceEEEeccchhhh-ccC------
Q 001261 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM-IDILCTSG---GKITNLRRVTYLVMDEADRMF-DMG------ 633 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L-~~~l~~~~---~~~~~l~~i~~vViDEah~~~-~~g------ 633 (1112)
..+|+++.+++||.+...+... ..+++|+||||++| .++|..+- .....+..+.++||||||.|+ |..
T Consensus 144 ~~lGl~v~~i~g~~~~~~~r~~-~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tplii 222 (790)
T PRK09200 144 EFLGLTVGLNFSDIDDASEKKA-IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLII 222 (790)
T ss_pred hhcCCeEEEEeCCCCcHHHHHH-hcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceee
Confidence 9999999999999984444333 34699999999999 55554321 111346788999999999874 100
Q ss_pred ---------ChhHHHHHHHhcCCC--------------------------------------------------------
Q 001261 634 ---------FEPQITRIVQNIRPD-------------------------------------------------------- 648 (1112)
Q Consensus 634 ---------f~~~i~~il~~~~~~-------------------------------------------------------- 648 (1112)
+...+..++..+...
T Consensus 223 sg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d 302 (790)
T PRK09200 223 SGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRD 302 (790)
T ss_pred eCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcC
Confidence 111111222222110
Q ss_pred -------------------------------------------------------------CcEEEEeccccHHHHHHHH
Q 001261 649 -------------------------------------------------------------RQTVLFSATFPRQVEILAR 667 (1112)
Q Consensus 649 -------------------------------------------------------------~q~il~SAT~~~~~~~l~~ 667 (1112)
..+.+||+|....-..| .
T Consensus 303 ~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~-~ 381 (790)
T PRK09200 303 VDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEF-F 381 (790)
T ss_pred CcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHH-H
Confidence 01344444433222222 2
Q ss_pred HhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecC
Q 001261 668 KVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHG 746 (1112)
Q Consensus 668 ~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg 746 (1112)
..++-++.......+........ .++.....|+..++..+.... ...++||||+|+..++.|+..|...|+++..+||
T Consensus 382 ~~Y~l~v~~IPt~kp~~r~d~~~-~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~ 460 (790)
T PRK09200 382 EVYNMEVVQIPTNRPIIRIDYPD-KVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNA 460 (790)
T ss_pred HHhCCcEEECCCCCCcccccCCC-eEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecC
Confidence 23333332222222222222221 233455678888888887643 4568999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCccEEEecCcccccCCC---CCcc-----EEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEe
Q 001261 747 AKDQTDRESTISDFKSNVCNLLIATSVAARGLDV---KELE-----LVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFI 818 (1112)
Q Consensus 747 ~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi---~~v~-----~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~ 818 (1112)
.+.+.++..+...+..| .|||||++++||+|| ++|. +||+|++|.+...|+||+|||||.|.+|.|++|+
T Consensus 461 ~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~i 538 (790)
T PRK09200 461 KNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFI 538 (790)
T ss_pred CccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEE
Confidence 99998888887777766 799999999999999 6998 9999999999999999999999999999999999
Q ss_pred cCCccC
Q 001261 819 SEEDAK 824 (1112)
Q Consensus 819 ~~~d~~ 824 (1112)
+..|..
T Consensus 539 s~eD~l 544 (790)
T PRK09200 539 SLEDDL 544 (790)
T ss_pred cchHHH
Confidence 987653
|
|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=353.79 Aligned_cols=301 Identities=17% Similarity=0.160 Sum_probs=222.3
Q ss_pred CCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhh
Q 001261 487 YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKV 566 (1112)
Q Consensus 487 ~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~ 566 (1112)
...|+++|.++++.++.+.++|+++|||+|||+++++.+...+.. ...++||||||++|+.||...+.+|+..
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~-------~~~~vLilvpt~eL~~Q~~~~l~~~~~~ 184 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLEN-------YEGKVLIIVPTTSLVTQMIDDFVDYRLF 184 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhc-------CCCeEEEEECcHHHHHHHHHHHHHhccc
Confidence 458999999999999999999999999999999765533222221 1347999999999999999999998754
Q ss_pred cCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcC
Q 001261 567 MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646 (1112)
Q Consensus 567 ~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~ 646 (1112)
....+..+++|.... .+.+|+|+||++|..... ..+.++++|||||||++.. ..+..++..++
T Consensus 185 ~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~------~~~~~~~~iIvDEaH~~~~----~~~~~il~~~~ 247 (501)
T PHA02558 185 PREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK------EWFDQFGMVIVDECHLFTG----KSLTSIITKLD 247 (501)
T ss_pred cccceeEEecCcccC-------CCCCEEEeeHHHHhhchh------hhccccCEEEEEchhcccc----hhHHHHHHhhh
Confidence 445566677776432 347999999999875431 2467899999999999864 45677777787
Q ss_pred CCCcEEEEeccccHHHH-HHH-HHhcCCCeEEEEcCcccccC------CccEEE---------------------Eeccc
Q 001261 647 PDRQTVLFSATFPRQVE-ILA-RKVLNKPVEIQVGGRSVVNK------DITQLV---------------------EVRPE 697 (1112)
Q Consensus 647 ~~~q~il~SAT~~~~~~-~l~-~~~~~~p~~i~i~~~~~~~~------~i~q~~---------------------~~~~~ 697 (1112)
+.+++++||||++.... .+. ..+++ |+...+........ .+.... .+...
T Consensus 248 ~~~~~lGLTATp~~~~~~~~~~~~~fG-~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~ 326 (501)
T PHA02558 248 NCKFKFGLTGSLRDGKANILQYVGLFG-DIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSH 326 (501)
T ss_pred ccceEEEEeccCCCccccHHHHHHhhC-CceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhcc
Confidence 78899999999975322 111 11222 22222211100000 000000 00111
Q ss_pred chhHHHHHHHHHhhh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEec-Cccc
Q 001261 698 SDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT-SVAA 775 (1112)
Q Consensus 698 ~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT-~v~~ 775 (1112)
..+...+..++.... .+.++||||++.++++.|+..|...|+++..+||+|++.+|..+++.|++|...||||| ++++
T Consensus 327 ~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~ 406 (501)
T PHA02558 327 TKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFS 406 (501)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceec
Confidence 122223333333322 34689999999999999999999999999999999999999999999999999999998 8999
Q ss_pred ccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCcc
Q 001261 776 RGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKG 812 (1112)
Q Consensus 776 ~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g 812 (1112)
+|+|+|++++||++.++.+...|+||+||++|.+..+
T Consensus 407 eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 407 TGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred cccccccccEEEEecCCcchhhhhhhhhccccCCCCC
Confidence 9999999999999999999999999999999987544
|
|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=350.34 Aligned_cols=321 Identities=20% Similarity=0.251 Sum_probs=231.0
Q ss_pred hHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCce
Q 001261 491 MPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVR 570 (1112)
Q Consensus 491 t~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~ 570 (1112)
+|+|.|++..+..++..|+.++||+|||++|++|++.+.+. |+.++||+||++||.|++.++..++..+|+.
T Consensus 70 rpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~--------g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLs 141 (762)
T TIGR03714 70 FPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT--------GKGAMLVTTNDYLAKRDAEEMGPVYEWLGLT 141 (762)
T ss_pred CccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc--------CCceEEeCCCHHHHHHHHHHHHHHHhhcCCc
Confidence 44555555555545557999999999999999998876553 4569999999999999999999999999999
Q ss_pred EEEEeCCCC---hHHHHHHHhcCCeEEEeCchHH-HHHHHhc---CCcccccCCceEEEeccchhhhc-cC---------
Q 001261 571 CVPVYGGSG---VAQQISELKRGTEIVVCTPGRM-IDILCTS---GGKITNLRRVTYLVMDEADRMFD-MG--------- 633 (1112)
Q Consensus 571 ~~~~~gg~~---~~~~~~~l~~~~~IvV~Tp~~L-~~~l~~~---~~~~~~l~~i~~vViDEah~~~~-~g--------- 633 (1112)
+.+++++.. ..........+++|+||||++| .++|..+ ......+..+.++||||||.|+- ..
T Consensus 142 v~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg~ 221 (762)
T TIGR03714 142 VSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGA 221 (762)
T ss_pred EEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeCC
Confidence 998887632 2223344446799999999999 5555332 11123467899999999998742 10
Q ss_pred ------ChhHHHHHHHhcCCC-----------------------------------------------------------
Q 001261 634 ------FEPQITRIVQNIRPD----------------------------------------------------------- 648 (1112)
Q Consensus 634 ------f~~~i~~il~~~~~~----------------------------------------------------------- 648 (1112)
+...+..++..+.++
T Consensus 222 ~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~dY 301 (762)
T TIGR03714 222 PRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDY 301 (762)
T ss_pred CccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCce
Confidence 111111222222111
Q ss_pred ----------------------------------------------------------CcEEEEeccccHHHHHHHHHhc
Q 001261 649 ----------------------------------------------------------RQTVLFSATFPRQVEILARKVL 670 (1112)
Q Consensus 649 ----------------------------------------------------------~q~il~SAT~~~~~~~l~~~~~ 670 (1112)
..+.+||+|.......|. .++
T Consensus 302 iV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~-~iY 380 (762)
T TIGR03714 302 VVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFI-ETY 380 (762)
T ss_pred EEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHH-HHh
Confidence 113444444433333332 233
Q ss_pred CCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCC
Q 001261 671 NKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKD 749 (1112)
Q Consensus 671 ~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~ 749 (1112)
+-++.+.+...+........ ..+.....|+..++..+.... ...++||||+++..++.|+..|...|+++..+||.+.
T Consensus 381 ~l~v~~IPt~kp~~r~d~~d-~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~ 459 (762)
T TIGR03714 381 SLSVVKIPTNKPIIRIDYPD-KIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNA 459 (762)
T ss_pred CCCEEEcCCCCCeeeeeCCC-eEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCCh
Confidence 33333222222222222111 234455678888888887653 4568999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCccEEEecCcccccCCCC---------CccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecC
Q 001261 750 QTDRESTISDFKSNVCNLLIATSVAARGLDVK---------ELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISE 820 (1112)
Q Consensus 750 ~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~---------~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~ 820 (1112)
+.++..+...|+.| .|+|||++++||+||+ ++.+||+|++|....+ +||+|||||.|.+|.+++|++.
T Consensus 460 ~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~ 536 (762)
T TIGR03714 460 AKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSL 536 (762)
T ss_pred HHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEcc
Confidence 99988887777766 7999999999999999 9999999999998776 9999999999999999999998
Q ss_pred CccC
Q 001261 821 EDAK 824 (1112)
Q Consensus 821 ~d~~ 824 (1112)
.|.-
T Consensus 537 eD~l 540 (762)
T TIGR03714 537 EDDL 540 (762)
T ss_pred chhh
Confidence 7654
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. |
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=342.94 Aligned_cols=324 Identities=23% Similarity=0.283 Sum_probs=242.1
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+| ..|+++|..+++.+..|+ |+.++||+|||++|++|++..... |..|+||+||+.||.|.+.++..++
T Consensus 53 lg-~~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~VvTpt~~LA~qdae~~~~l~ 121 (745)
T TIGR00963 53 LG-MRPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAEWMGQVY 121 (745)
T ss_pred hC-CCccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh--------CCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 55 368999999999888776 999999999999999999644432 4569999999999999999999999
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHH-HHHHHhcC---CcccccCCceEEEeccchhhhc-c-------
Q 001261 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM-IDILCTSG---GKITNLRRVTYLVMDEADRMFD-M------- 632 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L-~~~l~~~~---~~~~~l~~i~~vViDEah~~~~-~------- 632 (1112)
..+|+++.+++||.+.......+ .++|+|+||++| .++|..+- .....++.+.++||||+|+|+- .
T Consensus 122 ~~LGLsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLii 199 (745)
T TIGR00963 122 RFLGLSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLII 199 (745)
T ss_pred ccCCCeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhh
Confidence 99999999999999876554443 489999999999 88886541 1123578899999999998752 1
Q ss_pred -C-------ChhHHHHHHHhcCCC--------------------------------------------------------
Q 001261 633 -G-------FEPQITRIVQNIRPD-------------------------------------------------------- 648 (1112)
Q Consensus 633 -g-------f~~~i~~il~~~~~~-------------------------------------------------------- 648 (1112)
| .......|...+..+
T Consensus 200 sg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d 279 (745)
T TIGR00963 200 SGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKD 279 (745)
T ss_pred cCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcC
Confidence 1 000111111111100
Q ss_pred -------------------------------------------------------------CcEEEEeccccHHHHHHHH
Q 001261 649 -------------------------------------------------------------RQTVLFSATFPRQVEILAR 667 (1112)
Q Consensus 649 -------------------------------------------------------------~q~il~SAT~~~~~~~l~~ 667 (1112)
..+.+||+|.......| .
T Consensus 280 ~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~-~ 358 (745)
T TIGR00963 280 VDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEF-E 358 (745)
T ss_pred CcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHH-H
Confidence 11334444443222222 2
Q ss_pred HhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecC
Q 001261 668 KVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHG 746 (1112)
Q Consensus 668 ~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg 746 (1112)
.+++-++.+.....+........ ..+.....|+..++..+..... +.++||||+++..++.|+..|.+.|+++..+||
T Consensus 359 ~iY~l~vv~IPtnkp~~R~d~~d-~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna 437 (745)
T TIGR00963 359 KIYNLEVVVVPTNRPVIRKDLSD-LVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNA 437 (745)
T ss_pred HHhCCCEEEeCCCCCeeeeeCCC-eEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeC
Confidence 23333332222222222111111 2234455688888777755443 459999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCC-------ccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEec
Q 001261 747 AKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKE-------LELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFIS 819 (1112)
Q Consensus 747 ~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~-------v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~ 819 (1112)
. +..|+..+..|..+...|+|||++|+||+||+. ..+||++++|.+...|.|++||+||.|.+|.+++|++
T Consensus 438 ~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls 515 (745)
T TIGR00963 438 K--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLS 515 (745)
T ss_pred C--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEe
Confidence 8 889999999999999999999999999999998 5699999999999999999999999999999999999
Q ss_pred CCccCc
Q 001261 820 EEDAKY 825 (1112)
Q Consensus 820 ~~d~~~ 825 (1112)
..|.-+
T Consensus 516 ~eD~l~ 521 (745)
T TIGR00963 516 LEDNLM 521 (745)
T ss_pred ccHHHH
Confidence 876543
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. |
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-33 Score=307.82 Aligned_cols=322 Identities=23% Similarity=0.319 Sum_probs=236.4
Q ss_pred CCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001261 486 NYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 486 ~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
+...++.+|......++.+ ++|++.|||.|||+++++-|...+... .+ ++|||+||+-|+.|++..|.+++.
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~------~~-kvlfLAPTKPLV~Qh~~~~~~v~~ 83 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWF------GG-KVLFLAPTKPLVLQHAEFCRKVTG 83 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhc------CC-eEEEecCCchHHHHHHHHHHHHhC
Confidence 3457888999888887776 899999999999999999888887764 23 899999999999999999999876
Q ss_pred hcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhc-cCChhHHHHHHHh
Q 001261 566 VMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQN 644 (1112)
Q Consensus 566 ~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~-~gf~~~i~~il~~ 644 (1112)
.-.-.++.++|-....+....+.. ..|+|+||..+.+-|..+ ..++.++.+||+|||||-.. ..+. .+.+....
T Consensus 84 ip~~~i~~ltGev~p~~R~~~w~~-~kVfvaTPQvveNDl~~G---rid~~dv~~lifDEAHRAvGnyAYv-~Va~~y~~ 158 (542)
T COG1111 84 IPEDEIAALTGEVRPEEREELWAK-KKVFVATPQVVENDLKAG---RIDLDDVSLLIFDEAHRAVGNYAYV-FVAKEYLR 158 (542)
T ss_pred CChhheeeecCCCChHHHHHHHhh-CCEEEeccHHHHhHHhcC---ccChHHceEEEechhhhccCcchHH-HHHHHHHH
Confidence 555567777777766666555544 799999999998777653 37899999999999998542 2222 22222333
Q ss_pred cCCCCcEEEEeccccHHHHHH---HHHhcCCCeEEE----------------------E---------------------
Q 001261 645 IRPDRQTVLFSATFPRQVEIL---ARKVLNKPVEIQ----------------------V--------------------- 678 (1112)
Q Consensus 645 ~~~~~q~il~SAT~~~~~~~l---~~~~~~~p~~i~----------------------i--------------------- 678 (1112)
...++.+|++|||+....+.+ +..+.-.-+.+. +
T Consensus 159 ~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~ 238 (542)
T COG1111 159 SAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKP 238 (542)
T ss_pred hccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHH
Confidence 345667999999985443221 111000000000 0
Q ss_pred --------cCcccc-------c-------CC-------------------------------------------------
Q 001261 679 --------GGRSVV-------N-------KD------------------------------------------------- 687 (1112)
Q Consensus 679 --------~~~~~~-------~-------~~------------------------------------------------- 687 (1112)
+..... . ..
T Consensus 239 L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~s 318 (542)
T COG1111 239 LKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGS 318 (542)
T ss_pred HHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccch
Confidence 000000 0 00
Q ss_pred ------------------ccEEEEecccchhHHHHHHHHHhhhc---CCeEEEEeCCHHHHHHHHHHHHhcCCCee-eec
Q 001261 688 ------------------ITQLVEVRPESDRFLRLLELLGEWYE---KGKILIFVHSQEKCDALFRDLLKHGYPCL-SLH 745 (1112)
Q Consensus 688 ------------------i~q~~~~~~~~~k~~~ll~~l~~~~~---~~~vLIF~~s~~~~~~l~~~L~~~g~~~~-~ih 745 (1112)
............|+..+.+++...+. ..++|||++.+.+++.+..+|.+.+..+. .+-
T Consensus 319 k~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFi 398 (542)
T COG1111 319 KAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFI 398 (542)
T ss_pred HHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEe
Confidence 00000011122355556666666552 34899999999999999999999987774 332
Q ss_pred --------CCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEE
Q 001261 746 --------GAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITF 817 (1112)
Q Consensus 746 --------g~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~ 817 (1112)
.||+|.++..+++.|++|.++|||||+|++.|||||.+++||+|++-.|...++||.|||||. +.|.+|+|
T Consensus 399 GQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vL 477 (542)
T COG1111 399 GQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVL 477 (542)
T ss_pred eccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEE
Confidence 479999999999999999999999999999999999999999999999999999999999997 79999999
Q ss_pred ecCC
Q 001261 818 ISEE 821 (1112)
Q Consensus 818 ~~~~ 821 (1112)
++..
T Consensus 478 vt~g 481 (542)
T COG1111 478 VTEG 481 (542)
T ss_pred EecC
Confidence 9987
|
|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=319.14 Aligned_cols=337 Identities=21% Similarity=0.316 Sum_probs=271.6
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEE
Q 001261 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPV-IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (1112)
Q Consensus 468 ~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~-il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl 546 (1112)
...++.+++.+...|+..|+..++|+|.-|+.. ++.|.|++++++|+||||++.-++-+..++. .|.+.|+|
T Consensus 195 ~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~-------~g~KmlfL 267 (830)
T COG1202 195 PVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS-------GGKKMLFL 267 (830)
T ss_pred cccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh-------CCCeEEEE
Confidence 356788999999999999999999999999987 6699999999999999999988887776654 37789999
Q ss_pred ccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH----HHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEE
Q 001261 547 APTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI----SELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLV 622 (1112)
Q Consensus 547 ~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~----~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vV 622 (1112)
||..+||+|-|..|+.-...+|+.+..-+|-+-+...- ......++|||+|++-+-.+|... ..+.+++.||
T Consensus 268 vPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg----~~lgdiGtVV 343 (830)
T COG1202 268 VPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG----KDLGDIGTVV 343 (830)
T ss_pred ehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC----CcccccceEE
Confidence 99999999999999998889999988877765333221 111234799999999986666553 4788999999
Q ss_pred eccchhhhccCChhHHHH---HHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEE-Eecccc
Q 001261 623 MDEADRMFDMGFEPQITR---IVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLV-EVRPES 698 (1112)
Q Consensus 623 iDEah~~~~~gf~~~i~~---il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~-~~~~~~ 698 (1112)
|||+|.+-+...++.+.- -+..+-+..|+|.+|||..+. ..++..+.-.++.+ ..+++ ++..++ ......
T Consensus 344 IDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y--~~RPV---plErHlvf~~~e~ 417 (830)
T COG1202 344 IDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLY--DERPV---PLERHLVFARNES 417 (830)
T ss_pred eeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEee--cCCCC---ChhHeeeeecCch
Confidence 999999877655554444 455566889999999998654 45777777666543 23332 233344 444577
Q ss_pred hhHHHHHHHHHhhh-------cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEec
Q 001261 699 DRFLRLLELLGEWY-------EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT 771 (1112)
Q Consensus 699 ~k~~~ll~~l~~~~-------~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT 771 (1112)
+|+..+..+...-+ -.|++|||++|+..|..|+..|...|+.+.+||+||+..+|..+...|.++.+.++|+|
T Consensus 418 eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTT 497 (830)
T COG1202 418 EKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTT 497 (830)
T ss_pred HHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeeh
Confidence 88877777665433 24799999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCCccEEEE---eCCCC-CHhHHHHHhcccCCCCC--ccEEEEEecCC
Q 001261 772 SVAARGLDVKELELVIN---FDAPN-HYEDYVHRVGRTGRAGR--KGCAITFISEE 821 (1112)
Q Consensus 772 ~v~~~GlDi~~v~~VI~---~d~p~-s~~~y~QriGR~gR~G~--~g~~i~~~~~~ 821 (1112)
-+++.|+|+|.-.+|+. ++.-| ++..|.|++||+||.+. .|.+|+++-+.
T Consensus 498 AAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 498 AALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred hhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 99999999998665542 34444 89999999999999875 58999888764
|
|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-34 Score=355.75 Aligned_cols=299 Identities=25% Similarity=0.357 Sum_probs=214.3
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEE--cc----chhHHHHHHHHHHH-Hhh
Q 001261 493 IQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM--AP----TRELVQQIHSDIRK-FAK 565 (1112)
Q Consensus 493 iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl--~P----treLa~Q~~~~~~~-~~~ 565 (1112)
+..+.+..|..++.+||+|+||||||++ +|.+.... +.+..++|+ -| +++||.|+..++.. ++.
T Consensus 78 ~r~~Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle~-------g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~ 148 (1294)
T PRK11131 78 KKQDILEAIRDHQVVIVAGETGSGKTTQ--LPKICLEL-------GRGVKGLIGHTQPRRLAARTVANRIAEELETELGG 148 (1294)
T ss_pred HHHHHHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHc-------CCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcc
Confidence 3445666677777888889999999984 67443321 123333343 36 45777777776654 222
Q ss_pred hcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccch-hhhccCChhHHHHHHHh
Q 001261 566 VMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD-RMFDMGFEPQITRIVQN 644 (1112)
Q Consensus 566 ~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah-~~~~~gf~~~i~~il~~ 644 (1112)
..|+.+ ... . ....++.|+|||||+|++.+... ..|.++++||||||| ++++++|...+..-+..
T Consensus 149 ~VGY~v----rf~---~---~~s~~t~I~v~TpG~LL~~l~~d----~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~ 214 (1294)
T PRK11131 149 CVGYKV----RFN---D---QVSDNTMVKLMTDGILLAEIQQD----RLLMQYDTIIIDEAHERSLNIDFILGYLKELLP 214 (1294)
T ss_pred eeceee----cCc---c---ccCCCCCEEEEChHHHHHHHhcC----CccccCcEEEecCccccccccchHHHHHHHhhh
Confidence 222221 111 1 12356899999999999998653 358999999999999 79999987653332333
Q ss_pred cCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEeccc------chhHHHHHHHHHhh--hcCCe
Q 001261 645 IRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPE------SDRFLRLLELLGEW--YEKGK 716 (1112)
Q Consensus 645 ~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~------~~k~~~ll~~l~~~--~~~~~ 716 (1112)
.+++.|+|+||||++. ..|+..|.+.|+ +.+.+...+ +.+.+..... .+.+..++..+... ...|.
T Consensus 215 ~rpdlKvILmSATid~--e~fs~~F~~apv-I~V~Gr~~p---Vei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~Gd 288 (1294)
T PRK11131 215 RRPDLKVIITSATIDP--ERFSRHFNNAPI-IEVSGRTYP---VEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGD 288 (1294)
T ss_pred cCCCceEEEeeCCCCH--HHHHHHcCCCCE-EEEcCcccc---ceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCC
Confidence 3578999999999975 467777777775 556555432 3333322211 12333444433322 24578
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCC---eeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCC--
Q 001261 717 ILIFVHSQEKCDALFRDLLKHGYP---CLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDA-- 791 (1112)
Q Consensus 717 vLIF~~s~~~~~~l~~~L~~~g~~---~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~-- 791 (1112)
+||||++..+++.++..|...++. ++.+||+|++.+|..++.. .|..+|||||+++++|||||+|.+||++++
T Consensus 289 ILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k 366 (1294)
T PRK11131 289 ILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTAR 366 (1294)
T ss_pred EEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCcc
Confidence 999999999999999999987765 6789999999999999886 478999999999999999999999999863
Q ss_pred -------------C---CCHhHHHHHhcccCCCCCccEEEEEecCCcc
Q 001261 792 -------------P---NHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823 (1112)
Q Consensus 792 -------------p---~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~ 823 (1112)
| .|.++|+||+|||||. .+|.||.||++.+.
T Consensus 367 ~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~ 413 (1294)
T PRK11131 367 ISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDF 413 (1294)
T ss_pred ccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHH
Confidence 3 4668999999999999 59999999997653
|
|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=347.52 Aligned_cols=324 Identities=23% Similarity=0.322 Sum_probs=240.6
Q ss_pred CCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001261 486 NYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 486 ~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
+...|+++|.+++..++.+ ++|+++|||+|||++++++++..+.. .+.++||||||++|+.||...+..++.
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~-------~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 83 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK-------KGGKVLILAPTKPLVEQHAEFFRKFLN 83 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh-------CCCeEEEEeCcHHHHHHHHHHHHHHhC
Confidence 3457899999999988887 99999999999999999999887742 356899999999999999999999875
Q ss_pred hcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhc
Q 001261 566 VMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI 645 (1112)
Q Consensus 566 ~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~ 645 (1112)
..+..++.++|+...... ..+..+++|+|+||+.|...+... ...+.++++|||||||++........+...+...
T Consensus 84 ~~~~~v~~~~g~~~~~~r-~~~~~~~~iiv~T~~~l~~~l~~~---~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~ 159 (773)
T PRK13766 84 IPEEKIVVFTGEVSPEKR-AELWEKAKVIVATPQVIENDLIAG---RISLEDVSLLIFDEAHRAVGNYAYVYIAERYHED 159 (773)
T ss_pred CCCceEEEEeCCCCHHHH-HHHHhCCCEEEECHHHHHHHHHcC---CCChhhCcEEEEECCccccccccHHHHHHHHHhc
Confidence 545577777887766543 344456899999999997766543 2467889999999999986543333344444444
Q ss_pred CCCCcEEEEeccccHH---HHHHHHHhcCCCeEE--------------------EEcCc---------------------
Q 001261 646 RPDRQTVLFSATFPRQ---VEILARKVLNKPVEI--------------------QVGGR--------------------- 681 (1112)
Q Consensus 646 ~~~~q~il~SAT~~~~---~~~l~~~~~~~p~~i--------------------~i~~~--------------------- 681 (1112)
.+...+++||||+... +..++..+....+.+ .+.-.
T Consensus 160 ~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l 239 (773)
T PRK13766 160 AKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKL 239 (773)
T ss_pred CCCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 5567799999997322 222222111100000 00000
Q ss_pred ---cccc--C-------------CccE-----------------------------------------------------
Q 001261 682 ---SVVN--K-------------DITQ----------------------------------------------------- 690 (1112)
Q Consensus 682 ---~~~~--~-------------~i~q----------------------------------------------------- 690 (1112)
.... . .+.+
T Consensus 240 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~ 319 (773)
T PRK13766 240 KELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGG 319 (773)
T ss_pred HHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCC
Confidence 0000 0 0000
Q ss_pred -------------------EEEecccchhHHHHHHHHHhhh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCC-
Q 001261 691 -------------------LVEVRPESDRFLRLLELLGEWY---EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGA- 747 (1112)
Q Consensus 691 -------------------~~~~~~~~~k~~~ll~~l~~~~---~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~- 747 (1112)
...+.....|+..|..+|.... ..+++||||++...|+.|+..|...|+.+..+||.
T Consensus 320 ~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~ 399 (773)
T PRK13766 320 SKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQA 399 (773)
T ss_pred cHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccc
Confidence 0000112345566666665543 45799999999999999999999999999999986
Q ss_pred -------CCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecC
Q 001261 748 -------KDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISE 820 (1112)
Q Consensus 748 -------~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~ 820 (1112)
|++.+|..++..|++|.++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.| .|.+|+|++.
T Consensus 400 ~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~~l~~~ 478 (773)
T PRK13766 400 SKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVVVLIAK 478 (773)
T ss_pred cccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC-CCEEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999987 5889988876
Q ss_pred Cc
Q 001261 821 ED 822 (1112)
Q Consensus 821 ~d 822 (1112)
..
T Consensus 479 ~t 480 (773)
T PRK13766 479 GT 480 (773)
T ss_pred CC
Confidence 53
|
|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=313.61 Aligned_cols=292 Identities=19% Similarity=0.220 Sum_probs=204.8
Q ss_pred HHHHHHHHHHcCCC--EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhc---
Q 001261 493 IQAQALPVIMSGRD--CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM--- 567 (1112)
Q Consensus 493 iQ~~ai~~il~g~d--vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~--- 567 (1112)
+|.++++.+..+.+ +++++|||||||++|++|++.. +..+||++|+++|+.|+++.+..++..+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~-----------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~ 69 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG-----------ENDTIALYPTNALIEDQTEAIKEFVDVFKPE 69 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc-----------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCC
Confidence 59999999999875 7889999999999999999842 3467999999999999999999988644
Q ss_pred -CceEEEEeCCCChH--HHH-----------------HH-HhcCCeEEEeCchHHHHHHHhcC---C--cccccCCceEE
Q 001261 568 -GVRCVPVYGGSGVA--QQI-----------------SE-LKRGTEIVVCTPGRMIDILCTSG---G--KITNLRRVTYL 621 (1112)
Q Consensus 568 -~i~~~~~~gg~~~~--~~~-----------------~~-l~~~~~IvV~Tp~~L~~~l~~~~---~--~~~~l~~i~~v 621 (1112)
++.+..+.|.+... ... .. ....+.|+++||+.|..++.... . ....+..+++|
T Consensus 70 ~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~i 149 (357)
T TIGR03158 70 RDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTV 149 (357)
T ss_pred CCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEE
Confidence 45555555532111 000 00 12357889999998866543211 0 11125789999
Q ss_pred EeccchhhhccC-----ChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHh--cCCCeEEEEcCcccc----------
Q 001261 622 VMDEADRMFDMG-----FEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKV--LNKPVEIQVGGRSVV---------- 684 (1112)
Q Consensus 622 ViDEah~~~~~g-----f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~--~~~p~~i~i~~~~~~---------- 684 (1112)
||||+|.+...+ |...+..++.......++|++|||+++.+...+... ++.|+.+.. +....
T Consensus 150 V~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~-g~~~~~~~~~~~~~~ 228 (357)
T TIGR03158 150 IFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPID-GEKYQFPDNPELEAD 228 (357)
T ss_pred EEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeec-CcccccCCChhhhcc
Confidence 999999865432 222444455544455799999999999877776665 555553322 22000
Q ss_pred ---------cCCccEEEEecccchhH---HHHHHHHHhhh---cCCeEEEEeCCHHHHHHHHHHHHhcC--CCeeeecCC
Q 001261 685 ---------NKDITQLVEVRPESDRF---LRLLELLGEWY---EKGKILIFVHSQEKCDALFRDLLKHG--YPCLSLHGA 747 (1112)
Q Consensus 685 ---------~~~i~q~~~~~~~~~k~---~~ll~~l~~~~---~~~~vLIF~~s~~~~~~l~~~L~~~g--~~~~~ihg~ 747 (1112)
...+.+.+.. ....+. ..++..+.... ..+++||||+++..++.++..|...+ +.+..+||.
T Consensus 229 ~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~ 307 (357)
T TIGR03158 229 NKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGF 307 (357)
T ss_pred ccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecC
Confidence 0133333332 222222 23334333322 45699999999999999999999864 578899999
Q ss_pred CCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccC
Q 001261 748 KDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTG 806 (1112)
Q Consensus 748 ~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~g 806 (1112)
+++..|..+ +...|||||+++++||||+.+ +|| ++ |.+...|+||+||+|
T Consensus 308 ~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 308 APKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred CCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 999998765 378899999999999999987 566 55 889999999999997
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-33 Score=297.97 Aligned_cols=334 Identities=22% Similarity=0.368 Sum_probs=251.3
Q ss_pred HHHHHHHH-CCCCCC-hHHHHHHHHHHHcC-CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHH
Q 001261 477 KIMETIRK-LNYEKP-MPIQAQALPVIMSG-RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553 (1112)
Q Consensus 477 ~l~~~l~~-~~~~~p-t~iQ~~ai~~il~g-~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa 553 (1112)
.+..+|++ +|+.+. ++.|.+|+..+..+ +||.+++|||+||+++|.||.|.+ +.++||+.|..+|+
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-----------~gITIV~SPLiALI 74 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-----------GGITIVISPLIALI 74 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-----------CCeEEEehHHHHHH
Confidence 34456654 676654 79999999998865 699999999999999999999965 33889999999998
Q ss_pred HHHHHHHHHHhhhcCceEEEEeCCCChHHH---HHHH---hcCCeEEEeCchHH-----HHHHHhcCCcccccCCceEEE
Q 001261 554 QQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ---ISEL---KRGTEIVVCTPGRM-----IDILCTSGGKITNLRRVTYLV 622 (1112)
Q Consensus 554 ~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~---~~~l---~~~~~IvV~Tp~~L-----~~~l~~~~~~~~~l~~i~~vV 622 (1112)
......+.++ .+.+..+....+..+. +..| +....|++.||+.- .++|.. +.+-+-+.|||
T Consensus 75 kDQiDHL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~----L~~r~~L~Y~v 146 (641)
T KOG0352|consen 75 KDQIDHLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG----LANRDVLRYIV 146 (641)
T ss_pred HHHHHHHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH----HhhhceeeeEE
Confidence 8666665553 4555555544443332 2333 34578999999864 333332 12334578999
Q ss_pred eccchhhhccC--ChhHHHHH--HHhcCCCCcEEEEeccccHHHHHH--HHHhcCCCeEEEEcCcccccCCccEEEEec-
Q 001261 623 MDEADRMFDMG--FEPQITRI--VQNIRPDRQTVLFSATFPRQVEIL--ARKVLNKPVEIQVGGRSVVNKDITQLVEVR- 695 (1112)
Q Consensus 623 iDEah~~~~~g--f~~~i~~i--l~~~~~~~q~il~SAT~~~~~~~l--~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~- 695 (1112)
|||||...+|| |.+.+..+ +...-++...|.+|||.++.+..- ....+.+|+-+.-. +....++..-+.+.
T Consensus 147 VDEAHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkT--P~FR~NLFYD~~~K~ 224 (641)
T KOG0352|consen 147 VDEAHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKT--PTFRDNLFYDNHMKS 224 (641)
T ss_pred echhhhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccC--cchhhhhhHHHHHHH
Confidence 99999999998 88888776 334446778999999999988654 34456788754422 11222221111100
Q ss_pred ccchhHHHHHHHHHhhhc------------CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcC
Q 001261 696 PESDRFLRLLELLGEWYE------------KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN 763 (1112)
Q Consensus 696 ~~~~k~~~ll~~l~~~~~------------~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g 763 (1112)
.-.+-+..|.++....+. .|--||||.|++.|+.++-.|...|+++..||.|+...+|..+-+.|.++
T Consensus 225 ~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~ 304 (641)
T KOG0352|consen 225 FITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNN 304 (641)
T ss_pred HhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcC
Confidence 011223333333322221 24679999999999999999999999999999999999999999999999
Q ss_pred CccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHH
Q 001261 764 VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVK 831 (1112)
Q Consensus 764 ~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~ 831 (1112)
++.||+||..+++|+|-|+|.+|||+++|.+++-|.|-.||+||.|...+|.++|+..|...+..|+.
T Consensus 305 ~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~ 372 (641)
T KOG0352|consen 305 EIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVS 372 (641)
T ss_pred CCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999998887776654
|
|
| >KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-33 Score=341.10 Aligned_cols=330 Identities=22% Similarity=0.352 Sum_probs=270.2
Q ss_pred HHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH
Q 001261 483 RKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 483 ~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~ 562 (1112)
..+|+...+|-|.++|..++.|+|+++..|||.||+++|.||++-. ++.+|||.|..+|... .+..
T Consensus 258 ~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~-----------~gitvVISPL~SLm~D---Qv~~ 323 (941)
T KOG0351|consen 258 EVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL-----------GGVTVVISPLISLMQD---QVTH 323 (941)
T ss_pred HHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc-----------CCceEEeccHHHHHHH---HHHh
Confidence 4699999999999999999999999999999999999999999843 4589999999999774 4455
Q ss_pred HhhhcCceEEEEeCCCChHHHH---HHHhcC---CeEEEeCchHHHHHHHhcCCcccccCC---ceEEEeccchhhhccC
Q 001261 563 FAKVMGVRCVPVYGGSGVAQQI---SELKRG---TEIVVCTPGRMIDILCTSGGKITNLRR---VTYLVMDEADRMFDMG 633 (1112)
Q Consensus 563 ~~~~~~i~~~~~~gg~~~~~~~---~~l~~~---~~IvV~Tp~~L~~~l~~~~~~~~~l~~---i~~vViDEah~~~~~g 633 (1112)
+ ...+|...++.++....++. ..+..+ +.|++.||+.+...-... .....|.. +.++||||||+...||
T Consensus 324 L-~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~-~~~~~L~~~~~lal~vIDEAHCVSqWg 401 (941)
T KOG0351|consen 324 L-SKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLL-ESLADLYARGLLALFVIDEAHCVSQWG 401 (941)
T ss_pred h-hhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchh-hHHHhccCCCeeEEEEecHHHHhhhhc
Confidence 4 34689999999998887553 344443 699999999874321110 11234555 8999999999999998
Q ss_pred --ChhHHHHHHHhc--CCCCcEEEEeccccHHHHHHHHHhcC--CCeEEEEcCcccccCCccEEEEecccchhHHHHHHH
Q 001261 634 --FEPQITRIVQNI--RPDRQTVLFSATFPRQVEILARKVLN--KPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLEL 707 (1112)
Q Consensus 634 --f~~~i~~il~~~--~~~~q~il~SAT~~~~~~~l~~~~~~--~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~ 707 (1112)
|.+.+..+.... .+...+|.+|||.+..+..-+...++ +|. +...++...++...|...........++..
T Consensus 402 HdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~---~~~~sfnR~NL~yeV~~k~~~~~~~~~~~~ 478 (941)
T KOG0351|consen 402 HDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPE---LFKSSFNRPNLKYEVSPKTDKDALLDILEE 478 (941)
T ss_pred ccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcc---eecccCCCCCceEEEEeccCccchHHHHHH
Confidence 888888764433 34578999999999888766666554 454 223556666776655554444556667777
Q ss_pred HHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEE
Q 001261 708 LGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVI 787 (1112)
Q Consensus 708 l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI 787 (1112)
+..+.+.+.+||||.++.+|+.+...|...|+.+..||+||+..+|..+-..|..++++|+|||=++++|||.|+|..||
T Consensus 479 ~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~Vi 558 (941)
T KOG0351|consen 479 SKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVI 558 (941)
T ss_pred hhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEE
Confidence 77777888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHH
Q 001261 788 NFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVK 831 (1112)
Q Consensus 788 ~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~ 831 (1112)
||.+|.+++.|+|-+|||||.|....|++|+...|...+..++.
T Consensus 559 H~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~ 602 (941)
T KOG0351|consen 559 HYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLT 602 (941)
T ss_pred ECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHH
Confidence 99999999999999999999999999999999887655554443
|
|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=336.74 Aligned_cols=332 Identities=23% Similarity=0.273 Sum_probs=252.5
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHHHHHHHH-cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchh
Q 001261 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIM-SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRE 551 (1112)
Q Consensus 473 ~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il-~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptre 551 (1112)
.++..+...+...++..++|.|+.++...+ .+.|+|+++|||||||+.+++.|++.+.+. +.++|+|||+++
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~-------~~k~vYivPlkA 87 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG-------GGKVVYIVPLKA 87 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-------CCcEEEEeChHH
Confidence 467778888888888888888888887655 569999999999999999999999998863 568999999999
Q ss_pred HHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhc
Q 001261 552 LVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD 631 (1112)
Q Consensus 552 La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~ 631 (1112)
||.+++.+|+ .+..+|+++...+|+..... ....+++|||+||+.+-.++.+.+. .+..+++|||||+|.+.+
T Consensus 88 La~Ek~~~~~-~~~~~GirV~~~TgD~~~~~---~~l~~~~ViVtT~EK~Dsl~R~~~~---~~~~V~lvViDEiH~l~d 160 (766)
T COG1204 88 LAEEKYEEFS-RLEELGIRVGISTGDYDLDD---ERLARYDVIVTTPEKLDSLTRKRPS---WIEEVDLVVIDEIHLLGD 160 (766)
T ss_pred HHHHHHHHhh-hHHhcCCEEEEecCCcccch---hhhccCCEEEEchHHhhHhhhcCcc---hhhcccEEEEeeeeecCC
Confidence 9999999999 55678999999999986443 1224599999999999777765442 567899999999999888
Q ss_pred cCChhHHHHHHHhcC---CCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCccc-ccCCccEEEEecccch------hH
Q 001261 632 MGFEPQITRIVQNIR---PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSV-VNKDITQLVEVRPESD------RF 701 (1112)
Q Consensus 632 ~gf~~~i~~il~~~~---~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~-~~~~i~q~~~~~~~~~------k~ 701 (1112)
...++.+..|+..++ ...|+|++|||+|+. ..++.++-.+++.......+. ......+.+....... ..
T Consensus 161 ~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN~-~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~ 239 (766)
T COG1204 161 RTRGPVLESIVARMRRLNELIRIVGLSATLPNA-EEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLID 239 (766)
T ss_pred cccCceehhHHHHHHhhCcceEEEEEeeecCCH-HHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccch
Confidence 767777777766554 347999999999864 456666655554211111111 1112223333322112 22
Q ss_pred HHHHHHHHh-hhcCCeEEEEeCCHHHHHHHHHHHHhc-------------------------------------CCCeee
Q 001261 702 LRLLELLGE-WYEKGKILIFVHSQEKCDALFRDLLKH-------------------------------------GYPCLS 743 (1112)
Q Consensus 702 ~~ll~~l~~-~~~~~~vLIF~~s~~~~~~l~~~L~~~-------------------------------------g~~~~~ 743 (1112)
..++.++.. ...++++||||+++..+...+..|... ...+.+
T Consensus 240 ~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~Gvaf 319 (766)
T COG1204 240 NLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAF 319 (766)
T ss_pred HHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccc
Confidence 333333333 335679999999999999999888731 124678
Q ss_pred ecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEE----EeC-----CCCCHhHHHHHhcccCCCCC--cc
Q 001261 744 LHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVI----NFD-----APNHYEDYVHRVGRTGRAGR--KG 812 (1112)
Q Consensus 744 ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI----~~d-----~p~s~~~y~QriGR~gR~G~--~g 812 (1112)
+|++|+..+|..+...|+.|.++|||||+.++.|+|+|.-.+|| .|+ .+.+..+|+|++|||||.|- .|
T Consensus 320 HhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G 399 (766)
T COG1204 320 HHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYG 399 (766)
T ss_pred cccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCC
Confidence 99999999999999999999999999999999999999988887 377 45678999999999999875 46
Q ss_pred EEEEEec
Q 001261 813 CAITFIS 819 (1112)
Q Consensus 813 ~~i~~~~ 819 (1112)
.++++.+
T Consensus 400 ~~~i~~~ 406 (766)
T COG1204 400 EAIILAT 406 (766)
T ss_pred cEEEEec
Confidence 6666663
|
|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-33 Score=348.85 Aligned_cols=303 Identities=24% Similarity=0.292 Sum_probs=218.8
Q ss_pred HHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEe
Q 001261 496 QALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVY 575 (1112)
Q Consensus 496 ~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~ 575 (1112)
+.+..|..++.+||+|+||||||++ +|.+..-.. .+....+++.-|.|..|..+.. .++..+|..+...+
T Consensus 74 ~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle~~-----~~~~~~I~~tQPRRlAA~svA~---RvA~elg~~lG~~V 143 (1283)
T TIGR01967 74 DIAEAIAENQVVIIAGETGSGKTTQ--LPKICLELG-----RGSHGLIGHTQPRRLAARTVAQ---RIAEELGTPLGEKV 143 (1283)
T ss_pred HHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHHcC-----CCCCceEecCCccHHHHHHHHH---HHHHHhCCCcceEE
Confidence 5556666777888999999999984 454432111 1112234445588877775544 44445667766677
Q ss_pred CCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccch-hhhccCChhHHHHHHHhcCCCCcEEEE
Q 001261 576 GGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD-RMFDMGFEPQITRIVQNIRPDRQTVLF 654 (1112)
Q Consensus 576 gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah-~~~~~gf~~~i~~il~~~~~~~q~il~ 654 (1112)
|+....+.. ....+.|+|+|+|+|+..+... ..|..+++||||||| ++++++|...+..-+...+++.|+|+|
T Consensus 144 GY~vR~~~~--~s~~T~I~~~TdGiLLr~l~~d----~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKlIlm 217 (1283)
T TIGR01967 144 GYKVRFHDQ--VSSNTLVKLMTDGILLAETQQD----RFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIIIT 217 (1283)
T ss_pred eeEEcCCcc--cCCCceeeeccccHHHHHhhhC----cccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeEEEE
Confidence 764333221 2356899999999999988653 358899999999999 799999887643333445678999999
Q ss_pred eccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEeccc------chhHHHHHHHHHhhh--cCCeEEEEeCCHHH
Q 001261 655 SATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPE------SDRFLRLLELLGEWY--EKGKILIFVHSQEK 726 (1112)
Q Consensus 655 SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~------~~k~~~ll~~l~~~~--~~~~vLIF~~s~~~ 726 (1112)
|||++. ..|+..|.+.|+ +.+.+...+ +...+..... .++...++..+.... ..|.+||||++..+
T Consensus 218 SATld~--~~fa~~F~~apv-I~V~Gr~~P---Vev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~E 291 (1283)
T TIGR01967 218 SATIDP--ERFSRHFNNAPI-IEVSGRTYP---VEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGERE 291 (1283)
T ss_pred eCCcCH--HHHHHHhcCCCE-EEECCCccc---ceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHH
Confidence 999964 567777766675 555554433 2222221111 123344444443322 35899999999999
Q ss_pred HHHHHHHHHhcC---CCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCC-----------
Q 001261 727 CDALFRDLLKHG---YPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAP----------- 792 (1112)
Q Consensus 727 ~~~l~~~L~~~g---~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p----------- 792 (1112)
++.++..|...+ +.+..+||+|++.+|..++..+ +..+|||||+++++|||||+|.+||+++++
T Consensus 292 I~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~ 369 (1283)
T TIGR01967 292 IRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKV 369 (1283)
T ss_pred HHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCc
Confidence 999999998764 4588999999999999997654 347999999999999999999999999853
Q ss_pred -------CCHhHHHHHhcccCCCCCccEEEEEecCCcc
Q 001261 793 -------NHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823 (1112)
Q Consensus 793 -------~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~ 823 (1112)
.|.+.|+||+||+||.| .|.||.||++.+.
T Consensus 370 ~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~ 406 (1283)
T TIGR01967 370 QRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDF 406 (1283)
T ss_pred cccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHH
Confidence 36689999999999998 9999999997653
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-31 Score=328.24 Aligned_cols=337 Identities=21% Similarity=0.333 Sum_probs=261.8
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHH
Q 001261 474 LTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553 (1112)
Q Consensus 474 L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa 553 (1112)
....+...|.+.|+..|+++|.+|+..+.+|+++||+.+||||||.+|++||+.++...+. -++|+|.||++||
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~------a~AL~lYPtnALa 128 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPS------ARALLLYPTNALA 128 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcC------ccEEEEechhhhH
Confidence 3344577888899999999999999999999999999999999999999999999988642 3789999999999
Q ss_pred HHHHHHHHHHhhhcC--ceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHh-cCCcccccCCceEEEeccchhhh
Q 001261 554 QQIHSDIRKFAKVMG--VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCT-SGGKITNLRRVTYLVMDEADRMF 630 (1112)
Q Consensus 554 ~Q~~~~~~~~~~~~~--i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~-~~~~~~~l~~i~~vViDEah~~~ 630 (1112)
+.+.+.+.++...++ +.+....|.+...+....+...++||++||.+|..++.. .......+.++.||||||+|..-
T Consensus 129 ~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYr 208 (851)
T COG1205 129 NDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYR 208 (851)
T ss_pred hhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceecc
Confidence 999999999999887 666666676666665566777899999999999774443 33444557889999999999532
Q ss_pred ccCChhHHHHHH-------HhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecc-------
Q 001261 631 DMGFEPQITRIV-------QNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRP------- 696 (1112)
Q Consensus 631 ~~gf~~~i~~il-------~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~------- 696 (1112)
-.|+..+..++ ...+...|+|++|||+.+. ..++..+.+....+.+.....+....... ...+
T Consensus 209 -Gv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~~~g~~~~~~~~~-~~~p~~~~~~~ 285 (851)
T COG1205 209 -GVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVDEDGSPRGLRYFV-RREPPIRELAE 285 (851)
T ss_pred -ccchhHHHHHHHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeeccCCCCCCCceEEE-EeCCcchhhhh
Confidence 12444444333 3334578999999998654 44777777777665454444433333222 2222
Q ss_pred --cchhHHHHHHHHHhhhc-CCeEEEEeCCHHHHHHHH----HHHHhcC----CCeeeecCCCCHHHHHHHHHHhhcCCc
Q 001261 697 --ESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALF----RDLLKHG----YPCLSLHGAKDQTDRESTISDFKSNVC 765 (1112)
Q Consensus 697 --~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~----~~L~~~g----~~~~~ihg~~~~~~R~~~~~~F~~g~~ 765 (1112)
.......+..++..... +-++|+||.+...++.+. ..+...+ ..+..++|+|...+|..+...|+.|+.
T Consensus 286 ~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~ 365 (851)
T COG1205 286 SIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGEL 365 (851)
T ss_pred hcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCc
Confidence 11333344444443333 349999999999999987 4444445 678899999999999999999999999
Q ss_pred cEEEecCcccccCCCCCccEEEEeCCCC-CHhHHHHHhcccCCCCCccEEEEEec
Q 001261 766 NLLIATSVAARGLDVKELELVINFDAPN-HYEDYVHRVGRTGRAGRKGCAITFIS 819 (1112)
Q Consensus 766 ~VLVaT~v~~~GlDi~~v~~VI~~d~p~-s~~~y~QriGR~gR~G~~g~~i~~~~ 819 (1112)
.++++|+.++-||||..+..||+++.|. +...|+||+||+||.++.+..+..+.
T Consensus 366 ~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 366 LGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred cEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeC
Confidence 9999999999999999999999999999 89999999999999997666665554
|
|
| >KOG0354 consensus DEAD-box like helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.7e-31 Score=311.19 Aligned_cols=324 Identities=23% Similarity=0.281 Sum_probs=227.3
Q ss_pred CCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001261 486 NYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 486 ~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
....++.+|.+.+...| |+++||++|||+|||++++..|++|+...+ ..++||++||+-|+.|....+..++.
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p------~~KiVF~aP~~pLv~QQ~a~~~~~~~ 131 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP------KGKVVFLAPTRPLVNQQIACFSIYLI 131 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC------cceEEEeeCCchHHHHHHHHHhhccC
Confidence 34578999999999999 999999999999999999999999988764 36899999999999999877777654
Q ss_pred hcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHH-HHHHh
Q 001261 566 VMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQIT-RIVQN 644 (1112)
Q Consensus 566 ~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~-~il~~ 644 (1112)
. ..+....||.....-...+-...+|+|+||..|.+.|..... ..|+.+++|||||||+-...--...+. ..+..
T Consensus 132 ~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~--~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~ 207 (746)
T KOG0354|consen 132 P--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLH--DELSDFSLIVFDECHRTSKNHPYNNIMREYLDL 207 (746)
T ss_pred c--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccc--cccceEEEEEEcccccccccccHHHHHHHHHHh
Confidence 4 455566666333222234455689999999999888865432 237889999999999864332233333 44443
Q ss_pred cCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEE----------------------------------------------
Q 001261 645 IRPDRQTVLFSATFPRQVEILARKVLNKPVEIQV---------------------------------------------- 678 (1112)
Q Consensus 645 ~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i---------------------------------------------- 678 (1112)
-....|+|++|||+...+.....-+.+-.+.+.+
T Consensus 208 k~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~ 287 (746)
T KOG0354|consen 208 KNQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQ 287 (746)
T ss_pred hhccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHH
Confidence 3444499999999864433221111000000000
Q ss_pred ---------------------cCcccccCCccEE----------------------------------------------
Q 001261 679 ---------------------GGRSVVNKDITQL---------------------------------------------- 691 (1112)
Q Consensus 679 ---------------------~~~~~~~~~i~q~---------------------------------------------- 691 (1112)
.........-.+.
T Consensus 288 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~ 367 (746)
T KOG0354|consen 288 EEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLE 367 (746)
T ss_pred hcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHH
Confidence 0000000000000
Q ss_pred ------------------EEec--ccchhHHHHHHHHHhhhc---CCeEEEEeCCHHHHHHHHHHHHhc---CCCeeeec
Q 001261 692 ------------------VEVR--PESDRFLRLLELLGEWYE---KGKILIFVHSQEKCDALFRDLLKH---GYPCLSLH 745 (1112)
Q Consensus 692 ------------------~~~~--~~~~k~~~ll~~l~~~~~---~~~vLIF~~s~~~~~~l~~~L~~~---g~~~~~ih 745 (1112)
+... ....|+..|..+|...+. ..++||||.++..|..|..+|... |+....+-
T Consensus 368 ~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fi 447 (746)
T KOG0354|consen 368 LEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFI 447 (746)
T ss_pred hcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceee
Confidence 0000 012234444445544332 348999999999999999999832 33333333
Q ss_pred --------CCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEE
Q 001261 746 --------GAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITF 817 (1112)
Q Consensus 746 --------g~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~ 817 (1112)
.+|++.++..+++.|++|.++|||||+|++.||||+.|++||-||+..++..++||.|| ||+- .|.|+++
T Consensus 448 Gq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa~-ns~~vll 525 (746)
T KOG0354|consen 448 GQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRAR-NSKCVLL 525 (746)
T ss_pred eccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-cccc-CCeEEEE
Confidence 47999999999999999999999999999999999999999999999999999999999 9984 7899988
Q ss_pred ecCCc
Q 001261 818 ISEED 822 (1112)
Q Consensus 818 ~~~~d 822 (1112)
++...
T Consensus 526 ~t~~~ 530 (746)
T KOG0354|consen 526 TTGSE 530 (746)
T ss_pred Ecchh
Confidence 88443
|
|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-30 Score=310.31 Aligned_cols=319 Identities=17% Similarity=0.193 Sum_probs=214.4
Q ss_pred CCChHHHHHHHHHHHc-C--CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 488 EKPMPIQAQALPVIMS-G--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~-g--~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
..|+|+|.+++..++. | +..|+++|||+|||++.+..+... +..+|||||+..|+.||..+|.+|+
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l-----------~k~tLILvps~~Lv~QW~~ef~~~~ 322 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV-----------KKSCLVLCTSAVSVEQWKQQFKMWS 322 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh-----------CCCEEEEeCcHHHHHHHHHHHHHhc
Confidence 3688999999999884 3 478999999999999877655432 2358999999999999999999986
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCC-----cccccCCceEEEeccchhhhccCChhHHH
Q 001261 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGG-----KITNLRRVTYLVMDEADRMFDMGFEPQIT 639 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~-----~~~~l~~i~~vViDEah~~~~~gf~~~i~ 639 (1112)
......+..++|+... .+.....|+|+|+..+......... ..+.-..+++||+||||++.. ..+.
T Consensus 323 ~l~~~~I~~~tg~~k~-----~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~~fr 393 (732)
T TIGR00603 323 TIDDSQICRFTSDAKE-----RFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----AMFR 393 (732)
T ss_pred CCCCceEEEEecCccc-----ccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----HHHH
Confidence 5434455555554321 1112368999999877432111000 011224688999999999753 4555
Q ss_pred HHHHhcCCCCcEEEEeccccHHHH--HHHHHhcCCCeEEEEcCcccccC----CccEEEEe-------------------
Q 001261 640 RIVQNIRPDRQTVLFSATFPRQVE--ILARKVLNKPVEIQVGGRSVVNK----DITQLVEV------------------- 694 (1112)
Q Consensus 640 ~il~~~~~~~q~il~SAT~~~~~~--~l~~~~~~~p~~i~i~~~~~~~~----~i~q~~~~------------------- 694 (1112)
.++..+. ....|+||||+...-. ..+..+++ |..+...-...... .+...-+.
T Consensus 394 ~il~~l~-a~~RLGLTATP~ReD~~~~~L~~LiG-P~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k 471 (732)
T TIGR00603 394 RVLTIVQ-AHCKLGLTATLVREDDKITDLNFLIG-PKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKR 471 (732)
T ss_pred HHHHhcC-cCcEEEEeecCcccCCchhhhhhhcC-CeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhh
Confidence 6666663 3457999999864321 11222222 32222211111000 00000000
Q ss_pred ----cccchhHHHHHHHHHhhh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcC-CccEE
Q 001261 695 ----RPESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN-VCNLL 768 (1112)
Q Consensus 695 ----~~~~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g-~~~VL 768 (1112)
.....|+..+..++.... .+.++||||.+...+..++..| .+..|||.+++.+|..+++.|++| .+++|
T Consensus 472 ~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L-----~~~~I~G~ts~~ER~~il~~Fr~~~~i~vL 546 (732)
T TIGR00603 472 MLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL-----GKPFIYGPTSQQERMQILQNFQHNPKVNTI 546 (732)
T ss_pred hHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc-----CCceEECCCCHHHHHHHHHHHHhCCCccEE
Confidence 011223333333443321 4569999999999999998877 356799999999999999999865 78999
Q ss_pred EecCcccccCCCCCccEEEEeCCCC-CHhHHHHHhcccCCCCCccEE-------EEEecCCcc--CchHHHHHHH
Q 001261 769 IATSVAARGLDVKELELVINFDAPN-HYEDYVHRVGRTGRAGRKGCA-------ITFISEEDA--KYSPDLVKAL 833 (1112)
Q Consensus 769 VaT~v~~~GlDi~~v~~VI~~d~p~-s~~~y~QriGR~gR~G~~g~~-------i~~~~~~d~--~~~~~i~~~l 833 (1112)
|+|+++.+|||+|++++||+++.|. |...|+||+||++|.+..|.+ |+|+++... .++..-..+|
T Consensus 547 v~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl 621 (732)
T TIGR00603 547 FLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFL 621 (732)
T ss_pred EEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHHH
Confidence 9999999999999999999999984 999999999999998866654 788886533 3333334444
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-30 Score=304.34 Aligned_cols=363 Identities=23% Similarity=0.284 Sum_probs=260.4
Q ss_pred HCCCCCChHHHHHHHHHHH-cCCCEEEEcCCCChHHHHHHHHHHHHHhcC--CCCCCCCCCcEEEEccchhHHHHHHHHH
Q 001261 484 KLNYEKPMPIQAQALPVIM-SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQ--PPVAAGDGPVGLIMAPTRELVQQIHSDI 560 (1112)
Q Consensus 484 ~~~~~~pt~iQ~~ai~~il-~g~dvii~a~TGsGKT~~~llp~l~~l~~~--~~~~~~~~~~~LIl~PtreLa~Q~~~~~ 560 (1112)
-++|..+..+|..++|.+. ++.++|||||||||||..|+|.||+.|..+ .-....++-++++|+|+++||..++..|
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~ 184 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKF 184 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHH
Confidence 4778888999999999988 567999999999999999999999998852 1122335788999999999999999999
Q ss_pred HHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHH
Q 001261 561 RKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITR 640 (1112)
Q Consensus 561 ~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~ 640 (1112)
.+-+..+|+.|.-++|.+.....- + ..|+|||+||+.+--.-....+....+..+.+|||||+|.+-+ ..++.+..
T Consensus 185 ~kkl~~~gi~v~ELTGD~ql~~te--i-~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd-~RGpvlEt 260 (1230)
T KOG0952|consen 185 SKKLAPLGISVRELTGDTQLTKTE--I-ADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHD-DRGPVLET 260 (1230)
T ss_pred hhhcccccceEEEecCcchhhHHH--H-HhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcC-cccchHHH
Confidence 998888999999999988654432 2 2499999999987322222333334567899999999997654 46777777
Q ss_pred HHHhcC-------CCCcEEEEeccccHHHHHHHHHhcCCC-eEEEEcCcccccCCccEEEEecccc-----------hhH
Q 001261 641 IVQNIR-------PDRQTVLFSATFPRQVEILARKVLNKP-VEIQVGGRSVVNKDITQLVEVRPES-----------DRF 701 (1112)
Q Consensus 641 il~~~~-------~~~q~il~SAT~~~~~~~l~~~~~~~p-~~i~i~~~~~~~~~i~q~~~~~~~~-----------~k~ 701 (1112)
|+.... ....+|++|||+|+- +.++.++--+| .-+..-...+.+..+.+.+.-.... ...
T Consensus 261 iVaRtlr~vessqs~IRivgLSATlPN~-eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~ 339 (1230)
T KOG0952|consen 261 IVARTLRLVESSQSMIRIVGLSATLPNY-EDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCY 339 (1230)
T ss_pred HHHHHHHHHHhhhhheEEEEeeccCCCH-HHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHH
Confidence 765442 446799999999964 44665555443 2222222233333455555433322 111
Q ss_pred HHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhc-----------------------CCCeeeecCCCCHHHHHHHHH
Q 001261 702 LRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH-----------------------GYPCLSLHGAKDQTDRESTIS 758 (1112)
Q Consensus 702 ~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~-----------------------g~~~~~ihg~~~~~~R~~~~~ 758 (1112)
..+++.+ ..+.+++|||.++......++.|.+. ...+.++|.||...+|..+..
T Consensus 340 ~kv~e~~---~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~ 416 (1230)
T KOG0952|consen 340 DKVVEFL---QEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEK 416 (1230)
T ss_pred HHHHHHH---HcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHH
Confidence 2222333 34669999999999998888888653 134678999999999999999
Q ss_pred HhhcCCccEEEecCcccccCCCCCccEEEE----eCCCC------CHhHHHHHhcccCCC--CCccEEEEEecCCccCch
Q 001261 759 DFKSNVCNLLIATSVAARGLDVKELELVIN----FDAPN------HYEDYVHRVGRTGRA--GRKGCAITFISEEDAKYS 826 (1112)
Q Consensus 759 ~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~----~d~p~------s~~~y~QriGR~gR~--G~~g~~i~~~~~~d~~~~ 826 (1112)
.|..|.++||+||..++.|+|+|.--++|- ||.-. .+.+.+|.+|||||. +..|.++++.+.+-..+.
T Consensus 417 ~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y 496 (1230)
T KOG0952|consen 417 EFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHY 496 (1230)
T ss_pred HHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHH
Confidence 999999999999999999999998877773 55544 467889999999995 467888866654433333
Q ss_pred HHHHHHHhhccCCCC-hhHHHHHHHHHHHHhhh
Q 001261 827 PDLVKALELSEQVVP-DDLKALADSFMAKVNQG 858 (1112)
Q Consensus 827 ~~i~~~l~~~~~~vp-~~l~~~~~~~~~~~~~~ 858 (1112)
+..|.... +|. ..+..+++...+.+.-|
T Consensus 497 ---~sLl~~~~-piES~~~~~L~dnLnAEi~Lg 525 (1230)
T KOG0952|consen 497 ---ESLLTGQN-PIESQLLPCLIDNLNAEISLG 525 (1230)
T ss_pred ---HHHHcCCC-hhHHHHHHHHHHhhhhheeec
Confidence 33333222 232 33466777777776544
|
|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-29 Score=308.50 Aligned_cols=355 Identities=16% Similarity=0.184 Sum_probs=233.1
Q ss_pred CCChHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001261 488 EKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g--~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
..|.|+|..++..++.. ..+|+..++|.|||+.+++.+...+.. +....+|||||+ .|+.||..++.+.+
T Consensus 151 ~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~------g~~~rvLIVvP~-sL~~QW~~El~~kF- 222 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT------GRAERVLILVPE-TLQHQWLVEMLRRF- 222 (956)
T ss_pred CCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc------CCCCcEEEEcCH-HHHHHHHHHHHHHh-
Confidence 36889999998877643 478999999999999887766655443 234579999997 79999999987643
Q ss_pred hcCceEEEEeCCCChHHHH---HHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccC--ChhHHHH
Q 001261 566 VMGVRCVPVYGGSGVAQQI---SELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG--FEPQITR 640 (1112)
Q Consensus 566 ~~~i~~~~~~gg~~~~~~~---~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~g--f~~~i~~ 640 (1112)
++.+..+.++. ..... .......+++|||++.|...-... ....-..+++|||||||++-... -...+.
T Consensus 223 --~l~~~i~~~~~-~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~--~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~- 296 (956)
T PRK04914 223 --NLRFSLFDEER-YAEAQHDADNPFETEQLVICSLDFLRRNKQRL--EQALAAEWDLLVVDEAHHLVWSEEAPSREYQ- 296 (956)
T ss_pred --CCCeEEEcCcc-hhhhcccccCccccCcEEEEEHHHhhhCHHHH--HHHhhcCCCEEEEechhhhccCCCCcCHHHH-
Confidence 44443332221 11100 011123689999998775311000 00112368999999999986321 112222
Q ss_pred HHHhc-CCCCcEEEEeccccH-H------------------HHHHH-------------HHhc-CCC-------------
Q 001261 641 IVQNI-RPDRQTVLFSATFPR-Q------------------VEILA-------------RKVL-NKP------------- 673 (1112)
Q Consensus 641 il~~~-~~~~q~il~SAT~~~-~------------------~~~l~-------------~~~~-~~p------------- 673 (1112)
.+..+ .....+|++|||+-. . ...|. ..++ ..+
T Consensus 297 ~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll 376 (956)
T PRK04914 297 VVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELL 376 (956)
T ss_pred HHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHh
Confidence 33333 234568999999631 0 00010 0000 000
Q ss_pred -------e-----------------------------EEEEcC-----cccccCCccEEEE-------------------
Q 001261 674 -------V-----------------------------EIQVGG-----RSVVNKDITQLVE------------------- 693 (1112)
Q Consensus 674 -------~-----------------------------~i~i~~-----~~~~~~~i~q~~~------------------- 693 (1112)
+ .+.+.. ..++. ...+.+.
T Consensus 377 ~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~-R~~~~~~l~~~~~y~~~~~~~~~~~~ 455 (956)
T PRK04914 377 GEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPK-RELHPIPLPLPEQYQTAIKVSLEARA 455 (956)
T ss_pred cccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCc-CceeEeecCCCHHHHHHHHHhHHHHH
Confidence 0 000000 00000 0001110
Q ss_pred ------------------ecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHH-hcCCCeeeecCCCCHHHHH
Q 001261 694 ------------------VRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLL-KHGYPCLSLHGAKDQTDRE 754 (1112)
Q Consensus 694 ------------------~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~-~~g~~~~~ihg~~~~~~R~ 754 (1112)
+...+.|+..|+.+|... ...++||||+++..+..|...|. ..|+.+..|||+|++.+|.
T Consensus 456 ~~~l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~-~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~ 534 (956)
T PRK04914 456 RDMLYPEQIYQEFEDNATWWNFDPRVEWLIDFLKSH-RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERD 534 (956)
T ss_pred HhhcCHHHHHHHHhhhhhccccCHHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHH
Confidence 111223555666666543 35799999999999999999994 5799999999999999999
Q ss_pred HHHHHhhcC--CccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHH
Q 001261 755 STISDFKSN--VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKA 832 (1112)
Q Consensus 755 ~~~~~F~~g--~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~ 832 (1112)
.++..|+++ ...|||||+++++|+|++.+++|||||+|+++..|+||+||+||.|+.+.+.+++..........|...
T Consensus 535 ~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~ 614 (956)
T PRK04914 535 RAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRW 614 (956)
T ss_pred HHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHH
Confidence 999999974 599999999999999999999999999999999999999999999999988777765555555555554
Q ss_pred H----hhccCCCChhHHHHHHHHHHHHhhhh
Q 001261 833 L----ELSEQVVPDDLKALADSFMAKVNQGL 859 (1112)
Q Consensus 833 l----~~~~~~vp~~l~~~~~~~~~~~~~~~ 859 (1112)
+ +...+.+|. ...+.+.|...+...+
T Consensus 615 ~~~~l~ife~~~~~-~~~v~~~~~~~l~~~l 644 (956)
T PRK04914 615 YHEGLNAFEHTCPT-GRALYDEFGDELIPYL 644 (956)
T ss_pred HhhhcCceeccCCC-HHHHHHHHHHHHHHHH
Confidence 4 344455554 6677777777776655
|
|
| >KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-30 Score=271.01 Aligned_cols=342 Identities=19% Similarity=0.319 Sum_probs=262.3
Q ss_pred cCCCCHHHHHHHH-HCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccc
Q 001261 471 QTGLTSKIMETIR-KLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT 549 (1112)
Q Consensus 471 ~~~L~~~l~~~l~-~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Pt 549 (1112)
.|+.+....+.|+ .+.+.+.+|.|..+|++.|.|.+++++.|||.||+++|.||+|-. ...+|||||.
T Consensus 75 ~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a-----------dg~alvi~pl 143 (695)
T KOG0353|consen 75 DFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA-----------DGFALVICPL 143 (695)
T ss_pred CCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc-----------CCceEeechh
Confidence 4566677777776 477889999999999999999999999999999999999999843 4468999999
Q ss_pred hhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH---HHH---hcCCeEEEeCchHHHHH---HHhcCCcccccCCceE
Q 001261 550 RELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SEL---KRGTEIVVCTPGRMIDI---LCTSGGKITNLRRVTY 620 (1112)
Q Consensus 550 reLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l---~~~~~IvV~Tp~~L~~~---l~~~~~~~~~l~~i~~ 620 (1112)
..|.....-.++. +|+....+...++..+.. ..+ .....+|+.||+.+..- +..- .+......+.+
T Consensus 144 islmedqil~lkq----lgi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkl-eka~~~~~~~~ 218 (695)
T KOG0353|consen 144 ISLMEDQILQLKQ----LGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKL-EKALEAGFFKL 218 (695)
T ss_pred HHHHHHHHHHHHH----hCcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHH-HHHhhcceeEE
Confidence 9998765555544 577766666555544321 111 12357899999987431 1110 11234566889
Q ss_pred EEeccchhhhccC--ChhHHHH--HHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecc
Q 001261 621 LVMDEADRMFDMG--FEPQITR--IVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRP 696 (1112)
Q Consensus 621 vViDEah~~~~~g--f~~~i~~--il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~ 696 (1112)
|-|||+|....|| |.+.+.. |+...-++..+|+++||.++.+..-+..++.--..++. ..++..+++...+...+
T Consensus 219 iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf-~a~fnr~nl~yev~qkp 297 (695)
T KOG0353|consen 219 IAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTF-RAGFNRPNLKYEVRQKP 297 (695)
T ss_pred EeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhhee-ecccCCCCceeEeeeCC
Confidence 9999999999888 7666553 45555577889999999988887777666543221221 12344455554443333
Q ss_pred --cchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcc
Q 001261 697 --ESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVA 774 (1112)
Q Consensus 697 --~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~ 774 (1112)
.++-...+..+|...+.+...||||-++.+|+.++..|..+|+.+..+|..|.+.++.-+-+.|..|++.|+|||-.+
T Consensus 298 ~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvaf 377 (695)
T KOG0353|consen 298 GNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAF 377 (695)
T ss_pred CChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeee
Confidence 234556666677666666788999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCccEEEEeCCCCCHhHHHH-------------------------------------------HhcccCCCCCc
Q 001261 775 ARGLDVKELELVINFDAPNHYEDYVH-------------------------------------------RVGRTGRAGRK 811 (1112)
Q Consensus 775 ~~GlDi~~v~~VI~~d~p~s~~~y~Q-------------------------------------------riGR~gR~G~~ 811 (1112)
++|||-|+|.+||+..+|.+++.|.| -.||+||.|.+
T Consensus 378 gmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~ 457 (695)
T KOG0353|consen 378 GMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMK 457 (695)
T ss_pred cccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCc
Confidence 99999999999999999999999999 67999999999
Q ss_pred cEEEEEecCCccCchHHH
Q 001261 812 GCAITFISEEDAKYSPDL 829 (1112)
Q Consensus 812 g~~i~~~~~~d~~~~~~i 829 (1112)
..||++|.-.|......+
T Consensus 458 a~cilyy~~~difk~ssm 475 (695)
T KOG0353|consen 458 ADCILYYGFADIFKISSM 475 (695)
T ss_pred ccEEEEechHHHHhHHHH
Confidence 999999976555444333
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=303.86 Aligned_cols=309 Identities=20% Similarity=0.255 Sum_probs=220.9
Q ss_pred CChHHHHHHHHHHHcC---CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001261 489 KPMPIQAQALPVIMSG---RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g---~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
.||+.|.+++..+..+ +++|+.|+||||||.+|+.++...+.. |.++|||+||++|+.|++..++..
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~--------g~~vLvLvPt~~L~~Q~~~~l~~~-- 213 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ--------GKQALVLVPEIALTPQMLARFRAR-- 213 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc--------CCeEEEEeCcHHHHHHHHHHHHHH--
Confidence 6899999999999974 789999999999999999888776543 678999999999999999988875
Q ss_pred hcCceEEEEeCCCChHHHHHHH---h-cCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccC---ChhHH
Q 001261 566 VMGVRCVPVYGGSGVAQQISEL---K-RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG---FEPQI 638 (1112)
Q Consensus 566 ~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~g---f~~~i 638 (1112)
++..+..++|+.+..+....+ . ..++|||+|++.+. ..+.++++|||||+|.....+ ...+.
T Consensus 214 -fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~----------~p~~~l~liVvDEeh~~s~~~~~~p~y~~ 282 (679)
T PRK05580 214 -FGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF----------LPFKNLGLIIVDEEHDSSYKQQEGPRYHA 282 (679)
T ss_pred -hCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc----------ccccCCCEEEEECCCccccccCcCCCCcH
Confidence 467888999998776554332 2 34799999998762 357789999999999764332 11122
Q ss_pred HH--HHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCccccc-CCccEEEEeccc------chhHHHHHHHHH
Q 001261 639 TR--IVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVN-KDITQLVEVRPE------SDRFLRLLELLG 709 (1112)
Q Consensus 639 ~~--il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~-~~i~q~~~~~~~------~~k~~~ll~~l~ 709 (1112)
.. ++.....+.++|++|||++......+.. +....+.+....... ......+.+... ..--..++..+.
T Consensus 283 r~va~~ra~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~ 360 (679)
T PRK05580 283 RDLAVVRAKLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIK 360 (679)
T ss_pred HHHHHHHhhccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHH
Confidence 22 3344457889999999987665444322 222222222221100 001111111110 001134556666
Q ss_pred hhhcCC-eEEEEeCCHH------------------------------------------------------------HHH
Q 001261 710 EWYEKG-KILIFVHSQE------------------------------------------------------------KCD 728 (1112)
Q Consensus 710 ~~~~~~-~vLIF~~s~~------------------------------------------------------------~~~ 728 (1112)
+....+ ++|||+|.+. .++
T Consensus 361 ~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e 440 (679)
T PRK05580 361 QRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTE 440 (679)
T ss_pred HHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHH
Confidence 555444 8999987521 346
Q ss_pred HHHHHHHhc--CCCeeeecCCCCH--HHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCC--CC--------
Q 001261 729 ALFRDLLKH--GYPCLSLHGAKDQ--TDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAP--NH-------- 794 (1112)
Q Consensus 729 ~l~~~L~~~--g~~~~~ihg~~~~--~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p--~s-------- 794 (1112)
.+++.|... ++++..+|+++.+ .++..++..|.+|+.+|||+|+++++|+|+|+|++|+.+|.. -+
T Consensus 441 ~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~E 520 (679)
T PRK05580 441 RLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASE 520 (679)
T ss_pred HHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHH
Confidence 777777775 7899999999974 678999999999999999999999999999999999766543 22
Q ss_pred --HhHHHHHhcccCCCCCccEEEEEecC
Q 001261 795 --YEDYVHRVGRTGRAGRKGCAITFISE 820 (1112)
Q Consensus 795 --~~~y~QriGR~gR~G~~g~~i~~~~~ 820 (1112)
...|+|++||+||.+..|.+++....
T Consensus 521 r~~~~l~q~~GRagR~~~~g~viiqT~~ 548 (679)
T PRK05580 521 RTFQLLTQVAGRAGRAEKPGEVLIQTYH 548 (679)
T ss_pred HHHHHHHHHHhhccCCCCCCEEEEEeCC
Confidence 36789999999999999999976543
|
|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-28 Score=297.73 Aligned_cols=314 Identities=20% Similarity=0.216 Sum_probs=207.6
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
++...|+|+|..+........-+|+.||||+|||.++++++...+.. +....++|++||+++++|++..+..++
T Consensus 282 ~~~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~------~~~~gi~~aLPT~Atan~m~~Rl~~~~ 355 (878)
T PRK09694 282 DNGYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ------GLADSIIFALPTQATANAMLSRLEALA 355 (878)
T ss_pred cCCCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh------CCCCeEEEECcHHHHHHHHHHHHHHHH
Confidence 33458999999886554455678889999999999988877654432 224578999999999999999998766
Q ss_pred hhc--CceEEEEeCCCChHHHH--------------------HHHhc-------CCeEEEeCchHHHHHHHhcCCccccc
Q 001261 565 KVM--GVRCVPVYGGSGVAQQI--------------------SELKR-------GTEIVVCTPGRMIDILCTSGGKITNL 615 (1112)
Q Consensus 565 ~~~--~i~~~~~~gg~~~~~~~--------------------~~l~~-------~~~IvV~Tp~~L~~~l~~~~~~~~~l 615 (1112)
..+ ...+.+++|........ ..+.. -..|+|||...++..+..... ..+
T Consensus 356 ~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh--~~l 433 (878)
T PRK09694 356 SKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKH--RFI 433 (878)
T ss_pred HHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccch--HHH
Confidence 533 34567777765422111 01111 158999999988755443211 122
Q ss_pred CCc----eEEEeccchhhhccCChhHHHHHHHhc-CCCCcEEEEeccccHHHHHH-HHHhcCC---------CeEEEEcC
Q 001261 616 RRV----TYLVMDEADRMFDMGFEPQITRIVQNI-RPDRQTVLFSATFPRQVEIL-ARKVLNK---------PVEIQVGG 680 (1112)
Q Consensus 616 ~~i----~~vViDEah~~~~~gf~~~i~~il~~~-~~~~q~il~SAT~~~~~~~l-~~~~~~~---------p~~i~i~~ 680 (1112)
..+ ++|||||+|.+ +.-....+..++..+ .....+|+||||+|..+... ...+... |.......
T Consensus 434 R~~~La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~ 512 (878)
T PRK09694 434 RGFGLGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGV 512 (878)
T ss_pred HHHhhccCeEEEechhhC-CHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcccccccccccccccccccc
Confidence 222 48999999975 222233444444443 34567999999999887543 3332111 11000000
Q ss_pred c---ccccC------CccEEEEec----ccchhHHHHHHHHHhh-hcCCeEEEEeCCHHHHHHHHHHHHhcC---CCeee
Q 001261 681 R---SVVNK------DITQLVEVR----PESDRFLRLLELLGEW-YEKGKILIFVHSQEKCDALFRDLLKHG---YPCLS 743 (1112)
Q Consensus 681 ~---~~~~~------~i~q~~~~~----~~~~k~~~ll~~l~~~-~~~~~vLIF~~s~~~~~~l~~~L~~~g---~~~~~ 743 (1112)
. .+... .....+.+. ........++..|... ..++++||||||+..|..++..|...+ +.+..
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~l 592 (878)
T PRK09694 513 NGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDL 592 (878)
T ss_pred ccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEE
Confidence 0 00000 011111111 1111112334444332 346789999999999999999999764 67999
Q ss_pred ecCCCCHHHH----HHHHHHh-hcCC---ccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCC
Q 001261 744 LHGAKDQTDR----ESTISDF-KSNV---CNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGR 810 (1112)
Q Consensus 744 ihg~~~~~~R----~~~~~~F-~~g~---~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~ 810 (1112)
+||.+...+| ..+++.| ++|. ..|||||+++++|||| ++++||...+| .+.|+||+||+||.+.
T Consensus 593 lHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 593 FHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred EeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 9999999999 4678888 6776 4799999999999999 58999998888 6799999999999875
|
|
| >KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-29 Score=284.12 Aligned_cols=309 Identities=20% Similarity=0.235 Sum_probs=246.7
Q ss_pred hHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCce
Q 001261 491 MPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVR 570 (1112)
Q Consensus 491 t~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~ 570 (1112)
+++-.+.|.+|...+-+||.|+||||||++.-..+...=. ...|.++-+.-|.|..|+. +..+++..+|++
T Consensus 267 y~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGy------tk~gk~IgcTQPRRVAAmS---VAaRVA~EMgvk 337 (902)
T KOG0923|consen 267 YPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGY------TKGGKKIGCTQPRRVAAMS---VAARVAEEMGVK 337 (902)
T ss_pred hhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhccc------ccCCceEeecCcchHHHHH---HHHHHHHHhCcc
Confidence 3667788888899999999999999999863333332211 1123445555699998885 455667788988
Q ss_pred EEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccch-hhhccCChhHHHHHHHhcCCCC
Q 001261 571 CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD-RMFDMGFEPQITRIVQNIRPDR 649 (1112)
Q Consensus 571 ~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah-~~~~~gf~~~i~~il~~~~~~~ 649 (1112)
...-+|++..++++.. ..+.|.++|.|+|+.-+... .+|.++++||||||| |-+..+....+..-+..++|+.
T Consensus 338 LG~eVGYsIRFEdcTS--ekTvlKYMTDGmLlREfL~e----pdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdL 411 (902)
T KOG0923|consen 338 LGHEVGYSIRFEDCTS--EKTVLKYMTDGMLLREFLSE----PDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDL 411 (902)
T ss_pred cccccceEEEeccccC--cceeeeeecchhHHHHHhcc----ccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcc
Confidence 8888898888888765 45889999999999887654 589999999999999 8888888888888888889999
Q ss_pred cEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhh---cCCeEEEEeCCHHH
Q 001261 650 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWY---EKGKILIFVHSQEK 726 (1112)
Q Consensus 650 q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~---~~~~vLIF~~s~~~ 726 (1112)
.+|+.|||+ +.+.|...|-.-|++...+.+- .+..++...++.+.+...+..+.++. +.|.||||...++.
T Consensus 412 KllIsSAT~--DAekFS~fFDdapIF~iPGRRy----PVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeE 485 (902)
T KOG0923|consen 412 KLLISSATM--DAEKFSAFFDDAPIFRIPGRRY----PVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEE 485 (902)
T ss_pred eEEeecccc--CHHHHHHhccCCcEEeccCccc----ceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHH
Confidence 999999999 5677877777778866554432 23344555666677777666665543 45899999999999
Q ss_pred HHHHHHHHHhc---------CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCC------
Q 001261 727 CDALFRDLLKH---------GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDA------ 791 (1112)
Q Consensus 727 ~~~l~~~L~~~---------g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~------ 791 (1112)
++.+...|... .+-+++||+.+|.+.+..|++--..|-.+|++||++|+.+|.|++|.+||+-++
T Consensus 486 IEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsy 565 (902)
T KOG0923|consen 486 IETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSY 565 (902)
T ss_pred HHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCc
Confidence 98888777653 355889999999999999999999999999999999999999999999998554
Q ss_pred ------------CCCHhHHHHHhcccCCCCCccEEEEEecCC
Q 001261 792 ------------PNHYEDYVHRVGRTGRAGRKGCAITFISEE 821 (1112)
Q Consensus 792 ------------p~s~~~y~QriGR~gR~G~~g~~i~~~~~~ 821 (1112)
|.|-+...||.||+||+| +|.||.||+.+
T Consensus 566 nprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~ 606 (902)
T KOG0923|consen 566 NPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAW 606 (902)
T ss_pred CCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechh
Confidence 556788899999999998 99999999854
|
|
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=289.27 Aligned_cols=321 Identities=20% Similarity=0.241 Sum_probs=228.9
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+| ..|+++|..+--++..| -|+.++||+|||++|++|++..+.. |..|+||+||++||.|.+.++..++
T Consensus 79 lg-~~~ydvQliGg~~Lh~G--~Iaem~TGeGKTL~a~Lpa~~~al~--------G~~V~VvTpn~yLA~qd~e~m~~l~ 147 (896)
T PRK13104 79 LG-LRHFDVQLIGGMVLHEG--NIAEMRTGEGKTLVATLPAYLNAIS--------GRGVHIVTVNDYLAKRDSQWMKPIY 147 (896)
T ss_pred cC-CCcchHHHhhhhhhccC--ccccccCCCCchHHHHHHHHHHHhc--------CCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 44 35677777666555555 4889999999999999999977653 4568999999999999999999999
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHH-HHHHHhcCCccccc-----CCceEEEeccchhhh-cc-----
Q 001261 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM-IDILCTSGGKITNL-----RRVTYLVMDEADRMF-DM----- 632 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L-~~~l~~~~~~~~~l-----~~i~~vViDEah~~~-~~----- 632 (1112)
..+|+.+.+++||.+...+...+ .++|+||||++| .++|..+. ..++ ..+.++||||||.|+ |.
T Consensus 148 ~~lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~--~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPL 223 (896)
T PRK13104 148 EFLGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNM--AFSLTDKVQRELNFAIVDEVDSILIDEARTPL 223 (896)
T ss_pred cccCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCC--ccchHhhhccccceEEeccHhhhhhhccCCce
Confidence 99999999999999887775554 489999999999 88886541 1223 588999999999874 20
Q ss_pred ----------CChhHHHHHHHhcCCC--------------CcEEEEecc-------------------------------
Q 001261 633 ----------GFEPQITRIVQNIRPD--------------RQTVLFSAT------------------------------- 657 (1112)
Q Consensus 633 ----------gf~~~i~~il~~~~~~--------------~q~il~SAT------------------------------- 657 (1112)
.+...+..++..+... ...|.||-.
T Consensus 224 IISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~ 303 (896)
T PRK13104 224 IISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMH 303 (896)
T ss_pred eeeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHH
Confidence 0112222233333221 122322222
Q ss_pred --------------------------------------------------------------------------------
Q 001261 658 -------------------------------------------------------------------------------- 657 (1112)
Q Consensus 658 -------------------------------------------------------------------------------- 657 (1112)
T Consensus 304 ~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLs 383 (896)
T PRK13104 304 HVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLS 383 (896)
T ss_pred HHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhc
Confidence
Q ss_pred -----ccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcC-CeEEEEeCCHHHHHHHH
Q 001261 658 -----FPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEK-GKILIFVHSQEKCDALF 731 (1112)
Q Consensus 658 -----~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~-~~vLIF~~s~~~~~~l~ 731 (1112)
.......| ..+++-++.+.....+...... ...++.....|+..++..+...... .++||||+|+..++.|+
T Consensus 384 GMTGTa~te~~Ef-~~iY~l~Vv~IPtnkp~~R~d~-~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls 461 (896)
T PRK13104 384 GMTGTADTEAYEF-QQIYNLEVVVIPTNRSMIRKDE-ADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLS 461 (896)
T ss_pred cCCCCChhHHHHH-HHHhCCCEEECCCCCCcceecC-CCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHH
Confidence 11100000 1111111111111111110001 1122344557888888887766544 59999999999999999
Q ss_pred HHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCC------------------------------
Q 001261 732 RDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVK------------------------------ 781 (1112)
Q Consensus 732 ~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~------------------------------ 781 (1112)
..|...|+++..||+.+.+.++..+...|+.|. |+|||++|+||+||.
T Consensus 462 ~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (896)
T PRK13104 462 QLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQK 539 (896)
T ss_pred HHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhh
Confidence 999999999999999999999999999999994 999999999999996
Q ss_pred --------CccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccC
Q 001261 782 --------ELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAK 824 (1112)
Q Consensus 782 --------~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~ 824 (1112)
+=-+||--..+.|----.|-.||+||-|.+|.+..|++-+|.-
T Consensus 540 ~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l 590 (896)
T PRK13104 540 RHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNL 590 (896)
T ss_pred hhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHH
Confidence 2235666667777777789999999999999999999876653
|
|
| >KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-29 Score=285.55 Aligned_cols=309 Identities=21% Similarity=0.268 Sum_probs=235.5
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceE
Q 001261 492 PIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRC 571 (1112)
Q Consensus 492 ~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~ 571 (1112)
.+-.+.+..+-.++-+|++|+||||||++.-..+++.-.. ..|. +.+.-|.|..|. ...++++..++...
T Consensus 54 ~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~------~~g~-I~~TQPRRVAav---slA~RVAeE~~~~l 123 (674)
T KOG0922|consen 54 KYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFA------SSGK-IACTQPRRVAAV---SLAKRVAEEMGCQL 123 (674)
T ss_pred HHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccc------cCCc-EEeecCchHHHH---HHHHHHHHHhCCCc
Confidence 3445777788889999999999999999755444433221 1233 556669998887 45566666777777
Q ss_pred EEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccch-hhhccCChhHHHHHHHhcCCCCc
Q 001261 572 VPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD-RMFDMGFEPQITRIVQNIRPDRQ 650 (1112)
Q Consensus 572 ~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah-~~~~~gf~~~i~~il~~~~~~~q 650 (1112)
...+|++..++.... ..+.|.++|.|.|+..+... ..|+.+++||||||| |-+..+....+.+-+...+++..
T Consensus 124 G~~VGY~IRFed~ts--~~TrikymTDG~LLRE~l~D----p~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~Lk 197 (674)
T KOG0922|consen 124 GEEVGYTIRFEDSTS--KDTRIKYMTDGMLLREILKD----PLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLK 197 (674)
T ss_pred CceeeeEEEecccCC--CceeEEEecchHHHHHHhcC----CccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCce
Confidence 777777766665433 35899999999999887654 579999999999999 77777766666666666778899
Q ss_pred EEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHH---HhhhcCCeEEEEeCCHHHH
Q 001261 651 TVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELL---GEWYEKGKILIFVHSQEKC 727 (1112)
Q Consensus 651 ~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l---~~~~~~~~vLIF~~s~~~~ 727 (1112)
+|+||||+ +...|...|.+-|+ +.+.++.++ +...+...+..+.+...+..+ +...+.|.+|||.++++++
T Consensus 198 lIimSATl--da~kfS~yF~~a~i-~~i~GR~fP---Vei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEI 271 (674)
T KOG0922|consen 198 LIIMSATL--DAEKFSEYFNNAPI-LTIPGRTFP---VEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEI 271 (674)
T ss_pred EEEEeeee--cHHHHHHHhcCCce-EeecCCCCc---eeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHH
Confidence 99999999 45666666666565 566666554 333333344444444433333 2234678999999999999
Q ss_pred HHHHHHHHhc----C--C--CeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCC--------
Q 001261 728 DALFRDLLKH----G--Y--PCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDA-------- 791 (1112)
Q Consensus 728 ~~l~~~L~~~----g--~--~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~-------- 791 (1112)
+.++..|.+. + . -++++||.|+.+++..++..-..|..+|+|||++++..|.|+++.+||+-++
T Consensus 272 e~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p 351 (674)
T KOG0922|consen 272 EAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNP 351 (674)
T ss_pred HHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeecc
Confidence 9999999875 1 1 2578999999999999999999999999999999999999999999997444
Q ss_pred ----------CCCHhHHHHHhcccCCCCCccEEEEEecCCcc
Q 001261 792 ----------PNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823 (1112)
Q Consensus 792 ----------p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~ 823 (1112)
|.|.+...||.||+||+| +|.||.+|++++.
T Consensus 352 ~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 352 RTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAY 392 (674)
T ss_pred ccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHH
Confidence 668899999999999998 9999999998664
|
|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=288.28 Aligned_cols=183 Identities=17% Similarity=0.261 Sum_probs=143.0
Q ss_pred hHHhhcCHHHHHHHHhhcCcee-ccCCCCCcccccccCCCCHHHHHHHH-----HCCCCCC---hHHHHHHHHHHHcCCC
Q 001261 436 KEIARMTPEEVSAYRKQLELKI-HGKDVPKPIKTWHQTGLTSKIMETIR-----KLNYEKP---MPIQAQALPVIMSGRD 506 (1112)
Q Consensus 436 ~~~~~~~~~~~~~~r~~~~~~~-~~~~~p~pi~~~~~~~L~~~l~~~l~-----~~~~~~p---t~iQ~~ai~~il~g~d 506 (1112)
+.+..++.+++...-..+...+ .|... .. .-...|++...+...+. ..||..| ||+|.|+||.++.+++
T Consensus 32 ~~~~~lsd~eL~~kt~~~k~~l~~~~~l-d~-~l~eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~g 109 (970)
T PRK12899 32 EKFSSLSDDELRNKTAELKQRYQDGESL-DK-LLPEAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKG 109 (970)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHcCCch-HH-HHHHHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCC
Confidence 3466777777654333333222 12111 00 01356888888888776 6899999 9999999999999999
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHH
Q 001261 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISE 586 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~ 586 (1112)
+|+.++||+|||++|++|++..+.. +..++||+||++||.|+++++..++..+|+++.+++||.+...+...
T Consensus 110 vIAeaqTGeGKTLAf~LP~l~~aL~--------g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~ 181 (970)
T PRK12899 110 FITEMQTGEGKTLTAVMPLYLNALT--------GKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEI 181 (970)
T ss_pred eEEEeCCCCChHHHHHHHHHHHHhh--------cCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHH
Confidence 9999999999999999999988764 22489999999999999999999999999999999999999988766
Q ss_pred HhcCCeEEEeCchHH-HHHHHhcCCccc----ccCCceEEEeccchhhh
Q 001261 587 LKRGTEIVVCTPGRM-IDILCTSGGKIT----NLRRVTYLVMDEADRMF 630 (1112)
Q Consensus 587 l~~~~~IvV~Tp~~L-~~~l~~~~~~~~----~l~~i~~vViDEah~~~ 630 (1112)
+ +++||||||++| .++|..+..... -...+.++||||||.|+
T Consensus 182 y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 182 Y--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred c--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhh
Confidence 5 499999999999 999876431111 12356899999999875
|
|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.5e-28 Score=256.38 Aligned_cols=202 Identities=51% Similarity=0.867 Sum_probs=185.0
Q ss_pred cccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEcc
Q 001261 469 WHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP 548 (1112)
Q Consensus 469 ~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~P 548 (1112)
|+++++++.+.+.|..+|+..|+++|.++++.++.|+++|++++||+|||++|++|++.++.... ...++++||++|
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~---~~~~~~viii~p 77 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP---KKDGPQALILAP 77 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc---ccCCceEEEEcC
Confidence 78899999999999999999999999999999999999999999999999999999999987642 135789999999
Q ss_pred chhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchh
Q 001261 549 TRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADR 628 (1112)
Q Consensus 549 treLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~ 628 (1112)
|++|+.|+...+..+....++.+.+++|+.........+..+++|+||||+.|..++.... ..+.++.+|||||+|.
T Consensus 78 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~---~~~~~l~~lIvDE~h~ 154 (203)
T cd00268 78 TRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGK---LDLSKVKYLVLDEADR 154 (203)
T ss_pred CHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC---CChhhCCEEEEeChHH
Confidence 9999999999999998888999999999998887777777789999999999999887643 5678899999999999
Q ss_pred hhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEE
Q 001261 629 MFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEI 676 (1112)
Q Consensus 629 ~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i 676 (1112)
+.+.+|...+..++..++...|+++||||+++.+..++..++.+|+.+
T Consensus 155 ~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 155 MLDMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred hhccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 999999999999999999999999999999999999999999999865
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.6e-27 Score=282.58 Aligned_cols=323 Identities=21% Similarity=0.260 Sum_probs=230.5
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+| ..|+++|.-+.-++..|+ |....||+|||+++.+|++..... |..|-||+||--||.|.+..+..++
T Consensus 77 ~g-~~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~--------G~~v~vvT~neyLA~Rd~e~~~~~~ 145 (796)
T PRK12906 77 LG-LRPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT--------GKGVHVVTVNEYLSSRDATEMGELY 145 (796)
T ss_pred hC-CCCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc--------CCCeEEEeccHHHHHhhHHHHHHHH
Confidence 55 368899988877776776 889999999999999999987664 7788999999999999999999999
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHH-HHHHhcC---CcccccCCceEEEeccchhhh-ccC------
Q 001261 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMI-DILCTSG---GKITNLRRVTYLVMDEADRMF-DMG------ 633 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~-~~l~~~~---~~~~~l~~i~~vViDEah~~~-~~g------ 633 (1112)
..+|+++.++.|+.+..+..... .|+|++||..-|. ++|..+- ........+.|.||||+|.|+ |..
T Consensus 146 ~~LGl~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLii 223 (796)
T PRK12906 146 RWLGLTVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLII 223 (796)
T ss_pred HhcCCeEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceec
Confidence 99999999999887666554443 4899999998763 3333221 011123567899999999763 210
Q ss_pred ---------ChhHHHHHHHhcCCC-------------------C------------------------------------
Q 001261 634 ---------FEPQITRIVQNIRPD-------------------R------------------------------------ 649 (1112)
Q Consensus 634 ---------f~~~i~~il~~~~~~-------------------~------------------------------------ 649 (1112)
+...+..++..+... .
T Consensus 224 sg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~ 303 (796)
T PRK12906 224 SGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQ 303 (796)
T ss_pred CCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHH
Confidence 111122222221110 0
Q ss_pred -------------------------------------------------------------------------cEEEEec
Q 001261 650 -------------------------------------------------------------------------QTVLFSA 656 (1112)
Q Consensus 650 -------------------------------------------------------------------------q~il~SA 656 (1112)
++.+||+
T Consensus 304 Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTG 383 (796)
T PRK12906 304 ALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTG 383 (796)
T ss_pred HHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCC
Confidence 1222333
Q ss_pred cccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhh-cCCeEEEEeCCHHHHHHHHHHHH
Q 001261 657 TFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLL 735 (1112)
Q Consensus 657 T~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~ 735 (1112)
|.......| ...++-++...+...+....... ...+.....|+..++..+.... .+.++||||+|+..++.|+..|.
T Consensus 384 Ta~~e~~Ef-~~iY~l~vv~IPtnkp~~r~d~~-d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~ 461 (796)
T PRK12906 384 TAKTEEEEF-REIYNMEVITIPTNRPVIRKDSP-DLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLD 461 (796)
T ss_pred CCHHHHHHH-HHHhCCCEEEcCCCCCeeeeeCC-CeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHH
Confidence 322211111 22222222221111111111111 1223344568888888886544 34699999999999999999999
Q ss_pred hcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCC---Ccc-----EEEEeCCCCCHhHHHHHhcccCC
Q 001261 736 KHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVK---ELE-----LVINFDAPNHYEDYVHRVGRTGR 807 (1112)
Q Consensus 736 ~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~---~v~-----~VI~~d~p~s~~~y~QriGR~gR 807 (1112)
+.|+++..+|+.+.+.++..+...++.|. |+|||++|+||+||+ +|. +||++++|.+...|.|++|||||
T Consensus 462 ~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGR 539 (796)
T PRK12906 462 EAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGR 539 (796)
T ss_pred HCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhcc
Confidence 99999999999999888887777777776 999999999999995 899 99999999999999999999999
Q ss_pred CCCccEEEEEecCCccC
Q 001261 808 AGRKGCAITFISEEDAK 824 (1112)
Q Consensus 808 ~G~~g~~i~~~~~~d~~ 824 (1112)
.|.+|.+++|++.+|.-
T Consensus 540 qG~~G~s~~~~sleD~l 556 (796)
T PRK12906 540 QGDPGSSRFYLSLEDDL 556 (796)
T ss_pred CCCCcceEEEEeccchH
Confidence 99999999999877653
|
|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.4e-28 Score=295.10 Aligned_cols=308 Identities=23% Similarity=0.248 Sum_probs=232.4
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceE
Q 001261 492 PIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRC 571 (1112)
Q Consensus 492 ~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~ 571 (1112)
....+.+.++...+-+||+|+||||||++.-..++.... +.+..+.++-|.|.-|. +...+++..++..+
T Consensus 53 ~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~-------~~~g~I~~tQPRRlAAr---svA~RvAeel~~~~ 122 (845)
T COG1643 53 AVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL-------GIAGKIGCTQPRRLAAR---SVAERVAEELGEKL 122 (845)
T ss_pred HHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc-------ccCCeEEecCchHHHHH---HHHHHHHHHhCCCc
Confidence 445566677778888999999999999976655555432 22334555569886666 44556666677777
Q ss_pred EEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccch-hhhccCChhHHHHH-HHhcCCCC
Q 001261 572 VPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD-RMFDMGFEPQITRI-VQNIRPDR 649 (1112)
Q Consensus 572 ~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah-~~~~~gf~~~i~~i-l~~~~~~~ 649 (1112)
...+|+...++... ...+.|.|+|.|.|+..+... ..|+.|++||||||| |.++.+|.-.+..- +..++++.
T Consensus 123 G~~VGY~iRfe~~~--s~~Trik~mTdGiLlrei~~D----~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DL 196 (845)
T COG1643 123 GETVGYSIRFESKV--SPRTRIKVMTDGILLREIQND----PLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDL 196 (845)
T ss_pred CceeeEEEEeeccC--CCCceeEEeccHHHHHHHhhC----cccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCc
Confidence 77777776665532 356899999999999998765 468999999999999 88888877665554 66677789
Q ss_pred cEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecc-cch-hHHHHHHHHHhh--hcCCeEEEEeCCHH
Q 001261 650 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRP-ESD-RFLRLLELLGEW--YEKGKILIFVHSQE 725 (1112)
Q Consensus 650 q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~-~~~-k~~~ll~~l~~~--~~~~~vLIF~~s~~ 725 (1112)
.+|+||||+ +.+.|...|.+-|+ +.+.++.++.. ..+.... .+. -...+...+... ...|.+|||.+.+.
T Consensus 197 KiIimSATl--d~~rfs~~f~~apv-i~i~GR~fPVe---i~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~ 270 (845)
T COG1643 197 KLIIMSATL--DAERFSAYFGNAPV-IEIEGRTYPVE---IRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQR 270 (845)
T ss_pred eEEEEeccc--CHHHHHHHcCCCCE-EEecCCccceE---EEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHH
Confidence 999999999 45567666666665 56666655432 2221111 222 122222333222 24689999999999
Q ss_pred HHHHHHHHHHh----cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCC----------
Q 001261 726 KCDALFRDLLK----HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDA---------- 791 (1112)
Q Consensus 726 ~~~~l~~~L~~----~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~---------- 791 (1112)
+++.++..|.+ ..+.++++||.|+..++.++|+--..|..+|++||+|++++|.|++|.+||+-+.
T Consensus 271 EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~ 350 (845)
T COG1643 271 EIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRT 350 (845)
T ss_pred HHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCccccccccccc
Confidence 99999999998 3478999999999999999999888898889999999999999999999998444
Q ss_pred --------CCCHhHHHHHhcccCCCCCccEEEEEecCCc
Q 001261 792 --------PNHYEDYVHRVGRTGRAGRKGCAITFISEED 822 (1112)
Q Consensus 792 --------p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d 822 (1112)
|.|.++..||.|||||.+ +|.||-+|++.+
T Consensus 351 g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~ 388 (845)
T COG1643 351 GLTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEED 388 (845)
T ss_pred CceeeeEEEechhhhhhhccccccCC-CceEEEecCHHH
Confidence 557889999999999998 999999999743
|
|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-27 Score=282.82 Aligned_cols=361 Identities=24% Similarity=0.316 Sum_probs=263.2
Q ss_pred CCCCCChHHHHHHHHHHHcC-CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCC---CCcEEEEccchhHHHHHHHHH
Q 001261 485 LNYEKPMPIQAQALPVIMSG-RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGD---GPVGLIMAPTRELVQQIHSDI 560 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g-~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~---~~~~LIl~PtreLa~Q~~~~~ 560 (1112)
+|+..+.++|....++.+.+ .++++|||||+|||..+++.||+.+........+. ..++++++|..+|+..|...|
T Consensus 305 ~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~Vgsf 384 (1674)
T KOG0951|consen 305 FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSF 384 (1674)
T ss_pred ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHH
Confidence 45666889999999998876 58999999999999999999999987764432222 347899999999999999999
Q ss_pred HHHhhhcCceEEEEeCCCChHH-HHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHH
Q 001261 561 RKFAKVMGVRCVPVYGGSGVAQ-QISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQIT 639 (1112)
Q Consensus 561 ~~~~~~~~i~~~~~~gg~~~~~-~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~ 639 (1112)
.+.+..+|+.|.-++|...... ++ .+++||||||+.. |.+....+.....+-+.++||||.|.+-| ..++.+.
T Consensus 385 SkRla~~GI~V~ElTgD~~l~~~qi----eeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEIHLLhD-dRGpvLE 458 (1674)
T KOG0951|consen 385 SKRLAPLGITVLELTGDSQLGKEQI----EETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEIHLLHD-DRGPVLE 458 (1674)
T ss_pred HhhccccCcEEEEecccccchhhhh----hcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhhhhccc-ccchHHH
Confidence 9999999999999999875432 22 3589999999986 56666655555566788999999997654 4677777
Q ss_pred HHHHhcC-------CCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEeccc---chhHHH----HH
Q 001261 640 RIVQNIR-------PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPE---SDRFLR----LL 705 (1112)
Q Consensus 640 ~il~~~~-------~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~---~~k~~~----ll 705 (1112)
.|+.... ....++++|||+|+-. ..+.++..++--+...+.+..+.++.|.++-... ..++.. .+
T Consensus 459 SIVaRt~r~ses~~e~~RlVGLSATLPNy~-DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~y 537 (1674)
T KOG0951|consen 459 SIVARTFRRSESTEEGSRLVGLSATLPNYE-DVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACY 537 (1674)
T ss_pred HHHHHHHHHhhhcccCceeeeecccCCchh-hhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHH
Confidence 7765442 3567999999999754 3444444455334444445555556665543332 223322 23
Q ss_pred HHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhc-------------------------------------CCCeeeecCCC
Q 001261 706 ELLGEWYEKGKILIFVHSQEKCDALFRDLLKH-------------------------------------GYPCLSLHGAK 748 (1112)
Q Consensus 706 ~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~-------------------------------------g~~~~~ihg~~ 748 (1112)
+.+......+++|||+.++++.-..+..++.. .+.++++|.||
T Consensus 538 eKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl 617 (1674)
T KOG0951|consen 538 EKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGL 617 (1674)
T ss_pred HHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCC
Confidence 33444445689999999998887777776521 46788999999
Q ss_pred CHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEE----eCC------CCCHhHHHHHhcccCCCCCc--cEEEE
Q 001261 749 DQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN----FDA------PNHYEDYVHRVGRTGRAGRK--GCAIT 816 (1112)
Q Consensus 749 ~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~----~d~------p~s~~~y~QriGR~gR~G~~--g~~i~ 816 (1112)
+..+|..+...|.+|.++|||+|-.+++|+|+|.-+++|- ||+ +.++.+.+||+||+||.+-. |..++
T Consensus 618 ~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegii 697 (1674)
T KOG0951|consen 618 NRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGII 697 (1674)
T ss_pred CcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceee
Confidence 9999999999999999999999999999999999888883 666 44799999999999997643 44444
Q ss_pred EecCCccCchHHHHHHHhhccCCCC--h-hHHHHHHHHHHHHhhh
Q 001261 817 FISEEDAKYSPDLVKALELSEQVVP--D-DLKALADSFMAKVNQG 858 (1112)
Q Consensus 817 ~~~~~d~~~~~~i~~~l~~~~~~vp--~-~l~~~~~~~~~~~~~~ 858 (1112)
.-...+..+ .+..-++++| . .+..+++...+.+..|
T Consensus 698 it~~se~qy------yls~mn~qLpiesq~~~rl~d~lnaeiv~G 736 (1674)
T KOG0951|consen 698 ITDHSELQY------YLSLMNQQLPIESQFVSRLADCLNAEIVLG 736 (1674)
T ss_pred ccCchHhhh------hHHhhhhcCCChHHHHHHhhhhhhhhhhcc
Confidence 333333333 2333344444 2 2345667777666655
|
|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.3e-27 Score=281.79 Aligned_cols=323 Identities=23% Similarity=0.266 Sum_probs=235.8
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+| ..|+++|.-+.-++..|+ |+.+.||+|||++|++|++...+. |..|-||+||..||.|.+.++..++
T Consensus 78 lg-~~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~IvTpn~yLA~rd~e~~~~l~ 146 (830)
T PRK12904 78 LG-MRHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALT--------GKGVHVVTVNDYLAKRDAEWMGPLY 146 (830)
T ss_pred hC-CCCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHc--------CCCEEEEecCHHHHHHHHHHHHHHH
Confidence 45 368888888877776664 899999999999999999744332 3457799999999999999999999
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHH-HHHHHhcCCc---ccccCCceEEEeccchhhh-cc-------
Q 001261 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM-IDILCTSGGK---ITNLRRVTYLVMDEADRMF-DM------- 632 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L-~~~l~~~~~~---~~~l~~i~~vViDEah~~~-~~------- 632 (1112)
..+|+++.+++|+.+..++...+. ++|+|+||+.| .++|..+... ...+..+.++||||||.|+ |.
T Consensus 147 ~~LGlsv~~i~~~~~~~er~~~y~--~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLii 224 (830)
T PRK12904 147 EFLGLSVGVILSGMSPEERREAYA--ADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLII 224 (830)
T ss_pred hhcCCeEEEEcCCCCHHHHHHhcC--CCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceee
Confidence 999999999999998887766653 89999999999 8888654211 1236788999999999874 10
Q ss_pred --------CChhHHHHHHHhcCCC--------C-----------------------------------------------
Q 001261 633 --------GFEPQITRIVQNIRPD--------R----------------------------------------------- 649 (1112)
Q Consensus 633 --------gf~~~i~~il~~~~~~--------~----------------------------------------------- 649 (1112)
.+...+..++..+..+ .
T Consensus 225 Sg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d 304 (830)
T PRK12904 225 SGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRD 304 (830)
T ss_pred ECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcC
Confidence 0112222233222111 1
Q ss_pred --------------------------------------------------------------cEEEEeccccHHHHHHHH
Q 001261 650 --------------------------------------------------------------QTVLFSATFPRQVEILAR 667 (1112)
Q Consensus 650 --------------------------------------------------------------q~il~SAT~~~~~~~l~~ 667 (1112)
.+.+||+|.......| .
T Consensus 305 ~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~-~ 383 (830)
T PRK12904 305 VDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEF-R 383 (830)
T ss_pred CcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHH-H
Confidence 1334444443222222 2
Q ss_pred HhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecC
Q 001261 668 KVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHG 746 (1112)
Q Consensus 668 ~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg 746 (1112)
.+++-++...+...+........ ..+.....|+..++..+..... +.++||||+|+..++.|+..|...|+++..|||
T Consensus 384 ~iY~l~vv~IPtnkp~~r~d~~d-~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLna 462 (830)
T PRK12904 384 EIYNLDVVVIPTNRPMIRIDHPD-LIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNA 462 (830)
T ss_pred HHhCCCEEEcCCCCCeeeeeCCC-eEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccC
Confidence 22232322222222211111111 2234556788888888876443 459999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCc--------------------------------------cEEEE
Q 001261 747 AKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKEL--------------------------------------ELVIN 788 (1112)
Q Consensus 747 ~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v--------------------------------------~~VI~ 788 (1112)
. +.+|+..+..|..+...|+|||++|+||+||+=- -+||-
T Consensus 463 k--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVig 540 (830)
T PRK12904 463 K--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIG 540 (830)
T ss_pred c--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEe
Confidence 5 8899999999999999999999999999998642 36777
Q ss_pred eCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccC
Q 001261 789 FDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAK 824 (1112)
Q Consensus 789 ~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~ 824 (1112)
-..|.|----.|-.||+||-|.+|.+..|++-+|.-
T Consensus 541 TerhesrRid~QlrGRagRQGdpGss~f~lSleD~l 576 (830)
T PRK12904 541 TERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDL 576 (830)
T ss_pred cccCchHHHHHHhhcccccCCCCCceeEEEEcCcHH
Confidence 777888888899999999999999999999876643
|
|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=276.50 Aligned_cols=288 Identities=18% Similarity=0.241 Sum_probs=197.8
Q ss_pred EEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHH-
Q 001261 508 IGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISE- 586 (1112)
Q Consensus 508 ii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~- 586 (1112)
|+.|+||||||.+|+..+...+.. |.++|||+|+++|+.|++..++.. ++..+..++++.+..+....
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~--------g~~vLvlvP~i~L~~Q~~~~l~~~---f~~~v~vlhs~~~~~er~~~~ 69 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL--------GKSVLVLVPEIALTPQMIQRFKYR---FGSQVAVLHSGLSDSEKLQAW 69 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCcHHHHHHHHHHHHHH---hCCcEEEEECCCCHHHHHHHH
Confidence 578999999999997766554432 668999999999999999988875 46678888888876654333
Q ss_pred --Hhc-CCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccC---ChhHHH--HHHHhcCCCCcEEEEeccc
Q 001261 587 --LKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG---FEPQIT--RIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 587 --l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~g---f~~~i~--~il~~~~~~~q~il~SAT~ 658 (1112)
+.. .++|||+|+..|. ..+.++++|||||+|.....+ ...+.. .++.....+.++|++|||+
T Consensus 70 ~~~~~g~~~IVVGTrsalf----------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATP 139 (505)
T TIGR00595 70 RKVKNGEILVVIGTRSALF----------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATP 139 (505)
T ss_pred HHHHcCCCCEEECChHHHc----------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCC
Confidence 333 4799999998652 357789999999999765332 111221 2333444678999999997
Q ss_pred cHHHHHHHHHhcCCCeEEEEcCcccccC-CccEEEEecccc--h-hHHHHHHHHHhhhcC-CeEEEEeCCHHH-------
Q 001261 659 PRQVEILARKVLNKPVEIQVGGRSVVNK-DITQLVEVRPES--D-RFLRLLELLGEWYEK-GKILIFVHSQEK------- 726 (1112)
Q Consensus 659 ~~~~~~l~~~~~~~p~~i~i~~~~~~~~-~i~q~~~~~~~~--~-k~~~ll~~l~~~~~~-~~vLIF~~s~~~------- 726 (1112)
+......+. .+....+.+........ .....+.+.... . --..|+..|.+.... +++|||+|++..
T Consensus 140 sles~~~~~--~g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~ 217 (505)
T TIGR00595 140 SLESYHNAK--QKAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCR 217 (505)
T ss_pred CHHHHHHHh--cCCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhh
Confidence 655433332 12222222221111000 111111111111 1 113456666555544 589999776543
Q ss_pred -----------------------------------------------------HHHHHHHHHhc--CCCeeeecCCCCHH
Q 001261 727 -----------------------------------------------------CDALFRDLLKH--GYPCLSLHGAKDQT 751 (1112)
Q Consensus 727 -----------------------------------------------------~~~l~~~L~~~--g~~~~~ihg~~~~~ 751 (1112)
.+.+...|.+. +.++..+|++++..
T Consensus 218 ~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~ 297 (505)
T TIGR00595 218 SCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSR 297 (505)
T ss_pred hCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccC
Confidence 46777888775 78899999999876
Q ss_pred HH--HHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCC------CC------CHhHHHHHhcccCCCCCccEEEEE
Q 001261 752 DR--ESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDA------PN------HYEDYVHRVGRTGRAGRKGCAITF 817 (1112)
Q Consensus 752 ~R--~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~------p~------s~~~y~QriGR~gR~G~~g~~i~~ 817 (1112)
.+ ..++..|.+|+.+|||+|+++++|+|+|+|++|+.+|. |. ....|+|++||+||.+..|.+++.
T Consensus 298 ~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiq 377 (505)
T TIGR00595 298 KGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQ 377 (505)
T ss_pred ccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEE
Confidence 65 88999999999999999999999999999999865444 32 246789999999999999998865
Q ss_pred e
Q 001261 818 I 818 (1112)
Q Consensus 818 ~ 818 (1112)
.
T Consensus 378 t 378 (505)
T TIGR00595 378 T 378 (505)
T ss_pred e
Confidence 4
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=272.37 Aligned_cols=292 Identities=20% Similarity=0.292 Sum_probs=202.5
Q ss_pred CCChHHHHHHHHHHHc----CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001261 488 EKPMPIQAQALPVIMS----GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~----g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
..|+++|.+|+..+.. ++..+++.|||+|||++++..+... +..+||||||.+|+.||++.+..+
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~-----------~~~~Lvlv~~~~L~~Qw~~~~~~~ 103 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL-----------KRSTLVLVPTKELLDQWAEALKKF 103 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh-----------cCCEEEEECcHHHHHHHHHHHHHh
Confidence 4689999999999998 8999999999999999877666543 223999999999999998777665
Q ss_pred hhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHH
Q 001261 564 AKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ 643 (1112)
Q Consensus 564 ~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~ 643 (1112)
+... ..+..+||.... +.. ..|+|+|...+..... ........+++|||||||++.... ...+..
T Consensus 104 ~~~~--~~~g~~~~~~~~-----~~~-~~i~vat~qtl~~~~~---l~~~~~~~~~liI~DE~Hh~~a~~----~~~~~~ 168 (442)
T COG1061 104 LLLN--DEIGIYGGGEKE-----LEP-AKVTVATVQTLARRQL---LDEFLGNEFGLIIFDEVHHLPAPS----YRRILE 168 (442)
T ss_pred cCCc--cccceecCceec-----cCC-CcEEEEEhHHHhhhhh---hhhhcccccCEEEEEccccCCcHH----HHHHHH
Confidence 4321 123334443221 111 4699999998866410 011233479999999999976433 344444
Q ss_pred hcCCCCcEEEEeccccHHHHH---HHHHhcCCCeEEEEcCcccccCC----ccEE-EEe-c-------------------
Q 001261 644 NIRPDRQTVLFSATFPRQVEI---LARKVLNKPVEIQVGGRSVVNKD----ITQL-VEV-R------------------- 695 (1112)
Q Consensus 644 ~~~~~~q~il~SAT~~~~~~~---l~~~~~~~p~~i~i~~~~~~~~~----i~q~-~~~-~------------------- 695 (1112)
.+.....+|+||||++..... ....+++ |+.+.+.-....... .... +.+ .
T Consensus 169 ~~~~~~~~LGLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~ 247 (442)
T COG1061 169 LLSAAYPRLGLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELL 247 (442)
T ss_pred hhhcccceeeeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhh
Confidence 443333389999998743211 1111111 333332211111100 0000 000 0
Q ss_pred -----------------ccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHH
Q 001261 696 -----------------PESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTIS 758 (1112)
Q Consensus 696 -----------------~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~ 758 (1112)
....+...+..++.......++||||.+..++..++..|...++ +..++|..+..+|..+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~ 326 (442)
T COG1061 248 RARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILE 326 (442)
T ss_pred hhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHH
Confidence 00111122222222211245999999999999999999998888 899999999999999999
Q ss_pred HhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCC
Q 001261 759 DFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGR 807 (1112)
Q Consensus 759 ~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR 807 (1112)
.|+.|.+++||++.++..|+|+|+++++|...+..|...|+||+||+-|
T Consensus 327 ~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 327 RFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred HHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 9999999999999999999999999999999999999999999999999
|
|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-25 Score=266.47 Aligned_cols=322 Identities=20% Similarity=0.260 Sum_probs=226.0
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+|+ .|+++|.-+--++..| -|+.++||.|||++|++|++.+.+. |..|.||+|+..||.|..+++..++
T Consensus 79 lgm-~~ydVQliGgl~L~~G--~IaEm~TGEGKTL~a~lp~~l~al~--------g~~VhIvT~ndyLA~RD~e~m~~l~ 147 (908)
T PRK13107 79 FEM-RHFDVQLLGGMVLDSN--RIAEMRTGEGKTLTATLPAYLNALT--------GKGVHVITVNDYLARRDAENNRPLF 147 (908)
T ss_pred hCC-CcCchHHhcchHhcCC--ccccccCCCCchHHHHHHHHHHHhc--------CCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 443 5777777665555444 5889999999999999999977654 4559999999999999999999999
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHH-HHHHHhcCC-c--ccccCCceEEEeccchhhhc-cC------
Q 001261 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM-IDILCTSGG-K--ITNLRRVTYLVMDEADRMFD-MG------ 633 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L-~~~l~~~~~-~--~~~l~~i~~vViDEah~~~~-~g------ 633 (1112)
..+|+++.+++++.+....... -+++|+||||+.| .++|..+-. . ..-...+.++||||||.|+- ..
T Consensus 148 ~~lGlsv~~i~~~~~~~~r~~~--Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLII 225 (908)
T PRK13107 148 EFLGLTVGINVAGLGQQEKKAA--YNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLII 225 (908)
T ss_pred HhcCCeEEEecCCCCHHHHHhc--CCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceee
Confidence 9999999999999886443222 2589999999999 888865411 0 11236788999999997652 10
Q ss_pred ---------ChhHHHHHHHhcCC-------------------CCcEEEEe------------------------------
Q 001261 634 ---------FEPQITRIVQNIRP-------------------DRQTVLFS------------------------------ 655 (1112)
Q Consensus 634 ---------f~~~i~~il~~~~~-------------------~~q~il~S------------------------------ 655 (1112)
+...+..++..+.. ..+.|.||
T Consensus 226 Sg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~ 305 (908)
T PRK13107 226 SGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANIS 305 (908)
T ss_pred cCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhH
Confidence 11111112221110 11122222
Q ss_pred --------------------------------------------------------------------------------
Q 001261 656 -------------------------------------------------------------------------------- 655 (1112)
Q Consensus 656 -------------------------------------------------------------------------------- 655 (1112)
T Consensus 306 ~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~ 385 (908)
T PRK13107 306 LLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYE 385 (908)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhh
Confidence
Q ss_pred ------ccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcCC-eEEEEeCCHHHHH
Q 001261 656 ------ATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKG-KILIFVHSQEKCD 728 (1112)
Q Consensus 656 ------AT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~-~vLIF~~s~~~~~ 728 (1112)
+|.......| ..+++-++.+.+...+........ .++.....|+..++..+......| ++||||+|+..++
T Consensus 386 kL~GMTGTa~te~~Ef-~~iY~l~Vv~IPTnkp~~R~d~~d-~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se 463 (908)
T PRK13107 386 KLAGMTGTADTEAFEF-QHIYGLDTVVVPTNRPMVRKDMAD-LVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSE 463 (908)
T ss_pred HhhcccCCChHHHHHH-HHHhCCCEEECCCCCCccceeCCC-cEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHH
Confidence 1111111111 111111111111111111111111 123344678888888887765544 8999999999999
Q ss_pred HHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCC---------------------------
Q 001261 729 ALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVK--------------------------- 781 (1112)
Q Consensus 729 ~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~--------------------------- 781 (1112)
.|+..|...|+++..+|+.+++.++..+...|+.|. |+|||++|+||+||.
T Consensus 464 ~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~ 541 (908)
T PRK13107 464 LLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADW 541 (908)
T ss_pred HHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHH
Confidence 999999999999999999999999999999999998 999999999999997
Q ss_pred ----------CccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCcc
Q 001261 782 ----------ELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823 (1112)
Q Consensus 782 ----------~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~ 823 (1112)
+=-+||--..+.|---=.|-.||+||-|.+|.+..|++-+|.
T Consensus 542 ~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 542 QIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 234677777788877778999999999999999999987665
|
|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=270.54 Aligned_cols=327 Identities=22% Similarity=0.290 Sum_probs=218.3
Q ss_pred CChHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 489 KPMPIQAQALPVIM----SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il----~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
.+.|+|.+++.+++ .|..+|++.++|.|||++.+..+ .++.... +....+|||||. .|..||..+|.+|+
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL-~~L~~~~----~~~gp~LIVvP~-SlL~nW~~Ei~kw~ 242 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLL-GYLHEYR----GITGPHMVVAPK-STLGNWMNEIRRFC 242 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHH-HHHHHhc----CCCCCEEEEeCh-HHHHHHHHHHHHHC
Confidence 67899999999986 57889999999999999765444 3333211 122347999996 56689999999997
Q ss_pred hhcCceEEEEeCCCChHHHHH-H-H-hcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHH
Q 001261 565 KVMGVRCVPVYGGSGVAQQIS-E-L-KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRI 641 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~-~-l-~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~i 641 (1112)
.. +.++.++|.......+. . + ....+|||+|++.+...... +.--.+.+|||||||++-+. ...+..+
T Consensus 243 p~--l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~-----L~k~~W~~VIvDEAHrIKN~--~Sklska 313 (1033)
T PLN03142 243 PV--LRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA-----LKRFSWRYIIIDEAHRIKNE--NSLLSKT 313 (1033)
T ss_pred CC--CceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH-----hccCCCCEEEEcCccccCCH--HHHHHHH
Confidence 53 45555555433222211 1 1 23578999999988654321 12235789999999998753 3345555
Q ss_pred HHhcCCCCcEEEEeccccH----HHHHHHHHhc-----------------------------------------------
Q 001261 642 VQNIRPDRQTVLFSATFPR----QVEILARKVL----------------------------------------------- 670 (1112)
Q Consensus 642 l~~~~~~~q~il~SAT~~~----~~~~l~~~~~----------------------------------------------- 670 (1112)
+..+.. ...+++|+|+-. .+..++..++
T Consensus 314 lr~L~a-~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~ 392 (1033)
T PLN03142 314 MRLFST-NYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEK 392 (1033)
T ss_pred HHHhhc-CcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhh
Confidence 666643 346889999631 1111111100
Q ss_pred --CCCeE--EEEcCcc--------c-------ccC--------C-ccE---E-------------------EEecccchh
Q 001261 671 --NKPVE--IQVGGRS--------V-------VNK--------D-ITQ---L-------------------VEVRPESDR 700 (1112)
Q Consensus 671 --~~p~~--i~i~~~~--------~-------~~~--------~-i~q---~-------------------~~~~~~~~k 700 (1112)
..... +.+.-.. . ... + +.+ . ..+...+.|
T Consensus 393 ~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgK 472 (1033)
T PLN03142 393 GLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGK 472 (1033)
T ss_pred hCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhH
Confidence 00000 1110000 0 000 0 000 0 000112345
Q ss_pred HHHHHHHHHhhhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcC---CccEEEecCcccc
Q 001261 701 FLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN---VCNLLIATSVAAR 776 (1112)
Q Consensus 701 ~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g---~~~VLVaT~v~~~ 776 (1112)
+..|..+|..... +.+|||||.....++.|..+|...|+.++.|||+++..+|..++..|.+. .+.+||+|.+++.
T Consensus 473 l~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGl 552 (1033)
T PLN03142 473 MVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGL 552 (1033)
T ss_pred HHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEecccccc
Confidence 6666666655443 45999999999999999999999999999999999999999999999753 3467999999999
Q ss_pred cCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEE--EEecCC--ccCchHHHHH
Q 001261 777 GLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAI--TFISEE--DAKYSPDLVK 831 (1112)
Q Consensus 777 GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i--~~~~~~--d~~~~~~i~~ 831 (1112)
|||+..+++||+||+||++..+.|++||+.|.|+...|+ .|++.. +...+....+
T Consensus 553 GINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~ 611 (1033)
T PLN03142 553 GINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYK 611 (1033)
T ss_pred CCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHH
Confidence 999999999999999999999999999999999886654 455543 3334443333
|
|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=277.12 Aligned_cols=306 Identities=17% Similarity=0.216 Sum_probs=198.6
Q ss_pred CCChHHHHHHHHHHH----c-CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH
Q 001261 488 EKPMPIQAQALPVIM----S-GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il----~-g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~ 562 (1112)
..|+++|..||..+. . .+.+|++++||||||.+++..+.. +... +...++|||||+.+|+.|+...|..
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~-L~~~-----~~~~rVLfLvDR~~L~~Qa~~~F~~ 485 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYR-LLKA-----KRFRRILFLVDRSALGEQAEDAFKD 485 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHH-HHhc-----CccCeEEEEecHHHHHHHHHHHHHh
Confidence 358999999998876 2 367999999999999875544443 3322 2346899999999999999999988
Q ss_pred HhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcC--CcccccCCceEEEeccchhhhc---------
Q 001261 563 FAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSG--GKITNLRRVTYLVMDEADRMFD--------- 631 (1112)
Q Consensus 563 ~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~--~~~~~l~~i~~vViDEah~~~~--------- 631 (1112)
+....+..+..+++....... .......|+|+|+..|...+.... .....+..+++|||||||+...
T Consensus 486 ~~~~~~~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~ 563 (1123)
T PRK11448 486 TKIEGDQTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGE 563 (1123)
T ss_pred cccccccchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccch
Confidence 632222112122221111111 112347899999999877653321 1123567889999999998531
Q ss_pred cC------ChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcC----ccccc-----CCccE------
Q 001261 632 MG------FEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGG----RSVVN-----KDITQ------ 690 (1112)
Q Consensus 632 ~g------f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~----~~~~~-----~~i~q------ 690 (1112)
.+ +...+..++.++. ...|+||||+..... .+++.|+...--. .+... ..+..
T Consensus 564 ~~~~~~~~~~~~yr~iL~yFd--A~~IGLTATP~r~t~----~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~g 637 (1123)
T PRK11448 564 LQFRDQLDYVSKYRRVLDYFD--AVKIGLTATPALHTT----EIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEG 637 (1123)
T ss_pred hccchhhhHHHHHHHHHhhcC--ccEEEEecCCccchh----HHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEecccc
Confidence 11 2356777777653 468999999864322 2223333211000 00000 00000
Q ss_pred -----------------EE--Eecccc-----h----------hHHHHHHHHHhhh---cCCeEEEEeCCHHHHHHHHHH
Q 001261 691 -----------------LV--EVRPES-----D----------RFLRLLELLGEWY---EKGKILIFVHSQEKCDALFRD 733 (1112)
Q Consensus 691 -----------------~~--~~~~~~-----~----------k~~~ll~~l~~~~---~~~~vLIF~~s~~~~~~l~~~ 733 (1112)
.+ ...+.. . ....++..|.... ..+++||||.++.+|+.++..
T Consensus 638 i~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~ 717 (1123)
T PRK11448 638 IHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRL 717 (1123)
T ss_pred ccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHH
Confidence 00 000000 0 0011122222222 237999999999999999988
Q ss_pred HHhc------CC---CeeeecCCCCHHHHHHHHHHhhcCCc-cEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhc
Q 001261 734 LLKH------GY---PCLSLHGAKDQTDRESTISDFKSNVC-NLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVG 803 (1112)
Q Consensus 734 L~~~------g~---~~~~ihg~~~~~~R~~~~~~F~~g~~-~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriG 803 (1112)
|... ++ .|..+||+++ ++..++..|+++.. .|||+++++.+|+|+|.|.+||++.++.|...|+|++|
T Consensus 718 L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIG 795 (1123)
T PRK11448 718 LKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLG 795 (1123)
T ss_pred HHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHh
Confidence 7653 22 4667999886 46789999999886 69999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 001261 804 RTGRAG 809 (1112)
Q Consensus 804 R~gR~G 809 (1112)
|+.|..
T Consensus 796 RgtR~~ 801 (1123)
T PRK11448 796 RATRLC 801 (1123)
T ss_pred hhccCC
Confidence 999963
|
|
| >KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.2e-25 Score=253.51 Aligned_cols=306 Identities=21% Similarity=0.258 Sum_probs=204.3
Q ss_pred HHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEE-
Q 001261 495 AQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVP- 573 (1112)
Q Consensus 495 ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~- 573 (1112)
++.+.+|..+--|||||+||||||++.-..++..=..+... .++..+-|.-|.|..|..+...+..-+..++-.|..
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~--~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYq 339 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQS--SSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQ 339 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccC--CCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEE
Confidence 45556666777789999999999986544444432222211 122355566799999887765544332223333332
Q ss_pred -EeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccch-hhhccCChhHHH-HHH---HhcCC
Q 001261 574 -VYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD-RMFDMGFEPQIT-RIV---QNIRP 647 (1112)
Q Consensus 574 -~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah-~~~~~gf~~~i~-~il---~~~~~ 647 (1112)
-|.|+ +...+.|.++|.|.|+..+.+. +.|..|+.||||||| |..+.+..-.+. +|+ ..+..
T Consensus 340 IRfd~t--------i~e~T~IkFMTDGVLLrEi~~D----flL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~k 407 (1172)
T KOG0926|consen 340 IRFDGT--------IGEDTSIKFMTDGVLLREIEND----FLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYK 407 (1172)
T ss_pred EEeccc--------cCCCceeEEecchHHHHHHHHh----HhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhh
Confidence 23333 2345899999999999988764 678999999999999 655544333222 222 11111
Q ss_pred ------CCcEEEEeccccHHHHHHH--HHhcC-CCeEEEEcCcccccCCccEEEEecccchhHH----HHHHHHHhhhcC
Q 001261 648 ------DRQTVLFSATFPRQVEILA--RKVLN-KPVEIQVGGRSVVNKDITQLVEVRPESDRFL----RLLELLGEWYEK 714 (1112)
Q Consensus 648 ------~~q~il~SAT~~~~~~~l~--~~~~~-~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~----~ll~~l~~~~~~ 714 (1112)
...+|+||||+ .+..|. +.++. -|-.|.+..+.++ +.-+|.-....+.+. ..+. |++.++.
T Consensus 408 e~~~~kpLKLIIMSATL--RVsDFtenk~LFpi~pPlikVdARQfP---VsIHF~krT~~DYi~eAfrKtc~-IH~kLP~ 481 (1172)
T KOG0926|consen 408 EQCQIKPLKLIIMSATL--RVSDFTENKRLFPIPPPLIKVDARQFP---VSIHFNKRTPDDYIAEAFRKTCK-IHKKLPP 481 (1172)
T ss_pred hhcccCceeEEEEeeeE--EecccccCceecCCCCceeeeecccCc---eEEEeccCCCchHHHHHHHHHHH-HhhcCCC
Confidence 34689999997 333333 12222 2224555544443 333343333333332 3333 3344578
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhc---------------------------------------------------------
Q 001261 715 GKILIFVHSQEKCDALFRDLLKH--------------------------------------------------------- 737 (1112)
Q Consensus 715 ~~vLIF~~s~~~~~~l~~~L~~~--------------------------------------------------------- 737 (1112)
|.||||+..+.+++.|+..|++.
T Consensus 482 G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~ 561 (1172)
T KOG0926|consen 482 GGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGF 561 (1172)
T ss_pred CcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccc
Confidence 99999999999999999999653
Q ss_pred ------------------------------------------CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCccc
Q 001261 738 ------------------------------------------GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA 775 (1112)
Q Consensus 738 ------------------------------------------g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~ 775 (1112)
.+-|+++++=++...+.+++..-..|..-|+|||+||+
T Consensus 562 ~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAE 641 (1172)
T KOG0926|consen 562 ASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAE 641 (1172)
T ss_pred hhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchh
Confidence 12367788888999999999999999999999999999
Q ss_pred ccCCCCCccEEEEeCC--------CC----------CHhHHHHHhcccCCCCCccEEEEEecCC
Q 001261 776 RGLDVKELELVINFDA--------PN----------HYEDYVHRVGRTGRAGRKGCAITFISEE 821 (1112)
Q Consensus 776 ~GlDi~~v~~VI~~d~--------p~----------s~~~y~QriGR~gR~G~~g~~i~~~~~~ 821 (1112)
+.|.||+|.+||+.+. -. |.+..-||+|||||+| .|.||.||+..
T Consensus 642 TSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 642 TSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred cccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhH
Confidence 9999999999997443 22 3455569999999998 99999999753
|
|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-23 Score=220.17 Aligned_cols=299 Identities=19% Similarity=0.209 Sum_probs=208.6
Q ss_pred CChHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 489 KPMPIQAQALPVIM----SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il----~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
++||.|..+-..++ +..+.|+.|-||+|||.. +.+.+..+..+ |..+.|..|....|..++..++..+
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~~-------G~~vciASPRvDVclEl~~Rlk~aF 168 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALNQ-------GGRVCIASPRVDVCLELYPRLKQAF 168 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHhc-------CCeEEEecCcccchHHHHHHHHHhh
Confidence 78899987766554 668999999999999975 44455554443 7788999999999999999888865
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHh
Q 001261 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQN 644 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~ 644 (1112)
. ++.+.++||++...- . ..+||+|...|+.+- +.+++|||||+|.+--..-......+-..
T Consensus 169 ~--~~~I~~Lyg~S~~~f------r-~plvVaTtHQLlrFk----------~aFD~liIDEVDAFP~~~d~~L~~Av~~a 229 (441)
T COG4098 169 S--NCDIDLLYGDSDSYF------R-APLVVATTHQLLRFK----------QAFDLLIIDEVDAFPFSDDQSLQYAVKKA 229 (441)
T ss_pred c--cCCeeeEecCCchhc------c-ccEEEEehHHHHHHH----------hhccEEEEeccccccccCCHHHHHHHHHh
Confidence 4 467788999885432 2 678999988887664 24789999999975422222222233445
Q ss_pred cCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccc-hhH------HHHHHHHHhhhcC-Ce
Q 001261 645 IRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPES-DRF------LRLLELLGEWYEK-GK 716 (1112)
Q Consensus 645 ~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~-~k~------~~ll~~l~~~~~~-~~ 716 (1112)
.....-+|++|||++..++.-+...-. ..+.+..+.-..+-....+.+...- .++ ..|+.+|...... .+
T Consensus 230 rk~~g~~IylTATp~k~l~r~~~~g~~--~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P 307 (441)
T COG4098 230 RKKEGATIYLTATPTKKLERKILKGNL--RILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRP 307 (441)
T ss_pred hcccCceEEEecCChHHHHHHhhhCCe--eEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCc
Confidence 556677999999999876544332221 2223322221111122222232222 222 2566677665543 48
Q ss_pred EEEEeCCHHHHHHHHHHHHh-cC-CCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCC--
Q 001261 717 ILIFVHSQEKCDALFRDLLK-HG-YPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAP-- 792 (1112)
Q Consensus 717 vLIF~~s~~~~~~l~~~L~~-~g-~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p-- 792 (1112)
+|||++++..++.++..|.. .+ ..+..+|+.. ..|.+..+.|++|.++|||+|.+++||+.+|+|+++|.-.--
T Consensus 308 ~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~v 385 (441)
T COG4098 308 VLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRV 385 (441)
T ss_pred EEEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCccc
Confidence 99999999999999999954 33 3457788754 478889999999999999999999999999999998753222
Q ss_pred CCHhHHHHHhcccCCCC--CccEEEEEe
Q 001261 793 NHYEDYVHRVGRTGRAG--RKGCAITFI 818 (1112)
Q Consensus 793 ~s~~~y~QriGR~gR~G--~~g~~i~~~ 818 (1112)
.+-+..+|..||+||.- ..|.++.|.
T Consensus 386 fTesaLVQIaGRvGRs~~~PtGdv~FFH 413 (441)
T COG4098 386 FTESALVQIAGRVGRSLERPTGDVLFFH 413 (441)
T ss_pred ccHHHHHHHhhhccCCCcCCCCcEEEEe
Confidence 36788999999999952 356666443
|
|
| >KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.7e-24 Score=247.82 Aligned_cols=320 Identities=19% Similarity=0.251 Sum_probs=235.8
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
.+| .|-++|++||-++..|..|+|.|+|.+|||+++-.++.... .++.++++..|-.+|-+|-+..|+.-+
T Consensus 294 ~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq--------~h~TR~iYTSPIKALSNQKfRDFk~tF 364 (1248)
T KOG0947|consen 294 YPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ--------KHMTRTIYTSPIKALSNQKFRDFKETF 364 (1248)
T ss_pred CCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH--------hhccceEecchhhhhccchHHHHHHhc
Confidence 444 57899999999999999999999999999998766654331 246789999999999999999988866
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHh
Q 001261 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQN 644 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~ 644 (1112)
...| +++|.. ++...+.++|||.+.|..+|.++.+ .++++.+||+||+|.+-|...+..+..++-.
T Consensus 365 ~Dvg----LlTGDv-------qinPeAsCLIMTTEILRsMLYrgad---liRDvE~VIFDEVHYiND~eRGvVWEEViIM 430 (1248)
T KOG0947|consen 365 GDVG----LLTGDV-------QINPEASCLIMTTEILRSMLYRGAD---LIRDVEFVIFDEVHYINDVERGVVWEEVIIM 430 (1248)
T ss_pred cccc----eeecce-------eeCCCcceEeehHHHHHHHHhcccc---hhhccceEEEeeeeecccccccccceeeeee
Confidence 6544 567766 3456689999999999999988653 4677999999999999998888889999999
Q ss_pred cCCCCcEEEEeccccHHHHHHHHHhcC---CCeEEEEc-CcccccCCccEEEEe--------------------------
Q 001261 645 IRPDRQTVLFSATFPRQVEILARKVLN---KPVEIQVG-GRSVVNKDITQLVEV-------------------------- 694 (1112)
Q Consensus 645 ~~~~~q~il~SAT~~~~~~~l~~~~~~---~p~~i~i~-~~~~~~~~i~q~~~~-------------------------- 694 (1112)
+++..++|++|||.|+..+ |+.++.. ..+.++-. .++++ +.+++..
T Consensus 431 lP~HV~~IlLSATVPN~~E-FA~WIGRtK~K~IyViST~kRPVP---LEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~ 506 (1248)
T KOG0947|consen 431 LPRHVNFILLSATVPNTLE-FADWIGRTKQKTIYVISTSKRPVP---LEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSL 506 (1248)
T ss_pred ccccceEEEEeccCCChHH-HHHHhhhccCceEEEEecCCCccc---eEEEEEeccceehhhcccchhhhhcchhhhhhh
Confidence 9999999999999998765 5555432 22222211 11110 0000000
Q ss_pred -------------------------------c------ccchhH--HHHHHHHHhhhcC--CeEEEEeCCHHHHHHHHHH
Q 001261 695 -------------------------------R------PESDRF--LRLLELLGEWYEK--GKILIFVHSQEKCDALFRD 733 (1112)
Q Consensus 695 -------------------------------~------~~~~k~--~~ll~~l~~~~~~--~~vLIF~~s~~~~~~l~~~ 733 (1112)
. ....+. ...+.+|...... -++||||-++..|+..+.+
T Consensus 507 ~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~ 586 (1248)
T KOG0947|consen 507 KKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADY 586 (1248)
T ss_pred cccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHH
Confidence 0 000011 1233333332222 3899999999999999999
Q ss_pred HHhc---------------------------------------CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcc
Q 001261 734 LLKH---------------------------------------GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVA 774 (1112)
Q Consensus 734 L~~~---------------------------------------g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~ 774 (1112)
|... .-.++++|||+-+--++-+.-.|..|-++||+||..+
T Consensus 587 L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETF 666 (1248)
T KOG0947|consen 587 LTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETF 666 (1248)
T ss_pred HhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhh
Confidence 8643 1246789999999999999999999999999999999
Q ss_pred cccCCCCCccEEEEeCCC---------CCHhHHHHHhcccCCCCC--ccEEEEEecCCccCchHHHHHHH
Q 001261 775 ARGLDVKELELVINFDAP---------NHYEDYVHRVGRTGRAGR--KGCAITFISEEDAKYSPDLVKAL 833 (1112)
Q Consensus 775 ~~GlDi~~v~~VI~~d~p---------~s~~~y~QriGR~gR~G~--~g~~i~~~~~~d~~~~~~i~~~l 833 (1112)
++|||.|.-.+|+. .+- -.+-.|.|++|||||-|- .|++|++.... ..-...+.+.+
T Consensus 667 AMGVNMPARtvVF~-Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~-vp~~a~l~~li 734 (1248)
T KOG0947|consen 667 AMGVNMPARTVVFS-SLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS-VPSAATLKRLI 734 (1248)
T ss_pred hhhcCCCceeEEee-ehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC-CCCHHHHhhHh
Confidence 99999998777774 221 247899999999999875 57777666543 44555555554
|
|
| >KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-24 Score=246.12 Aligned_cols=308 Identities=20% Similarity=0.284 Sum_probs=234.5
Q ss_pred CChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcC
Q 001261 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMG 568 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~ 568 (1112)
.+-|+|.+||..|-.+..||+.|.|.+|||.++-.++...+.. ..+|++..|-.+|.+|-|.++..-++..|
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~--------kQRVIYTSPIKALSNQKYREl~~EF~DVG 200 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE--------KQRVIYTSPIKALSNQKYRELLEEFKDVG 200 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh--------cCeEEeeChhhhhcchhHHHHHHHhcccc
Confidence 4679999999999999999999999999999988888777654 56799999999999999999988666554
Q ss_pred ceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCCC
Q 001261 569 VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD 648 (1112)
Q Consensus 569 i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~ 648 (1112)
+.+|... +...+..+|+|.+.|..+|.+++ --++.+.+||+||+|.|-|...+..+..-+-.++.+
T Consensus 201 ----LMTGDVT-------InP~ASCLVMTTEILRsMLYRGS---EvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~ 266 (1041)
T KOG0948|consen 201 ----LMTGDVT-------INPDASCLVMTTEILRSMLYRGS---EVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDN 266 (1041)
T ss_pred ----eeeccee-------eCCCCceeeeHHHHHHHHHhccc---hHhheeeeEEeeeehhccccccceeeeeeEEecccc
Confidence 4555553 33557899999999999998765 357889999999999999988777888888888999
Q ss_pred CcEEEEeccccHHHHHHHHHh---cCCCeEEEEcCcccccCCccEE---------EEeccc-----chhHHHHHHHHHh-
Q 001261 649 RQTVLFSATFPRQVEILARKV---LNKPVEIQVGGRSVVNKDITQL---------VEVRPE-----SDRFLRLLELLGE- 710 (1112)
Q Consensus 649 ~q~il~SAT~~~~~~~l~~~~---~~~p~~i~i~~~~~~~~~i~q~---------~~~~~~-----~~k~~~ll~~l~~- 710 (1112)
...|++|||+|+..+ |+.++ -..|+.+..... .+.++.++ +.+.+. .+.|...+..|..
T Consensus 267 vr~VFLSATiPNA~q-FAeWI~~ihkQPcHVVYTdy--RPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~ 343 (1041)
T KOG0948|consen 267 VRFVFLSATIPNARQ-FAEWICHIHKQPCHVVYTDY--RPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKA 343 (1041)
T ss_pred ceEEEEeccCCCHHH-HHHHHHHHhcCCceEEeecC--CCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhcc
Confidence 999999999998654 55544 456755443221 11122222 112221 1233333332221
Q ss_pred ----------------------------------hh--cCCeEEEEeCCHHHHHHHHHHHHhcC----------------
Q 001261 711 ----------------------------------WY--EKGKILIFVHSQEKCDALFRDLLKHG---------------- 738 (1112)
Q Consensus 711 ----------------------------------~~--~~~~vLIF~~s~~~~~~l~~~L~~~g---------------- 738 (1112)
.. ...++|||+-++++|+.++-.+.+..
T Consensus 344 ~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~n 423 (1041)
T KOG0948|consen 344 GESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNN 423 (1041)
T ss_pred CCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHH
Confidence 11 12489999999999999988876541
Q ss_pred -----------------------CCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEE----eCC
Q 001261 739 -----------------------YPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN----FDA 791 (1112)
Q Consensus 739 -----------------------~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~----~d~ 791 (1112)
-.+.++|||+-+-.++-+.-.|..|-++||+||..++.|||.|.-++|+- ||-
T Consensus 424 Ai~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG 503 (1041)
T KOG0948|consen 424 AIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDG 503 (1041)
T ss_pred HHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCC
Confidence 14678999999999999999999999999999999999999998877764 222
Q ss_pred C----CCHhHHHHHhcccCCCCC--ccEEEEEecCC
Q 001261 792 P----NHYEDYVHRVGRTGRAGR--KGCAITFISEE 821 (1112)
Q Consensus 792 p----~s~~~y~QriGR~gR~G~--~g~~i~~~~~~ 821 (1112)
- .+.-.|+|+.|||||-|. .|.||+++++.
T Consensus 504 ~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 504 KKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred cceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 1 256789999999999885 58999998754
|
|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-23 Score=255.00 Aligned_cols=315 Identities=19% Similarity=0.258 Sum_probs=232.7
Q ss_pred HHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH
Q 001261 483 RKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 483 ~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~ 562 (1112)
..++| .|-++|++++-.|..|..|+++||||||||++...++...+.. |.++++.+|.++|.+|.|..+..
T Consensus 114 ~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~--------~qrviYTsPIKALsNQKyrdl~~ 184 (1041)
T COG4581 114 REYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD--------GQRVIYTSPIKALSNQKYRDLLA 184 (1041)
T ss_pred HhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc--------CCceEeccchhhhhhhHHHHHHH
Confidence 34555 5789999999999999999999999999999988888776554 55699999999999999999887
Q ss_pred HhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHH
Q 001261 563 FAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIV 642 (1112)
Q Consensus 563 ~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il 642 (1112)
.+....--+.+++|... +..++.|+|+|.+.|..++...+ ..+..+.+||+||+|.|.|..-+..+..++
T Consensus 185 ~fgdv~~~vGL~TGDv~-------IN~~A~clvMTTEILRnMlyrg~---~~~~~i~~ViFDEvHyi~D~eRG~VWEE~I 254 (1041)
T COG4581 185 KFGDVADMVGLMTGDVS-------INPDAPCLVMTTEILRNMLYRGS---ESLRDIEWVVFDEVHYIGDRERGVVWEEVI 254 (1041)
T ss_pred Hhhhhhhhccceeccee-------eCCCCceEEeeHHHHHHHhccCc---ccccccceEEEEeeeeccccccchhHHHHH
Confidence 65543112344556553 34568999999999999998764 567889999999999999999999999999
Q ss_pred HhcCCCCcEEEEeccccHHHHHHHHHhc---CCCeEEEEcCcccccCCccEEE-------Eecccchh------------
Q 001261 643 QNIRPDRQTVLFSATFPRQVEILARKVL---NKPVEIQVGGRSVVNKDITQLV-------EVRPESDR------------ 700 (1112)
Q Consensus 643 ~~~~~~~q~il~SAT~~~~~~~l~~~~~---~~p~~i~i~~~~~~~~~i~q~~-------~~~~~~~k------------ 700 (1112)
-.++...++|+||||+|+..+ |..++. ..|+.+.....- +.++.+++ .+.+...+
T Consensus 255 i~lP~~v~~v~LSATv~N~~E-F~~Wi~~~~~~~~~vv~t~~R--pvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~ 331 (1041)
T COG4581 255 ILLPDHVRFVFLSATVPNAEE-FAEWIQRVHSQPIHVVSTEHR--PVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRS 331 (1041)
T ss_pred HhcCCCCcEEEEeCCCCCHHH-HHHHHHhccCCCeEEEeecCC--CCCeEEEEecCCceeeeecccccchhhcchhhhhh
Confidence 999999999999999987643 444433 445443332211 11111111 11111111
Q ss_pred -----------------------------------HHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhc--------
Q 001261 701 -----------------------------------FLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH-------- 737 (1112)
Q Consensus 701 -----------------------------------~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~-------- 737 (1112)
...++..|.. ...-++|+||-++..|+.++..|...
T Consensus 332 l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~-~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~ 410 (1041)
T COG4581 332 LSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDK-DNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEK 410 (1041)
T ss_pred hhccchhccccCccccccccccccccCCcccccccchHHHhhhhh-hcCCceEEEEEchhhHHHHHHHhcccccccCCcH
Confidence 0011111111 11238999999999998887777521
Q ss_pred --------------------CC-------------CeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCcc
Q 001261 738 --------------------GY-------------PCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELE 784 (1112)
Q Consensus 738 --------------------g~-------------~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~ 784 (1112)
++ .+.++|+||-+..+..+...|..|-++||+||.+++.|||.|.-+
T Consensus 411 e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPart 490 (1041)
T COG4581 411 ERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPART 490 (1041)
T ss_pred HHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccc
Confidence 22 245789999999999999999999999999999999999999877
Q ss_pred EEEE----eCC----CCCHhHHHHHhcccCCCCC--ccEEEEEecC
Q 001261 785 LVIN----FDA----PNHYEDYVHRVGRTGRAGR--KGCAITFISE 820 (1112)
Q Consensus 785 ~VI~----~d~----p~s~~~y~QriGR~gR~G~--~g~~i~~~~~ 820 (1112)
+|+- ++- +-++..|.|+.||+||-|. .|.+|+.-.+
T Consensus 491 vv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 491 VVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred eeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 7762 221 3368899999999999886 4888877443
|
|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-23 Score=215.31 Aligned_cols=165 Identities=36% Similarity=0.619 Sum_probs=142.0
Q ss_pred hHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCce
Q 001261 491 MPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVR 570 (1112)
Q Consensus 491 t~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~ 570 (1112)
||+|.++|+.++.|+++|++||||+|||++|++|++..+... ....+||++|+++|+.|++..+..++...++.
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~------~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~ 74 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG------KDARVLIIVPTRALAEQQFERLRKFFSNTNVR 74 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT------SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSS
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC------CCceEEEEeecccccccccccccccccccccc
Confidence 799999999999999999999999999999999999988763 23489999999999999999999999888889
Q ss_pred EEEEeCCCChH-HHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCC--
Q 001261 571 CVPVYGGSGVA-QQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP-- 647 (1112)
Q Consensus 571 ~~~~~gg~~~~-~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~-- 647 (1112)
+..++|+.... .....+..+++|+|+||++|.+++... .. ++.++++|||||+|.+...++...+..|+..+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~--~~-~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~ 151 (169)
T PF00270_consen 75 VVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNG--KI-NISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFK 151 (169)
T ss_dssp EEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTT--SS-TGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTT
T ss_pred cccccccccccccccccccccccccccCcchhhcccccc--cc-ccccceeeccCcccccccccHHHHHHHHHHHhcCCC
Confidence 99999999866 444555567999999999999998762 23 5667999999999999988888889888888743
Q ss_pred CCcEEEEeccccHHHHH
Q 001261 648 DRQTVLFSATFPRQVEI 664 (1112)
Q Consensus 648 ~~q~il~SAT~~~~~~~ 664 (1112)
..|+|++|||+++.++.
T Consensus 152 ~~~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 152 NIQIILLSATLPSNVEK 168 (169)
T ss_dssp TSEEEEEESSSTHHHHH
T ss_pred CCcEEEEeeCCChhHhh
Confidence 58999999999976654
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-23 Score=244.87 Aligned_cols=342 Identities=23% Similarity=0.271 Sum_probs=241.9
Q ss_pred CCCHHHHH-HHHHCCCCCChHHHHHHH--HHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccc
Q 001261 473 GLTSKIME-TIRKLNYEKPMPIQAQAL--PVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT 549 (1112)
Q Consensus 473 ~L~~~l~~-~l~~~~~~~pt~iQ~~ai--~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Pt 549 (1112)
.+++.+.. ..+..|+.+++.+|..++ |.++.++++|...||+.|||+++-+-|+..+... ...++++.|.
T Consensus 206 ~~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~-------rr~~llilp~ 278 (1008)
T KOG0950|consen 206 RLPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR-------RRNVLLILPY 278 (1008)
T ss_pred cCchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH-------hhceeEecce
Confidence 34444444 445689999999999987 6688999999999999999999999998877653 4568899999
Q ss_pred hhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhh
Q 001261 550 RELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRM 629 (1112)
Q Consensus 550 reLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~ 629 (1112)
...+..-...+..|+..+|+.+-+.+|..+.... .+...|.|||.++-..++... ...-.+..+++|||||.|.+
T Consensus 279 vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~l-ie~g~~~~~g~vvVdElhmi 353 (1008)
T KOG0950|consen 279 VSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSL-IEQGRLDFLGMVVVDELHMI 353 (1008)
T ss_pred eehhHHHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHH-HhcCCccccCcEEEeeeeee
Confidence 8888888888889999999998887766544322 234689999998754443321 11135778999999999999
Q ss_pred hccCChhHHHHHHHhc-----CCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccC-------CccEE------
Q 001261 630 FDMGFEPQITRIVQNI-----RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNK-------DITQL------ 691 (1112)
Q Consensus 630 ~~~gf~~~i~~il~~~-----~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~-------~i~q~------ 691 (1112)
.+.+.+..+..++..+ ....|+|+||||+|+.- ++..++..-++.+ ..+++... .+...
T Consensus 354 ~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~--lL~~~L~A~~y~t-~fRPv~L~E~ik~G~~i~~~~r~~~l 430 (1008)
T KOG0950|consen 354 GDKGRGAILELLLAKILYENLETSVQIIGMSATIPNNS--LLQDWLDAFVYTT-RFRPVPLKEYIKPGSLIYESSRNKVL 430 (1008)
T ss_pred eccccchHHHHHHHHHHHhccccceeEeeeecccCChH--HHHHHhhhhheec-ccCcccchhccCCCcccccchhhHHH
Confidence 9999888877776544 33467999999998642 2333333222111 00111000 00000
Q ss_pred ---E----EecccchhHHHHHHHHHhhhcCC-eEEEEeCCHHHHHHHHHHHHhc--------------------------
Q 001261 692 ---V----EVRPESDRFLRLLELLGEWYEKG-KILIFVHSQEKCDALFRDLLKH-------------------------- 737 (1112)
Q Consensus 692 ---~----~~~~~~~k~~~ll~~l~~~~~~~-~vLIF~~s~~~~~~l~~~L~~~-------------------------- 737 (1112)
. ......+- ..++.++.+..+.+ ++||||+++..|+.++..+...
T Consensus 431 r~ia~l~~~~~g~~dp-D~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~ 509 (1008)
T KOG0950|consen 431 REIANLYSSNLGDEDP-DHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRI 509 (1008)
T ss_pred HHhhhhhhhhcccCCC-cceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcC
Confidence 0 00000000 12222222223334 6999999999999887665331
Q ss_pred ------------CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEe---CC-CCCHhHHHHH
Q 001261 738 ------------GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINF---DA-PNHYEDYVHR 801 (1112)
Q Consensus 738 ------------g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~---d~-p~s~~~y~Qr 801 (1112)
.+.+.++|.|++.++|..+...|+.|.+.||+||+.++.|+|+|...++|-+ +. +.+...|.|+
T Consensus 510 ~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM 589 (1008)
T KOG0950|consen 510 PGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQM 589 (1008)
T ss_pred CcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhh
Confidence 3568899999999999999999999999999999999999999999988853 22 3467899999
Q ss_pred hcccCCCCC--ccEEEEEecCCccCchHHHH
Q 001261 802 VGRTGRAGR--KGCAITFISEEDAKYSPDLV 830 (1112)
Q Consensus 802 iGR~gR~G~--~g~~i~~~~~~d~~~~~~i~ 830 (1112)
+|||||+|- .|.+|+++.+.+......++
T Consensus 590 ~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv 620 (1008)
T KOG0950|consen 590 VGRAGRTGIDTLGDSILIIKSSEKKRVRELV 620 (1008)
T ss_pred hhhhhhcccccCcceEEEeeccchhHHHHHH
Confidence 999999974 58999999988876555444
|
|
| >KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-22 Score=244.39 Aligned_cols=313 Identities=20% Similarity=0.272 Sum_probs=230.5
Q ss_pred ChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH-HhhhcC
Q 001261 490 PMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK-FAKVMG 568 (1112)
Q Consensus 490 pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~-~~~~~~ 568 (1112)
-+..+.+.|.+|...+.+||.|+||||||++.-..+|.+..... ....+++--|.|--|.-+++.+.. .+...|
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~-----~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g 248 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG-----AACNIICTQPRRISAISVAERVAKERGESLG 248 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC-----CCCeEEecCCchHHHHHHHHHHHHHhccccC
Confidence 45778889999999999999999999999988888887765532 233455555999888877766544 233334
Q ss_pred ceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccch-hhhccCChhHHHHHHHhcCC
Q 001261 569 VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD-RMFDMGFEPQITRIVQNIRP 647 (1112)
Q Consensus 569 i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah-~~~~~gf~~~i~~il~~~~~ 647 (1112)
-.|...++..+. ....+.+++||.|.|+..|... ..+..++.||+||+| |-.+.+|.-.+.+.+-..++
T Consensus 249 ~~VGYqvrl~~~------~s~~t~L~fcTtGvLLr~L~~~----~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p 318 (924)
T KOG0920|consen 249 EEVGYQVRLESK------RSRETRLLFCTTGVLLRRLQSD----PTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNP 318 (924)
T ss_pred CeeeEEEeeecc------cCCceeEEEecHHHHHHHhccC----cccccCceeeeeeEEEccCCcccHHHHHHHHhhhCC
Confidence 334333333321 2234789999999999998663 578899999999999 77888898888888888899
Q ss_pred CCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCC----------------ccEE------------EEeccc--
Q 001261 648 DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKD----------------ITQL------------VEVRPE-- 697 (1112)
Q Consensus 648 ~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~----------------i~q~------------~~~~~~-- 697 (1112)
+.++|+||||+. .+.|...|. ....+.+.+..++... ..+. +.+...
T Consensus 319 ~LkvILMSAT~d--ae~fs~YF~-~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 395 (924)
T KOG0920|consen 319 DLKVILMSATLD--AELFSDYFG-GCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEI 395 (924)
T ss_pred CceEEEeeeecc--hHHHHHHhC-CCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccc
Confidence 999999999995 444544444 4444666655443221 0000 000001
Q ss_pred -chhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhc-------CCCeeeecCCCCHHHHHHHHHHhhcCCccEEE
Q 001261 698 -SDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH-------GYPCLSLHGAKDQTDRESTISDFKSNVCNLLI 769 (1112)
Q Consensus 698 -~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~-------g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLV 769 (1112)
.+-+..|+..|......|.||||.++...+..+...|... .+-+.++|+.|+..++..++.....|..+||+
T Consensus 396 d~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIl 475 (924)
T KOG0920|consen 396 DYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIIL 475 (924)
T ss_pred cHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhh
Confidence 1122334444444334689999999999999999999752 25688999999999999999999999999999
Q ss_pred ecCcccccCCCCCccEEEE--------eCCCC----------CHhHHHHHhcccCCCCCccEEEEEecCC
Q 001261 770 ATSVAARGLDVKELELVIN--------FDAPN----------HYEDYVHRVGRTGRAGRKGCAITFISEE 821 (1112)
Q Consensus 770 aT~v~~~GlDi~~v~~VI~--------~d~p~----------s~~~y~QriGR~gR~G~~g~~i~~~~~~ 821 (1112)
||++|+.+|.|++|-+||+ ||+-. +.+.-.||.||+||. ..|.||.+|+..
T Consensus 476 aTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~ 544 (924)
T KOG0920|consen 476 ATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRS 544 (924)
T ss_pred hhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechh
Confidence 9999999999999999997 55533 345667999999997 489999999864
|
|
| >KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.4e-22 Score=229.99 Aligned_cols=315 Identities=22% Similarity=0.324 Sum_probs=219.1
Q ss_pred CCChHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001261 488 EKPMPIQAQALPVIM----SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il----~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
..++++|.+.++++. .|-++|+..++|.|||++.+ .+|.+|.... .-.||. |||||...| ..|.++|.+|
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtI-s~l~yl~~~~---~~~GPf-LVi~P~StL-~NW~~Ef~rf 239 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTI-SLLGYLKGRK---GIPGPF-LVIAPKSTL-DNWMNEFKRF 239 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHH-HHHHHHHHhc---CCCCCe-EEEeeHhhH-HHHHHHHHHh
Confidence 367899999999987 57789999999999998744 3444444321 123664 899998888 5588999999
Q ss_pred hhhcCceEEEEeCCCChHHHH-HHH--hcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHH
Q 001261 564 AKVMGVRCVPVYGGSGVAQQI-SEL--KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITR 640 (1112)
Q Consensus 564 ~~~~~i~~~~~~gg~~~~~~~-~~l--~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~ 640 (1112)
+. ++++++.+|.......+ ..+ ....+|+|+|++..+.--. ++.--.+.|||||||||+-+. ...+..
T Consensus 240 ~P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~-----~lk~~~W~ylvIDEaHRiKN~--~s~L~~ 310 (971)
T KOG0385|consen 240 TP--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKS-----FLKKFNWRYLVIDEAHRIKNE--KSKLSK 310 (971)
T ss_pred CC--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHH-----HHhcCCceEEEechhhhhcch--hhHHHH
Confidence 87 56777777765333222 222 2257999999998765421 122235789999999999764 334446
Q ss_pred HHHhcCCCCcEEEEecccc-HHH---HH----------------------------------------------------
Q 001261 641 IVQNIRPDRQTVLFSATFP-RQV---EI---------------------------------------------------- 664 (1112)
Q Consensus 641 il~~~~~~~q~il~SAT~~-~~~---~~---------------------------------------------------- 664 (1112)
++..+.... -+|+|+|+- +++ ..
T Consensus 311 ~lr~f~~~n-rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe 389 (971)
T KOG0385|consen 311 ILREFKTDN-RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVE 389 (971)
T ss_pred HHHHhcccc-eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHh
Confidence 666664443 455666631 111 11
Q ss_pred --------------------------------------------------HHHHhcCCCeEEEEcCcccccCCccEEEEe
Q 001261 665 --------------------------------------------------LARKVLNKPVEIQVGGRSVVNKDITQLVEV 694 (1112)
Q Consensus 665 --------------------------------------------------l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~ 694 (1112)
..++.++.|..+.- ..+. +....--++
T Consensus 390 ~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g-~ePg--~pyttdehL 466 (971)
T KOG0385|consen 390 KSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDG-AEPG--PPYTTDEHL 466 (971)
T ss_pred hcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCC-CCCC--CCCCcchHH
Confidence 11222222221110 0000 111111122
Q ss_pred cccchhHHHHHHHHHhhhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcC---CccEEEe
Q 001261 695 RPESDRFLRLLELLGEWYEK-GKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN---VCNLLIA 770 (1112)
Q Consensus 695 ~~~~~k~~~ll~~l~~~~~~-~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g---~~~VLVa 770 (1112)
...+.|+..|-.+|...... .+||||.......+.|..++.-.+|.++.|.|.++.++|...|+.|... .+-+|++
T Consensus 467 v~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLS 546 (971)
T KOG0385|consen 467 VTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLS 546 (971)
T ss_pred HhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEe
Confidence 33445666666666665544 4999999999999999999999999999999999999999999999854 3567899
Q ss_pred cCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEE--EecCC
Q 001261 771 TSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAIT--FISEE 821 (1112)
Q Consensus 771 T~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~--~~~~~ 821 (1112)
|-+.+.|||+..+++||.||..|+|..-+|..-||+|.|+...+++ |++.+
T Consensus 547 TRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLiten 599 (971)
T KOG0385|consen 547 TRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITEN 599 (971)
T ss_pred ccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccc
Confidence 9999999999999999999999999999999999999998776544 56544
|
|
| >KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-22 Score=222.20 Aligned_cols=329 Identities=20% Similarity=0.272 Sum_probs=234.7
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEE
Q 001261 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGL 544 (1112)
Q Consensus 465 pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~L 544 (1112)
.+.-|...+.++...+.|++..-......+...+..+..++-++++|+||||||++.-...+....... ..+.
T Consensus 23 ~~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~-------~~v~ 95 (699)
T KOG0925|consen 23 AINPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL-------TGVA 95 (699)
T ss_pred hcCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc-------ccee
Confidence 366788888888888888775544445555666677778889999999999999865555554443321 2233
Q ss_pred EEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEec
Q 001261 545 IMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (1112)
Q Consensus 545 Il~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViD 624 (1112)
..-|.|..|+++ ..+++..|++...--+|.+..++++.. ..+-+-+||.|+|+...... ..|.++++||+|
T Consensus 96 CTQprrvaamsv---a~RVadEMDv~lG~EVGysIrfEdC~~--~~T~Lky~tDgmLlrEams~----p~l~~y~viiLD 166 (699)
T KOG0925|consen 96 CTQPRRVAAMSV---AQRVADEMDVTLGEEVGYSIRFEDCTS--PNTLLKYCTDGMLLREAMSD----PLLGRYGVIILD 166 (699)
T ss_pred ecCchHHHHHHH---HHHHHHHhccccchhccccccccccCC--hhHHHHHhcchHHHHHHhhC----cccccccEEEec
Confidence 444888888865 556677888888888888888777643 22455699999998876554 468899999999
Q ss_pred cch-hhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHH
Q 001261 625 EAD-RMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLR 703 (1112)
Q Consensus 625 Eah-~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ 703 (1112)
||| |.+..+....+.+-+..-+++..+|+||||+ ....|-..|.+-|+ +.+.+. ..+..++.-..+.+.+..
T Consensus 167 eahERtlATDiLmGllk~v~~~rpdLk~vvmSatl--~a~Kfq~yf~n~Pl-l~vpg~----~PvEi~Yt~e~erDylEa 239 (699)
T KOG0925|consen 167 EAHERTLATDILMGLLKEVVRNRPDLKLVVMSATL--DAEKFQRYFGNAPL-LAVPGT----HPVEIFYTPEPERDYLEA 239 (699)
T ss_pred hhhhhhHHHHHHHHHHHHHHhhCCCceEEEeeccc--chHHHHHHhCCCCe-eecCCC----CceEEEecCCCChhHHHH
Confidence 999 6666555555555555556899999999998 44555555555555 555542 122223333344566665
Q ss_pred HHHHHHhhh---cCCeEEEEeCCHHHHHHHHHHHHhc---------CCCeeeecCCCCHHHHHHHHHHhh---cC--Ccc
Q 001261 704 LLELLGEWY---EKGKILIFVHSQEKCDALFRDLLKH---------GYPCLSLHGAKDQTDRESTISDFK---SN--VCN 766 (1112)
Q Consensus 704 ll~~l~~~~---~~~~vLIF~~s~~~~~~l~~~L~~~---------g~~~~~ihg~~~~~~R~~~~~~F~---~g--~~~ 766 (1112)
.+..+.+.. ..|.+|||..+.++++..|..+... .+.|+++| +.++..+++-.. +| ..+
T Consensus 240 airtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~Rk 315 (699)
T KOG0925|consen 240 AIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRK 315 (699)
T ss_pred HHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccce
Confidence 555544433 4789999999999999999988743 36788888 334444544333 23 357
Q ss_pred EEEecCcccccCCCCCccEEEEeCC------------------CCCHhHHHHHhcccCCCCCccEEEEEecCC
Q 001261 767 LLIATSVAARGLDVKELELVINFDA------------------PNHYEDYVHRVGRTGRAGRKGCAITFISEE 821 (1112)
Q Consensus 767 VLVaT~v~~~GlDi~~v~~VI~~d~------------------p~s~~~y~QriGR~gR~G~~g~~i~~~~~~ 821 (1112)
|+|+|++++..|.|++|.+||+.++ |.|-.+..||.||+||+. +|.|+.||++.
T Consensus 316 vVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~-pGkcfrLYte~ 387 (699)
T KOG0925|consen 316 VVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKCFRLYTEE 387 (699)
T ss_pred EEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCC-CCceEEeecHH
Confidence 9999999999999999999998544 678888999999999984 99999999864
|
|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.9e-21 Score=230.78 Aligned_cols=130 Identities=21% Similarity=0.332 Sum_probs=117.2
Q ss_pred cccchhHHHHHHHHHhhhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc
Q 001261 695 RPESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV 773 (1112)
Q Consensus 695 ~~~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v 773 (1112)
.+...++..|+..|..+.. +.++||||+++..++.|+..|...|+.+..+||++++.+|..++..|+.|.+.|||||++
T Consensus 422 ~~~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~ 501 (655)
T TIGR00631 422 RPTDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINL 501 (655)
T ss_pred eeccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcCh
Confidence 3445677788888877654 458999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCccEEEEeC-----CCCCHhHHHHHhcccCCCCCccEEEEEecCCccCc
Q 001261 774 AARGLDVKELELVINFD-----APNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKY 825 (1112)
Q Consensus 774 ~~~GlDi~~v~~VI~~d-----~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~ 825 (1112)
+++|+|+|++++||+++ +|.+...|+||+|||||. ..|.|++|++..+..+
T Consensus 502 L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~ 557 (655)
T TIGR00631 502 LREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSM 557 (655)
T ss_pred hcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHH
Confidence 99999999999999988 799999999999999998 5899999998765443
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-21 Score=242.40 Aligned_cols=337 Identities=21% Similarity=0.264 Sum_probs=221.6
Q ss_pred CChHHHHHHHHHHHcC---C-CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 489 KPMPIQAQALPVIMSG---R-DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g---~-dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
.+++.|..++..++.. . .+++.||||+|||++.+++++..+... ....++++++.|++.++.+++..+..++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~----~~~~~r~i~vlP~~t~ie~~~~r~~~~~ 270 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK----IKLKSRVIYVLPFRTIIEDMYRRAKEIF 270 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc----ccccceEEEEccHHHHHHHHHHHHHhhh
Confidence 3488999999988843 4 788899999999999999999876652 1247789999999999999999999877
Q ss_pred hhcCceEEEEeCCCChHHHHHH-----H---------hcCCeEEEeCchHHHHHHHhcCCcc-cccCCceEEEeccchhh
Q 001261 565 KVMGVRCVPVYGGSGVAQQISE-----L---------KRGTEIVVCTPGRMIDILCTSGGKI-TNLRRVTYLVMDEADRM 629 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~-----l---------~~~~~IvV~Tp~~L~~~l~~~~~~~-~~l~~i~~vViDEah~~ 629 (1112)
...++.....+|.....-.... + .....++++||-.+........... ..+-..+++||||+|.+
T Consensus 271 ~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~ 350 (733)
T COG1203 271 GLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLY 350 (733)
T ss_pred cccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhh
Confidence 6654433322333222111100 0 0012445555554433222111111 01123468999999988
Q ss_pred hccCChhHHHHHHHhc-CCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCccc---ccCCccEEEEecccchhHHHHH
Q 001261 630 FDMGFEPQITRIVQNI-RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSV---VNKDITQLVEVRPESDRFLRLL 705 (1112)
Q Consensus 630 ~~~gf~~~i~~il~~~-~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~---~~~~i~q~~~~~~~~~k~~~ll 705 (1112)
.+......+..++..+ ..+..+|+||||+|+.........+.....+....... ....+.+.....-.......+.
T Consensus 351 ~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 430 (733)
T COG1203 351 ADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELI 430 (733)
T ss_pred cccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhh
Confidence 7653333344444333 34678999999999999888888777665444321100 0001111100000000001122
Q ss_pred H-HHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHh----hcCCccEEEecCcccccCCC
Q 001261 706 E-LLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDF----KSNVCNLLIATSVAARGLDV 780 (1112)
Q Consensus 706 ~-~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F----~~g~~~VLVaT~v~~~GlDi 780 (1112)
. ........++++|.|||+..|..++..|+..+..++.|||.+...+|...+..+ +.+...|+|||+|++.||||
T Consensus 431 ~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDi 510 (733)
T COG1203 431 ELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDI 510 (733)
T ss_pred hcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecc
Confidence 2 222333457999999999999999999999877899999999999999888754 45678999999999999999
Q ss_pred CCccEEEEeCCCCCHhHHHHHhcccCCCC--CccEEEEEecCCccCchHHHHHH
Q 001261 781 KELELVINFDAPNHYEDYVHRVGRTGRAG--RKGCAITFISEEDAKYSPDLVKA 832 (1112)
Q Consensus 781 ~~v~~VI~~d~p~s~~~y~QriGR~gR~G--~~g~~i~~~~~~d~~~~~~i~~~ 832 (1112)
. ++++|--=.| +...+||+||++|-| ..|.++++...............
T Consensus 511 d-fd~mITe~aP--idSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~~ 561 (733)
T COG1203 511 D-FDVLITELAP--IDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYEK 561 (733)
T ss_pred c-cCeeeecCCC--HHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhhc
Confidence 6 7777753334 778999999999999 56888877766655555444443
|
|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.8e-21 Score=231.94 Aligned_cols=127 Identities=24% Similarity=0.300 Sum_probs=113.1
Q ss_pred ccchhHHHHHHHHHhhh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcc
Q 001261 696 PESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVA 774 (1112)
Q Consensus 696 ~~~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~ 774 (1112)
....|+..++..+.... .+.++||||+|+..++.|+..|...|+++..||+ .+.+|+..+..|..+...|+|||++|
T Consensus 579 t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMA 656 (1025)
T PRK12900 579 TRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMA 656 (1025)
T ss_pred CHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCc
Confidence 34468888888886644 3569999999999999999999999999999997 68899999999999999999999999
Q ss_pred cccCCCC---Ccc-----EEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccC
Q 001261 775 ARGLDVK---ELE-----LVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAK 824 (1112)
Q Consensus 775 ~~GlDi~---~v~-----~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~ 824 (1112)
+||+||+ +|. +||++..|.+...|+|++|||||.|.+|.+++|++..|.-
T Consensus 657 GRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~L 714 (1025)
T PRK12900 657 GRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDEL 714 (1025)
T ss_pred CCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHH
Confidence 9999999 554 4488999999999999999999999999999999987654
|
|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.3e-20 Score=203.80 Aligned_cols=189 Identities=21% Similarity=0.281 Sum_probs=142.9
Q ss_pred CcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhh-cCCeEEEEeCCHHHH
Q 001261 649 RQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWY-EKGKILIFVHSQEKC 727 (1112)
Q Consensus 649 ~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~ 727 (1112)
.|+|++|||+.+.-... .-++-+.-.+...+.+ ...+.+.+....+..|+..|.... .+.++||-+-|++.+
T Consensus 387 ~q~i~VSATPg~~E~e~---s~~~vveQiIRPTGLl----DP~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkmA 459 (663)
T COG0556 387 PQTIYVSATPGDYELEQ---SGGNVVEQIIRPTGLL----DPEIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKMA 459 (663)
T ss_pred CCEEEEECCCChHHHHh---ccCceeEEeecCCCCC----CCceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHHH
Confidence 69999999986542211 1122333333333332 233556677778888888877644 356999999999999
Q ss_pred HHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCC-----CCHhHHHHHh
Q 001261 728 DALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAP-----NHYEDYVHRV 802 (1112)
Q Consensus 728 ~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p-----~s~~~y~Qri 802 (1112)
+.|..+|.+.|+.+..+|++...-+|..++..++.|.++|||.-+.+-.|||+|.|.+|.++|.. .|-.+.+|-|
T Consensus 460 EdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtI 539 (663)
T COG0556 460 EDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTI 539 (663)
T ss_pred HHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998764 4788999999
Q ss_pred cccCCCCCccEEEEEecCCccC---------chHHHHHHHhhccCCCChhHH
Q 001261 803 GRTGRAGRKGCAITFISEEDAK---------YSPDLVKALELSEQVVPDDLK 845 (1112)
Q Consensus 803 GR~gR~G~~g~~i~~~~~~d~~---------~~~~i~~~l~~~~~~vp~~l~ 845 (1112)
|||+|.- .|.+|++.+.-... .-..+...++.....+|..+.
T Consensus 540 GRAARN~-~GkvIlYAD~iT~sM~~Ai~ET~RRR~iQ~~yN~~hgItP~ti~ 590 (663)
T COG0556 540 GRAARNV-NGKVILYADKITDSMQKAIDETERRREIQMAYNEEHGITPQTIK 590 (663)
T ss_pred HHHhhcc-CCeEEEEchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhh
Confidence 9999964 78899877542221 112333345555566776543
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-19 Score=216.30 Aligned_cols=280 Identities=23% Similarity=0.372 Sum_probs=200.9
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
.|| .|...|.--..-++.|+.+-++||||.|||+- .+.|-..+. ..|.+++||+||..|+.|+++.+.+|+
T Consensus 79 ~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTf-g~~~sl~~a-------~kgkr~yii~PT~~Lv~Q~~~kl~~~~ 149 (1187)
T COG1110 79 TGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTF-GLLMSLYLA-------KKGKRVYIIVPTTTLVRQVYERLKKFA 149 (1187)
T ss_pred hCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHH-HHHHHHHHH-------hcCCeEEEEecCHHHHHHHHHHHHHHH
Confidence 454 89999999999999999999999999999963 333332322 236889999999999999999999999
Q ss_pred hhcC-ceEEEEeCCC-C---hHHHHHHHhc-CCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhc-------
Q 001261 565 KVMG-VRCVPVYGGS-G---VAQQISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD------- 631 (1112)
Q Consensus 565 ~~~~-i~~~~~~gg~-~---~~~~~~~l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~------- 631 (1112)
...+ +.+..+|.+. + ..+.+..+.+ +.+|+|+|..-|...+..- .. .++++|++|.+|.++-
T Consensus 150 e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L----~~-~kFdfifVDDVDA~LkaskNvDr 224 (1187)
T COG1110 150 EDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEEL----SK-LKFDFIFVDDVDAILKASKNVDR 224 (1187)
T ss_pred hhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHh----cc-cCCCEEEEccHHHHHhccccHHH
Confidence 8776 5555545554 2 2233455554 5799999988765554321 12 3588999999998753
Q ss_pred ----cCChhHH-------HHHHHhc------------------------CCCCcEEEEeccccHHH--HHHHHHhcCCCe
Q 001261 632 ----MGFEPQI-------TRIVQNI------------------------RPDRQTVLFSATFPRQV--EILARKVLNKPV 674 (1112)
Q Consensus 632 ----~gf~~~i-------~~il~~~------------------------~~~~q~il~SAT~~~~~--~~l~~~~~~~p~ 674 (1112)
.||...+ ..+...+ ....++|+.|||..+.- ..+.+.+++
T Consensus 225 iL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlg--- 301 (1187)
T COG1110 225 LLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLG--- 301 (1187)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhC---
Confidence 2343321 1111111 23357899999975432 334555555
Q ss_pred EEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCC---HHHHHHHHHHHHhcCCCeeeecCCCCHH
Q 001261 675 EIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHS---QEKCDALFRDLLKHGYPCLSLHGAKDQT 751 (1112)
Q Consensus 675 ~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s---~~~~~~l~~~L~~~g~~~~~ihg~~~~~ 751 (1112)
+.++.......+|...+... .-...+++++..+ +...|||++. .+.++.|+.+|..+|+++..+|+..
T Consensus 302 -FevG~~~~~LRNIvD~y~~~---~~~e~~~elvk~l--G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~~--- 372 (1187)
T COG1110 302 -FEVGSGGEGLRNIVDIYVES---ESLEKVVELVKKL--GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAEK--- 372 (1187)
T ss_pred -CccCccchhhhheeeeeccC---ccHHHHHHHHHHh--CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeeccc---
Confidence 34555555555666655544 3344455555554 2367999999 9999999999999999999999843
Q ss_pred HHHHHHHHhhcCCccEEEec----CcccccCCCCC-ccEEEEeCCC
Q 001261 752 DRESTISDFKSNVCNLLIAT----SVAARGLDVKE-LELVINFDAP 792 (1112)
Q Consensus 752 ~R~~~~~~F~~g~~~VLVaT----~v~~~GlDi~~-v~~VI~~d~p 792 (1112)
...++.|..|+++|||++ .++-||||+|. +.++|+|++|
T Consensus 373 --~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 373 --EEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred --hhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 678999999999999976 78899999998 8999999997
|
|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-19 Score=227.81 Aligned_cols=345 Identities=19% Similarity=0.211 Sum_probs=215.8
Q ss_pred CHHHHHHHHHCCCCCChHHHHHHHH----HHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccch
Q 001261 475 TSKIMETIRKLNYEKPMPIQAQALP----VIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTR 550 (1112)
Q Consensus 475 ~~~l~~~l~~~~~~~pt~iQ~~ai~----~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptr 550 (1112)
.+.+...+...||. ++|.|.+.+. .+..++++++.|+||+|||++|++|++.++. .+.++||.+||+
T Consensus 232 ~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~--------~~~~vvi~t~t~ 302 (850)
T TIGR01407 232 SSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI--------TEKPVVISTNTK 302 (850)
T ss_pred cHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc--------CCCeEEEEeCcH
Confidence 34566677778886 8899998776 4557889999999999999999999987654 245799999999
Q ss_pred hHHHHHHH-HHHHHhhhcC--ceEEEEeCCCChH-----H----------H-------------------HHH-------
Q 001261 551 ELVQQIHS-DIRKFAKVMG--VRCVPVYGGSGVA-----Q----------Q-------------------ISE------- 586 (1112)
Q Consensus 551 eLa~Q~~~-~~~~~~~~~~--i~~~~~~gg~~~~-----~----------~-------------------~~~------- 586 (1112)
+|..|+.. .+..+.+.++ ++++++.|+...- . . +..
T Consensus 303 ~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~ 382 (850)
T TIGR01407 303 VLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGN 382 (850)
T ss_pred HHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcc
Confidence 99999865 6766666555 7777777764320 0 0 000
Q ss_pred ------------------------------HhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccC---
Q 001261 587 ------------------------------LKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG--- 633 (1112)
Q Consensus 587 ------------------------------l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~g--- 633 (1112)
....++|||+++..|+..+.... ..|....+|||||||+|.+..
T Consensus 383 ~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~---~ilp~~~~lIiDEAH~L~d~a~~~ 459 (850)
T TIGR01407 383 KMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNP---ELFPSFRDLIIDEAHHLPDIAENQ 459 (850)
T ss_pred hhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhccc---ccCCCCCEEEEECcchHHHHHHHH
Confidence 01125899999998877664322 234556899999999975310
Q ss_pred ----C-----hhH----------------------------------------------------------------HHH
Q 001261 634 ----F-----EPQ----------------------------------------------------------------ITR 640 (1112)
Q Consensus 634 ----f-----~~~----------------------------------------------------------------i~~ 640 (1112)
+ ... +..
T Consensus 460 ~~~~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~ 539 (850)
T TIGR01407 460 LQEELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRK 539 (850)
T ss_pred hcceeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 0 000 000
Q ss_pred HHHh---------------------c---------------------------CCCCcEEEEeccccH--HHHHHHHHhc
Q 001261 641 IVQN---------------------I---------------------------RPDRQTVLFSATFPR--QVEILARKVL 670 (1112)
Q Consensus 641 il~~---------------------~---------------------------~~~~q~il~SAT~~~--~~~~l~~~~~ 670 (1112)
.+.. . +....+|++|||++. ....+...+.
T Consensus 540 ~~~~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lG 619 (850)
T TIGR01407 540 FDLALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLG 619 (850)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcC
Confidence 0000 0 011357899999863 2333333332
Q ss_pred C-CCeEEEEcCcccccCCccEEEEe---c-----ccchhHHHHHHHHHhhh--cCCeEEEEeCCHHHHHHHHHHHHh---
Q 001261 671 N-KPVEIQVGGRSVVNKDITQLVEV---R-----PESDRFLRLLELLGEWY--EKGKILIFVHSQEKCDALFRDLLK--- 736 (1112)
Q Consensus 671 ~-~p~~i~i~~~~~~~~~i~q~~~~---~-----~~~~k~~~ll~~l~~~~--~~~~vLIF~~s~~~~~~l~~~L~~--- 736 (1112)
- +.....+...++....-...+.. . ........+...|.... ..|++||||+|...++.++..|..
T Consensus 620 l~~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~ 699 (850)
T TIGR01407 620 LTDVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPE 699 (850)
T ss_pred CCccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhcc
Confidence 2 22212221111111111111111 0 01122223444443322 357999999999999999999975
Q ss_pred -cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCcc--EEEEeCCCCC----H--------------
Q 001261 737 -HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELE--LVINFDAPNH----Y-------------- 795 (1112)
Q Consensus 737 -~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~--~VI~~d~p~s----~-------------- 795 (1112)
.++.+ +..+.. ..|..+++.|++|...||+||+.+++|||+++.. +||+..+|.. +
T Consensus 700 ~~~~~~--l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~ 776 (850)
T TIGR01407 700 FEGYEV--LAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGK 776 (850)
T ss_pred ccCceE--EecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcC
Confidence 23443 333333 5788999999999999999999999999999955 6677776642 1
Q ss_pred ------------hHHHHHhcccCCCCCccEEEEEecCC--ccCchHHHHHHHh
Q 001261 796 ------------EDYVHRVGRTGRAGRKGCAITFISEE--DAKYSPDLVKALE 834 (1112)
Q Consensus 796 ------------~~y~QriGR~gR~G~~g~~i~~~~~~--d~~~~~~i~~~l~ 834 (1112)
..+.|.+||+-|.....-++++++.. ...+-..+.+.|.
T Consensus 777 ~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sLp 829 (850)
T TIGR01407 777 NPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSLP 829 (850)
T ss_pred CchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhCC
Confidence 12359999999987655456666654 4445566666664
|
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. |
| >KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.4e-21 Score=229.60 Aligned_cols=328 Identities=19% Similarity=0.293 Sum_probs=214.7
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHH----cCCCEEEEcCCCChHHHH---HHHHHHHHHhcCCCCCCCC
Q 001261 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIM----SGRDCIGVAKTGSGKTLA---FVLPMLRHIKDQPPVAAGD 539 (1112)
Q Consensus 467 ~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il----~g~dvii~a~TGsGKT~~---~llp~l~~l~~~~~~~~~~ 539 (1112)
..|..+...+..+.. ..++.+|...+++++ .+.++|+..++|.|||++ ||-.++.... -.
T Consensus 354 p~~~Kle~qp~~~~g------~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~-------~~ 420 (1373)
T KOG0384|consen 354 PRFRKLEKQPEYKGG------NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQ-------IH 420 (1373)
T ss_pred hhHHHhhcCcccccc------chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhh-------cc
Confidence 345555444444332 678999999999987 678999999999999975 3333333221 13
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHh----c-----CCeEEEeCchHHHHHHHhcCC
Q 001261 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELK----R-----GTEIVVCTPGRMIDILCTSGG 610 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~----~-----~~~IvV~Tp~~L~~~l~~~~~ 610 (1112)
||. |||||...+ ..|..+|..++ .+++++.+|.....+.+.... . ..+++++|+..++.--..
T Consensus 421 gpf-lvvvplst~-~~W~~ef~~w~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~--- 492 (1373)
T KOG0384|consen 421 GPF-LVVVPLSTI-TAWEREFETWT---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAE--- 492 (1373)
T ss_pred CCe-EEEeehhhh-HHHHHHHHHHh---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhh---
Confidence 564 888997665 45777787776 567777777665555554321 1 268999999987542211
Q ss_pred cccccCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEecccc-HHHHHHHHHh-cCCCe--------------
Q 001261 611 KITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFP-RQVEILARKV-LNKPV-------------- 674 (1112)
Q Consensus 611 ~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~-~~~~~l~~~~-~~~p~-------------- 674 (1112)
+.--.+.+++|||||+|-+. ...+...+..+.... -||+|+|+- +.+..|...+ +-.|-
T Consensus 493 --L~~i~w~~~~vDeahrLkN~--~~~l~~~l~~f~~~~-rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~ 567 (1373)
T KOG0384|consen 493 --LSKIPWRYLLVDEAHRLKND--ESKLYESLNQFKMNH-RLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDE 567 (1373)
T ss_pred --hccCCcceeeecHHhhcCch--HHHHHHHHHHhcccc-eeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcc
Confidence 11124679999999998753 334444455554333 466677742 2222211000 00000
Q ss_pred ----------------------------------E-EEE-----------------------cCcccccCCc--------
Q 001261 675 ----------------------------------E-IQV-----------------------GGRSVVNKDI-------- 688 (1112)
Q Consensus 675 ----------------------------------~-i~i-----------------------~~~~~~~~~i-------- 688 (1112)
. +.| |..+.. .++
T Consensus 568 ~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~-~~lLNimmELk 646 (1373)
T KOG0384|consen 568 ETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGST-PSLLNIMMELK 646 (1373)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCC-chHHHHHHHHH
Confidence 0 000 000000 000
Q ss_pred ---cEEEEecc-----------------------cchhHHHHHHHHHhhhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCe
Q 001261 689 ---TQLVEVRP-----------------------ESDRFLRLLELLGEWYEK-GKILIFVHSQEKCDALFRDLLKHGYPC 741 (1112)
Q Consensus 689 ---~q~~~~~~-----------------------~~~k~~~ll~~l~~~~~~-~~vLIF~~s~~~~~~l~~~L~~~g~~~ 741 (1112)
.+.+.+.. .+.|+..|-.+|..+... .+||||...+...+.|+.||...+|++
T Consensus 647 KccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypf 726 (1373)
T KOG0384|consen 647 KCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPF 726 (1373)
T ss_pred HhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcc
Confidence 00000111 011111122233333333 599999999999999999999999999
Q ss_pred eeecCCCCHHHHHHHHHHhh---cCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccE--EEE
Q 001261 742 LSLHGAKDQTDRESTISDFK---SNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGC--AIT 816 (1112)
Q Consensus 742 ~~ihg~~~~~~R~~~~~~F~---~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~--~i~ 816 (1112)
-.|.|.+..+.|..+|..|. +..+.+|+||-+.+-|||+-.+++||+||..|+|..-+|...||+|.|++.. +|.
T Consensus 727 QRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYR 806 (1373)
T KOG0384|consen 727 QRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYR 806 (1373)
T ss_pred eeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEE
Confidence 99999999999999999998 3467899999999999999999999999999999999999999999998765 677
Q ss_pred EecCC
Q 001261 817 FISEE 821 (1112)
Q Consensus 817 ~~~~~ 821 (1112)
|+|..
T Consensus 807 LVTk~ 811 (1373)
T KOG0384|consen 807 LVTKN 811 (1373)
T ss_pred EecCC
Confidence 88865
|
|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.1e-19 Score=219.62 Aligned_cols=147 Identities=19% Similarity=0.323 Sum_probs=129.5
Q ss_pred cchhHHHHHHHHHhhhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCccc
Q 001261 697 ESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA 775 (1112)
Q Consensus 697 ~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~ 775 (1112)
...++..|+..|..+.. +.++||||++...++.|+..|...|+++..+||++++.+|..++..|+.|.+.|||||++++
T Consensus 428 ~~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~ 507 (652)
T PRK05298 428 TKGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLR 507 (652)
T ss_pred ccccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHh
Confidence 44567778888877654 45899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCccEEEEeCC-----CCCHhHHHHHhcccCCCCCccEEEEEecC---------CccCchHHHHHHHhhccCCCC
Q 001261 776 RGLDVKELELVINFDA-----PNHYEDYVHRVGRTGRAGRKGCAITFISE---------EDAKYSPDLVKALELSEQVVP 841 (1112)
Q Consensus 776 ~GlDi~~v~~VI~~d~-----p~s~~~y~QriGR~gR~G~~g~~i~~~~~---------~d~~~~~~i~~~l~~~~~~vp 841 (1112)
+|+|+|++++||+++. |.+...|+||+||+||. ..|.|++|++. .+......|...++.....+|
T Consensus 508 rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 586 (652)
T PRK05298 508 EGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITP 586 (652)
T ss_pred CCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCC
Confidence 9999999999999875 78999999999999996 68999999984 355566677777788788888
Q ss_pred hhH
Q 001261 842 DDL 844 (1112)
Q Consensus 842 ~~l 844 (1112)
...
T Consensus 587 ~~~ 589 (652)
T PRK05298 587 KTI 589 (652)
T ss_pred hhH
Confidence 754
|
|
| >KOG2340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-20 Score=208.45 Aligned_cols=345 Identities=20% Similarity=0.233 Sum_probs=249.5
Q ss_pred CCCCChHHHHHHHHHHHcCCCEEEEc-CCCChH--HHHHHHHHHHHHhcCCCCCCC-----------------------C
Q 001261 486 NYEKPMPIQAQALPVIMSGRDCIGVA-KTGSGK--TLAFVLPMLRHIKDQPPVAAG-----------------------D 539 (1112)
Q Consensus 486 ~~~~pt~iQ~~ai~~il~g~dvii~a-~TGsGK--T~~~llp~l~~l~~~~~~~~~-----------------------~ 539 (1112)
.-..+|+.|.+.+-.+.+++|++..- ..+.|+ +-.|+|.+|+||.+.+.+..+ .
T Consensus 213 ~s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~t 292 (698)
T KOG2340|consen 213 KSEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFT 292 (698)
T ss_pred ccCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCC
Confidence 34578999999999999999998763 335565 558999999998754322111 1
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCc---------eEEEEeCC--------CChHHHHHHHhc-------------
Q 001261 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGV---------RCVPVYGG--------SGVAQQISELKR------------- 589 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i---------~~~~~~gg--------~~~~~~~~~l~~------------- 589 (1112)
.|+||||||+|+-|..+.+.+..++....- +...-|+| ...+++...+..
T Consensus 293 RpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~f 372 (698)
T KOG2340|consen 293 RPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAF 372 (698)
T ss_pred CceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHH
Confidence 389999999999999998888777432211 11112332 112222222222
Q ss_pred ------------CCeEEEeCchHHHHHHHhcCCcc---cccCCceEEEeccchhhhccCChhHHHHHHHhcCCC------
Q 001261 590 ------------GTEIVVCTPGRMIDILCTSGGKI---TNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD------ 648 (1112)
Q Consensus 590 ------------~~~IvV~Tp~~L~~~l~~~~~~~---~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~------ 648 (1112)
..+||||+|-.|..++...+.+. -.|+.|.++|||.||-|+ ++.|.++..|+.++...
T Consensus 373 tkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l-~QNwEhl~~ifdHLn~~P~k~h~ 451 (698)
T KOG2340|consen 373 TKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIML-MQNWEHLLHIFDHLNLQPSKQHD 451 (698)
T ss_pred HHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHH-HhhHHHHHHHHHHhhcCcccccC
Confidence 36999999999988887443322 236889999999999877 56788899998877432
Q ss_pred ------------------CcEEEEeccccHHHHHHHHHhcCCCeE-EE----Ec--CcccccCCccEEE---Ee----cc
Q 001261 649 ------------------RQTVLFSATFPRQVEILARKVLNKPVE-IQ----VG--GRSVVNKDITQLV---EV----RP 696 (1112)
Q Consensus 649 ------------------~q~il~SAT~~~~~~~l~~~~~~~p~~-i~----i~--~~~~~~~~i~q~~---~~----~~ 696 (1112)
+|+++||+-..+.+..+...+|.+..- +. +. ..+.+...+.|.+ .+ ..
T Consensus 452 ~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~ 531 (698)
T KOG2340|consen 452 VDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIET 531 (698)
T ss_pred CChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccC
Confidence 689999999888888888887765421 11 11 1111222233332 22 23
Q ss_pred cchhHHHHHHHHHhhhc---CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc
Q 001261 697 ESDRFLRLLELLGEWYE---KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV 773 (1112)
Q Consensus 697 ~~~k~~~ll~~l~~~~~---~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v 773 (1112)
.+.+|..++..|...+. ...+|||+|+.-+...+.+++.+.++.+..||...+...-..+...|..|...||+.|.-
T Consensus 532 ~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER 611 (698)
T KOG2340|consen 532 PDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTER 611 (698)
T ss_pred chHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehh
Confidence 45678887776654332 236899999999999999999999999999999999999999999999999999999998
Q ss_pred cc--ccCCCCCccEEEEeCCCCCHhHHHHHh---cccCCCC----CccEEEEEecCCccCchHHHHH
Q 001261 774 AA--RGLDVKELELVINFDAPNHYEDYVHRV---GRTGRAG----RKGCAITFISEEDAKYSPDLVK 831 (1112)
Q Consensus 774 ~~--~GlDi~~v~~VI~~d~p~s~~~y~Qri---GR~gR~G----~~g~~i~~~~~~d~~~~~~i~~ 831 (1112)
+. +..+|.+|..||+|.+|.+|..|...| +|+.--| ..-.|.++|++.|...+..|+-
T Consensus 612 ~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~ivG 678 (698)
T KOG2340|consen 612 AHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIVG 678 (698)
T ss_pred hhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhhh
Confidence 87 789999999999999999998886544 5543222 2357999999999888777764
|
|
| >KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.3e-20 Score=211.39 Aligned_cols=314 Identities=21% Similarity=0.306 Sum_probs=208.5
Q ss_pred CChHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 489 KPMPIQAQALPVIM----SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il----~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
.++++|+.++.++. ++...|+..++|.|||++.+. .|..|...... ...+|||||.. |..||..+|..|+
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiis-FLaaL~~S~k~----~~paLIVCP~T-ii~qW~~E~~~w~ 278 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIIS-FLAALHHSGKL----TKPALIVCPAT-IIHQWMKEFQTWW 278 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHH-HHHHHhhcccc----cCceEEEccHH-HHHHHHHHHHHhC
Confidence 56799999999986 466789999999999985332 22222222111 24589999974 6689999999997
Q ss_pred hhcCceEEEEeCCCCh------------HHH-HHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhc
Q 001261 565 KVMGVRCVPVYGGSGV------------AQQ-ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD 631 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~------------~~~-~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~ 631 (1112)
.. +++..++|-.+. ..+ +.....+..|+|+|+..|.- .+ ....-..+.|+|+||.|++-+
T Consensus 279 p~--~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~----~~-d~l~~~~W~y~ILDEGH~IrN 351 (923)
T KOG0387|consen 279 PP--FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRI----QG-DDLLGILWDYVILDEGHRIRN 351 (923)
T ss_pred cc--eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcc----cC-cccccccccEEEecCcccccC
Confidence 65 455556554431 000 01112245799999886521 11 112223588999999999876
Q ss_pred cCChhHHHHHHHhcCCCCcEEEEeccc-cHHHHHHHHH---h--------------cCCCeEEEEcCccc----------
Q 001261 632 MGFEPQITRIVQNIRPDRQTVLFSATF-PRQVEILARK---V--------------LNKPVEIQVGGRSV---------- 683 (1112)
Q Consensus 632 ~gf~~~i~~il~~~~~~~q~il~SAT~-~~~~~~l~~~---~--------------~~~p~~i~i~~~~~---------- 683 (1112)
.. .++...+..++. .+-|++|+|+ .+.+..|... . +..| |.+|+...
T Consensus 352 pn--s~islackki~T-~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~p--I~~GgyaNAs~~qv~~ay 426 (923)
T KOG0387|consen 352 PN--SKISLACKKIRT-VHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHP--INRGGYANASPRQVQTAY 426 (923)
T ss_pred Cc--cHHHHHHHhccc-cceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhh--eeccccCCCCHHHHHHHH
Confidence 43 344444555533 4456666663 2222111100 0 0000 11110000
Q ss_pred -------------------------------------------------------------------ccCCccEEE----
Q 001261 684 -------------------------------------------------------------------VNKDITQLV---- 692 (1112)
Q Consensus 684 -------------------------------------------------------------------~~~~i~q~~---- 692 (1112)
...++.+.+
T Consensus 427 kca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHP 506 (923)
T KOG0387|consen 427 KCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHP 506 (923)
T ss_pred HHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCc
Confidence 000000000
Q ss_pred -----------------EecccchhHHHHHHHHHhhhcCC-eEEEEeCCHHHHHHHHHHHH-hcCCCeeeecCCCCHHHH
Q 001261 693 -----------------EVRPESDRFLRLLELLGEWYEKG-KILIFVHSQEKCDALFRDLL-KHGYPCLSLHGAKDQTDR 753 (1112)
Q Consensus 693 -----------------~~~~~~~k~~~ll~~l~~~~~~~-~vLIF~~s~~~~~~l~~~L~-~~g~~~~~ihg~~~~~~R 753 (1112)
-......|+..+..+|..|...| ++|+|..++...+.|..+|. ..||.++.+.|..+...|
T Consensus 507 dll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R 586 (923)
T KOG0387|consen 507 DLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALR 586 (923)
T ss_pred ccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchh
Confidence 00112357777888888887654 99999999999999999999 589999999999999999
Q ss_pred HHHHHHhhcCCc--cEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEE--EEEecC
Q 001261 754 ESTISDFKSNVC--NLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCA--ITFISE 820 (1112)
Q Consensus 754 ~~~~~~F~~g~~--~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~--i~~~~~ 820 (1112)
..++..|.++.. -+|++|.|.+-|||+.+++-||+||+.|+|..-.|..-|+.|.|++..+ |.|++.
T Consensus 587 ~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~ 657 (923)
T KOG0387|consen 587 QKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTA 657 (923)
T ss_pred hHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecC
Confidence 999999997763 4688999999999999999999999999999999999999999987544 445654
|
|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-19 Score=214.96 Aligned_cols=309 Identities=19% Similarity=0.277 Sum_probs=215.8
Q ss_pred CCChHHHHHHHHHHHcC----CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001261 488 EKPMPIQAQALPVIMSG----RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g----~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
..+.+-|..++..|... ...|+.|.||||||.+|+-.+-..+.. |.++|||+|-..|..|+...|+..
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~--------GkqvLvLVPEI~Ltpq~~~rf~~r 268 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ--------GKQVLVLVPEIALTPQLLARFKAR 268 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc--------CCEEEEEeccccchHHHHHHHHHH
Confidence 35678999999999866 678999999999999998877766554 789999999999999998888775
Q ss_pred hhhcCceEEEEeCCCChHHHHHHHh----cCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhcc---CCh-
Q 001261 564 AKVMGVRCVPVYGGSGVAQQISELK----RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDM---GFE- 635 (1112)
Q Consensus 564 ~~~~~i~~~~~~gg~~~~~~~~~l~----~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~---gf~- 635 (1112)
+|.++..+++|.+..+....+. ....|||||-..| +..|.++++|||||-|--.-. +..
T Consensus 269 ---Fg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl----------F~Pf~~LGLIIvDEEHD~sYKq~~~prY 335 (730)
T COG1198 269 ---FGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL----------FLPFKNLGLIIVDEEHDSSYKQEDGPRY 335 (730)
T ss_pred ---hCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh----------cCchhhccEEEEeccccccccCCcCCCc
Confidence 4578888899888776554433 4579999996543 257899999999999953211 122
Q ss_pred -hHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCccccc-CCccEEEEecccchhH-----HHHHHHH
Q 001261 636 -PQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVN-KDITQLVEVRPESDRF-----LRLLELL 708 (1112)
Q Consensus 636 -~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~-~~i~q~~~~~~~~~k~-----~~ll~~l 708 (1112)
..-..++..-..+.++||-|||+. ++.+.+-.-+..-.+.+..+.... ..-.+.+.+..+.... ..|++.|
T Consensus 336 hARdvA~~Ra~~~~~pvvLgSATPS--LES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i 413 (730)
T COG1198 336 HARDVAVLRAKKENAPVVLGSATPS--LESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAI 413 (730)
T ss_pred CHHHHHHHHHHHhCCCEEEecCCCC--HHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHH
Confidence 222334444456788999999985 444444433333334443332211 1112223333322222 4566777
Q ss_pred Hhhhc-CCeEEEEeCCHHHH------------------------------------------------------------
Q 001261 709 GEWYE-KGKILIFVHSQEKC------------------------------------------------------------ 727 (1112)
Q Consensus 709 ~~~~~-~~~vLIF~~s~~~~------------------------------------------------------------ 727 (1112)
..... +.++|||+|.+..+
T Consensus 414 ~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gt 493 (730)
T COG1198 414 RKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGT 493 (730)
T ss_pred HHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccH
Confidence 65554 45899999876543
Q ss_pred HHHHHHHHhc--CCCeeeecCCCCHH--HHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCC----------
Q 001261 728 DALFRDLLKH--GYPCLSLHGAKDQT--DRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPN---------- 793 (1112)
Q Consensus 728 ~~l~~~L~~~--g~~~~~ihg~~~~~--~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~---------- 793 (1112)
+.+.+.|... +..++.+.++.... .-...+..|.+|+.+|||.|.+++.|+|+|++++|...|...
T Consensus 494 erieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~ 573 (730)
T COG1198 494 ERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRAS 573 (730)
T ss_pred HHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchH
Confidence 3444555443 56777777776553 356789999999999999999999999999999988765532
Q ss_pred --CHhHHHHHhcccCCCCCccEEEEEec
Q 001261 794 --HYEDYVHRVGRTGRAGRKGCAITFIS 819 (1112)
Q Consensus 794 --s~~~y~QriGR~gR~G~~g~~i~~~~ 819 (1112)
...-+.|-.||+||++.+|.+++-..
T Consensus 574 Er~fqll~QvaGRAgR~~~~G~VvIQT~ 601 (730)
T COG1198 574 ERTFQLLMQVAGRAGRAGKPGEVVIQTY 601 (730)
T ss_pred HHHHHHHHHHHhhhccCCCCCeEEEEeC
Confidence 24566888999999999998886543
|
|
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.9e-19 Score=208.08 Aligned_cols=321 Identities=19% Similarity=0.214 Sum_probs=222.0
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+| ..|+++|.-+.-.++.|. |....||+|||+++++|++...+. |..|.||+||--||.|-+.++..++
T Consensus 75 lg-~r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~--------G~~VhvvT~NdyLA~RDae~m~~ly 143 (764)
T PRK12326 75 LG-LRPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ--------GRRVHVITVNDYLARRDAEWMGPLY 143 (764)
T ss_pred cC-CCcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc--------CCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 45 368999999998888874 778999999999999999877654 6789999999999999999999999
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHH-HHHHhcC---CcccccCCceEEEeccchhhh-cc-------
Q 001261 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMI-DILCTSG---GKITNLRRVTYLVMDEADRMF-DM------- 632 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~-~~l~~~~---~~~~~l~~i~~vViDEah~~~-~~------- 632 (1112)
..+|+++.++.++.+..+..... .|+|+++|..-|. ++|..+- ........+.|+||||+|.|+ |.
T Consensus 144 ~~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiI 221 (764)
T PRK12326 144 EALGLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVL 221 (764)
T ss_pred HhcCCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceee
Confidence 99999999999988766544444 4899999987652 2332210 011224568899999999763 20
Q ss_pred -------CChhHHHHHHHhcCCC---------------------------------------------------------
Q 001261 633 -------GFEPQITRIVQNIRPD--------------------------------------------------------- 648 (1112)
Q Consensus 633 -------gf~~~i~~il~~~~~~--------------------------------------------------------- 648 (1112)
.....+..++..+..+
T Consensus 222 Sg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d 301 (764)
T PRK12326 222 AGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRD 301 (764)
T ss_pred eCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcC
Confidence 0111122222222111
Q ss_pred -------------------------------------------------------------CcEEEEeccccHHHHHHHH
Q 001261 649 -------------------------------------------------------------RQTVLFSATFPRQVEILAR 667 (1112)
Q Consensus 649 -------------------------------------------------------------~q~il~SAT~~~~~~~l~~ 667 (1112)
..+.+||+|.......| .
T Consensus 302 ~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef-~ 380 (764)
T PRK12326 302 VHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQL-R 380 (764)
T ss_pred CcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHH-H
Confidence 11334444443322222 2
Q ss_pred HhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCeeeecC
Q 001261 668 KVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEK-GKILIFVHSQEKCDALFRDLLKHGYPCLSLHG 746 (1112)
Q Consensus 668 ~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~-~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg 746 (1112)
.+++-++.+.+...+....... ...+.....|+..++..+...... .+|||.|.++...+.|+..|.+.|+++..|++
T Consensus 381 ~iY~l~Vv~IPtnkp~~R~d~~-d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNA 459 (764)
T PRK12326 381 QFYDLGVSVIPPNKPNIREDEA-DRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNA 459 (764)
T ss_pred HHhCCcEEECCCCCCceeecCC-CceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeecc
Confidence 2222233222222222111111 122344567888888888766544 59999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHhhcCC-ccEEEecCcccccCCCC---------------CccEEEEeCCCCCHhHHHHHhcccCCCCC
Q 001261 747 AKDQTDRESTISDFKSNV-CNLLIATSVAARGLDVK---------------ELELVINFDAPNHYEDYVHRVGRTGRAGR 810 (1112)
Q Consensus 747 ~~~~~~R~~~~~~F~~g~-~~VLVaT~v~~~GlDi~---------------~v~~VI~~d~p~s~~~y~QriGR~gR~G~ 810 (1112)
.-...+ ..++. ..|. ..|.|||++|+||.||. +=-+||--..+.|--.-.|-.||+||-|.
T Consensus 460 k~~~~E-A~IIa--~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGD 536 (764)
T PRK12326 460 KNDAEE-ARIIA--EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGD 536 (764)
T ss_pred CchHhH-HHHHH--hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCC
Confidence 754333 33332 2454 46999999999999997 33478888888898888999999999999
Q ss_pred ccEEEEEecCCcc
Q 001261 811 KGCAITFISEEDA 823 (1112)
Q Consensus 811 ~g~~i~~~~~~d~ 823 (1112)
+|.+..|++-+|.
T Consensus 537 pGss~f~lSleDd 549 (764)
T PRK12326 537 PGSSVFFVSLEDD 549 (764)
T ss_pred CCceeEEEEcchh
Confidence 9999999986654
|
|
| >PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.1e-18 Score=195.58 Aligned_cols=292 Identities=18% Similarity=0.204 Sum_probs=221.7
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhh-------------cCce------EEEEeCCCChHHHHHHHhcC----------
Q 001261 540 GPVGLIMAPTRELVQQIHSDIRKFAKV-------------MGVR------CVPVYGGSGVAQQISELKRG---------- 590 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~-------------~~i~------~~~~~gg~~~~~~~~~l~~~---------- 590 (1112)
.|+||||||+|..|..+.+.+..++.. +|+. ..........+.+...+..|
T Consensus 37 RPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlGi 116 (442)
T PF06862_consen 37 RPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLGI 116 (442)
T ss_pred CceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEeE
Confidence 599999999999999998888776644 1210 00001111233333333332
Q ss_pred ---------------CeEEEeCchHHHHHHHhc---CCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCCC----
Q 001261 591 ---------------TEIVVCTPGRMIDILCTS---GGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD---- 648 (1112)
Q Consensus 591 ---------------~~IvV~Tp~~L~~~l~~~---~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~---- 648 (1112)
+|||||+|-.|...+... ......|++|.++|||.||.|+ |+.|.++..|+.+++..
T Consensus 117 k~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~-MQNW~Hv~~v~~~lN~~P~~~ 195 (442)
T PF06862_consen 117 KFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLL-MQNWEHVLHVFEHLNLQPKKS 195 (442)
T ss_pred EEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHH-HhhHHHHHHHHHHhccCCCCC
Confidence 699999999998888752 2223348999999999999776 78899999998877432
Q ss_pred --------------------CcEEEEeccccHHHHHHHHHhcCCC---eEEEEcCc-----ccccCCccEEEEecc----
Q 001261 649 --------------------RQTVLFSATFPRQVEILARKVLNKP---VEIQVGGR-----SVVNKDITQLVEVRP---- 696 (1112)
Q Consensus 649 --------------------~q~il~SAT~~~~~~~l~~~~~~~p---~~i~i~~~-----~~~~~~i~q~~~~~~---- 696 (1112)
+|+|+||+...+.+..+....+.|. +.+..... ..+...+.|.+.-.+
T Consensus 196 ~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~ 275 (442)
T PF06862_consen 196 HDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSP 275 (442)
T ss_pred CCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCc
Confidence 7999999999999999999877765 22222222 234456777775332
Q ss_pred ---cchhHHHHHHHHHhhh----cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEE
Q 001261 697 ---ESDRFLRLLELLGEWY----EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLI 769 (1112)
Q Consensus 697 ---~~~k~~~ll~~l~~~~----~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLV 769 (1112)
.+.++..+...+...+ ..+.+|||+++.-+...|.++|.+.++.++.+|...++.+-..+...|..|...||+
T Consensus 276 ~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL 355 (442)
T PF06862_consen 276 ADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILL 355 (442)
T ss_pred chhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEE
Confidence 3456666666433322 346899999999999999999999999999999999999999999999999999999
Q ss_pred ecCccc--ccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCC------ccEEEEEecCCccCchHHHHHH
Q 001261 770 ATSVAA--RGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGR------KGCAITFISEEDAKYSPDLVKA 832 (1112)
Q Consensus 770 aT~v~~--~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~------~g~~i~~~~~~d~~~~~~i~~~ 832 (1112)
.|.-+. +-..|.++..||+|.+|.++..|...+.-.+.... ...|.+||+..|...++.|+-.
T Consensus 356 ~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVGt 426 (442)
T PF06862_consen 356 YTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVGT 426 (442)
T ss_pred EEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhCH
Confidence 999887 78999999999999999999999888866554432 5789999999998888887743
|
; GO: 0005634 nucleus |
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.2e-18 Score=210.46 Aligned_cols=322 Identities=18% Similarity=0.195 Sum_probs=190.9
Q ss_pred ChHHHHHHHHHHH----c------CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHH
Q 001261 490 PMPIQAQALPVIM----S------GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSD 559 (1112)
Q Consensus 490 pt~iQ~~ai~~il----~------g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~ 559 (1112)
|.++|..|+..++ . .+..|++.+||||||++++..+...+.. ...+++|||||+.+|..|+...
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~------~~~~~vl~lvdR~~L~~Q~~~~ 312 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALEL------LKNPKVFFVVDRRELDYQLMKE 312 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhh------cCCCeEEEEECcHHHHHHHHHH
Confidence 6789999988764 2 2568999999999999876665544321 2468999999999999999999
Q ss_pred HHHHhhhcCceEEEEeCCCChHHHHHHHhc-CCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHH
Q 001261 560 IRKFAKVMGVRCVPVYGGSGVAQQISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQI 638 (1112)
Q Consensus 560 ~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i 638 (1112)
|..+... +..+..+.......+.. ...|+|+|...|...+.........-..--+||+||||+... ..+
T Consensus 313 f~~~~~~------~~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~----~~~ 382 (667)
T TIGR00348 313 FQSLQKD------CAERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY----GEL 382 (667)
T ss_pred HHhhCCC------CCcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc----hHH
Confidence 9887531 11111222222233332 368999999999764432111111101113899999998542 234
Q ss_pred HHHHHhcCCCCcEEEEeccccHHHHHHH-HHh---cCCCeEEEEcCcccccCCcc----EE-E----Eec----------
Q 001261 639 TRIVQNIRPDRQTVLFSATFPRQVEILA-RKV---LNKPVEIQVGGRSVVNKDIT----QL-V----EVR---------- 695 (1112)
Q Consensus 639 ~~il~~~~~~~q~il~SAT~~~~~~~l~-~~~---~~~p~~i~i~~~~~~~~~i~----q~-~----~~~---------- 695 (1112)
..++...-++...|+||||+-....... ..+ ++.++.. ..-...+...+. .. . .+.
T Consensus 383 ~~~l~~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~-Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~ 461 (667)
T TIGR00348 383 AKNLKKALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHR-YFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDE 461 (667)
T ss_pred HHHHHhhCCCCcEEEEeCCCcccccccccccccCCCCCeEEE-eeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHH
Confidence 4444333356789999999853211000 111 1122211 100000000000 00 0 000
Q ss_pred -----c-----------------------cchhHHHHHHHHHhhh----c--CCeEEEEeCCHHHHHHHHHHHHhc----
Q 001261 696 -----P-----------------------ESDRFLRLLELLGEWY----E--KGKILIFVHSQEKCDALFRDLLKH---- 737 (1112)
Q Consensus 696 -----~-----------------------~~~k~~~ll~~l~~~~----~--~~~vLIF~~s~~~~~~l~~~L~~~---- 737 (1112)
+ ....+..+...+...+ . .++++|||.++..|..+...|...
T Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~ 541 (667)
T TIGR00348 462 IFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEK 541 (667)
T ss_pred HHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccc
Confidence 0 0001111122222111 1 379999999999999999988664
Q ss_pred -CCCeeeecCCCCHH---------------------HHHHHHHHhhc-CCccEEEecCcccccCCCCCccEEEEeCCCCC
Q 001261 738 -GYPCLSLHGAKDQT---------------------DRESTISDFKS-NVCNLLIATSVAARGLDVKELELVINFDAPNH 794 (1112)
Q Consensus 738 -g~~~~~ihg~~~~~---------------------~R~~~~~~F~~-g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s 794 (1112)
+..++.+++..... ....++..|++ +..+|||.++++.+|+|+|.+++++..-+-.+
T Consensus 542 ~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~ 621 (667)
T TIGR00348 542 FEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKY 621 (667)
T ss_pred cCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEeccccc
Confidence 34566677654332 12468889976 67899999999999999999999997665554
Q ss_pred HhHHHHHhcccCCC-C--C-ccEEEEEecCCccCchHHHHHHHh
Q 001261 795 YEDYVHRVGRTGRA-G--R-KGCAITFISEEDAKYSPDLVKALE 834 (1112)
Q Consensus 795 ~~~y~QriGR~gR~-G--~-~g~~i~~~~~~d~~~~~~i~~~l~ 834 (1112)
..++|.+||+.|. + + .|.++-|+.. ...|.++|.
T Consensus 622 -h~LlQai~R~nR~~~~~K~~g~IvDy~g~-----~~~l~~Al~ 659 (667)
T TIGR00348 622 -HGLLQAIARTNRIDGKDKTFGLIVDYRGL-----EKSLIDALS 659 (667)
T ss_pred -cHHHHHHHHhccccCCCCCCEEEEECcCh-----HHHHHHHHH
Confidence 4689999999994 3 2 2444444432 345555553
|
Members of this family are assumed to differ from each other in DNA site specificity. |
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.6e-18 Score=204.11 Aligned_cols=322 Identities=18% Similarity=0.206 Sum_probs=216.4
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+| ..|+++|..+--++.. .-|....||+|||+++++|++...+. |..|.||+||--||.|.+.++..++
T Consensus 79 lG-m~~ydVQliGg~~Lh~--G~iaEM~TGEGKTLvA~l~a~l~al~--------G~~VhvvT~ndyLA~RD~e~m~~l~ 147 (913)
T PRK13103 79 MG-MRHFDVQLIGGMTLHE--GKIAEMRTGEGKTLVGTLAVYLNALS--------GKGVHVVTVNDYLARRDANWMRPLY 147 (913)
T ss_pred hC-CCcchhHHHhhhHhcc--CccccccCCCCChHHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 55 4677888766555544 45888999999999999999876554 7789999999999999999999999
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHH-HHHHHhcC---CcccccCCceEEEeccchhhh-ccC------
Q 001261 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM-IDILCTSG---GKITNLRRVTYLVMDEADRMF-DMG------ 633 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L-~~~l~~~~---~~~~~l~~i~~vViDEah~~~-~~g------ 633 (1112)
..+|+.+.++.++.+..+....+. ++|+|||..-| .|+|..+- ........+.|+||||+|.+| |..
T Consensus 148 ~~lGl~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLII 225 (913)
T PRK13103 148 EFLGLSVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLII 225 (913)
T ss_pred cccCCEEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceee
Confidence 999999999988887666544444 89999999886 33332210 001124778999999999764 210
Q ss_pred ---------ChhHHHHHHHhcCC--------------------CC-----------------------------------
Q 001261 634 ---------FEPQITRIVQNIRP--------------------DR----------------------------------- 649 (1112)
Q Consensus 634 ---------f~~~i~~il~~~~~--------------------~~----------------------------------- 649 (1112)
+...+..++..+.. .+
T Consensus 226 Sg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~ 305 (913)
T PRK13103 226 SGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLG 305 (913)
T ss_pred cCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhH
Confidence 11112222222210 00
Q ss_pred --------------------------------------------------------------------------------
Q 001261 650 -------------------------------------------------------------------------------- 649 (1112)
Q Consensus 650 -------------------------------------------------------------------------------- 649 (1112)
T Consensus 306 ~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~ 385 (913)
T PRK13103 306 LLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYN 385 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcc
Confidence
Q ss_pred cEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcC-CeEEEEeCCHHHHH
Q 001261 650 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEK-GKILIFVHSQEKCD 728 (1112)
Q Consensus 650 q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~-~~vLIF~~s~~~~~ 728 (1112)
.+.+||+|....... ...+++-++.+.....+........ .++.....|+..++..+...... .+|||-+.|++..+
T Consensus 386 kLsGMTGTa~te~~E-f~~iY~l~Vv~IPTnkP~~R~D~~d-~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE 463 (913)
T PRK13103 386 KLSGMTGTADTEAFE-FRQIYGLDVVVIPPNKPLARKDFND-LVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSE 463 (913)
T ss_pred hhccCCCCCHHHHHH-HHHHhCCCEEECCCCCCcccccCCC-eEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHH
Confidence 122222222211111 1122222222222222222111211 23344567888888888776654 49999999999999
Q ss_pred HHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCC-ccEEEecCcccccCCCC--------------------------
Q 001261 729 ALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNV-CNLLIATSVAARGLDVK-------------------------- 781 (1112)
Q Consensus 729 ~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~-~~VLVaT~v~~~GlDi~-------------------------- 781 (1112)
.|+..|...|++.-+++......+ ..++. ..|. ..|.|||++|+||.||.
T Consensus 464 ~ls~~L~~~gi~h~VLNAk~~~~E-A~IIa--~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~ 540 (913)
T PRK13103 464 HMSNLLKKEGIEHKVLNAKYHEKE-AEIIA--QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKAD 540 (913)
T ss_pred HHHHHHHHcCCcHHHhccccchhH-HHHHH--cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHH
Confidence 999999999999888888644333 22332 3553 56999999999999995
Q ss_pred -----------CccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccC
Q 001261 782 -----------ELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAK 824 (1112)
Q Consensus 782 -----------~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~ 824 (1112)
+=-+||--..+.|----.|-.||+||-|.+|.+..|++-+|.-
T Consensus 541 ~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~L 594 (913)
T PRK13103 541 WQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDSL 594 (913)
T ss_pred HHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHH
Confidence 2346777778888888889999999999999999999876543
|
|
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-18 Score=204.26 Aligned_cols=298 Identities=20% Similarity=0.215 Sum_probs=195.3
Q ss_pred CCChHHHHHHHHHHH----cC-CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH
Q 001261 488 EKPMPIQAQALPVIM----SG-RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il----~g-~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~ 562 (1112)
..|+.+|..||..+. .| +.+|+++.||+|||.+++..+...+.. +.-.++|+|+-++.|+.|.+..+..
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~------~~~KRVLFLaDR~~Lv~QA~~af~~ 237 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKS------GWVKRVLFLADRNALVDQAYGAFED 237 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhc------chhheeeEEechHHHHHHHHHHHHH
Confidence 468999999998765 44 348999999999998876655554443 3467899999999999999999888
Q ss_pred HhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcC--CcccccCCceEEEeccchhhhccCChhHHHH
Q 001261 563 FAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSG--GKITNLRRVTYLVMDEADRMFDMGFEPQITR 640 (1112)
Q Consensus 563 ~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~--~~~~~l~~i~~vViDEah~~~~~gf~~~i~~ 640 (1112)
+... +-.+..+.+.... ..+.|.|+|+..|...+.... ...+....+++||||||||-. ......
T Consensus 238 ~~P~-~~~~n~i~~~~~~--------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi----~~~~~~ 304 (875)
T COG4096 238 FLPF-GTKMNKIEDKKGD--------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI----YSEWSS 304 (875)
T ss_pred hCCC-ccceeeeecccCC--------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH----HhhhHH
Confidence 7654 2222222221111 148999999999988876542 122344568999999999843 444557
Q ss_pred HHHhcCCCCcEEEEeccccHHHHHHHHHhc-CCCeEEEE----------------------cCcccccCCc----c----
Q 001261 641 IVQNIRPDRQTVLFSATFPRQVEILARKVL-NKPVEIQV----------------------GGRSVVNKDI----T---- 689 (1112)
Q Consensus 641 il~~~~~~~q~il~SAT~~~~~~~l~~~~~-~~p~~i~i----------------------~~~~~~~~~i----~---- 689 (1112)
|+.++..-. +++|||+...+..---.|+ +.|+...- ...+...... .
T Consensus 305 I~dYFdA~~--~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~ 382 (875)
T COG4096 305 ILDYFDAAT--QGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGE 382 (875)
T ss_pred HHHHHHHHH--HhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhcc
Confidence 777665433 3449998654433323333 44433221 0000000000 0
Q ss_pred ------EEEEecc------cchhHHHHHHHHHhhhc-------CCeEEEEeCCHHHHHHHHHHHHhc-----CCCeeeec
Q 001261 690 ------QLVEVRP------ESDRFLRLLELLGEWYE-------KGKILIFVHSQEKCDALFRDLLKH-----GYPCLSLH 745 (1112)
Q Consensus 690 ------q~~~~~~------~~~k~~~ll~~l~~~~~-------~~~vLIF~~s~~~~~~l~~~L~~~-----g~~~~~ih 745 (1112)
+.+...+ -......+...|..+.. .+++||||.+..+|+.+...|... |--|..|.
T Consensus 383 ~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT 462 (875)
T COG4096 383 AIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKIT 462 (875)
T ss_pred ccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEe
Confidence 0000000 00011122233333222 358999999999999999999764 34477788
Q ss_pred CCCCHHHHHHHHHHhhc--CCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCC
Q 001261 746 GAKDQTDRESTISDFKS--NVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRA 808 (1112)
Q Consensus 746 g~~~~~~R~~~~~~F~~--g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~ 808 (1112)
|.-.+.. ..+..|.. --..|.|+.+++.+|||+|.|.++|++-.-.|..-|.|++||+-|.
T Consensus 463 ~d~~~~q--~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 463 GDAEQAQ--ALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred ccchhhH--HHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 8665543 34666654 2357888999999999999999999999999999999999999984
|
|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.8e-18 Score=179.03 Aligned_cols=188 Identities=39% Similarity=0.646 Sum_probs=156.8
Q ss_pred HCCCCCChHHHHHHHHHHHcC-CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH
Q 001261 484 KLNYEKPMPIQAQALPVIMSG-RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 484 ~~~~~~pt~iQ~~ai~~il~g-~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~ 562 (1112)
..++..|+++|.++++.++.. +.+++.++||+|||++++.+++.++.... ...+||++||..++.|+...+..
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~------~~~~l~~~p~~~~~~~~~~~~~~ 76 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK------GKRVLVLVPTRELAEQWAEELKK 76 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC------CCcEEEEeCCHHHHHHHHHHHHH
Confidence 356788999999999999999 99999999999999999999998876532 45799999999999999999998
Q ss_pred HhhhcCceEEEEeCCCChHHHHHHHhcCC-eEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHH
Q 001261 563 FAKVMGVRCVPVYGGSGVAQQISELKRGT-EIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRI 641 (1112)
Q Consensus 563 ~~~~~~i~~~~~~gg~~~~~~~~~l~~~~-~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~i 641 (1112)
++..........+++......+..+..+. +|+++|++.|.+.+.... ..+..+.+|||||+|.+....+...+..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~---~~~~~~~~iIiDE~h~~~~~~~~~~~~~~ 153 (201)
T smart00487 77 LGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL---LELSNVDLVILDEAHRLLDGGFGDQLEKL 153 (201)
T ss_pred HhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC---cCHhHCCEEEEECHHHHhcCCcHHHHHHH
Confidence 87665545566677776566666666666 999999999998886543 35667889999999998865788888888
Q ss_pred HHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcC
Q 001261 642 VQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGG 680 (1112)
Q Consensus 642 l~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~ 680 (1112)
+..+++..+++++|||++..+...+..++.+++.+....
T Consensus 154 ~~~~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 154 LKLLPKNVQLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred HHhCCccceEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 888888899999999999999999999988777666543
|
|
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.3e-17 Score=194.48 Aligned_cols=322 Identities=20% Similarity=0.256 Sum_probs=216.0
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+|+ .|+++|.-+.-++..| .|....||-|||+++.+|++-+.+. |..|-||+..--||..=..++..++
T Consensus 75 lG~-r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL~--------GkgVhVVTvNdYLA~RDae~mg~vy 143 (925)
T PRK12903 75 LGK-RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNALT--------GKGVIVSTVNEYLAERDAEEMGKVF 143 (925)
T ss_pred hCC-CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHhc--------CCceEEEecchhhhhhhHHHHHHHH
Confidence 554 6888888887776666 4789999999999999999765443 5567788888999999999999999
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHH-HHHHHhcCC---cccccCCceEEEeccchhhh-ccC------
Q 001261 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM-IDILCTSGG---KITNLRRVTYLVMDEADRMF-DMG------ 633 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L-~~~l~~~~~---~~~~l~~i~~vViDEah~~~-~~g------ 633 (1112)
..+|+.|.++..+....+..... .|+|++||..-| .++|..+-. ...-...+.|.||||+|.++ |..
T Consensus 144 ~fLGLsvG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLII 221 (925)
T PRK12903 144 NFLGLSVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLII 221 (925)
T ss_pred HHhCCceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccc
Confidence 99999999998877666544443 489999999876 334432210 01124678899999999753 211
Q ss_pred ---------ChhHHHHHHHhcCCC-------Cc-----------------------------------------------
Q 001261 634 ---------FEPQITRIVQNIRPD-------RQ----------------------------------------------- 650 (1112)
Q Consensus 634 ---------f~~~i~~il~~~~~~-------~q----------------------------------------------- 650 (1112)
+...+..++..+... ..
T Consensus 222 Sg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~ 301 (925)
T PRK12903 222 SGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDV 301 (925)
T ss_pred cCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCC
Confidence 111222222222210 11
Q ss_pred --------------------------------------------------------------EEEEeccccHHHHHHHHH
Q 001261 651 --------------------------------------------------------------TVLFSATFPRQVEILARK 668 (1112)
Q Consensus 651 --------------------------------------------------------------~il~SAT~~~~~~~l~~~ 668 (1112)
+.+||+|.-.....|. .
T Consensus 302 dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~-~ 380 (925)
T PRK12903 302 EYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFI-D 380 (925)
T ss_pred ceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHH-H
Confidence 2223333222222221 1
Q ss_pred hcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCC
Q 001261 669 VLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGA 747 (1112)
Q Consensus 669 ~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~ 747 (1112)
+++-.+.+.+...+........ ..+.....|+..++..+..... +.+|||.|.|+...+.|+..|.+.|++..+++..
T Consensus 381 iY~l~Vv~IPTnkP~~R~D~~d-~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk 459 (925)
T PRK12903 381 IYNMRVNVVPTNKPVIRKDEPD-SIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAK 459 (925)
T ss_pred HhCCCEEECCCCCCeeeeeCCC-cEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeeccc
Confidence 2222222221111111111111 2234456788888888876654 4599999999999999999999999999999986
Q ss_pred CCHHHHHHHHHHhhcCC-ccEEEecCcccccCCCCCcc--------EEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEe
Q 001261 748 KDQTDRESTISDFKSNV-CNLLIATSVAARGLDVKELE--------LVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFI 818 (1112)
Q Consensus 748 ~~~~~R~~~~~~F~~g~-~~VLVaT~v~~~GlDi~~v~--------~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~ 818 (1112)
-. .++..+-. ..|. ..|.|||++|+||.||.--. +||....|.|----.|-.||+||.|.+|.+..|+
T Consensus 460 ~~--e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~l 536 (925)
T PRK12903 460 QN--AREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFI 536 (925)
T ss_pred ch--hhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEE
Confidence 43 33322222 4564 57999999999999997432 8898889988888889999999999999999998
Q ss_pred cCCccC
Q 001261 819 SEEDAK 824 (1112)
Q Consensus 819 ~~~d~~ 824 (1112)
+-.|.-
T Consensus 537 SLeD~L 542 (925)
T PRK12903 537 SLDDQL 542 (925)
T ss_pred ecchHH
Confidence 866543
|
|
| >KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.8e-17 Score=196.82 Aligned_cols=319 Identities=20% Similarity=0.255 Sum_probs=200.8
Q ss_pred CChHHHHHHHHHHHc---C-------CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHH
Q 001261 489 KPMPIQAQALPVIMS---G-------RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHS 558 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~---g-------~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~ 558 (1112)
.++|+|.+++..+.. | ..+|+...+|+|||++.+..|...+...| ....--.++|||||. .|+.-|++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P-~~~~~~~k~lVV~P~-sLv~nWkk 315 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFP-QAKPLINKPLVVAPS-SLVNNWKK 315 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCc-CccccccccEEEccH-HHHHHHHH
Confidence 466999999988752 2 24677789999999986655555554433 211223578999995 68899999
Q ss_pred HHHHHhhhcCceEEEEeCCCCh--HHHHHHH-----hcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhc
Q 001261 559 DIRKFAKVMGVRCVPVYGGSGV--AQQISEL-----KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD 631 (1112)
Q Consensus 559 ~~~~~~~~~~i~~~~~~gg~~~--~~~~~~l-----~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~ 631 (1112)
+|.+|.....+....++|+... ..+...+ .-..-|++.+++.+.+.+.. ..+..+++||+||.|++-+
T Consensus 316 EF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~-----il~~~~glLVcDEGHrlkN 390 (776)
T KOG0390|consen 316 EFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK-----ILLIRPGLLVCDEGHRLKN 390 (776)
T ss_pred HHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH-----HhcCCCCeEEECCCCCccc
Confidence 9999987666777888888764 1111111 11246788888888766543 4566789999999999765
Q ss_pred cCChhHHHHHHHhcCCCCcEEEEecccc-HHHH-----------------------------------------------
Q 001261 632 MGFEPQITRIVQNIRPDRQTVLFSATFP-RQVE----------------------------------------------- 663 (1112)
Q Consensus 632 ~gf~~~i~~il~~~~~~~q~il~SAT~~-~~~~----------------------------------------------- 663 (1112)
. ...+...+..+... .-|++|+|+- +++.
T Consensus 391 ~--~s~~~kaL~~l~t~-rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl 467 (776)
T KOG0390|consen 391 S--DSLTLKALSSLKTP-RRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERL 467 (776)
T ss_pred h--hhHHHHHHHhcCCC-ceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHH
Confidence 3 23444444455333 3566777741 1111
Q ss_pred ----HHHHHh-----------------------------------------------------------cCCCeEEEEcC
Q 001261 664 ----ILARKV-----------------------------------------------------------LNKPVEIQVGG 680 (1112)
Q Consensus 664 ----~l~~~~-----------------------------------------------------------~~~p~~i~i~~ 680 (1112)
.+...| ++.|..+....
T Consensus 468 ~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~ 547 (776)
T KOG0390|consen 468 QELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCE 547 (776)
T ss_pred HHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccc
Confidence 111111 11111100000
Q ss_pred cc-----cccCC-ccEE--EEe----cccchhHHHHHHHHHhhhcC--CeEEEEeCCHHHHHHHHHHHHhcCCCeeeecC
Q 001261 681 RS-----VVNKD-ITQL--VEV----RPESDRFLRLLELLGEWYEK--GKILIFVHSQEKCDALFRDLLKHGYPCLSLHG 746 (1112)
Q Consensus 681 ~~-----~~~~~-i~q~--~~~----~~~~~k~~~ll~~l~~~~~~--~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg 746 (1112)
.. ..+.. ..+. +.. .....++..|..+|...... ..+++..|.....+.+...+.-.|+.++.+||
T Consensus 548 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG 627 (776)
T KOG0390|consen 548 KTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDG 627 (776)
T ss_pred cccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcC
Confidence 00 00000 0000 000 00122444444444332211 13334445555555555555556999999999
Q ss_pred CCCHHHHHHHHHHhhcCC---ccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEE
Q 001261 747 AKDQTDRESTISDFKSNV---CNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITF 817 (1112)
Q Consensus 747 ~~~~~~R~~~~~~F~~g~---~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~ 817 (1112)
.|+..+|..++..|.+-. .-+|.+|.+.+.||++-+++.||.||++|+|+.-.|.++|+.|.|++-.||+|
T Consensus 628 ~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 628 KTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIY 701 (776)
T ss_pred CCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEE
Confidence 999999999999998543 34677888999999999999999999999999999999999999998777664
|
|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-16 Score=200.76 Aligned_cols=328 Identities=19% Similarity=0.247 Sum_probs=205.6
Q ss_pred CCCCCChHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHH-HHH
Q 001261 485 LNYEKPMPIQAQALPVIM----SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQI-HSD 559 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il----~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~-~~~ 559 (1112)
.|| .+++-|.+.+..|. .+..+++.|+||+|||++|++|++... .++++||++||++|+.|+ ...
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~---------~~~~vvI~t~T~~Lq~Ql~~~~ 311 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS---------DQRQIIVSVPTKILQDQIMAEE 311 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc---------CCCcEEEEeCcHHHHHHHHHHH
Confidence 344 68999998665544 567899999999999999999988653 256899999999999999 577
Q ss_pred HHHHhhhcCceEEEEeCCCChH-----HH-----------------------------HHHH------------------
Q 001261 560 IRKFAKVMGVRCVPVYGGSGVA-----QQ-----------------------------ISEL------------------ 587 (1112)
Q Consensus 560 ~~~~~~~~~i~~~~~~gg~~~~-----~~-----------------------------~~~l------------------ 587 (1112)
+..+.+.+++.+.++.|+.+.- .+ +..+
T Consensus 312 i~~l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~ 391 (820)
T PRK07246 312 VKAIQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGN 391 (820)
T ss_pred HHHHHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCC
Confidence 8888888888888888775321 00 0000
Q ss_pred -------------------hcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccC-----Ch-------h
Q 001261 588 -------------------KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG-----FE-------P 636 (1112)
Q Consensus 588 -------------------~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~g-----f~-------~ 636 (1112)
...++|||+++..|+..+.... .+..+.+|||||||+|.+.. .. .
T Consensus 392 ~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~----~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~ 467 (820)
T PRK07246 392 LSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK----DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQ 467 (820)
T ss_pred CCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc----CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHH
Confidence 0125899999998877664432 35678999999999874311 00 0
Q ss_pred HH-------------------------------------------------------------HHHHHh------c----
Q 001261 637 QI-------------------------------------------------------------TRIVQN------I---- 645 (1112)
Q Consensus 637 ~i-------------------------------------------------------------~~il~~------~---- 645 (1112)
.+ ..++.. +
T Consensus 468 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~ 547 (820)
T PRK07246 468 TIQKALSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEK 547 (820)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 00 000000 0
Q ss_pred -----------------------CCCCcEEEEecccc--HHHHHHHHHhcC-CCeEEEEcCcccccCCccEEEEec---c
Q 001261 646 -----------------------RPDRQTVLFSATFP--RQVEILARKVLN-KPVEIQVGGRSVVNKDITQLVEVR---P 696 (1112)
Q Consensus 646 -----------------------~~~~q~il~SAT~~--~~~~~l~~~~~~-~p~~i~i~~~~~~~~~i~q~~~~~---~ 696 (1112)
+....+|++|||++ +... +...+.- ......+. ..... .+.+.+. +
T Consensus 548 ~~~~~~~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~-~~~~lGl~~~~~~~~~---~~~~~-~~~~~i~~~~p 622 (820)
T PRK07246 548 QSEKRVTYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRVS-LADLLGFEEYLFHKIE---KDKKQ-DQLVVVDQDMP 622 (820)
T ss_pred CCCcceeEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCc-HHHHcCCCccceecCC---CChHH-ccEEEeCCCCC
Confidence 01135788899985 2222 3322221 11111111 11111 1111111 1
Q ss_pred ------cchhHHHHHHHHHhhh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEE
Q 001261 697 ------ESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLI 769 (1112)
Q Consensus 697 ------~~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLV 769 (1112)
.......+...|.... .+|++|||++|....+.++..|....+.+ ...|... .+..+++.|+.+...||+
T Consensus 623 ~~~~~~~~~~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLl 699 (820)
T PRK07246 623 LVTETSDEVYAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILL 699 (820)
T ss_pred CCCCCChHHHHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEE
Confidence 1122334444443322 46899999999999999999997665555 4444322 246689999999899999
Q ss_pred ecCcccccCCCCC--ccEEEEeCCCC----C--------------------------HhHHHHHhcccCCCCCccEEEEE
Q 001261 770 ATSVAARGLDVKE--LELVINFDAPN----H--------------------------YEDYVHRVGRTGRAGRKGCAITF 817 (1112)
Q Consensus 770 aT~v~~~GlDi~~--v~~VI~~d~p~----s--------------------------~~~y~QriGR~gR~G~~g~~i~~ 817 (1112)
+|..+.+|||+|+ ...||+..+|. + ...+.|.+||.-|....--++++
T Consensus 700 G~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~i 779 (820)
T PRK07246 700 GLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLI 779 (820)
T ss_pred ecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEE
Confidence 9999999999974 56667766653 2 12235999999998653334555
Q ss_pred ecCC--ccCchHHHHHHHh
Q 001261 818 ISEE--DAKYSPDLVKALE 834 (1112)
Q Consensus 818 ~~~~--d~~~~~~i~~~l~ 834 (1112)
+++. ...+-..+.+.|.
T Consensus 780 lD~R~~~k~Yg~~~l~sLP 798 (820)
T PRK07246 780 LDRRILTKSYGKQILASLA 798 (820)
T ss_pred ECCcccccHHHHHHHHhCC
Confidence 5543 3445566666664
|
|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-17 Score=198.47 Aligned_cols=322 Identities=20% Similarity=0.287 Sum_probs=210.5
Q ss_pred CChHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCc-EEEEccchhHHHHHHHHHHHH
Q 001261 489 KPMPIQAQALPVIM----SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPV-GLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il----~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~-~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
.++.||++.++++. -+=+.|+|..+|.|||++.+-.+.......+.......+. .|||||. .|+--|..++.+|
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 45789999999875 2347899999999999976655554443332212222233 7999995 7999999999999
Q ss_pred hhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHH
Q 001261 564 AKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ 643 (1112)
Q Consensus 564 ~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~ 643 (1112)
+.. +++...+|+......+..-.+..+|||++|+.+.+-+.. +.-..+.|+|+||-|-|-+. ...+.+.++
T Consensus 1054 ~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~-----l~~~~wNYcVLDEGHVikN~--ktkl~kavk 1124 (1549)
T KOG0392|consen 1054 FPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY-----LIKIDWNYCVLDEGHVIKNS--KTKLTKAVK 1124 (1549)
T ss_pred cch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH-----HHhcccceEEecCcceecch--HHHHHHHHH
Confidence 886 455555565544444444445689999999988543321 11235789999999987653 345556666
Q ss_pred hcCCCCcEEEEecccc-HHHH---HHHHHh--------------------------------------------------
Q 001261 644 NIRPDRQTVLFSATFP-RQVE---ILARKV-------------------------------------------------- 669 (1112)
Q Consensus 644 ~~~~~~q~il~SAT~~-~~~~---~l~~~~-------------------------------------------------- 669 (1112)
.++... .+++|+|+- +++. .+..++
T Consensus 1125 qL~a~h-RLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~ 1203 (1549)
T KOG0392|consen 1125 QLRANH-RLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFL 1203 (1549)
T ss_pred HHhhcc-eEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHH
Confidence 666555 355677741 1100 000000
Q ss_pred --------cCC-C-----------------------------eEEEEcCc--cccc--CCccE------------EEEec
Q 001261 670 --------LNK-P-----------------------------VEIQVGGR--SVVN--KDITQ------------LVEVR 695 (1112)
Q Consensus 670 --------~~~-p-----------------------------~~i~i~~~--~~~~--~~i~q------------~~~~~ 695 (1112)
+.+ | +...+.+. +... ..|.| .+...
T Consensus 1204 LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt 1283 (1549)
T KOG0392|consen 1204 LRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLT 1283 (1549)
T ss_pred HHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeC
Confidence 000 0 00000000 0000 00000 00000
Q ss_pred -----------------------ccchhHHHHHHHHHhhh---------------cCCeEEEEeCCHHHHHHHHHHHHhc
Q 001261 696 -----------------------PESDRFLRLLELLGEWY---------------EKGKILIFVHSQEKCDALFRDLLKH 737 (1112)
Q Consensus 696 -----------------------~~~~k~~~ll~~l~~~~---------------~~~~vLIF~~s~~~~~~l~~~L~~~ 737 (1112)
....|+..|-++|.... ...++||||.-+..++.+.+.|.+.
T Consensus 1284 ~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~ 1363 (1549)
T KOG0392|consen 1284 PVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKK 1363 (1549)
T ss_pred CCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhh
Confidence 11234444545554432 1248999999999999999999875
Q ss_pred ---CCCeeeecCCCCHHHHHHHHHHhhcC-CccEEE-ecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCcc
Q 001261 738 ---GYPCLSLHGAKDQTDRESTISDFKSN-VCNLLI-ATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKG 812 (1112)
Q Consensus 738 ---g~~~~~ihg~~~~~~R~~~~~~F~~g-~~~VLV-aT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g 812 (1112)
.+..+.+.|..++.+|.++...|.++ .++||+ +|.|.+-|||+.++++||+++-.|+|-.-+|.+-||+|.|++-
T Consensus 1364 ~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKr 1443 (1549)
T KOG0392|consen 1364 YMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKR 1443 (1549)
T ss_pred hcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCce
Confidence 34456899999999999999999998 678765 6789999999999999999999999999999999999999876
Q ss_pred E--EEEEecCC
Q 001261 813 C--AITFISEE 821 (1112)
Q Consensus 813 ~--~i~~~~~~ 821 (1112)
. +|.|++..
T Consensus 1444 vVNVyRlItrG 1454 (1549)
T KOG0392|consen 1444 VVNVYRLITRG 1454 (1549)
T ss_pred eeeeeeehhcc
Confidence 5 56666653
|
|
| >KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.3e-17 Score=189.23 Aligned_cols=318 Identities=20% Similarity=0.290 Sum_probs=208.9
Q ss_pred ChHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001261 490 PMPIQAQALPVIM----SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 490 pt~iQ~~ai~~il----~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
+-++|.-.++++. .+-+.|+..++|.|||.+.+ +.|..|.... ..||. |||||...| .-|..+|.+||.
T Consensus 400 LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvI-aFlayLkq~g----~~gpH-LVVvPsSTl-eNWlrEf~kwCP 472 (941)
T KOG0389|consen 400 LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVI-AFLAYLKQIG----NPGPH-LVVVPSSTL-ENWLREFAKWCP 472 (941)
T ss_pred ccchhhhhHHHHHHHHHccccceehhhccCcchhHHH-HHHHHHHHcC----CCCCc-EEEecchhH-HHHHHHHHHhCC
Confidence 5689999999875 45677999999999998644 3444444421 23554 999999887 557789999987
Q ss_pred hcCceEEEEeCCCChHHHHHHHh----cCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHH
Q 001261 566 VMGVRCVPVYGGSGVAQQISELK----RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRI 641 (1112)
Q Consensus 566 ~~~i~~~~~~gg~~~~~~~~~l~----~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~i 641 (1112)
. +++.+.||.......+.... .+++|+|+|+.....-- ....++.-.++.++|+||+|.|-+++ ...+..+
T Consensus 473 s--l~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~k--dDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~L 547 (941)
T KOG0389|consen 473 S--LKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSK--DDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKHL 547 (941)
T ss_pred c--eEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCCh--HHHHHHHhccccEEEecchhhhhccc-hHHHHHh
Confidence 4 56666777665555443332 25799999997553100 00011122467899999999987765 1222222
Q ss_pred HHhcCCCCcEEEEecccc-HHHHHH-------------------------------------------------------
Q 001261 642 VQNIRPDRQTVLFSATFP-RQVEIL------------------------------------------------------- 665 (1112)
Q Consensus 642 l~~~~~~~q~il~SAT~~-~~~~~l------------------------------------------------------- 665 (1112)
+ .++ ..+.||+|+|+- +++..|
T Consensus 548 M-~I~-An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFIL 625 (941)
T KOG0389|consen 548 M-SIN-ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFIL 625 (941)
T ss_pred c-ccc-ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHH
Confidence 2 122 334566677731 000000
Q ss_pred -----------------------------------------------------------HHHhcCCCeEEEEcC------
Q 001261 666 -----------------------------------------------------------ARKVLNKPVEIQVGG------ 680 (1112)
Q Consensus 666 -----------------------------------------------------------~~~~~~~p~~i~i~~------ 680 (1112)
.++..++|+.+....
T Consensus 626 RR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~ 705 (941)
T KOG0389|consen 626 RRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLR 705 (941)
T ss_pred HHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHH
Confidence 000000110000000
Q ss_pred ---------cccccC---------------CccE---------EEE----ecccchhHHHHHHHHHhhhcC-CeEEEEeC
Q 001261 681 ---------RSVVNK---------------DITQ---------LVE----VRPESDRFLRLLELLGEWYEK-GKILIFVH 722 (1112)
Q Consensus 681 ---------~~~~~~---------------~i~q---------~~~----~~~~~~k~~~ll~~l~~~~~~-~~vLIF~~ 722 (1112)
...... .+++ .+. ..-.+.|+..|..+|...... .+||||..
T Consensus 706 ~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQ 785 (941)
T KOG0389|consen 706 KMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQ 785 (941)
T ss_pred HHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeH
Confidence 000000 0000 000 011234666666777665554 59999999
Q ss_pred CHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCC--ccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHH
Q 001261 723 SQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNV--CNLLIATSVAARGLDVKELELVINFDAPNHYEDYVH 800 (1112)
Q Consensus 723 s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~--~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Q 800 (1112)
.....+.|..+|...++.++.+.|.....+|..++..|...+ +-+|++|-+.+-|||+..+++||.||+..+|-+-.|
T Consensus 786 FTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~Q 865 (941)
T KOG0389|consen 786 FTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQ 865 (941)
T ss_pred HHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccch
Confidence 999999999999999999999999999999999999998654 567999999999999999999999999999999999
Q ss_pred HhcccCCCCCcc--EEEEEecCC
Q 001261 801 RVGRTGRAGRKG--CAITFISEE 821 (1112)
Q Consensus 801 riGR~gR~G~~g--~~i~~~~~~ 821 (1112)
.--||+|.|+.- ++|.|+++.
T Consensus 866 AEDRcHRvGQtkpVtV~rLItk~ 888 (941)
T KOG0389|consen 866 AEDRCHRVGQTKPVTVYRLITKS 888 (941)
T ss_pred hHHHHHhhCCcceeEEEEEEecC
Confidence 999999999864 466677754
|
|
| >KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-16 Score=174.58 Aligned_cols=326 Identities=15% Similarity=0.188 Sum_probs=219.2
Q ss_pred CCChHHHHHHHHHHH-cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhh
Q 001261 488 EKPMPIQAQALPVIM-SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKV 566 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il-~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~ 566 (1112)
..+.|+|.+.+...+ .|..+|+..++|.|||++++..+..+.... | .|||||.. |-..|.+.+..|+..
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraEw--------p-lliVcPAs-vrftWa~al~r~lps 266 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAEW--------P-LLIVCPAS-VRFTWAKALNRFLPS 266 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhcC--------c-EEEEecHH-HhHHHHHHHHHhccc
Confidence 356799999998776 567788889999999999887666655443 2 48899964 557888999998775
Q ss_pred cCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcC
Q 001261 567 MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646 (1112)
Q Consensus 567 ~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~ 646 (1112)
... +.++.++...... +-....|.|.++..|..+-.. ..-..+.+||+||.|.+-+.. -.....++..+.
T Consensus 267 ~~p-i~vv~~~~D~~~~---~~t~~~v~ivSye~ls~l~~~-----l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk 336 (689)
T KOG1000|consen 267 IHP-IFVVDKSSDPLPD---VCTSNTVAIVSYEQLSLLHDI-----LKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLK 336 (689)
T ss_pred ccc-eEEEecccCCccc---cccCCeEEEEEHHHHHHHHHH-----HhcccceEEEEechhhhhccc-hhhhhhhhhHHH
Confidence 433 5556666544322 223357999999987554322 223348999999999886543 333455555555
Q ss_pred CCCcEEEEecccc-------------------HHHHHHHHHhcCCC---eEEEEcCcc----------------------
Q 001261 647 PDRQTVLFSATFP-------------------RQVEILARKVLNKP---VEIQVGGRS---------------------- 682 (1112)
Q Consensus 647 ~~~q~il~SAT~~-------------------~~~~~l~~~~~~~p---~~i~i~~~~---------------------- 682 (1112)
.-..+||+|+|+. +....|+..|+..- +.....+.+
T Consensus 337 ~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dv 416 (689)
T KOG1000|consen 337 VAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADV 416 (689)
T ss_pred HhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5567999999952 22334555555421 111111100
Q ss_pred --cccCCccEEEEecccc-------------------------------------hhHHHHHHHHHhhh-----cCCeEE
Q 001261 683 --VVNKDITQLVEVRPES-------------------------------------DRFLRLLELLGEWY-----EKGKIL 718 (1112)
Q Consensus 683 --~~~~~i~q~~~~~~~~-------------------------------------~k~~~ll~~l~~~~-----~~~~vL 718 (1112)
..+..-.+.+.+.... .|...+.+.|...+ +..++|
T Consensus 417 L~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~Kfl 496 (689)
T KOG1000|consen 417 LKQLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFL 496 (689)
T ss_pred HhhCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEE
Confidence 0111112222222110 02222333333311 234899
Q ss_pred EEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcC-CccE-EEecCcccccCCCCCccEEEEeCCCCCHh
Q 001261 719 IFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN-VCNL-LIATSVAARGLDVKELELVINFDAPNHYE 796 (1112)
Q Consensus 719 IF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g-~~~V-LVaT~v~~~GlDi~~v~~VI~~d~p~s~~ 796 (1112)
|||.-+...+.+...+...++..+.|.|..+..+|....+.|+.. ++.| +++-.+++.||++....+||+..++|++.
T Consensus 497 VFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPg 576 (689)
T KOG1000|consen 497 VFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPG 576 (689)
T ss_pred EEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCc
Confidence 999999999999999999999999999999999999999999854 4444 55667889999999999999999999999
Q ss_pred HHHHHhcccCCCCCccEEEEEe--cC--CccCchHHHHHHH
Q 001261 797 DYVHRVGRTGRAGRKGCAITFI--SE--EDAKYSPDLVKAL 833 (1112)
Q Consensus 797 ~y~QriGR~gR~G~~g~~i~~~--~~--~d~~~~~~i~~~l 833 (1112)
-.+|.-.|++|.|++..+.+.| .+ -|...+..|.+.|
T Consensus 577 vLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL 617 (689)
T KOG1000|consen 577 VLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKL 617 (689)
T ss_pred eEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHH
Confidence 9999999999999987655444 22 2444444444444
|
|
| >KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3e-17 Score=181.00 Aligned_cols=308 Identities=18% Similarity=0.210 Sum_probs=194.5
Q ss_pred CCChHHHHHHHHHHHcC---CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 488 EKPMPIQAQALPVIMSG---RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g---~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
..++|+|..++..++.+ +..||+-|+|+|||++-+-++.. -...|||||.+-.-+.||...|+.|+
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~t-----------ikK~clvLcts~VSVeQWkqQfk~ws 369 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACT-----------IKKSCLVLCTSAVSVEQWKQQFKQWS 369 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeee-----------ecccEEEEecCccCHHHHHHHHHhhc
Confidence 46789999999998843 68999999999999875544331 14578999999999999999999987
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcC--C---cccccCCceEEEeccchhhhccCChhHHH
Q 001261 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSG--G---KITNLRRVTYLVMDEADRMFDMGFEPQIT 639 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~--~---~~~~l~~i~~vViDEah~~~~~gf~~~i~ 639 (1112)
..-.-.++..+.... .....++.|+|+|+.++..--.+.. . ....-..++++||||+|.+..+-|...+.
T Consensus 370 ti~d~~i~rFTsd~K-----e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVls 444 (776)
T KOG1123|consen 370 TIQDDQICRFTSDAK-----ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLS 444 (776)
T ss_pred ccCccceEEeecccc-----ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHH
Confidence 654444444443331 2244678999999987632110000 0 00122568999999999876555555554
Q ss_pred HHHHhcCCCCcEEEEeccccHHHHHHHH-HhcCCC--------------eEEEEcCcccccC------------Cc--cE
Q 001261 640 RIVQNIRPDRQTVLFSATFPRQVEILAR-KVLNKP--------------VEIQVGGRSVVNK------------DI--TQ 690 (1112)
Q Consensus 640 ~il~~~~~~~q~il~SAT~~~~~~~l~~-~~~~~p--------------~~i~i~~~~~~~~------------~i--~q 690 (1112)
-+-.+. .+++|||+-..-..+.. .|+-.| ....+.-..+.+. +. ..
T Consensus 445 iv~aHc-----KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~ 519 (776)
T KOG1123|consen 445 IVQAHC-----KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRM 519 (776)
T ss_pred HHHHHh-----hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhh
Confidence 444443 47899997433211100 011111 0001100011000 00 11
Q ss_pred EEEecccchhHHHHHHHHHhhh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhh-cCCccEE
Q 001261 691 LVEVRPESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFK-SNVCNLL 768 (1112)
Q Consensus 691 ~~~~~~~~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~-~g~~~VL 768 (1112)
.+.+ -...||...--+|.... .+.++|||..+.-....++-.|.+ -+|+|..+|.+|..|++.|+ +..++-|
T Consensus 520 lLyv-MNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~~vNTI 593 (776)
T KOG1123|consen 520 LLYV-MNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTNPKVNTI 593 (776)
T ss_pred eeee-cCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccCCccceE
Confidence 1111 12234433222222211 356999999988777777666532 36899999999999999999 5567888
Q ss_pred EecCcccccCCCCCccEEEEeCCCC-CHhHHHHHhcccCCCCC------ccEEEEEecCCc
Q 001261 769 IATSVAARGLDVKELELVINFDAPN-HYEDYVHRVGRTGRAGR------KGCAITFISEED 822 (1112)
Q Consensus 769 VaT~v~~~GlDi~~v~~VI~~d~p~-s~~~y~QriGR~gR~G~------~g~~i~~~~~~d 822 (1112)
+-+.|+...||+|.++++|....-. |--+-.||+||+.|+-+ ....|+|++.+.
T Consensus 594 FlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DT 654 (776)
T KOG1123|consen 594 FLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDT 654 (776)
T ss_pred EEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecch
Confidence 8889999999999999999865543 45667899999998632 244566666543
|
|
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.4e-16 Score=173.44 Aligned_cols=121 Identities=24% Similarity=0.326 Sum_probs=100.7
Q ss_pred hHHHHHHHHHhhhcC---CeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCC-cc-EEEecCcc
Q 001261 700 RFLRLLELLGEWYEK---GKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNV-CN-LLIATSVA 774 (1112)
Q Consensus 700 k~~~ll~~l~~~~~~---~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~-~~-VLVaT~v~ 774 (1112)
|+..|.+.|...... -+.|||.......+.+...|.+.|+.|+-+-|+|++..|..+++.|++.. +. +||+-.+.
T Consensus 621 KIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAG 700 (791)
T KOG1002|consen 621 KIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAG 700 (791)
T ss_pred HHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccC
Confidence 445555555443333 37899999999999999999999999999999999999999999999764 44 46777888
Q ss_pred cccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCc--cEEEEEecC
Q 001261 775 ARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRK--GCAITFISE 820 (1112)
Q Consensus 775 ~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~--g~~i~~~~~ 820 (1112)
+..||+..++.|+++|+.|+++.-.|...|+.|.|+. =.++.|+-+
T Consensus 701 GVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iE 748 (791)
T KOG1002|consen 701 GVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIE 748 (791)
T ss_pred ceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehh
Confidence 8999999999999999999999999999999999864 346666654
|
|
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.7e-16 Score=186.09 Aligned_cols=280 Identities=19% Similarity=0.186 Sum_probs=180.8
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+|+ .|+++|.-+.-++ ....|+.+.||.|||+++++|++-..+. |..|-||+++..||.+-+.++..++
T Consensus 73 lG~-r~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL~--------G~~VhVvT~NdyLA~RD~e~m~pvy 141 (870)
T CHL00122 73 LGL-RHFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNALT--------GKGVHIVTVNDYLAKRDQEWMGQIY 141 (870)
T ss_pred hCC-CCCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHHhc--------CCceEEEeCCHHHHHHHHHHHHHHH
Confidence 554 4778777665444 4567889999999999999999755432 6678999999999999999999999
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHH-HHHHhcC---CcccccCCceEEEeccchhhh-ccC------
Q 001261 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMI-DILCTSG---GKITNLRRVTYLVMDEADRMF-DMG------ 633 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~-~~l~~~~---~~~~~l~~i~~vViDEah~~~-~~g------ 633 (1112)
..+|+.|.++.++.+..+..... .|+|+++|..-|. ++|..+- ........+.|+||||+|.|+ |..
T Consensus 142 ~~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLiI 219 (870)
T CHL00122 142 RFLGLTVGLIQEGMSSEERKKNY--LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLII 219 (870)
T ss_pred HHcCCceeeeCCCCChHHHHHhc--CCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCceec
Confidence 99999999999888776654443 3899999997552 3332211 011124668899999999753 210
Q ss_pred ---------ChhHHHHHHHhcCCC--------------------------------------------------------
Q 001261 634 ---------FEPQITRIVQNIRPD-------------------------------------------------------- 648 (1112)
Q Consensus 634 ---------f~~~i~~il~~~~~~-------------------------------------------------------- 648 (1112)
+...+..++..+..+
T Consensus 220 Sg~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~ 299 (870)
T CHL00122 220 SGQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNV 299 (870)
T ss_pred cCCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCC
Confidence 111111111111110
Q ss_pred ------------------------------------------------------------CcEEEEeccccHHHHHHHHH
Q 001261 649 ------------------------------------------------------------RQTVLFSATFPRQVEILARK 668 (1112)
Q Consensus 649 ------------------------------------------------------------~q~il~SAT~~~~~~~l~~~ 668 (1112)
..+.+||+|.......| ..
T Consensus 300 dYiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef-~~ 378 (870)
T CHL00122 300 HYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEF-EK 378 (870)
T ss_pred cEEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHH-HH
Confidence 11344444443322222 33
Q ss_pred hcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCC
Q 001261 669 VLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGA 747 (1112)
Q Consensus 669 ~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~ 747 (1112)
+++-++.+.+...+....... ..++.....|+..++..+..... +.+|||.|.|+...+.|+..|...|++..++++.
T Consensus 379 iY~l~vv~IPtnkp~~R~d~~-d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk 457 (870)
T CHL00122 379 IYNLEVVCIPTHRPMLRKDLP-DLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAK 457 (870)
T ss_pred HhCCCEEECCCCCCccceeCC-CeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCC
Confidence 333333222222222221121 12334455688888877766554 4599999999999999999999999999999986
Q ss_pred CCH-HHHHHHHHHhhcCC-ccEEEecCcccccCCCC
Q 001261 748 KDQ-TDRESTISDFKSNV-CNLLIATSVAARGLDVK 781 (1112)
Q Consensus 748 ~~~-~~R~~~~~~F~~g~-~~VLVaT~v~~~GlDi~ 781 (1112)
-.. ..=..++.. .|. ..|.|||++|+||.||.
T Consensus 458 ~~~~~~EA~IIA~--AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 458 PENVRRESEIVAQ--AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred CccchhHHHHHHh--cCCCCcEEEeccccCCCcCee
Confidence 422 222334433 454 56999999999999984
|
|
| >KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-16 Score=178.64 Aligned_cols=350 Identities=14% Similarity=0.110 Sum_probs=237.8
Q ss_pred HHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHH
Q 001261 480 ETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSD 559 (1112)
Q Consensus 480 ~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~ 559 (1112)
..++.+.-.....+|..+|..+-.|+.+++.-.|.+||.++|.+.....+..-+ ....|++.||.+|+.....-
T Consensus 277 ~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~------~s~~~~~~~~~~~~~~~~~~ 350 (1034)
T KOG4150|consen 277 SLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCH------ATNSLLPSEMVEHLRNGSKG 350 (1034)
T ss_pred HHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCc------ccceecchhHHHHhhccCCc
Confidence 344555556677999999999999999999999999999999988776654422 23458888999987643221
Q ss_pred HHH---HhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcC-CcccccCCceEEEeccchhhhccCCh
Q 001261 560 IRK---FAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSG-GKITNLRRVTYLVMDEADRMFDMGFE 635 (1112)
Q Consensus 560 ~~~---~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~-~~~~~l~~i~~vViDEah~~~~~gf~ 635 (1112)
+.- ..+...-.++-.+.|.+......-+..+..++++.|..++..+.-+. -+...+-...++++||+|..+-. |.
T Consensus 351 ~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~~ 429 (1034)
T KOG4150|consen 351 QVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFP-TK 429 (1034)
T ss_pred eEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecc-hh
Confidence 111 01112223455667776666666667789999999998866543321 12223445668999999954321 22
Q ss_pred h----HHHHHHHhc-----CCCCcEEEEeccccHHHHHHHHHhcCCC-eEEEEcCcccccCCccEEEEeccc--------
Q 001261 636 P----QITRIVQNI-----RPDRQTVLFSATFPRQVEILARKVLNKP-VEIQVGGRSVVNKDITQLVEVRPE-------- 697 (1112)
Q Consensus 636 ~----~i~~il~~~-----~~~~q~il~SAT~~~~~~~l~~~~~~~p-~~i~i~~~~~~~~~i~q~~~~~~~-------- 697 (1112)
. ++..++..+ ..+.|++-.|||+...+......+.-+- ..+++++.+. .-..++.+.+.
T Consensus 430 ~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs---~~K~~V~WNP~~~P~~~~~ 506 (1034)
T KOG4150|consen 430 ALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPS---SEKLFVLWNPSAPPTSKSE 506 (1034)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCC---ccceEEEeCCCCCCcchhh
Confidence 2 223332222 3468999999998776654443333333 3344444332 22333433321
Q ss_pred -chhHHHHHHHHHhhhcCC-eEEEEeCCHHHHHHHHHHHHhc----C----CCeeeecCCCCHHHHHHHHHHhhcCCccE
Q 001261 698 -SDRFLRLLELLGEWYEKG-KILIFVHSQEKCDALFRDLLKH----G----YPCLSLHGAKDQTDRESTISDFKSNVCNL 767 (1112)
Q Consensus 698 -~~k~~~ll~~l~~~~~~~-~vLIF~~s~~~~~~l~~~L~~~----g----~~~~~ihg~~~~~~R~~~~~~F~~g~~~V 767 (1112)
+.++.....++.+....+ ++|-||+++..|+.|....... + -.+..+.||....+|.++....-.|...-
T Consensus 507 ~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~g 586 (1034)
T KOG4150|consen 507 KSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCG 586 (1034)
T ss_pred hhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeE
Confidence 234444445555544444 8999999999999887665432 2 13667899999999999999999999999
Q ss_pred EEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEe--cCCccCchHHHHHHHhhccCC
Q 001261 768 LIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFI--SEEDAKYSPDLVKALELSEQV 839 (1112)
Q Consensus 768 LVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~--~~~d~~~~~~i~~~l~~~~~~ 839 (1112)
+|||++++-||||.+++.|++.++|.|++.+.|+.||+||-.+...++.++ .|-|..++..-...+...+..
T Consensus 587 iIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~pN~E 660 (1034)
T KOG4150|consen 587 IIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGSPNEE 660 (1034)
T ss_pred EEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCCCcce
Confidence 999999999999999999999999999999999999999988877665544 455666665555555444333
|
|
| >KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-15 Score=179.91 Aligned_cols=162 Identities=19% Similarity=0.244 Sum_probs=118.1
Q ss_pred CChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhh-hc
Q 001261 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK-VM 567 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~-~~ 567 (1112)
.|-.+|...+..+-.+..++|+|||.+|||.+-...|=.++.. .....+|+++||.+|++|+...+...+. ..
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLRe------sD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t 584 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRE------SDSDVVIYVAPTKALVNQVSANVYARFDTKT 584 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhh------cCCCEEEEecchHHHhhhhhHHHHHhhccCc
Confidence 5778999999999999999999999999998655544444443 2356789999999999999888877552 22
Q ss_pred CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCC
Q 001261 568 GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 647 (1112)
Q Consensus 568 ~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~ 647 (1112)
-.+.+.+.|.....-++..+ .|+|+|+-|+-|..+|..-........++.+||+||+|.+.++.-.-.+..++..++
T Consensus 585 ~~rg~sl~g~ltqEYsinp~--nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li~- 661 (1330)
T KOG0949|consen 585 FLRGVSLLGDLTQEYSINPW--NCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLIP- 661 (1330)
T ss_pred cccchhhHhhhhHHhcCCch--hceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhcC-
Confidence 23334444444444443322 499999999999888866333334578899999999999987664555556655553
Q ss_pred CCcEEEEeccccH
Q 001261 648 DRQTVLFSATFPR 660 (1112)
Q Consensus 648 ~~q~il~SAT~~~ 660 (1112)
+.+|++|||+.+
T Consensus 662 -CP~L~LSATigN 673 (1330)
T KOG0949|consen 662 -CPFLVLSATIGN 673 (1330)
T ss_pred -CCeeEEecccCC
Confidence 469999999743
|
|
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-16 Score=154.26 Aligned_cols=120 Identities=42% Similarity=0.674 Sum_probs=111.6
Q ss_pred chhHHHHHHHHHhhh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccc
Q 001261 698 SDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAAR 776 (1112)
Q Consensus 698 ~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~ 776 (1112)
..+...+..++.... ..+++||||++...++.++..|...++.+..+||+++..+|..++..|.+|...|||+|.++++
T Consensus 11 ~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~ 90 (131)
T cd00079 11 DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIAR 90 (131)
T ss_pred HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhc
Confidence 367888888887654 4679999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEE
Q 001261 777 GLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITF 817 (1112)
Q Consensus 777 GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~ 817 (1112)
|+|+|++++||++++|++...|+|++||++|.|+.|.+++|
T Consensus 91 G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 91 GIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 99999999999999999999999999999999999988764
|
|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.8e-15 Score=187.93 Aligned_cols=133 Identities=16% Similarity=0.218 Sum_probs=94.4
Q ss_pred HHHHHHHHhhh--cCCeEEEEeCCHHHHHHHHHHHHhcCC--CeeeecCCCCHHHHHHHHHHhhcCCccEEEecCccccc
Q 001261 702 LRLLELLGEWY--EKGKILIFVHSQEKCDALFRDLLKHGY--PCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARG 777 (1112)
Q Consensus 702 ~~ll~~l~~~~--~~~~vLIF~~s~~~~~~l~~~L~~~g~--~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~G 777 (1112)
..+...|.... .+|++|||++|......++..|..... .+..+.-+++...|..+++.|+.+...||++|..+..|
T Consensus 738 ~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEG 817 (928)
T PRK08074 738 EEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEG 817 (928)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCc
Confidence 44555554433 467999999999999999999975422 12223334444567889999999989999999999999
Q ss_pred CCCCC--ccEEEEeCCCCC-H-----------------------------hHHHHHhcccCCCCCccEEEEEecCC--cc
Q 001261 778 LDVKE--LELVINFDAPNH-Y-----------------------------EDYVHRVGRTGRAGRKGCAITFISEE--DA 823 (1112)
Q Consensus 778 lDi~~--v~~VI~~d~p~s-~-----------------------------~~y~QriGR~gR~G~~g~~i~~~~~~--d~ 823 (1112)
||+|+ +.+||+..+|.. + ..+.|.+||+-|....--++++++.. ..
T Consensus 818 VD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k 897 (928)
T PRK08074 818 IDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTT 897 (928)
T ss_pred cccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccc
Confidence 99998 588988776641 1 12258899999987554455566553 45
Q ss_pred CchHHHHHHHh
Q 001261 824 KYSPDLVKALE 834 (1112)
Q Consensus 824 ~~~~~i~~~l~ 834 (1112)
.+-..+.+.|.
T Consensus 898 ~Yg~~~l~sLP 908 (928)
T PRK08074 898 SYGKYFLESLP 908 (928)
T ss_pred hHHHHHHHhCC
Confidence 56667777664
|
|
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-14 Score=173.20 Aligned_cols=279 Identities=18% Similarity=0.194 Sum_probs=178.9
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+|. .|+++|..+--++. ..-|..+.||-|||+++.+|++...+. |..|-||+++.-||..-+.++..+.
T Consensus 82 lG~-r~ydVQliGgl~Lh--~G~IAEM~TGEGKTL~atlpaylnAL~--------GkgVhVVTvNdYLA~RDae~m~~vy 150 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVLH--EGQIAEMKTGEGKTLVATLPSYLNALT--------GKGVHVVTVNDYLARRDAEWMGQVH 150 (939)
T ss_pred hCC-CcchhHHHhhhhhc--CCceeeecCCCChhHHHHHHHHHHhhc--------CCCeEEEeCCHHHHHhHHHHHHHHH
Confidence 443 57777776655554 446889999999999999999866443 6678899999999999999999999
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHH-----HHHHHhcCCcccccCCceEEEeccchhhh-ccC-----
Q 001261 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM-----IDILCTSGGKITNLRRVTYLVMDEADRMF-DMG----- 633 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L-----~~~l~~~~~~~~~l~~i~~vViDEah~~~-~~g----- 633 (1112)
..+|+.|.++.++....+.... -.|+|++||+..| .+.+..... ......+.|+||||+|.|+ |..
T Consensus 151 ~~LGLtvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDYLRDnm~~~~~-~~vqR~~~faIVDEvDSILIDEArTPLI 227 (939)
T PRK12902 151 RFLGLSVGLIQQDMSPEERKKN--YACDITYATNSELGFDYLRDNMATDIS-EVVQRPFNYCVIDEVDSILIDEARTPLI 227 (939)
T ss_pred HHhCCeEEEECCCCChHHHHHh--cCCCeEEecCCcccccchhhhhccccc-ccccCccceEEEecccceeeccCCCccc
Confidence 9999999999887766554333 3599999999887 444433211 1235678899999999753 211
Q ss_pred ----------ChhHHHHHHHhcCC--------------CCcEE-------------------------------------
Q 001261 634 ----------FEPQITRIVQNIRP--------------DRQTV------------------------------------- 652 (1112)
Q Consensus 634 ----------f~~~i~~il~~~~~--------------~~q~i------------------------------------- 652 (1112)
+......+...+.. ..+.|
T Consensus 228 ISg~~~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~ 307 (939)
T PRK12902 228 ISGQVERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAK 307 (939)
T ss_pred ccCCCccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHH
Confidence 11111122222211 11222
Q ss_pred -----------------------------------------------------------------------EEeccccHH
Q 001261 653 -----------------------------------------------------------------------LFSATFPRQ 661 (1112)
Q Consensus 653 -----------------------------------------------------------------------l~SAT~~~~ 661 (1112)
+||+|.-..
T Consensus 308 ~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te 387 (939)
T PRK12902 308 ELFIKDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTE 387 (939)
T ss_pred HHHhcCCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHH
Confidence 222222111
Q ss_pred HHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhc-CCeEEEEeCCHHHHHHHHHHHHhcCCC
Q 001261 662 VEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYP 740 (1112)
Q Consensus 662 ~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~g~~ 740 (1112)
... ...+++-++...+...+........ ..+.....|+..++..+..... +.+|||-|.|++..+.|+..|...|++
T Consensus 388 ~~E-f~~iY~l~Vv~IPTnkP~~R~d~~d-~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~ 465 (939)
T PRK12902 388 EVE-FEKTYKLEVTVIPTNRPRRRQDWPD-QVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIP 465 (939)
T ss_pred HHH-HHHHhCCcEEEcCCCCCeeeecCCC-eEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCc
Confidence 111 1112222222221111111111111 1233446788888887777654 459999999999999999999999999
Q ss_pred eeeecCCC-CHHHHHHHHHHhhcCC-ccEEEecCcccccCCCC
Q 001261 741 CLSLHGAK-DQTDRESTISDFKSNV-CNLLIATSVAARGLDVK 781 (1112)
Q Consensus 741 ~~~ihg~~-~~~~R~~~~~~F~~g~-~~VLVaT~v~~~GlDi~ 781 (1112)
+.+++..- ....-..++.. .|. -.|-|||++|+||.||.
T Consensus 466 h~vLNAk~~~~~~EA~IIa~--AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 466 HNLLNAKPENVEREAEIVAQ--AGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred hheeeCCCcchHhHHHHHHh--cCCCCcEEEeccCCCCCcCEe
Confidence 99999863 32333334432 454 46999999999999974
|
|
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.3e-14 Score=170.99 Aligned_cols=107 Identities=20% Similarity=0.172 Sum_probs=77.6
Q ss_pred cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhc----CCccEEEecCcccccCCC--------
Q 001261 713 EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKS----NVCNLLIATSVAARGLDV-------- 780 (1112)
Q Consensus 713 ~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~----g~~~VLVaT~v~~~GlDi-------- 780 (1112)
..|.+||.+.|...+..++..|...--..+.+.|..+ .+..+++.|+. |...||++|+.+..||||
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 4689999999999999999999654223345666543 34567888886 478999999999999999
Q ss_pred CC--ccEEEEeCCCCC-------------------------HhHHHHHhcccCCCCCc--cEEEEEecCC
Q 001261 781 KE--LELVINFDAPNH-------------------------YEDYVHRVGRTGRAGRK--GCAITFISEE 821 (1112)
Q Consensus 781 ~~--v~~VI~~d~p~s-------------------------~~~y~QriGR~gR~G~~--g~~i~~~~~~ 821 (1112)
|+ +++||+..+|.. ...+.|-+||.-|.... --+++++++.
T Consensus 547 ~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 547 KDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred CCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 34 999999777631 12335888999997654 2344444443
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-15 Score=171.35 Aligned_cols=265 Identities=22% Similarity=0.269 Sum_probs=179.1
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI 584 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~ 584 (1112)
+-++-+|||.||||.-++ +++.. ...+++..|.|-||..+++.+.. .|+.|-+++|.......-
T Consensus 192 kIi~H~GPTNSGKTy~AL----qrl~~--------aksGvycGPLrLLA~EV~~r~na----~gipCdL~TGeE~~~~~~ 255 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYRAL----QRLKS--------AKSGVYCGPLRLLAHEVYDRLNA----LGIPCDLLTGEERRFVLD 255 (700)
T ss_pred eEEEEeCCCCCchhHHHH----HHHhh--------hccceecchHHHHHHHHHHHhhh----cCCCccccccceeeecCC
Confidence 446668999999997654 33332 34568999999999999888776 478887777755333221
Q ss_pred HHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCCC-CcEEEEeccccHHHH
Q 001261 585 SELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD-RQTVLFSATFPRQVE 663 (1112)
Q Consensus 585 ~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~-~q~il~SAT~~~~~~ 663 (1112)
. ...+..+-||.+++ .--..+.+.||||++.|-|...+..+.+.+--+..+ .++.+= +.+.
T Consensus 256 ~--~~~a~hvScTVEM~-----------sv~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGe-----psvl 317 (700)
T KOG0953|consen 256 N--GNPAQHVSCTVEMV-----------SVNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCGE-----PSVL 317 (700)
T ss_pred C--CCcccceEEEEEEe-----------ecCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccCC-----chHH
Confidence 1 12257788887754 112357899999999999887777777655433221 222211 1233
Q ss_pred HHHHHhcC---CCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCC
Q 001261 664 ILARKVLN---KPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYP 740 (1112)
Q Consensus 664 ~l~~~~~~---~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~ 740 (1112)
.+.+.++. +.+.+.. +.-..+-.-...++.-|... ..|.+|| |-++..+-.+...+.+.|..
T Consensus 318 dlV~~i~k~TGd~vev~~-------------YeRl~pL~v~~~~~~sl~nl-k~GDCvV-~FSkk~I~~~k~kIE~~g~~ 382 (700)
T KOG0953|consen 318 DLVRKILKMTGDDVEVRE-------------YERLSPLVVEETALGSLSNL-KPGDCVV-AFSKKDIFTVKKKIEKAGNH 382 (700)
T ss_pred HHHHHHHhhcCCeeEEEe-------------ecccCcceehhhhhhhhccC-CCCCeEE-EeehhhHHHHHHHHHHhcCc
Confidence 34444432 2222221 11111111112344445443 3455544 55788888888999888766
Q ss_pred -eeeecCCCCHHHHHHHHHHhhc--CCccEEEecCcccccCCCCCccEEEEeCCC---------CCHhHHHHHhcccCCC
Q 001261 741 -CLSLHGAKDQTDRESTISDFKS--NVCNLLIATSVAARGLDVKELELVINFDAP---------NHYEDYVHRVGRTGRA 808 (1112)
Q Consensus 741 -~~~ihg~~~~~~R~~~~~~F~~--g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p---------~s~~~y~QriGR~gR~ 808 (1112)
|++|+|++|++.|..--..|.+ +.++||||||++++|||+ +|+.||+|++- .+..+..|..|||||.
T Consensus 383 k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf 461 (700)
T KOG0953|consen 383 KCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRF 461 (700)
T ss_pred ceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhccccc
Confidence 9999999999999999999986 899999999999999999 89999998874 3577889999999998
Q ss_pred CC---ccEEEEEec
Q 001261 809 GR---KGCAITFIS 819 (1112)
Q Consensus 809 G~---~g~~i~~~~ 819 (1112)
|. .|.+.+|..
T Consensus 462 ~s~~~~G~vTtl~~ 475 (700)
T KOG0953|consen 462 GSKYPQGEVTTLHS 475 (700)
T ss_pred ccCCcCceEEEeeH
Confidence 74 476666664
|
|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.8e-16 Score=180.60 Aligned_cols=335 Identities=19% Similarity=0.264 Sum_probs=193.5
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC----CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcE
Q 001261 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG----RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVG 543 (1112)
Q Consensus 468 ~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g----~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~ 543 (1112)
.|..+.. ..+...|.-..-.+|+|+|++||...+.| ...=+++.+|+|||+..|-. .+.+. ..++
T Consensus 141 DW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLki-sEala---------~~~i 209 (1518)
T COG4889 141 DWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKI-SEALA---------AARI 209 (1518)
T ss_pred ChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHH-HHHHh---------hhhe
Confidence 4554433 33334444445568999999999999865 23456788999999876543 33332 2578
Q ss_pred EEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCCh-------------------HHHH-HHH-----hcCCeEEEeCc
Q 001261 544 LIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGV-------------------AQQI-SEL-----KRGTEIVVCTP 598 (1112)
Q Consensus 544 LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~-------------------~~~~-~~l-----~~~~~IvV~Tp 598 (1112)
|+|||+..|..|...++..-. .+.++...+++.... ...+ ..+ ..+--||++|+
T Consensus 210 L~LvPSIsLLsQTlrew~~~~-~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTY 288 (1518)
T COG4889 210 LFLVPSISLLSQTLREWTAQK-ELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTY 288 (1518)
T ss_pred EeecchHHHHHHHHHHHhhcc-CccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcc
Confidence 999999999999888776532 345555544443211 1111 111 12457999999
Q ss_pred hHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCC-----CCcEEEEeccccHH---H--------
Q 001261 599 GRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP-----DRQTVLFSATFPRQ---V-------- 662 (1112)
Q Consensus 599 ~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~-----~~q~il~SAT~~~~---~-------- 662 (1112)
..|..+-.... .-+..+++||+|||||.........-..-+..+.. ....+.|+||+--- .
T Consensus 289 QSl~~i~eAQe---~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s 365 (1518)
T COG4889 289 QSLPRIKEAQE---AGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHS 365 (1518)
T ss_pred cchHHHHHHHH---cCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhcc
Confidence 99877665433 35778899999999985321111111111111111 12346788885211 0
Q ss_pred ----------------------HHHHHHhcCCCeEEEEcC-cccccCCccEEEEeccc-------chhHHHHHHHHHhhh
Q 001261 663 ----------------------EILARKVLNKPVEIQVGG-RSVVNKDITQLVEVRPE-------SDRFLRLLELLGEWY 712 (1112)
Q Consensus 663 ----------------------~~l~~~~~~~p~~i~i~~-~~~~~~~i~q~~~~~~~-------~~k~~~ll~~l~~~~ 712 (1112)
+...+.++.+.-.+.+.- ..+....+. .....+. ..++.-...-|....
T Consensus 366 ~~l~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~-~~~~~~~~~L~~dd~~kIvG~wnGlakr~ 444 (1518)
T COG4889 366 AELSSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQ-SVLSGPSKGLALDDVSKIVGCWNGLAKRN 444 (1518)
T ss_pred ceeeccchhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhh-hhccCcccccchhhhhhhhhhhhhhhhhc
Confidence 111222233321111110 111111111 1111111 111111111111110
Q ss_pred --------------cCCeEEEEeCCHHHHHHHHHHHHh-------------cC--CCeeeecCCCCHHHHHHHHH---Hh
Q 001261 713 --------------EKGKILIFVHSQEKCDALFRDLLK-------------HG--YPCLSLHGAKDQTDRESTIS---DF 760 (1112)
Q Consensus 713 --------------~~~~vLIF~~s~~~~~~l~~~L~~-------------~g--~~~~~ihg~~~~~~R~~~~~---~F 760 (1112)
+..+.|-||.++++...++..+.. .+ +.|-.+.|.|...+|...+. .|
T Consensus 445 g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~ 524 (1518)
T COG4889 445 GEDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTF 524 (1518)
T ss_pred cccccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCC
Confidence 012578899888777666555432 13 34556678999999865544 34
Q ss_pred hcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCC--CC-ccEEEEEe
Q 001261 761 KSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRA--GR-KGCAITFI 818 (1112)
Q Consensus 761 ~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~--G~-~g~~i~~~ 818 (1112)
....++||---..++.|+|||.++.||+|++-+++.+.+|.+||+.|- |+ -|+.|+-+
T Consensus 525 ~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPI 585 (1518)
T COG4889 525 EPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPI 585 (1518)
T ss_pred CcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEe
Confidence 567789998889999999999999999999999999999999999994 32 25555533
|
|
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-15 Score=135.38 Aligned_cols=78 Identities=35% Similarity=0.623 Sum_probs=75.5
Q ss_pred HHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCC
Q 001261 732 RDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAG 809 (1112)
Q Consensus 732 ~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G 809 (1112)
++|...++.+..+||+++..+|..+++.|.+|...|||||+++++|||+|.+++||+|++|+++..|.|++||+||.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 367888999999999999999999999999999999999999999999999999999999999999999999999986
|
It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B .... |
| >KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.60 E-value=5e-15 Score=176.17 Aligned_cols=315 Identities=21% Similarity=0.246 Sum_probs=200.1
Q ss_pred CChHHHHHHHHHHHc---C-CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 489 KPMPIQAQALPVIMS---G-RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~---g-~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
++.+||...+.++.+ + -+.|+..+||.|||++.+..+ .+++... ...||. |||||+-.|.+ |..+|..|+
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLi-tYLmE~K---~~~GP~-LvivPlstL~N-W~~Ef~kWa 467 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLI-TYLMEHK---QMQGPF-LIIVPLSTLVN-WSSEFPKWA 467 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHH-HHHHHHc---ccCCCe-EEeccccccCC-chhhccccc
Confidence 667899999988763 2 367888999999998754433 3444321 234676 88999999965 667777775
Q ss_pred hhcCceEEEEeCCCChHHH---HHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHH
Q 001261 565 KVMGVRCVPVYGGSGVAQQ---ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRI 641 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~---~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~i 641 (1112)
.. +. ..+|-|+..... -.......+|+++|+..++.-- .+..--++.|+||||.|+|.+. ...+...
T Consensus 468 PS--v~-~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiikdk-----~lLsKI~W~yMIIDEGHRmKNa--~~KLt~~ 537 (1157)
T KOG0386|consen 468 PS--VQ-KIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIKDK-----ALLSKISWKYMIIDEGHRMKNA--ICKLTDT 537 (1157)
T ss_pred cc--ee-eeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcCCH-----HHHhccCCcceeecccccccch--hhHHHHH
Confidence 43 22 234445432111 1112245799999999775411 1112224679999999998542 1222222
Q ss_pred HHhcCCCCcEEEEecccc--------------------------------------------------------------
Q 001261 642 VQNIRPDRQTVLFSATFP-------------------------------------------------------------- 659 (1112)
Q Consensus 642 l~~~~~~~q~il~SAT~~-------------------------------------------------------------- 659 (1112)
+........-+++|+|+-
T Consensus 538 L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFl 617 (1157)
T KOG0386|consen 538 LNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFL 617 (1157)
T ss_pred hhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHH
Confidence 221111222233333321
Q ss_pred -------------HHHHH------------------------------------------HHHHhcCCCeEEE-EcCccc
Q 001261 660 -------------RQVEI------------------------------------------LARKVLNKPVEIQ-VGGRSV 683 (1112)
Q Consensus 660 -------------~~~~~------------------------------------------l~~~~~~~p~~i~-i~~~~~ 683 (1112)
..++. ..+++|+.|..+. +..
T Consensus 618 LRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~--- 694 (1157)
T KOG0386|consen 618 LRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVEN--- 694 (1157)
T ss_pred HHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhcc---
Confidence 00000 1111112221100 000
Q ss_pred ccCCccEEE---EecccchhHHHHHHHHHhhh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHH
Q 001261 684 VNKDITQLV---EVRPESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISD 759 (1112)
Q Consensus 684 ~~~~i~q~~---~~~~~~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~ 759 (1112)
.+...+ .+.-...|+..|-.+|-++. .+++||+||......+.+..+|.-.++....+.|.....+|-..+..
T Consensus 695 ---~~~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~ 771 (1157)
T KOG0386|consen 695 ---SYTLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEI 771 (1157)
T ss_pred ---ccccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHH
Confidence 000000 11112345544444444433 35699999999999999999999999999999999999999999999
Q ss_pred hhcCC---ccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCc
Q 001261 760 FKSNV---CNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKY 825 (1112)
Q Consensus 760 F~~g~---~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~ 825 (1112)
|..-. +.+|++|...+.|||+..+++||+||..|++....|+--|+.|.|+...+.+|....-..+
T Consensus 772 FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sv 840 (1157)
T KOG0386|consen 772 FNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSV 840 (1157)
T ss_pred hcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHH
Confidence 98543 5678899999999999999999999999999999999999999999888777765443333
|
|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.2e-14 Score=140.89 Aligned_cols=144 Identities=38% Similarity=0.568 Sum_probs=111.7
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI 584 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~ 584 (1112)
+.+++.++||+|||++++..+...+.. +..+.+||++|+..|+.|+...+..+... ++.+..+.++.......
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 73 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS------LKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQE 73 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc------ccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHH
Confidence 368999999999999998888877554 23568999999999999999998887765 67777777777666665
Q ss_pred HHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccc
Q 001261 585 SELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 585 ~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
.......+|+|+|++.+...+.... .....+.+|||||+|.+....+...............+++++|||+
T Consensus 74 ~~~~~~~~i~i~t~~~~~~~~~~~~---~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 74 KLLSGKTDIVVGTPGRLLDELERLK---LSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHhcCCCCEEEECcHHHHHHHHcCC---cchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 5556778999999999987775432 2345688999999999877655444333444556778899999996
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-13 Score=155.65 Aligned_cols=122 Identities=20% Similarity=0.359 Sum_probs=104.4
Q ss_pred hhHHHHHHHHHhhhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCC-ccEEEecCcccc
Q 001261 699 DRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNV-CNLLIATSVAAR 776 (1112)
Q Consensus 699 ~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~-~~VLVaT~v~~~ 776 (1112)
.|+..|-.+|..... +.++|+|+.....++.+..+|...+|..+.+.|.....+|..++.+|+... +-+|++|.+.+-
T Consensus 1028 gKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGL 1107 (1185)
T KOG0388|consen 1028 GKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGL 1107 (1185)
T ss_pred cceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcc
Confidence 344455555555443 459999999999999999999999999999999999999999999999765 456889999999
Q ss_pred cCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccE--EEEEecC
Q 001261 777 GLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGC--AITFISE 820 (1112)
Q Consensus 777 GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~--~i~~~~~ 820 (1112)
|||+..+++||+|+..|++..-.|.+.|+.|-|+.-. +|.|++.
T Consensus 1108 GINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~r 1153 (1185)
T KOG0388|consen 1108 GINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITR 1153 (1185)
T ss_pred cccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeeccc
Confidence 9999999999999999999999999999999998654 5556654
|
|
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.8e-13 Score=158.40 Aligned_cols=108 Identities=21% Similarity=0.337 Sum_probs=93.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCC--ccEEEecCcccccCCCCCccEEEEeCC
Q 001261 714 KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNV--CNLLIATSVAARGLDVKELELVINFDA 791 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~--~~VLVaT~v~~~GlDi~~v~~VI~~d~ 791 (1112)
+.++|||+......+.|..+|..+||-.+.|.|....++|...++.|.... +++|++|-..+.|||+.++++||+||.
T Consensus 1276 ghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDs 1355 (1958)
T KOG0391|consen 1276 GHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYDS 1355 (1958)
T ss_pred CceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEecC
Confidence 358999999999999999999999999999999999999999999999664 577899999999999999999999999
Q ss_pred CCCHhHHHHHhcccCCCCCcc--EEEEEecCC
Q 001261 792 PNHYEDYVHRVGRTGRAGRKG--CAITFISEE 821 (1112)
Q Consensus 792 p~s~~~y~QriGR~gR~G~~g--~~i~~~~~~ 821 (1112)
.|++.---|.--|+.|.|+.- ..|.|++..
T Consensus 1356 DwNPtMDaQAQDrChRIGqtRDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1356 DWNPTMDAQAQDRCHRIGQTRDVHIYRLISER 1387 (1958)
T ss_pred CCCchhhhHHHHHHHhhcCccceEEEEeeccc
Confidence 999876666666666666544 455666654
|
|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.5e-12 Score=158.76 Aligned_cols=127 Identities=22% Similarity=0.308 Sum_probs=86.1
Q ss_pred HHHHHHHhhh-cCCeEEEEeCCHHHHHHHHHHHHhc-CCCeeeecCCCCHHHHHHHHHHhh----cCCccEEEecCcccc
Q 001261 703 RLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKH-GYPCLSLHGAKDQTDRESTISDFK----SNVCNLLIATSVAAR 776 (1112)
Q Consensus 703 ~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~-g~~~~~ihg~~~~~~R~~~~~~F~----~g~~~VLVaT~v~~~ 776 (1112)
.+...|.... ..+.+|||++|....+.++..|... ++. +.++|.. .+..++..|+ .|...||++|..+..
T Consensus 522 ~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~E 597 (697)
T PRK11747 522 EMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAE 597 (697)
T ss_pred HHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccc
Confidence 4444443322 3456999999999999999998743 333 4556643 4667786666 477889999999999
Q ss_pred cCCCCC--ccEEEEeCCCC----CHh--------------------------HHHHHhcccCCCCCccEEEEEecCC--c
Q 001261 777 GLDVKE--LELVINFDAPN----HYE--------------------------DYVHRVGRTGRAGRKGCAITFISEE--D 822 (1112)
Q Consensus 777 GlDi~~--v~~VI~~d~p~----s~~--------------------------~y~QriGR~gR~G~~g~~i~~~~~~--d 822 (1112)
|||+|+ +.+||+..+|. ++. .+.|.+||.-|....--+++++++. .
T Consensus 598 GVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R~~~ 677 (697)
T PRK11747 598 GLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRRLLT 677 (697)
T ss_pred cccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEcccccc
Confidence 999998 88999977764 211 2248899999986543345555543 3
Q ss_pred cCchHHHHHHH
Q 001261 823 AKYSPDLVKAL 833 (1112)
Q Consensus 823 ~~~~~~i~~~l 833 (1112)
..+-..+++.|
T Consensus 678 ~~Yg~~~l~sL 688 (697)
T PRK11747 678 KRYGKRLLDAL 688 (697)
T ss_pred hhHHHHHHHhC
Confidence 33444555554
|
|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=99.52 E-value=3e-12 Score=160.68 Aligned_cols=74 Identities=23% Similarity=0.364 Sum_probs=61.9
Q ss_pred CCCCCChHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHH
Q 001261 485 LNYEKPMPIQAQALPVIM----SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDI 560 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il----~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~ 560 (1112)
+.|..++|.|.+.+..+. .+..+|+.+|||+|||++.|.|+|..+...+ ..+++++++.|..-..|+.+++
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~-----~~~kIiy~sRThsQl~q~i~El 80 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP-----EVRKIIYASRTHSQLEQATEEL 80 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc-----ccccEEEEcccchHHHHHHHHH
Confidence 567778999998877655 6889999999999999999999998766432 3468899999998889999998
Q ss_pred HHH
Q 001261 561 RKF 563 (1112)
Q Consensus 561 ~~~ 563 (1112)
++.
T Consensus 81 k~~ 83 (705)
T TIGR00604 81 RKL 83 (705)
T ss_pred Hhh
Confidence 885
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.7e-14 Score=146.11 Aligned_cols=156 Identities=19% Similarity=0.171 Sum_probs=102.9
Q ss_pred CChHHHHHHHHHHHc-------CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHH
Q 001261 489 KPMPIQAQALPVIMS-------GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIR 561 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~-------g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~ 561 (1112)
+|+++|.+++..+.. .+.+++.++||||||.+++..+..... .+||+||+..|+.|+...+.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~-----------~~l~~~p~~~l~~Q~~~~~~ 71 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR-----------KVLIVAPNISLLEQWYDEFD 71 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC-----------EEEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc-----------ceeEecCHHHHHHHHHHHHH
Confidence 578999999999884 688999999999999988866665532 68999999999999999997
Q ss_pred HHhhhcCceEEE-----------EeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCC--------cccccCCceEEE
Q 001261 562 KFAKVMGVRCVP-----------VYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGG--------KITNLRRVTYLV 622 (1112)
Q Consensus 562 ~~~~~~~i~~~~-----------~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~--------~~~~l~~i~~vV 622 (1112)
.+.......... ...................|+++|...|......... .......+.+||
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI 151 (184)
T PF04851_consen 72 DFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVI 151 (184)
T ss_dssp HHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEE
T ss_pred HhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEE
Confidence 665432111111 0111111111222234578999999999877654211 112345678999
Q ss_pred eccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccH
Q 001261 623 MDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPR 660 (1112)
Q Consensus 623 iDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~ 660 (1112)
+||||++.... .+..++. .+...+|+||||+++
T Consensus 152 ~DEaH~~~~~~---~~~~i~~--~~~~~~l~lTATp~r 184 (184)
T PF04851_consen 152 IDEAHHYPSDS---SYREIIE--FKAAFILGLTATPFR 184 (184)
T ss_dssp EETGGCTHHHH---HHHHHHH--SSCCEEEEEESS-S-
T ss_pred EehhhhcCCHH---HHHHHHc--CCCCeEEEEEeCccC
Confidence 99999876432 1445555 456679999999863
|
1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B .... |
| >KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.5e-13 Score=154.20 Aligned_cols=119 Identities=19% Similarity=0.221 Sum_probs=97.0
Q ss_pred chhHHHHHHHHHhhh--cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhh--cCCcc-EEEecC
Q 001261 698 SDRFLRLLELLGEWY--EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFK--SNVCN-LLIATS 772 (1112)
Q Consensus 698 ~~k~~~ll~~l~~~~--~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~--~g~~~-VLVaT~ 772 (1112)
.-|+..++..+...+ ...+++|...-......+...|...|+....+||.....+|..+++.|. +|... .||+-.
T Consensus 728 S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLt 807 (901)
T KOG4439|consen 728 SCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLT 807 (901)
T ss_pred hhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEc
Confidence 335555555555442 3457777777777778888999999999999999999999999999997 44344 456667
Q ss_pred cccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEE
Q 001261 773 VAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAIT 816 (1112)
Q Consensus 773 v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~ 816 (1112)
..+.|||+-+.+++|.+|+-|++.---|.+.|+.|.|++..+++
T Consensus 808 AGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~I 851 (901)
T KOG4439|consen 808 AGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFI 851 (901)
T ss_pred cCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEE
Confidence 88899999999999999999999999999999999998876655
|
|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-12 Score=158.88 Aligned_cols=270 Identities=12% Similarity=0.148 Sum_probs=166.8
Q ss_pred CCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHH---Hh
Q 001261 512 KTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISE---LK 588 (1112)
Q Consensus 512 ~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~---l~ 588 (1112)
-+|||||.+|+-.+-..+.. |.++|||+|...|+.|+...|+..+. +..++.++++.+..+.... +.
T Consensus 168 ~~GSGKTevyl~~i~~~l~~--------Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~~~ 237 (665)
T PRK14873 168 LPGEDWARRLAAAAAATLRA--------GRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLAVL 237 (665)
T ss_pred CCCCcHHHHHHHHHHHHHHc--------CCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHHHh
Confidence 36999999998877666543 67899999999999999998887653 2567788888877655433 33
Q ss_pred cC-CeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhh-ccC--ChhHHHH--HHHhcCCCCcEEEEeccccHHH
Q 001261 589 RG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF-DMG--FEPQITR--IVQNIRPDRQTVLFSATFPRQV 662 (1112)
Q Consensus 589 ~~-~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~-~~g--f~~~i~~--il~~~~~~~q~il~SAT~~~~~ 662 (1112)
.| ..|||||-..+ +..+.++++|||||-|.-. ..+ ...+... ++.....+..+|+.|||++-..
T Consensus 238 ~G~~~IViGtRSAv----------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles 307 (665)
T PRK14873 238 RGQARVVVGTRSAV----------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEA 307 (665)
T ss_pred CCCCcEEEEcceeE----------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHH
Confidence 34 68999996643 3578899999999999432 111 2223332 2334446778999999997655
Q ss_pred HHHHHHhcCCCeEEEEcCcccccCCccEEEEeccc-c--------h----hHHHHHHHHHhhhcCCeEEEEeCCHHHHHH
Q 001261 663 EILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPE-S--------D----RFLRLLELLGEWYEKGKILIFVHSQEKCDA 729 (1112)
Q Consensus 663 ~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~-~--------~----k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~ 729 (1112)
...+....-.. +..... ......-. +.+.+. . . --..++..|.+....|++|||+|.+..+-.
T Consensus 308 ~~~~~~g~~~~--~~~~~~-~~~~~~P~-v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~gqvll~lnRrGyap~ 383 (665)
T PRK14873 308 QALVESGWAHD--LVAPRP-VVRARAPR-VRALGDSGLALERDPAARAARLPSLAFRAARDALEHGPVLVQVPRRGYVPS 383 (665)
T ss_pred HHHHhcCccee--eccccc-cccCCCCe-EEEEeCchhhhccccccccCccCHHHHHHHHHHHhcCcEEEEecCCCCCCe
Confidence 44433221111 111110 00111111 111110 0 0 113466677666666799999997655422
Q ss_pred -----------------------------------------------------------HHHHHHhc--CCCeeeecCCC
Q 001261 730 -----------------------------------------------------------LFRDLLKH--GYPCLSLHGAK 748 (1112)
Q Consensus 730 -----------------------------------------------------------l~~~L~~~--g~~~~~ihg~~ 748 (1112)
+.+.|... +.++..+
T Consensus 384 l~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~---- 459 (665)
T PRK14873 384 LACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTS---- 459 (665)
T ss_pred eEhhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEE----
Confidence 22222221 1222222
Q ss_pred CHHHHHHHHHHhhcCCccEEEecC----cccccCCCCCccEEEEeCCC------C------CHhHHHHHhcccCCCCCcc
Q 001261 749 DQTDRESTISDFKSNVCNLLIATS----VAARGLDVKELELVINFDAP------N------HYEDYVHRVGRTGRAGRKG 812 (1112)
Q Consensus 749 ~~~~R~~~~~~F~~g~~~VLVaT~----v~~~GlDi~~v~~VI~~d~p------~------s~~~y~QriGR~gR~G~~g 812 (1112)
+++.++..|. ++.+|||+|. +++ +++.+|+..|.. . .+..+.|-+||+||.+..|
T Consensus 460 ---d~d~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G 530 (665)
T PRK14873 460 ---GGDQVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGG 530 (665)
T ss_pred ---ChHHHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCC
Confidence 2235778886 5899999998 665 367777766543 2 2445578889999999899
Q ss_pred EEEEEe
Q 001261 813 CAITFI 818 (1112)
Q Consensus 813 ~~i~~~ 818 (1112)
.+++..
T Consensus 531 ~V~iq~ 536 (665)
T PRK14873 531 QVVVVA 536 (665)
T ss_pred EEEEEe
Confidence 988764
|
|
| >TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-12 Score=160.69 Aligned_cols=313 Identities=23% Similarity=0.242 Sum_probs=180.3
Q ss_pred CCChHHHHHHHHHHHc--------CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHH
Q 001261 488 EKPMPIQAQALPVIMS--------GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSD 559 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~--------g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~ 559 (1112)
..-+.+|-.|+..+.. |--+|-.|.||||||++=.-.|+ .|.. ...|++..|..-.|.|..|.-..
T Consensus 407 ~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImy-aLsd-----~~~g~RfsiALGLRTLTLQTGda 480 (1110)
T TIGR02562 407 HPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMY-ALRD-----DKQGARFAIALGLRSLTLQTGHA 480 (1110)
T ss_pred CCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHH-HhCC-----CCCCceEEEEccccceeccchHH
Confidence 3457899999988774 22255569999999987554443 3322 23466777777888888888777
Q ss_pred HHHHhhhcCceEEEEeCCCChHHHHH-------------------------------------------HHhc-------
Q 001261 560 IRKFAKVMGVRCVPVYGGSGVAQQIS-------------------------------------------ELKR------- 589 (1112)
Q Consensus 560 ~~~~~~~~~i~~~~~~gg~~~~~~~~-------------------------------------------~l~~------- 589 (1112)
++.-+.--.-.+.+++||....+... .+..
T Consensus 481 ~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rl 560 (1110)
T TIGR02562 481 LKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTL 560 (1110)
T ss_pred HHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhh
Confidence 77654333334555555533221110 0000
Q ss_pred -CCeEEEeCchHHHHHHHhcC--CcccccCC--ceEEEeccchhhhccCChhHHHHHHHhc-CCCCcEEEEeccccHHHH
Q 001261 590 -GTEIVVCTPGRMIDILCTSG--GKITNLRR--VTYLVMDEADRMFDMGFEPQITRIVQNI-RPDRQTVLFSATFPRQVE 663 (1112)
Q Consensus 590 -~~~IvV~Tp~~L~~~l~~~~--~~~~~l~~--i~~vViDEah~~~~~gf~~~i~~il~~~-~~~~q~il~SAT~~~~~~ 663 (1112)
...|+|||+..++....... .....+-. -+.|||||+|..-.. ....+..++..+ .....+|+||||+|+.+.
T Consensus 561 l~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~-~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~ 639 (1110)
T TIGR02562 561 LAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPE-DLPALLRLVQLAGLLGSRVLLSSATLPPALV 639 (1110)
T ss_pred hcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHH-HHHHHHHHHHHHHHcCCCEEEEeCCCCHHHH
Confidence 14799999999987763222 11111111 357999999963211 122233333321 235679999999998764
Q ss_pred HH-HHH----------hcCC---CeEEE---EcCccccc--------------------------CCcc---EEEEeccc
Q 001261 664 IL-ARK----------VLNK---PVEIQ---VGGRSVVN--------------------------KDIT---QLVEVRPE 697 (1112)
Q Consensus 664 ~l-~~~----------~~~~---p~~i~---i~~~~~~~--------------------------~~i~---q~~~~~~~ 697 (1112)
.. ..- ..+. |+.|. +....... ..+. .++.+...
T Consensus 640 ~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~ 719 (1110)
T TIGR02562 640 KTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSL 719 (1110)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCc
Confidence 32 222 2222 22111 11100000 0011 11111111
Q ss_pred c----hhHHH----HHHHHHhhh-------c-CCe----EEEEeCCHHHHHHHHHHHHhc------CCCeeeecCCCCHH
Q 001261 698 S----DRFLR----LLELLGEWY-------E-KGK----ILIFVHSQEKCDALFRDLLKH------GYPCLSLHGAKDQT 751 (1112)
Q Consensus 698 ~----~k~~~----ll~~l~~~~-------~-~~~----vLIF~~s~~~~~~l~~~L~~~------g~~~~~ihg~~~~~ 751 (1112)
. ..... +.+.+.... + .++ -||-++++..+..++..|... .+.+++||+..+..
T Consensus 720 ~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~ 799 (1110)
T TIGR02562 720 PRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLL 799 (1110)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHH
Confidence 1 11112 222111111 1 122 378889999999998888764 34588999999888
Q ss_pred HHHHHHHHh----------------------hc----CCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhccc
Q 001261 752 DRESTISDF----------------------KS----NVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRT 805 (1112)
Q Consensus 752 ~R~~~~~~F----------------------~~----g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~ 805 (1112)
.|..+.+.+ .+ +...|+|+|.|++.|+|++ .+++|- -|.++...+|++||+
T Consensus 800 ~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~d-fd~~~~--~~~~~~sliQ~aGR~ 876 (1110)
T TIGR02562 800 LRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDHD-YDWAIA--DPSSMRSIIQLAGRV 876 (1110)
T ss_pred HHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEeccc-CCeeee--ccCcHHHHHHHhhcc
Confidence 887766543 12 4568999999999999994 555543 456688999999999
Q ss_pred CCCCC
Q 001261 806 GRAGR 810 (1112)
Q Consensus 806 gR~G~ 810 (1112)
.|.|.
T Consensus 877 ~R~~~ 881 (1110)
T TIGR02562 877 NRHRL 881 (1110)
T ss_pred ccccc
Confidence 99874
|
The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc. |
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1e-11 Score=155.69 Aligned_cols=104 Identities=20% Similarity=0.248 Sum_probs=78.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCC-CeeeecCCCCHHHHHHHHHHhhcCCc-cEEEecCcccccCCCCC--ccEEEEe
Q 001261 714 KGKILIFVHSQEKCDALFRDLLKHGY-PCLSLHGAKDQTDRESTISDFKSNVC-NLLIATSVAARGLDVKE--LELVINF 789 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~g~-~~~~ihg~~~~~~R~~~~~~F~~g~~-~VLVaT~v~~~GlDi~~--v~~VI~~ 789 (1112)
++++|||++|...+..++..|..... -.+..+|..+. ..+++.|..+.- .|||+|..++.|||+++ +.+||+.
T Consensus 479 ~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~~---~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~ 555 (654)
T COG1199 479 PGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDER---EELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIV 555 (654)
T ss_pred CCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCcH---HHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEE
Confidence 56899999999999999999987654 24555665554 378888886655 89999999999999998 6888888
Q ss_pred CCCCC------------------------------HhHHHHHhcccCCCCCccEEEEEecC
Q 001261 790 DAPNH------------------------------YEDYVHRVGRTGRAGRKGCAITFISE 820 (1112)
Q Consensus 790 d~p~s------------------------------~~~y~QriGR~gR~G~~g~~i~~~~~ 820 (1112)
.+|.- +..+.|.+||+-|.-...-++++++.
T Consensus 556 ~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~ 616 (654)
T COG1199 556 GLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDK 616 (654)
T ss_pred ecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecc
Confidence 77652 22346999999996544334445544
|
|
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-12 Score=158.43 Aligned_cols=126 Identities=25% Similarity=0.314 Sum_probs=101.7
Q ss_pred cccchhHHHHHHHHHhhhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCC-ccEEEecC
Q 001261 695 RPESDRFLRLLELLGEWYEK-GKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNV-CNLLIATS 772 (1112)
Q Consensus 695 ~~~~~k~~~ll~~l~~~~~~-~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~-~~VLVaT~ 772 (1112)
.....|+..++..+...... .+|||-|.|++..+.|+..|...|++.-+|+......+-. |+. ..|. -.|-|||+
T Consensus 608 ~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAe-IVA--~AG~~GaVTIATN 684 (1112)
T PRK12901 608 KTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAE-IVA--EAGQPGTVTIATN 684 (1112)
T ss_pred cCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHH-HHH--hcCCCCcEEEecc
Confidence 34456888888888776654 4999999999999999999999999988888865533332 222 2343 46999999
Q ss_pred cccccCCCC--------CccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCcc
Q 001261 773 VAARGLDVK--------ELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823 (1112)
Q Consensus 773 v~~~GlDi~--------~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~ 823 (1112)
+|+||.||. +=-+||--..+.|.-.-.|-.||+||-|.+|.+..|++-+|.
T Consensus 685 MAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 685 MAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred CcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 999999998 446788788899998999999999999999999999986654
|
|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.3e-13 Score=163.23 Aligned_cols=312 Identities=18% Similarity=0.238 Sum_probs=201.9
Q ss_pred hHHHHHHHHHHHcC-CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH-HhhhcC
Q 001261 491 MPIQAQALPVIMSG-RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK-FAKVMG 568 (1112)
Q Consensus 491 t~iQ~~ai~~il~g-~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~-~~~~~~ 568 (1112)
.|+|.|.++.+... .++++.+|+|||||+++-++++. ......+++++|.-+.+.-++..|.+ |....|
T Consensus 1145 n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~---------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G 1215 (1674)
T KOG0951|consen 1145 NPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR---------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLG 1215 (1674)
T ss_pred CCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC---------CccceEEEEecchHHHHHHHHHHHHHhhccccC
Confidence 68999999998865 56788899999999999888875 12345789999999999887776654 555678
Q ss_pred ceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccC-----ChhHHHHHHH
Q 001261 569 VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG-----FEPQITRIVQ 643 (1112)
Q Consensus 569 i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~g-----f~~~i~~il~ 643 (1112)
+.++.+.|..+..- .+....+|+|+||..+-.+ . ..+.+++.|+||+|.+.+.. ..-.+..|-.
T Consensus 1216 ~~~~~l~ge~s~~l---kl~~~~~vii~tpe~~d~l-q-------~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~ 1284 (1674)
T KOG0951|consen 1216 LRIVKLTGETSLDL---KLLQKGQVIISTPEQWDLL-Q-------SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIAS 1284 (1674)
T ss_pred ceEEecCCccccch---HHhhhcceEEechhHHHHH-h-------hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHH
Confidence 88888877665543 2333479999999998433 1 45678999999999876321 1112455555
Q ss_pred hcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHH----HHHHHHh-hhcCCeEE
Q 001261 644 NIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLR----LLELLGE-WYEKGKIL 718 (1112)
Q Consensus 644 ~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~----ll~~l~~-~~~~~~vL 718 (1112)
.+-....++.+|..+.+. ..++...-...+.+.+..+..+...-.|.+........+.. .+..+.. ...+.+.+
T Consensus 1285 q~~k~ir~v~ls~~lana-~d~ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~ 1363 (1674)
T KOG0951|consen 1285 QLEKKIRVVALSSSLANA-RDLIGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAI 1363 (1674)
T ss_pred HHHhheeEEEeehhhccc-hhhccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeE
Confidence 666667788888776542 11211000111111111122111111122222222222222 2222322 23456899
Q ss_pred EEeCCHHHHHHHHHHHHhc----------------------CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccc
Q 001261 719 IFVHSQEKCDALFRDLLKH----------------------GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAAR 776 (1112)
Q Consensus 719 IF~~s~~~~~~l~~~L~~~----------------------g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~ 776 (1112)
||+++++.|..++..|... .+++.+-|.+++..+..-+-..|..|.+.|+|...- ..
T Consensus 1364 vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~ 1442 (1674)
T KOG0951|consen 1364 VFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CY 1442 (1674)
T ss_pred EEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-cc
Confidence 9999999998776655322 234444499999999999999999999999988766 77
Q ss_pred cCCCCCccEEEE----eCC------CCCHhHHHHHhcccCCCCCccEEEEEecCCccCchH
Q 001261 777 GLDVKELELVIN----FDA------PNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSP 827 (1112)
Q Consensus 777 GlDi~~v~~VI~----~d~------p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~ 827 (1112)
|+-...--+||. ||- +-.+....|++|++.| .|.|+++.......++.
T Consensus 1443 ~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yyk 1500 (1674)
T KOG0951|consen 1443 GTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYK 1500 (1674)
T ss_pred cccccceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHH
Confidence 777655444442 433 3357889999999998 56788888776655443
|
|
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.7e-13 Score=120.34 Aligned_cols=81 Identities=40% Similarity=0.651 Sum_probs=77.2
Q ss_pred HHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCC
Q 001261 729 ALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRA 808 (1112)
Q Consensus 729 ~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~ 808 (1112)
.++..|...++.+..+||+++..+|..++..|..|...|||+|++++.|+|++.+++||++++|++...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46777888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 001261 809 G 809 (1112)
Q Consensus 809 G 809 (1112)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 6
|
|
| >KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-11 Score=145.48 Aligned_cols=119 Identities=24% Similarity=0.257 Sum_probs=100.6
Q ss_pred hHHHHHHHHHhhhc-CCeEEEEeCCHHHHHHHHHHHHhc----------------------CCCeeeecCCCCHHHHHHH
Q 001261 700 RFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKH----------------------GYPCLSLHGAKDQTDREST 756 (1112)
Q Consensus 700 k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~----------------------g~~~~~ihg~~~~~~R~~~ 756 (1112)
|+..|+++|..... +.++|||..+....+.+..+|... |...+.|.|......|..+
T Consensus 1127 KmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~ 1206 (1567)
T KOG1015|consen 1127 KMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKW 1206 (1567)
T ss_pred ceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHH
Confidence 45556777766544 359999999999999988888542 4567889999999999999
Q ss_pred HHHhhcCC----ccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEe
Q 001261 757 ISDFKSNV----CNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFI 818 (1112)
Q Consensus 757 ~~~F~~g~----~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~ 818 (1112)
...|.+-. ..+||+|-+.+-|||+-.++.||+||..|+|.--+|.|=|+.|.|+...||+|-
T Consensus 1207 ~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYR 1272 (1567)
T KOG1015|consen 1207 AEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYR 1272 (1567)
T ss_pred HHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehh
Confidence 99998543 358999999999999999999999999999999999999999999987777653
|
|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.36 E-value=5e-11 Score=155.37 Aligned_cols=121 Identities=25% Similarity=0.315 Sum_probs=105.8
Q ss_pred hhHHHHHHHH-HhhhcCC---eEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcC--CccEEEecC
Q 001261 699 DRFLRLLELL-GEWYEKG---KILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN--VCNLLIATS 772 (1112)
Q Consensus 699 ~k~~~ll~~l-~~~~~~~---~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g--~~~VLVaT~ 772 (1112)
.|...+..+| ......+ ++|||++.....+.+..+|...++.++.++|.++...|..++..|.++ ...+|++|.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 5677777777 4444444 799999999999999999999999999999999999999999999986 456777888
Q ss_pred cccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEec
Q 001261 773 VAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFIS 819 (1112)
Q Consensus 773 v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~ 819 (1112)
+++.|||+...++||+||+.|++....|.+.|+.|.|++..+.++-.
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~ 818 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRL 818 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEe
Confidence 99999999999999999999999999999999999998876655433
|
|
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.1e-10 Score=137.82 Aligned_cols=287 Identities=16% Similarity=0.188 Sum_probs=178.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHH
Q 001261 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISE 586 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~ 586 (1112)
.+|-+|+|||||.+.+.++-..+.. .+..+|+|+..+.|+.++...++.. ++.-...|...... .+.
T Consensus 52 ~vVRSpMGTGKTtaLi~wLk~~l~~-------~~~~VLvVShRrSL~~sL~~rf~~~----~l~gFv~Y~d~~~~-~i~- 118 (824)
T PF02399_consen 52 LVVRSPMGTGKTTALIRWLKDALKN-------PDKSVLVVSHRRSLTKSLAERFKKA----GLSGFVNYLDSDDY-IID- 118 (824)
T ss_pred EEEECCCCCCcHHHHHHHHHHhccC-------CCCeEEEEEhHHHHHHHHHHHHhhc----CCCcceeeeccccc-ccc-
Confidence 4666999999998766555443322 3567999999999999988887763 22111122211111 000
Q ss_pred HhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHH-------HHHHhcCCCCcEEEEecccc
Q 001261 587 LKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQIT-------RIVQNIRPDRQTVLFSATFP 659 (1112)
Q Consensus 587 l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~-------~il~~~~~~~q~il~SAT~~ 659 (1112)
....+-++++...|..+.. ..+.++++|||||+-..+..-|.+.+. .+...++....+|++-||+.
T Consensus 119 -~~~~~rLivqIdSL~R~~~------~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln 191 (824)
T PF02399_consen 119 -GRPYDRLIVQIDSLHRLDG------SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLN 191 (824)
T ss_pred -ccccCeEEEEehhhhhccc------ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCC
Confidence 0124667777777755531 357789999999999766543332222 23345567788999999999
Q ss_pred HHHHHHHHHhcCC-CeEEEEcCcccccCCccEEEEe------------c-----------------------ccchhHHH
Q 001261 660 RQVEILARKVLNK-PVEIQVGGRSVVNKDITQLVEV------------R-----------------------PESDRFLR 703 (1112)
Q Consensus 660 ~~~~~l~~~~~~~-p~~i~i~~~~~~~~~i~q~~~~------------~-----------------------~~~~k~~~ 703 (1112)
..+-.|+..+.+. ++.+.+.........-.+-+.+ . ...+....
T Consensus 192 ~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF 271 (824)
T PF02399_consen 192 DQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTF 271 (824)
T ss_pred HHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhH
Confidence 9888888877653 4444443211100000000000 0 00111122
Q ss_pred HHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCc
Q 001261 704 LLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKEL 783 (1112)
Q Consensus 704 ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v 783 (1112)
+-.++.....+.+|-||+.|...++.++......+..++.++|..+..+.. . =+.++|+|.|+++..||++...
T Consensus 272 ~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv~----~--W~~~~VviYT~~itvG~Sf~~~ 345 (824)
T PF02399_consen 272 FSELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDVE----S--WKKYDVVIYTPVITVGLSFEEK 345 (824)
T ss_pred HHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccccc----c--ccceeEEEEeceEEEEeccchh
Confidence 223333334456888999999999999999999999999999987766332 2 2468999999999999999753
Q ss_pred --cEEEEeCCC----CCHhHHHHHhcccCCCCCccEEEEEecC
Q 001261 784 --ELVINFDAP----NHYEDYVHRVGRTGRAGRKGCAITFISE 820 (1112)
Q Consensus 784 --~~VI~~d~p----~s~~~y~QriGR~gR~G~~g~~i~~~~~ 820 (1112)
+-|+-|=-| .++.+..|++||+-.-. ....+++++.
T Consensus 346 HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d~ 387 (824)
T PF02399_consen 346 HFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYIDA 387 (824)
T ss_pred hceEEEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEec
Confidence 444444222 23556899999996554 5566666654
|
It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication |
| >KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.8e-11 Score=142.36 Aligned_cols=311 Identities=20% Similarity=0.267 Sum_probs=189.0
Q ss_pred HHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEE
Q 001261 495 AQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPV 574 (1112)
Q Consensus 495 ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~ 574 (1112)
...+.++..+.-+++-+.||+|||..+...+|..+..... +-..-+.+.-|++--+.-+.+.+.. .-+-.++-.
T Consensus 384 ~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~---g~~~na~v~qprrisaisiaerva~---er~e~~g~t 457 (1282)
T KOG0921|consen 384 SEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSN---GASFNAVVSQPRRISAISLAERVAN---ERGEEVGET 457 (1282)
T ss_pred HHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccc---cccccceeccccccchHHHHHHHHH---hhHHhhccc
Confidence 3444555566677888999999999999999988876432 1122344555888777755544322 222222223
Q ss_pred eCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchh-hhccCChhHHHHHHHhcCCCCcEEE
Q 001261 575 YGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADR-MFDMGFEPQITRIVQNIRPDRQTVL 653 (1112)
Q Consensus 575 ~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~-~~~~gf~~~i~~il~~~~~~~q~il 653 (1112)
+|....+..... ..---|.+||.|.++..+.. -+..+.++|+||.|. -.+..|.-.+..-+..+.++..+++
T Consensus 458 vgy~vRf~Sa~p-rpyg~i~fctvgvllr~~e~------glrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~l 530 (1282)
T KOG0921|consen 458 CGYNVRFDSATP-RPYGSIMFCTVGVLLRMMEN------GLRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVL 530 (1282)
T ss_pred cccccccccccc-ccccceeeeccchhhhhhhh------cccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhh
Confidence 333333222111 11136899999999988864 466789999999994 3334455555444444455555666
Q ss_pred EeccccHH--------------------HHHHHHHhcCCCeEEEEcCcccccCC-ccEE-----------E-Eec-----
Q 001261 654 FSATFPRQ--------------------VEILARKVLNKPVEIQVGGRSVVNKD-ITQL-----------V-EVR----- 695 (1112)
Q Consensus 654 ~SAT~~~~--------------------~~~l~~~~~~~p~~i~i~~~~~~~~~-i~q~-----------~-~~~----- 695 (1112)
+|||+..+ +..|....+..+.....+........ .... . .++
T Consensus 531 msatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~ 610 (1282)
T KOG0921|consen 531 MSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYN 610 (1282)
T ss_pred hhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhc
Confidence 66665322 11122222211111111100000000 0000 0 000
Q ss_pred ----------ccchhHHHHHHHHHhhh----cCCeEEEEeCCHHHHHHHHHHHHhc-------CCCeeeecCCCCHHHHH
Q 001261 696 ----------PESDRFLRLLELLGEWY----EKGKILIFVHSQEKCDALFRDLLKH-------GYPCLSLHGAKDQTDRE 754 (1112)
Q Consensus 696 ----------~~~~k~~~ll~~l~~~~----~~~~vLIF~~s~~~~~~l~~~L~~~-------g~~~~~ihg~~~~~~R~ 754 (1112)
...+....|++.+.... -.+-|+||.+.-..+..|+..|..+ .+.++.+|+.+...+..
T Consensus 611 ~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqr 690 (1282)
T KOG0921|consen 611 ESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQR 690 (1282)
T ss_pred chhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhh
Confidence 00111122333333322 2367999999999999999999765 47899999999999999
Q ss_pred HHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCC------------------CCCHhHHHHHhcccCCCCCccEEEE
Q 001261 755 STISDFKSNVCNLLIATSVAARGLDVKELELVINFDA------------------PNHYEDYVHRVGRTGRAGRKGCAIT 816 (1112)
Q Consensus 755 ~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~------------------p~s~~~y~QriGR~gR~G~~g~~i~ 816 (1112)
++++....|..+||+.|+++...+.|.++.+||+.+. ..+....+||-||+||. ++|.|+.
T Consensus 691 kvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~ 769 (1282)
T KOG0921|consen 691 KVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFH 769 (1282)
T ss_pred hccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-ccccccc
Confidence 9999999999999999999999999999888886332 11345668999999986 4788877
Q ss_pred Eec
Q 001261 817 FIS 819 (1112)
Q Consensus 817 ~~~ 819 (1112)
+++
T Consensus 770 lcs 772 (1282)
T KOG0921|consen 770 LCS 772 (1282)
T ss_pred ccH
Confidence 664
|
|
| >COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.4e-09 Score=132.98 Aligned_cols=309 Identities=19% Similarity=0.257 Sum_probs=173.9
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI 584 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~ 584 (1112)
+..+|.--||||||++.+..+- .+... ...|.++|||-++.|-.|+..+|..+........ .-.+..+..
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~-~l~~~-----~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk 343 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLAR-LLLEL-----PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELK 343 (962)
T ss_pred CceEEEeecCCchHHHHHHHHH-HHHhc-----cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHH
Confidence 4689999999999987554443 33332 3579999999999999999999999876443221 233344444
Q ss_pred HHHhcC-CeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHH
Q 001261 585 SELKRG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVE 663 (1112)
Q Consensus 585 ~~l~~~-~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~ 663 (1112)
..|..+ ..|||+|-..|-..+....... .-..--+||+|||||. +++.....+-..+ ++...++||+|+--.-.
T Consensus 344 ~~l~~~~~~ii~TTIQKf~~~~~~~~~~~-~~~~~ivvI~DEaHRS---Q~G~~~~~~~~~~-~~a~~~gFTGTPi~~~d 418 (962)
T COG0610 344 ELLEDGKGKIIVTTIQKFNKAVKEDELEL-LKRKNVVVIIDEAHRS---QYGELAKLLKKAL-KKAIFIGFTGTPIFKED 418 (962)
T ss_pred HHHhcCCCcEEEEEecccchhhhcccccc-cCCCcEEEEEechhhc---cccHHHHHHHHHh-ccceEEEeeCCcccccc
Confidence 445444 4899999999987775531111 1122237899999993 3444444444444 34779999999742211
Q ss_pred HH-HHHhcCCCeEEEEcCcccccCCccEEE-Ee------cccc--------------------h----------------
Q 001261 664 IL-ARKVLNKPVEIQVGGRSVVNKDITQLV-EV------RPES--------------------D---------------- 699 (1112)
Q Consensus 664 ~l-~~~~~~~p~~i~i~~~~~~~~~i~q~~-~~------~~~~--------------------~---------------- 699 (1112)
.- ....++..+....-........+...+ .. .... .
T Consensus 419 ~~tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 498 (962)
T COG0610 419 KDTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLA 498 (962)
T ss_pred ccchhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcch
Confidence 11 122233332222111110000000000 00 0000 0
Q ss_pred -hHHH----HHHHHHh-hhcCCeEEEEeCCHHHHHHHHHHHHhc-----------C--------C----CeeeecCCCCH
Q 001261 700 -RFLR----LLELLGE-WYEKGKILIFVHSQEKCDALFRDLLKH-----------G--------Y----PCLSLHGAKDQ 750 (1112)
Q Consensus 700 -k~~~----ll~~l~~-~~~~~~vLIF~~s~~~~~~l~~~L~~~-----------g--------~----~~~~ihg~~~~ 750 (1112)
+... +...+.. .....++.+.|.+...|..+.+.+... + + .....|.. ..
T Consensus 499 ~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~ 577 (962)
T COG0610 499 VRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAK-LK 577 (962)
T ss_pred HHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHH-HH
Confidence 0000 1111111 112357778787777555554443221 0 0 00000111 12
Q ss_pred HHHHHHHHHh--hcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCC--C--CccEEEEEecCCccC
Q 001261 751 TDRESTISDF--KSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRA--G--RKGCAITFISEEDAK 824 (1112)
Q Consensus 751 ~~R~~~~~~F--~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~--G--~~g~~i~~~~~~d~~ 824 (1112)
.........| .....+|||.++++-+|.|.|.++++. +|-|--.-..+|.+-||.|. + ..|.++.|+.
T Consensus 578 ~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g----- 651 (962)
T COG0610 578 DEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG----- 651 (962)
T ss_pred HHHhhhhhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEECcc-----
Confidence 2233344443 356789999999999999999999887 56667777899999999995 3 2366666665
Q ss_pred chHHHHHHHhh
Q 001261 825 YSPDLVKALEL 835 (1112)
Q Consensus 825 ~~~~i~~~l~~ 835 (1112)
....+.+++..
T Consensus 652 l~e~l~~Al~~ 662 (962)
T COG0610 652 LKEALKKALKL 662 (962)
T ss_pred hHHHHHHHHHH
Confidence 55566666654
|
|
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.9e-10 Score=130.09 Aligned_cols=160 Identities=19% Similarity=0.209 Sum_probs=94.1
Q ss_pred HHHHHHHHHH-------------cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHH
Q 001261 493 IQAQALPVIM-------------SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSD 559 (1112)
Q Consensus 493 iQ~~ai~~il-------------~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~ 559 (1112)
+|..++.+++ ..+.+|++.++|+|||++.+..+. .+...... ..-..+|||||. .+..||..+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~~--~~~~~~LIv~P~-~l~~~W~~E 76 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALIS-YLKNEFPQ--RGEKKTLIVVPS-SLLSQWKEE 76 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHH-HHHHCCTT--SS-S-EEEEE-T-TTHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhh-hhhhcccc--ccccceeEeecc-chhhhhhhh
Confidence 5777877764 335788899999999987666554 33332110 011248999999 788999999
Q ss_pred HHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHH
Q 001261 560 IRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQIT 639 (1112)
Q Consensus 560 ~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~ 639 (1112)
+.+++....+++....|...............+|+|+|+..+.............--.+.+|||||+|.+-+ ......
T Consensus 77 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~--~~s~~~ 154 (299)
T PF00176_consen 77 IEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKN--KDSKRY 154 (299)
T ss_dssp HHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTT--TTSHHH
T ss_pred hccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEeccccccc--cccccc
Confidence 999986555666655555412222222334579999999988711000000011113488999999999853 344555
Q ss_pred HHHHhcCCCCcEEEEecccc
Q 001261 640 RIVQNIRPDRQTVLFSATFP 659 (1112)
Q Consensus 640 ~il~~~~~~~q~il~SAT~~ 659 (1112)
..+..+. ....+++|||+.
T Consensus 155 ~~l~~l~-~~~~~lLSgTP~ 173 (299)
T PF00176_consen 155 KALRKLR-ARYRWLLSGTPI 173 (299)
T ss_dssp HHHHCCC-ECEEEEE-SS-S
T ss_pred ccccccc-cceEEeeccccc
Confidence 5555565 566889999963
|
g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W. |
| >KOG1960 consensus Predicted RNA-binding protein, contains KH domains [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.7e-12 Score=134.07 Aligned_cols=84 Identities=23% Similarity=0.202 Sum_probs=77.7
Q ss_pred cCeEEEEEecCCCccchhhcccchhhhhHHhhhCCeEeccceeeCCCCCC-CCCCCceEEEEEeCCHHHHHHHHHHHHHH
Q 001261 1011 EHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYFPPSRIA-GPGERKLYLFIEGPTEQSVKRAKAELKRV 1089 (1112)
Q Consensus 1011 ~~~~~~~~INd~pq~~R~~~t~~~~~~~i~~~tg~~i~~kG~~~~~~~~~-~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~ 1089 (1112)
++..++.+|||.||.||+.+|.++++++|.+.||+.|.+||+|+++..++ ++++++||+||.|+|.+.|++||+.|+-+
T Consensus 91 ~~~~a~~~iN~~~~~~~~~~TRg~~~d~Ie~~~G~~~~~RGs~~~~El~~vg~~~~pLv~hI~~~T~Ei~~~Ai~RIkgv 170 (531)
T KOG1960|consen 91 AAAAAARRINESLQSTKATSTRGTSYDHIEGITGTTSASRGSAPAPELPPVGSSEGPLVDHIPPSTAEITSKAIERIKGV 170 (531)
T ss_pred HHHHHHHHhhcccccccceeccchhHHhhhhhccceeeccCCCCCccCCCCCCCCCcceeecCCccHHHHHHHHhhCccc
Confidence 46778999999999999999999999999999999999999999999987 57899999999999999999999999966
Q ss_pred HHHHH
Q 001261 1090 LEDFT 1094 (1112)
Q Consensus 1090 ~~e~~ 1094 (1112)
+...+
T Consensus 171 ~~~~~ 175 (531)
T KOG1960|consen 171 FMQDV 175 (531)
T ss_pred eeecc
Confidence 65554
|
|
| >COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.1e-09 Score=125.34 Aligned_cols=317 Identities=22% Similarity=0.263 Sum_probs=190.3
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceE
Q 001261 492 PIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRC 571 (1112)
Q Consensus 492 ~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~ 571 (1112)
|+=.|.|-.+.-...-|.-..||-|||+++.+|+.-..+. |..+.+|+..--||.--..++..++..+|+.+
T Consensus 81 ~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~--------gkgVhvVTvNdYLA~RDae~m~~l~~~LGlsv 152 (822)
T COG0653 81 HFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA--------GKGVHVVTVNDYLARRDAEWMGPLYEFLGLSV 152 (822)
T ss_pred hhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcC--------CCCcEEeeehHHhhhhCHHHHHHHHHHcCCce
Confidence 3334555555555667889999999999999998855433 55677888888999999999999999999999
Q ss_pred EEEeCCCChHHHHHHHhcCCeEEEeCchHHH-HHHHhcC---CcccccCCceEEEeccchhhh-c--------cC---C-
Q 001261 572 VPVYGGSGVAQQISELKRGTEIVVCTPGRMI-DILCTSG---GKITNLRRVTYLVMDEADRMF-D--------MG---F- 634 (1112)
Q Consensus 572 ~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~-~~l~~~~---~~~~~l~~i~~vViDEah~~~-~--------~g---f- 634 (1112)
.+...+.+..+.-.... |+|.++|...|- ++|..+- .....+..+.|.|+||+|-++ | .| .
T Consensus 153 G~~~~~m~~~ek~~aY~--~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~~~~ 230 (822)
T COG0653 153 GVILAGMSPEEKRAAYA--CDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPAEDS 230 (822)
T ss_pred eeccCCCChHHHHHHHh--cCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeecccccC
Confidence 99999997777655554 899999987661 2221110 000123457889999999653 1 11 1
Q ss_pred ---hhHHHHHHHhcCCC--------CcEEEEecc-cc--------------HHHH-------HH-HHH-hcCCC------
Q 001261 635 ---EPQITRIVQNIRPD--------RQTVLFSAT-FP--------------RQVE-------IL-ARK-VLNKP------ 673 (1112)
Q Consensus 635 ---~~~i~~il~~~~~~--------~q~il~SAT-~~--------------~~~~-------~l-~~~-~~~~p------ 673 (1112)
...+..++..+... ...|.|+-. +. ..+. .+ +.. +..+-
T Consensus 231 ~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYIVrd 310 (822)
T COG0653 231 SELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYIVRD 310 (822)
T ss_pred chHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeEEec
Confidence 22223333222211 111111111 00 0000 00 000 00110
Q ss_pred ------------------------------------------------------------------------------eE
Q 001261 674 ------------------------------------------------------------------------------VE 675 (1112)
Q Consensus 674 ------------------------------------------------------------------------------~~ 675 (1112)
+.
T Consensus 311 ~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l~vv 390 (822)
T COG0653 311 GEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGLDVV 390 (822)
T ss_pred CeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCCcee
Confidence 00
Q ss_pred EEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHH
Q 001261 676 IQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRE 754 (1112)
Q Consensus 676 i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~ 754 (1112)
+.+...+....+... ..+.....|+..++..+..... +.++||.+.+++..+.+...|.+.|++..++...-...+
T Consensus 391 ~iPTnrp~~R~D~~D-~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~E-- 467 (822)
T COG0653 391 VIPTNRPIIRLDEPD-LVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHARE-- 467 (822)
T ss_pred eccCCCcccCCCCcc-ccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHHHH--
Confidence 000001100000000 1122345688888887776664 459999999999999999999999999888877665333
Q ss_pred HHHHHhhcCC-ccEEEecCcccccCCCCCccE-----------EEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCc
Q 001261 755 STISDFKSNV-CNLLIATSVAARGLDVKELEL-----------VINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEED 822 (1112)
Q Consensus 755 ~~~~~F~~g~-~~VLVaT~v~~~GlDi~~v~~-----------VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d 822 (1112)
.-+-.+ .|. --|-|||++|+||-||.--.. ||--.--.|----.|--||+||-|-+|.+-.|++-.|
T Consensus 468 A~Iia~-AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD 546 (822)
T COG0653 468 AEIIAQ-AGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 546 (822)
T ss_pred HHHHhh-cCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhHH
Confidence 323233 343 458899999999999854332 2211111222223488899999999998887776544
|
|
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.3e-10 Score=107.41 Aligned_cols=135 Identities=17% Similarity=0.175 Sum_probs=79.7
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ 583 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~ 583 (1112)
|.-.++-..+|+|||.-.+.-++..... .+.++|||.|||.++..+++.++. .++++.....+.
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~-------~~~rvLvL~PTRvva~em~~aL~~----~~~~~~t~~~~~----- 67 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIK-------RRLRVLVLAPTRVVAEEMYEALKG----LPVRFHTNARMR----- 67 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHH-------TT--EEEEESSHHHHHHHHHHTTT----SSEEEESTTSS------
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHH-------ccCeEEEecccHHHHHHHHHHHhc----CCcccCceeeec-----
Confidence 4456778899999998766666655443 367899999999999877766543 344443221111
Q ss_pred HHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhc--CCCCcEEEEeccccHH
Q 001261 584 ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI--RPDRQTVLFSATFPRQ 661 (1112)
Q Consensus 584 ~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~--~~~~q~il~SAT~~~~ 661 (1112)
....+.-|-|+|++.+..++.. . ..+.++++||+||||-+-... . .....+..+ .....+|++|||+|..
T Consensus 68 --~~~g~~~i~vMc~at~~~~~~~-p---~~~~~yd~II~DEcH~~Dp~s-I-A~rg~l~~~~~~g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 68 --THFGSSIIDVMCHATYGHFLLN-P---CRLKNYDVIIMDECHFTDPTS-I-AARGYLRELAESGEAKVIFMTATPPGS 139 (148)
T ss_dssp -----SSSSEEEEEHHHHHHHHHT-S---SCTTS-SEEEECTTT--SHHH-H-HHHHHHHHHHHTTS-EEEEEESS-TT-
T ss_pred --cccCCCcccccccHHHHHHhcC-c---ccccCccEEEEeccccCCHHH-H-hhheeHHHhhhccCeeEEEEeCCCCCC
Confidence 1235567889999999888765 3 346789999999999632111 0 111122222 1235799999999865
Q ss_pred H
Q 001261 662 V 662 (1112)
Q Consensus 662 ~ 662 (1112)
.
T Consensus 140 ~ 140 (148)
T PF07652_consen 140 E 140 (148)
T ss_dssp -
T ss_pred C
Confidence 4
|
The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A .... |
| >smart00488 DEXDc2 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-08 Score=114.34 Aligned_cols=76 Identities=26% Similarity=0.372 Sum_probs=58.6
Q ss_pred CCCCCChHHHHHHHH----HHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHH
Q 001261 485 LNYEKPMPIQAQALP----VIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDI 560 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~----~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~ 560 (1112)
+.|. |+|.|.+.+. .+..|..+|+.+|||+|||++|++|++.++...... ..+.+++|+++|..+..|....+
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~l 81 (289)
T smart00488 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc--ccccceeEEeccHHHHHHHHHHH
Confidence 4454 6999999554 455789999999999999999999999876653211 02347899999999998887777
Q ss_pred HHH
Q 001261 561 RKF 563 (1112)
Q Consensus 561 ~~~ 563 (1112)
+++
T Consensus 82 ~~~ 84 (289)
T smart00488 82 RKL 84 (289)
T ss_pred Hhc
Confidence 665
|
|
| >smart00489 DEXDc3 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-08 Score=114.34 Aligned_cols=76 Identities=26% Similarity=0.372 Sum_probs=58.6
Q ss_pred CCCCCChHHHHHHHH----HHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHH
Q 001261 485 LNYEKPMPIQAQALP----VIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDI 560 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~----~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~ 560 (1112)
+.|. |+|.|.+.+. .+..|..+|+.+|||+|||++|++|++.++...... ..+.+++|+++|..+..|....+
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~l 81 (289)
T smart00489 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc--ccccceeEEeccHHHHHHHHHHH
Confidence 4454 6999999554 455789999999999999999999999876653211 02347899999999998887777
Q ss_pred HHH
Q 001261 561 RKF 563 (1112)
Q Consensus 561 ~~~ 563 (1112)
+++
T Consensus 82 ~~~ 84 (289)
T smart00489 82 RKL 84 (289)
T ss_pred Hhc
Confidence 665
|
|
| >PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane | Back alignment and domain information |
|---|
Probab=98.83 E-value=9e-08 Score=104.17 Aligned_cols=133 Identities=21% Similarity=0.291 Sum_probs=98.5
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+| ..|+++|..++-.+..|+ |+...||-|||++..+|++.+.+. |..|=|++.+.-||..=+.++..|+
T Consensus 74 ~g-~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~--------G~~V~vvT~NdyLA~RD~~~~~~~y 142 (266)
T PF07517_consen 74 LG-LRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ--------GKGVHVVTSNDYLAKRDAEEMRPFY 142 (266)
T ss_dssp TS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT--------SS-EEEEESSHHHHHHHHHHHHHHH
T ss_pred cC-CcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh--------cCCcEEEeccHHHhhccHHHHHHHH
Confidence 44 478899999987777776 999999999999998888776554 6678899999999999999999999
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHH-HHHHhcCC---cccccCCceEEEeccchhhh
Q 001261 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMI-DILCTSGG---KITNLRRVTYLVMDEADRMF 630 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~-~~l~~~~~---~~~~l~~i~~vViDEah~~~ 630 (1112)
..+|+.+.+++++.+......... ++|+++|...|. ++|..+-. .......+.++||||+|.|+
T Consensus 143 ~~LGlsv~~~~~~~~~~~r~~~Y~--~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 143 EFLGLSVGIITSDMSSEERREAYA--ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHTT--EEEEETTTEHHHHHHHHH--SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHhhhccccCccccCHHHHHHHHh--CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 999999999999988655433333 789999999875 34443211 11114678899999999654
|
SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A .... |
| >KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.6e-07 Score=103.98 Aligned_cols=108 Identities=27% Similarity=0.297 Sum_probs=90.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcC------------------CCeeeecCCCCHHHHHHHHHHhhcCC---ccEEEecCc
Q 001261 715 GKILIFVHSQEKCDALFRDLLKHG------------------YPCLSLHGAKDQTDRESTISDFKSNV---CNLLIATSV 773 (1112)
Q Consensus 715 ~~vLIF~~s~~~~~~l~~~L~~~g------------------~~~~~ihg~~~~~~R~~~~~~F~~g~---~~VLVaT~v 773 (1112)
.++|||.......+.+...|.+.. .+.+-+.|..+..+|.+.|..|.+-- --+|++|..
T Consensus 720 ~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstra 799 (1387)
T KOG1016|consen 720 EKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRA 799 (1387)
T ss_pred ceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhcc
Confidence 378999999999999999887752 23457789999999999999998532 257889999
Q ss_pred ccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCc
Q 001261 774 AARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEED 822 (1112)
Q Consensus 774 ~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d 822 (1112)
..-|||+-..+.+|+|++.|++.--.|.+-|+-|.|++..||++-.--|
T Consensus 800 g~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD 848 (1387)
T KOG1016|consen 800 GSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMD 848 (1387)
T ss_pred ccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhh
Confidence 9999999999999999999999888999999999999887777644333
|
|
| >PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=8.8e-07 Score=110.34 Aligned_cols=73 Identities=15% Similarity=0.232 Sum_probs=56.9
Q ss_pred CccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCC-----CC----ccE-EEEEecCCccCchHHHHHHH
Q 001261 764 VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRA-----GR----KGC-AITFISEEDAKYSPDLVKAL 833 (1112)
Q Consensus 764 ~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~-----G~----~g~-~i~~~~~~d~~~~~~i~~~l 833 (1112)
..++|++-+++..|.|.|++-++..+.-..|...-.|.+||..|. |. ... -.++++.....++..|++-+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 578999999999999999999999998888888889999999984 21 112 22345566777888888877
Q ss_pred hhc
Q 001261 834 ELS 836 (1112)
Q Consensus 834 ~~~ 836 (1112)
+..
T Consensus 581 ~~~ 583 (986)
T PRK15483 581 NSD 583 (986)
T ss_pred Hhh
Confidence 554
|
|
| >TIGR00596 rad1 DNA repair protein (rad1) | Back alignment and domain information |
|---|
Probab=98.30 E-value=9.1e-06 Score=101.65 Aligned_cols=66 Identities=21% Similarity=0.149 Sum_probs=47.0
Q ss_pred CCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccc
Q 001261 590 GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 590 ~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
...|+++||..|..-|..+ ..++..|+.|||||||++....-..-+..++...++..-+.+|||.+
T Consensus 7 ~ggi~~~T~rIl~~DlL~~---ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP 72 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTG---IIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNP 72 (814)
T ss_pred cCCEEEEechhhHhHHhcC---CCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCC
Confidence 3579999999986655443 36889999999999999865444445555555555555567777764
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit |
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.5e-07 Score=110.15 Aligned_cols=255 Identities=22% Similarity=0.265 Sum_probs=150.8
Q ss_pred hHHHHHHHHHHH-cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCc
Q 001261 491 MPIQAQALPVIM-SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGV 569 (1112)
Q Consensus 491 t~iQ~~ai~~il-~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i 569 (1112)
.|+|.+.+-.+. ...++++.+|||+|||++|.+.++..+...+ +.++++++|-.+|+..-.+.+......-|+
T Consensus 929 n~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p------~~kvvyIap~kalvker~~Dw~~r~~~~g~ 1002 (1230)
T KOG0952|consen 929 NPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYP------GSKVVYIAPDKALVKERSDDWSKRDELPGI 1002 (1230)
T ss_pred CCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCC------CccEEEEcCCchhhcccccchhhhcccCCc
Confidence 356666554443 2456888899999999999999998876643 578999999999998777777665444488
Q ss_pred eEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhc----
Q 001261 570 RCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI---- 645 (1112)
Q Consensus 570 ~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~---- 645 (1112)
+++-+.|..... ...+ ..++|+|+||.....+...+ ....-+.+++++|+||.|.+.+ +..+.+..|....
T Consensus 1003 k~ie~tgd~~pd--~~~v-~~~~~~ittpek~dgi~Rsw-~~r~~v~~v~~iv~de~hllg~-~rgPVle~ivsr~n~~s 1077 (1230)
T KOG0952|consen 1003 KVIELTGDVTPD--VKAV-READIVITTPEKWDGISRSW-QTRKYVQSVSLIVLDEIHLLGE-DRGPVLEVIVSRMNYIS 1077 (1230)
T ss_pred eeEeccCccCCC--hhhe-ecCceEEcccccccCccccc-cchhhhccccceeecccccccC-CCcceEEEEeeccccCc
Confidence 899888877554 1222 34799999999987776543 3334578899999999998654 4444444332222
Q ss_pred ---CCCCcEEEEeccccHHHHHHHHHhcCCC------------eEEEEcCcccccCCccEEEEecccchhHHHHHHHHHh
Q 001261 646 ---RPDRQTVLFSATFPRQVEILARKVLNKP------------VEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGE 710 (1112)
Q Consensus 646 ---~~~~q~il~SAT~~~~~~~l~~~~~~~p------------~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~ 710 (1112)
.+..+.+++|--+ .....++.++...+ ..+.+.+.+. ++ .+.-...........+..
T Consensus 1078 ~~t~~~vr~~glsta~-~na~dla~wl~~~~~~nf~~svrpvp~~~~i~gfp~------~~-~cprm~smnkpa~qaik~ 1149 (1230)
T KOG0952|consen 1078 SQTEEPVRYLGLSTAL-ANANDLADWLNIKDMYNFRPSVRPVPLEVHIDGFPG------QH-YCPRMMSMNKPAFQAIKT 1149 (1230)
T ss_pred cccCcchhhhhHhhhh-hccHHHHHHhCCCCcCCCCcccccCCceEeecCCCc------hh-cchhhhhcccHHHHHHhc
Confidence 2233444444332 12233333322222 2222221110 01 111111223345566666
Q ss_pred hhcCCeEEEEeCCHHHHHHHHHHHHh----cCCCeeeecCCCCHHHHHHHHHHhhcCCcc
Q 001261 711 WYEKGKILIFVHSQEKCDALFRDLLK----HGYPCLSLHGAKDQTDRESTISDFKSNVCN 766 (1112)
Q Consensus 711 ~~~~~~vLIF~~s~~~~~~l~~~L~~----~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~ 766 (1112)
..+..++|||+.+.......+..|.. ..-+..+++- +..+-+.++....+...+
T Consensus 1150 ~sp~~p~lifv~srrqtrlta~~li~~~~~~~~p~~fl~~--de~e~e~~~~~~~d~~Lk 1207 (1230)
T KOG0952|consen 1150 HSPIKPVLIFVSSRRQTRLTALDLIASCATEDNPKQFLNM--DELELEIIMSKVRDTNLK 1207 (1230)
T ss_pred CCCCCceEEEeecccccccchHhHHhhccCCCCchhccCC--CHHHHHHHHHHhcccchh
Confidence 66778999999987765544444432 2223333433 355556666666555433
|
|
| >KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.18 E-value=7.8e-06 Score=100.02 Aligned_cols=102 Identities=20% Similarity=0.212 Sum_probs=91.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCC-cc-EEEecCcccccCCCCCccEEEEeCCC
Q 001261 715 GKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNV-CN-LLIATSVAARGLDVKELELVINFDAP 792 (1112)
Q Consensus 715 ~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~-~~-VLVaT~v~~~GlDi~~v~~VI~~d~p 792 (1112)
.++|||+.-...+..++..|...++....+.|.|....|...+..|..+. .. .|++..+...||++..+.+||..|+-
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 38999999999999999999988999999999999999999999999554 23 45677888899999999999999999
Q ss_pred CCHhHHHHHhcccCCCCCccEEEE
Q 001261 793 NHYEDYVHRVGRTGRAGRKGCAIT 816 (1112)
Q Consensus 793 ~s~~~y~QriGR~gR~G~~g~~i~ 816 (1112)
|++..--|.+-|+.|.|+.-.+.+
T Consensus 620 wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 620 WNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred cChHHHHHHHHHHHHhcccceeee
Confidence 999999999999999998765544
|
|
| >COG3587 Restriction endonuclease [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0001 Score=88.73 Aligned_cols=74 Identities=14% Similarity=0.208 Sum_probs=57.6
Q ss_pred CCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCC--CCccE-----------EEEEecCCccCchHHH
Q 001261 763 NVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRA--GRKGC-----------AITFISEEDAKYSPDL 829 (1112)
Q Consensus 763 g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~--G~~g~-----------~i~~~~~~d~~~~~~i 829 (1112)
...++|.+--++-.|.|-|+|-.++-+....|...=.|.+||.-|. ...|. -.+|+...+..++..|
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 4578999999999999999999999999999999999999999983 22222 2335566677777777
Q ss_pred HHHHhhc
Q 001261 830 VKALELS 836 (1112)
Q Consensus 830 ~~~l~~~ 836 (1112)
++-+...
T Consensus 562 qkEI~~~ 568 (985)
T COG3587 562 QKEINDE 568 (985)
T ss_pred HHHHHHh
Confidence 7766543
|
|
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.8e-05 Score=84.24 Aligned_cols=72 Identities=19% Similarity=0.317 Sum_probs=49.9
Q ss_pred ChHHHHHHHHHHHcCCC-EEEEcCCCChHHHHHHHHHHHHHhcC-CCCCCCCCCcEEEEccchhHHHHHHHHHHH
Q 001261 490 PMPIQAQALPVIMSGRD-CIGVAKTGSGKTLAFVLPMLRHIKDQ-PPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 490 pt~iQ~~ai~~il~g~d-vii~a~TGsGKT~~~llp~l~~l~~~-~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~ 562 (1112)
+.+.|..||..++.... .+|.||.|+|||.+.. .++..+... .......+..+||++||...+.++...+.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~-~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLA-SIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHH-HHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHH-HHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 56899999999999998 9999999999996433 344444110 001123477899999999999988887777
|
|
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
Probab=98.04 E-value=8.9e-06 Score=85.21 Aligned_cols=146 Identities=16% Similarity=0.248 Sum_probs=75.6
Q ss_pred CCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHH-------HHHH
Q 001261 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQI-------HSDI 560 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~-------~~~~ 560 (1112)
...+..|..++.+++...-+++.|+.|||||+.++..++..+... .-.+++|+-|+.+....+ .+.+
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g------~~~kiii~Rp~v~~~~~lGflpG~~~eK~ 76 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG------EYDKIIITRPPVEAGEDLGFLPGDLEEKM 76 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT------S-SEEEEEE-S--TT----SS--------
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC------CCcEEEEEecCCCCccccccCCCCHHHHH
Confidence 456789999999999888888999999999999999999888762 234566766766431111 0111
Q ss_pred HHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHH
Q 001261 561 RKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITR 640 (1112)
Q Consensus 561 ~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~ 640 (1112)
.-++.++--....+++.. .+..+.....|-+.++..+ . | ..|+ -++||||||+.+. ..++..
T Consensus 77 ~p~~~p~~d~l~~~~~~~----~~~~~~~~~~Ie~~~~~~i----R---G--rt~~-~~~iIvDEaQN~t----~~~~k~ 138 (205)
T PF02562_consen 77 EPYLRPIYDALEELFGKE----KLEELIQNGKIEIEPLAFI----R---G--RTFD-NAFIIVDEAQNLT----PEELKM 138 (205)
T ss_dssp -TTTHHHHHHHTTTS-TT----CHHHHHHTTSEEEEEGGGG----T---T----B--SEEEEE-SGGG------HHHHHH
T ss_pred HHHHHHHHHHHHHHhChH----hHHHHhhcCeEEEEehhhh----c---C--cccc-ceEEEEecccCCC----HHHHHH
Confidence 111110000000000111 1222333455666665533 1 1 2333 3899999999864 567888
Q ss_pred HHHhcCCCCcEEEEecc
Q 001261 641 IVQNIRPDRQTVLFSAT 657 (1112)
Q Consensus 641 il~~~~~~~q~il~SAT 657 (1112)
++..+..+.++|++.-.
T Consensus 139 ilTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 139 ILTRIGEGSKIIITGDP 155 (205)
T ss_dssp HHTTB-TT-EEEEEE--
T ss_pred HHcccCCCcEEEEecCc
Confidence 88888888888776554
|
; GO: 0005524 ATP binding; PDB: 3B85_A. |
| >KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0015 Score=74.53 Aligned_cols=146 Identities=17% Similarity=0.282 Sum_probs=82.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCC-------CeeeecCCCCHHHHHHHHHHhh----cCCccEE--EecCcccccCCC
Q 001261 714 KGKILIFVHSQEKCDALFRDLLKHGY-------PCLSLHGAKDQTDRESTISDFK----SNVCNLL--IATSVAARGLDV 780 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~g~-------~~~~ihg~~~~~~R~~~~~~F~----~g~~~VL--VaT~v~~~GlDi 780 (1112)
++.+++|+++.-..+.+.......|+ +.+.| +.-+..+-..++..+. +|.-.|| ||-.-.+.|+|+
T Consensus 530 pdG~v~ff~sylYmesiv~~w~~~gil~ei~k~KL~fI-etpD~~ETs~al~ny~~aC~~gRGavl~sVargkVsEgidF 608 (755)
T KOG1131|consen 530 PDGIVCFFPSYLYMESIVSRWYEQGILDEIMKYKLLFI-ETPDFRETSLALANYRYACDNGRGAVLLSVARGKVSEGIDF 608 (755)
T ss_pred CCceEEEEehHHHHHHHHHHHHHHhHHHHHhhCceEEE-eCCchhhhHHHHHHHHHHhcCCCCceEEEEecCccccCccc
Confidence 35688899998877777666555432 33333 2222222233444333 5655566 566788899999
Q ss_pred CCcc--EEEEeCCCCCHh---------------------HH---------HHHhcccCCCCCccEEEEEe-cCC----cc
Q 001261 781 KELE--LVINFDAPNHYE---------------------DY---------VHRVGRTGRAGRKGCAITFI-SEE----DA 823 (1112)
Q Consensus 781 ~~v~--~VI~~d~p~s~~---------------------~y---------~QriGR~gR~G~~g~~i~~~-~~~----d~ 823 (1112)
.+-- .||++++|.-.. +| .|.+||+-|. +.-+.+.++ ++. |.
T Consensus 609 ~hhyGR~ViM~gIP~qytesriLkarle~Lrd~~~irE~dflTFDAmRhaAQC~GrvLr~-K~dYg~mI~aDkRf~R~dK 687 (755)
T KOG1131|consen 609 DHHYGREVIMEGIPYQYTESRILKARLEYLRDQFQIRENDFLTFDAMRHAAQCLGRVLRG-KTDYGLMIFADKRFSRGDK 687 (755)
T ss_pred ccccCceEEEEeccchhhHHHHHHHHHHHHHHHhcccccceechHhHHHHHHHHHHHHhc-cccceeeEeeehhhccccc
Confidence 9866 999999997422 11 2788999985 344444444 322 21
Q ss_pred --CchHHHHHHHhhccCCCChh-HHHHHHHHHHHHhhhhhc
Q 001261 824 --KYSPDLVKALELSEQVVPDD-LKALADSFMAKVNQGLEQ 861 (1112)
Q Consensus 824 --~~~~~i~~~l~~~~~~vp~~-l~~~~~~~~~~~~~~~~~ 861 (1112)
+.-..|...+.....-+..+ -..++..|...+.+....
T Consensus 688 R~klp~wi~~~l~~~~~nlstd~a~~varrflR~maQp~~k 728 (755)
T KOG1131|consen 688 RSKLPKWIRNHLFDAKLNLSTDMANQVARRFLRLMAQPFDK 728 (755)
T ss_pred hhhhhHHHHhhhhhhccCCCcchhHHHHHHHHHHhcCCCCc
Confidence 12223444444333333322 245666677776665543
|
|
| >PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 | Back alignment and domain information |
|---|
Probab=97.98 E-value=4.1e-05 Score=83.70 Aligned_cols=175 Identities=14% Similarity=0.135 Sum_probs=106.5
Q ss_pred ccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHH----------cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCC
Q 001261 470 HQTGLTSKIMETIRKLNYEKPMPIQAQALPVIM----------SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGD 539 (1112)
Q Consensus 470 ~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il----------~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~ 539 (1112)
-.+.|+..++.. ..++..|.+++-... .....++-..||.||.-+..-.|+.++...
T Consensus 24 y~~~lp~~~~~~------g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G------- 90 (303)
T PF13872_consen 24 YRLHLPEEVIDS------GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG------- 90 (303)
T ss_pred cccCCCHHHHhc------ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC-------
Confidence 345777766542 346788888876654 223466667899999987666677766542
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCccccc----
Q 001261 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNL---- 615 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l---- 615 (1112)
..++|.|..+..|.......+..+... .+.+..+..-. .. ....-...||++|+..|+...........-|
T Consensus 91 r~r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~~-~~---~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~ 165 (303)
T PF13872_consen 91 RKRAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKFK-YG---DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLV 165 (303)
T ss_pred CCceEEEECChhhhhHHHHHHHHhCCC-cccceechhhc-cC---cCCCCCCCccchhHHHHHhHHhccCCccchHHHHH
Confidence 235899999999999888888876543 33333332210 00 0011234699999998877653221111111
Q ss_pred -----CCceEEEeccchhhhccCCh--------hHHHHHHHhcCCCCcEEEEeccccHHHH
Q 001261 616 -----RRVTYLVMDEADRMFDMGFE--------PQITRIVQNIRPDRQTVLFSATFPRQVE 663 (1112)
Q Consensus 616 -----~~i~~vViDEah~~~~~gf~--------~~i~~il~~~~~~~q~il~SAT~~~~~~ 663 (1112)
+.=.+||+||||.+.+..-. ..+..+-..+ |+..+|.+|||.-....
T Consensus 166 ~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~L-P~ARvvY~SATgasep~ 225 (303)
T PF13872_consen 166 DWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRL-PNARVVYASATGASEPR 225 (303)
T ss_pred HHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhC-CCCcEEEecccccCCCc
Confidence 12258999999998765321 2333333445 45569999999754433
|
|
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Probab=97.89 E-value=4e-05 Score=80.87 Aligned_cols=124 Identities=18% Similarity=0.237 Sum_probs=73.1
Q ss_pred CChHHHHHHHHHHHcCC--CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhh
Q 001261 489 KPMPIQAQALPVIMSGR--DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKV 566 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~--dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~ 566 (1112)
++++-|..++..++... -+++.|+.|+|||.+ +..+...+.. .+..+++++||...+..+...
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~-------~g~~v~~~apT~~Aa~~L~~~------- 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEA-------AGKRVIGLAPTNKAAKELREK------- 65 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHH-------TT--EEEEESSHHHHHHHHHH-------
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHh-------CCCeEEEECCcHHHHHHHHHh-------
Confidence 36789999999997554 466779999999975 4445555544 357899999998887764443
Q ss_pred cCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcc----cccCCceEEEeccchhhhccCChhHHHHHH
Q 001261 567 MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKI----TNLRRVTYLVMDEADRMFDMGFEPQITRIV 642 (1112)
Q Consensus 567 ~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~----~~l~~i~~vViDEah~~~~~gf~~~i~~il 642 (1112)
.++.+ .|-..+ +....... ..+...++||||||-.+. ...+..++
T Consensus 66 ~~~~a------------------------~Ti~~~---l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll 114 (196)
T PF13604_consen 66 TGIEA------------------------QTIHSF---LYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLL 114 (196)
T ss_dssp HTS-E------------------------EEHHHH---TTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHH
T ss_pred hCcch------------------------hhHHHH---HhcCCcccccccccCCcccEEEEecccccC----HHHHHHHH
Confidence 12222 221111 11111000 014566799999999764 45667777
Q ss_pred HhcCC-CCcEEEEeccc
Q 001261 643 QNIRP-DRQTVLFSATF 658 (1112)
Q Consensus 643 ~~~~~-~~q~il~SAT~ 658 (1112)
..+.. +.++|++.-+.
T Consensus 115 ~~~~~~~~klilvGD~~ 131 (196)
T PF13604_consen 115 RLAKKSGAKLILVGDPN 131 (196)
T ss_dssp HHS-T-T-EEEEEE-TT
T ss_pred HHHHhcCCEEEEECCcc
Confidence 77766 56777776653
|
|
| >TIGR00376 DNA helicase, putative | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0006 Score=84.54 Aligned_cols=67 Identities=19% Similarity=0.197 Sum_probs=51.6
Q ss_pred CCChHHHHHHHHHHHcC-CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH
Q 001261 488 EKPMPIQAQALPVIMSG-RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g-~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~ 562 (1112)
..+.+.|..|+..++.. ..+||.||+|+|||.+....+. ++.. .|+++||++||...+.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~-~~~~-------~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIR-QLVK-------RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHH-HHHH-------cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 45789999999999877 5677889999999976444333 3332 256899999999998888777665
|
The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. |
| >PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00019 Score=75.92 Aligned_cols=154 Identities=20% Similarity=0.336 Sum_probs=96.3
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHc---CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEE
Q 001261 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMS---GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGL 544 (1112)
Q Consensus 468 ~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~---g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~L 544 (1112)
.|.....|..++=.+. .+ --.++.|.+.+..+++ |.+.+.+.-||.|||.+ ++||+..+..+ ....+.
T Consensus 4 ~w~p~~~P~wLl~E~e-~~-iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAd------g~~Lvr 74 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIE-SN-ILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALAD------GSRLVR 74 (229)
T ss_pred CCCchhChHHHHHHHH-cC-ceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcC------CCcEEE
Confidence 5666666666553332 22 3578999999999885 57899999999999976 77888776653 235677
Q ss_pred EEccchhHHHHHHHHHHHHhh-hcCceEEEE--eCCCChH----HHH----HHHhcCCeEEEeCchHHHHHHHhcC----
Q 001261 545 IMAPTRELVQQIHSDIRKFAK-VMGVRCVPV--YGGSGVA----QQI----SELKRGTEIVVCTPGRMIDILCTSG---- 609 (1112)
Q Consensus 545 Il~PtreLa~Q~~~~~~~~~~-~~~i~~~~~--~gg~~~~----~~~----~~l~~~~~IvV~Tp~~L~~~l~~~~---- 609 (1112)
++|| ..|..|.+..+...+. -++-.+..+ .-..... ..+ ......-.|+++||+.++.+....-
T Consensus 75 viVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~ 153 (229)
T PF12340_consen 75 VIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQ 153 (229)
T ss_pred EEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHH
Confidence 8888 5799999988876443 334333332 2222211 112 2223345799999998866543221
Q ss_pred -Ccc----------cccCCceEEEeccchhhhc
Q 001261 610 -GKI----------TNLRRVTYLVMDEADRMFD 631 (1112)
Q Consensus 610 -~~~----------~~l~~i~~vViDEah~~~~ 631 (1112)
+.. ..|...+.=|+||+|.++.
T Consensus 154 ~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 154 DGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred hcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 110 0133455678999997765
|
There are two conserved sequence motifs: LLE and NMG. |
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00024 Score=76.57 Aligned_cols=144 Identities=13% Similarity=0.107 Sum_probs=82.8
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHH----------
Q 001261 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQ---------- 554 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~---------- 554 (1112)
.++...+..|..++.++..+.-+++.|++|+|||+.++..++..+... .-.+++|.=|+.....
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~------~~~kIiI~RP~v~~ge~LGfLPG~~~ 128 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK------DVDRIIVTRPVLQADEDLGFLPGDIA 128 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC------CeeEEEEeCCCCCchhhhCcCCCCHH
Confidence 445567889999999999988888899999999998887777665442 1223444446543211
Q ss_pred -HHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHh--cCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhc
Q 001261 555 -QIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELK--RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD 631 (1112)
Q Consensus 555 -Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~--~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~ 631 (1112)
-+.-.+..+...+.. +.|. ..+..+. ....|.|+... ++.. ..|. -++||||||+.+.
T Consensus 129 eK~~p~~~pi~D~L~~----~~~~----~~~~~~~~~~~~~Iei~~l~----ymRG-----rtl~-~~~vIvDEaqn~~- 189 (262)
T PRK10536 129 EKFAPYFRPVYDVLVR----RLGA----SFMQYCLRPEIGKVEIAPFA----YMRG-----RTFE-NAVVILDEAQNVT- 189 (262)
T ss_pred HHHHHHHHHHHHHHHH----HhCh----HHHHHHHHhccCcEEEecHH----HhcC-----Cccc-CCEEEEechhcCC-
Confidence 111112222111111 1111 1122221 12345555533 2221 2333 3799999999864
Q ss_pred cCChhHHHHHHHhcCCCCcEEEEec
Q 001261 632 MGFEPQITRIVQNIRPDRQTVLFSA 656 (1112)
Q Consensus 632 ~gf~~~i~~il~~~~~~~q~il~SA 656 (1112)
..++..++..+..+.++|++.-
T Consensus 190 ---~~~~k~~ltR~g~~sk~v~~GD 211 (262)
T PRK10536 190 ---AAQMKMFLTRLGENVTVIVNGD 211 (262)
T ss_pred ---HHHHHHHHhhcCCCCEEEEeCC
Confidence 4678888888887777766543
|
|
| >PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A | Back alignment and domain information |
|---|
Probab=97.82 E-value=5.4e-05 Score=77.77 Aligned_cols=105 Identities=19% Similarity=0.274 Sum_probs=71.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCC--CeeeecCCCCHHHHHHHHHHhhcCCccEEEecC--cccccCCCCC--ccEEE
Q 001261 714 KGKILIFVHSQEKCDALFRDLLKHGY--PCLSLHGAKDQTDRESTISDFKSNVCNLLIATS--VAARGLDVKE--LELVI 787 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~g~--~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~--v~~~GlDi~~--v~~VI 787 (1112)
+|.+|||++|...++.+...|...+. .+.++.. .......+++.|+.+...||+|+. .+..|||+++ +.+||
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vi 86 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVI 86 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhheee
Confidence 58999999999999999999976531 1122222 245678899999999999999998 9999999997 88899
Q ss_pred EeCCCCC----Hh--------------------------HHHHHhcccCCCCCccEEEEEecC
Q 001261 788 NFDAPNH----YE--------------------------DYVHRVGRTGRAGRKGCAITFISE 820 (1112)
Q Consensus 788 ~~d~p~s----~~--------------------------~y~QriGR~gR~G~~g~~i~~~~~ 820 (1112)
...+|.. +. ...|.+||+-|....-.+++|+++
T Consensus 87 i~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 87 IVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp EES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 9888852 10 114889999998765445555543
|
|
| >KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00053 Score=80.26 Aligned_cols=83 Identities=23% Similarity=0.300 Sum_probs=64.9
Q ss_pred HHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHH
Q 001261 481 TIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDI 560 (1112)
Q Consensus 481 ~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~ 560 (1112)
.+...++.++..-|..|+..++...-.||+||.|+|||.+.. .++.|+..+ ....+|+++|+...+.|+...|
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa-~IVyhl~~~------~~~~VLvcApSNiAVDqLaeKI 474 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ------HAGPVLVCAPSNIAVDQLAEKI 474 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhH-HHHHHHHHh------cCCceEEEcccchhHHHHHHHH
Confidence 445577888899999999999999999999999999997644 444555443 2446899999999999888877
Q ss_pred HHHhhhcCceEEEE
Q 001261 561 RKFAKVMGVRCVPV 574 (1112)
Q Consensus 561 ~~~~~~~~i~~~~~ 574 (1112)
.+ .|++++-+
T Consensus 475 h~----tgLKVvRl 484 (935)
T KOG1802|consen 475 HK----TGLKVVRL 484 (935)
T ss_pred Hh----cCceEeee
Confidence 66 45666644
|
|
| >TIGR01447 recD exodeoxyribonuclease V, alpha subunit | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00039 Score=85.08 Aligned_cols=146 Identities=19% Similarity=0.236 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCce
Q 001261 491 MPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVR 570 (1112)
Q Consensus 491 t~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~ 570 (1112)
.+.|..|+..++.++-+|+.|+.|+|||++. ..++..+..... ...++.+++++||--.|..+.+.+......++..
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v-~~ll~~l~~~~~--~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~ 223 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTV-ARLLLALVKQSP--KQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA 223 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHH-HHHHHHHHHhcc--ccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc
Confidence 3799999999999999999999999999753 333333332211 0113578999999988887777665543222210
Q ss_pred EEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCC---cccccCCceEEEeccchhhhccCChhHHHHHHHhcCC
Q 001261 571 CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGG---KITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 647 (1112)
Q Consensus 571 ~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~---~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~ 647 (1112)
. .+.....+-..|-.+|+........ ...+...+++||||||=++- ...+..++..+++
T Consensus 224 ----------~----~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al~~ 285 (586)
T TIGR01447 224 ----------E----ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKALPP 285 (586)
T ss_pred ----------h----hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhcCC
Confidence 0 0011112224454444332211000 00123457899999998642 4567788888999
Q ss_pred CCcEEEEecc
Q 001261 648 DRQTVLFSAT 657 (1112)
Q Consensus 648 ~~q~il~SAT 657 (1112)
..++|++.-.
T Consensus 286 ~~rlIlvGD~ 295 (586)
T TIGR01447 286 NTKLILLGDK 295 (586)
T ss_pred CCEEEEECCh
Confidence 9988887665
|
This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. |
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00026 Score=82.04 Aligned_cols=107 Identities=16% Similarity=0.228 Sum_probs=65.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHH
Q 001261 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISE 586 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~ 586 (1112)
+||.|..|||||++++-.+. .+.. ...+..+++||+...|...++..+.....
T Consensus 4 ~~I~G~aGTGKTvla~~l~~-~l~~-----~~~~~~~~~l~~n~~l~~~l~~~l~~~~~--------------------- 56 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAK-ELQN-----SEEGKKVLYLCGNHPLRNKLREQLAKKYN--------------------- 56 (352)
T ss_pred EEEEecCCcCHHHHHHHHHH-Hhhc-----cccCCceEEEEecchHHHHHHHHHhhhcc---------------------
Confidence 67789999999987554433 3311 12467789999999998877777665320
Q ss_pred HhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccC-------ChhHHHHHHHh
Q 001261 587 LKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG-------FEPQITRIVQN 644 (1112)
Q Consensus 587 l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~g-------f~~~i~~il~~ 644 (1112)
.......+..+..++..+. ........+++|||||||+|...+ ...++..++..
T Consensus 57 -~~~~~~~~~~~~~~i~~~~---~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 57 -PKLKKSDFRKPTSFINNYS---ESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred -cchhhhhhhhhHHHHhhcc---cccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 0001223444444443332 011345678999999999998732 23455555554
|
It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation []. |
| >PRK10875 recD exonuclease V subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00052 Score=84.13 Aligned_cols=146 Identities=20% Similarity=0.254 Sum_probs=89.3
Q ss_pred ChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCc
Q 001261 490 PMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGV 569 (1112)
Q Consensus 490 pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i 569 (1112)
..+.|..|+-..+..+-+||.|++|+|||++. ..++..+.... .+....+++++||.-.|..+.+.+......+++
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v-~~ll~~l~~~~---~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~ 228 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTTV-AKLLAALIQLA---DGERCRIRLAAPTGKAAARLTESLGKALRQLPL 228 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH-HHHHHHHHHhc---CCCCcEEEEECCcHHHHHHHHHHHHhhhhcccc
Confidence 35899999999999999999999999999753 23333332211 112356888899999998887777654433321
Q ss_pred eEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcC---CcccccCCceEEEeccchhhhccCChhHHHHHHHhcC
Q 001261 570 RCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSG---GKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646 (1112)
Q Consensus 570 ~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~---~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~ 646 (1112)
. . .+......-..|-.+|+....... ....+.-.+++||||||-++ + ...+..++..++
T Consensus 229 ~-----------~---~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv-d---~~lm~~ll~al~ 290 (615)
T PRK10875 229 T-----------D---EQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV-D---LPMMARLIDALP 290 (615)
T ss_pred c-----------h---hhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc-c---HHHHHHHHHhcc
Confidence 1 0 000001112233333322211100 00112335689999999864 2 566778888999
Q ss_pred CCCcEEEEecc
Q 001261 647 PDRQTVLFSAT 657 (1112)
Q Consensus 647 ~~~q~il~SAT 657 (1112)
+..++|++.-.
T Consensus 291 ~~~rlIlvGD~ 301 (615)
T PRK10875 291 PHARVIFLGDR 301 (615)
T ss_pred cCCEEEEecch
Confidence 99988888765
|
|
| >KOG1803 consensus DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00026 Score=82.72 Aligned_cols=63 Identities=24% Similarity=0.260 Sum_probs=50.9
Q ss_pred CChHHHHHHHHHHHcCCC-EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHH
Q 001261 489 KPMPIQAQALPVIMSGRD-CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSD 559 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~d-vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~ 559 (1112)
.+.+-|..|+.+.++.++ .++.||+|+|||.+....+.+.+.. +.++||++||.+.+.-+.+.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~--------~k~VLVcaPSn~AVdNiver 248 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ--------KKRVLVCAPSNVAVDNIVER 248 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc--------CCeEEEEcCchHHHHHHHHH
Confidence 566889999999998876 4566999999998877766666554 57899999999888777664
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.003 Score=73.19 Aligned_cols=171 Identities=14% Similarity=0.108 Sum_probs=90.3
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc--cchhHHHHHHHHHHHHhhhcCceEEEEeCCCChH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVA 581 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~--PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~ 581 (1112)
...++++|+||+|||++..-.+....... ...+..+++++ +.|.-+.. .+..++..+++.+.+.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~----~~~g~~V~lit~Dt~R~aa~e---QL~~~a~~lgvpv~~~------- 239 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINS----DDKSLNIKIITIDNYRIGAKK---QIQTYGDIMGIPVKAI------- 239 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhh----ccCCCeEEEEeccCccHHHHH---HHHHHhhcCCcceEee-------
Confidence 35688899999999987654443322211 01234444444 44444442 3666666666654322
Q ss_pred HHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhcc-CChhHHHHHHHhcCCC-CcEEEEecccc
Q 001261 582 QQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDM-GFEPQITRIVQNIRPD-RQTVLFSATFP 659 (1112)
Q Consensus 582 ~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~-gf~~~i~~il~~~~~~-~q~il~SAT~~ 659 (1112)
.++..+...+. .+.++++||||++.++... .....+..++..+.+. .-++++|||..
T Consensus 240 --------------~~~~~l~~~L~-------~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~ 298 (388)
T PRK12723 240 --------------ESFKDLKEEIT-------QSKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK 298 (388)
T ss_pred --------------CcHHHHHHHHH-------HhCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC
Confidence 23334444432 2456899999999987521 1223455556655544 35688999986
Q ss_pred HH-HHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCH
Q 001261 660 RQ-VEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQ 724 (1112)
Q Consensus 660 ~~-~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~ 724 (1112)
.. +...+..|...++. .-++.-.++..+.-.++.++... +-++..++..+
T Consensus 299 ~~~~~~~~~~~~~~~~~-------------~~I~TKlDet~~~G~~l~~~~~~--~~Pi~yit~Gq 349 (388)
T PRK12723 299 TSDVKEIFHQFSPFSYK-------------TVIFTKLDETTCVGNLISLIYEM--RKEVSYVTDGQ 349 (388)
T ss_pred HHHHHHHHHHhcCCCCC-------------EEEEEeccCCCcchHHHHHHHHH--CCCEEEEeCCC
Confidence 43 44444444321110 01123344555666666666543 23454455444
|
|
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0011 Score=83.50 Aligned_cols=129 Identities=17% Similarity=0.161 Sum_probs=80.2
Q ss_pred CCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhc
Q 001261 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM 567 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~ 567 (1112)
..+++-|..|+..+..++-+++.|..|+|||++ +..++..+... +....+++++||-..|..+.+. .
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~-l~~i~~~~~~~-----~~~~~v~l~ApTg~AA~~L~e~-------~ 388 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTI-TRAIIELAEEL-----GGLLPVGLAAPTGRAAKRLGEV-------T 388 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHH-HHHHHHHHHHc-----CCCceEEEEeCchHHHHHHHHh-------c
Confidence 468999999999999989999999999999974 33444443331 1114678889998877644322 2
Q ss_pred CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhc--CCcccccCCceEEEeccchhhhccCChhHHHHHHHhc
Q 001261 568 GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTS--GGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI 645 (1112)
Q Consensus 568 ~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~--~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~ 645 (1112)
|+.. .|..+|+.+.... .....+....++||||||+++. ...+..++..+
T Consensus 389 g~~a------------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd----~~~~~~Ll~~~ 440 (720)
T TIGR01448 389 GLTA------------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMD----TWLALSLLAAL 440 (720)
T ss_pred CCcc------------------------ccHHHHhhccCCccchhhhhccccCCEEEEeccccCC----HHHHHHHHHhC
Confidence 2211 1111111110000 0000122357899999999753 34567778888
Q ss_pred CCCCcEEEEecc
Q 001261 646 RPDRQTVLFSAT 657 (1112)
Q Consensus 646 ~~~~q~il~SAT 657 (1112)
+...++|++.-+
T Consensus 441 ~~~~rlilvGD~ 452 (720)
T TIGR01448 441 PDHARLLLVGDT 452 (720)
T ss_pred CCCCEEEEECcc
Confidence 888888887665
|
This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. |
| >COG3421 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0011 Score=76.96 Aligned_cols=146 Identities=18% Similarity=0.172 Sum_probs=71.3
Q ss_pred EEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHH-HHhhhcCceEEEEeCCCChHH----H
Q 001261 509 GVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIR-KFAKVMGVRCVPVYGGSGVAQ----Q 583 (1112)
Q Consensus 509 i~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~-~~~~~~~i~~~~~~gg~~~~~----~ 583 (1112)
+.+.||||||+++...+|..... |.. ..|+.|..-....-....+. .+...+-+.-...++|..+.- .
T Consensus 2 f~matgsgkt~~ma~lil~~y~k------gyr-~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~ 74 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKK------GYR-NFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNN 74 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHh------chh-hEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecc
Confidence 45789999999876666654332 222 34555554333332211111 111111111112223322110 1
Q ss_pred HHHHhcCCeEEEeCchHHHHHHHhcCCcc---cccCCce-EEEeccchhhhccC------------ChhHHHHHHHhcCC
Q 001261 584 ISELKRGTEIVVCTPGRMIDILCTSGGKI---TNLRRVT-YLVMDEADRMFDMG------------FEPQITRIVQNIRP 647 (1112)
Q Consensus 584 ~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~---~~l~~i~-~vViDEah~~~~~g------------f~~~i~~il~~~~~ 647 (1112)
+.....+..|+++|...|...+.+..... .+|.+.. +++-||||++-... -+..+..+-..-++
T Consensus 75 fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nk 154 (812)
T COG3421 75 FSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNK 154 (812)
T ss_pred cCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCC
Confidence 11223467899999998876665433222 2344444 45679999973211 11111111122245
Q ss_pred CCcEEEEeccccHH
Q 001261 648 DRQTVLFSATFPRQ 661 (1112)
Q Consensus 648 ~~q~il~SAT~~~~ 661 (1112)
+.-++.||||+|..
T Consensus 155 d~~~lef~at~~k~ 168 (812)
T COG3421 155 DNLLLEFSATIPKE 168 (812)
T ss_pred CceeehhhhcCCcc
Confidence 55678899999843
|
|
| >KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00081 Score=81.67 Aligned_cols=41 Identities=22% Similarity=0.399 Sum_probs=31.7
Q ss_pred CChHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHH
Q 001261 489 KPMPIQAQALPVIM----SGRDCIGVAKTGSGKTLAFVLPMLRHI 529 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il----~g~dvii~a~TGsGKT~~~llp~l~~l 529 (1112)
+|+|.|...+.-++ ...+.++.+|||+|||++.|-..|...
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~ 65 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQ 65 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHH
Confidence 57899987766655 567899999999999998776655443
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0033 Score=66.19 Aligned_cols=170 Identities=19% Similarity=0.172 Sum_probs=93.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc--cchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH
Q 001261 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI 584 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~--PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~ 584 (1112)
++++||||+|||++..-.+...... +.++.+++ ..|.=|. ++++.++..+++.+.............
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~--------~~~v~lis~D~~R~ga~---eQL~~~a~~l~vp~~~~~~~~~~~~~~ 72 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK--------GKKVALISADTYRIGAV---EQLKTYAEILGVPFYVARTESDPAEIA 72 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT--------T--EEEEEESTSSTHHH---HHHHHHHHHHTEEEEESSTTSCHHHHH
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc--------cccceeecCCCCCccHH---HHHHHHHHHhccccchhhcchhhHHHH
Confidence 6789999999998755544443322 33444544 3443333 667788888888776544333222111
Q ss_pred HHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhh-ccCChhHHHHHHHhcCCCCcEEEEeccccHHHH
Q 001261 585 SELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF-DMGFEPQITRIVQNIRPDRQTVLFSATFPRQVE 663 (1112)
Q Consensus 585 ~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~-~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~ 663 (1112)
...+.. ...+++++|+||=+-+.. +......+..++..+.+..-++++|||......
T Consensus 73 -----------------~~~l~~-----~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~ 130 (196)
T PF00448_consen 73 -----------------REALEK-----FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDL 130 (196)
T ss_dssp -----------------HHHHHH-----HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHH
T ss_pred -----------------HHHHHH-----HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHH
Confidence 112211 122346788888876542 222355677777788777778999999876654
Q ss_pred HHHHHhcC-C-CeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHH
Q 001261 664 ILARKVLN-K-PVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQE 725 (1112)
Q Consensus 664 ~l~~~~~~-~-p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~ 725 (1112)
..+..+.. - +-.+ ++...++..+.-.++.++... +-++-.+++.+.
T Consensus 131 ~~~~~~~~~~~~~~l--------------IlTKlDet~~~G~~l~~~~~~--~~Pi~~it~Gq~ 178 (196)
T PF00448_consen 131 EQALAFYEAFGIDGL--------------ILTKLDETARLGALLSLAYES--GLPISYITTGQR 178 (196)
T ss_dssp HHHHHHHHHSSTCEE--------------EEESTTSSSTTHHHHHHHHHH--TSEEEEEESSSS
T ss_pred HHHHHHhhcccCceE--------------EEEeecCCCCcccceeHHHHh--CCCeEEEECCCC
Confidence 34433332 1 1111 123345556666777776653 345555555443
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0078 Score=68.65 Aligned_cols=173 Identities=19% Similarity=0.230 Sum_probs=95.4
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQ 582 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~ 582 (1112)
.++-+.++||||.|||++..-.+....+. .+....+||-+-|--.+. ++.++.++..+++.+..++
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~-----~~~~kVaiITtDtYRIGA--~EQLk~Ya~im~vp~~vv~------- 267 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVML-----KKKKKVAIITTDTYRIGA--VEQLKTYADIMGVPLEVVY------- 267 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhh-----ccCcceEEEEeccchhhH--HHHHHHHHHHhCCceEEec-------
Confidence 47889999999999998655444444311 122345566665433322 3667788888887665444
Q ss_pred HHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhh-ccCChhHHHHHHHhcCCCCcEEEEeccccHH
Q 001261 583 QISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF-DMGFEPQITRIVQNIRPDRQTVLFSATFPRQ 661 (1112)
Q Consensus 583 ~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~-~~gf~~~i~~il~~~~~~~q~il~SAT~~~~ 661 (1112)
+|.-|...+ ..|.++++|.||=+-+-. |.....++..++....+..-.+++|||....
T Consensus 268 --------------~~~el~~ai-------~~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~ 326 (407)
T COG1419 268 --------------SPKELAEAI-------EALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYE 326 (407)
T ss_pred --------------CHHHHHHHH-------HHhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchH
Confidence 444444444 245556666666665422 2223445555555555555678899997643
Q ss_pred -HHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHH
Q 001261 662 -VEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQE 725 (1112)
Q Consensus 662 -~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~ 725 (1112)
+......|-.-|+.- -++.-.++...+-.++.++... +-++..|.+.+.
T Consensus 327 dlkei~~~f~~~~i~~-------------~I~TKlDET~s~G~~~s~~~e~--~~PV~YvT~GQ~ 376 (407)
T COG1419 327 DLKEIIKQFSLFPIDG-------------LIFTKLDETTSLGNLFSLMYET--RLPVSYVTNGQR 376 (407)
T ss_pred HHHHHHHHhccCCcce-------------eEEEcccccCchhHHHHHHHHh--CCCeEEEeCCCC
Confidence 455555554443211 1122234444455556655542 335555555544
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.012 Score=67.41 Aligned_cols=169 Identities=15% Similarity=0.204 Sum_probs=88.2
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc--cchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHH
Q 001261 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQ 582 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~--PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~ 582 (1112)
+.++++|+||+|||+.....+.. +.. .+..++++. |.|.-+. ..+..++..+++.+.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~-L~~-------~GkkVglI~aDt~RiaAv---EQLk~yae~lgipv~---------- 300 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQ-FHG-------KKKTVGFITTDHSRIGTV---QQLQDYVKTIGFEVI---------- 300 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHH-HHH-------cCCcEEEEecCCcchHHH---HHHHHHhhhcCCcEE----------
Confidence 56788999999999865544443 222 244454444 3342222 234444444444332
Q ss_pred HHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhcc-CChhHHHHHHHhcCCCCcEEEEecccc-H
Q 001261 583 QISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDM-GFEPQITRIVQNIRPDRQTVLFSATFP-R 660 (1112)
Q Consensus 583 ~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~-gf~~~i~~il~~~~~~~q~il~SAT~~-~ 660 (1112)
++.+|..|.+.+... ....++++|+||-+=+.... .....+..++....++.-++++|||.. .
T Consensus 301 -----------v~~d~~~L~~aL~~l----k~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~ 365 (436)
T PRK11889 301 -----------AVRDEAAMTRALTYF----KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK 365 (436)
T ss_pred -----------ecCCHHHHHHHHHHH----HhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChH
Confidence 234566665555321 11124788999988764421 123345555555556655677999765 4
Q ss_pred HHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCH
Q 001261 661 QVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQ 724 (1112)
Q Consensus 661 ~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~ 724 (1112)
.+..++..|-..++.- -++.-.+...+.-.++.++... +-++..++..+
T Consensus 366 d~~~i~~~F~~~~idg-------------lI~TKLDET~k~G~iLni~~~~--~lPIsyit~GQ 414 (436)
T PRK11889 366 DMIEIITNFKDIHIDG-------------IVFTKFDETASSGELLKIPAVS--SAPIVLMTDGQ 414 (436)
T ss_pred HHHHHHHHhcCCCCCE-------------EEEEcccCCCCccHHHHHHHHH--CcCEEEEeCCC
Confidence 5566666654322110 1122334455556666666553 33555555443
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.014 Score=69.03 Aligned_cols=130 Identities=20% Similarity=0.235 Sum_probs=69.9
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHH-hcCCCCCCCCCCcEEEEc--cchhHHHHHHHHHHHHhhhcCceEEEEeCCCC
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHI-KDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSG 579 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l-~~~~~~~~~~~~~~LIl~--PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~ 579 (1112)
.++.++++||||+|||++.+..+.... .. .+..+++|. |.+.-+. ..+..++..+++.+..
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~-------~g~~V~li~~D~~r~~a~---eqL~~~a~~~~vp~~~------ 283 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLY-------GKKKVALITLDTYRIGAV---EQLKTYAKIMGIPVEV------ 283 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc-------CCCeEEEEECCccHHHHH---HHHHHHHHHhCCceEc------
Confidence 356788899999999986554444332 22 133444443 3333222 4455555545544322
Q ss_pred hHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhh-ccCChhHHHHHHH-hcCCCCcEEEEecc
Q 001261 580 VAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF-DMGFEPQITRIVQ-NIRPDRQTVLFSAT 657 (1112)
Q Consensus 580 ~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~-~~gf~~~i~~il~-~~~~~~q~il~SAT 657 (1112)
+.++..|...+. .+..+++||||-+-+.. +......+..++. ...+..-.+++|||
T Consensus 284 ---------------~~~~~~l~~~l~-------~~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~ 341 (424)
T PRK05703 284 ---------------VYDPKELAKALE-------QLRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSAT 341 (424)
T ss_pred ---------------cCCHHhHHHHHH-------HhCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECC
Confidence 234444444442 23457899999886532 1112334555555 22344557889998
Q ss_pred ccH-HHHHHHHHhc
Q 001261 658 FPR-QVEILARKVL 670 (1112)
Q Consensus 658 ~~~-~~~~l~~~~~ 670 (1112)
... .+..++..|-
T Consensus 342 ~~~~~l~~~~~~f~ 355 (424)
T PRK05703 342 TKYEDLKDIYKHFS 355 (424)
T ss_pred CCHHHHHHHHHHhC
Confidence 764 4455555543
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0023 Score=73.47 Aligned_cols=177 Identities=19% Similarity=0.189 Sum_probs=86.7
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQ 582 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~ 582 (1112)
.|..++++||||+|||+.....+...+... +. .++.+++ +...-.--.+.+..|+..+++.+..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~-----G~-~~V~lit-~D~~R~ga~EqL~~~a~~~gv~~~~--------- 199 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRF-----GA-SKVALLT-TDSYRIGGHEQLRIFGKILGVPVHA--------- 199 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc-----CC-CeEEEEe-cccccccHHHHHHHHHHHcCCceEe---------
Confidence 466788999999999987665554443321 11 2333333 2222111224556666666654433
Q ss_pred HHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhc-cCChhHHHHHHHhcCCCCcEEEEeccccHH
Q 001261 583 QISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQ 661 (1112)
Q Consensus 583 ~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~-~gf~~~i~~il~~~~~~~q~il~SAT~~~~ 661 (1112)
+.+++.+...+. .+.+.++|+||.+-+... ......+..+.....+...++++|||....
T Consensus 200 ------------~~~~~~l~~~l~-------~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~ 260 (374)
T PRK14722 200 ------------VKDGGDLQLALA-------ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGD 260 (374)
T ss_pred ------------cCCcccHHHHHH-------HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChH
Confidence 333433433332 345568888998875421 112222333222223344578899998554
Q ss_pred H-HHHHHHhcCC---CeEEEEcCcccccCCccE-EEEecccchhHHHHHHHHHhhhcCCeEEEEeCCH
Q 001261 662 V-EILARKVLNK---PVEIQVGGRSVVNKDITQ-LVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQ 724 (1112)
Q Consensus 662 ~-~~l~~~~~~~---p~~i~i~~~~~~~~~i~q-~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~ 724 (1112)
. ...+..|... |.... ..+.. ++...++..++-.++.++... +-++..+++.+
T Consensus 261 ~l~evi~~f~~~~~~p~~~~--------~~~~~~I~TKlDEt~~~G~~l~~~~~~--~lPi~yvt~Gq 318 (374)
T PRK14722 261 TLNEVVQAYRSAAGQPKAAL--------PDLAGCILTKLDEASNLGGVLDTVIRY--KLPVHYVSTGQ 318 (374)
T ss_pred HHHHHHHHHHHhhccccccc--------CCCCEEEEeccccCCCccHHHHHHHHH--CcCeEEEecCC
Confidence 3 4444444322 11000 01111 223344555666666666553 33555555444
|
|
| >KOG1805 consensus DNA replication helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0025 Score=78.15 Aligned_cols=145 Identities=21% Similarity=0.259 Sum_probs=88.2
Q ss_pred CCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCC-EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCC
Q 001261 463 PKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRD-CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGP 541 (1112)
Q Consensus 463 p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~d-vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~ 541 (1112)
|+.+.......+.+.+... -+..+...|.+|+-.++..+| .||.|-+|+|||+.... ++..|.. .|.
T Consensus 647 pP~f~~~~~~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~-LIkiL~~-------~gk 714 (1100)
T KOG1805|consen 647 PPKFVDALSKVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISL-LIKILVA-------LGK 714 (1100)
T ss_pred CchhhcccccccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHH-HHHHHHH-------cCC
Confidence 4444444455566666663 223456899999999988776 67779999999975433 3333322 367
Q ss_pred cEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHH-----------------HHHHhcCCeEEEeCchHHHHH
Q 001261 542 VGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ-----------------ISELKRGTEIVVCTPGRMIDI 604 (1112)
Q Consensus 542 ~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~-----------------~~~l~~~~~IvV~Tp~~L~~~ 604 (1112)
+||+.+=|...+..+.-.+.. +++.+.-+-.+.....+ +..+...+.||.||=-.+.+.
T Consensus 715 kVLLtsyThsAVDNILiKL~~----~~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~p 790 (1100)
T KOG1805|consen 715 KVLLTSYTHSAVDNILIKLKG----FGIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHP 790 (1100)
T ss_pred eEEEEehhhHHHHHHHHHHhc----cCcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCch
Confidence 888888887665544333333 34443332222222222 233344578888885444333
Q ss_pred HHhcCCcccccCCceEEEeccchhhh
Q 001261 605 LCTSGGKITNLRRVTYLVMDEADRMF 630 (1112)
Q Consensus 605 l~~~~~~~~~l~~i~~vViDEah~~~ 630 (1112)
| +..+.++|+|||||-.|+
T Consensus 791 l-------f~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 791 L-------FVNRQFDYCIIDEASQIL 809 (1100)
T ss_pred h-------hhccccCEEEEccccccc
Confidence 3 456779999999999775
|
|
| >PRK13889 conjugal transfer relaxase TraA; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0035 Score=80.36 Aligned_cols=124 Identities=20% Similarity=0.132 Sum_probs=77.4
Q ss_pred CCChHHHHHHHHHHHcCCC-EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhh
Q 001261 488 EKPMPIQAQALPVIMSGRD-CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKV 566 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~d-vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~ 566 (1112)
..+++-|.+||..++.+.+ ++++|..|+|||++ +-.++..+.. .|..+++++||--.|..+.. .
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~-------~G~~V~~~ApTGkAA~~L~e-------~ 409 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA-------AGYEVRGAALSGIAAENLEG-------G 409 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH-------cCCeEEEecCcHHHHHHHhh-------c
Confidence 3689999999999998765 67789999999975 4444444332 36788999999766654321 1
Q ss_pred cCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhc-
Q 001261 567 MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI- 645 (1112)
Q Consensus 567 ~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~- 645 (1112)
.|+.. .|..+|+.-... ....+...++||||||-.+. ...+..++...
T Consensus 410 tGi~a------------------------~TI~sll~~~~~---~~~~l~~~~vlIVDEASMv~----~~~m~~LL~~a~ 458 (988)
T PRK13889 410 SGIAS------------------------RTIASLEHGWGQ---GRDLLTSRDVLVIDEAGMVG----TRQLERVLSHAA 458 (988)
T ss_pred cCcch------------------------hhHHHHHhhhcc---cccccccCcEEEEECcccCC----HHHHHHHHHhhh
Confidence 22211 121122110101 11245667899999999653 33455566544
Q ss_pred CCCCcEEEEecc
Q 001261 646 RPDRQTVLFSAT 657 (1112)
Q Consensus 646 ~~~~q~il~SAT 657 (1112)
....++||+.-+
T Consensus 459 ~~garvVLVGD~ 470 (988)
T PRK13889 459 DAGAKVVLVGDP 470 (988)
T ss_pred hCCCEEEEECCH
Confidence 556778887766
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.006 Score=69.43 Aligned_cols=132 Identities=23% Similarity=0.275 Sum_probs=76.3
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEcc-c-hh-HHHHHHHHHHHHhhhcCceEEEEeCCCChH
Q 001261 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP-T-RE-LVQQIHSDIRKFAKVMGVRCVPVYGGSGVA 581 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~P-t-re-La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~ 581 (1112)
.-++++|++|+|||++....+ ..+.. .+..++++.. | |. ...| +..++..+++.+.....|....
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA-~~l~~-------~g~~V~li~~Dt~R~~a~eq----L~~~a~~lgv~v~~~~~g~dp~ 208 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLA-YYLKK-------NGFSVVIAAGDTFRAGAIEQ----LEEHAERLGVKVIKHKYGADPA 208 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHH-HHHHH-------cCCeEEEecCCcCcHHHHHH----HHHHHHHcCCceecccCCCCHH
Confidence 357778999999998544333 23332 2445555542 2 23 3334 3445555666654333232211
Q ss_pred HHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhh-ccCChhHHHHHHHhcCCCCcEEEEeccccH
Q 001261 582 QQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF-DMGFEPQITRIVQNIRPDRQTVLFSATFPR 660 (1112)
Q Consensus 582 ~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~-~~gf~~~i~~il~~~~~~~q~il~SAT~~~ 660 (1112)
.. +.+.+.. .....+++||||.|.++. +..+...+..+...+.++.-+++++||...
T Consensus 209 ~v-----------------~~~ai~~-----~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~ 266 (336)
T PRK14974 209 AV-----------------AYDAIEH-----AKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN 266 (336)
T ss_pred HH-----------------HHHHHHH-----HHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch
Confidence 11 1111111 112346799999999875 344667777787778888888999999876
Q ss_pred HHHHHHHHhc
Q 001261 661 QVEILARKVL 670 (1112)
Q Consensus 661 ~~~~l~~~~~ 670 (1112)
.....+..|.
T Consensus 267 d~~~~a~~f~ 276 (336)
T PRK14974 267 DAVEQAREFN 276 (336)
T ss_pred hHHHHHHHHH
Confidence 6655555554
|
|
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0024 Score=56.05 Aligned_cols=55 Identities=20% Similarity=0.389 Sum_probs=38.3
Q ss_pred HcCCC-EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHH
Q 001261 502 MSGRD-CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDI 560 (1112)
Q Consensus 502 l~g~d-vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~ 560 (1112)
+.+.. ++|.|+.|||||...+-.+...+.... .. +..+||++||+.++..+.+.+
T Consensus 7 l~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~---~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 7 LAGSPLFVVQGPPGTGKTTTLAARIAELLAARA---DP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhc---CC-CCeEEEECCCHHHHHHHHHHH
Confidence 33444 556999999999765655555543211 12 668999999999999877766
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0033 Score=61.47 Aligned_cols=22 Identities=27% Similarity=0.134 Sum_probs=13.9
Q ss_pred CCCEEEEcCCCChHHHHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~ 525 (1112)
++-+++.|++|+|||.+.-..+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~ 25 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLA 25 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHH
Confidence 4568899999999997544333
|
|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0091 Score=65.92 Aligned_cols=110 Identities=15% Similarity=0.154 Sum_probs=61.0
Q ss_pred HHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCC
Q 001261 500 VIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSG 579 (1112)
Q Consensus 500 ~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~ 579 (1112)
++-.+.+++++|++|+|||..+...+ ..+.. .|..|+++ +..+|+.++......
T Consensus 102 ~~~~~~nlll~Gp~GtGKTHLa~Aia-~~a~~-------~g~~v~f~-~~~~L~~~l~~a~~~----------------- 155 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSHLAAAIG-LALIE-------NGWRVLFT-RTTDLVQKLQVARRE----------------- 155 (269)
T ss_pred HHhcCceEEEEecCCCcHHHHHHHHH-HHHHH-------cCCceeee-eHHHHHHHHHHHHhC-----------------
Confidence 45578899999999999996544333 23322 24445444 445565544221000
Q ss_pred hHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCC-hhHHHHHHHhcCCCCcEEEEeccc
Q 001261 580 VAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGF-EPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 580 ~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf-~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
.+...++. .+..+.+|||||.+.+....+ ...+..|+........+|+.|-..
T Consensus 156 ----------------~~~~~~l~----------~l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 156 ----------------LQLESAIA----------KLDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred ----------------CcHHHHHH----------HHhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 01111211 234578999999997543222 234566666554445667666665
Q ss_pred cHH
Q 001261 659 PRQ 661 (1112)
Q Consensus 659 ~~~ 661 (1112)
+..
T Consensus 210 ~~~ 212 (269)
T PRK08181 210 FGE 212 (269)
T ss_pred HHH
Confidence 554
|
|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0043 Score=68.12 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=22.4
Q ss_pred HHHHHcCCCEEEEcCCCChHHHHHHHHHHH
Q 001261 498 LPVIMSGRDCIGVAKTGSGKTLAFVLPMLR 527 (1112)
Q Consensus 498 i~~il~g~dvii~a~TGsGKT~~~llp~l~ 527 (1112)
..++..+.+++++||+|+|||..+...+..
T Consensus 92 ~~fi~~~~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 92 LDFVTGKENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred CchhhcCceEEEEeCCCCchHHHHHHHHHH
Confidence 345567789999999999999765544433
|
|
| >KOG0383 consensus Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.98 E-value=5.3e-05 Score=91.66 Aligned_cols=77 Identities=25% Similarity=0.357 Sum_probs=62.9
Q ss_pred hHHHHHHHHHhhhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhh---cCCccEEEecCccc
Q 001261 700 RFLRLLELLGEWYEK-GKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFK---SNVCNLLIATSVAA 775 (1112)
Q Consensus 700 k~~~ll~~l~~~~~~-~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~---~g~~~VLVaT~v~~ 775 (1112)
|+..|...+...... .+||||...+...+.|..++...+ ....+.|......|..++..|. ...+.+|++|...+
T Consensus 616 k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g 694 (696)
T KOG0383|consen 616 KLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGG 694 (696)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeeccccc
Confidence 455555555555443 499999999999999999998888 8889999999999999999998 33577899998776
Q ss_pred cc
Q 001261 776 RG 777 (1112)
Q Consensus 776 ~G 777 (1112)
.|
T Consensus 695 ~g 696 (696)
T KOG0383|consen 695 LG 696 (696)
T ss_pred CC
Confidence 55
|
|
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0017 Score=68.13 Aligned_cols=110 Identities=15% Similarity=0.173 Sum_probs=59.4
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccc---hhHHHHHHHHHHHHhhhcCceEEEEeCCCCh
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT---RELVQQIHSDIRKFAKVMGVRCVPVYGGSGV 580 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Pt---reLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~ 580 (1112)
|.-.|+.|++|+|||+.++-.+.+... .+.+++|+-|. +.... .++..+|+.+..
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~--------~g~~v~i~k~~~d~~~~~~-------~i~~~lg~~~~~------- 59 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEE--------RGMKVLVFKPAIDDRYGEG-------KVVSRIGLSREA------- 59 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHH--------cCCeEEEEeccccccccCC-------cEecCCCCcccc-------
Confidence 344688999999999876655554432 25678888663 22111 112222221110
Q ss_pred HHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEecc
Q 001261 581 AQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSAT 657 (1112)
Q Consensus 581 ~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT 657 (1112)
+.+..+..++..+.. .-..+.+|||||+|.+. ..++..++..+.+....|++++-
T Consensus 60 ------------~~~~~~~~~~~~~~~------~~~~~dvviIDEaq~l~----~~~v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 60 ------------IPVSSDTDIFELIEE------EGEKIDCVLIDEAQFLD----KEQVVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred ------------eEeCChHHHHHHHHh------hCCCCCEEEEEccccCC----HHHHHHHHHHHHHcCCeEEEEec
Confidence 122344444444432 12357899999998642 23466666665544445555554
|
|
| >PRK13826 Dtr system oriT relaxase; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.085 Score=68.46 Aligned_cols=124 Identities=19% Similarity=0.178 Sum_probs=78.1
Q ss_pred CCChHHHHHHHHHHHc-CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhh
Q 001261 488 EKPMPIQAQALPVIMS-GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKV 566 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~-g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~ 566 (1112)
..+++-|.+|+..+.. ++-++++|.-|+|||++ +-++...+.. .|..++.++||--.|..+.+ .
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~e~-------~G~~V~g~ApTgkAA~~L~e-------~ 444 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAWEA-------AGYRVVGGALAGKAAEGLEK-------E 444 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHHHH-------cCCeEEEEcCcHHHHHHHHH-------h
Confidence 4689999999998865 45678889999999975 4444444332 36788999999766654322 2
Q ss_pred cCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcC
Q 001261 567 MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646 (1112)
Q Consensus 567 ~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~ 646 (1112)
.|+....+ .+|+ +....+ ...|...++||||||-.+. ..++..++..+.
T Consensus 445 ~Gi~a~TI------------------------as~l--l~~~~~-~~~l~~~~vlVIDEAsMv~----~~~m~~Ll~~~~ 493 (1102)
T PRK13826 445 AGIQSRTL------------------------SSWE--LRWNQG-RDQLDNKTVFVLDEAGMVA----SRQMALFVEAVT 493 (1102)
T ss_pred hCCCeeeH------------------------HHHH--hhhccC-ccCCCCCcEEEEECcccCC----HHHHHHHHHHHH
Confidence 34433221 1111 000011 1245667899999999653 345556666664
Q ss_pred -CCCcEEEEecc
Q 001261 647 -PDRQTVLFSAT 657 (1112)
Q Consensus 647 -~~~q~il~SAT 657 (1112)
...++||+.-+
T Consensus 494 ~~garvVLVGD~ 505 (1102)
T PRK13826 494 RAGAKLVLVGDP 505 (1102)
T ss_pred hcCCEEEEECCH
Confidence 56788888766
|
|
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.01 Score=75.14 Aligned_cols=124 Identities=16% Similarity=0.148 Sum_probs=74.8
Q ss_pred CCChHHHHHHHHHHHcC-CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhh
Q 001261 488 EKPMPIQAQALPVIMSG-RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKV 566 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g-~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~ 566 (1112)
..+++-|..|+..++.+ +-++|+|+.|+|||++ +-.++..+.. .|..+++++||--.|..+.. .
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl-l~~i~~~~~~-------~g~~V~~~ApTg~Aa~~L~~-------~ 415 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM-LKAAREAWEA-------AGYRVIGAALSGKAAEGLQA-------E 415 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH-HHHHHHHHHh-------CCCeEEEEeCcHHHHHHHHh-------c
Confidence 35889999999999875 5678889999999965 3334433332 26678999999776654432 1
Q ss_pred cCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHh-c
Q 001261 567 MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQN-I 645 (1112)
Q Consensus 567 ~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~-~ 645 (1112)
.|+... |-.+++..+.. ....+...++||||||-.+.. ..+..++.. .
T Consensus 416 ~g~~a~------------------------Ti~~~~~~~~~---~~~~~~~~~llIvDEasMv~~----~~~~~Ll~~~~ 464 (744)
T TIGR02768 416 SGIESR------------------------TLASLEYAWAN---GRDLLSDKDVLVIDEAGMVGS----RQMARVLKEAE 464 (744)
T ss_pred cCCcee------------------------eHHHHHhhhcc---CcccCCCCcEEEEECcccCCH----HHHHHHHHHHH
Confidence 233221 11111110111 112356789999999997542 234455553 3
Q ss_pred CCCCcEEEEecc
Q 001261 646 RPDRQTVLFSAT 657 (1112)
Q Consensus 646 ~~~~q~il~SAT 657 (1112)
....++||+.-+
T Consensus 465 ~~~~kliLVGD~ 476 (744)
T TIGR02768 465 EAGAKVVLVGDP 476 (744)
T ss_pred hcCCEEEEECCh
Confidence 356677777644
|
This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer. |
| >COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.015 Score=64.58 Aligned_cols=162 Identities=15% Similarity=0.158 Sum_probs=92.6
Q ss_pred CCCCCChHHHHHHHHHHHcCC--CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHH-------
Q 001261 485 LNYEKPMPIQAQALPVIMSGR--DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQ------- 555 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~--dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q------- 555 (1112)
+|+..-...|.-|+.+++.-. -|.+.|+-|||||+.++.+.+..++.++. -.+++|.=|+..+...
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~-----y~KiiVtRp~vpvG~dIGfLPG~ 298 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKR-----YRKIIVTRPTVPVGEDIGFLPGT 298 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhh-----hceEEEecCCcCcccccCcCCCc
Confidence 677777788999999998664 46677999999999999998888776532 2344444466544321
Q ss_pred ----HHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccC-------CceEEEec
Q 001261 556 ----IHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLR-------RVTYLVMD 624 (1112)
Q Consensus 556 ----~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~-------~i~~vViD 624 (1112)
+.-+++.++..+ ..|.. .-=|+.+.|..++......+..|. .=.|||||
T Consensus 299 eEeKm~PWmq~i~DnL-----------------E~L~~---~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIID 358 (436)
T COG1875 299 EEEKMGPWMQAIFDNL-----------------EVLFS---PNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIID 358 (436)
T ss_pred hhhhccchHHHHHhHH-----------------HHHhc---ccccchHHHHHHHhccceeeeeeeeecccccccceEEEe
Confidence 111222221111 11111 001112222222222211111111 12589999
Q ss_pred cchhhhccCChhHHHHHHHhcCCCCcEEEEeccc----------cHHHHHHHHHhcCCCeE
Q 001261 625 EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF----------PRQVEILARKVLNKPVE 675 (1112)
Q Consensus 625 Eah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~----------~~~~~~l~~~~~~~p~~ 675 (1112)
||+.+. ..+++.|+.....+..+|++.--- .+.+..++.+|.+.|..
T Consensus 359 EaQNLT----pheikTiltR~G~GsKIVl~gd~aQiD~~yl~~~snGLtyvverfk~~~l~ 415 (436)
T COG1875 359 EAQNLT----PHELKTILTRAGEGSKIVLTGDPAQIDTPYLDETSNGLTYVVEKFKGHPLS 415 (436)
T ss_pred hhhccC----HHHHHHHHHhccCCCEEEEcCCHHHcCCccccCCCccHHHHHHHhcCCCce
Confidence 999864 567889999998888887765431 23455566666666644
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.1 Score=62.15 Aligned_cols=169 Identities=15% Similarity=0.179 Sum_probs=80.7
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc--cchhHHHHHHHHHHHHhhhcCceEEEEeCCCCh
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGV 580 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~--PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~ 580 (1112)
.|..++++|+||+|||+.+...+...... +.+..+.++. +.+..+. ..+..+...+++.+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~------~~gkkVaLIdtDtyRigA~---EQLk~ya~iLgv~v~~------- 412 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQ------HAPRDVALVTTDTQRVGGR---EQLHSYGRQLGIAVHE------- 412 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh------cCCCceEEEecccccccHH---HHHHHhhcccCceeEe-------
Confidence 46678889999999998654443333222 1122344433 2343332 2333444334443221
Q ss_pred HHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhc-cCChhHHHHHHHhcCCCCcEEEEecccc
Q 001261 581 AQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFP 659 (1112)
Q Consensus 581 ~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~-~gf~~~i~~il~~~~~~~q~il~SAT~~ 659 (1112)
+.++..|...+. .+.++++||||.+-++.. ......+..+. ......-+|+++++..
T Consensus 413 --------------a~d~~~L~~aL~-------~l~~~DLVLIDTaG~s~~D~~l~eeL~~L~-aa~~~a~lLVLpAtss 470 (559)
T PRK12727 413 --------------ADSAESLLDLLE-------RLRDYKLVLIDTAGMGQRDRALAAQLNWLR-AARQVTSLLVLPANAH 470 (559)
T ss_pred --------------cCcHHHHHHHHH-------HhccCCEEEecCCCcchhhHHHHHHHHHHH-HhhcCCcEEEEECCCC
Confidence 123344444443 234578999999876421 11112222222 2234455778888865
Q ss_pred H-HHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCH
Q 001261 660 R-QVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQ 724 (1112)
Q Consensus 660 ~-~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~ 724 (1112)
. .+..++..|...+.. .-++...++..++-.++.++... +-++..+++++
T Consensus 471 ~~Dl~eii~~f~~~~~~-------------gvILTKlDEt~~lG~aLsv~~~~--~LPI~yvt~GQ 521 (559)
T PRK12727 471 FSDLDEVVRRFAHAKPQ-------------GVVLTKLDETGRFGSALSVVVDH--QMPITWVTDGQ 521 (559)
T ss_pred hhHHHHHHHHHHhhCCe-------------EEEEecCcCccchhHHHHHHHHh--CCCEEEEeCCC
Confidence 3 444454444321110 01122234455566666666543 23555555544
|
|
| >cd02395 SF1_like-KH Splicing factor 1 (SF1) K homology RNA-binding domain (KH) | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0049 Score=58.98 Aligned_cols=69 Identities=20% Similarity=0.194 Sum_probs=53.1
Q ss_pred cchhhcccchhhhhHHhhhCCeEecccee--eCCCCC-----CC--CCCCceEEEEEeCC--HHHHHHHHHHHHHHHHHH
Q 001261 1025 NARWKVTHKETLGPISEWTGAAITTRGQY--FPPSRI-----AG--PGERKLYLFIEGPT--EQSVKRAKAELKRVLEDF 1093 (1112)
Q Consensus 1025 ~~R~~~t~~~~~~~i~~~tg~~i~~kG~~--~~~~~~-----~~--~~~~~Lyl~ie~~~--~~~v~~A~~~i~~~~~e~ 1093 (1112)
.-+-.=..+.|+.+|++.|||.|.++|.- ...++. |. ..+-+||++|+|++ ..++++|+..|+.|+...
T Consensus 17 IG~IIGPgG~tiK~i~~eTg~kI~Irg~gs~~~~~~~~~~~~~~~~~~~eplhV~I~a~~~~~e~~~~A~~~I~~ll~~~ 96 (120)
T cd02395 17 VGLILGPRGNTLKQLEKETGAKISIRGKGSMKDGKKEEELRGPKYAHLNEPLHVLITAETPPEEALAKAVEAIEELLKPA 96 (120)
T ss_pred eEEEECCCChHHHHHHHHHCCEEEEecCcccccccccccccCcccccCCCCcEEEEEeCCcHHHHHHHHHHHHHHHhccC
Confidence 34455578999999999999999999862 111111 11 13568999999999 999999999999999844
|
Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 defines an enlarged KH (hnRNP K) fold which is necessary and sufficient for BPS binding. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. |
| >PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0064 Score=69.10 Aligned_cols=125 Identities=16% Similarity=0.110 Sum_probs=77.1
Q ss_pred ChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCc
Q 001261 490 PMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGV 569 (1112)
Q Consensus 490 pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i 569 (1112)
+|+-|.++|.. ....++|.|..|||||.+.+.-++..+.... .....+|+|++|+..|..+...+...+.....
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~----~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~ 74 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG----VPPERILVLTFTNAAAQEMRERIRELLEEEQQ 74 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS----STGGGEEEEESSHHHHHHHHHHHHHHHHHCCH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc----CChHHheecccCHHHHHHHHHHHHHhcCcccc
Confidence 46889998888 6778999999999999988777776665532 23457999999999999999988887654321
Q ss_pred eEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccch
Q 001261 570 RCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD 627 (1112)
Q Consensus 570 ~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah 627 (1112)
.. .........+..-..+.|+|-..+...+.........+ .-.+-|+|+..
T Consensus 75 ~~------~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~-~~~~~i~~~~~ 125 (315)
T PF00580_consen 75 ES------SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGI-DPNFEILDEEE 125 (315)
T ss_dssp CC------TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTS-HTTTEEECHHH
T ss_pred cc------cccccccccccccchheeehhhhhhhhhhhhhhhhhhc-cccceeecchh
Confidence 10 00001111222235678889887765443322111111 12356677776
|
THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A .... |
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.11 Score=72.49 Aligned_cols=210 Identities=11% Similarity=0.083 Sum_probs=115.1
Q ss_pred CChHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhh
Q 001261 489 KPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKV 566 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g--~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~ 566 (1112)
.+++-|.+|+..++.. +-+||.|..|+|||.+ +-.++..+.. .|..+++++||-..+..+.+.+
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~~~-------~G~~V~~lAPTgrAA~~L~e~~------ 494 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLASE-------QGYEIQIITAGSLSAQELRQKI------ 494 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHHHh-------cCCeEEEEeCCHHHHHHHHHHh------
Confidence 5789999999999875 5678889999999964 4444444332 3678999999987766554432
Q ss_pred cCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhc-
Q 001261 567 MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI- 645 (1112)
Q Consensus 567 ~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~- 645 (1112)
++... .....+..+..+ ....|...|+ . ....|...++||||||-.+. ...+..++...
T Consensus 495 -g~~A~------Ti~~~l~~l~~~--~~~~tv~~fl---~----~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a~ 554 (1960)
T TIGR02760 495 -PRLAS------TFITWVKNLFND--DQDHTVQGLL---D----KSSPFSNKDIFVVDEANKLS----NNELLKLIDKAE 554 (1960)
T ss_pred -cchhh------hHHHHHHhhccc--ccchhHHHhh---c----ccCCCCCCCEEEEECCCCCC----HHHHHHHHHHHh
Confidence 21110 111111111111 1122323332 1 11345667899999999653 44566677655
Q ss_pred CCCCcEEEEecc--ccH----HHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhc-CCeEE
Q 001261 646 RPDRQTVLFSAT--FPR----QVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE-KGKIL 718 (1112)
Q Consensus 646 ~~~~q~il~SAT--~~~----~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~-~~~vL 718 (1112)
..+.++||+.-+ +|. .+..++... +-|.. .+.........+ .+.......++..+...+..... ...++
T Consensus 555 ~~garvVlvGD~~QL~sV~aG~~f~~L~~~-gv~t~-~l~~i~rq~~~v--~i~~~~~~~r~~~ia~~y~~L~~~r~~tl 630 (1960)
T TIGR02760 555 QHNSKLILLNDSAQRQGMSAGSAIDLLKEG-GVTTY-AWVDTKQQKASV--EISEAVDKLRVDYIASAWLDLTPDRQNSQ 630 (1960)
T ss_pred hcCCEEEEEcChhhcCccccchHHHHHHHC-CCcEE-EeecccccCcce--eeeccCchHHHHHHHHHHHhcccccCceE
Confidence 467889988776 221 333333332 22221 111110001111 12222233444455554444333 33689
Q ss_pred EEeCCHHHHHHHHHHHHh
Q 001261 719 IFVHSQEKCDALFRDLLK 736 (1112)
Q Consensus 719 IF~~s~~~~~~l~~~L~~ 736 (1112)
||..+..+...|...++.
T Consensus 631 iv~~t~~dr~~Ln~~iR~ 648 (1960)
T TIGR02760 631 VLATTHREQQDLTQIIRN 648 (1960)
T ss_pred EEcCCcHHHHHHHHHHHH
Confidence 999998888777766643
|
This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein. |
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.051 Score=62.12 Aligned_cols=25 Identities=28% Similarity=0.218 Sum_probs=18.6
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLR 527 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~ 527 (1112)
.++.++++||+|+|||+...-.+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~ 229 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ 229 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567888999999999865554443
|
|
| >PF13871 Helicase_C_4: Helicase_C-like | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0071 Score=66.24 Aligned_cols=79 Identities=14% Similarity=0.350 Sum_probs=60.0
Q ss_pred HHHHHhhcCCccEEEecCcccccCCCCC--------ccEEEEeCCCCCHhHHHHHhcccCCCCCc-cEEEEEecCC---c
Q 001261 755 STISDFKSNVCNLLIATSVAARGLDVKE--------LELVINFDAPNHYEDYVHRVGRTGRAGRK-GCAITFISEE---D 822 (1112)
Q Consensus 755 ~~~~~F~~g~~~VLVaT~v~~~GlDi~~--------v~~VI~~d~p~s~~~y~QriGR~gR~G~~-g~~i~~~~~~---d 822 (1112)
...+.|.+|...|+|.|+.++.||.+.. -.+-|.+.+||+....+|.+||+.|.|+. ...|.|+... +
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 5567999999999999999999998763 45567789999999999999999999974 4456655432 3
Q ss_pred cCchHHHHHHH
Q 001261 823 AKYSPDLVKAL 833 (1112)
Q Consensus 823 ~~~~~~i~~~l 833 (1112)
..++..+.+.|
T Consensus 132 ~Rfas~va~rL 142 (278)
T PF13871_consen 132 RRFASTVARRL 142 (278)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
|
|
| >smart00492 HELICc3 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.021 Score=56.69 Aligned_cols=77 Identities=19% Similarity=0.216 Sum_probs=54.3
Q ss_pred eecCCCCHHHHHHHHHHhhcCC-ccEEEecCcccccCCCCC--ccEEEEeCCCCC----H--------------------
Q 001261 743 SLHGAKDQTDRESTISDFKSNV-CNLLIATSVAARGLDVKE--LELVINFDAPNH----Y-------------------- 795 (1112)
Q Consensus 743 ~ihg~~~~~~R~~~~~~F~~g~-~~VLVaT~v~~~GlDi~~--v~~VI~~d~p~s----~-------------------- 795 (1112)
++.-+....+...+++.|+... ..||++|.-++.|||+++ +.+||...+|.. +
T Consensus 26 i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~ 105 (141)
T smart00492 26 LLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDF 105 (141)
T ss_pred EEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhH
Confidence 3444455556788999998654 379999988999999998 678888887641 1
Q ss_pred -------hHHHHHhcccCCCCCccEEEEEec
Q 001261 796 -------EDYVHRVGRTGRAGRKGCAITFIS 819 (1112)
Q Consensus 796 -------~~y~QriGR~gR~G~~g~~i~~~~ 819 (1112)
....|.+||+-|....-.+++|++
T Consensus 106 ~~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D 136 (141)
T smart00492 106 VSLPDAMRTLAQCVGRLIRGANDYGVVVIAD 136 (141)
T ss_pred HHHHHHHHHHHHHhCccccCcCceEEEEEEe
Confidence 122488899999765433454554
|
|
| >PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0086 Score=69.68 Aligned_cols=59 Identities=19% Similarity=0.224 Sum_probs=42.6
Q ss_pred ChHHHHHHHHHH------HcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHH
Q 001261 490 PMPIQAQALPVI------MSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQI 556 (1112)
Q Consensus 490 pt~iQ~~ai~~i------l~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~ 556 (1112)
+++-|..++..+ ..+..+++.|+-|+|||.. +-.+..... ..+..+++++||-..|..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l--~~~i~~~~~------~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFL--IKAIIDYLR------SRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHH--HHHHHHHhc------cccceEEEecchHHHHHhc
Confidence 567889888888 5778899999999999964 323322222 1367889999998776644
|
The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ]. |
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.022 Score=56.15 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=18.4
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHI 529 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l 529 (1112)
+..+++.|++|+|||.. +..++..+
T Consensus 19 ~~~v~i~G~~G~GKT~l-~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL-ARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHh
Confidence 67899999999999963 44444443
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.054 Score=63.39 Aligned_cols=173 Identities=17% Similarity=0.172 Sum_probs=85.7
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQ 582 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~ 582 (1112)
.|.-+.++|+||+|||+.+...+...+... +....++|.+.+.-.+ ....+..++..+|+.+..+....
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~-----~~~~v~~i~~d~~rig--alEQL~~~a~ilGvp~~~v~~~~---- 258 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRH-----GADKVALLTTDSYRIG--GHEQLRIYGKLLGVSVRSIKDIA---- 258 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc-----CCCeEEEEecCCcchh--HHHHHHHHHHHcCCceecCCCHH----
Confidence 466688899999999986654443333221 1123456666653332 23445666666676554333222
Q ss_pred HHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhc-cCChhHHHHHHHhcCCCCcEEEEeccccHH
Q 001261 583 QISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQ 661 (1112)
Q Consensus 583 ~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~-~gf~~~i~~il~~~~~~~q~il~SAT~~~~ 661 (1112)
.+...+ ..+....+|+||.+=+.-. ......+..+.....+..-++++|||....
T Consensus 259 -----------------dl~~al-------~~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~ 314 (420)
T PRK14721 259 -----------------DLQLML-------HELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGD 314 (420)
T ss_pred -----------------HHHHHH-------HHhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHH
Confidence 222122 1234456667776532110 001122222222223445578899997544
Q ss_pred -HHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHH
Q 001261 662 -VEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQE 725 (1112)
Q Consensus 662 -~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~ 725 (1112)
+...+..|-..++. .-++...++..+.-.++.++... +-++..+++.+.
T Consensus 315 ~~~~~~~~f~~~~~~-------------~~I~TKlDEt~~~G~~l~~~~~~--~lPi~yvt~Gq~ 364 (420)
T PRK14721 315 TLDEVISAYQGHGIH-------------GCIITKVDEAASLGIALDAVIRR--KLVLHYVTNGQK 364 (420)
T ss_pred HHHHHHHHhcCCCCC-------------EEEEEeeeCCCCccHHHHHHHHh--CCCEEEEECCCC
Confidence 55555555432211 01123345556666677776653 345656665554
|
|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.058 Score=61.45 Aligned_cols=48 Identities=8% Similarity=0.176 Sum_probs=29.1
Q ss_pred cCCceEEEeccchhhhccCC-hhHHHHHHHhcCC-CCcEEEEeccccHHH
Q 001261 615 LRRVTYLVMDEADRMFDMGF-EPQITRIVQNIRP-DRQTVLFSATFPRQV 662 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~gf-~~~i~~il~~~~~-~~q~il~SAT~~~~~ 662 (1112)
+..+++||||+.+......| ...+..|+..... ...+|+.|-..|..+
T Consensus 244 l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el 293 (329)
T PRK06835 244 LINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEEL 293 (329)
T ss_pred hccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHH
Confidence 44678999999986543332 2345555555433 456766666655554
|
|
| >PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0076 Score=65.23 Aligned_cols=86 Identities=20% Similarity=0.341 Sum_probs=63.8
Q ss_pred CCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCC-ChHHHHHHHhc-CCeEEEeCchHHHHHHHhcCCcccccC
Q 001261 539 DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGS-GVAQQISELKR-GTEIVVCTPGRMIDILCTSGGKITNLR 616 (1112)
Q Consensus 539 ~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~-~~~~~~~~l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l~ 616 (1112)
..|.+||||..---|..+...+..|.. -+..++-++.-. ...+|+..|.. .+.|.||||+||..++..+. +.++
T Consensus 125 gsP~~lvvs~SalRa~dl~R~l~~~~~-k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~---L~l~ 200 (252)
T PF14617_consen 125 GSPHVLVVSSSALRAADLIRALRSFKG-KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGA---LSLS 200 (252)
T ss_pred CCCEEEEEcchHHHHHHHHHHHHhhcc-CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCC---CCcc
Confidence 478999999987777777777766531 123444445443 67788888875 57999999999999997654 5788
Q ss_pred CceEEEeccchh
Q 001261 617 RVTYLVMDEADR 628 (1112)
Q Consensus 617 ~i~~vViDEah~ 628 (1112)
++.+||||=-|.
T Consensus 201 ~l~~ivlD~s~~ 212 (252)
T PF14617_consen 201 NLKRIVLDWSYL 212 (252)
T ss_pred cCeEEEEcCCcc
Confidence 999999998763
|
|
| >KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.012 Score=74.25 Aligned_cols=155 Identities=17% Similarity=0.166 Sum_probs=91.5
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCC----------CCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEE
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPP----------VAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCV 572 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~----------~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~ 572 (1112)
.|.++++...+|+|||..-+...+.++-..-+ .......-+|||||. ++..||+.+|.+-+... +++.
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~ 450 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVL 450 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEE
Confidence 56778999999999998776665544221110 001123467999996 56799999999876643 5544
Q ss_pred EEeCCCChHH-HHHHHhcCCeEEEeCchHHHHHHHhc--CCcccc-------------cCCce--EEEeccchhhhccCC
Q 001261 573 PVYGGSGVAQ-QISELKRGTEIVVCTPGRMIDILCTS--GGKITN-------------LRRVT--YLVMDEADRMFDMGF 634 (1112)
Q Consensus 573 ~~~gg~~~~~-~~~~l~~~~~IvV~Tp~~L~~~l~~~--~~~~~~-------------l~~i~--~vViDEah~~~~~gf 634 (1112)
+|-|..... ......-.+||||+|+..|..-+... .+..-. |-.+. -|+||||+.+-. .
T Consensus 451 -~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--s 527 (1394)
T KOG0298|consen 451 -LYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--S 527 (1394)
T ss_pred -EEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--h
Confidence 444432111 11111234899999999997666432 111111 11222 289999996543 3
Q ss_pred hhHHHHHHHhcCCCCcEEEEeccccHHHH
Q 001261 635 EPQITRIVQNIRPDRQTVLFSATFPRQVE 663 (1112)
Q Consensus 635 ~~~i~~il~~~~~~~q~il~SAT~~~~~~ 663 (1112)
......++..++ ....-++|+|+-..+.
T Consensus 528 sS~~a~M~~rL~-~in~W~VTGTPiq~Id 555 (1394)
T KOG0298|consen 528 SSAAAEMVRRLH-AINRWCVTGTPIQKID 555 (1394)
T ss_pred HHHHHHHHHHhh-hhceeeecCCchhhhh
Confidence 444555555543 3346788999754443
|
|
| >KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.27 Score=58.98 Aligned_cols=187 Identities=14% Similarity=0.219 Sum_probs=108.3
Q ss_pred ceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcC-CCeEEE--EcCcccccC--------
Q 001261 618 VTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLN-KPVEIQ--VGGRSVVNK-------- 686 (1112)
Q Consensus 618 i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~-~p~~i~--i~~~~~~~~-------- 686 (1112)
+.|+.+|-|.++. .++.. .+-+|+..+||.|-- .|...++. -|..+. .-...+++.
T Consensus 527 lky~lL~pA~~f~---------evv~e---aravvLAGGTMeP~~-e~~e~L~~~~~~~i~~fsc~Hvip~e~il~~vv~ 593 (821)
T KOG1133|consen 527 LKYMLLNPAKHFA---------EVVLE---ARAVVLAGGTMEPVD-ELREQLFPGCPERISPFSCSHVIPPENILPLVVS 593 (821)
T ss_pred EEEEecCcHHHHH---------HHHHH---hheeeecCCccccHH-HHHHHhcccchhhccceecccccChhheeeeeec
Confidence 5788888887632 22222 234888899987643 33333332 111000 000111111
Q ss_pred ------CccEEEEecccchhHHHHHHHHHhhhc--CCeEEEEeCCHHHHHHHHHHHHhcCC-------CeeeecCCCCHH
Q 001261 687 ------DITQLVEVRPESDRFLRLLELLGEWYE--KGKILIFVHSQEKCDALFRDLLKHGY-------PCLSLHGAKDQT 751 (1112)
Q Consensus 687 ------~i~q~~~~~~~~~k~~~ll~~l~~~~~--~~~vLIF~~s~~~~~~l~~~L~~~g~-------~~~~ihg~~~~~ 751 (1112)
.+.-.+.......-+..|-..+..+.. +|.|++|+++......+.+.+...|+ +-+++-...+
T Consensus 594 ~gpsg~p~eftf~~R~s~~~l~~l~~~~~nL~~~VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~-- 671 (821)
T KOG1133|consen 594 SGPSGQPLEFTFETRESPEMIKDLGSSISNLSNAVPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT-- 671 (821)
T ss_pred cCCCCCceEEEeeccCChHHHHHHHHHHHHHHhhCCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc--
Confidence 222223333333444444444443322 48899999999999999999887653 2333333333
Q ss_pred HHHHHHHHhh----cCCccEEEec--CcccccCCCCC--ccEEEEeCCCCC-----------------------------
Q 001261 752 DRESTISDFK----SNVCNLLIAT--SVAARGLDVKE--LELVINFDAPNH----------------------------- 794 (1112)
Q Consensus 752 ~R~~~~~~F~----~g~~~VLVaT--~v~~~GlDi~~--v~~VI~~d~p~s----------------------------- 794 (1112)
-..++..|. .|.-.||+|. .-++.|||+.+ ..+||..++|..
T Consensus 672 -~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yE 750 (821)
T KOG1133|consen 672 -VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYE 750 (821)
T ss_pred -HHHHHHHHHHHhhcCCCeEEEEEeccccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHH
Confidence 345666665 4555677665 67889999987 788888888752
Q ss_pred ---HhHHHHHhcccCCCCCccEEEEEecC
Q 001261 795 ---YEDYVHRVGRTGRAGRKGCAITFISE 820 (1112)
Q Consensus 795 ---~~~y~QriGR~gR~G~~g~~i~~~~~ 820 (1112)
+-...|-||||-|.-+.--+|+|++.
T Consensus 751 nlCMkAVNQsIGRAIRH~~DYA~i~LlD~ 779 (821)
T KOG1133|consen 751 NLCMKAVNQSIGRAIRHRKDYASIYLLDK 779 (821)
T ss_pred HHHHHHHHHHHHHHHhhhccceeEEEehh
Confidence 01235999999998766666666654
|
|
| >KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.008 Score=68.43 Aligned_cols=64 Identities=22% Similarity=0.282 Sum_probs=52.0
Q ss_pred ccchhhhhHHhhhCCeEeccce-eeCCCCC------CCC-CCCceEEEEEeCCHHHHHHHHHHHHHHHHHHH
Q 001261 1031 THKETLGPISEWTGAAITTRGQ-YFPPSRI------AGP-GERKLYLFIEGPTEQSVKRAKAELKRVLEDFT 1094 (1112)
Q Consensus 1031 t~~~~~~~i~~~tg~~i~~kG~-~~~~~~~------~~~-~~~~Lyl~ie~~~~~~v~~A~~~i~~~~~e~~ 1094 (1112)
..+.||..+...|||-|.+||+ -+-.|+. ..+ -+-+||.+|.+.|++.|++|++.|+.||.+++
T Consensus 161 PRG~TqK~lE~etgAKI~IRGkgSvkEgk~~~~d~~~~~~~~epLH~~Isadt~eki~~Ai~vienli~~av 232 (554)
T KOG0119|consen 161 PRGNTQKRLERETGAKIAIRGKGSVKEGKGRSDDLSYIPKENEPLHCLISADTQEKIKKAIAVIENLIQSAV 232 (554)
T ss_pred CCccHHHHHHHHhCCeEEEeccccccccccCCcccccccccccceeEEEecchHHHHHHHHHHHHHHHHhhc
Confidence 5789999999999999999994 2233331 112 35789999999999999999999999999854
|
|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.085 Score=58.54 Aligned_cols=48 Identities=13% Similarity=0.200 Sum_probs=29.1
Q ss_pred cCCceEEEeccchh--hhccCChhHHHHHHHhc-CCCCcEEEEeccccHHHH
Q 001261 615 LRRVTYLVMDEADR--MFDMGFEPQITRIVQNI-RPDRQTVLFSATFPRQVE 663 (1112)
Q Consensus 615 l~~i~~vViDEah~--~~~~gf~~~i~~il~~~-~~~~q~il~SAT~~~~~~ 663 (1112)
+..+++||||+++. ..++ ....+..|+... .....+|+.|-..|..+.
T Consensus 176 l~~~dlLviDDlg~e~~t~~-~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~ 226 (268)
T PRK08116 176 LVNADLLILDDLGAERDTEW-AREKVYNIIDSRYRKGLPTIVTTNLSLEELK 226 (268)
T ss_pred hcCCCEEEEecccCCCCCHH-HHHHHHHHHHHHHHCCCCEEEECCCCHHHHH
Confidence 44578999999963 2222 233455566554 345667777777666543
|
|
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.072 Score=59.00 Aligned_cols=45 Identities=20% Similarity=0.189 Sum_probs=26.9
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQ 555 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q 555 (1112)
.+..+++.|++|+|||..+ ..+...+... .|..|+++ +...|..+
T Consensus 116 ~~~~l~l~G~~G~GKThLa-~aia~~l~~~------~g~~v~y~-~~~~l~~~ 160 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLL-TAAANELMRK------KGVPVLYF-PFVEGFGD 160 (266)
T ss_pred CCCeEEEECCCCCcHHHHH-HHHHHHHhhh------cCceEEEE-EHHHHHHH
Confidence 3577999999999999643 3344444331 14455555 44444443
|
|
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.13 Score=56.90 Aligned_cols=170 Identities=16% Similarity=0.225 Sum_probs=89.2
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc-cc-h-hHHHHHHHHHHHHhhhcCceEEEEeCCCC
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA-PT-R-ELVQQIHSDIRKFAKVMGVRCVPVYGGSG 579 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~-Pt-r-eLa~Q~~~~~~~~~~~~~i~~~~~~gg~~ 579 (1112)
.+..++++|++|+|||+.+.+.+... .. .+..+.++. -+ + ..+.|| ..++..+++.+...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l-~~-------~~~~v~~i~~D~~ri~~~~ql----~~~~~~~~~~~~~~----- 136 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQF-HG-------KKKTVGFITTDHSRIGTVQQL----QDYVKTIGFEVIAV----- 136 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHH-HH-------cCCeEEEEecCCCCHHHHHHH----HHHhhhcCceEEec-----
Confidence 44678889999999998666544332 21 133444443 22 2 333443 34444444433221
Q ss_pred hHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhh-ccCChhHHHHHHHhcCCCCcEEEEeccc
Q 001261 580 VAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF-DMGFEPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 580 ~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~-~~gf~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
.++..|...+..- .....+++||||-+=++. +......+..++....++.-++++|||.
T Consensus 137 ----------------~~~~~l~~~l~~l----~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~ 196 (270)
T PRK06731 137 ----------------RDEAAMTRALTYF----KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASM 196 (270)
T ss_pred ----------------CCHHHHHHHHHHH----HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCcc
Confidence 2444444443211 122357899999987653 2223344556666666665577799986
Q ss_pred c-HHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCH
Q 001261 659 P-RQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQ 724 (1112)
Q Consensus 659 ~-~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~ 724 (1112)
. ..+...+..|-.-++. .-++.-.++..+.-.++.++... +-++..++..+
T Consensus 197 ~~~d~~~~~~~f~~~~~~-------------~~I~TKlDet~~~G~~l~~~~~~--~~Pi~~it~Gq 248 (270)
T PRK06731 197 KSKDMIEIITNFKDIHID-------------GIVFTKFDETASSGELLKIPAVS--SAPIVLMTDGQ 248 (270)
T ss_pred CHHHHHHHHHHhCCCCCC-------------EEEEEeecCCCCccHHHHHHHHH--CcCEEEEeCCC
Confidence 4 4666666666432210 01122344455666666666553 33555555443
|
|
| >TIGR01073 pcrA ATP-dependent DNA helicase PcrA | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.25 Score=63.11 Aligned_cols=72 Identities=19% Similarity=0.190 Sum_probs=54.0
Q ss_pred CCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001261 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
..++|-|.+++.. ....++|.|..|||||.+.+.-+...+.... . ....+|+|+-|+..|..+...+..++.
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~-i---~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKN-V---APWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCC-C---CHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 3578999998875 3567999999999999987766666554321 1 124689999999999988888876654
|
Designed to identify pcrA members of the uvrD/rep subfamily. |
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.046 Score=68.09 Aligned_cols=129 Identities=18% Similarity=0.196 Sum_probs=65.9
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCC-CcEEEEc-cchhHHHHHHHHHHHHhhhcCceEEEEeCCCChH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDG-PVGLIMA-PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVA 581 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~-~~~LIl~-PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~ 581 (1112)
+.-++++|+||+|||+++...+...... .| .++.++. -|--.+ ..+.++.++..+++.+..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~-------~G~kkV~lit~Dt~Rig--A~eQL~~~a~~~gvpv~~-------- 247 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAR-------EGADQLALLTTDSFRIG--ALEQLRIYGRILGVPVHA-------- 247 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHH-------cCCCeEEEecCcccchH--HHHHHHHHHHhCCCCccc--------
Confidence 4567889999999998765544433222 12 2343433 332111 124556666666654432
Q ss_pred HHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhc-cCChhHHHHHHHhcCCCCcEEEEeccccH
Q 001261 582 QQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPR 660 (1112)
Q Consensus 582 ~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~-~gf~~~i~~il~~~~~~~q~il~SAT~~~ 660 (1112)
+.+|..|.+.+. .+..+++|+||=+=++.. ......+..+.....+..-++++|||...
T Consensus 248 -------------~~~~~~l~~al~-------~~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~ 307 (767)
T PRK14723 248 -------------VKDAADLRFALA-------ALGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHG 307 (767)
T ss_pred -------------cCCHHHHHHHHH-------HhcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcH
Confidence 234554444442 233456777776665431 11222333333344455667888888753
Q ss_pred H-HHHHHHHh
Q 001261 661 Q-VEILARKV 669 (1112)
Q Consensus 661 ~-~~~l~~~~ 669 (1112)
. +..++..|
T Consensus 308 ~~l~~i~~~f 317 (767)
T PRK14723 308 DTLNEVVHAY 317 (767)
T ss_pred HHHHHHHHHH
Confidence 3 34444444
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.12 Score=61.48 Aligned_cols=64 Identities=23% Similarity=0.320 Sum_probs=34.7
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEE
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVP 573 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~ 573 (1112)
.|.-++++|+||+|||++....+....... +....+||-+-+--++ ..+.+..|+..+++.+..
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~-----G~~kV~LI~~Dt~Rig--A~EQLr~~AeilGVpv~~ 318 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRH-----GASKVALLTTDSYRIG--GHEQLRIYGKILGVPVHA 318 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhc-----CCCeEEEEeCCccchh--HHHHHHHHHHHhCCCeec
Confidence 355678899999999987655444332221 1112334443332122 235566666666665543
|
|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.063 Score=58.47 Aligned_cols=48 Identities=25% Similarity=0.339 Sum_probs=29.7
Q ss_pred cCCceEEEeccchhhhccCChh-HHHHHHHhcC-CCCcEEEEeccccHHH
Q 001261 615 LRRVTYLVMDEADRMFDMGFEP-QITRIVQNIR-PDRQTVLFSATFPRQV 662 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~gf~~-~i~~il~~~~-~~~q~il~SAT~~~~~ 662 (1112)
+..+++||||+++......|.. .+..|+.... ....+|++|---+..+
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l 209 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEM 209 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHH
Confidence 3468899999999765444443 3444555443 3466777776655444
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.067 Score=63.18 Aligned_cols=130 Identities=19% Similarity=0.228 Sum_probs=68.6
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc-cc-hhHHHHHHHHHHHHhhhcCceEEEEeCCCChHH
Q 001261 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA-PT-RELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQ 582 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~-Pt-reLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~ 582 (1112)
..++++|++|+|||++....+. ++.. .|..+++++ .+ |..+ +..+..++..+++.+..........
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~-~L~~-------~g~kV~lV~~D~~R~aa---~eQL~~la~~~gvp~~~~~~~~d~~- 163 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLAR-YFKK-------KGLKVGLVAADTYRPAA---YDQLKQLAEKIGVPFYGDPDNKDAV- 163 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHH-HHHH-------cCCeEEEecCCCCCHHH---HHHHHHHHHHcCCcEEecCCccCHH-
Confidence 4578889999999986554443 3332 134455444 32 3322 3445555555555432211111100
Q ss_pred HHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhh-ccCChhHHHHHHHhcCCCCcEEEEeccccHH
Q 001261 583 QISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF-DMGFEPQITRIVQNIRPDRQTVLFSATFPRQ 661 (1112)
Q Consensus 583 ~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~-~~gf~~~i~~il~~~~~~~q~il~SAT~~~~ 661 (1112)
..+.+.+.. +..+++||||.+-++. +......+..+...+.++.-+++++||....
T Consensus 164 ----------------~i~~~al~~-------~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~ 220 (437)
T PRK00771 164 ----------------EIAKEGLEK-------FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQ 220 (437)
T ss_pred ----------------HHHHHHHHH-------hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHH
Confidence 011222221 2234789999996542 1223344556666667777788889987655
Q ss_pred HHHHHHHh
Q 001261 662 VEILARKV 669 (1112)
Q Consensus 662 ~~~l~~~~ 669 (1112)
....+..|
T Consensus 221 av~~a~~F 228 (437)
T PRK00771 221 AKNQAKAF 228 (437)
T ss_pred HHHHHHHH
Confidence 54444443
|
|
| >TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.024 Score=66.97 Aligned_cols=145 Identities=14% Similarity=0.258 Sum_probs=85.0
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchh-HHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH
Q 001261 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRE-LVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI 584 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptre-La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~ 584 (1112)
-.++.|..|||||.+.++-++..+... ..+..+||+-||.. |..-++..+...+..+|+....-....+. .+
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~-----~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~i 75 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN-----KKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--EI 75 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc-----CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--EE
Confidence 357889999999999888888777764 12466788888877 66667788887777766542221111110 11
Q ss_pred HHHhc-CCeEEEeCc-hHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCC--CCcEEEEeccccH
Q 001261 585 SELKR-GTEIVVCTP-GRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP--DRQTVLFSATFPR 660 (1112)
Q Consensus 585 ~~l~~-~~~IvV~Tp-~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~--~~q~il~SAT~~~ 660 (1112)
. +.. |..|++..- .... ++.....+.+++||||..+.. ..+..++..++. ....|++|.||+.
T Consensus 76 ~-~~~~g~~i~f~g~~d~~~--------~ik~~~~~~~~~idEa~~~~~----~~~~~l~~rlr~~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 76 K-ILNTGKKFIFKGLNDKPN--------KLKSGAGIAIIWFEEASQLTF----EDIKELIPRLRETGGKKFIIFSSNPES 142 (396)
T ss_pred E-ecCCCeEEEeecccCChh--------HhhCcceeeeehhhhhhhcCH----HHHHHHHHHhhccCCccEEEEEcCcCC
Confidence 1 112 455666543 2111 112334478999999998743 244444444442 2224888999865
Q ss_pred HHHHHHHHhc
Q 001261 661 QVEILARKVL 670 (1112)
Q Consensus 661 ~~~~l~~~~~ 670 (1112)
...-+...|+
T Consensus 143 ~~~w~~~~f~ 152 (396)
T TIGR01547 143 PLHWVKKRFI 152 (396)
T ss_pred CccHHHHHHH
Confidence 3333333443
|
This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354. |
| >smart00491 HELICc2 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.035 Score=55.21 Aligned_cols=93 Identities=16% Similarity=0.229 Sum_probs=57.8
Q ss_pred HHHHHHHHHhcCC---CeeeecCCCCHHHHHHHHHHhhcCCc---cEEEecCc--ccccCCCCC--ccEEEEeCCCCC--
Q 001261 727 CDALFRDLLKHGY---PCLSLHGAKDQTDRESTISDFKSNVC---NLLIATSV--AARGLDVKE--LELVINFDAPNH-- 794 (1112)
Q Consensus 727 ~~~l~~~L~~~g~---~~~~ihg~~~~~~R~~~~~~F~~g~~---~VLVaT~v--~~~GlDi~~--v~~VI~~d~p~s-- 794 (1112)
.+.++..+...++ ...++.-+....+...++..|+.... .||+|+.- ++.|||+++ +.+||..++|..
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~ 83 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNP 83 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCC
Confidence 3445555554432 12222222333344678888886543 68888866 999999998 688998888741
Q ss_pred --H---------------------------hHHHHHhcccCCCCCccEEEEEec
Q 001261 795 --Y---------------------------EDYVHRVGRTGRAGRKGCAITFIS 819 (1112)
Q Consensus 795 --~---------------------------~~y~QriGR~gR~G~~g~~i~~~~ 819 (1112)
+ ....|.+||+-|....--+++|++
T Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D 137 (142)
T smart00491 84 DSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLD 137 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEe
Confidence 1 112488999999865544555554
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.17 Score=58.82 Aligned_cols=166 Identities=16% Similarity=0.162 Sum_probs=83.1
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc--cchhHHHHHHHHHHHHhhhcCceEEEEeCCCChH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVA 581 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~--PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~ 581 (1112)
+.-++++|++|+|||+.....+...... .|..++++. +.|..+. ..+..++..+++.+..+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~-------~G~~V~Lit~Dt~R~aA~---eQLk~yAe~lgvp~~~~------- 285 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLH-------MGKSVSLYTTDNYRIAAI---EQLKRYADTMGMPFYPV------- 285 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHh-------cCCeEEEecccchhhhHH---HHHHHHHHhcCCCeeeh-------
Confidence 3457788999999998766555433222 234444444 4455444 24555555555533211
Q ss_pred HHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhh-ccCChhHHHHHHHhcC---CCCcEEEEecc
Q 001261 582 QQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF-DMGFEPQITRIVQNIR---PDRQTVLFSAT 657 (1112)
Q Consensus 582 ~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~-~~gf~~~i~~il~~~~---~~~q~il~SAT 657 (1112)
..+..+...+. -..+++||||=+-++. +......+..++..+. +..-++++|||
T Consensus 286 --------------~~~~~l~~~l~--------~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt 343 (432)
T PRK12724 286 --------------KDIKKFKETLA--------RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSST 343 (432)
T ss_pred --------------HHHHHHHHHHH--------hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCC
Confidence 01122222221 1356788888765542 2222334444444432 23457888999
Q ss_pred ccH-HHHHHHHHhcCCCeEEEEcCcccccCCccE-EEEecccchhHHHHHHHHHhhhcCCeEEEEeCCH
Q 001261 658 FPR-QVEILARKVLNKPVEIQVGGRSVVNKDITQ-LVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQ 724 (1112)
Q Consensus 658 ~~~-~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q-~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~ 724 (1112)
... .+...+..|-.-++ .. ++.-.+...+.-.++.++... +-++..++..+
T Consensus 344 ~~~~~~~~~~~~f~~~~~--------------~glIlTKLDEt~~~G~il~i~~~~--~lPI~ylt~GQ 396 (432)
T PRK12724 344 SSYHHTLTVLKAYESLNY--------------RRILLTKLDEADFLGSFLELADTY--SKSFTYLSVGQ 396 (432)
T ss_pred CCHHHHHHHHHHhcCCCC--------------CEEEEEcccCCCCccHHHHHHHHH--CCCEEEEecCC
Confidence 876 45555555422221 11 122334445555566666542 33555555443
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.081 Score=53.34 Aligned_cols=20 Identities=35% Similarity=0.308 Sum_probs=15.0
Q ss_pred EEEEcCCCChHHHHHHHHHH
Q 001261 507 CIGVAKTGSGKTLAFVLPML 526 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l 526 (1112)
++++|++|+|||+.+...+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~ 21 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLAL 21 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHH
Confidence 67899999999975444333
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.016 Score=56.56 Aligned_cols=19 Identities=37% Similarity=0.335 Sum_probs=15.6
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
+..++++|++|+|||+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 2 GEVILIVGPPGSGKTTLAR 20 (148)
T ss_pred CCEEEEECCCCCcHHHHHH
Confidence 4578999999999997544
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.11 Score=57.68 Aligned_cols=133 Identities=21% Similarity=0.283 Sum_probs=67.7
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc--cchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHH
Q 001261 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQ 582 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~--PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~ 582 (1112)
+-++++|++|+|||++..-.+... .. .|.+++++. +.|.-+. ..+..++...++.+.....+.....
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l-~~-------~g~~V~li~~D~~r~~a~---~ql~~~~~~~~i~~~~~~~~~dp~~ 141 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKL-KK-------QGKSVLLAAGDTFRAAAI---EQLEEWAKRLGVDVIKQKEGADPAA 141 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH-Hh-------cCCEEEEEeCCCCCHHHH---HHHHHHHHhCCeEEEeCCCCCCHHH
Confidence 456778999999998655544332 22 245565555 3344332 3455555556655443322221111
Q ss_pred HHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhh-ccCChhHHHHHHHhcC------CCCcEEEEe
Q 001261 583 QISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF-DMGFEPQITRIVQNIR------PDRQTVLFS 655 (1112)
Q Consensus 583 ~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~-~~gf~~~i~~il~~~~------~~~q~il~S 655 (1112)
. +.+.+.. .....+++||||=+-++. +......+..+...+. ++.-+++++
T Consensus 142 ~-----------------~~~~l~~-----~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~ 199 (272)
T TIGR00064 142 V-----------------AFDAIQK-----AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLD 199 (272)
T ss_pred H-----------------HHHHHHH-----HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEE
Confidence 0 0111110 112345677777666543 1122334455554444 566678899
Q ss_pred ccccHHHHHHHHHhc
Q 001261 656 ATFPRQVEILARKVL 670 (1112)
Q Consensus 656 AT~~~~~~~l~~~~~ 670 (1112)
||........+..|.
T Consensus 200 a~~~~~~~~~~~~f~ 214 (272)
T TIGR00064 200 ATTGQNALEQAKVFN 214 (272)
T ss_pred CCCCHHHHHHHHHHH
Confidence 997665444444444
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase) | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.019 Score=69.34 Aligned_cols=150 Identities=17% Similarity=0.167 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHc-----C----CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH
Q 001261 492 PIQAQALPVIMS-----G----RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 492 ~iQ~~ai~~il~-----g----~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~ 562 (1112)
|+|.-.+-.++. | +.+++.-+=|.|||......++.++.-. ...++.++++++++.-|..++..+..
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~----g~~~~~i~~~A~~~~QA~~~f~~~~~ 76 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD----GEPGAEIYCAANTRDQAKIVFDEAKK 76 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC----CccCceEEEEeCCHHHHHHHHHHHHH
Confidence 578877777662 2 3477788999999986665555555432 23478899999999999999999998
Q ss_pred HhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHH
Q 001261 563 FAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIV 642 (1112)
Q Consensus 563 ~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il 642 (1112)
+.......... .. . .+.... ...|.+...+.++..+.......-.+ +..++|+||+|.+-+......+..-+
T Consensus 77 ~i~~~~~l~~~-~~-~----~~~~~~-~~~i~~~~~~s~~~~~s~~~~~~dG~-~~~~~i~DE~h~~~~~~~~~~l~~g~ 148 (477)
T PF03354_consen 77 MIEASPELRKR-KK-P----KIIKSN-KKEIEFPKTGSFFKALSSDADSLDGL-NPSLAIFDELHAHKDDELYDALESGM 148 (477)
T ss_pred HHHhChhhccc-hh-h----hhhhhh-ceEEEEcCCCcEEEEEecCCCCccCC-CCceEEEeCCCCCCCHHHHHHHHhhh
Confidence 87653211100 00 0 000000 12333332233333332222222222 46899999999876543333333333
Q ss_pred HhcCCCCcEEEE
Q 001261 643 QNIRPDRQTVLF 654 (1112)
Q Consensus 643 ~~~~~~~q~il~ 654 (1112)
.. +++.+++.+
T Consensus 149 ~~-r~~pl~~~I 159 (477)
T PF03354_consen 149 GA-RPNPLIIII 159 (477)
T ss_pred cc-CCCceEEEE
Confidence 33 345555554
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. |
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.087 Score=58.18 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=20.3
Q ss_pred HHHcCCCEEEEcCCCChHHHHHHHHH
Q 001261 500 VIMSGRDCIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 500 ~il~g~dvii~a~TGsGKT~~~llp~ 525 (1112)
++..+..++++||+|+|||..+....
T Consensus 98 ~i~~~~~v~l~Gp~GtGKThLa~al~ 123 (259)
T PRK09183 98 FIERNENIVLLGPSGVGKTHLAIALG 123 (259)
T ss_pred chhcCCeEEEEeCCCCCHHHHHHHHH
Confidence 35578899999999999997555443
|
|
| >PHA02533 17 large terminase protein; Provisional | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.071 Score=64.74 Aligned_cols=72 Identities=13% Similarity=0.071 Sum_probs=55.4
Q ss_pred CChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhh
Q 001261 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKV 566 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~ 566 (1112)
.|.|+|...+..+..++-.++..+=..|||++....++..+... .+..+++++|+..-|..++..++.+...
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~------~~~~v~i~A~~~~QA~~vF~~ik~~ie~ 130 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN------KDKNVGILAHKASMAAEVLDRTKQAIEL 130 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC------CCCEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 46799999998877677777888888999987776555444322 2568999999999999988888776554
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.095 Score=54.60 Aligned_cols=48 Identities=17% Similarity=0.227 Sum_probs=31.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001261 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
+++.|++|+|||+..+-.+...+. +|..|++++. .+...++...+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~--------~g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA--------RGEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH--------CCCcEEEEEC-CCCHHHHHHHHHHc
Confidence 688999999999865555554432 2566777754 45556666655554
|
A related protein is found in archaea. |
| >COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.021 Score=62.12 Aligned_cols=53 Identities=25% Similarity=0.339 Sum_probs=40.6
Q ss_pred CCCCCcccccccCCCCHHHHHHHHH-CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcC
Q 001261 460 KDVPKPIKTWHQTGLTSKIMETIRK-LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQ 532 (1112)
Q Consensus 460 ~~~p~pi~~~~~~~L~~~l~~~l~~-~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~ 532 (1112)
..+|..|.+|.+++||+-+.+.+.. .| =+||.||||||||+. +..|+.++...
T Consensus 99 R~Ip~~i~~~e~LglP~i~~~~~~~~~G-------------------LILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 99 RLIPSKIPTLEELGLPPIVRELAESPRG-------------------LILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred eccCccCCCHHHcCCCHHHHHHHhCCCc-------------------eEEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 3468889999999999988774432 22 367789999999975 77788887764
|
|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.065 Score=58.27 Aligned_cols=47 Identities=9% Similarity=0.108 Sum_probs=25.9
Q ss_pred CCceEEEeccchhhhccC-ChhHHHHHHHhcCC-CCcEEEEeccccHHH
Q 001261 616 RRVTYLVMDEADRMFDMG-FEPQITRIVQNIRP-DRQTVLFSATFPRQV 662 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~g-f~~~i~~il~~~~~-~~q~il~SAT~~~~~ 662 (1112)
.++.+|||||+|.+.... ....+..++..+.. ..++|+.|-..|...
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 456799999999875332 22234445544433 334555555555443
|
|
| >PRK14712 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.074 Score=71.18 Aligned_cols=62 Identities=24% Similarity=0.320 Sum_probs=44.9
Q ss_pred CChHHHHHHHHHHHcC--CCEEEEcCCCChHHHHH--HHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHH
Q 001261 489 KPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAF--VLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQI 556 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g--~dvii~a~TGsGKT~~~--llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~ 556 (1112)
.+++-|.+|+..++.. +-++|.|..|+|||+++ ++-++..+.. ..+..++.++||-..+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e------~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPE------SERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhh------ccCceEEEEechHHHHHHH
Confidence 6899999999999965 66888899999999763 2222322211 2356788899998776654
|
|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.14 Score=55.97 Aligned_cols=47 Identities=17% Similarity=0.183 Sum_probs=27.3
Q ss_pred cCCceEEEeccchhhhccCC-hhHHHHHHHhcCC-CCcEEEEeccccHH
Q 001261 615 LRRVTYLVMDEADRMFDMGF-EPQITRIVQNIRP-DRQTVLFSATFPRQ 661 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~gf-~~~i~~il~~~~~-~~q~il~SAT~~~~ 661 (1112)
+..+++|||||.+......+ ...+..|+..... ...+|++|---+..
T Consensus 161 l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~~~~ 209 (248)
T PRK12377 161 LCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEA 209 (248)
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHH
Confidence 45689999999964432222 2344455555433 46677776654433
|
|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.2 Score=58.83 Aligned_cols=127 Identities=15% Similarity=0.201 Sum_probs=66.0
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc--cchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHH-
Q 001261 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQ- 582 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~--PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~- 582 (1112)
-++++|++|+|||++..-.+. ++.. .|.++++++ |.|.-|.+ +++.++...++.+...+.+.....
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~-~l~~-------~G~kV~lV~~D~~R~aA~e---QLk~~a~~~~vp~~~~~~~~dp~~i 170 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAY-YYQR-------KGFKPCLVCADTFRAGAFD---QLKQNATKARIPFYGSYTESDPVKI 170 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHH-------CCCCEEEEcCcccchhHHH---HHHHHhhccCCeEEeecCCCCHHHH
Confidence 467789999999976554333 2222 244566655 45654443 344455556666655444333211
Q ss_pred ---HHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhc-cCChhHHHHHHHhcCCCCcEEEEeccc
Q 001261 583 ---QISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 583 ---~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~-~gf~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
.+..+.. ..+++||||=+-++-. ......+..+...+.|+.-+++++||.
T Consensus 171 ~~~~l~~~~~--------------------------~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~ 224 (429)
T TIGR01425 171 ASEGVEKFKK--------------------------ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSI 224 (429)
T ss_pred HHHHHHHHHh--------------------------CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEecccc
Confidence 1111111 1244555555543211 112334555555566666678888887
Q ss_pred cHHHHHHHHHh
Q 001261 659 PRQVEILARKV 669 (1112)
Q Consensus 659 ~~~~~~l~~~~ 669 (1112)
.......+..|
T Consensus 225 Gq~a~~~a~~F 235 (429)
T TIGR01425 225 GQAAEAQAKAF 235 (429)
T ss_pred ChhHHHHHHHH
Confidence 65555455444
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.049 Score=59.05 Aligned_cols=47 Identities=17% Similarity=0.316 Sum_probs=30.0
Q ss_pred cCCceEEEeccchhhhcc-CChhHHHHHHHhcCC-CCcEEEEeccccHH
Q 001261 615 LRRVTYLVMDEADRMFDM-GFEPQITRIVQNIRP-DRQTVLFSATFPRQ 661 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~-gf~~~i~~il~~~~~-~~q~il~SAT~~~~ 661 (1112)
+.++++|||||+|.+... .+...+..++..+.. ..++|++|++.++.
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 345789999999987532 233355566665544 34567788876554
|
|
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.18 Score=59.56 Aligned_cols=59 Identities=20% Similarity=0.195 Sum_probs=33.8
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc--cchhHHHHHHHHHHHHhhhcCceEEEE
Q 001261 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCVPV 574 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~--PtreLa~Q~~~~~~~~~~~~~i~~~~~ 574 (1112)
-++++|++|+|||++..-.+... ... .|.++++++ +.|..+. ..++.++...++.+...
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l-~~~------~G~kV~lV~~D~~R~aa~---eQL~~~a~~~gv~v~~~ 162 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYL-KKK------KKKKVLLVAADVYRPAAI---EQLKTLGEQIGVPVFPS 162 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHH-HHh------cCCcEEEEEccccchHHH---HHHHHHHhhcCCeEEec
Confidence 46778999999998655444432 221 144555555 4554443 33445555567665543
|
|
| >PRK13709 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.095 Score=71.14 Aligned_cols=129 Identities=19% Similarity=0.200 Sum_probs=75.5
Q ss_pred CCChHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001261 488 EKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g--~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
..+++.|..|+..++.+ +-++|.|..|+|||++ +-.++..+... ....+..++.++||--.|..+. .
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~-l~~v~~~~~~l---~~~~~~~V~glAPTgrAAk~L~----e--- 1034 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ-FRAVMSAVNTL---PESERPRVVGLGPTHRAVGEMR----S--- 1034 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH-HHHHHHHHHHh---hcccCceEEEECCcHHHHHHHH----h---
Confidence 36899999999999975 4678889999999975 33333333211 1123567888999987765442 1
Q ss_pred hcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHH--hcCCcccccCCceEEEeccchhhhccCChhHHHHHHH
Q 001261 566 VMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILC--TSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ 643 (1112)
Q Consensus 566 ~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~--~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~ 643 (1112)
.|+... |-.+|+.... ...+. ......++||||||=.+. ...+..++.
T Consensus 1035 -~Gi~A~------------------------TI~s~L~~~~~~~~~~~-~~~~~~~llIVDEaSMv~----~~~m~~Ll~ 1084 (1747)
T PRK13709 1035 -AGVDAQ------------------------TLASFLHDTQLQQRSGE-TPDFSNTLFLLDESSMVG----NTDMARAYA 1084 (1747)
T ss_pred -cCcchh------------------------hHHHHhccccccccccc-CCCCCCcEEEEEcccccc----HHHHHHHHH
Confidence 233221 1111111000 00001 112345799999998654 334556666
Q ss_pred hcCC-CCcEEEEecc
Q 001261 644 NIRP-DRQTVLFSAT 657 (1112)
Q Consensus 644 ~~~~-~~q~il~SAT 657 (1112)
.+.. +.++||+.-+
T Consensus 1085 ~~~~~garvVLVGD~ 1099 (1747)
T PRK13709 1085 LIAAGGGRAVSSGDT 1099 (1747)
T ss_pred hhhcCCCEEEEecch
Confidence 6653 5778877766
|
|
| >TIGR01075 uvrD DNA helicase II | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.064 Score=68.33 Aligned_cols=71 Identities=14% Similarity=0.119 Sum_probs=53.6
Q ss_pred CCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
..++|-|.+++.. ....++|.|..|||||.+.+.-+...|.... -....+|+|+.|+..|..+...+..++
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~----v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVEN----ASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCC----CCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 3578999998864 3568999999999999986666655554311 123478999999999999888887764
|
Designed to identify uvrD members of the uvrD/rep subfamily. |
| >PRK10919 ATP-dependent DNA helicase Rep; Provisional | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.066 Score=67.44 Aligned_cols=70 Identities=19% Similarity=0.176 Sum_probs=53.0
Q ss_pred CChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
.+++-|.+|+.. ....++|+|..|||||.+.+.-+...|.... -....+|+|+.|+..|..+...+..++
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~----v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG----YQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC----CCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 367899998865 3567899999999999987766666554321 123478999999999998888777654
|
|
| >PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.013 Score=59.97 Aligned_cols=124 Identities=23% Similarity=0.246 Sum_probs=54.7
Q ss_pred EEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHH
Q 001261 508 IGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISEL 587 (1112)
Q Consensus 508 ii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l 587 (1112)
|+.|+-|-|||.+..+.+...+.. ....++|.+|+.+-+..++..+...+..++++......+. ......
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~-------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~~---~~~~~~ 70 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK-------GKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRIG---QIIKLR 70 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS------------EEEE-SS--S-HHHHHCC---------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh-------cCceEEEecCCHHHHHHHHHHHHhhccccccccccccccc---cccccc
Confidence 578999999998766554322211 1246889999999888777766665555544431000000 000111
Q ss_pred hcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEecccc
Q 001261 588 KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFP 659 (1112)
Q Consensus 588 ~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~ 659 (1112)
..+..|.+..|..+... ....++||||||=.+- .+.+..++... ..++||.|..
T Consensus 71 ~~~~~i~f~~Pd~l~~~----------~~~~DlliVDEAAaIp----~p~L~~ll~~~----~~vv~stTi~ 124 (177)
T PF05127_consen 71 FNKQRIEFVAPDELLAE----------KPQADLLIVDEAAAIP----LPLLKQLLRRF----PRVVFSTTIH 124 (177)
T ss_dssp --CCC--B--HHHHCCT--------------SCEEECTGGGS-----HHHHHHHHCCS----SEEEEEEEBS
T ss_pred cccceEEEECCHHHHhC----------cCCCCEEEEechhcCC----HHHHHHHHhhC----CEEEEEeecc
Confidence 12467778888765321 1235799999999753 45666665333 3678888864
|
This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B. |
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.15 Score=57.12 Aligned_cols=25 Identities=32% Similarity=0.270 Sum_probs=18.1
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLR 527 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~ 527 (1112)
.++.++++|+||+|||+.....+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456888999999999865544433
|
|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.13 Score=55.56 Aligned_cols=21 Identities=24% Similarity=0.177 Sum_probs=16.6
Q ss_pred cCCCEEEEcCCCChHHHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~ll 523 (1112)
.+..+++.|++|+|||..+..
T Consensus 37 ~~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 456799999999999975443
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.12 Score=65.39 Aligned_cols=94 Identities=17% Similarity=0.224 Sum_probs=73.5
Q ss_pred cchhHHH-HHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHh----cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEec
Q 001261 697 ESDRFLR-LLELLGEWYEKGKILIFVHSQEKCDALFRDLLK----HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT 771 (1112)
Q Consensus 697 ~~~k~~~-ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~----~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT 771 (1112)
...|... ++.++.....+.++||.+||..-|.+++..|.. .|+.+..+||+++..++..++..+.+|...|||+|
T Consensus 292 GSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT 371 (681)
T PRK10917 292 GSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGT 371 (681)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEch
Confidence 3455443 334444444456899999999999888777765 37899999999999999999999999999999999
Q ss_pred Cc-ccccCCCCCccEEEEeC
Q 001261 772 SV-AARGLDVKELELVINFD 790 (1112)
Q Consensus 772 ~v-~~~GlDi~~v~~VI~~d 790 (1112)
.. +...+.+.++.+||.-.
T Consensus 372 ~~ll~~~v~~~~l~lvVIDE 391 (681)
T PRK10917 372 HALIQDDVEFHNLGLVIIDE 391 (681)
T ss_pred HHHhcccchhcccceEEEec
Confidence 64 44567888999998643
|
|
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.18 Score=55.37 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=33.2
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDI 560 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~ 560 (1112)
.+.++++.|++|+|||..++..+...+ . .|..|+ .+++.+|+.++...+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~-------~g~sv~-f~~~~el~~~Lk~~~ 152 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-K-------AGISVL-FITAPDLLSKLKAAF 152 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-H-------cCCeEE-EEEHHHHHHHHHHHH
Confidence 678999999999999986555444443 3 244444 457778877654433
|
|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.31 Score=57.56 Aligned_cols=133 Identities=18% Similarity=0.171 Sum_probs=63.7
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc--cchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHH
Q 001261 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ 583 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~--PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~ 583 (1112)
-++++|++|+|||++..-.+...... .|.+++++. +.|..+. ..+..++...++.+.....+.....-
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~-------~g~kV~lV~~D~~R~~a~---~QL~~~a~~~gvp~~~~~~~~~P~~i 170 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKK-------QGKKVLLVACDLYRPAAI---EQLKVLGQQVGVPVFALGKGQSPVEI 170 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHh-------CCCeEEEEeccccchHHH---HHHHHHHHhcCCceEecCCCCCHHHH
Confidence 47778999999998755544432211 134455544 3444333 34445555566665543332221111
Q ss_pred HHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhh-ccCChhHHHHHHHhcCCCCcEEEEeccccHHH
Q 001261 584 ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF-DMGFEPQITRIVQNIRPDRQTVLFSATFPRQV 662 (1112)
Q Consensus 584 ~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~-~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~ 662 (1112)
. ...+.. .....+++||||=+-++. +......+..+...+.++--+++++||.....
T Consensus 171 ~-----------------~~al~~-----~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~ 228 (428)
T TIGR00959 171 A-----------------RRALEY-----AKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDA 228 (428)
T ss_pred H-----------------HHHHHH-----HHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHH
Confidence 0 011100 011234556666555432 11122334444444555555677777766555
Q ss_pred HHHHHHhc
Q 001261 663 EILARKVL 670 (1112)
Q Consensus 663 ~~l~~~~~ 670 (1112)
...+..|.
T Consensus 229 ~~~a~~f~ 236 (428)
T TIGR00959 229 VNTAKTFN 236 (428)
T ss_pred HHHHHHHH
Confidence 55555443
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.2 Score=63.80 Aligned_cols=42 Identities=21% Similarity=0.297 Sum_probs=26.6
Q ss_pred CCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEecccc
Q 001261 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFP 659 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~ 659 (1112)
..+.+|||||+|+|.... ...|.++|...+....+||.+ |-+
T Consensus 119 ~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t-t~~ 160 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT-TEP 160 (824)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe-CCh
Confidence 568899999999986533 234555566655555445444 543
|
|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.13 Score=55.83 Aligned_cols=45 Identities=13% Similarity=0.308 Sum_probs=28.4
Q ss_pred CCceEEEeccchhhhcc-CChhHHHHHHHhcCCCCcEEEEeccccH
Q 001261 616 RRVTYLVMDEADRMFDM-GFEPQITRIVQNIRPDRQTVLFSATFPR 660 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~-gf~~~i~~il~~~~~~~q~il~SAT~~~ 660 (1112)
..+++||||++|.+... .+...+..++..+......+++++|.++
T Consensus 96 ~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 96 EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 35679999999976432 2345577777766554445566666443
|
|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.12 Score=56.16 Aligned_cols=43 Identities=16% Similarity=0.256 Sum_probs=24.2
Q ss_pred ceEEEeccchhhhcc-CChhHHHHHHHhcCC-CCcEEEEeccccH
Q 001261 618 VTYLVMDEADRMFDM-GFEPQITRIVQNIRP-DRQTVLFSATFPR 660 (1112)
Q Consensus 618 i~~vViDEah~~~~~-gf~~~i~~il~~~~~-~~q~il~SAT~~~ 660 (1112)
+.+|||||+|.+... .+...+..++..+.. ....|++|++.|+
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p 142 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPP 142 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCCh
Confidence 568999999987532 234445555555433 2223444555443
|
|
| >COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.31 Score=60.34 Aligned_cols=149 Identities=20% Similarity=0.221 Sum_probs=92.4
Q ss_pred HHHCCCCCChHHHHHHHHHHHcCC--CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHH
Q 001261 482 IRKLNYEKPMPIQAQALPVIMSGR--DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSD 559 (1112)
Q Consensus 482 l~~~~~~~pt~iQ~~ai~~il~g~--dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~ 559 (1112)
|..+....+..-|.+.+..++..+ -+++.|.-|=|||.+.-+.+... .... + .-.++|.+|+.+-+..++.-
T Consensus 207 l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~-~~~~----~-~~~iiVTAP~~~nv~~Lf~f 280 (758)
T COG1444 207 LYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAA-ARLA----G-SVRIIVTAPTPANVQTLFEF 280 (758)
T ss_pred HhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHH-HHhc----C-CceEEEeCCCHHHHHHHHHH
Confidence 444555555566666667777554 47778999999998877666322 2210 1 34688999999998888888
Q ss_pred HHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHH
Q 001261 560 IRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQIT 639 (1112)
Q Consensus 560 ~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~ 639 (1112)
+.+-+..+|+............ +..-..+..|-+.+|.... . ..++||||||=.|- .+.+.
T Consensus 281 a~~~l~~lg~~~~v~~d~~g~~--~~~~~~~~~i~y~~P~~a~------------~-~~DllvVDEAAaIp----lplL~ 341 (758)
T COG1444 281 AGKGLEFLGYKRKVAPDALGEI--REVSGDGFRIEYVPPDDAQ------------E-EADLLVVDEAAAIP----LPLLH 341 (758)
T ss_pred HHHhHHHhCCccccccccccce--eeecCCceeEEeeCcchhc------------c-cCCEEEEehhhcCC----hHHHH
Confidence 8777777765533222211000 0000122346666775431 1 15799999999763 56666
Q ss_pred HHHHhcCCCCcEEEEecccc
Q 001261 640 RIVQNIRPDRQTVLFSATFP 659 (1112)
Q Consensus 640 ~il~~~~~~~q~il~SAT~~ 659 (1112)
+++... +.++||.|+.
T Consensus 342 ~l~~~~----~rv~~sTTIh 357 (758)
T COG1444 342 KLLRRF----PRVLFSTTIH 357 (758)
T ss_pred HHHhhc----CceEEEeeec
Confidence 666554 4689999975
|
|
| >cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.63 Score=47.04 Aligned_cols=52 Identities=15% Similarity=0.263 Sum_probs=41.3
Q ss_pred cCCceEEEeccchhhhccCCh--hHHHHHHHhcCCCCcEEEEeccccHHHHHHH
Q 001261 615 LRRVTYLVMDEADRMFDMGFE--PQITRIVQNIRPDRQTVLFSATFPRQVEILA 666 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~gf~--~~i~~il~~~~~~~q~il~SAT~~~~~~~l~ 666 (1112)
...+++|||||+=..++.++. ..+..++...+...-+|+++-.+|+.+..++
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~A 146 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAA 146 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhC
Confidence 457899999999988777754 4677788888888888888888888876654
|
This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin. |
| >PTZ00293 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.19 Score=53.06 Aligned_cols=39 Identities=15% Similarity=0.111 Sum_probs=28.4
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccc
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT 549 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Pt 549 (1112)
.|+-.++.||++||||.-++..+.++... +..++++-|.
T Consensus 3 ~G~i~vi~GpMfSGKTteLLr~i~~y~~a--------g~kv~~~kp~ 41 (211)
T PTZ00293 3 RGTISVIIGPMFSGKTTELMRLVKRFTYS--------EKKCVVIKYS 41 (211)
T ss_pred ceEEEEEECCCCChHHHHHHHHHHHHHHc--------CCceEEEEec
Confidence 35556889999999998766665555433 5678888884
|
|
| >PRK12422 chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.24 Score=59.03 Aligned_cols=50 Identities=14% Similarity=0.304 Sum_probs=30.1
Q ss_pred CCceEEEeccchhhhccC-ChhHHHHHHHhcC-CCCcEEEEeccccHHHHHH
Q 001261 616 RRVTYLVMDEADRMFDMG-FEPQITRIVQNIR-PDRQTVLFSATFPRQVEIL 665 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~g-f~~~i~~il~~~~-~~~q~il~SAT~~~~~~~l 665 (1112)
..+++|||||+|.+.... ....+..++..+. ...|+|+.|-+.|..+..+
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l 252 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAM 252 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhh
Confidence 457899999999875432 2334445554442 3466666666666665443
|
|
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.34 Score=60.03 Aligned_cols=41 Identities=15% Similarity=0.304 Sum_probs=24.4
Q ss_pred CCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccc
Q 001261 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
..+.+|||||+|+|....| ..+.++|..-+... +++|++|-
T Consensus 118 gr~KVIIIDEah~LT~~A~-NALLKtLEEPP~~v-~FILaTtd 158 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAF-NAMLKTLEEPPPHV-KFILATTD 158 (830)
T ss_pred CCceEEEEeChhhCCHHHH-HHHHHHHHhcCCCe-EEEEEECC
Confidence 3578999999998865433 23444555544444 34444453
|
|
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.28 Score=59.90 Aligned_cols=40 Identities=13% Similarity=0.253 Sum_probs=23.6
Q ss_pred cCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEe
Q 001261 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~S 655 (1112)
...+.++||||+|+|....|. .+.++|..-+....+||.|
T Consensus 122 ~gr~KViIIDEah~Ls~~AaN-ALLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFN-AMLKTLEEPPEHVKFILAT 161 (700)
T ss_pred cCCceEEEEEChHhcCHHHHH-HHHHhhccCCCCceEEEEe
Confidence 346789999999988654332 3334444434445444444
|
|
| >TIGR01074 rep ATP-dependent DNA helicase Rep | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.13 Score=65.05 Aligned_cols=90 Identities=16% Similarity=0.086 Sum_probs=63.3
Q ss_pred ChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCc
Q 001261 490 PMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGV 569 (1112)
Q Consensus 490 pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i 569 (1112)
++|-|.+++.. ....++|+|..|||||.+.+.-+...+.... .....+|+|+.|+..|.++...+...+...
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~----~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~-- 73 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCG----YKARNIAAVTFTNKAAREMKERVAKTLGKG-- 73 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC----CCHHHeEEEeccHHHHHHHHHHHHHHhCcc--
Confidence 67889998764 4568999999999999887766666654321 123468999999999999888777654210
Q ss_pred eEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHH
Q 001261 570 RCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILC 606 (1112)
Q Consensus 570 ~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~ 606 (1112)
....|.|+|..+|...+.
T Consensus 74 -------------------~~~~v~v~TfHs~a~~il 91 (664)
T TIGR01074 74 -------------------EARGLTISTFHTLGLDII 91 (664)
T ss_pred -------------------ccCCeEEEeHHHHHHHHH
Confidence 113567888877755443
|
Designed to identify rep members of the uvrD/rep subfamily. |
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.21 Score=59.73 Aligned_cols=110 Identities=15% Similarity=0.107 Sum_probs=58.4
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI 584 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~ 584 (1112)
..+++.|++|+|||.. +..+.+.+... ..+..++++.+ ..+...+...+..-.
T Consensus 142 npl~i~G~~G~GKTHL-l~Ai~~~l~~~-----~~~~~v~yv~~-~~f~~~~~~~l~~~~-------------------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHL-LKAAKNYIESN-----FSDLKVSYMSG-DEFARKAVDILQKTH-------------------- 194 (450)
T ss_pred CceEEECCCCCcHHHH-HHHHHHHHHHh-----CCCCeEEEEEH-HHHHHHHHHHHHHhh--------------------
Confidence 4588999999999953 34445544431 12445565544 555554443332200
Q ss_pred HHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccC-ChhHHHHHHHhcCC-CCcEEEEeccccHHH
Q 001261 585 SELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG-FEPQITRIVQNIRP-DRQTVLFSATFPRQV 662 (1112)
Q Consensus 585 ~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~g-f~~~i~~il~~~~~-~~q~il~SAT~~~~~ 662 (1112)
+.+..+. ..+..+++|||||+|.+.... ....+..++..+.. ..|+|++|-..|..+
T Consensus 195 --------------~~~~~~~-------~~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 195 --------------KEIEQFK-------NEICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred --------------hHHHHHH-------HHhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 1111111 123467899999999764321 23345555555433 346666555555443
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.26 Score=62.13 Aligned_cols=92 Identities=20% Similarity=0.222 Sum_probs=72.7
Q ss_pred chhHHHHHHHHHhhhc-CCeEEEEeCCHHHHHHHHHHHHh-cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCccc
Q 001261 698 SDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLK-HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA 775 (1112)
Q Consensus 698 ~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~-~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~ 775 (1112)
..|....+..+..... +.++||.++++.-+.++...|.+ .|..+..+||+++..+|..++..+..|..+|+|+|..+.
T Consensus 173 SGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal 252 (679)
T PRK05580 173 SGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL 252 (679)
T ss_pred ChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh
Confidence 4555555444444333 45899999999999999999976 488899999999999999999999999999999997443
Q ss_pred ccCCCCCccEEEEeC
Q 001261 776 RGLDVKELELVINFD 790 (1112)
Q Consensus 776 ~GlDi~~v~~VI~~d 790 (1112)
. +.+.++.+||.-.
T Consensus 253 ~-~p~~~l~liVvDE 266 (679)
T PRK05580 253 F-LPFKNLGLIIVDE 266 (679)
T ss_pred c-ccccCCCEEEEEC
Confidence 2 5677888888644
|
|
| >PRK11054 helD DNA helicase IV; Provisional | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.14 Score=64.14 Aligned_cols=72 Identities=22% Similarity=0.194 Sum_probs=52.8
Q ss_pred CCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001261 486 NYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 486 ~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
.-..+++-|..|+-. ....++|.|..|||||.+.+.-+...|.... ..+..+|+|+.|+..|..+...+...
T Consensus 193 e~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~----~~~~~IL~ltft~~AA~em~eRL~~~ 264 (684)
T PRK11054 193 ESSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQ----AQPEQILLLAFGRQAAEEMDERIRER 264 (684)
T ss_pred cCCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCC----CCHHHeEEEeccHHHHHHHHHHHHHh
Confidence 335789999998853 3456899999999999886665554443321 12458999999999999888777664
|
|
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.22 Score=56.95 Aligned_cols=35 Identities=14% Similarity=0.022 Sum_probs=27.3
Q ss_pred ChHHHHHHHHHHHcCC----CEEEEcCCCChHHHHHHHH
Q 001261 490 PMPIQAQALPVIMSGR----DCIGVAKTGSGKTLAFVLP 524 (1112)
Q Consensus 490 pt~iQ~~ai~~il~g~----dvii~a~TGsGKT~~~llp 524 (1112)
++|+|...|..++... -+|+.|+.|+|||..+...
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~ 42 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERL 42 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHH
Confidence 4699999998887542 4789999999999754443
|
|
| >PHA02544 44 clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.28 Score=55.96 Aligned_cols=39 Identities=10% Similarity=0.163 Sum_probs=25.4
Q ss_pred CceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEe
Q 001261 617 RVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~S 655 (1112)
...+|||||+|.+........+..++...+...++|+.|
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 457999999998733223445666676666666555544
|
|
| >PRK11773 uvrD DNA-dependent helicase II; Provisional | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.12 Score=65.77 Aligned_cols=70 Identities=16% Similarity=0.130 Sum_probs=53.0
Q ss_pred CChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
.++|-|.+++.. ....++|.|..|||||.+.+.-+...+.... -....+|+|+-|+..|..+...+..++
T Consensus 9 ~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~----v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 9 SLNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLMQVEN----ASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred hcCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCC----CChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 478999998864 3468999999999999987666665553221 123468999999999999888887764
|
|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.18 Score=54.47 Aligned_cols=43 Identities=14% Similarity=0.280 Sum_probs=25.9
Q ss_pred CceEEEeccchhhhccCChhHHHHHHHhcCCCCc-EEEEeccccH
Q 001261 617 RVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQ-TVLFSATFPR 660 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q-~il~SAT~~~ 660 (1112)
..++|||||+|.+... ....+..++..+..... +++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 3568999999986432 23344455554443433 5777777654
|
|
| >KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.21 Score=54.76 Aligned_cols=44 Identities=14% Similarity=0.271 Sum_probs=30.8
Q ss_pred ccCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccc
Q 001261 614 NLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 614 ~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
....+.+|||||||.|... -+..+.+++........+||...-+
T Consensus 126 ~~~~fKiiIlDEcdsmtsd-aq~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMTSD-AQAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred CCCcceEEEEechhhhhHH-HHHHHHHHHhccccceEEEEEcCCh
Confidence 4566789999999988643 3556677777766666666666553
|
|
| >PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.2 Score=52.07 Aligned_cols=141 Identities=14% Similarity=0.063 Sum_probs=79.1
Q ss_pred HcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCC---
Q 001261 502 MSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGS--- 578 (1112)
Q Consensus 502 l~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~--- 578 (1112)
+....+++...+|.|||.+++--+++.+- .|.+|+|+-=.+--. -+.+...+....++.+...-.+.
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g--------~G~~V~ivQFlKg~~--~~GE~~~l~~l~~v~~~~~g~~~~~~ 89 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVG--------HGKKVGVVQFIKGAW--STGERNLLEFGGGVEFHVMGTGFTWE 89 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHH--------CCCeEEEEEEecCCC--ccCHHHHHhcCCCcEEEECCCCCccc
Confidence 45568899999999999998888887643 466777764222110 01122222111133332211110
Q ss_pred --ChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCCh--hHHHHHHHhcCCCCcEEEE
Q 001261 579 --GVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFE--PQITRIVQNIRPDRQTVLF 654 (1112)
Q Consensus 579 --~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~--~~i~~il~~~~~~~q~il~ 654 (1112)
...+.... ....+..... ...-..+++|||||+-..++.|+. ..+..++...++..-+|++
T Consensus 90 ~~~~~e~~~~-----------~~~~~~~a~~----~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlT 154 (191)
T PRK05986 90 TQDRERDIAA-----------AREGWEEAKR----MLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVIT 154 (191)
T ss_pred CCCcHHHHHH-----------HHHHHHHHHH----HHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEE
Confidence 01111110 0011111111 122356899999999999888864 4677778877777777777
Q ss_pred eccccHHHHHHHH
Q 001261 655 SATFPRQVEILAR 667 (1112)
Q Consensus 655 SAT~~~~~~~l~~ 667 (1112)
.-.+|+.+..++.
T Consensus 155 GR~~p~~Lie~AD 167 (191)
T PRK05986 155 GRGAPRELIEAAD 167 (191)
T ss_pred CCCCCHHHHHhCc
Confidence 7778887766553
|
|
| >PHA03333 putative ATPase subunit of terminase; Provisional | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.71 Score=56.42 Aligned_cols=72 Identities=11% Similarity=0.087 Sum_probs=50.7
Q ss_pred ChHHHHHHHHHH---HcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhh
Q 001261 490 PMPIQAQALPVI---MSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKV 566 (1112)
Q Consensus 490 pt~iQ~~ai~~i---l~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~ 566 (1112)
|.|.=.+-|..+ +..+-.++.+|=|.|||.+..+.++..+.. .+..++|.+|...-+.+++..+..++..
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f-------~Gi~IlvTAH~~~ts~evF~rv~~~le~ 242 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF-------LEIDIVVQAQRKTMCLTLYNRVETVVHA 242 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh-------cCCeEEEECCChhhHHHHHHHHHHHHHH
Confidence 344444444443 456778889999999998766555433321 2568999999999999999998888875
Q ss_pred cC
Q 001261 567 MG 568 (1112)
Q Consensus 567 ~~ 568 (1112)
++
T Consensus 243 lg 244 (752)
T PHA03333 243 YQ 244 (752)
T ss_pred hc
Confidence 43
|
|
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.66 Score=47.73 Aligned_cols=54 Identities=17% Similarity=0.281 Sum_probs=29.8
Q ss_pred CceEEEeccchhhh-ccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhc
Q 001261 617 RVTYLVMDEADRMF-DMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVL 670 (1112)
Q Consensus 617 ~i~~vViDEah~~~-~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~ 670 (1112)
.+.+||||....+. +..+...+..+.....++.-+++++|+.+......+..+.
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~~ 136 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAFN 136 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHH
Confidence 46678888887642 2223334444444444566667777765555444444443
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >COG3973 Superfamily I DNA and RNA helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.21 Score=59.24 Aligned_cols=66 Identities=18% Similarity=0.183 Sum_probs=45.0
Q ss_pred HHHHHHHHHH--cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHH
Q 001261 493 IQAQALPVIM--SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDI 560 (1112)
Q Consensus 493 iQ~~ai~~il--~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~ 560 (1112)
||.+-=..|. .+.-+||+|..|||||.+++--+...+...+..-. +..|||+.|.+.++.-+.+++
T Consensus 213 IQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~--~k~vlvl~PN~vFleYis~VL 280 (747)
T COG3973 213 IQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQ--AKPVLVLGPNRVFLEYISRVL 280 (747)
T ss_pred hhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccc--cCceEEEcCcHHHHHHHHHhc
Confidence 4554444454 35568889999999999888777766666543322 334999999998876544433
|
|
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.19 Score=70.03 Aligned_cols=62 Identities=29% Similarity=0.316 Sum_probs=44.5
Q ss_pred CCChHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHH---HHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHH
Q 001261 488 EKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFV---LPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQI 556 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g--~dvii~a~TGsGKT~~~l---lp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~ 556 (1112)
..+++.|.+|+..++.+ +-++|.|..|+|||+++. -++...+.. .+..++.++||-..+..+
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~-------~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES-------EQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh-------cCCeEEEEeChHHHHHHH
Confidence 36899999999999876 456778999999997641 233333222 366788899997766544
|
This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein. |
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.46 Score=51.48 Aligned_cols=52 Identities=8% Similarity=0.043 Sum_probs=31.5
Q ss_pred HcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH
Q 001261 502 MSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 502 l~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~ 562 (1112)
..|.-+++.|++|+|||+..+..+...+ . .|..+++++. -+-..++...+..
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~-~-------~g~~~~yi~~-e~~~~~~~~~~~~ 73 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFL-Q-------NGYSVSYVST-QLTTTEFIKQMMS 73 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH-h-------CCCcEEEEeC-CCCHHHHHHHHHH
Confidence 3467788999999999976444444332 2 2456777774 3333444444443
|
|
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.74 Score=51.47 Aligned_cols=129 Identities=19% Similarity=0.279 Sum_probs=70.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc--cchhHHHHHHHHHHHHhhhcCceEEEE-eCCCChHHH
Q 001261 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCVPV-YGGSGVAQQ 583 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~--PtreLa~Q~~~~~~~~~~~~~i~~~~~-~gg~~~~~~ 583 (1112)
++++|-.|+|||++..-.+. .+.. .|..||+.+ ..|+-|. ++++-|+...|+.++.. +|+.+..--
T Consensus 142 il~vGVNG~GKTTTIaKLA~-~l~~-------~g~~VllaA~DTFRAaAi---EQL~~w~er~gv~vI~~~~G~DpAaVa 210 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKLAK-YLKQ-------QGKSVLLAAGDTFRAAAI---EQLEVWGERLGVPVISGKEGADPAAVA 210 (340)
T ss_pred EEEEecCCCchHhHHHHHHH-HHHH-------CCCeEEEEecchHHHHHH---HHHHHHHHHhCCeEEccCCCCCcHHHH
Confidence 67789999999986443333 3332 366777776 4455555 44556666678877763 333322221
Q ss_pred HHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhcc-CChhHHHHHHHhcCCCCc-----E-EEEec
Q 001261 584 ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDM-GFEPQITRIVQNIRPDRQ-----T-VLFSA 656 (1112)
Q Consensus 584 ~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~-gf~~~i~~il~~~~~~~q-----~-il~SA 656 (1112)
... +.. ..-..+++|++|=|-||-+. +....+.+|..-+.+... + +.+=|
T Consensus 211 fDA------------------i~~-----Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDA 267 (340)
T COG0552 211 FDA------------------IQA-----AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDA 267 (340)
T ss_pred HHH------------------HHH-----HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEc
Confidence 111 111 12234555666666555432 234456666665555432 3 44478
Q ss_pred cccHHHHHHHHHh
Q 001261 657 TFPRQVEILARKV 669 (1112)
Q Consensus 657 T~~~~~~~l~~~~ 669 (1112)
|.-.+...-++.|
T Consensus 268 ttGqnal~QAk~F 280 (340)
T COG0552 268 TTGQNALSQAKIF 280 (340)
T ss_pred ccChhHHHHHHHH
Confidence 8776655555544
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.29 Score=54.30 Aligned_cols=54 Identities=20% Similarity=0.213 Sum_probs=32.1
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCC---CCCcEEEEccchhHHHHHHHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAG---DGPVGLIMAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~---~~~~~LIl~PtreLa~Q~~~~~~~ 562 (1112)
.+++++|+||.|||...--..-. .++.... .-|.++|-+|...-..-+|..+-.
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~----hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~ 118 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRL----HPPQSDEDAERIPVVYVQMPPEPDERRFYSAILE 118 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHH----CCCCCCCCCccccEEEEecCCCCChHHHHHHHHH
Confidence 47999999999999743222211 2221111 236777777877666656655544
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.19 Score=62.94 Aligned_cols=93 Identities=18% Similarity=0.245 Sum_probs=72.6
Q ss_pred chhHH-HHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHh----cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC
Q 001261 698 SDRFL-RLLELLGEWYEKGKILIFVHSQEKCDALFRDLLK----HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS 772 (1112)
Q Consensus 698 ~~k~~-~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~----~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~ 772 (1112)
..|.. .++.++.....+.+++|.+||..-|.+++..+.. .|+.+..+||+++...+..++..+.+|...|||+|.
T Consensus 267 SGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~ 346 (630)
T TIGR00643 267 SGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTH 346 (630)
T ss_pred CcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecH
Confidence 34443 3334444444456899999999999988877765 378999999999999999999999999999999996
Q ss_pred ccc-ccCCCCCccEEEEeC
Q 001261 773 VAA-RGLDVKELELVINFD 790 (1112)
Q Consensus 773 v~~-~GlDi~~v~~VI~~d 790 (1112)
.+- ..+.+.++.+||.-.
T Consensus 347 ~ll~~~~~~~~l~lvVIDE 365 (630)
T TIGR00643 347 ALIQEKVEFKRLALVIIDE 365 (630)
T ss_pred HHHhccccccccceEEEec
Confidence 543 567888899988533
|
|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.27 Score=59.06 Aligned_cols=48 Identities=19% Similarity=0.299 Sum_probs=26.7
Q ss_pred CCceEEEeccchhhhccC-ChhHHHHHHHhcC-CCCcEEEEeccccHHHH
Q 001261 616 RRVTYLVMDEADRMFDMG-FEPQITRIVQNIR-PDRQTVLFSATFPRQVE 663 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~g-f~~~i~~il~~~~-~~~q~il~SAT~~~~~~ 663 (1112)
..+++|||||+|.+.... ....+..++..+. ...++|+.|.+.|..+.
T Consensus 210 ~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~ 259 (450)
T PRK00149 210 RSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELP 259 (450)
T ss_pred hcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHH
Confidence 357799999999875322 1223444454443 34555555555544443
|
|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.33 Score=57.48 Aligned_cols=37 Identities=14% Similarity=0.095 Sum_probs=23.4
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc
Q 001261 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~ 547 (1112)
..+++.|++|+|||... ..+...+... ..+..++++.
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~~~-----~~~~~v~yi~ 173 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEILEN-----NPNAKVVYVS 173 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHHHh-----CCCCcEEEEE
Confidence 45789999999999643 4455555432 1244566653
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >TIGR00708 cobA cob(I)alamin adenosyltransferase | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.24 Score=50.65 Aligned_cols=52 Identities=13% Similarity=0.290 Sum_probs=41.3
Q ss_pred CCceEEEeccchhhhccCCh--hHHHHHHHhcCCCCcEEEEeccccHHHHHHHH
Q 001261 616 RRVTYLVMDEADRMFDMGFE--PQITRIVQNIRPDRQTVLFSATFPRQVEILAR 667 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~gf~--~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~ 667 (1112)
..+++|||||+-..++.|+. ..+..++...++...+|++.-.+|+.+..++.
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCc
Confidence 56899999999988888854 46777888888888888888888888766553
|
Alternate name: corrinoid adenosyltransferase. |
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.28 Score=59.80 Aligned_cols=49 Identities=20% Similarity=0.306 Sum_probs=30.8
Q ss_pred cCCceEEEeccchhhhccC-ChhHHHHHHHhcCC-CCcEEEEeccccHHHH
Q 001261 615 LRRVTYLVMDEADRMFDMG-FEPQITRIVQNIRP-DRQTVLFSATFPRQVE 663 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~g-f~~~i~~il~~~~~-~~q~il~SAT~~~~~~ 663 (1112)
+.++++||||++|.+.... ....+..++..+.. +.++|+.|-..|..+.
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~ 425 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLV 425 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhh
Confidence 3457899999999875432 23345556655544 4677776666665543
|
|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.3 Score=59.30 Aligned_cols=92 Identities=17% Similarity=0.193 Sum_probs=72.4
Q ss_pred chhHHHHHHHHHhhhc-CCeEEEEeCCHHHHHHHHHHHHh-cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCccc
Q 001261 698 SDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLK-HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA 775 (1112)
Q Consensus 698 ~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~-~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~ 775 (1112)
..|....+.++..... ++++||.+|+..-+.+++..|.. .+..+..+||+++..+|..+.....+|...|+|+|..+-
T Consensus 8 sGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsal 87 (505)
T TIGR00595 8 SGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSAL 87 (505)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHH
Confidence 4455555555544433 45899999999999999999976 477899999999999999999999999999999996543
Q ss_pred ccCCCCCccEEEEeC
Q 001261 776 RGLDVKELELVINFD 790 (1112)
Q Consensus 776 ~GlDi~~v~~VI~~d 790 (1112)
. +-+.++.+||.-.
T Consensus 88 f-~p~~~l~lIIVDE 101 (505)
T TIGR00595 88 F-LPFKNLGLIIVDE 101 (505)
T ss_pred c-CcccCCCEEEEEC
Confidence 2 4677888888643
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.89 Score=51.72 Aligned_cols=134 Identities=20% Similarity=0.261 Sum_probs=63.1
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc-cc-hhHHHHHHHHHHHHhhhcCceEEEEeCCCChH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA-PT-RELVQQIHSDIRKFAKVMGVRCVPVYGGSGVA 581 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~-Pt-reLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~ 581 (1112)
+.-++++|++|+|||+....-+... .. .+..++++. .+ +..+.+ .+..+....++.++....+....
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l-~~-------~g~~V~Li~~D~~r~~a~e---ql~~~a~~~~i~~~~~~~~~dpa 182 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKY-KA-------QGKKVLLAAGDTFRAAAIE---QLQVWGERVGVPVIAQKEGADPA 182 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH-Hh-------cCCeEEEEecCccchhhHH---HHHHHHHHcCceEEEeCCCCCHH
Confidence 4457788999999998644333322 21 244555554 43 433322 23333444455554432222211
Q ss_pred HHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhc-cCChhHHHHHHHhc------CCCCcEEEE
Q 001261 582 QQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQNI------RPDRQTVLF 654 (1112)
Q Consensus 582 ~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~-~gf~~~i~~il~~~------~~~~q~il~ 654 (1112)
. ...+.+.. ....++++||||=+-++.. ......+..+...+ .+..-++++
T Consensus 183 ~-----------------~v~~~l~~-----~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl 240 (318)
T PRK10416 183 S-----------------VAFDAIQA-----AKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVL 240 (318)
T ss_pred H-----------------HHHHHHHH-----HHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEE
Confidence 0 00111110 1124467777777766432 11223344443322 244457888
Q ss_pred eccccHHHHHHHHHhc
Q 001261 655 SATFPRQVEILARKVL 670 (1112)
Q Consensus 655 SAT~~~~~~~l~~~~~ 670 (1112)
+||........+..+.
T Consensus 241 ~a~~g~~~~~~a~~f~ 256 (318)
T PRK10416 241 DATTGQNALSQAKAFH 256 (318)
T ss_pred ECCCChHHHHHHHHHH
Confidence 9997654433444443
|
|
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.3 Score=55.55 Aligned_cols=36 Identities=25% Similarity=0.361 Sum_probs=22.7
Q ss_pred ceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccc
Q 001261 618 VTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 618 i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
=.+|+|||+||+-- .+...++-++ .+..++++.||-
T Consensus 105 ~tiLflDEIHRfnK----~QQD~lLp~v-E~G~iilIGATT 140 (436)
T COG2256 105 RTILFLDEIHRFNK----AQQDALLPHV-ENGTIILIGATT 140 (436)
T ss_pred ceEEEEehhhhcCh----hhhhhhhhhh-cCCeEEEEeccC
Confidence 36899999999532 2223333333 345688888984
|
|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.56 Score=58.68 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=16.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHh
Q 001261 507 CIGVAKTGSGKTLAFVLPMLRHIK 530 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~ 530 (1112)
++|.|+||+|||++. ..++..|.
T Consensus 784 LYIyG~PGTGKTATV-K~VLrELq 806 (1164)
T PTZ00112 784 LYISGMPGTGKTATV-YSVIQLLQ 806 (1164)
T ss_pred EEEECCCCCCHHHHH-HHHHHHHH
Confidence 358999999999764 34455543
|
|
| >PRK08939 primosomal protein DnaI; Reviewed | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.55 Score=53.15 Aligned_cols=49 Identities=14% Similarity=0.095 Sum_probs=27.5
Q ss_pred cCCceEEEeccchhh--hccCChhHHHHHHHhc-CCCCcEEEEeccccHHHH
Q 001261 615 LRRVTYLVMDEADRM--FDMGFEPQITRIVQNI-RPDRQTVLFSATFPRQVE 663 (1112)
Q Consensus 615 l~~i~~vViDEah~~--~~~gf~~~i~~il~~~-~~~~q~il~SAT~~~~~~ 663 (1112)
+..+.+||||+.... .+|.....+..|+... .....||+.|--.+..+.
T Consensus 215 l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~ 266 (306)
T PRK08939 215 VKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELE 266 (306)
T ss_pred hcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHH
Confidence 456889999999843 2222112334455543 345567776666544443
|
|
| >TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.48 Score=52.47 Aligned_cols=28 Identities=29% Similarity=0.285 Sum_probs=23.1
Q ss_pred HHHHHHHHcCCCEEEEcCCCChHHHHHH
Q 001261 495 AQALPVIMSGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 495 ~~ai~~il~g~dvii~a~TGsGKT~~~l 522 (1112)
..++.++..|..+++.|++|+|||..+.
T Consensus 12 ~~~l~~l~~g~~vLL~G~~GtGKT~lA~ 39 (262)
T TIGR02640 12 SRALRYLKSGYPVHLRGPAGTGKTTLAM 39 (262)
T ss_pred HHHHHHHhcCCeEEEEcCCCCCHHHHHH
Confidence 4556677789999999999999997654
|
Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728). |
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.31 Score=56.03 Aligned_cols=39 Identities=10% Similarity=0.238 Sum_probs=24.0
Q ss_pred CCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEe
Q 001261 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~S 655 (1112)
....+|||||+|.|... ....+..++...+....+|+++
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEEEe
Confidence 45679999999987432 2334555666555555554433
|
|
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.62 Score=57.67 Aligned_cols=19 Identities=26% Similarity=0.160 Sum_probs=15.2
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 001261 507 CIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~ 525 (1112)
+|+.|+.|+|||+++.+.+
T Consensus 41 yLf~Gp~GvGKTTlAr~lA 59 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLLA 59 (647)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999998655443
|
|
| >TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.34 Score=65.30 Aligned_cols=125 Identities=15% Similarity=0.099 Sum_probs=81.2
Q ss_pred ChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCc
Q 001261 490 PMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGV 569 (1112)
Q Consensus 490 pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i 569 (1112)
.|+-|.++|. ..+.+++|.|.-|||||.+.+--++..+... ..-..+|+|+=|+..|..+...+...+...--
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-----~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~ 74 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG-----VDIDRLLVVTFTNAAAREMKERIEEALQKALQ 74 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC-----CCHhhEEEEeccHHHHHHHHHHHHHHHHHHHh
Confidence 5889999997 4688999999999999999888888777643 11235899999999999888888775432110
Q ss_pred eEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchh
Q 001261 570 RCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADR 628 (1112)
Q Consensus 570 ~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~ 628 (1112)
. ... .......+..-...-|+|...|+..+........+|+ -.+=|+||...
T Consensus 75 ~----~p~--~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ld-P~F~i~de~e~ 126 (1232)
T TIGR02785 75 Q----EPN--SKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLD-PSFRILTDTEQ 126 (1232)
T ss_pred c----Cch--hHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCC-CCceeCCHHHH
Confidence 0 000 0111122222235678998888765555443333332 24556888774
|
AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species. |
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.22 Score=53.52 Aligned_cols=48 Identities=17% Similarity=0.315 Sum_probs=30.7
Q ss_pred cCCceEEEeccchhhhccC-ChhHHHHHHHhcC-CCCcEEEEeccccHHH
Q 001261 615 LRRVTYLVMDEADRMFDMG-FEPQITRIVQNIR-PDRQTVLFSATFPRQV 662 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~g-f~~~i~~il~~~~-~~~q~il~SAT~~~~~ 662 (1112)
+..+++||||.+|.+.... ....+..++..+. .+.++|+.|...|..+
T Consensus 95 ~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 95 LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 4568899999999876432 2344555555553 4567777776776654
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.29 Score=63.34 Aligned_cols=95 Identities=12% Similarity=0.176 Sum_probs=73.6
Q ss_pred cchhHHHHH-HHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEec
Q 001261 697 ESDRFLRLL-ELLGEWYEKGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT 771 (1112)
Q Consensus 697 ~~~k~~~ll-~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT 771 (1112)
...|....+ .++.....+.+++|.+||..-|.+.+..|... ++.+..++|..+..++..++..+.+|..+|||+|
T Consensus 482 GsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGT 561 (926)
T TIGR00580 482 GFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGT 561 (926)
T ss_pred CccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEch
Confidence 345554333 33333344568999999999999998887753 6778899999999999999999999999999999
Q ss_pred C-cccccCCCCCccEEEEeCC
Q 001261 772 S-VAARGLDVKELELVINFDA 791 (1112)
Q Consensus 772 ~-v~~~GlDi~~v~~VI~~d~ 791 (1112)
. .+...+.+.++.+||.-..
T Consensus 562 p~ll~~~v~f~~L~llVIDEa 582 (926)
T TIGR00580 562 HKLLQKDVKFKDLGLLIIDEE 582 (926)
T ss_pred HHHhhCCCCcccCCEEEeecc
Confidence 7 4445688889999886433
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.11 Score=60.26 Aligned_cols=43 Identities=23% Similarity=0.529 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEE
Q 001261 522 VLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPV 574 (1112)
Q Consensus 522 llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~ 574 (1112)
|+-++.|+.. .+-.|||.-| |.+.+.+.+++|+...|+.+-.+
T Consensus 496 clrl~r~F~h-------knHLClVFE~---LslNLRevLKKyG~nvGL~ikaV 538 (752)
T KOG0670|consen 496 CLRLFRHFKH-------KNHLCLVFEP---LSLNLREVLKKYGRNVGLHIKAV 538 (752)
T ss_pred HHHHHHHhhh-------cceeEEEehh---hhchHHHHHHHhCcccceeehHH
Confidence 4555666544 2456777767 67777888888887777765443
|
|
| >TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.29 Score=53.34 Aligned_cols=52 Identities=17% Similarity=0.254 Sum_probs=35.5
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
.|.-+++.|++|+|||+..+..++..+. .|..+|+++ +.+-..|+.+.+..+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~--------~ge~~lyvs-~ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ--------MGEPGIYVA-LEEHPVQVRRNMAQF 71 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH--------cCCcEEEEE-eeCCHHHHHHHHHHh
Confidence 3567888999999999866665665543 256677776 445556666666554
|
Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga. |
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.62 Score=51.60 Aligned_cols=18 Identities=28% Similarity=0.200 Sum_probs=15.1
Q ss_pred CCEEEEcCCCChHHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~l 522 (1112)
.++|+.||+|+|||..+-
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 468999999999997543
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >PRK08769 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.7 Score=52.46 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=29.7
Q ss_pred CCChHHHHHHHHHHH----cCC---CEEEEcCCCChHHHHHHHHHHHHHh
Q 001261 488 EKPMPIQAQALPVIM----SGR---DCIGVAKTGSGKTLAFVLPMLRHIK 530 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il----~g~---dvii~a~TGsGKT~~~llp~l~~l~ 530 (1112)
..++|+|..++..+. .|+ -+|+.|+.|+||+..+.. +...+.
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~-lA~~Ll 51 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALA-LAEHVL 51 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH-HHHHHh
Confidence 467889998888766 343 488999999999975443 333443
|
|
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.89 Score=55.84 Aligned_cols=43 Identities=19% Similarity=0.324 Sum_probs=25.3
Q ss_pred CCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccH
Q 001261 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPR 660 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~ 660 (1112)
..+.++||||+|+|....+ ..+.+++...+... +++|.+|-+.
T Consensus 117 gk~KV~IIDEVh~LS~~A~-NALLKtLEEPP~~v-~FILaTtd~~ 159 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSF-NALLKTLEEPPEHV-KFLFATTDPQ 159 (702)
T ss_pred CCcEEEEEechHhcCHHHH-HHHHHHHhcCCCCc-EEEEEECChH
Confidence 4578999999998754333 34555555544444 3444445433
|
|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.51 Score=58.90 Aligned_cols=92 Identities=21% Similarity=0.144 Sum_probs=76.1
Q ss_pred cchhHHHHHHHHHhhhc-CCeEEEEeCCHHHHHHHHHHHHhc-C-CCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc
Q 001261 697 ESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKH-G-YPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV 773 (1112)
Q Consensus 697 ~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~-g-~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v 773 (1112)
.+.|....+.++..... +.++||.++.+..+..+...|... | ..+..+|++++..+|........+|..+|+|.|-.
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRS 249 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRS 249 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcce
Confidence 35677778888777665 448999999999999999999864 4 67999999999999999999999999999999965
Q ss_pred ccccCCCCCccEEEEe
Q 001261 774 AARGLDVKELELVINF 789 (1112)
Q Consensus 774 ~~~GlDi~~v~~VI~~ 789 (1112)
+.- +-++++.+||..
T Consensus 250 AvF-aP~~~LgLIIvd 264 (665)
T PRK14873 250 AVF-APVEDLGLVAIW 264 (665)
T ss_pred eEE-eccCCCCEEEEE
Confidence 432 456777888763
|
|
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.91 Score=50.32 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=21.9
Q ss_pred ChHHHHHHHHHHH----cCC-CEEEEcCCCChHHHHHH
Q 001261 490 PMPIQAQALPVIM----SGR-DCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 490 pt~iQ~~ai~~il----~g~-dvii~a~TGsGKT~~~l 522 (1112)
+++.+.+++..+. .+. .++++|++|+|||+.+.
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 4455556655543 333 57889999999997544
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >PRK13833 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.29 Score=55.51 Aligned_cols=64 Identities=20% Similarity=0.162 Sum_probs=40.5
Q ss_pred HHHCCCCCChHHHHHHHHHHH-cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHH
Q 001261 482 IRKLNYEKPMPIQAQALPVIM-SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553 (1112)
Q Consensus 482 l~~~~~~~pt~iQ~~ai~~il-~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa 553 (1112)
+...|+ +++.|...|-.++ .+.++|++|+||||||+ ++-.++..+...+ .+-+++++=.+.||.
T Consensus 123 lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTT-ll~aL~~~i~~~~-----~~~rivtiEd~~El~ 187 (323)
T PRK13833 123 YVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTT-LANAVIAEIVASA-----PEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHHHhcCC-----CCceEEEecCCcccc
Confidence 334444 4567776665554 56789999999999996 3555666554322 133556666677763
|
|
| >COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.63 Score=48.06 Aligned_cols=90 Identities=20% Similarity=0.145 Sum_probs=55.0
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI 584 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~ 584 (1112)
+=.+++||+.||||...+.-+.++... |.+++|..|-..- .++...+...-|...
T Consensus 5 ~l~~i~gpM~SGKT~eLl~r~~~~~~~--------g~~v~vfkp~iD~-------------R~~~~~V~Sr~G~~~---- 59 (201)
T COG1435 5 WLEFIYGPMFSGKTEELLRRARRYKEA--------GMKVLVFKPAIDT-------------RYGVGKVSSRIGLSS---- 59 (201)
T ss_pred EEEEEEccCcCcchHHHHHHHHHHHHc--------CCeEEEEeccccc-------------ccccceeeeccCCcc----
Confidence 345788999999999766655554332 6678888883211 123333333333322
Q ss_pred HHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhh
Q 001261 585 SELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRM 629 (1112)
Q Consensus 585 ~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~ 629 (1112)
.-++|-++..+.+.+.... ....+.+|.||||+-+
T Consensus 60 ------~A~~i~~~~~i~~~i~~~~----~~~~~~~v~IDEaQF~ 94 (201)
T COG1435 60 ------EAVVIPSDTDIFDEIAALH----EKPPVDCVLIDEAQFF 94 (201)
T ss_pred ------cceecCChHHHHHHHHhcc----cCCCcCEEEEehhHhC
Confidence 3456667777777776532 1122789999999963
|
|
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.7 Score=57.14 Aligned_cols=40 Identities=8% Similarity=0.114 Sum_probs=24.0
Q ss_pred cCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEe
Q 001261 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~S 655 (1112)
+..+.+|||||+|.|.... ...+.+++...+....+|+.+
T Consensus 117 ~gk~KVIIIDEad~Ls~~A-~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHHH-HHHHHHHHHhCCCCcEEEEEe
Confidence 3567899999999865422 223445555544555455444
|
|
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.53 Score=55.94 Aligned_cols=19 Identities=26% Similarity=0.167 Sum_probs=15.3
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 001261 507 CIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~ 525 (1112)
+|++||.|+|||.++.+.+
T Consensus 43 ~Lf~GP~GtGKTTlAriLA 61 (484)
T PRK14956 43 YIFFGPRGVGKTTIARILA 61 (484)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6999999999998655443
|
|
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.36 Score=53.76 Aligned_cols=39 Identities=28% Similarity=0.145 Sum_probs=25.7
Q ss_pred HcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc
Q 001261 502 MSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547 (1112)
Q Consensus 502 l~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~ 547 (1112)
..|.-+++.|++|+|||+..+..++..+.. .+..|+++.
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~-------~g~~vl~iS 66 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQ-------HGVRVGTIS 66 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHh-------cCceEEEEE
Confidence 456778899999999997555444433222 255677775
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.35 Score=56.83 Aligned_cols=33 Identities=21% Similarity=0.211 Sum_probs=26.9
Q ss_pred ChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHH
Q 001261 490 PMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 490 pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~l 522 (1112)
|-......+..+..++++|+.|++|+|||..+.
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 445566777788899999999999999997654
|
|
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.64 Score=55.72 Aligned_cols=44 Identities=11% Similarity=0.271 Sum_probs=25.1
Q ss_pred cCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccH
Q 001261 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPR 660 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~ 660 (1112)
...+.++||||+|.|....| ..+.+.+..-++...+ +|.+|-+.
T Consensus 114 ~~~~KVvIIDEah~Ls~~A~-NaLLK~LEePp~~v~f-Ilatte~~ 157 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSAF-NALLKTLEEPAPHVKF-ILATTEVK 157 (491)
T ss_pred cCCceEEEEeChHhCCHHHH-HHHHHHHhCCCCCeEE-EEEeCChH
Confidence 45789999999998764332 2344444444444333 34445333
|
|
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.79 Score=54.43 Aligned_cols=37 Identities=27% Similarity=0.345 Sum_probs=22.7
Q ss_pred CceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccc
Q 001261 617 RVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
...+|||||+|+|.. .+...++..+.. ..++++.+|.
T Consensus 92 ~~~vL~IDEi~~l~~----~~q~~LL~~le~-~~iilI~att 128 (413)
T PRK13342 92 RRTILFIDEIHRFNK----AQQDALLPHVED-GTITLIGATT 128 (413)
T ss_pred CceEEEEechhhhCH----HHHHHHHHHhhc-CcEEEEEeCC
Confidence 457899999998742 233344444433 4566776664
|
|
| >PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.42 Score=50.78 Aligned_cols=17 Identities=24% Similarity=0.120 Sum_probs=14.3
Q ss_pred CEEEEcCCCChHHHHHH
Q 001261 506 DCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~l 522 (1112)
++|+.||.|+|||+.+.
T Consensus 52 h~lf~GPPG~GKTTLA~ 68 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLAR 68 (233)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred eEEEECCCccchhHHHH
Confidence 58999999999997433
|
Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B. |
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.33 Score=47.03 Aligned_cols=16 Identities=31% Similarity=0.546 Sum_probs=13.2
Q ss_pred ceEEEeccchhhhccC
Q 001261 618 VTYLVMDEADRMFDMG 633 (1112)
Q Consensus 618 i~~vViDEah~~~~~g 633 (1112)
..+|+|||+|.+....
T Consensus 59 ~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKS 74 (132)
T ss_dssp SEEEEEETGGGTSHHC
T ss_pred ceeeeeccchhccccc
Confidence 5799999999887654
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >PRK13894 conjugal transfer ATPase TrbB; Provisional | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.35 Score=54.97 Aligned_cols=65 Identities=22% Similarity=0.251 Sum_probs=41.7
Q ss_pred HHHHHCCCCCChHHHHHHHHH-HHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhH
Q 001261 480 ETIRKLNYEKPMPIQAQALPV-IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTREL 552 (1112)
Q Consensus 480 ~~l~~~~~~~pt~iQ~~ai~~-il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreL 552 (1112)
..|...|+ +++.|...|.. +..+..+|++|+||||||+ ++..++..+...+ ...++++|-.+.||
T Consensus 125 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~aL~~~~~~~~-----~~~rivtIEd~~El 190 (319)
T PRK13894 125 DQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTT-LVNAIINEMVIQD-----PTERVFIIEDTGEI 190 (319)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHhhhhcC-----CCceEEEEcCCCcc
Confidence 34444554 45677777765 4467789999999999995 4555655543211 23456677777776
|
|
| >PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.69 Score=58.37 Aligned_cols=40 Identities=23% Similarity=0.283 Sum_probs=24.5
Q ss_pred CceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHH
Q 001261 617 RVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQ 661 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~ 661 (1112)
...+|||||+|+|.. .+...++..+ ...+++++++|.++.
T Consensus 109 ~~~IL~IDEIh~Ln~----~qQdaLL~~l-E~g~IiLI~aTTenp 148 (725)
T PRK13341 109 KRTILFIDEVHRFNK----AQQDALLPWV-ENGTITLIGATTENP 148 (725)
T ss_pred CceEEEEeChhhCCH----HHHHHHHHHh-cCceEEEEEecCCCh
Confidence 456899999998642 1223333333 345678888875543
|
|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.57 Score=55.25 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=18.9
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHhc
Q 001261 505 RDCIGVAKTGSGKTLAFVLPMLRHIKD 531 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~~ 531 (1112)
..+++.|++|+|||.+ +..++..+..
T Consensus 56 ~~~lI~G~~GtGKT~l-~~~v~~~l~~ 81 (394)
T PRK00411 56 LNVLIYGPPGTGKTTT-VKKVFEELEE 81 (394)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHHH
Confidence 5699999999999975 4445555443
|
|
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=92.52 E-value=0.87 Score=57.70 Aligned_cols=43 Identities=14% Similarity=0.165 Sum_probs=24.1
Q ss_pred CCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccH
Q 001261 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPR 660 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~ 660 (1112)
..+.+|||||||+|... -...+.+++..-+....+|+ ..|-+.
T Consensus 118 gk~KViIIDEAh~LT~e-AqNALLKtLEEPP~~vrFIL-aTTe~~ 160 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRS-SFNALLKTLEEPPEHVKFLL-ATTDPQ 160 (944)
T ss_pred CCcEEEEEechHhcCHH-HHHHHHHHHhccCCCeEEEE-ECCCch
Confidence 35789999999998532 22344444544444443444 344333
|
|
| >TIGR03689 pup_AAA proteasome ATPase | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.69 Score=55.71 Aligned_cols=59 Identities=22% Similarity=0.263 Sum_probs=31.7
Q ss_pred ccccccCC-CCHHHHHHHHH--CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHH
Q 001261 466 IKTWHQTG-LTSKIMETIRK--LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRH 528 (1112)
Q Consensus 466 i~~~~~~~-L~~~l~~~l~~--~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~ 528 (1112)
-.+|.+++ |...+...... +.+..|-.+....++ ..+.+|+.||+|+|||+. +-.+...
T Consensus 178 ~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~---~p~GILLyGPPGTGKT~L-AKAlA~e 239 (512)
T TIGR03689 178 DVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLK---PPKGVLLYGPPGCGKTLI-AKAVANS 239 (512)
T ss_pred CCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCC---CCcceEEECCCCCcHHHH-HHHHHHh
Confidence 35788876 55544333222 222222222222221 246799999999999974 3344443
|
In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity. |
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.6 Score=54.39 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=18.6
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHh
Q 001261 505 RDCIGVAKTGSGKTLAFVLPMLRHIK 530 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~ 530 (1112)
..+++.|++|+|||.+ +..++.++.
T Consensus 41 ~~i~I~G~~GtGKT~l-~~~~~~~l~ 65 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAV-TKYVMKELE 65 (365)
T ss_pred CcEEEECCCCCCHHHH-HHHHHHHHH
Confidence 5799999999999964 445555543
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. |
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=92.38 E-value=0.63 Score=56.43 Aligned_cols=18 Identities=22% Similarity=0.176 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCChHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~ 521 (1112)
.+.+|+.||+|+|||..+
T Consensus 39 ~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999753
|
|
| >PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical | Back alignment and domain information |
|---|
Probab=92.38 E-value=0.35 Score=52.23 Aligned_cols=53 Identities=21% Similarity=0.269 Sum_probs=32.7
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
.|.-+++.|++|+|||+..+..++..+.. .|..|++++ +.+-..++.+.+..+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~-------~ge~vlyvs-~ee~~~~l~~~~~s~ 70 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKN-------FGEKVLYVS-FEEPPEELIENMKSF 70 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH-------HT--EEEEE-SSS-HHHHHHHHHTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhh-------cCCcEEEEE-ecCCHHHHHHHHHHc
Confidence 34678899999999998666666666543 044577776 334445555555544
|
More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C .... |
| >COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.87 Score=46.63 Aligned_cols=52 Identities=12% Similarity=0.254 Sum_probs=40.0
Q ss_pred CceEEEeccchhhhccCCh--hHHHHHHHhcCCCCcEEEEeccccHHHHHHHHH
Q 001261 617 RVTYLVMDEADRMFDMGFE--PQITRIVQNIRPDRQTVLFSATFPRQVEILARK 668 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~gf~--~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~ 668 (1112)
.+++|||||.-.++..|+. ..+..++...|....+|++.-.+|+.+..++..
T Consensus 122 ~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADl 175 (198)
T COG2109 122 KYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADL 175 (198)
T ss_pred CCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHH
Confidence 5899999999998888854 457777777777777777777788887766544
|
|
| >PF13173 AAA_14: AAA domain | Back alignment and domain information |
|---|
Probab=92.32 E-value=1 Score=43.81 Aligned_cols=38 Identities=21% Similarity=0.395 Sum_probs=25.6
Q ss_pred CceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEecc
Q 001261 617 RVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSAT 657 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT 657 (1112)
.-.+|||||+|.+- ++...+..+.... ++.++|+++-.
T Consensus 61 ~~~~i~iDEiq~~~--~~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP--DWEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhc--cHHHHHHHHHHhc-cCceEEEEccc
Confidence 35689999999985 3566666666654 45566655444
|
|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.99 Score=52.36 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=18.5
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhc
Q 001261 506 DCIGVAKTGSGKTLAFVLPMLRHIKD 531 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~ 531 (1112)
++++.|+||+|||.+ +..++..+..
T Consensus 44 n~~iyG~~GTGKT~~-~~~v~~~l~~ 68 (366)
T COG1474 44 NIIIYGPTGTGKTAT-VKFVMEELEE 68 (366)
T ss_pred cEEEECCCCCCHhHH-HHHHHHHHHh
Confidence 589999999999975 4455555544
|
|
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.82 Score=55.23 Aligned_cols=19 Identities=21% Similarity=0.174 Sum_probs=15.7
Q ss_pred CEEEEcCCCChHHHHHHHH
Q 001261 506 DCIGVAKTGSGKTLAFVLP 524 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp 524 (1112)
.+|++||.|+|||.++.+.
T Consensus 45 a~Lf~Gp~G~GKTT~Aril 63 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARII 63 (507)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 6899999999999865543
|
|
| >PRK09111 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=92.13 E-value=1 Score=55.57 Aligned_cols=41 Identities=10% Similarity=0.159 Sum_probs=24.9
Q ss_pred ccCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEe
Q 001261 614 NLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 614 ~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~S 655 (1112)
.+..+.+|||||+|.|.... ...+.+.+...++...+|+.+
T Consensus 129 ~~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 129 VSARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred hcCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 34578899999999875432 233444455545555455543
|
|
| >PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP | Back alignment and domain information |
|---|
Probab=92.09 E-value=1.3 Score=51.34 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=29.0
Q ss_pred CCceEEEeccchhhhccCChhHHHHHHHhc-CCCCcEEEEeccccHHH
Q 001261 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNI-RPDRQTVLFSATFPRQV 662 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~gf~~~i~~il~~~-~~~~q~il~SAT~~~~~ 662 (1112)
....+|++||.|- .|.+-...+..++..+ ....-+|.+|-+.|..+
T Consensus 126 ~~~~lLcfDEF~V-~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 126 KESRLLCFDEFQV-TDIADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred hcCCEEEEeeeec-cchhHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 3467999999993 2333344555565554 44556777788877653
|
AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding |
| >TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB | Back alignment and domain information |
|---|
Probab=91.96 E-value=0.5 Score=53.31 Aligned_cols=66 Identities=24% Similarity=0.279 Sum_probs=40.1
Q ss_pred HHHHHCCCCCChHHHHHHHHH-HHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHH
Q 001261 480 ETIRKLNYEKPMPIQAQALPV-IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553 (1112)
Q Consensus 480 ~~l~~~~~~~pt~iQ~~ai~~-il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa 553 (1112)
..|...|+ +++.|...|-. +..+..+|++|+||||||+. +-.++..+...+ ...+++++=.+.||.
T Consensus 109 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~~-----~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 109 DDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKND-----PTDRVVIIEDTRELQ 175 (299)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhccC-----CCceEEEECCchhhc
Confidence 33444453 34555555554 44567899999999999964 455555544321 133566666777763
|
The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA. |
| >PRK14957 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=91.92 E-value=1.3 Score=53.82 Aligned_cols=40 Identities=10% Similarity=0.095 Sum_probs=24.0
Q ss_pred cCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEe
Q 001261 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~S 655 (1112)
.....+|||||||+|.... ...+.+++...+....+|+.+
T Consensus 117 ~g~~kViIIDEa~~ls~~a-~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQS-FNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 3467899999999976432 234445555544444444433
|
|
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Probab=91.91 E-value=1.2 Score=50.77 Aligned_cols=40 Identities=18% Similarity=0.280 Sum_probs=23.5
Q ss_pred CceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccc
Q 001261 617 RVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
...+|||||+|.|.... ...+..++...+.... ++|+++.
T Consensus 99 ~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~-~il~~n~ 138 (319)
T PLN03025 99 RHKIVILDEADSMTSGA-QQALRRTMEIYSNTTR-FALACNT 138 (319)
T ss_pred CeEEEEEechhhcCHHH-HHHHHHHHhcccCCce-EEEEeCC
Confidence 47899999999976432 3344555554444443 4444443
|
|
| >PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=91.91 E-value=0.82 Score=52.79 Aligned_cols=40 Identities=18% Similarity=0.168 Sum_probs=24.3
Q ss_pred cCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEe
Q 001261 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~S 655 (1112)
...+.+|||||||.|-... ...+.+++..-+....+|++|
T Consensus 139 ~g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILIS 178 (351)
T ss_pred cCCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 3467899999999975322 334555555544444445554
|
|
| >PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot) | Back alignment and domain information |
|---|
Probab=91.87 E-value=0.52 Score=49.62 Aligned_cols=51 Identities=22% Similarity=0.350 Sum_probs=25.4
Q ss_pred CceEEEeccchhhhccCCh-----hHHHHHHHhcCCC-CcEEEEeccccHHHHHHHHH
Q 001261 617 RVTYLVMDEADRMFDMGFE-----PQITRIVQNIRPD-RQTVLFSATFPRQVEILARK 668 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~gf~-----~~i~~il~~~~~~-~q~il~SAT~~~~~~~l~~~ 668 (1112)
.-++|||||||.++..... +.+...+...+.. ..++++|-.+ ..+...++.
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~-~~id~~ir~ 135 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSP-SQIDKFIRD 135 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-G-GGB-HHHHC
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCH-HHHhHHHHH
Confidence 4579999999988765433 2333445544444 3455555554 444444443
|
Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B. |
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=91.81 E-value=1.5 Score=52.43 Aligned_cols=49 Identities=14% Similarity=0.331 Sum_probs=28.3
Q ss_pred CceEEEeccchhhhccC-ChhHHHHHHHhcCC-CCcEEEEeccccHHHHHH
Q 001261 617 RVTYLVMDEADRMFDMG-FEPQITRIVQNIRP-DRQTVLFSATFPRQVEIL 665 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~g-f~~~i~~il~~~~~-~~q~il~SAT~~~~~~~l 665 (1112)
.+++|||||+|.+.+.. ....+..++..+.. ..++|+.|-..|..+..+
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l 244 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEF 244 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHH
Confidence 46799999999876432 22334445544433 345555555566555444
|
|
| >PRK07471 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=91.79 E-value=0.9 Score=52.75 Aligned_cols=43 Identities=14% Similarity=0.154 Sum_probs=24.6
Q ss_pred ccCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEecc
Q 001261 614 NLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSAT 657 (1112)
Q Consensus 614 ~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT 657 (1112)
......+|||||+|.|-. .-...+.+++...+....+|++|..
T Consensus 138 ~~~~~kVviIDead~m~~-~aanaLLK~LEepp~~~~~IL~t~~ 180 (365)
T PRK07471 138 AEGGWRVVIVDTADEMNA-NAANALLKVLEEPPARSLFLLVSHA 180 (365)
T ss_pred ccCCCEEEEEechHhcCH-HHHHHHHHHHhcCCCCeEEEEEECC
Confidence 345678999999998742 2223444445544444444554444
|
|
| >PRK11823 DNA repair protein RadA; Provisional | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.82 Score=54.65 Aligned_cols=51 Identities=20% Similarity=0.193 Sum_probs=31.4
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
|.-+++.|++|+|||+..+..+... .. .+.++|++.- .+-..|+...+..+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~-a~-------~g~~vlYvs~-Ees~~qi~~ra~rl 130 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARL-AA-------AGGKVLYVSG-EESASQIKLRAERL 130 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH-Hh-------cCCeEEEEEc-cccHHHHHHHHHHc
Confidence 4567888999999997544444433 22 2456788764 44456665554443
|
|
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=91.73 E-value=1 Score=52.51 Aligned_cols=17 Identities=29% Similarity=0.243 Sum_probs=14.1
Q ss_pred EEEEcCCCChHHHHHHH
Q 001261 507 CIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 507 vii~a~TGsGKT~~~ll 523 (1112)
+|+.||.|+|||..+.+
T Consensus 41 ~L~~Gp~G~GKTtla~~ 57 (363)
T PRK14961 41 WLLSGTRGVGKTTIARL 57 (363)
T ss_pred EEEecCCCCCHHHHHHH
Confidence 68999999999976544
|
|
| >cd00984 DnaB_C DnaB helicase C terminal domain | Back alignment and domain information |
|---|
Probab=91.72 E-value=0.33 Score=52.92 Aligned_cols=47 Identities=23% Similarity=0.218 Sum_probs=29.2
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc---cchhHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA---PTRELVQQI 556 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~---PtreLa~Q~ 556 (1112)
.|.-+++.|++|+|||...+-.++..+.. .+..+++++ |..+++..+
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~-------~g~~vly~s~E~~~~~~~~r~ 61 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKK-------QGKPVLFFSLEMSKEQLLQRL 61 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCceEEEeCCCCHHHHHHHH
Confidence 45668889999999996544444443332 155677777 444454443
|
The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. |
| >COG4626 Phage terminase-like protein, large subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.71 E-value=1.1 Score=53.36 Aligned_cols=148 Identities=14% Similarity=0.157 Sum_probs=83.5
Q ss_pred CChHHHHHHHHHHHc------C----CCEEEEcCCCChHHHHHH-HHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHH
Q 001261 489 KPMPIQAQALPVIMS------G----RDCIGVAKTGSGKTLAFV-LPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIH 557 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~------g----~dvii~a~TGsGKT~~~l-lp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~ 557 (1112)
.+-|+|.-++..|+- | +-.+|..+-+-|||..+. +.+...+... ..+....|++|+.+-+.+.+
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~-----~~~~~~~i~A~s~~qa~~~F 135 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW-----RSGAGIYILAPSVEQAANSF 135 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh-----hcCCcEEEEeccHHHHHHhh
Confidence 456999999998882 2 236777788889997444 3333333332 34677899999999888888
Q ss_pred HHHHHHhhhcC-ceEEEEeCCCChHHHHHHHhcC-CeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCCh
Q 001261 558 SDIRKFAKVMG-VRCVPVYGGSGVAQQISELKRG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFE 635 (1112)
Q Consensus 558 ~~~~~~~~~~~-i~~~~~~gg~~~~~~~~~l~~~-~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~ 635 (1112)
..++..+.... +... ..+... ..|++.--...+..+..... ..+-.+..+.|+||.|...+.+
T Consensus 136 ~~ar~mv~~~~~l~~~------------~~~q~~s~~i~~~~~~s~ik~~aa~~~-~~Dg~~~~~~I~DEih~f~~~~-- 200 (546)
T COG4626 136 NPARDMVKRDDDLRDL------------CNVQTHSRTITHRKTDSTIKAVAADPN-TVDGLNSVGAIIDELHLFGKQE-- 200 (546)
T ss_pred HHHHHHHHhCcchhhh------------hccccceeEEEecccceeeeeeccCCC-cccCCCcceEEEehhhhhcCHH--
Confidence 88777655433 1100 000100 11222211122233333222 2233467899999999865432
Q ss_pred hHHHHHHHhc--CCCCcEEEEec
Q 001261 636 PQITRIVQNI--RPDRQTVLFSA 656 (1112)
Q Consensus 636 ~~i~~il~~~--~~~~q~il~SA 656 (1112)
..+..+..-+ +++.+++..|.
T Consensus 201 ~~~~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 201 DMYSEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred HHHHHHHhhhccCcCceEEEEec
Confidence 4444444433 45666666554
|
|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=91.70 E-value=1.9 Score=46.77 Aligned_cols=51 Identities=10% Similarity=0.111 Sum_probs=31.3
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
|.-+++.|++|+|||+..+..++..+. +|..|+++.- .+-..++...+..+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~--------~g~~~~y~~~-e~~~~~~~~~~~~~ 75 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALK--------QGKKVYVITT-ENTSKSYLKQMESV 75 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHh--------CCCEEEEEEc-CCCHHHHHHHHHHC
Confidence 456888899999999765555554432 2556777663 23334555555443
|
|
| >PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif | Back alignment and domain information |
|---|
Probab=91.67 E-value=0.4 Score=49.73 Aligned_cols=47 Identities=26% Similarity=0.341 Sum_probs=27.5
Q ss_pred HHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHH
Q 001261 501 IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQI 556 (1112)
Q Consensus 501 il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~ 556 (1112)
+-.+.++++.|++|+|||..+...+...+.. |..|+++ ++.+|...+
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~--------g~~v~f~-~~~~L~~~l 90 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIRK--------GYSVLFI-TASDLLDEL 90 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHHT--------T--EEEE-EHHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhccC--------CcceeEe-ecCceeccc
Confidence 3467889999999999998655444433332 4556664 555665543
|
They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A. |
| >PRK14951 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=91.59 E-value=1.3 Score=54.73 Aligned_cols=44 Identities=14% Similarity=0.293 Sum_probs=24.4
Q ss_pred CCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHH
Q 001261 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQ 661 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~ 661 (1112)
..+.++||||+|+|....|. .+.+++...+....+ +|.+|-+..
T Consensus 123 g~~KV~IIDEvh~Ls~~a~N-aLLKtLEEPP~~~~f-IL~Ttd~~k 166 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFN-AMLKTLEEPPEYLKF-VLATTDPQK 166 (618)
T ss_pred CCceEEEEEChhhCCHHHHH-HHHHhcccCCCCeEE-EEEECCchh
Confidence 46889999999998644332 233334433333334 444454433
|
|
| >PRK14959 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=91.55 E-value=2 Score=52.79 Aligned_cols=20 Identities=20% Similarity=0.102 Sum_probs=16.1
Q ss_pred CEEEEcCCCChHHHHHHHHH
Q 001261 506 DCIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~ 525 (1112)
.+|+.|+.|+|||+++.+.+
T Consensus 40 a~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 47889999999998766544
|
|
| >PRK14969 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=91.47 E-value=0.92 Score=55.41 Aligned_cols=40 Identities=13% Similarity=0.223 Sum_probs=23.8
Q ss_pred cCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEe
Q 001261 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~S 655 (1112)
...+.++||||+|.|....+ ..+.+.+...+....+|+.|
T Consensus 117 ~~~~kVvIIDEad~ls~~a~-naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHHH-HHHHHHHhCCCCCEEEEEEe
Confidence 35678999999998764322 23444455544445444443
|
|
| >PHA03368 DNA packaging terminase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=91.46 E-value=0.98 Score=55.02 Aligned_cols=136 Identities=18% Similarity=0.171 Sum_probs=79.7
Q ss_pred HcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCc--eEEEEeCCCC
Q 001261 502 MSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGV--RCVPVYGGSG 579 (1112)
Q Consensus 502 l~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i--~~~~~~gg~~ 579 (1112)
...+-.++..|=-.|||+... +++..+... -.|-.+++++|.+..+..++.++..++..+.. .+..+.| ..
T Consensus 252 fkqk~tVflVPRR~GKTwivv-~iI~~ll~s-----~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~ 324 (738)
T PHA03368 252 FRQRATVFLVPRRHGKTWFLV-PLIALALAT-----FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ET 324 (738)
T ss_pred hhccceEEEecccCCchhhHH-HHHHHHHHh-----CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cE
Confidence 345667888888999998655 555444321 13778999999999999999999987764311 1111222 11
Q ss_pred hHHHHHHHhcC--CeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhc-CCCCcEEEEec
Q 001261 580 VAQQISELKRG--TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI-RPDRQTVLFSA 656 (1112)
Q Consensus 580 ~~~~~~~l~~~--~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~-~~~~q~il~SA 656 (1112)
+ .-.+..| ..|.++|-. ..+.++ =..+++||||||+-+-+. .+..++-.+ ..+.++|++|.
T Consensus 325 I---~i~f~nG~kstI~FaSar------ntNsiR---GqtfDLLIVDEAqFIk~~----al~~ilp~l~~~n~k~I~ISS 388 (738)
T PHA03368 325 I---SFSFPDGSRSTIVFASSH------NTNGIR---GQDFNLLFVDEANFIRPD----AVQTIMGFLNQTNCKIIFVSS 388 (738)
T ss_pred E---EEEecCCCccEEEEEecc------CCCCcc---CCcccEEEEechhhCCHH----HHHHHHHHHhccCccEEEEec
Confidence 1 0011122 244554210 111111 125789999999987643 333333222 13788999998
Q ss_pred cccH
Q 001261 657 TFPR 660 (1112)
Q Consensus 657 T~~~ 660 (1112)
|-..
T Consensus 389 ~Ns~ 392 (738)
T PHA03368 389 TNTG 392 (738)
T ss_pred CCCC
Confidence 8654
|
|
| >PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA | Back alignment and domain information |
|---|
Probab=91.45 E-value=0.39 Score=58.98 Aligned_cols=70 Identities=13% Similarity=0.177 Sum_probs=49.4
Q ss_pred CChHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHH-HHHHHHhh
Q 001261 489 KPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIH-SDIRKFAK 565 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g--~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~-~~~~~~~~ 565 (1112)
..+|+|.+.+.++-.. +.|+++..+-+|||.+.+..+...+... ...+|++.||..+|..+. ..|..+..
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~-------P~~~l~v~Pt~~~a~~~~~~rl~Pmi~ 88 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQD-------PGPMLYVQPTDDAAKDFSKERLDPMIR 88 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeC-------CCCEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 5679999988887754 5788899999999996555444333322 234689999999999876 34444443
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities []. |
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=91.43 E-value=0.52 Score=59.24 Aligned_cols=63 Identities=22% Similarity=0.344 Sum_probs=53.9
Q ss_pred cCCeEEEEeCCHHHHHHHHHHHHhc----C-CCeee-ecCCCCHHHHHHHHHHhhcCCccEEEecCccc
Q 001261 713 EKGKILIFVHSQEKCDALFRDLLKH----G-YPCLS-LHGAKDQTDRESTISDFKSNVCNLLIATSVAA 775 (1112)
Q Consensus 713 ~~~~vLIF~~s~~~~~~l~~~L~~~----g-~~~~~-ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~ 775 (1112)
.+.+++|.+||..-+.++++.|.+. + +.+.. |||.|+..++..+++.|.+|.++|||+|+.+-
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL 192 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFL 192 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHH
Confidence 4578999999999999999998765 2 44444 99999999999999999999999999997553
|
|
| >PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2 | Back alignment and domain information |
|---|
Probab=91.41 E-value=1.6 Score=44.79 Aligned_cols=140 Identities=18% Similarity=0.205 Sum_probs=65.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHH
Q 001261 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISE 586 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~ 586 (1112)
+.+.--.|=|||++++--+++.+ +.|.+|+|+-=... .-.+.++..+...-++.+.. .|.........
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~--------G~G~rV~ivQFlKg--~~~~GE~~~l~~l~~~~~~~--~g~~f~~~~~~ 73 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAA--------GHGMRVLIVQFLKG--GRYSGELKALKKLPNVEIER--FGKGFVWRMNE 73 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHH--------CTT--EEEEESS----SS--HHHHHHGGGT--EEEE----TT----GGG
T ss_pred EEEEeCCCCCchHHHHHHHHHHH--------hCCCEEEEEEEecC--CCCcCHHHHHHhCCeEEEEE--cCCcccccCCC
Confidence 44556788999999888888763 56788888753322 01112333222211233221 12111000000
Q ss_pred HhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCCh--hHHHHHHHhcCCCCcEEEEeccccHHHHH
Q 001261 587 LKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFE--PQITRIVQNIRPDRQTVLFSATFPRQVEI 664 (1112)
Q Consensus 587 l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~--~~i~~il~~~~~~~q~il~SAT~~~~~~~ 664 (1112)
-. .+ .......+..... ...-..+++|||||+-..++.|+. ..+..++...++..-+|++.-.+|+.+..
T Consensus 74 ~~--~~--~~~~~~~~~~a~~----~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e 145 (172)
T PF02572_consen 74 EE--ED--RAAAREGLEEAKE----AISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIE 145 (172)
T ss_dssp HH--HH--HHHHHHHHHHHHH----HTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHH
T ss_pred cH--HH--HHHHHHHHHHHHH----HHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHH
Confidence 00 00 0000111111111 122356899999999998888865 45777788777777788888888887765
Q ss_pred HH
Q 001261 665 LA 666 (1112)
Q Consensus 665 l~ 666 (1112)
.+
T Consensus 146 ~A 147 (172)
T PF02572_consen 146 AA 147 (172)
T ss_dssp H-
T ss_pred hC
Confidence 54
|
5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A. |
| >TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family | Back alignment and domain information |
|---|
Probab=91.40 E-value=1.3 Score=49.01 Aligned_cols=37 Identities=14% Similarity=0.037 Sum_probs=25.4
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~ 547 (1112)
.|.-++|.|++|+|||+..+..+++.+. .|..+++++
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~--------~Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQAS--------RGNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh--------CCCcEEEEE
Confidence 3566888999999999755544444332 255778877
|
This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles. |
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=91.31 E-value=0.79 Score=55.54 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=16.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHHH
Q 001261 507 CIGVAKTGSGKTLAFVLPMLRHI 529 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l 529 (1112)
+|++||.|+|||+++.+ +...+
T Consensus 39 ~Lf~GppGtGKTTlA~~-lA~~l 60 (504)
T PRK14963 39 YLFSGPRGVGKTTTARL-IAMAV 60 (504)
T ss_pred EEEECCCCCCHHHHHHH-HHHHH
Confidence 59999999999986543 34444
|
|
| >PRK14962 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=91.30 E-value=1.2 Score=53.65 Aligned_cols=17 Identities=29% Similarity=0.311 Sum_probs=14.3
Q ss_pred EEEEcCCCChHHHHHHH
Q 001261 507 CIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 507 vii~a~TGsGKT~~~ll 523 (1112)
+|+.||+|+|||+.+.+
T Consensus 39 ~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 39 YIFAGPRGTGKTTVARI 55 (472)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999976554
|
|
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=91.19 E-value=1.6 Score=55.54 Aligned_cols=44 Identities=11% Similarity=0.258 Sum_probs=27.0
Q ss_pred eEEEeccchhhhccCC----hhHHHHHHHhcCCCCcEEEEeccccHHH
Q 001261 619 TYLVMDEADRMFDMGF----EPQITRIVQNIRPDRQTVLFSATFPRQV 662 (1112)
Q Consensus 619 ~~vViDEah~~~~~gf----~~~i~~il~~~~~~~q~il~SAT~~~~~ 662 (1112)
.+|+|||+|.++..|- ...+..++..+-....+.++.||-++..
T Consensus 280 ~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~ 327 (758)
T PRK11034 280 SILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEF 327 (758)
T ss_pred CEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHH
Confidence 5899999999876542 1233344443333455777777766553
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=91.16 E-value=0.19 Score=52.06 Aligned_cols=42 Identities=14% Similarity=0.357 Sum_probs=29.4
Q ss_pred CCceEEEeccchhhhccCChhHHHHHHHhcCCC-CcEEEEecc
Q 001261 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD-RQTVLFSAT 657 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~-~q~il~SAT 657 (1112)
....++++||...-+|......+..++..+... .++|+.|--
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 456899999999888877666676666665433 556665544
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=91.15 E-value=0.84 Score=55.39 Aligned_cols=39 Identities=13% Similarity=0.243 Sum_probs=24.4
Q ss_pred CCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEe
Q 001261 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~S 655 (1112)
..+.++||||+|+|....| ..+.+++...++...+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 3578999999998764333 33445555555555444433
|
|
| >PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold | Back alignment and domain information |
|---|
Probab=91.13 E-value=0.5 Score=54.76 Aligned_cols=29 Identities=31% Similarity=0.471 Sum_probs=23.2
Q ss_pred HHHHHHHHHcCCCEEEEcCCCChHHHHHH
Q 001261 494 QAQALPVIMSGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 494 Q~~ai~~il~g~dvii~a~TGsGKT~~~l 522 (1112)
+...|+.-+.+++.||.|.||+|||.+..
T Consensus 9 ~~v~l~~~~~NRHGLIaGATGTGKTvTLq 37 (502)
T PF05872_consen 9 APVYLPLKMANRHGLIAGATGTGKTVTLQ 37 (502)
T ss_pred CceecChhhccccceeeccCCCCceehHH
Confidence 34456777889999999999999997643
|
This family is restricted to bacterial proteins, none of which have currently been characterised. |
| >COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=91.06 E-value=0.61 Score=53.23 Aligned_cols=27 Identities=19% Similarity=0.121 Sum_probs=18.8
Q ss_pred CCC-EEEEcCCCChHHHHHHHHHHHHHhc
Q 001261 504 GRD-CIGVAKTGSGKTLAFVLPMLRHIKD 531 (1112)
Q Consensus 504 g~d-vii~a~TGsGKT~~~llp~l~~l~~ 531 (1112)
... +|+.||.|+|||.++.. +...+..
T Consensus 23 ~~halL~~Gp~G~Gktt~a~~-lA~~l~~ 50 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAALA-LAKELLC 50 (325)
T ss_pred CCceeeeeCCCCCCHHHHHHH-HHHHHhC
Confidence 345 89999999999976544 4444443
|
|
| >PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein | Back alignment and domain information |
|---|
Probab=91.02 E-value=1.2 Score=48.13 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=19.3
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhc
Q 001261 506 DCIGVAKTGSGKTLAFVLPMLRHIKD 531 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~ 531 (1112)
.++++|++|||||. +++-+|.++..
T Consensus 15 r~viIG~sGSGKT~-li~~lL~~~~~ 39 (241)
T PF04665_consen 15 RMVIIGKSGSGKTT-LIKSLLYYLRH 39 (241)
T ss_pred eEEEECCCCCCHHH-HHHHHHHhhcc
Confidence 68899999999995 56666666444
|
This is thought to be an ATPase involved in viral DNA packaging []. |
| >PRK07940 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=91.02 E-value=0.72 Score=54.05 Aligned_cols=45 Identities=22% Similarity=0.372 Sum_probs=26.2
Q ss_pred cCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHH
Q 001261 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQ 661 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~ 661 (1112)
.....++||||+|+|.... ...+.+++..-++. -++++++|-+..
T Consensus 115 ~~~~kViiIDead~m~~~a-anaLLk~LEep~~~-~~fIL~a~~~~~ 159 (394)
T PRK07940 115 TGRWRIVVIEDADRLTERA-ANALLKAVEEPPPR-TVWLLCAPSPED 159 (394)
T ss_pred cCCcEEEEEechhhcCHHH-HHHHHHHhhcCCCC-CeEEEEECChHH
Confidence 3467899999999985432 23445555543334 445555554433
|
|
| >PRK14952 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=91.00 E-value=1.2 Score=54.75 Aligned_cols=44 Identities=23% Similarity=0.330 Sum_probs=25.5
Q ss_pred cCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccH
Q 001261 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPR 660 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~ 660 (1112)
...+.+|||||+|+|....| ..+.+++...+...-+|+.+ |-+.
T Consensus 116 ~~~~KVvIIDEah~Lt~~A~-NALLK~LEEpp~~~~fIL~t-te~~ 159 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAGF-NALLKIVEEPPEHLIFIFAT-TEPE 159 (584)
T ss_pred cCCceEEEEECCCcCCHHHH-HHHHHHHhcCCCCeEEEEEe-CChH
Confidence 45688999999998864332 23444555444444344433 5443
|
|
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Probab=90.97 E-value=2.5 Score=54.01 Aligned_cols=21 Identities=24% Similarity=0.112 Sum_probs=16.6
Q ss_pred CCCEEEEcCCCChHHHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLP 524 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp 524 (1112)
..++|++|++|+|||...-..
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~l 223 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGL 223 (731)
T ss_pred CCceEEECCCCCCHHHHHHHH
Confidence 358999999999999764433
|
|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=90.96 E-value=0.87 Score=60.45 Aligned_cols=76 Identities=12% Similarity=0.211 Sum_probs=64.3
Q ss_pred cCCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-cccccCCCCCccEEE
Q 001261 713 EKGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-VAARGLDVKELELVI 787 (1112)
Q Consensus 713 ~~~~vLIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-v~~~GlDi~~v~~VI 787 (1112)
.+.++||.|||..-|.+++..|... ++.+..++|..+..++..++..+.+|..+|||+|. .+...+.+.++.+||
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 4568999999999999998888753 56788899999999999999999999999999996 444557778888888
Q ss_pred E
Q 001261 788 N 788 (1112)
Q Consensus 788 ~ 788 (1112)
.
T Consensus 728 I 728 (1147)
T PRK10689 728 V 728 (1147)
T ss_pred E
Confidence 5
|
|
| >KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.95 E-value=0.92 Score=51.32 Aligned_cols=16 Identities=38% Similarity=0.598 Sum_probs=14.4
Q ss_pred CCEEEEcCCCChHHHH
Q 001261 505 RDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~ 520 (1112)
+.||.+||.|+|||+.
T Consensus 246 kgvLm~GPPGTGKTlL 261 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLL 261 (491)
T ss_pred ceeeeeCCCCCcHHHH
Confidence 6799999999999974
|
|
| >CHL00181 cbbX CbbX; Provisional | Back alignment and domain information |
|---|
Probab=90.86 E-value=1.1 Score=50.28 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=16.6
Q ss_pred CCCEEEEcCCCChHHHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLP 524 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp 524 (1112)
|.++|+.|++|+|||..+-+.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 456899999999999865543
|
|
| >PRK05563 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=90.84 E-value=1.8 Score=53.35 Aligned_cols=21 Identities=24% Similarity=0.178 Sum_probs=16.2
Q ss_pred CCEEEEcCCCChHHHHHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~ 525 (1112)
+-.|++||.|+|||.++-+.+
T Consensus 39 hayLf~Gp~GtGKTt~Ak~lA 59 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKIFA 59 (559)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 347889999999998655443
|
|
| >KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=90.74 E-value=0.89 Score=50.81 Aligned_cols=17 Identities=29% Similarity=0.202 Sum_probs=14.5
Q ss_pred CEEEEcCCCChHHHHHH
Q 001261 506 DCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~l 522 (1112)
.+|+.||.|+|||..+-
T Consensus 164 SmIlWGppG~GKTtlAr 180 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLAR 180 (554)
T ss_pred ceEEecCCCCchHHHHH
Confidence 68999999999997543
|
|
| >PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A | Back alignment and domain information |
|---|
Probab=90.72 E-value=1.3 Score=45.16 Aligned_cols=42 Identities=12% Similarity=0.270 Sum_probs=26.2
Q ss_pred CCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccc
Q 001261 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
..+.++|||+||.|... -...+.+++..-+.+..+||+|..+
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECCh
Confidence 46889999999987532 3445555666655556555555443
|
... |
| >PRK14965 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=90.68 E-value=1.1 Score=55.58 Aligned_cols=44 Identities=16% Similarity=0.297 Sum_probs=25.2
Q ss_pred cCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccH
Q 001261 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPR 660 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~ 660 (1112)
...+.++||||+|+|.... ...+.+++..-++..- ++|.+|-+.
T Consensus 117 ~~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~-fIl~t~~~~ 160 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVK-FIFATTEPH 160 (576)
T ss_pred cCCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeE-EEEEeCChh
Confidence 4578899999999875422 2344445554444443 334445443
|
|
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
Probab=90.63 E-value=2.2 Score=55.51 Aligned_cols=45 Identities=13% Similarity=0.116 Sum_probs=25.5
Q ss_pred ceEEEeccchhhhccCChh---HHHHHHHhcCCCCcEEEEeccccHHH
Q 001261 618 VTYLVMDEADRMFDMGFEP---QITRIVQNIRPDRQTVLFSATFPRQV 662 (1112)
Q Consensus 618 i~~vViDEah~~~~~gf~~---~i~~il~~~~~~~q~il~SAT~~~~~ 662 (1112)
-.+|+|||+|.++..|... ....++...-....+.++.||-+...
T Consensus 267 ~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~ 314 (852)
T TIGR03346 267 QIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEY 314 (852)
T ss_pred CeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHH
Confidence 4699999999987533221 12233332223345666777765544
|
Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. |
| >KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.46 E-value=0.28 Score=59.31 Aligned_cols=81 Identities=21% Similarity=0.307 Sum_probs=62.9
Q ss_pred HHHhhcCCccEEEecCcccccCCCCCccEEEE--------eCCCCCHhHHHHHhcccCCCCCc-cEEEEEe-cC--CccC
Q 001261 757 ISDFKSNVCNLLIATSVAARGLDVKELELVIN--------FDAPNHYEDYVHRVGRTGRAGRK-GCAITFI-SE--EDAK 824 (1112)
Q Consensus 757 ~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~--------~d~p~s~~~y~QriGR~gR~G~~-g~~i~~~-~~--~d~~ 824 (1112)
-+.|.+|...|-|-+.+++.||-+..-..|+| +.+|||....+|..||+.|..+. +.-|+|+ +. .+..
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErR 929 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERR 929 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchH
Confidence 36899999999999999999999887665554 88999999999999999998763 4445544 32 4667
Q ss_pred chHHHHHHHhhcc
Q 001261 825 YSPDLVKALELSE 837 (1112)
Q Consensus 825 ~~~~i~~~l~~~~ 837 (1112)
++..+.+.|+.-+
T Consensus 930 FAS~VAKRLESLG 942 (1300)
T KOG1513|consen 930 FASIVAKRLESLG 942 (1300)
T ss_pred HHHHHHHHHHhhc
Confidence 7777777776543
|
|
| >PRK04328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.40 E-value=1.2 Score=48.80 Aligned_cols=52 Identities=19% Similarity=0.281 Sum_probs=33.5
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
.|.-+++.|++|+|||+..+..++..+.. |..+++++ +.+-..++...+..|
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~--------ge~~lyis-~ee~~~~i~~~~~~~ 73 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--------GEPGVYVA-LEEHPVQVRRNMRQF 73 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc--------CCcEEEEE-eeCCHHHHHHHHHHc
Confidence 35678889999999997655555554432 55667765 444455555555554
|
|
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=90.34 E-value=3.3 Score=48.06 Aligned_cols=132 Identities=20% Similarity=0.220 Sum_probs=78.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc--cchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH
Q 001261 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI 584 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~--PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~ 584 (1112)
++.+|=-|||||++..-.+. ++.. .+.++++++ ..|.-|. +.++.++...++.+.....+. .+..+
T Consensus 103 ImmvGLQGsGKTTt~~KLA~-~lkk-------~~~kvllVaaD~~RpAA~---eQL~~La~q~~v~~f~~~~~~-~Pv~I 170 (451)
T COG0541 103 ILMVGLQGSGKTTTAGKLAK-YLKK-------KGKKVLLVAADTYRPAAI---EQLKQLAEQVGVPFFGSGTEK-DPVEI 170 (451)
T ss_pred EEEEeccCCChHhHHHHHHH-HHHH-------cCCceEEEecccCChHHH---HHHHHHHHHcCCceecCCCCC-CHHHH
Confidence 67789999999987554433 3333 255666665 3344443 667777777787766552222 12211
Q ss_pred HHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhh-ccCChhHHHHHHHhcCCCCcEEEEeccccHHHH
Q 001261 585 SELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF-DMGFEPQITRIVQNIRPDRQTVLFSATFPRQVE 663 (1112)
Q Consensus 585 ~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~-~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~ 663 (1112)
.. ..+.. .....+++||||=|-|+- +......+..|-..++|+--++++=|++-....
T Consensus 171 ak----------------~al~~-----ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~ 229 (451)
T COG0541 171 AK----------------AALEK-----AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAV 229 (451)
T ss_pred HH----------------HHHHH-----HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHH
Confidence 10 01111 123346677777777542 333456677788888888888888888877776
Q ss_pred HHHHHhcC
Q 001261 664 ILARKVLN 671 (1112)
Q Consensus 664 ~l~~~~~~ 671 (1112)
..+..|-.
T Consensus 230 ~~A~aF~e 237 (451)
T COG0541 230 NTAKAFNE 237 (451)
T ss_pred HHHHHHhh
Confidence 66666543
|
|
| >PRK06964 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=90.21 E-value=1.8 Score=49.70 Aligned_cols=35 Identities=14% Similarity=0.054 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHc--C---CCEEEEcCCCChHHHHHHHHH
Q 001261 491 MPIQAQALPVIMS--G---RDCIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 491 t~iQ~~ai~~il~--g---~dvii~a~TGsGKT~~~llp~ 525 (1112)
+|+|...+..+.. + +-+|+.|+.|.||+..+...+
T Consensus 3 yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A 42 (342)
T PRK06964 3 YPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLA 42 (342)
T ss_pred CcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHH
Confidence 5778777777664 2 357899999999997654443
|
|
| >PRK14950 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=90.18 E-value=3.3 Score=51.43 Aligned_cols=19 Identities=21% Similarity=0.162 Sum_probs=15.0
Q ss_pred CEEEEcCCCChHHHHHHHH
Q 001261 506 DCIGVAKTGSGKTLAFVLP 524 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp 524 (1112)
.+|++|+.|+|||.++.+.
T Consensus 40 a~Lf~Gp~G~GKTtlA~~l 58 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARIL 58 (585)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3689999999999765543
|
|
| >KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.15 E-value=3.9 Score=49.42 Aligned_cols=136 Identities=18% Similarity=0.160 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHc-------CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001261 491 MPIQAQALPVIMS-------GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 491 t~iQ~~ai~~il~-------g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
|-.|..|+-.++. .--+-+.|.-|-||+.+..+.+...+.... -.+.|..|.-+-..-++.-+-+=
T Consensus 255 T~dQakav~~f~dai~eK~lr~~vsLtA~RGRGKSAALGlsiA~AVa~Gy-------snIyvtSPspeNlkTlFeFv~kG 327 (1011)
T KOG2036|consen 255 TLDQAKAVLTFFDAIVEKTLRSTVSLTASRGRGKSAALGLSIAGAVAFGY-------SNIYVTSPSPENLKTLFEFVFKG 327 (1011)
T ss_pred hHHHHHHHHHHHHHHHHhhhcceEEEEecCCCCchhhhhHHHHHHHhcCc-------ceEEEcCCChHHHHHHHHHHHcc
Confidence 4567777655442 234667799999999998888877765421 12455668876655444433332
Q ss_pred hhhcCceEEEEeCCCChHHHHHHHhc---CC------------eEEEeCchHHHHHHHhcCCcccccCCceEEEeccchh
Q 001261 564 AKVMGVRCVPVYGGSGVAQQISELKR---GT------------EIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADR 628 (1112)
Q Consensus 564 ~~~~~i~~~~~~gg~~~~~~~~~l~~---~~------------~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~ 628 (1112)
+..+++.-..- .+-+..... .+ -|=+..|. ....|....+||||||-.
T Consensus 328 fDaL~Yqeh~D------y~iI~s~np~fkkaivRInifr~hrQtIQYi~P~-----------D~~kl~q~eLlVIDEAAA 390 (1011)
T KOG2036|consen 328 FDALEYQEHVD------YDIIQSTNPDFKKAIVRINIFREHRQTIQYISPH-----------DHQKLGQAELLVIDEAAA 390 (1011)
T ss_pred hhhhcchhhcc------hhhhhhcChhhhhhEEEEEEeccccceeEeeccc-----------hhhhccCCcEEEechhhc
Confidence 22222211100 000111000 00 12222222 112456788999999997
Q ss_pred hhccCChhHHHHHHHhcCCCCcEEEEecccc
Q 001261 629 MFDMGFEPQITRIVQNIRPDRQTVLFSATFP 659 (1112)
Q Consensus 629 ~~~~gf~~~i~~il~~~~~~~q~il~SAT~~ 659 (1112)
+- .+.++.++ ...+|+|+.|+.
T Consensus 391 IP----Lplvk~Li-----gPylVfmaSTin 412 (1011)
T KOG2036|consen 391 IP----LPLVKKLI-----GPYLVFMASTIN 412 (1011)
T ss_pred CC----HHHHHHhh-----cceeEEEeeccc
Confidence 63 56666665 345888998875
|
|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=90.15 E-value=1.1 Score=55.99 Aligned_cols=93 Identities=20% Similarity=0.229 Sum_probs=77.2
Q ss_pred cccchhHHHHHHHHHhhhcCC-eEEEEeCCHHHHHHHHHHHHh-cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC
Q 001261 695 RPESDRFLRLLELLGEWYEKG-KILIFVHSQEKCDALFRDLLK-HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS 772 (1112)
Q Consensus 695 ~~~~~k~~~ll~~l~~~~~~~-~vLIF~~s~~~~~~l~~~L~~-~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~ 772 (1112)
...+.|....+.++......| ++||.++-+.....+...|.. .|.++..+|++++..+|..+.....+|+.+|+|.|-
T Consensus 225 vTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtR 304 (730)
T COG1198 225 VTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTR 304 (730)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEec
Confidence 445677788888888777666 899999999988888888876 489999999999999999999999999999999995
Q ss_pred cccccCCCCCccEEEE
Q 001261 773 VAARGLDVKELELVIN 788 (1112)
Q Consensus 773 v~~~GlDi~~v~~VI~ 788 (1112)
.+- =+-++++.+||.
T Consensus 305 SAl-F~Pf~~LGLIIv 319 (730)
T COG1198 305 SAL-FLPFKNLGLIIV 319 (730)
T ss_pred hhh-cCchhhccEEEE
Confidence 442 245677777774
|
|
| >PF05729 NACHT: NACHT domain | Back alignment and domain information |
|---|
Probab=90.12 E-value=2.9 Score=42.12 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=17.7
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhc
Q 001261 506 DCIGVAKTGSGKTLAFVLPMLRHIKD 531 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~ 531 (1112)
-++|.|+.|+|||+. +..++..+..
T Consensus 2 ~l~I~G~~G~GKStl-l~~~~~~~~~ 26 (166)
T PF05729_consen 2 VLWISGEPGSGKSTL-LRKLAQQLAE 26 (166)
T ss_pred EEEEECCCCCChHHH-HHHHHHHHHh
Confidence 378899999999975 4445545444
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.01 E-value=1.1 Score=54.73 Aligned_cols=68 Identities=21% Similarity=0.344 Sum_probs=56.2
Q ss_pred EEEEeCCHHHHHHHHHHHHhc-----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEec-----Cccccc-CCCCCccE
Q 001261 717 ILIFVHSQEKCDALFRDLLKH-----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT-----SVAARG-LDVKELEL 785 (1112)
Q Consensus 717 vLIF~~s~~~~~~l~~~L~~~-----g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT-----~v~~~G-lDi~~v~~ 785 (1112)
+||++||++-|.+++..+... ++.++.++||++...+...+. .| .+||||| +.+.+| +++..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~---~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALK---RG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHh---cC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 899999999999998888653 567899999999877765444 46 9999999 466666 89999999
Q ss_pred EEE
Q 001261 786 VIN 788 (1112)
Q Consensus 786 VI~ 788 (1112)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 985
|
|
| >KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=90.00 E-value=0.4 Score=57.70 Aligned_cols=42 Identities=26% Similarity=0.442 Sum_probs=35.1
Q ss_pred CChHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHHh
Q 001261 489 KPMPIQAQALPVIM----SGRDCIGVAKTGSGKTLAFVLPMLRHIK 530 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il----~g~dvii~a~TGsGKT~~~llp~l~~l~ 530 (1112)
+|+.||.+.+..+. .|+-.|+-+|||+|||+..+-.++..|.
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~ 60 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLR 60 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHH
Confidence 78999998887665 7898999999999999988777776654
|
|
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
Probab=89.97 E-value=1.8 Score=50.37 Aligned_cols=50 Identities=18% Similarity=0.175 Sum_probs=29.8
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~ 562 (1112)
|.-+++.|++|+|||+..+..+. .+.. .+..+|++.-. +-..|+...+..
T Consensus 82 GslvLI~G~pG~GKStLllq~a~-~~a~-------~g~~VlYvs~E-Es~~qi~~Ra~r 131 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAA-RLAK-------RGGKVLYVSGE-ESPEQIKLRADR 131 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH-HHHh-------cCCeEEEEECC-cCHHHHHHHHHH
Confidence 45678889999999975444433 3222 23467777643 334565444444
|
This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. |
| >PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
Probab=89.93 E-value=1.1 Score=52.66 Aligned_cols=54 Identities=22% Similarity=0.246 Sum_probs=30.6
Q ss_pred cccccccCCCCHHHHHHHHH---CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHH
Q 001261 465 PIKTWHQTGLTSKIMETIRK---LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 465 pi~~~~~~~L~~~l~~~l~~---~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~ 521 (1112)
|-.+|.+.+--....+.|.. +.+..|.-++...+ -..+.+|+.||+|+|||+.+
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl---~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGI---DPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCC---CCCceEEEECCCCCCHHHHH
Confidence 33567777655555554443 22222222222111 23578999999999999753
|
|
| >KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=89.93 E-value=1.9 Score=48.82 Aligned_cols=46 Identities=20% Similarity=0.335 Sum_probs=32.9
Q ss_pred CCceEEEeccchhhhccC--ChhHHHHHHHhcCCCCcEEEEeccccHH
Q 001261 616 RRVTYLVMDEADRMFDMG--FEPQITRIVQNIRPDRQTVLFSATFPRQ 661 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~g--f~~~i~~il~~~~~~~q~il~SAT~~~~ 661 (1112)
+..-+||+|-|+.+-|++ ..+.+.++-..++.+.-.|+||+++++.
T Consensus 114 d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 114 DQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEK 161 (438)
T ss_pred CceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHH
Confidence 456799999999998887 3444555545555555568899998765
|
|
| >TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ | Back alignment and domain information |
|---|
Probab=89.83 E-value=0.54 Score=54.48 Aligned_cols=48 Identities=19% Similarity=0.310 Sum_probs=31.3
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhc
Q 001261 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKD 531 (1112)
Q Consensus 465 pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~ 531 (1112)
.+.++.++|+++.+++.+. ..+..+|++|+||||||+. +..++.++..
T Consensus 128 ~~~~l~~lgl~~~~~~~l~------------------~~~GlilI~G~TGSGKTT~-l~al~~~i~~ 175 (372)
T TIGR02525 128 DIPDLKQMGIEPDLFNSLL------------------PAAGLGLICGETGSGKSTL-AASIYQHCGE 175 (372)
T ss_pred cCCCHHHcCCCHHHHHHHH------------------hcCCEEEEECCCCCCHHHH-HHHHHHHHHh
Confidence 3446777777775543221 2344688999999999964 5667777654
|
Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524). |
| >KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.79 E-value=0.21 Score=58.00 Aligned_cols=9 Identities=33% Similarity=0.250 Sum_probs=4.3
Q ss_pred EEEcCCCCh
Q 001261 508 IGVAKTGSG 516 (1112)
Q Consensus 508 ii~a~TGsG 516 (1112)
+|+|-||-|
T Consensus 435 ~V~~~~GkG 443 (752)
T KOG0670|consen 435 EVQGYTGKG 443 (752)
T ss_pred EEEeccccc
Confidence 444555544
|
|
| >PRK08699 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=89.76 E-value=2.2 Score=48.81 Aligned_cols=36 Identities=19% Similarity=0.164 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHc--C---CCEEEEcCCCChHHHHHHHHHH
Q 001261 491 MPIQAQALPVIMS--G---RDCIGVAKTGSGKTLAFVLPML 526 (1112)
Q Consensus 491 t~iQ~~ai~~il~--g---~dvii~a~TGsGKT~~~llp~l 526 (1112)
+|+|...|..+.. + +-+|+.||.|+|||..+...+-
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~ 43 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQ 43 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHH
Confidence 5788888887763 3 2488999999999976554433
|
|
| >TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX | Back alignment and domain information |
|---|
Probab=89.71 E-value=1 Score=50.52 Aligned_cols=19 Identities=21% Similarity=0.165 Sum_probs=16.0
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
+.++++.|++|+|||+++.
T Consensus 58 ~~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 4579999999999997653
|
Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis. |
| >PRK14955 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=89.71 E-value=2.1 Score=50.53 Aligned_cols=20 Identities=30% Similarity=0.129 Sum_probs=15.9
Q ss_pred CEEEEcCCCChHHHHHHHHH
Q 001261 506 DCIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~ 525 (1112)
.+|+.||.|+|||+++.+.+
T Consensus 40 a~lf~Gp~G~GKtt~A~~~a 59 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVFA 59 (397)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 48899999999998665443
|
|
| >PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2 | Back alignment and domain information |
|---|
Probab=89.67 E-value=0.62 Score=48.12 Aligned_cols=36 Identities=19% Similarity=0.160 Sum_probs=24.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccch
Q 001261 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTR 550 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptr 550 (1112)
.++.||++||||..++.-+.+. .. .+.+++++-|..
T Consensus 4 ~~i~GpM~sGKS~eLi~~~~~~-~~-------~~~~v~~~kp~~ 39 (176)
T PF00265_consen 4 EFITGPMFSGKSTELIRRIHRY-EI-------AGKKVLVFKPAI 39 (176)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH-HH-------TT-EEEEEEEST
T ss_pred EEEECCcCChhHHHHHHHHHHH-Hh-------CCCeEEEEEecc
Confidence 5788999999998655444333 22 266788988853
|
7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F .... |
| >PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging [] | Back alignment and domain information |
|---|
Probab=89.63 E-value=2.6 Score=48.78 Aligned_cols=145 Identities=18% Similarity=0.171 Sum_probs=62.7
Q ss_pred EEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHH----HHHHHHHhhh-cCceEEEEeCCCChHH
Q 001261 508 IGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQI----HSDIRKFAKV-MGVRCVPVYGGSGVAQ 582 (1112)
Q Consensus 508 ii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~----~~~~~~~~~~-~~i~~~~~~gg~~~~~ 582 (1112)
|+.++.|+|||.+.++.++.++...+. +..++++ ||..-+... ...+..+... +.+...........
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~-----~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 72 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP-----GRRVIIA-STYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRKII-- 72 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS-------EEEEE-ESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSEEE--
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC-----CcEEEEe-cCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCcEE--
Confidence 577899999999988888887776431 2345555 665554442 2233333333 12222211111100
Q ss_pred HHHHHhcCCeEEEeCchH--HHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccc--
Q 001261 583 QISELKRGTEIVVCTPGR--MIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF-- 658 (1112)
Q Consensus 583 ~~~~l~~~~~IvV~Tp~~--L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~-- 658 (1112)
+..|..|.+.+-.. -..-+.. ..+++|||||+-.+.+..+...+...+..... ...+++|.|+
T Consensus 73 ----~~nG~~i~~~~~~~~~~~~~~~G--------~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~p~~~ 139 (384)
T PF03237_consen 73 ----LPNGSRIQFRGADSPDSGDNIRG--------FEYDLIIIDEAAKVPDDAFSELIRRLRATWGG-SIRMYISTPPNP 139 (384)
T ss_dssp ----ETTS-EEEEES-----SHHHHHT--------S--SEEEEESGGGSTTHHHHHHHHHHHHCSTT---EEEEEE---S
T ss_pred ----ecCceEEEEeccccccccccccc--------cccceeeeeecccCchHHHHHHHHhhhhcccC-cceEEeecCCCC
Confidence 13456666666331 1111111 35779999998876543333333333222222 2222444442
Q ss_pred cHHHHHHHHHhcCCC
Q 001261 659 PRQVEILARKVLNKP 673 (1112)
Q Consensus 659 ~~~~~~l~~~~~~~p 673 (1112)
......+........
T Consensus 140 ~~~~~~~~~~~~~~~ 154 (384)
T PF03237_consen 140 GGWFYEIFQRNLDDD 154 (384)
T ss_dssp SSHHHHHHHHHHCTS
T ss_pred CCceeeeeehhhcCC
Confidence 234444555555544
|
The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A. |
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=89.61 E-value=0.53 Score=54.40 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=20.6
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhc
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKD 531 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~ 531 (1112)
.+.-++++||||||||+. +..++..+..
T Consensus 133 ~~glilI~GpTGSGKTTt-L~aLl~~i~~ 160 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL-LAAIIRELAE 160 (358)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHhh
Confidence 456788999999999974 4556666543
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
| >COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=89.56 E-value=0.51 Score=52.92 Aligned_cols=62 Identities=21% Similarity=0.175 Sum_probs=42.1
Q ss_pred CCCCCChHHHHHHHHHHHcCC-CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHH
Q 001261 485 LNYEKPMPIQAQALPVIMSGR-DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQ 555 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~-dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q 555 (1112)
..|...++-|...+-.+..++ ++|++|.||||||+. +-.++..+. ..-+++.|=-|.||-.+
T Consensus 153 i~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-LNal~~~i~--------~~eRvItiEDtaELql~ 215 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-LNALSGFID--------SDERVITIEDTAELQLA 215 (355)
T ss_pred HHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-HHHHHhcCC--------CcccEEEEeehhhhccC
Confidence 345678899998888877665 999999999999973 222222211 12367777777777443
|
|
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=89.49 E-value=2.8 Score=54.24 Aligned_cols=18 Identities=28% Similarity=0.303 Sum_probs=15.3
Q ss_pred CCEEEEcCCCChHHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~l 522 (1112)
.++|++|+.|+|||...-
T Consensus 209 ~n~lLvG~pGvGKTal~~ 226 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVVE 226 (852)
T ss_pred CceeEECCCCCCHHHHHH
Confidence 589999999999997543
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >PHA00729 NTP-binding motif containing protein | Back alignment and domain information |
|---|
Probab=89.32 E-value=2.2 Score=45.75 Aligned_cols=74 Identities=15% Similarity=0.217 Sum_probs=37.1
Q ss_pred eEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccC-Ch----hHHHHHHHhcCCCCcEEEEeccccHHHHHHH
Q 001261 592 EIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG-FE----PQITRIVQNIRPDRQTVLFSATFPRQVEILA 666 (1112)
Q Consensus 592 ~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~g-f~----~~i~~il~~~~~~~q~il~SAT~~~~~~~l~ 666 (1112)
..++.+...|+..+.... .....+.+||||++---+... |. ..+..+...++...+++.|...-|..+...+
T Consensus 60 ~~~fid~~~Ll~~L~~a~---~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~L 136 (226)
T PHA00729 60 NSYFFELPDALEKIQDAI---DNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYL 136 (226)
T ss_pred cEEEEEHHHHHHHHHHHH---hcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHH
Confidence 344555555555543211 112346789999943211110 11 1223344445555667777777666666555
Q ss_pred HH
Q 001261 667 RK 668 (1112)
Q Consensus 667 ~~ 668 (1112)
+.
T Consensus 137 r~ 138 (226)
T PHA00729 137 RE 138 (226)
T ss_pred Hh
Confidence 54
|
|
| >PRK13851 type IV secretion system protein VirB11; Provisional | Back alignment and domain information |
|---|
Probab=89.31 E-value=0.54 Score=53.94 Aligned_cols=47 Identities=23% Similarity=0.222 Sum_probs=31.0
Q ss_pred HHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHH
Q 001261 498 LPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553 (1112)
Q Consensus 498 i~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa 553 (1112)
..++..+.++|++|+||||||+. +-.++..+- ....++.+-.+.||.
T Consensus 156 ~~~v~~~~nilI~G~tGSGKTTl-l~aLl~~i~--------~~~rivtiEd~~El~ 202 (344)
T PRK13851 156 HACVVGRLTMLLCGPTGSGKTTM-SKTLISAIP--------PQERLITIEDTLELV 202 (344)
T ss_pred HHHHHcCCeEEEECCCCccHHHH-HHHHHcccC--------CCCCEEEECCCcccc
Confidence 33455788999999999999963 444554332 133556666777764
|
|
| >PHA00350 putative assembly protein | Back alignment and domain information |
|---|
Probab=89.28 E-value=3.2 Score=48.30 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=17.7
Q ss_pred EEEEcCCCChHHHHHHH-HHHHHHhc
Q 001261 507 CIGVAKTGSGKTLAFVL-PMLRHIKD 531 (1112)
Q Consensus 507 vii~a~TGsGKT~~~ll-p~l~~l~~ 531 (1112)
.|+.|..|||||+.++. .++..+..
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~ 29 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKD 29 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHC
Confidence 57889999999987665 34444443
|
|
| >TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family | Back alignment and domain information |
|---|
Probab=89.23 E-value=1.9 Score=46.38 Aligned_cols=51 Identities=18% Similarity=0.245 Sum_probs=32.0
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
|.-+++.|++|+|||...+..+...+. .+..|++++. .+-..++...+..+
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~--------~g~~~~y~s~-e~~~~~l~~~~~~~ 66 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLK--------NGEKAMYISL-EEREERILGYAKSK 66 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh--------CCCeEEEEEC-CCCHHHHHHHHHHc
Confidence 456788999999999754444444332 2556777654 34456666655554
|
This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself. |
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=89.21 E-value=1.1 Score=51.84 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=20.1
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHh
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIK 530 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~ 530 (1112)
.|+-++++|++|+|||+. +..+++.+.
T Consensus 167 ~Gq~~~IvG~~g~GKTtL-~~~i~~~I~ 193 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVL-LQKIAQAIT 193 (415)
T ss_pred CCCEEEEECCCCCChhHH-HHHHHHhhc
Confidence 688899999999999974 333444443
|
Members of this family differ in the specificity of RNA binding. |
| >PRK13900 type IV secretion system ATPase VirB11; Provisional | Back alignment and domain information |
|---|
Probab=89.18 E-value=1 Score=51.62 Aligned_cols=45 Identities=29% Similarity=0.346 Sum_probs=29.8
Q ss_pred HHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHH
Q 001261 500 VIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553 (1112)
Q Consensus 500 ~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa 553 (1112)
++..+.++|++|+||||||+ ++-.++.++-. ..+++++=-+.||.
T Consensus 156 ~v~~~~nili~G~tgSGKTT-ll~aL~~~ip~--------~~ri~tiEd~~El~ 200 (332)
T PRK13900 156 AVISKKNIIISGGTSTGKTT-FTNAALREIPA--------IERLITVEDAREIV 200 (332)
T ss_pred HHHcCCcEEEECCCCCCHHH-HHHHHHhhCCC--------CCeEEEecCCCccc
Confidence 34567899999999999996 45555655422 23455555566654
|
|
| >PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases | Back alignment and domain information |
|---|
Probab=89.17 E-value=0.86 Score=49.54 Aligned_cols=88 Identities=14% Similarity=0.285 Sum_probs=61.8
Q ss_pred CCCeeeecCCCCHHHHHHHHHHhhcC----CccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccC-CCCCcc
Q 001261 738 GYPCLSLHGAKDQTDRESTISDFKSN----VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTG-RAGRKG 812 (1112)
Q Consensus 738 g~~~~~ihg~~~~~~R~~~~~~F~~g----~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~g-R~G~~g 812 (1112)
++.+..++++.+... -.|.++ ...|+|+=+.++|||.++++.+..+..-+...+++.||.==.| |.|-.+
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 456666665544322 233333 3789999999999999999999999999998888888653333 777788
Q ss_pred EEEEEecCCccCchHHHH
Q 001261 813 CAITFISEEDAKYSPDLV 830 (1112)
Q Consensus 813 ~~i~~~~~~d~~~~~~i~ 830 (1112)
.|-+|+++.-...+..|.
T Consensus 185 l~Ri~~~~~l~~~f~~i~ 202 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRHIA 202 (239)
T ss_pred ceEEecCHHHHHHHHHHH
Confidence 899888754444443443
|
This domain is found associated with a helicase domain of superfamily type II []. |
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.11 E-value=5.7 Score=47.40 Aligned_cols=98 Identities=15% Similarity=0.282 Sum_probs=72.4
Q ss_pred CCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHH---HHHHh
Q 001261 512 KTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ---ISELK 588 (1112)
Q Consensus 512 ~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~---~~~l~ 588 (1112)
-+++|++..-++++.+.+.. +-.|.+||.+-+.+-|.|++.++. .+-++.+..++|..+..+. +..+.
T Consensus 365 lvF~gse~~K~lA~rq~v~~------g~~PP~lIfVQs~eRak~L~~~L~---~~~~i~v~vIh~e~~~~qrde~~~~FR 435 (593)
T KOG0344|consen 365 LVFCGSEKGKLLALRQLVAS------GFKPPVLIFVQSKERAKQLFEELE---IYDNINVDVIHGERSQKQRDETMERFR 435 (593)
T ss_pred heeeecchhHHHHHHHHHhc------cCCCCeEEEEecHHHHHHHHHHhh---hccCcceeeEecccchhHHHHHHHHHh
Confidence 45788888878777776654 356888999999999999998887 2357888889998655433 34444
Q ss_pred cC-CeEEEeCchHHHHHHHhcCCcccccCCceEEEeccch
Q 001261 589 RG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD 627 (1112)
Q Consensus 589 ~~-~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah 627 (1112)
.| ..|+|||. +|.++ .+|..+.+||.+..-
T Consensus 436 ~g~IwvLicTd-----ll~RG----iDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 436 IGKIWVLICTD-----LLARG----IDFKGVNLVINYDFP 466 (593)
T ss_pred ccCeeEEEehh-----hhhcc----ccccCcceEEecCCC
Confidence 44 58999993 45443 689999999996655
|
|
| >COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=89.09 E-value=0.69 Score=54.54 Aligned_cols=40 Identities=25% Similarity=0.364 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHcCCC--EEEEcCCCChHHHHHHHHHHHHHhc
Q 001261 491 MPIQAQALPVIMSGRD--CIGVAKTGSGKTLAFVLPMLRHIKD 531 (1112)
Q Consensus 491 t~iQ~~ai~~il~g~d--vii~a~TGsGKT~~~llp~l~~l~~ 531 (1112)
++.|...+..++.... +|+.||||||||+. +..++..+..
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 5788888887776543 56679999999975 5555655443
|
|
| >PRK06871 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=89.04 E-value=1.6 Score=49.63 Aligned_cols=35 Identities=17% Similarity=0.117 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHH----cCC---CEEEEcCCCChHHHHHHHHH
Q 001261 491 MPIQAQALPVIM----SGR---DCIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 491 t~iQ~~ai~~il----~g~---dvii~a~TGsGKT~~~llp~ 525 (1112)
+|+|...+..+. .|+ -.|+.|+.|.||+..+...+
T Consensus 4 yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A 45 (325)
T PRK06871 4 YPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALA 45 (325)
T ss_pred CcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHH
Confidence 466666665544 543 57789999999997554443
|
|
| >PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated | Back alignment and domain information |
|---|
Probab=88.91 E-value=5.9 Score=40.75 Aligned_cols=51 Identities=16% Similarity=0.332 Sum_probs=40.8
Q ss_pred CCceEEEeccchhhhccCCh--hHHHHHHHhcCCCCcEEEEeccccHHHHHHH
Q 001261 616 RRVTYLVMDEADRMFDMGFE--PQITRIVQNIRPDRQTVLFSATFPRQVEILA 666 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~gf~--~~i~~il~~~~~~~q~il~SAT~~~~~~~l~ 666 (1112)
..+++|||||+-..++.|+. ..+..++...++..-+|++.-.+|+.+..++
T Consensus 114 ~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~A 166 (178)
T PRK07414 114 GRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIA 166 (178)
T ss_pred CCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhC
Confidence 56899999999998888865 4577788888778788888888888776554
|
|
| >KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.66 E-value=2.1 Score=49.87 Aligned_cols=71 Identities=15% Similarity=0.378 Sum_probs=53.8
Q ss_pred CCeE-EEEeCCHHHHHHHHHHHHh----cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-----ccc-ccCCCCC
Q 001261 714 KGKI-LIFVHSQEKCDALFRDLLK----HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAA-RGLDVKE 782 (1112)
Q Consensus 714 ~~~v-LIF~~s~~~~~~l~~~L~~----~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-----v~~-~GlDi~~ 782 (1112)
.|++ ||.|+|++-|.+++...++ +|+.++++||+++..++...++ -..-|+|||+ ++- -++|+..
T Consensus 295 ~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTPgRlid~VkmKatn~~r 370 (731)
T KOG0339|consen 295 EGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK----EGAEIVVATPGRLIDMVKMKATNLSR 370 (731)
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh----cCCeEEEechHHHHHHHHhhccccee
Confidence 3454 6778999988887665544 5899999999999888776665 3467999994 222 5889999
Q ss_pred ccEEEE
Q 001261 783 LELVIN 788 (1112)
Q Consensus 783 v~~VI~ 788 (1112)
++++|+
T Consensus 371 vS~LV~ 376 (731)
T KOG0339|consen 371 VSYLVL 376 (731)
T ss_pred eeEEEE
Confidence 998885
|
|
| >TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit | Back alignment and domain information |
|---|
Probab=88.65 E-value=1.1 Score=50.64 Aligned_cols=17 Identities=24% Similarity=0.157 Sum_probs=14.3
Q ss_pred CCEEEEcCCCChHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~ 521 (1112)
..+|+.||.|+|||..+
T Consensus 31 ~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46899999999999643
|
RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. |
| >PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP | Back alignment and domain information |
|---|
Probab=88.54 E-value=0.51 Score=50.70 Aligned_cols=40 Identities=10% Similarity=0.275 Sum_probs=23.7
Q ss_pred eEEEeccchhhh-c----cCChhHHHHHHHhcC-CCCcEEEEeccc
Q 001261 619 TYLVMDEADRMF-D----MGFEPQITRIVQNIR-PDRQTVLFSATF 658 (1112)
Q Consensus 619 ~~vViDEah~~~-~----~gf~~~i~~il~~~~-~~~q~il~SAT~ 658 (1112)
-+|||||+|.+. . ..+...+..++.... ....+++++++.
T Consensus 120 ~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 120 VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 689999999988 2 224445555555522 233455566665
|
; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A. |
| >KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.37 E-value=1.6 Score=48.36 Aligned_cols=114 Identities=18% Similarity=0.248 Sum_probs=63.9
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCC-cEEEEccchhH-----------HHHHHHHHHHHhhhcCce
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGP-VGLIMAPTREL-----------VQQIHSDIRKFAKVMGVR 570 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~-~~LIl~PtreL-----------a~Q~~~~~~~~~~~~~i~ 570 (1112)
.++-+|+.||+|+|||. .+-++.+++.-. ..+..+ -.||=...-.| +.++++.|..+...-+.-
T Consensus 176 ~NRliLlhGPPGTGKTS-LCKaLaQkLSIR---~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~l 251 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTS-LCKALAQKLSIR---TNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNL 251 (423)
T ss_pred eeeEEEEeCCCCCChhH-HHHHHHHhheee---ecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcE
Confidence 45668889999999994 566677766432 111222 23444444444 455555666666655665
Q ss_pred EEEEeCCCC------------------------hHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccc
Q 001261 571 CVPVYGGSG------------------------VAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEA 626 (1112)
Q Consensus 571 ~~~~~gg~~------------------------~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEa 626 (1112)
+++++.... .-.|+..+++-.+|+|-|..-|.+ .++.-.+|-|
T Consensus 252 VfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~-------------siD~AfVDRA 318 (423)
T KOG0744|consen 252 VFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTD-------------SIDVAFVDRA 318 (423)
T ss_pred EEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHH-------------HHHHHhhhHh
Confidence 555543210 123556666666665554433322 3455678888
Q ss_pred hhhhccC
Q 001261 627 DRMFDMG 633 (1112)
Q Consensus 627 h~~~~~g 633 (1112)
|-.+..|
T Consensus 319 Di~~yVG 325 (423)
T KOG0744|consen 319 DIVFYVG 325 (423)
T ss_pred hheeecC
Confidence 8655444
|
|
| >COG3972 Superfamily I DNA and RNA helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.35 E-value=1.2 Score=51.86 Aligned_cols=70 Identities=16% Similarity=0.016 Sum_probs=49.1
Q ss_pred CChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001261 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
.+-..|..+.-..-.|.- .|.|=.|||||...++-+.. |... +..-+++|.+-|+.|+.++...+.+|+-
T Consensus 162 nfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~-lh~k-----nPd~~I~~Tfftk~L~s~~r~lv~~F~f 231 (660)
T COG3972 162 NFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAE-LHSK-----NPDSRIAFTFFTKILASTMRTLVPEFFF 231 (660)
T ss_pred cccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHH-HhcC-----CCCceEEEEeehHHHHHHHHHHHHHHHH
Confidence 334567766555556655 56788999999865554443 3321 2355789999999999999999988874
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=88.26 E-value=2.1 Score=56.50 Aligned_cols=44 Identities=16% Similarity=0.286 Sum_probs=34.5
Q ss_pred CceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccH
Q 001261 617 RVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPR 660 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~ 660 (1112)
.--+||||.+|.+.+......+..++...++...+|+.|-+.|+
T Consensus 121 ~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 121 QPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred CCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 34589999999886555566788888888888999888887543
|
|
| >TIGR02237 recomb_radB DNA repair and recombination protein RadB | Back alignment and domain information |
|---|
Probab=88.11 E-value=5.2 Score=42.43 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=24.9
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEcc
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP 548 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~P 548 (1112)
.|.-+.+.|++|+|||...+..+...+. .+..++++.-
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~--------~g~~v~yi~~ 48 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAAR--------QGKKVVYIDT 48 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh--------CCCeEEEEEC
Confidence 3456888999999999765544444322 2456676654
|
This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236). |
| >PRK13764 ATPase; Provisional | Back alignment and domain information |
|---|
Probab=88.03 E-value=0.95 Score=55.53 Aligned_cols=27 Identities=15% Similarity=0.281 Sum_probs=20.7
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHh
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIK 530 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~ 530 (1112)
.+..+|++|+||||||+ ++..++.++.
T Consensus 256 ~~~~ILIsG~TGSGKTT-ll~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKST-FAQALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHH-HHHHHHHHHh
Confidence 45679999999999996 4556666654
|
|
| >PRK14948 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=87.99 E-value=2.7 Score=52.35 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=16.1
Q ss_pred CCEEEEcCCCChHHHHHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~ 525 (1112)
..+|+.|+.|+|||..+.+.+
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lA 59 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILA 59 (620)
T ss_pred ceEEEECCCCCChHHHHHHHH
Confidence 457999999999997655433
|
|
| >KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.87 E-value=2.7 Score=50.40 Aligned_cols=54 Identities=20% Similarity=0.321 Sum_probs=32.5
Q ss_pred cccccccCCCCHHHHHHHHH---CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHH
Q 001261 465 PIKTWHQTGLTSKIMETIRK---LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 465 pi~~~~~~~L~~~l~~~l~~---~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~ 521 (1112)
|-.+|.+.|--..+...|.. ..+..|-.++.-.|. .-..+|++||.|+|||+.+
T Consensus 506 PdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~---~PsGvLL~GPPGCGKTLlA 562 (802)
T KOG0733|consen 506 PDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGID---APSGVLLCGPPGCGKTLLA 562 (802)
T ss_pred CCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCC---CCCceEEeCCCCccHHHHH
Confidence 45789998866666555442 222333323222221 1356999999999999753
|
|
| >PRK14954 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=87.85 E-value=1.2 Score=55.18 Aligned_cols=20 Identities=30% Similarity=0.129 Sum_probs=15.9
Q ss_pred CEEEEcCCCChHHHHHHHHH
Q 001261 506 DCIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~ 525 (1112)
.+|++||.|+|||+++.+.+
T Consensus 40 a~Lf~Gp~GvGKttlA~~lA 59 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARVFA 59 (620)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 48899999999998665443
|
|
| >PRK05896 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=87.82 E-value=1.3 Score=54.18 Aligned_cols=21 Identities=24% Similarity=0.094 Sum_probs=16.1
Q ss_pred CCEEEEcCCCChHHHHHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~ 525 (1112)
+.+|+.||.|+|||..+.+.+
T Consensus 39 hA~Lf~GP~GvGKTTlA~~lA 59 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKIFA 59 (605)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 357899999999997655433
|
|
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Probab=87.79 E-value=1.5 Score=56.16 Aligned_cols=55 Identities=20% Similarity=0.350 Sum_probs=31.6
Q ss_pred CcccccccCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHH
Q 001261 464 KPIKTWHQTGLTSKIMETIRKL---NYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 464 ~pi~~~~~~~L~~~l~~~l~~~---~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~ 521 (1112)
.|..+|.+.+....+...|... .+..|.-++... +...+.+|+.||+|+|||+.+
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g---~~~~~giLL~GppGtGKT~la 504 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMG---IRPPKGVLLFGPPGTGKTLLA 504 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEECCCCCCHHHHH
Confidence 3456788887777776665531 222211111110 112356899999999999743
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. |
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=87.75 E-value=1.3 Score=48.39 Aligned_cols=19 Identities=37% Similarity=0.370 Sum_probs=16.8
Q ss_pred HHcCCCEEEEcCCCChHHH
Q 001261 501 IMSGRDCIGVAKTGSGKTL 519 (1112)
Q Consensus 501 il~g~dvii~a~TGsGKT~ 519 (1112)
+-.|+.+++.|+.|+|||+
T Consensus 13 i~~Gqr~~I~G~~G~GKTT 31 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTT 31 (249)
T ss_pred cCCCCEEEEECCCCCCHHH
Confidence 3478899999999999996
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=87.72 E-value=3.3 Score=48.24 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=27.5
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccc-hhHHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT-RELVQQIHS 558 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Pt-reLa~Q~~~ 558 (1112)
+..+.|+|.+|+|||.+ +.-++.++... ..++.+++|-.| ...+..++.
T Consensus 175 ~gSlYVsG~PGtgkt~~-l~rvl~~~~~~-----~~~~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 175 SGSLYVSGQPGTGKTAL-LSRVLDSLSKS-----SKSPVTVYINCTSLTEASAIFK 224 (529)
T ss_pred CcceEeeCCCCcchHHH-HHHHHHhhhhh-----cccceeEEEeeccccchHHHHH
Confidence 46789999999999975 33234333221 224454555444 245554443
|
|
| >PRK03992 proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
Probab=87.70 E-value=1.5 Score=51.51 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=14.2
Q ss_pred CCEEEEcCCCChHHHH
Q 001261 505 RDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~ 520 (1112)
+.+|+.||+|+|||+.
T Consensus 166 ~gvLL~GppGtGKT~l 181 (389)
T PRK03992 166 KGVLLYGPPGTGKTLL 181 (389)
T ss_pred CceEEECCCCCChHHH
Confidence 5699999999999975
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=87.67 E-value=0.92 Score=56.35 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=38.4
Q ss_pred CCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEecccc
Q 001261 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFP 659 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~ 659 (1112)
..--+||||.-|++.+...-..+..++++.+++.++|+.|-+-|
T Consensus 128 ~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 128 EGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred cCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 33469999999999988888889999999999999999998865
|
|
| >PF12846 AAA_10: AAA-like domain | Back alignment and domain information |
|---|
Probab=87.55 E-value=1.5 Score=49.27 Aligned_cols=43 Identities=28% Similarity=0.438 Sum_probs=29.6
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQ 554 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~ 554 (1112)
+.+++++|.||||||+.+. .++..+.. .|..++|+=|..+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~-~l~~~~~~-------~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK-NLLEQLIR-------RGPRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHH-------cCCCEEEEcCCchHHH
Confidence 3578999999999997655 45544443 2567777777655443
|
|
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.45 E-value=4.4 Score=48.45 Aligned_cols=88 Identities=11% Similarity=0.222 Sum_probs=64.0
Q ss_pred eEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEec-----Cccccc-CCCCCccE
Q 001261 716 KILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT-----SVAARG-LDVKELEL 785 (1112)
Q Consensus 716 ~vLIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT-----~v~~~G-lDi~~v~~ 785 (1112)
.+||.++|++-|.++...+... ++.+.+++|+.+...+..-++ + -+.|+||| +.+..| +++..|.+
T Consensus 167 ~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~---~-gvdiviaTPGRl~d~le~g~~~l~~v~y 242 (519)
T KOG0331|consen 167 IVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLE---R-GVDVVIATPGRLIDLLEEGSLNLSRVTY 242 (519)
T ss_pred eEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHh---c-CCcEEEeCChHHHHHHHcCCccccceeE
Confidence 5999999999999999888775 456889999999877665543 3 37899999 445544 78888888
Q ss_pred EEE--------eCCCCCHhHHHHHhcccCC
Q 001261 786 VIN--------FDAPNHYEDYVHRVGRTGR 807 (1112)
Q Consensus 786 VI~--------~d~p~s~~~y~QriGR~gR 807 (1112)
||. .++-..+...++.+++.-|
T Consensus 243 lVLDEADrMldmGFe~qI~~Il~~i~~~~r 272 (519)
T KOG0331|consen 243 LVLDEADRMLDMGFEPQIRKILSQIPRPDR 272 (519)
T ss_pred EEeccHHhhhccccHHHHHHHHHhcCCCcc
Confidence 884 2333345556666666655
|
|
| >TIGR00678 holB DNA polymerase III, delta' subunit | Back alignment and domain information |
|---|
Probab=87.43 E-value=4.5 Score=42.20 Aligned_cols=41 Identities=10% Similarity=0.259 Sum_probs=22.9
Q ss_pred cCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEecc
Q 001261 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSAT 657 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT 657 (1112)
.....+|||||+|.|... ....+...+...++.. +++|.++
T Consensus 94 ~~~~kviiide~~~l~~~-~~~~Ll~~le~~~~~~-~~il~~~ 134 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEA-AANALLKTLEEPPPNT-LFILITP 134 (188)
T ss_pred cCCeEEEEEechhhhCHH-HHHHHHHHhcCCCCCe-EEEEEEC
Confidence 456789999999997542 1223444444433333 3444443
|
At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. |
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=87.41 E-value=2.7 Score=51.37 Aligned_cols=89 Identities=17% Similarity=0.215 Sum_probs=72.5
Q ss_pred hHHHHHHHHHhhhcCCeEEEEeCCHHHHHH----HHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcc-
Q 001261 700 RFLRLLELLGEWYEKGKILIFVHSQEKCDA----LFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVA- 774 (1112)
Q Consensus 700 k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~----l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~- 774 (1112)
-+..++..+.....+.++.+-+||---|++ +..+|...|+.+..+.|.+....|..++....+|.++|+|.|-++
T Consensus 297 TvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi 376 (677)
T COG1200 297 TVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI 376 (677)
T ss_pred HHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh
Confidence 345566666665566799999999755554 555555669999999999999999999999999999999999765
Q ss_pred cccCCCCCccEEEE
Q 001261 775 ARGLDVKELELVIN 788 (1112)
Q Consensus 775 ~~GlDi~~v~~VI~ 788 (1112)
...+++.++-+||.
T Consensus 377 Qd~V~F~~LgLVIi 390 (677)
T COG1200 377 QDKVEFHNLGLVII 390 (677)
T ss_pred hcceeecceeEEEE
Confidence 57899999999985
|
|
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=87.40 E-value=3.6 Score=44.39 Aligned_cols=51 Identities=18% Similarity=0.217 Sum_probs=29.7
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~ 562 (1112)
.|.-+++.|++|+|||+.++..+...+.. +..+++++- .+.+.++...+..
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~--------g~~~~~is~-e~~~~~i~~~~~~ 69 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD--------GDPVIYVTT-EESRESIIRQAAQ 69 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc--------CCeEEEEEc-cCCHHHHHHHHHH
Confidence 45678889999999997555444433321 345666653 3334444444333
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >PRK07993 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=87.39 E-value=4.7 Score=46.28 Aligned_cols=36 Identities=17% Similarity=0.123 Sum_probs=24.6
Q ss_pred ChHHHHHHHHHHH----cCC---CEEEEcCCCChHHHHHHHHH
Q 001261 490 PMPIQAQALPVIM----SGR---DCIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 490 pt~iQ~~ai~~il----~g~---dvii~a~TGsGKT~~~llp~ 525 (1112)
++|+|...|..+. +|+ -.|+.|+.|+||+..+...+
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A 45 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALS 45 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHH
Confidence 4566766666554 443 57899999999997554433
|
|
| >KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.32 E-value=7.3 Score=42.76 Aligned_cols=54 Identities=15% Similarity=0.350 Sum_probs=35.0
Q ss_pred HHHHcCC-----CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 499 PVIMSGR-----DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 499 ~~il~g~-----dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
|.++.|+ .+|+.||.|+||+. |.-++.. ....+++-+.+..|+..|.-+-.++.
T Consensus 156 PqlFtGkR~PwrgiLLyGPPGTGKSY--LAKAVAT----------EAnSTFFSvSSSDLvSKWmGESEkLV 214 (439)
T KOG0739|consen 156 PQLFTGKRKPWRGILLYGPPGTGKSY--LAKAVAT----------EANSTFFSVSSSDLVSKWMGESEKLV 214 (439)
T ss_pred hhhhcCCCCcceeEEEeCCCCCcHHH--HHHHHHh----------hcCCceEEeehHHHHHHHhccHHHHH
Confidence 5556664 48889999999995 3333321 01145777888888887766555543
|
|
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
Probab=87.08 E-value=3.4 Score=53.68 Aligned_cols=19 Identities=21% Similarity=0.225 Sum_probs=15.8
Q ss_pred CCEEEEcCCCChHHHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~ll 523 (1112)
.++|++|++|+|||...-.
T Consensus 200 ~n~lL~G~pGvGKT~l~~~ 218 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVEG 218 (857)
T ss_pred CceEEECCCCCCHHHHHHH
Confidence 5899999999999976543
|
|
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=86.92 E-value=2.8 Score=54.28 Aligned_cols=23 Identities=22% Similarity=0.082 Sum_probs=17.7
Q ss_pred CCCEEEEcCCCChHHHHHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPML 526 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l 526 (1112)
..++|++|++|+|||..+-..+.
T Consensus 200 ~~n~lL~G~pGvGKTal~~~la~ 222 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEGLAQ 222 (821)
T ss_pred cCCeEEECCCCCCHHHHHHHHHH
Confidence 35899999999999976544333
|
|
| >KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.82 E-value=0.47 Score=63.24 Aligned_cols=94 Identities=34% Similarity=0.467 Sum_probs=75.0
Q ss_pred eEEEEeCCHHHHHHHHHHHHhc-CCCeeeecCCCC-----------HHHHHHHHHHhhcCCccEEEecCcccccCCCCCc
Q 001261 716 KILIFVHSQEKCDALFRDLLKH-GYPCLSLHGAKD-----------QTDRESTISDFKSNVCNLLIATSVAARGLDVKEL 783 (1112)
Q Consensus 716 ~vLIF~~s~~~~~~l~~~L~~~-g~~~~~ihg~~~-----------~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v 783 (1112)
..||||+....+..++..+... -+.+..+.|.+. +-.+..++..|....+.+|++|.++..|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 3489999888888888777664 223333444332 2235678889999999999999999999999999
Q ss_pred cEEEEeCCCCCHhHHHHHhcccCCCC
Q 001261 784 ELVINFDAPNHYEDYVHRVGRTGRAG 809 (1112)
Q Consensus 784 ~~VI~~d~p~s~~~y~QriGR~gR~G 809 (1112)
+.||.++.|.....|+|..||+-..+
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccch
Confidence 99999999999999999999987654
|
|
| >KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.79 E-value=2.2 Score=49.83 Aligned_cols=98 Identities=20% Similarity=0.156 Sum_probs=53.0
Q ss_pred ccCCceEEEeccchhhhccC------------ChhHHHHHHHhcCCCCcEEEEecc-ccHHHHHHHHHhcCCCeEEEEcC
Q 001261 614 NLRRVTYLVMDEADRMFDMG------------FEPQITRIVQNIRPDRQTVLFSAT-FPRQVEILARKVLNKPVEIQVGG 680 (1112)
Q Consensus 614 ~l~~i~~vViDEah~~~~~g------------f~~~i~~il~~~~~~~q~il~SAT-~~~~~~~l~~~~~~~p~~i~i~~ 680 (1112)
.....++|+|||+|.++..- -...+..+.....++-++++++|| .|-.+...++..+..-++
T Consensus 242 r~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf~kr~y----- 316 (428)
T KOG0740|consen 242 RSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARRRFVKRLY----- 316 (428)
T ss_pred HhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHHHhhceee-----
Confidence 34457889999999887422 112233333444556689999999 444555444443322221
Q ss_pred cccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHH
Q 001261 681 RSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDL 734 (1112)
Q Consensus 681 ~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L 734 (1112)
+...+...+...+..+|... + .|-+......++...
T Consensus 317 -----------iplPd~etr~~~~~~ll~~~---~----~~l~~~d~~~l~~~T 352 (428)
T KOG0740|consen 317 -----------IPLPDYETRSLLWKQLLKEQ---P----NGLSDLDISLLAKVT 352 (428)
T ss_pred -----------ecCCCHHHHHHHHHHHHHhC---C----CCccHHHHHHHHHHh
Confidence 22334455666666666653 1 133445555555544
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=86.79 E-value=2.3 Score=53.22 Aligned_cols=71 Identities=15% Similarity=0.247 Sum_probs=53.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc-----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-----cccc-cCCCCC
Q 001261 714 KGKILIFVHSQEKCDALFRDLLKH-----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAAR-GLDVKE 782 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~-----g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-----v~~~-GlDi~~ 782 (1112)
..++||.||+++-|.+++..|... ++.++.+||+.+...+...+ . ....|||+|+ .+.+ .+++.+
T Consensus 74 ~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l---~-~~~~IVVgTPgrl~d~l~r~~l~l~~ 149 (629)
T PRK11634 74 APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL---R-QGPQIVVGTPGRLLDHLKRGTLDLSK 149 (629)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcchhh
Confidence 357999999999999988776653 78899999998876554433 2 4578999994 3333 478888
Q ss_pred ccEEEE
Q 001261 783 LELVIN 788 (1112)
Q Consensus 783 v~~VI~ 788 (1112)
+.+||.
T Consensus 150 l~~lVl 155 (629)
T PRK11634 150 LSGLVL 155 (629)
T ss_pred ceEEEe
Confidence 998885
|
|
| >KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.71 E-value=5.8 Score=46.85 Aligned_cols=69 Identities=19% Similarity=0.113 Sum_probs=39.0
Q ss_pred cCCCCHHHHHHHHHCCCCCCh----HHHHHHHHHHHcC--------CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCC
Q 001261 471 QTGLTSKIMETIRKLNYEKPM----PIQAQALPVIMSG--------RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAG 538 (1112)
Q Consensus 471 ~~~L~~~l~~~l~~~~~~~pt----~iQ~~ai~~il~g--------~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~ 538 (1112)
.+|.+..-++.+...|+-.-. .+=..+.-.+.+- ..+|+.||.|||||..+.-.++. .
T Consensus 493 AFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~----------S 562 (744)
T KOG0741|consen 493 AFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALS----------S 562 (744)
T ss_pred ccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhh----------c
Confidence 366776666666655543222 2222222222211 35899999999999654433331 2
Q ss_pred CCCcEEEEccc
Q 001261 539 DGPVGLIMAPT 549 (1112)
Q Consensus 539 ~~~~~LIl~Pt 549 (1112)
.-|.+=|+.|.
T Consensus 563 ~FPFvKiiSpe 573 (744)
T KOG0741|consen 563 DFPFVKIISPE 573 (744)
T ss_pred CCCeEEEeChH
Confidence 35777788884
|
|
| >TIGR02012 tigrfam_recA protein RecA | Back alignment and domain information |
|---|
Probab=86.61 E-value=2.2 Score=48.42 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=26.6
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTREL 552 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreL 552 (1112)
.|+-+++.|++|||||+.++..+. .... .+..|+++..-..+
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~-~~~~-------~g~~v~yId~E~~~ 95 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIA-EAQK-------AGGTAAFIDAEHAL 95 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH-HHHH-------cCCcEEEEcccchh
Confidence 356788899999999975444444 3332 25567777554333
|
This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage. |
| >PRK06090 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=86.59 E-value=2.5 Score=48.02 Aligned_cols=36 Identities=17% Similarity=0.086 Sum_probs=24.5
Q ss_pred ChHHHHHHHHHHH----cCC---CEEEEcCCCChHHHHHHHHH
Q 001261 490 PMPIQAQALPVIM----SGR---DCIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 490 pt~iQ~~ai~~il----~g~---dvii~a~TGsGKT~~~llp~ 525 (1112)
++|+|...+..+. .++ -.|+.|+.|.||+..+...+
T Consensus 4 ~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a 46 (319)
T PRK06090 4 DYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFS 46 (319)
T ss_pred CcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHH
Confidence 4567766666554 443 58899999999996544333
|
|
| >COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=86.56 E-value=1.3 Score=48.19 Aligned_cols=27 Identities=41% Similarity=0.613 Sum_probs=19.9
Q ss_pred CchHHHHHHHhcCCcccccCCceEEEeccchhhh
Q 001261 597 TPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF 630 (1112)
Q Consensus 597 Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~ 630 (1112)
-|+-|..+| ++|..-+++.|||.|+|.
T Consensus 90 K~gDlaaiL-------t~Le~~DVLFIDEIHrl~ 116 (332)
T COG2255 90 KPGDLAAIL-------TNLEEGDVLFIDEIHRLS 116 (332)
T ss_pred ChhhHHHHH-------hcCCcCCeEEEehhhhcC
Confidence 455566666 467777899999999964
|
|
| >PRK07133 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=86.50 E-value=3.8 Score=51.31 Aligned_cols=27 Identities=15% Similarity=0.014 Sum_probs=19.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHHHHHHHH
Q 001261 1068 YLFIEGPTEQSVKRAKAELKRVLEDFT 1094 (1112)
Q Consensus 1068 yl~ie~~~~~~v~~A~~~i~~~~~e~~ 1094 (1112)
|+||-+.|..-...|+...+.+..+..
T Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (725)
T PRK07133 663 PKHIFAISKKLINEAKIYWKAINNTKK 689 (725)
T ss_pred cceEeeccHHHHHHHHHHHHHHHhhcc
Confidence 456666777778888887777766554
|
|
| >PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=86.44 E-value=2.9 Score=50.76 Aligned_cols=40 Identities=10% Similarity=0.180 Sum_probs=25.3
Q ss_pred cCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEe
Q 001261 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~S 655 (1112)
...+.+|||||||+|.... ...+.+++...++...+|+++
T Consensus 115 ~~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 4568899999999875422 234555555555555555544
|
|
| >COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=86.33 E-value=0.59 Score=50.07 Aligned_cols=44 Identities=27% Similarity=0.351 Sum_probs=29.0
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCC-CEEEEcCCCChHHHHHHHHHHHH
Q 001261 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGR-DCIGVAKTGSGKTLAFVLPMLRH 528 (1112)
Q Consensus 465 pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~-dvii~a~TGsGKT~~~llp~l~~ 528 (1112)
.|-+|.+++||+.+.+. .+..+ -+|++|+|||||++. +..|+.+
T Consensus 106 ~IPt~eeL~LPevlk~l-------------------a~~kRGLviiVGaTGSGKSTt-mAaMi~y 150 (375)
T COG5008 106 KIPTFEELKLPEVLKDL-------------------ALAKRGLVIIVGATGSGKSTT-MAAMIGY 150 (375)
T ss_pred cCCcHHhcCCcHHHHHh-------------------hcccCceEEEECCCCCCchhh-HHHHhcc
Confidence 34577888887766542 12223 377889999999976 4455544
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=86.29 E-value=3.6 Score=40.94 Aligned_cols=41 Identities=17% Similarity=0.262 Sum_probs=28.2
Q ss_pred cCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccc
Q 001261 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
+.+-.++|+||.-.-+|......+..++..+. .+|+++..-
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~---~til~~th~ 126 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEYP---GTVILVSHD 126 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHcC---CEEEEEECC
Confidence 34567999999998777766667777776652 355555443
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PF00013 KH_1: KH domain syndrome, contains KH motifs | Back alignment and domain information |
|---|
Probab=86.15 E-value=1.3 Score=36.61 Aligned_cols=44 Identities=23% Similarity=0.323 Sum_probs=36.7
Q ss_pred ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHH
Q 001261 1031 THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAEL 1086 (1112)
Q Consensus 1031 t~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i 1086 (1112)
.++.++.+|.+.|||.|.+... + ..-.+.|.| +...|+.|+..|
T Consensus 17 ~~G~~i~~I~~~t~~~I~i~~~----------~-~~~~v~I~G-~~~~v~~A~~~I 60 (60)
T PF00013_consen 17 KKGSNIKEIEEETGVKIQIPDD----------D-ERDIVTISG-SPEQVEKAKKMI 60 (60)
T ss_dssp GGGHHHHHHHHHHTSEEEEEST----------T-EEEEEEEEE-SHHHHHHHHHHH
T ss_pred CCCCcHHHhhhhcCeEEEEcCC----------C-CcEEEEEEe-CHHHHHHHHhhC
Confidence 4678999999999999998332 2 445889999 999999999876
|
; InterPro: IPR018111 The K homology (KH) domain was first identified in the human heterogeneous nuclear ribonucleoprotein (hnRNP) K. It is a domain of around 70 amino acids that is present in a wide variety of quite diverse nucleic acid-binding proteins []. It has been shown to bind RNA [, ]. Like many other RNA-binding motifs, KH motifs are found in one or multiple copies (14 copies in chicken vigilin) and, at least for hnRNP K (three copies) and FMR-1 (two copies), each motif is necessary for in vitro RNA binding activity, suggesting that they may function cooperatively or, in the case of single KH motif proteins (for example, Mer1p), independently []. According to structural [, , ] analysis the KH domain can be separated in two groups. The first group or type-1 contain a beta-alpha-alpha-beta-beta-alpha structure, whereas in the type-2 the two last beta-sheet are located in the N-terminal part of the domain (alpha-beta-beta-alpha-alpha-beta). Sequence similarity between these two folds are limited to a short region (VIGXXGXXI) in the RNA binding motif. This motif is located between helice 1 and 2 in type-1 and between helice 2 and 3 in type-2. Proteins known to contain a type-1 KH domain include bacterial polyribonucleotide nucleotidyltransferases (2.7.7.8 from EC); vertebrate fragile X mental retardation protein 1 (FMR1); eukaryotic heterogeneous nuclear ribonucleoprotein K (hnRNP K), one of at least 20 major proteins that are part of hnRNP particles in mammalian cells; mammalian poly(rC) binding proteins; Artemia salina glycine-rich protein GRP33; yeast PAB1-binding protein 2 (PBP2); vertebrate vigilin; and human high-density lipoprotein binding protein (HDL-binding protein). More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0003723 RNA binding; PDB: 1TUA_A 2Z0S_A 1WE8_A 4AM3_B 4AIM_A 4AID_A 2HH3_A 2JVZ_A 1J4W_A 2HH2_A .... |
| >PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases | Back alignment and domain information |
|---|
Probab=86.10 E-value=0.94 Score=48.99 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=14.2
Q ss_pred EEEEcCCCChHHHHHHHHHH
Q 001261 507 CIGVAKTGSGKTLAFVLPML 526 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l 526 (1112)
++|.|..|||||.. +.-++
T Consensus 1 ~vv~G~pGsGKSt~-i~~~~ 19 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL-IKKLL 19 (234)
T ss_pred CEEEcCCCCCHHHH-HHHHH
Confidence 47889999999974 44444
|
Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity |
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=86.10 E-value=3.9 Score=49.63 Aligned_cols=59 Identities=17% Similarity=0.170 Sum_probs=39.1
Q ss_pred HHHHHHHc-----CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001261 496 QALPVIMS-----GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 496 ~ai~~il~-----g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
..+..++. |.-+|+.|++|+|||+..+..+...+. +|..||+++ +-+-..|+...+..+
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~--------~ge~~~y~s-~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACA--------NKERAILFA-YEESRAQLLRNAYSW 313 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHH--------CCCeEEEEE-eeCCHHHHHHHHHHc
Confidence 34555553 456888999999999865555544432 356778876 455567777777664
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=85.89 E-value=2.1 Score=52.71 Aligned_cols=41 Identities=20% Similarity=0.334 Sum_probs=28.6
Q ss_pred cCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEe
Q 001261 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~S 655 (1112)
+++-.++|+||+-.-+|......+...+..+.+++-+|+.|
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiIt 526 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVIT 526 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 56678899999988777766777777776665555444443
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=85.87 E-value=3.5 Score=45.77 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=17.6
Q ss_pred HHHHHHcC---CCEEEEcCCCChHHHH
Q 001261 497 ALPVIMSG---RDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 497 ai~~il~g---~dvii~a~TGsGKT~~ 520 (1112)
.++.+... .+++++|++|||||+.
T Consensus 101 ~l~~l~~~~~~~~~~i~g~~g~GKttl 127 (270)
T TIGR02858 101 LLPYLVRNNRVLNTLIISPPQCGKTTL 127 (270)
T ss_pred HHHHHHhCCCeeEEEEEcCCCCCHHHH
Confidence 35555533 5789999999999963
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.77 E-value=4.2 Score=46.32 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=14.5
Q ss_pred CCEEEEcCCCChHHHH
Q 001261 505 RDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~ 520 (1112)
+++++.||+|+|||+.
T Consensus 385 RNilfyGPPGTGKTm~ 400 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMF 400 (630)
T ss_pred hheeeeCCCCCCchHH
Confidence 6899999999999974
|
|
| >PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin | Back alignment and domain information |
|---|
Probab=85.75 E-value=0.65 Score=47.93 Aligned_cols=47 Identities=21% Similarity=0.299 Sum_probs=29.9
Q ss_pred HHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhc
Q 001261 584 ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD 631 (1112)
Q Consensus 584 ~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~ 631 (1112)
...+...++|||+++..|++-.......... ..-.+|||||||.|.+
T Consensus 113 ~r~~~~~adivi~~y~yl~~~~~~~~~~~~~-~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 113 ARELAKNADIVICNYNYLFDPSIRKSLFGID-LKDNIVIFDEAHNLED 159 (174)
T ss_dssp HHHCGGG-SEEEEETHHHHSHHHHHHHCT---CCCEEEEETTGGGCGG
T ss_pred HHHhcccCCEEEeCHHHHhhHHHHhhhcccc-ccCcEEEEecccchHH
Confidence 3455567899999999887654332111112 3447999999999865
|
RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A. |
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Probab=85.70 E-value=3.7 Score=52.59 Aligned_cols=18 Identities=28% Similarity=0.410 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCChHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~ 520 (1112)
.++.+|+.||+|+|||+.
T Consensus 211 ~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCceEEEECCCCCChHHH
Confidence 457799999999999964
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. |
| >KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.68 E-value=7.2 Score=44.39 Aligned_cols=131 Identities=17% Similarity=0.194 Sum_probs=74.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc-c-chhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH
Q 001261 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA-P-TRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI 584 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~-P-treLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~ 584 (1112)
++++|=-|+|||++..-.++++ . ..|.+++++| - .|+-|. ..++..+...++.+...|.......
T Consensus 104 imfVGLqG~GKTTtc~KlA~y~-k-------kkG~K~~LvcaDTFRagAf---DQLkqnA~k~~iP~ygsyte~dpv~-- 170 (483)
T KOG0780|consen 104 IMFVGLQGSGKTTTCTKLAYYY-K-------KKGYKVALVCADTFRAGAF---DQLKQNATKARVPFYGSYTEADPVK-- 170 (483)
T ss_pred EEEEeccCCCcceeHHHHHHHH-H-------hcCCceeEEeecccccchH---HHHHHHhHhhCCeeEecccccchHH--
Confidence 6678999999998766555544 2 2356666666 2 343333 4455544445555544333222111
Q ss_pred HHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhc-cCChhHHHHHHHhcCCCCcEEEEeccccHHHH
Q 001261 585 SELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQVE 663 (1112)
Q Consensus 585 ~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~-~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~ 663 (1112)
|+.-| +.. +.-.++++||+|=.-|.-. .+....+..+...+.|+--++++-|++-...+
T Consensus 171 ----------ia~eg-----v~~-----fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae 230 (483)
T KOG0780|consen 171 ----------IASEG-----VDR-----FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAE 230 (483)
T ss_pred ----------HHHHH-----HHH-----HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHH
Confidence 11111 000 1223466777776665332 22445677788888898888889999887777
Q ss_pred HHHHHhc
Q 001261 664 ILARKVL 670 (1112)
Q Consensus 664 ~l~~~~~ 670 (1112)
..++.|-
T Consensus 231 ~Qa~aFk 237 (483)
T KOG0780|consen 231 AQARAFK 237 (483)
T ss_pred HHHHHHH
Confidence 6666654
|
|
| >PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability [] | Back alignment and domain information |
|---|
Probab=85.62 E-value=16 Score=41.71 Aligned_cols=232 Identities=13% Similarity=0.159 Sum_probs=113.0
Q ss_pred CEEEEc---CCCChHHHHHHHHHHHHHhcCCC----CCCCCCC----cEEEEccchhHHHHHHHHHHHHhhhcCceEEEE
Q 001261 506 DCIGVA---KTGSGKTLAFVLPMLRHIKDQPP----VAAGDGP----VGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPV 574 (1112)
Q Consensus 506 dvii~a---~TGsGKT~~~llp~l~~l~~~~~----~~~~~~~----~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~ 574 (1112)
-||.+| -=|+|||- +.+.++..+..+.. +..|+|. ..+++.+.. -+.++-++---++..++ +.++
T Consensus 36 pVIsVGNltvGGTGKTP-~v~~L~~~L~~~G~~~~IlSRGYg~~~~~~~~~v~~~~-~~~~~GDEp~lla~~~~--~~V~ 111 (326)
T PF02606_consen 36 PVISVGNLTVGGTGKTP-LVIWLARLLQARGYRPAILSRGYGRKSKGEPILVSDGS-DAEEVGDEPLLLARKLP--VPVI 111 (326)
T ss_pred cEEEEcccccCCCCchH-HHHHHHHHHHhcCCceEEEcCCCCCCCCCCeEEEeCCC-ChhhhcCHHHHHHHhcC--CcEE
Confidence 466665 34899995 46666666665411 1223321 255666655 56666666666666666 2223
Q ss_pred eCCCChHHHHHHHhc--CCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhH--HHHHHHhcCCCCc
Q 001261 575 YGGSGVAQQISELKR--GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQ--ITRIVQNIRPDRQ 650 (1112)
Q Consensus 575 ~gg~~~~~~~~~l~~--~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~--i~~il~~~~~~~q 650 (1112)
+| .....-+..+.. +++|||+-.|.= + ..--.++.+|++|-.+-+.+-...+. +..-+..+. ..-
T Consensus 112 V~-~dR~~~~~~~~~~~~~dviilDDGfQ------h---~~L~rDl~Ivl~D~~~~~gng~lLPaG~LREp~~~l~-rAD 180 (326)
T PF02606_consen 112 VG-PDRVAAARAALKEFPADVIILDDGFQ------H---RRLKRDLDIVLVDADRPFGNGFLLPAGPLREPLSALK-RAD 180 (326)
T ss_pred Ee-CcHHHHHHHHHHHCCCCEEEEcCCcc------c---ccccCCcEEEEEeCCCCCcCCccCCCCcccCChhHhC-ccc
Confidence 33 333333333222 478888876621 1 11235788899997553332111110 111111121 123
Q ss_pred EEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHH
Q 001261 651 TVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDAL 730 (1112)
Q Consensus 651 ~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l 730 (1112)
+|+++.................|+....-.. ..+ .... ... .....+.+++.|| ....-+.+
T Consensus 181 ~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~----~~~---~~~~-~~~---------~~~l~~~~v~a~s-GIg~P~~F 242 (326)
T PF02606_consen 181 AVIVTGCDASDPAIEKAIRPGKPIFSARLKP----EGL---RNLN-TGS---------IEPLKGKPVLAFS-GIGNPERF 242 (326)
T ss_pred EEEEcCCCcchhHHHHhhhcCCceEEEEEEe----ccc---cccc-ccc---------hhhccCCeeEEEE-EcCChHHH
Confidence 4555544332222111111233332110000 000 0000 000 0012345676666 56666777
Q ss_pred HHHHHhcCCCee-----eecCCCCHHHHHHHHHHhhcCCccEEEecC
Q 001261 731 FRDLLKHGYPCL-----SLHGAKDQTDRESTISDFKSNVCNLLIATS 772 (1112)
Q Consensus 731 ~~~L~~~g~~~~-----~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~ 772 (1112)
...|...|+.+. .=|-..+..+-..+...++... +||+|.
T Consensus 243 ~~~L~~~G~~~~~~~~f~DHh~yt~~dl~~l~~~a~~~~--~iltTe 287 (326)
T PF02606_consen 243 FDTLESLGIEVVGTLAFPDHHRYTEQDLEKLEAEAKAAG--IILTTE 287 (326)
T ss_pred HHHHHHcCCeEEEeeECCCCCCCCHHHHHHHHHhhcccc--eEEecH
Confidence 788888877655 2377788888888877776544 889983
|
This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process |
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=85.57 E-value=1.9 Score=49.82 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=19.3
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHh
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIK 530 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~ 530 (1112)
.+..++++|+||||||+. +..++.++.
T Consensus 121 ~~g~ili~G~tGSGKTT~-l~al~~~i~ 147 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTT-LASMIDYIN 147 (343)
T ss_pred cCcEEEEECCCCCCHHHH-HHHHHHhhC
Confidence 355688999999999975 444555543
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >PRK14953 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=85.55 E-value=3.1 Score=50.26 Aligned_cols=19 Identities=26% Similarity=0.211 Sum_probs=14.7
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 001261 507 CIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~ 525 (1112)
.|+.|+.|+|||+++.+.+
T Consensus 41 yLf~Gp~G~GKTtlAr~lA 59 (486)
T PRK14953 41 YIFAGPRGTGKTTIARILA 59 (486)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999997655433
|
|
| >PRK00440 rfc replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=85.49 E-value=7.6 Score=44.10 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=23.9
Q ss_pred CceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEe
Q 001261 617 RVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~S 655 (1112)
...+|||||+|.+... ....+..++....+...+|+.+
T Consensus 102 ~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEe
Confidence 3579999999987542 2334555666655555555544
|
|
| >PRK05973 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=85.36 E-value=1.3 Score=47.90 Aligned_cols=65 Identities=20% Similarity=0.297 Sum_probs=38.3
Q ss_pred CChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001261 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
.+||... .+.-+..|.-++|.|++|+|||+..+..+...+. +|..++|++- -+-..|+...+..+
T Consensus 50 ~~~p~~~-l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~--------~Ge~vlyfSl-Ees~~~i~~R~~s~ 114 (237)
T PRK05973 50 ATTPAEE-LFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMK--------SGRTGVFFTL-EYTEQDVRDRLRAL 114 (237)
T ss_pred CCCCHHH-hcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHh--------cCCeEEEEEE-eCCHHHHHHHHHHc
Confidence 4455222 3333445667888999999999765555554432 2556777763 22245665666554
|
|
| >PRK14971 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=85.34 E-value=4.9 Score=50.06 Aligned_cols=43 Identities=7% Similarity=0.128 Sum_probs=25.3
Q ss_pred ccCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccc
Q 001261 614 NLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 614 ~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
.+....+|||||+|.|.... ...+..++...+... +++|.+|-
T Consensus 118 ~~~~~KVvIIdea~~Ls~~a-~naLLK~LEepp~~t-ifIL~tt~ 160 (614)
T PRK14971 118 QIGKYKIYIIDEVHMLSQAA-FNAFLKTLEEPPSYA-IFILATTE 160 (614)
T ss_pred ccCCcEEEEEECcccCCHHH-HHHHHHHHhCCCCCe-EEEEEeCC
Confidence 45578899999999985422 233444555443333 44455553
|
|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=85.30 E-value=4.8 Score=42.37 Aligned_cols=71 Identities=13% Similarity=0.148 Sum_probs=51.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc-----cc-ccCCCCCc
Q 001261 714 KGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-----AA-RGLDVKEL 783 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v-----~~-~GlDi~~v 783 (1112)
..++||+|++..-+..+...+... ++.+..++|+.+.......+. +...|+|+|.- +. .-++++++
T Consensus 69 ~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~l 144 (203)
T cd00268 69 GPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSKV 144 (203)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhhC
Confidence 457999999999988887776554 678889999998766543332 66789999942 22 22567778
Q ss_pred cEEEE
Q 001261 784 ELVIN 788 (1112)
Q Consensus 784 ~~VI~ 788 (1112)
.+||.
T Consensus 145 ~~lIv 149 (203)
T cd00268 145 KYLVL 149 (203)
T ss_pred CEEEE
Confidence 88774
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=85.26 E-value=3.5 Score=53.40 Aligned_cols=90 Identities=9% Similarity=0.159 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHh-hhcCCeEEEEeCCHHHHHHHHHHHHh----cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-
Q 001261 699 DRFLRLLELLGE-WYEKGKILIFVHSQEKCDALFRDLLK----HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS- 772 (1112)
Q Consensus 699 ~k~~~ll~~l~~-~~~~~~vLIF~~s~~~~~~l~~~L~~----~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~- 772 (1112)
.|....+...-. ...+.+|.|+|||.--|++-++.|.+ .++++..+.--.+..+...+++..++|.++|||.|-
T Consensus 627 GKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr 706 (1139)
T COG1197 627 GKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR 706 (1139)
T ss_pred cHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH
Confidence 455444443333 33456899999998888777777765 467788899999999999999999999999999994
Q ss_pred cccccCCCCCccEEEE
Q 001261 773 VAARGLDVKELELVIN 788 (1112)
Q Consensus 773 v~~~GlDi~~v~~VI~ 788 (1112)
++..+|-+.++-+||.
T Consensus 707 LL~kdv~FkdLGLlII 722 (1139)
T COG1197 707 LLSKDVKFKDLGLLII 722 (1139)
T ss_pred hhCCCcEEecCCeEEE
Confidence 6778999999999986
|
|
| >PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues | Back alignment and domain information |
|---|
Probab=85.23 E-value=0.97 Score=54.71 Aligned_cols=47 Identities=28% Similarity=0.400 Sum_probs=34.0
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIR 561 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~ 561 (1112)
.+++++|+||||||..|++|.+.. . ..-++|+=|--+|+......++
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~---~-------~~s~iV~D~KgEl~~~t~~~r~ 91 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN---Y-------PGSMIVTDPKGELYEKTAGYRK 91 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh---c-------cCCEEEEECCCcHHHHHHHHHH
Confidence 479999999999999999997732 1 1145677788888765444333
|
These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane |
| >COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=85.19 E-value=11 Score=39.75 Aligned_cols=144 Identities=11% Similarity=0.134 Sum_probs=71.1
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc---cchhHHHHHHHHHHHHhhhc---CceEEEE-eCCC
Q 001261 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA---PTRELVQQIHSDIRKFAKVM---GVRCVPV-YGGS 578 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~---PtreLa~Q~~~~~~~~~~~~---~i~~~~~-~gg~ 578 (1112)
=+++-|+.|+|||+.....++-.+. ++..+.+++ |+++...|+...=-.+...+ .+.++.+ ..+.
T Consensus 30 L~lIEGd~~tGKSvLsqr~~YG~L~--------~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~ 101 (235)
T COG2874 30 LILIEGDNGTGKSVLSQRFAYGFLM--------NGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPV 101 (235)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHh--------CCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEeccccc
Confidence 4778899999999754444443332 355667766 66777666643211111111 1111111 0111
Q ss_pred ChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhc---CCCCcEEEEe
Q 001261 579 GVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI---RPDRQTVLFS 655 (1112)
Q Consensus 579 ~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~---~~~~q~il~S 655 (1112)
..... +-..+++.+... ....+-++||||=...+.-..-...+..++..+ -..-.+|++|
T Consensus 102 ~~~~~-------------~~~~~L~~l~~~----~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIilT 164 (235)
T COG2874 102 NWGRR-------------SARKLLDLLLEF----IKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIILT 164 (235)
T ss_pred ccChH-------------HHHHHHHHHHhh----HHhhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 11100 011233333322 224566799999988665433233444444433 3456799999
Q ss_pred ccc---cHHHHHHHHHhcCCCe
Q 001261 656 ATF---PRQVEILARKVLNKPV 674 (1112)
Q Consensus 656 AT~---~~~~~~l~~~~~~~p~ 674 (1112)
+.+ +..+...++..+.-.+
T Consensus 165 vhp~~l~e~~~~rirs~~d~~l 186 (235)
T COG2874 165 VHPSALDEDVLTRIRSACDVYL 186 (235)
T ss_pred eChhhcCHHHHHHHHHhhheeE
Confidence 874 3444444444444333
|
|
| >PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] | Back alignment and domain information |
|---|
Probab=85.17 E-value=0.33 Score=49.80 Aligned_cols=118 Identities=19% Similarity=0.246 Sum_probs=51.6
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEcc-chhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH
Q 001261 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP-TRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI 584 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~P-treLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~ 584 (1112)
.+++.|+.|+|||+. +.-++..+.... -+.+=|++| .++ -....|+.++.+..|.... +
T Consensus 1 ~i~iTG~pG~GKTTl-l~k~i~~l~~~~------~~v~Gf~t~evr~-----------~g~r~GF~iv~l~~g~~~~--l 60 (168)
T PF03266_consen 1 HIFITGPPGVGKTTL-LKKVIEELKKKG------LPVGGFYTEEVRE-----------NGRRIGFDIVDLNSGEEAI--L 60 (168)
T ss_dssp EEEEES-TTSSHHHH-HHHHHHHHHHTC------GGEEEEEEEEEET-----------TSSEEEEEEEET-TS-EEE--E
T ss_pred CEEEECcCCCCHHHH-HHHHHHHhhccC------CccceEEeecccC-----------CCceEEEEEEECcCCCccc--c
Confidence 378999999999975 455666665421 122233333 221 1112234444432221000 0
Q ss_pred HHHhcCCeEEEeCchHHHHHHHhcCCcccc--cCCceEEEeccchhhh--ccCChhHHHHHHH
Q 001261 585 SELKRGTEIVVCTPGRMIDILCTSGGKITN--LRRVTYLVMDEADRMF--DMGFEPQITRIVQ 643 (1112)
Q Consensus 585 ~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~--l~~i~~vViDEah~~~--~~gf~~~i~~il~ 643 (1112)
........+-++.+....+.+..-...... +...++|||||+=.|- ..+|...+..++.
T Consensus 61 a~~~~~~~~~vgky~v~~e~fe~~~~~~L~~~~~~~~liviDEIG~mEl~~~~F~~~v~~~l~ 123 (168)
T PF03266_consen 61 ARVDFRSGPRVGKYFVDLESFEEIGLPALRNALSSSDLIVIDEIGKMELKSPGFREAVEKLLD 123 (168)
T ss_dssp EETTSS-SCECTTCEE-HHHHHCCCCCCCHHHHHCCHEEEE---STTCCC-CHHHHHHHHHHC
T ss_pred ccccccccccCCCEEEcHHHHHHHHHHHHHhhcCCCCEEEEeccchhhhcCHHHHHHHHHHHc
Confidence 000011233444444443444332222222 2567899999999763 3446666666665
|
It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A. |
| >PHA00012 I assembly protein | Back alignment and domain information |
|---|
Probab=85.16 E-value=7.8 Score=43.55 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=20.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhc
Q 001261 507 CIGVAKTGSGKTLAFVLPMLRHIKD 531 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~ 531 (1112)
-++.|..|||||+.++..++..+..
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~ 28 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVK 28 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHc
Confidence 5788999999999888777666554
|
|
| >PRK07413 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=84.97 E-value=6.5 Score=45.43 Aligned_cols=52 Identities=13% Similarity=0.282 Sum_probs=42.0
Q ss_pred CCceEEEeccchhhhccCCh--hHHHHHHHhcCCCCcEEEEeccccHHHHHHHH
Q 001261 616 RRVTYLVMDEADRMFDMGFE--PQITRIVQNIRPDRQTVLFSATFPRQVEILAR 667 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~gf~--~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~ 667 (1112)
..+++|||||+-..++.|+. ..+..++...++..-+|++.-.+|+.+..++.
T Consensus 124 g~ydlvILDEi~~Al~~gll~~eevl~~L~~rP~~~evVLTGR~ap~~Lie~AD 177 (382)
T PRK07413 124 GLYSVVVLDELNPVLDLGLLPVDEVVNTLKSRPEGLEIIITGRAAPQSLLDIAD 177 (382)
T ss_pred CCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHhCC
Confidence 56899999999998888855 45777888888888888888888888776654
|
|
| >KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=84.91 E-value=1.3 Score=56.87 Aligned_cols=95 Identities=23% Similarity=0.217 Sum_probs=77.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCC
Q 001261 714 KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPN 793 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~ 793 (1112)
..++|||+.-....+.+...+...++.+...-++- +-...+..|++ .-.+||-+...+-|+|+-+..+|+..++-.
T Consensus 1221 qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t~---d~~dc~~~fk~-I~clll~~~~~~~GLNL~eA~Hvfl~ePiL 1296 (1394)
T KOG0298|consen 1221 QEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGETE---DFDDCIICFKS-IDCLLLFVSKGSKGLNLIEATHVFLVEPIL 1296 (1394)
T ss_pred CceEEEEEehHHHHHHHHHHHHhhhhHhhhccCCc---chhhhhhhccc-ceEEEEEeccCcccccHHhhhhhheecccc
Confidence 35899999999888888888887777665544433 33556677766 444677888899999999999999999999
Q ss_pred CHhHHHHHhcccCCCCCcc
Q 001261 794 HYEDYVHRVGRTGRAGRKG 812 (1112)
Q Consensus 794 s~~~y~QriGR~gR~G~~g 812 (1112)
++.+-.|.+||+.|.|++-
T Consensus 1297 N~~~E~QAigRvhRiGQ~~ 1315 (1394)
T KOG0298|consen 1297 NPGDEAQAIGRVHRIGQKR 1315 (1394)
T ss_pred CchHHHhhhhhhhhccccc
Confidence 9999999999999999764
|
|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=84.91 E-value=4 Score=56.19 Aligned_cols=61 Identities=10% Similarity=0.163 Sum_probs=53.4
Q ss_pred cCCeEEEEeCCHHHHHHHHHHHHhc------CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc
Q 001261 713 EKGKILIFVHSQEKCDALFRDLLKH------GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV 773 (1112)
Q Consensus 713 ~~~~vLIF~~s~~~~~~l~~~L~~~------g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v 773 (1112)
.+.++||.+||+.-+.+++..|... ++.+..+||+++..++..++..+.+|..+|||+|+-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 3458999999999999998888763 467789999999999999999999999999999964
|
|
| >KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=84.85 E-value=14 Score=46.38 Aligned_cols=104 Identities=18% Similarity=0.212 Sum_probs=66.5
Q ss_pred eEEEEeCCHHHHHHHHHHHHhc-------CCCeeeecCCCCHHHHHHHHHHhhcC--------CccEEEecCcccccCCC
Q 001261 716 KILIFVHSQEKCDALFRDLLKH-------GYPCLSLHGAKDQTDRESTISDFKSN--------VCNLLIATSVAARGLDV 780 (1112)
Q Consensus 716 ~vLIF~~s~~~~~~l~~~L~~~-------g~~~~~ihg~~~~~~R~~~~~~F~~g--------~~~VLVaT~v~~~GlDi 780 (1112)
.+|||+++....+.+...+... ++.-+.+ .-.+...-..++..|.++ ..-+.||-.-+++|||+
T Consensus 563 G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~v-EPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGlDF 641 (945)
T KOG1132|consen 563 GLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVV-EPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGLDF 641 (945)
T ss_pred ceEEeccchHHHHHHHHHHHcchHHHHhhcccCcee-ccCCccchHHHHHHHHHHhhCccccceEEEEEecccccCCCCc
Confidence 4999999998888885555432 2222222 222334445566666533 33466788899999999
Q ss_pred CC--ccEEEEeCCCCC------------------------------Hh--------HHHHHhcccCCCCCccEEEEEecC
Q 001261 781 KE--LELVINFDAPNH------------------------------YE--------DYVHRVGRTGRAGRKGCAITFISE 820 (1112)
Q Consensus 781 ~~--v~~VI~~d~p~s------------------------------~~--------~y~QriGR~gR~G~~g~~i~~~~~ 820 (1112)
.+ ...||..++|.- .+ ...|.+||+-|.-+.=.+++|++.
T Consensus 642 sD~~~RaVI~tGlPyP~~~D~~V~lK~~y~D~~~~~~g~~s~~lsg~eWY~~qA~RAvNQAiGRviRHR~D~Gav~l~D~ 721 (945)
T KOG1132|consen 642 SDDNGRAVIITGLPYPPVMDPRVKLKKQYLDENSSLKGAKSQLLSGQEWYSQQAYRAVNQAIGRVIRHRNDYGAVILCDD 721 (945)
T ss_pred cccCCceeEEecCCCCCCCCHHHHHHHHhhhhhccccccccccccchHHHHhhHHHHHHHHHHHHHhhhcccceeeEeec
Confidence 76 778898888641 11 225889999997665445556654
|
|
| >PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
|---|
Probab=84.59 E-value=1.8 Score=49.60 Aligned_cols=18 Identities=22% Similarity=0.135 Sum_probs=15.1
Q ss_pred CCEEEEcCCCChHHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~l 522 (1112)
..+|+.||+|+|||..+.
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 468999999999997544
|
|
| >cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response | Back alignment and domain information |
|---|
Probab=84.43 E-value=1.7 Score=49.39 Aligned_cols=42 Identities=19% Similarity=0.103 Sum_probs=27.8
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa 553 (1112)
|+-+.+.||.|||||+.++..+... .. .+..|+++.+--.+-
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~-~~-------~g~~~vyId~E~~~~ 96 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEA-QK-------LGGTVAFIDAEHALD 96 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-HH-------cCCCEEEECccccHH
Confidence 5678889999999996544444433 32 256788887655444
|
RecA couples ATP hydrolysis to DNA strand exchange. |
| >PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging [] | Back alignment and domain information |
|---|
Probab=84.22 E-value=2.8 Score=46.19 Aligned_cols=41 Identities=15% Similarity=0.327 Sum_probs=24.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHH
Q 001261 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa 553 (1112)
.+|.|||||||+- ++--++.. ..+ ....-.|++|+|+...+
T Consensus 90 ~~VYGPTG~GKSq-LlRNLis~----~lI-~P~PETVfFItP~~~mI 130 (369)
T PF02456_consen 90 GVVYGPTGSGKSQ-LLRNLISC----QLI-QPPPETVFFITPQKDMI 130 (369)
T ss_pred EEEECCCCCCHHH-HHHHhhhc----Ccc-cCCCCceEEECCCCCCC
Confidence 5667999999993 34333322 111 12234688999987553
|
During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription |
| >COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=84.10 E-value=1.4 Score=49.92 Aligned_cols=40 Identities=28% Similarity=0.207 Sum_probs=28.6
Q ss_pred CCChHHHHH-HHHHHHcCCCEEEEcCCCChHHHHHHHHHHHH
Q 001261 488 EKPMPIQAQ-ALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRH 528 (1112)
Q Consensus 488 ~~pt~iQ~~-ai~~il~g~dvii~a~TGsGKT~~~llp~l~~ 528 (1112)
..+++.|.. .|-++..+++++++|+||||||.. +.+++..
T Consensus 126 gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~ 166 (312)
T COG0630 126 GTISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDF 166 (312)
T ss_pred CCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHh
Confidence 345566654 455666889999999999999964 5555544
|
|
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.04 E-value=0.4 Score=47.78 Aligned_cols=120 Identities=18% Similarity=0.257 Sum_probs=59.5
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI 584 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~ 584 (1112)
..+++.|++|+|||+. ++-+...+.... -..+=|++|- +..=.+..|++++.+..|... ++
T Consensus 6 mki~ITG~PGvGKtTl-~~ki~e~L~~~g------~kvgGf~t~E----------VR~gGkR~GF~Ivdl~tg~~~--~l 66 (179)
T COG1618 6 MKIFITGRPGVGKTTL-VLKIAEKLREKG------YKVGGFITPE----------VREGGKRIGFKIVDLATGEEG--IL 66 (179)
T ss_pred eEEEEeCCCCccHHHH-HHHHHHHHHhcC------ceeeeEEeee----------eecCCeEeeeEEEEccCCceE--EE
Confidence 3578899999999974 555555555431 1123356662 223334456777666543211 00
Q ss_pred HHHhcCCeEEEeCchHHHHHHHhcCCc-c-cccCCceEEEeccchhhh--ccCChhHHHHHHHh
Q 001261 585 SELKRGTEIVVCTPGRMIDILCTSGGK-I-TNLRRVTYLVMDEADRMF--DMGFEPQITRIVQN 644 (1112)
Q Consensus 585 ~~l~~~~~IvV~Tp~~L~~~l~~~~~~-~-~~l~~i~~vViDEah~~~--~~gf~~~i~~il~~ 644 (1112)
... .....-|+-++...+.+..-... + -.+..-++|||||.--|- ...|...+..++..
T Consensus 67 a~~-~~~~~rvGkY~V~v~~le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~ 129 (179)
T COG1618 67 ARV-GFSRPRVGKYGVNVEGLEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKS 129 (179)
T ss_pred EEc-CCCCcccceEEeeHHHHHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcC
Confidence 000 00223344444443333211000 0 013345899999999653 33355566655544
|
|
| >COG1660 Predicted P-loop-containing kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.94 E-value=7.6 Score=42.01 Aligned_cols=26 Identities=23% Similarity=0.149 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHHHhcC-CCeeeecCCC
Q 001261 723 SQEKCDALFRDLLKHG-YPCLSLHGAK 748 (1112)
Q Consensus 723 s~~~~~~l~~~L~~~g-~~~~~ihg~~ 748 (1112)
|+.-++.|+.+|+..+ +.+...|-++
T Consensus 257 SV~iae~La~~l~~~~~~~v~v~HRd~ 283 (286)
T COG1660 257 SVYIAEQLAEYLRARGKYNVQVRHRDL 283 (286)
T ss_pred hHHHHHHHHHHHHhccCceEEEeehhh
Confidence 5778899999998874 4788888654
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=83.88 E-value=8.9 Score=47.90 Aligned_cols=76 Identities=13% Similarity=0.089 Sum_probs=63.0
Q ss_pred cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCccc------ccCCCCCccEE
Q 001261 713 EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA------RGLDVKELELV 786 (1112)
Q Consensus 713 ~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~------~GlDi~~v~~V 786 (1112)
..+.+||.+|+..-+......|...|+.+..+||+++..++..++..+..|..+||++|+--- .-+....+.+|
T Consensus 52 ~~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~i 131 (591)
T TIGR01389 52 LKGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALV 131 (591)
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEE
Confidence 357899999999999988899999999999999999999999999999999999999884221 22344567777
Q ss_pred EE
Q 001261 787 IN 788 (1112)
Q Consensus 787 I~ 788 (1112)
|.
T Consensus 132 Vi 133 (591)
T TIGR01389 132 AV 133 (591)
T ss_pred EE
Confidence 74
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion | Back alignment and domain information |
|---|
Probab=83.80 E-value=0.84 Score=53.66 Aligned_cols=42 Identities=26% Similarity=0.323 Sum_probs=31.2
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHH
Q 001261 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIH 557 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~ 557 (1112)
+++++|+||||||.++++|.+.. . +..++|+=|--+|.....
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~---~-------~~s~vv~D~Kge~~~~t~ 42 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLT---W-------PGSVVVLDPKGENFELTS 42 (384)
T ss_pred CeeEecCCCCCCccEEEccchhc---C-------CCCEEEEccchhHHHHHH
Confidence 47899999999999999887642 1 234677778888875443
|
These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence. |
| >KOG0347 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=83.78 E-value=1.9 Score=50.81 Aligned_cols=69 Identities=12% Similarity=0.177 Sum_probs=54.5
Q ss_pred eEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-----ccccc----CCCCC
Q 001261 716 KILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAARG----LDVKE 782 (1112)
Q Consensus 716 ~vLIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-----v~~~G----lDi~~ 782 (1112)
-.|||.+|++-|.+++..|... ++.+..|.|||....+++++.. ...|+|||+ ++..+ =++..
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATPGRlweli~e~n~~l~~~k~ 340 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATPGRLWELIEEDNTHLGNFKK 340 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecchHHHHHHHhhhhhhhhhhh
Confidence 3799999999999999999763 8999999999999999988876 678999994 22221 14556
Q ss_pred ccEEEE
Q 001261 783 LELVIN 788 (1112)
Q Consensus 783 v~~VI~ 788 (1112)
+.++|.
T Consensus 341 vkcLVl 346 (731)
T KOG0347|consen 341 VKCLVL 346 (731)
T ss_pred ceEEEE
Confidence 777664
|
|
| >KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.77 E-value=2.9 Score=51.18 Aligned_cols=229 Identities=16% Similarity=0.183 Sum_probs=115.7
Q ss_pred CCChHHHHHHHHHHHc--------CC-C-EEEE--cCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHH
Q 001261 488 EKPMPIQAQALPVIMS--------GR-D-CIGV--AKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQ 555 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~--------g~-d-vii~--a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q 555 (1112)
..++..|.+++-...+ |. - .||- |..|-|.|++-+ |+...+. -..++|.+.-+..|-..
T Consensus 263 g~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgi--IfeNyLk-------GRKrAlW~SVSsDLKfD 333 (1300)
T KOG1513|consen 263 GHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGI--IFENYLK-------GRKRALWFSVSSDLKFD 333 (1300)
T ss_pred cchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEE--Eehhhhc-------ccceeEEEEeccccccc
Confidence 3566788888766543 32 2 3333 345666676433 3332222 13568888887778766
Q ss_pred HHHHHHHHhhhcCceEEEEe----CCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcc-ccc---------CCceEE
Q 001261 556 IHSDIRKFAKVMGVRCVPVY----GGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKI-TNL---------RRVTYL 621 (1112)
Q Consensus 556 ~~~~~~~~~~~~~i~~~~~~----gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~-~~l---------~~i~~v 621 (1112)
....+..+.. .+|.|..+. +..+..+. ...+ -.||+||+..|+-.....+++. +-| +-=++|
T Consensus 334 AERDL~DigA-~~I~V~alnK~KYakIss~en-~n~k--rGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvI 409 (1300)
T KOG1513|consen 334 AERDLRDIGA-TGIAVHALNKFKYAKISSKEN-TNTK--RGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVI 409 (1300)
T ss_pred hhhchhhcCC-CCccceehhhccccccccccc-CCcc--ceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeE
Confidence 6666666433 345554331 11110000 1111 3699999988865443221111 111 112689
Q ss_pred Eeccchhhhcc---C------ChhHHHHHHHhcCCCCcEEEEeccc---cHHHHHHHHHhcCCCeEEEEcCcccccCCcc
Q 001261 622 VMDEADRMFDM---G------FEPQITRIVQNIRPDRQTVLFSATF---PRQVEILARKVLNKPVEIQVGGRSVVNKDIT 689 (1112)
Q Consensus 622 ViDEah~~~~~---g------f~~~i~~il~~~~~~~q~il~SAT~---~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~ 689 (1112)
|+||||+-.+. + -+..+..+-+.+ |+..+|.-|||= |.++..+.+..+-.+ ..
T Consensus 410 vfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~L-P~ARVVYASATGAsEPrNMaYM~RLGlWGe--------gt------ 474 (1300)
T KOG1513|consen 410 VFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKL-PNARVVYASATGASEPRNMAYMVRLGLWGE--------GT------ 474 (1300)
T ss_pred EehhhhhhcccccccCCCcCcccHhHHHHHHhC-CCceEEEeeccCCCCcchhhhhhhhccccC--------CC------
Confidence 99999975441 1 233444444445 556689999983 444443333222111 00
Q ss_pred EEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHH
Q 001261 690 QLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQT 751 (1112)
Q Consensus 690 q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~ 751 (1112)
.-.-|..++..+....-+.--||-+..+-....++..|.-.|+.+.+-.=.|+.+
T Consensus 475 -------af~eF~eFi~AvEkRGvGAMEIVAMDMK~rGmYiARQLSFkgVsFrieEv~ls~e 529 (1300)
T KOG1513|consen 475 -------AFPEFEEFIHAVEKRGVGAMEIVAMDMKLRGMYIARQLSFKGVSFRIEEVPLSKE 529 (1300)
T ss_pred -------cCccHHHHHHHHHhcCCceeeeeehhhhhhhhhhhhhccccCceEEEEecccCHH
Confidence 0112333344433321112336666777777777777776666655444444443
|
|
| >COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=83.76 E-value=9 Score=42.69 Aligned_cols=77 Identities=14% Similarity=0.123 Sum_probs=42.5
Q ss_pred HHHHHHHHHH-cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCC--CCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCc
Q 001261 493 IQAQALPVIM-SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPV--AAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGV 569 (1112)
Q Consensus 493 iQ~~ai~~il-~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~--~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i 569 (1112)
+|-+.|+-++ .|..+|+.|+.|.|||+..+...+.....+.-+ ...+..++|||.--- --..+...++.++..+++
T Consensus 77 ~~P~lId~~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl-~re~~L~Rl~~v~a~mgL 155 (402)
T COG3598 77 NSPQLIDEFFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLEL-YREDILERLEPVRARMGL 155 (402)
T ss_pred cChhhhhHHhhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEecc-ChHHHHHHHHHHHHHcCC
Confidence 4455565544 566778889999999987655444332221111 111233566665211 113445667777777766
Q ss_pred e
Q 001261 570 R 570 (1112)
Q Consensus 570 ~ 570 (1112)
.
T Consensus 156 s 156 (402)
T COG3598 156 S 156 (402)
T ss_pred C
Confidence 4
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=83.60 E-value=4.8 Score=41.55 Aligned_cols=42 Identities=19% Similarity=0.306 Sum_probs=29.8
Q ss_pred cCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEecc
Q 001261 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSAT 657 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT 657 (1112)
+.+-.++|+||.-.-+|......+..++..+... .+|+++..
T Consensus 114 ~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~-~tii~~sh 155 (178)
T cd03247 114 LQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKD-KTLIWITH 155 (178)
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCC-CEEEEEec
Confidence 4567899999999888877677777777766543 35555444
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional | Back alignment and domain information |
|---|
Probab=83.58 E-value=2.2 Score=50.24 Aligned_cols=20 Identities=35% Similarity=0.401 Sum_probs=16.2
Q ss_pred cCCCEEEEcCCCChHHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~l 522 (1112)
...++|+.||||+|||+.+-
T Consensus 107 ~~~~iLl~Gp~GtGKT~lAr 126 (412)
T PRK05342 107 QKSNILLIGPTGSGKTLLAQ 126 (412)
T ss_pred CCceEEEEcCCCCCHHHHHH
Confidence 34679999999999997543
|
|
| >PRK09354 recA recombinase A; Provisional | Back alignment and domain information |
|---|
Probab=83.54 E-value=3.1 Score=47.69 Aligned_cols=42 Identities=19% Similarity=0.144 Sum_probs=28.3
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa 553 (1112)
|+-+.|.|++|||||+..+..+.... . .|..|++|..-..+-
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~-~-------~G~~~~yId~E~s~~ 101 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQ-K-------AGGTAAFIDAEHALD 101 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-H-------cCCcEEEECCccchH
Confidence 56788899999999976555444432 2 256778887655444
|
|
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=83.52 E-value=18 Score=41.39 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=14.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHh
Q 001261 507 CIGVAKTGSGKTLAFVLPMLRHIK 530 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~ 530 (1112)
+-++|+.|+|||+ ++-.++..+.
T Consensus 59 igi~G~~GaGKST-l~~~l~~~l~ 81 (332)
T PRK09435 59 IGITGVPGVGKST-FIEALGMHLI 81 (332)
T ss_pred EEEECCCCCCHHH-HHHHHHHHHH
Confidence 5556999999996 3444444433
|
|
| >PRK06647 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=83.47 E-value=4 Score=50.23 Aligned_cols=19 Identities=26% Similarity=0.078 Sum_probs=15.2
Q ss_pred CEEEEcCCCChHHHHHHHH
Q 001261 506 DCIGVAKTGSGKTLAFVLP 524 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp 524 (1112)
-+|+.||.|+|||.++.+.
T Consensus 40 ayLf~Gp~G~GKTt~Ar~l 58 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARAF 58 (563)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999865543
|
|
| >cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH) | Back alignment and domain information |
|---|
Probab=83.47 E-value=2.3 Score=35.53 Aligned_cols=43 Identities=23% Similarity=0.357 Sum_probs=35.7
Q ss_pred ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHH
Q 001261 1031 THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELK 1087 (1112)
Q Consensus 1031 t~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~ 1087 (1112)
..+.++.+|++.|||.|.+ +. .| .+.|.|++...|+.|+..|.
T Consensus 19 kgG~~ik~I~~~tg~~I~i-----~~-----~g----~v~I~G~~~~~v~~A~~~I~ 61 (61)
T cd02393 19 PGGKTIKKIIEETGVKIDI-----ED-----DG----TVYIAASDKEAAEKAKKMIE 61 (61)
T ss_pred CCchHHHHHHHHHCCEEEe-----CC-----CC----EEEEEeCCHHHHHHHHHHhC
Confidence 4689999999999999975 22 12 49999999999999999873
|
PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA in prokaryotes and plant chloroplasts. The C-terminal region of PNPase contains domains homologous to those in other RNA binding proteins: a KH domain and an S1 domain. KH domains bind single-stranded RNA and are found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. |
| >COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.39 E-value=0.83 Score=50.35 Aligned_cols=20 Identities=40% Similarity=0.506 Sum_probs=16.4
Q ss_pred HcCCCEEEEcCCCChHHHHH
Q 001261 502 MSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 502 l~g~dvii~a~TGsGKT~~~ 521 (1112)
++..++|++||||||||+.+
T Consensus 95 L~KSNILLiGPTGsGKTlLA 114 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLA 114 (408)
T ss_pred eeeccEEEECCCCCcHHHHH
Confidence 45568999999999999743
|
|
| >COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] | Back alignment and domain information |
|---|
Probab=83.29 E-value=16 Score=37.95 Aligned_cols=52 Identities=13% Similarity=0.187 Sum_probs=33.1
Q ss_pred eEEEeccchhhhccCC-hhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhc
Q 001261 619 TYLVMDEADRMFDMGF-EPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVL 670 (1112)
Q Consensus 619 ~~vViDEah~~~~~gf-~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~ 670 (1112)
++|||-=.|.....++ ...+..-...++|+.+++++|+.-...+..++.+..
T Consensus 145 DllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~ 197 (202)
T COG0378 145 DLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIE 197 (202)
T ss_pred eEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHH
Confidence 3444444443333343 234445567789999999999998777777765543
|
|
| >KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=83.26 E-value=2.7 Score=44.41 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=15.9
Q ss_pred CCEEEEcCCCChHHHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~ll 523 (1112)
.++|+.||+|+|||++.+.
T Consensus 49 P~liisGpPG~GKTTsi~~ 67 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILC 67 (333)
T ss_pred CceEeeCCCCCchhhHHHH
Confidence 4799999999999987543
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=83.24 E-value=1.9 Score=45.03 Aligned_cols=31 Identities=32% Similarity=0.337 Sum_probs=24.1
Q ss_pred ChHHHHHHHHHHH-cCCCEEEEcCCCChHHHH
Q 001261 490 PMPIQAQALPVIM-SGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 490 pt~iQ~~ai~~il-~g~dvii~a~TGsGKT~~ 520 (1112)
.++-|...+...+ .|..++++|+||||||+.
T Consensus 10 ~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 10 FSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 4566777776655 577889999999999974
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins | Back alignment and domain information |
|---|
Probab=83.13 E-value=3.7 Score=45.37 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHhcCCCeeeecCCCC
Q 001261 723 SQEKCDALFRDLLKHGYPCLSLHGAKD 749 (1112)
Q Consensus 723 s~~~~~~l~~~L~~~g~~~~~ihg~~~ 749 (1112)
|+..++.|+..|...++.+...|-++.
T Consensus 256 SV~iae~La~~L~~~~~~v~v~HRdl~ 282 (284)
T PF03668_consen 256 SVAIAERLAERLREKGYTVVVRHRDLE 282 (284)
T ss_pred HHHHHHHHHHHHHhcCCcceEEcCCCC
Confidence 578899999999999999998997764
|
This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding |
| >TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily | Back alignment and domain information |
|---|
Probab=83.08 E-value=5.2 Score=47.65 Aligned_cols=38 Identities=21% Similarity=0.227 Sum_probs=23.0
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~ 547 (1112)
.|.-+|+.|.+|+|||.. ++-+..++.. ..+..|+|++
T Consensus 193 ~g~liviag~pg~GKT~~-al~ia~~~a~------~~g~~v~~fS 230 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTL-ALNIAENVAL------REGKPVLFFS 230 (421)
T ss_pred CCceEEEEeCCCCCHHHH-HHHHHHHHHH------hCCCcEEEEE
Confidence 345577789999999964 4444434321 1244566766
|
Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model. |
| >COG1485 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.07 E-value=5.5 Score=45.07 Aligned_cols=109 Identities=17% Similarity=0.204 Sum_probs=62.6
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI 584 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~ 584 (1112)
+.+.+.|+.|.|||. |+-++.+.... .. -.-++.-.-...+++.+..+- |.
T Consensus 66 ~GlYl~GgVGrGKT~--LMD~Fy~~lp~------~~---k~R~HFh~FM~~vH~~l~~l~------------g~------ 116 (367)
T COG1485 66 RGLYLWGGVGRGKTM--LMDLFYESLPG------ER---KRRLHFHRFMARVHQRLHTLQ------------GQ------ 116 (367)
T ss_pred ceEEEECCCCccHHH--HHHHHHhhCCc------cc---cccccHHHHHHHHHHHHHHHc------------CC------
Confidence 678899999999995 55555443221 00 123566666666666666642 11
Q ss_pred HHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhc-CCCCcEEEEeccccHHH
Q 001261 585 SELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI-RPDRQTVLFSATFPRQV 662 (1112)
Q Consensus 585 ~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~-~~~~q~il~SAT~~~~~ 662 (1112)
.+.+ ..+.+- .+.+..+|++||.|- .|.+-...+..++..+ .....+|.+|-|.|.++
T Consensus 117 ------~dpl----~~iA~~---------~~~~~~vLCfDEF~V-tDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~L 175 (367)
T COG1485 117 ------TDPL----PPIADE---------LAAETRVLCFDEFEV-TDIADAMILGRLLEALFARGVVLVATSNTAPDNL 175 (367)
T ss_pred ------CCcc----HHHHHH---------HHhcCCEEEeeeeee-cChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHh
Confidence 1100 001111 234578999999983 3333333445555443 45778888999988764
|
|
| >TIGR00665 DnaB replicative DNA helicase | Back alignment and domain information |
|---|
Probab=83.04 E-value=5.7 Score=47.49 Aligned_cols=161 Identities=12% Similarity=0.060 Sum_probs=0.0
Q ss_pred CCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001261 486 NYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 486 ~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
|+....+---..+.=+..|.-+|+.|.+|+|||...+-.+++.... ....++++..-.-..|+...+.....
T Consensus 177 gi~tG~~~LD~~~~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~--------~g~~vl~~SlEm~~~~i~~R~~~~~~ 248 (434)
T TIGR00665 177 GVPTGFTDLDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAAIK--------EGKPVAFFSLEMSAEQLAMRMLSSES 248 (434)
T ss_pred cccCCchhhHhhcCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHh--------CCCeEEEEeCcCCHHHHHHHHHHHhc
Q ss_pred hcCceEEEEeCCCChHHH------HHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCCh----
Q 001261 566 VMGVRCVPVYGGSGVAQQ------ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFE---- 635 (1112)
Q Consensus 566 ~~~i~~~~~~gg~~~~~~------~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~---- 635 (1112)
.+.+.... .|.....+. +..+....-.|..+|+.=++.+...-.....-..+.+||||=.+.|...+..
T Consensus 249 ~v~~~~~~-~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~i~~~~~~~~r~ 327 (434)
T TIGR00665 249 RVDSQKLR-TGKLSDEDWEKLTSAAGKLSEAPLYIDDTPGLTITELRAKARRLKREHGLGLIVIDYLQLMSGSGRSENRQ 327 (434)
T ss_pred CCCHHHhc-cCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhcCCCCCCCCHH
Q ss_pred hHHHHHHHhcC-----CCCcEEEEe
Q 001261 636 PQITRIVQNIR-----PDRQTVLFS 655 (1112)
Q Consensus 636 ~~i~~il~~~~-----~~~q~il~S 655 (1112)
..+..|...++ .+..+|++|
T Consensus 328 ~~i~~i~~~Lk~lA~e~~i~vi~ls 352 (434)
T TIGR00665 328 QEVSEISRSLKALAKELNVPVIALS 352 (434)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEe
|
This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. |
| >PRK06305 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=82.97 E-value=7.6 Score=46.56 Aligned_cols=116 Identities=10% Similarity=0.086 Sum_probs=0.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCCh-HHHHH
Q 001261 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGV-AQQIS 585 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~-~~~~~ 585 (1112)
+|+.|+.|+|||.++.+.+-..+...+.........|. .|..+.......+..+.|.... .+++.
T Consensus 42 ~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~--------------~C~~i~~~~~~d~~~i~g~~~~gid~ir 107 (451)
T PRK06305 42 YLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCA--------------SCKEISSGTSLDVLEIDGASHRGIEDIR 107 (451)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccH--------------HHHHHhcCCCCceEEeeccccCCHHHHH
Q ss_pred HHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEe
Q 001261 586 ELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 586 ~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~S 655 (1112)
.+. ..+.+. .......+|||||+|.|.... ...+...+...++...+|+.+
T Consensus 108 ~i~-----------~~l~~~-------~~~~~~kvvIIdead~lt~~~-~n~LLk~lEep~~~~~~Il~t 158 (451)
T PRK06305 108 QIN-----------ETVLFT-------PSKSRYKIYIIDEVHMLTKEA-FNSLLKTLEEPPQHVKFFLAT 158 (451)
T ss_pred HHH-----------HHHHhh-------hhcCCCEEEEEecHHhhCHHH-HHHHHHHhhcCCCCceEEEEe
|
|
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=82.93 E-value=4.7 Score=48.29 Aligned_cols=119 Identities=13% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCCh
Q 001261 501 IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGV 580 (1112)
Q Consensus 501 il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~ 580 (1112)
+..|.-+++.|++|+|||+.++..+...... +..+|++..- +-..|+...+..+.-...
T Consensus 91 i~~GsvilI~G~pGsGKTTL~lq~a~~~a~~--------g~kvlYvs~E-Es~~qi~~ra~rlg~~~~------------ 149 (454)
T TIGR00416 91 IVPGSLILIGGDPGIGKSTLLLQVACQLAKN--------QMKVLYVSGE-ESLQQIKMRAIRLGLPEP------------ 149 (454)
T ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHHhc--------CCcEEEEECc-CCHHHHHHHHHHcCCChH------------
Q ss_pred HHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccC----------ChhHHHHHHHhcCCCCc
Q 001261 581 AQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG----------FEPQITRIVQNIRPDRQ 650 (1112)
Q Consensus 581 ~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~g----------f~~~i~~il~~~~~~~q 650 (1112)
.+.+.....+..++.. ..-..+++||||-...|.... +...+..+....+..--
T Consensus 150 -----------~l~~~~e~~~~~I~~~-----i~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~gi 213 (454)
T TIGR00416 150 -----------NLYVLSETNWEQICAN-----IEEENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGI 213 (454)
T ss_pred -----------HeEEcCCCCHHHHHHH-----HHhcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCC
Q ss_pred EEEEec
Q 001261 651 TVLFSA 656 (1112)
Q Consensus 651 ~il~SA 656 (1112)
++++++
T Consensus 214 Tvllt~ 219 (454)
T TIGR00416 214 AIFIVG 219 (454)
T ss_pred EEEEEe
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.78 E-value=3.5 Score=47.46 Aligned_cols=132 Identities=20% Similarity=0.274 Sum_probs=0.0
Q ss_pred HcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhc--------------
Q 001261 502 MSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM-------------- 567 (1112)
Q Consensus 502 l~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~-------------- 567 (1112)
+...++|+.||||||||+ +.--|..+.+ -|.+|.=|.|-.-|--+-+.+..+...+
T Consensus 224 LeKSNvLllGPtGsGKTl--laqTLAr~ld--------VPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqG 293 (564)
T KOG0745|consen 224 LEKSNVLLLGPTGSGKTL--LAQTLARVLD--------VPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQG 293 (564)
T ss_pred eecccEEEECCCCCchhH--HHHHHHHHhC--------CCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcC
Q ss_pred ---------------CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccch-hhhc
Q 001261 568 ---------------GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD-RMFD 631 (1112)
Q Consensus 568 ---------------~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah-~~~~ 631 (1112)
++...--++|....+-+-.|..|+-|-| .........+=+.|.||=-+ .+.-
T Consensus 294 IVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnV------------peK~~~~~~rgd~vqiDTtnILFia 361 (564)
T KOG0745|consen 294 IVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNV------------PEKGSRRKPRGDTVQIDTTNILFIA 361 (564)
T ss_pred eEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcc------------cCCCCCCCCCCCeEEEeccceEEEe
Q ss_pred cCChhHHHHHHHhcCCCCcEEEEec
Q 001261 632 MGFEPQITRIVQNIRPDRQTVLFSA 656 (1112)
Q Consensus 632 ~gf~~~i~~il~~~~~~~q~il~SA 656 (1112)
+|-...+.+++.....+ +-|+|++
T Consensus 362 sGAF~~Ldk~I~rR~~d-~slGFg~ 385 (564)
T KOG0745|consen 362 SGAFVGLDKIISRRLDD-KSLGFGA 385 (564)
T ss_pred cccccchHHHHHHhhcc-hhcccCC
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=82.61 E-value=1.9 Score=51.37 Aligned_cols=132 Identities=21% Similarity=0.311 Sum_probs=0.0
Q ss_pred HHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCC-------CCcEEEEccch------hHHHHH-----------
Q 001261 501 IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGD-------GPVGLIMAPTR------ELVQQI----------- 556 (1112)
Q Consensus 501 il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~-------~~~~LIl~Ptr------eLa~Q~----------- 556 (1112)
+.+|+++||+||+|+|||- +++.+-.-.+...|. +|+-|+-+|-| .|-.|+
T Consensus 458 V~~g~~LLItG~sG~GKtS-----LlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~ 532 (659)
T KOG0060|consen 458 VPSGQNLLITGPSGCGKTS-----LLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDS 532 (659)
T ss_pred ecCCCeEEEECCCCCchhH-----HHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhheeeccCccccccc
Q ss_pred ----HHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhcc
Q 001261 557 ----HSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDM 632 (1112)
Q Consensus 557 ----~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~ 632 (1112)
-..+..++...++....-.-|.-..+....+.. |-+||-...+-... ..+..-.+.|+||+-.-++.
T Consensus 533 ~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~d-----vLS~GEqQRLa~AR----Lfy~kPk~AiLDE~TSAv~~ 603 (659)
T KOG0060|consen 533 KSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMD-----VLSPGEQQRLAFAR----LFYHKPKFAILDECTSAVTE 603 (659)
T ss_pred cCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHh-----hcCHHHHHHHHHHH----HHhcCCceEEeechhhhccH
Q ss_pred CChhHHHHHHHhcC
Q 001261 633 GFEPQITRIVQNIR 646 (1112)
Q Consensus 633 gf~~~i~~il~~~~ 646 (1112)
+.+..+-+++....
T Consensus 604 dvE~~~Yr~~r~~g 617 (659)
T KOG0060|consen 604 DVEGALYRKCREMG 617 (659)
T ss_pred HHHHHHHHHHHHcC
|
|
| >PF14516 AAA_35: AAA-like domain | Back alignment and domain information |
|---|
Probab=82.58 E-value=10 Score=43.62 Aligned_cols=147 Identities=16% Similarity=0.217 Sum_probs=0.0
Q ss_pred CCCChHHHHHHHHHHHc-CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc-------cchhHHHHHHH
Q 001261 487 YEKPMPIQAQALPVIMS-GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA-------PTRELVQQIHS 558 (1112)
Q Consensus 487 ~~~pt~iQ~~ai~~il~-g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~-------PtreLa~Q~~~ 558 (1112)
|..-.|+..+++..|.. |.-+.|.||=.+||| +.+..++.++..+ |..+++|- ....+-.-+..
T Consensus 13 Yi~R~~~e~~~~~~i~~~G~~~~I~apRq~GKT-Sll~~l~~~l~~~-------~~~~v~id~~~~~~~~~~~~~~f~~~ 84 (331)
T PF14516_consen 13 YIERPPAEQECYQEIVQPGSYIRIKAPRQMGKT-SLLLRLLERLQQQ-------GYRCVYIDLQQLGSAIFSDLEQFLRW 84 (331)
T ss_pred ccCchHHHHHHHHHHhcCCCEEEEECcccCCHH-HHHHHHHHHHHHC-------CCEEEEEEeecCCCcccCCHHHHHHH
Q ss_pred HHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhc-cCChhH
Q 001261 559 DIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQ 637 (1112)
Q Consensus 559 ~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~-~gf~~~ 637 (1112)
-+..++..+++. ..+..-.+-.++.+..+..++... -+.....-=+|+|||+|.+++ ..+...
T Consensus 85 ~~~~i~~~L~l~--------------~~l~~~w~~~~~~~~~~~~~~~~~--ll~~~~~~lVL~iDEiD~l~~~~~~~~d 148 (331)
T PF14516_consen 85 FCEEISRQLKLD--------------EKLDEYWDEEIGSKISCTEYFEEY--LLKQIDKPLVLFIDEIDRLFEYPQIADD 148 (331)
T ss_pred HHHHHHHHcCCC--------------hhHHHHHHHhcCChhhHHHHHHHH--HHhcCCCCEEEEEechhhhccCcchHHH
Q ss_pred HHHHHHhcCCCCc---------EEEEecc
Q 001261 638 ITRIVQNIRPDRQ---------TVLFSAT 657 (1112)
Q Consensus 638 i~~il~~~~~~~q---------~il~SAT 657 (1112)
+..++......+. +|++..|
T Consensus 149 F~~~LR~~~~~~~~~~~~~~L~li~~~~t 177 (331)
T PF14516_consen 149 FFGLLRSWYEQRKNNPIWQKLRLILAGST 177 (331)
T ss_pred HHHHHHHHHHhcccCcccceEEEEEecCc
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1112 | ||||
| 2i4i_A | 417 | Crystal Structure Of Human Dead-Box Rna Helicase Dd | 8e-82 | ||
| 2db3_A | 434 | Structural Basis For Rna Unwinding By The Dead-Box | 5e-75 | ||
| 4a4d_A | 253 | Crystal Structure Of The N-Terminal Domain Of The H | 2e-67 | ||
| 3fe2_A | 242 | Human Dead-Box Rna Helicase Ddx5 (P68), Conserved D | 1e-62 | ||
| 2j0q_A | 410 | The Crystal Structure Of The Exon Junction Complex | 6e-56 | ||
| 2hyi_C | 413 | Structure Of The Human Exon Junction Complex With A | 7e-56 | ||
| 2xb2_A | 411 | Crystal Structure Of The Core Mago-Y14-Eif4aiii-Bar | 8e-56 | ||
| 2hxy_A | 391 | Crystal Structure Of Human Apo-Eif4aiii Length = 39 | 1e-55 | ||
| 2j0u_A | 374 | The Crystal Structure Of Eif4aiii-Barentsz Complex | 4e-55 | ||
| 1s2m_A | 400 | Crystal Structure Of The Dead Box Protein Dhh1p Len | 4e-54 | ||
| 2j0u_B | 374 | The Crystal Structure Of Eif4aiii-Barentsz Complex | 4e-54 | ||
| 1hv8_A | 367 | Crystal Structure Of A Dead Box Protein From The Hy | 1e-50 | ||
| 2z0m_A | 337 | Crystal Structure Of Hypothetical Atp-Dependent Rna | 2e-48 | ||
| 1xtk_A | 390 | Structure Of Decd To Dead Mutation Of Human Uap56 L | 5e-47 | ||
| 1xtj_A | 386 | Structure Of Human Uap56 In Complex With Adp Length | 2e-46 | ||
| 1xti_A | 391 | Structure Of Wildtype Human Uap56 Length = 391 | 2e-46 | ||
| 3eiq_A | 414 | Crystal Structure Of Pdcd4-eif4a Length = 414 | 2e-46 | ||
| 2zu6_A | 388 | Crystal Structure Of The Eif4a-Pdcd4 Complex Length | 7e-46 | ||
| 3pey_A | 395 | S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3 Length | 2e-45 | ||
| 3pew_A | 395 | S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3 | 3e-45 | ||
| 3iuy_A | 228 | Crystal Structure Of Ddx53 Dead-Box Domain Length = | 1e-40 | ||
| 1wrb_A | 253 | Crystal Structure Of The N-Terminal Reca-Like Domai | 2e-39 | ||
| 2vso_A | 395 | Crystal Structure Of A Translation Initiation Compl | 2e-39 | ||
| 3sqw_A | 579 | Structure Of Mss116p (Nte Deletion) Bound To Ssrna | 2e-38 | ||
| 3i5x_A | 563 | Structure Of Mss116p Bound To Ssrna And Amp-Pnp Len | 6e-38 | ||
| 3sqx_A | 512 | Structure Of Mss116p (Nte And C-Tail Double Deletio | 1e-37 | ||
| 3fho_B | 508 | Structure Of S. Pombe Dbp5 Length = 508 | 3e-37 | ||
| 3ber_A | 249 | Human Dead-Box Rna-Helicase Ddx47, Conserved Domain | 3e-37 | ||
| 1fuu_A | 394 | Yeast Initiation Factor 4a Length = 394 | 8e-37 | ||
| 2gxq_A | 207 | Hera N-Terminal Domain In Complex With Amp, Crystal | 1e-36 | ||
| 3mwj_A | 207 | Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Ap | 3e-36 | ||
| 3fmp_B | 479 | Crystal Structure Of The Nucleoporin Nup214 In Comp | 4e-36 | ||
| 3ews_A | 445 | Human Dead-Box Rna-Helicase Ddx19 In Complex With A | 7e-36 | ||
| 3fht_A | 412 | Crystal Structure Of Human Dbp5 In Complex With Amp | 8e-36 | ||
| 3g0h_A | 424 | Human Dead-box Rna Helicase Ddx19, In Complex With | 8e-36 | ||
| 3dkp_A | 245 | Human Dead-Box Rna-Helicase Ddx52, Conserved Domain | 2e-30 | ||
| 2jgn_A | 185 | Ddx3 Helicase Domain Length = 185 | 5e-29 | ||
| 2pl3_A | 236 | Human Dead-Box Rna Helicase Ddx10, Dead Domain In C | 3e-27 | ||
| 3ly5_A | 262 | Ddx18 Dead-Domain Length = 262 | 1e-25 | ||
| 1vec_A | 206 | Crystal Structure Of The N-Terminal Domain Of RckP5 | 3e-25 | ||
| 3bor_A | 237 | Crystal Structure Of The Deadc Domain Of Human Tran | 1e-24 | ||
| 2g9n_A | 221 | Structure Of The Dead Domain Of Human Eukaryotic In | 4e-23 | ||
| 2hjv_A | 163 | Structure Of The Second Domain (Residues 207-368) O | 7e-22 | ||
| 2p6n_A | 191 | Human Dead-box Rna Helicase Ddx41, Helicase Domain | 2e-21 | ||
| 1t6n_A | 220 | Crystal Structure Of The N-Terminal Domain Of Human | 5e-21 | ||
| 1t5i_A | 172 | Crystal Structure Of The C-Terminal Domain Of Uap56 | 1e-20 | ||
| 1qde_A | 224 | Crystal Structure Of The Atpase Domain Of Translati | 1e-20 | ||
| 1qva_A | 223 | Yeast Initiation Factor 4a N-Terminal Domain Length | 1e-20 | ||
| 2kbe_A | 226 | Solution Structure Of Amino-Terminal Domain Of Dbp5 | 7e-20 | ||
| 1q0u_A | 219 | Crystal Structure Of The Bstdead N-Terminal Domain | 8e-20 | ||
| 2kbf_A | 187 | Solution Structure Of Carboxyl-Terminal Domain Of D | 4e-19 | ||
| 3gfp_A | 189 | Structure Of The C-Terminal Domain Of The Dead-Box | 1e-18 | ||
| 3peu_A | 188 | S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To | 2e-18 | ||
| 2wax_A | 193 | Structure Of The Human Ddx6 C-Terminal Domain In Co | 5e-18 | ||
| 2oxc_A | 230 | Human Dead-Box Rna Helicase Ddx20, Dead Domain In C | 2e-17 | ||
| 3fmo_B | 300 | Crystal Structure Of The Nucleoporin Nup214 In Comp | 3e-16 | ||
| 3fhc_B | 235 | Crystal Structure Of Human Dbp5 In Complex With Nup | 7e-16 | ||
| 2yjt_D | 170 | Crystal Structure Of E. Coli Dead-Box Protein Srmb | 2e-15 | ||
| 2rb4_A | 175 | Crystal Structure Of The Helicase Domain Of Human D | 2e-14 | ||
| 4db4_A | 256 | Mss116p Dead-Box Helicase Domain 2 Bound To A Chima | 4e-13 | ||
| 4db2_C | 257 | Mss116p Dead-Box Helicase Domain 2 Bound To An Rna | 4e-13 | ||
| 4db2_A | 257 | Mss116p Dead-Box Helicase Domain 2 Bound To An Rna | 4e-13 | ||
| 3i32_A | 300 | Dimeric Structure Of A Hera Helicase Fragment Inclu | 6e-12 | ||
| 1fuk_A | 165 | Crystal Structure Of The Carboxy Terminal Domain Of | 9e-12 | ||
| 3eaq_A | 212 | Novel Dimerization Motif In The Dead Box Rna Helica | 3e-11 | ||
| 4f91_B | 1724 | Brr2 Helicase Region Length = 1724 | 8e-10 | ||
| 4f92_B | 1724 | Brr2 Helicase Region S1087l Length = 1724 | 8e-10 | ||
| 2v1x_A | 591 | Crystal Structure Of Human Recq-Like Dna Helicase L | 5e-09 | ||
| 1oyy_A | 523 | Structure Of The Recq Catalytic Core Bound To Atp-G | 3e-08 | ||
| 1wp9_A | 494 | Crystal Structure Of Pyrococcus Furiosus Hef Helica | 1e-05 | ||
| 1oyw_A | 523 | Structure Of The Recq Catalytic Core Length = 523 | 4e-04 | ||
| 3tmi_A | 695 | Structural Basis For Rna Recognition And Activation | 4e-04 | ||
| 2ykg_A | 696 | Structural Insights Into Rna Recognition By Rig-I L | 4e-04 | ||
| 4ay2_A | 687 | Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I | 5e-04 |
| >pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x Length = 417 | Back alignment and structure |
|
| >pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein Drosophila Vasa Length = 434 | Back alignment and structure |
|
| >pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human Dead-Box Rna Helicase Ddx5 (P68) Length = 253 | Back alignment and structure |
|
| >pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I In Complex With Adp Length = 242 | Back alignment and structure |
|
| >pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2 A Resolution Length = 410 | Back alignment and structure |
|
| >pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A Trapped Dead-Box Helicase Bound To Rna Length = 413 | Back alignment and structure |
|
| >pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz- Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd Machinery Length = 411 | Back alignment and structure |
|
| >pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii Length = 391 | Back alignment and structure |
|
| >pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 | Back alignment and structure |
|
| >pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p Length = 400 | Back alignment and structure |
|
| >pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 | Back alignment and structure |
|
| >pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The Hyperthermophile Methanococcus Jannaschii Length = 367 | Back alignment and structure |
|
| >pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna Helicase From Sulfolobus Tokodaii Length = 337 | Back alignment and structure |
|
| >pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56 Length = 390 | Back alignment and structure |
|
| >pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp Length = 386 | Back alignment and structure |
|
| >pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56 Length = 391 | Back alignment and structure |
|
| >pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a Length = 414 | Back alignment and structure |
|
| >pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex Length = 388 | Back alignment and structure |
|
| >pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3 Length = 395 | Back alignment and structure |
|
| >pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3 Length = 395 | Back alignment and structure |
|
| >pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain Length = 228 | Back alignment and structure |
|
| >pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of Djvlgb, A Pranarian Vasa-Like Rna Helicase Length = 253 | Back alignment and structure |
|
| >pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex Length = 395 | Back alignment and structure |
|
| >pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And Amp-Pnp Length = 579 | Back alignment and structure |
|
| >pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp Length = 563 | Back alignment and structure |
|
| >pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion) Bound To Ssrna And Amp-Pnp Length = 512 | Back alignment and structure |
|
| >pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In Complex With Amp Length = 249 | Back alignment and structure |
|
| >pdb|1FUU|A Chain A, Yeast Initiation Factor 4a Length = 394 | Back alignment and structure |
|
| >pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1 Length = 207 | Back alignment and structure |
|
| >pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form Length = 207 | Back alignment and structure |
|
| >pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex With The Dead- Box Helicase Ddx19 Length = 479 | Back alignment and structure |
|
| >pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp Length = 445 | Back alignment and structure |
|
| >pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And Rna Length = 412 | Back alignment and structure |
|
| >pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An Atp-analogue And Rna Length = 424 | Back alignment and structure |
|
| >pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In Complex With Adp Length = 245 | Back alignment and structure |
|
| >pdb|2JGN|A Chain A, Ddx3 Helicase Domain Length = 185 | Back alignment and structure |
|
| >pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex With Adp Length = 236 | Back alignment and structure |
|
| >pdb|3LY5|A Chain A, Ddx18 Dead-Domain Length = 262 | Back alignment and structure |
|
| >pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A Human Dead-Box Protein Length = 206 | Back alignment and structure |
|
| >pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation Initiation Factor 4a-2 Length = 237 | Back alignment and structure |
|
| >pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic Initiation Factor 4a, Eif4a Length = 221 | Back alignment and structure |
|
| >pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The Bacillus Subtilis Yxin Protein Length = 163 | Back alignment and structure |
|
| >pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain Length = 191 | Back alignment and structure |
|
| >pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56 Length = 220 | Back alignment and structure |
|
| >pdb|1T5I|A Chain A, Crystal Structure Of The C-Terminal Domain Of Uap56 Length = 172 | Back alignment and structure |
|
| >pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation Initiation Factor 4a From Saccharomyces Cerevisiae-The Prototype Of The Dead Box Protein Family Length = 224 | Back alignment and structure |
|
| >pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain Length = 223 | Back alignment and structure |
|
| >pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p Length = 226 | Back alignment and structure |
|
| >pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain Length = 219 | Back alignment and structure |
|
| >pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p Length = 187 | Back alignment and structure |
|
| >pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein Dbp5 Length = 189 | Back alignment and structure |
|
| >pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1 H337r And Ip6 Length = 188 | Back alignment and structure |
|
| >pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex With An Edc3-Fdf Peptide Length = 193 | Back alignment and structure |
|
| >pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex With Adp Length = 230 | Back alignment and structure |
|
| >pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex With The Dead- Box Helicase Ddx19 Length = 300 | Back alignment and structure |
|
| >pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214 Length = 235 | Back alignment and structure |
|
| >pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound To Regulator Of Ribonuclease Activity A (Rraa) Length = 170 | Back alignment and structure |
|
| >pdb|2RB4|A Chain A, Crystal Structure Of The Helicase Domain Of Human Ddx25 Rna Helicase Length = 175 | Back alignment and structure |
|
| >pdb|4DB4|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric Rna-Dna Duplex Length = 256 | Back alignment and structure |
|
| >pdb|4DB2|C Chain C, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex Length = 257 | Back alignment and structure |
|
| >pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex Length = 257 | Back alignment and structure |
|
| >pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including The C-Terminal Reca Domain, The Dimerization Domain, And The Rna Binding Domain Length = 300 | Back alignment and structure |
|
| >pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast Eif4a Length = 165 | Back alignment and structure |
|
| >pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera Form 2, Complete Dimer, Symmetric Length = 212 | Back alignment and structure |
|
| >pdb|4F91|B Chain B, Brr2 Helicase Region Length = 1724 | Back alignment and structure |
|
| >pdb|4F92|B Chain B, Brr2 Helicase Region S1087l Length = 1724 | Back alignment and structure |
|
| >pdb|2V1X|A Chain A, Crystal Structure Of Human Recq-Like Dna Helicase Length = 591 | Back alignment and structure |
|
| >pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S Length = 523 | Back alignment and structure |
|
| >pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase Domain Length = 494 | Back alignment and structure |
|
| >pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core Length = 523 | Back alignment and structure |
|
| >pdb|3TMI|A Chain A, Structural Basis For Rna Recognition And Activation Of Rig-I Length = 695 | Back alignment and structure |
|
| >pdb|2YKG|A Chain A, Structural Insights Into Rna Recognition By Rig-I Length = 696 | Back alignment and structure |
|
| >pdb|4AY2|A Chain A, Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I Length = 687 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Length = 434 | Back alignment and structure |
|---|
Score = 647 bits (1672), Expect = 0.0
Identities = 159/431 (36%), Positives = 241/431 (55%), Gaps = 16/431 (3%)
Query: 426 PFRKNFYIEVKEIARMTPEEVSAYRK--------QLELKIHGKDVPKPIKTWHQTGLTSK 477
F FYI + S + +K+ G DVP+PI+ + L
Sbjct: 7 EFPGEFYIPPEPSNDAIEIFSSGIASGIHFSKYNNIPVKVTGSDVPQPIQHFTSADLRDI 66
Query: 478 IMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAA 537
I++ + K Y+ P PIQ ++PVI SGRD + A+TGSGKT AF+LP+L + + P
Sbjct: 67 IIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELE 126
Query: 538 GDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCT 597
P +I++PTREL QI ++ RKFA ++ VYGG+ Q + RG +V+ T
Sbjct: 127 LGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIAT 186
Query: 598 PGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI--RPDRQTVLFS 655
PGR++D + ++V+DEADRM DMGF + RI+ ++ RP+ QT++FS
Sbjct: 187 PGRLLDFV---DRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFS 243
Query: 656 ATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKG 715
ATFP +++ +A + L V + +G D+ Q + + + +L+E+L E +
Sbjct: 244 ATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSE--QAD 301
Query: 716 KILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA 775
++FV ++ D L L + +P S+HG + Q+ RE + DFK+ +LIATSVA+
Sbjct: 302 GTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVAS 361
Query: 776 RGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFIS-EEDAKYSPDLVKALE 834
RGLD+K ++ VIN+D P+ +DYVHR+GRTGR G G A +F E+D + DLVK LE
Sbjct: 362 RGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILE 421
Query: 835 LSEQVVPDDLK 845
S Q VPD L+
Sbjct: 422 GSGQTVPDFLR 432
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Length = 417 | Back alignment and structure |
|---|
Score = 632 bits (1633), Expect = 0.0
Identities = 165/414 (39%), Positives = 243/414 (58%), Gaps = 20/414 (4%)
Query: 454 ELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKT 513
++ G + P I+++ + IM I Y +P P+Q A+P+I RD + A+T
Sbjct: 2 MVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQT 61
Query: 514 GSGKTLAFVLPMLRHIKDQPPVAA-------------GDGPVGLIMAPTRELVQQIHSDI 560
GSGKT AF+LP+L I P A P+ L++APTREL QI+ +
Sbjct: 62 GSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEA 121
Query: 561 RKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTY 620
RKF+ VR VYGG+ + QQI +L+RG ++V TPGR++D++ L Y
Sbjct: 122 RKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMM---ERGKIGLDFCKY 178
Query: 621 LVMDEADRMFDMGFEPQITRIVQ--NIRPD--RQTVLFSATFPRQVEILARKVLNKPVEI 676
LV+DEADRM DMGFEPQI RIV+ + P R T++FSATFP+++++LAR L++ + +
Sbjct: 179 LVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFL 238
Query: 677 QVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLK 736
VG +++ITQ V ESD+ LL+LL + L+FV +++ D+L L
Sbjct: 239 AVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYH 298
Query: 737 HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYE 796
GY C S+HG + Q DRE + F+S +L+AT+VAARGLD+ ++ VINFD P+ E
Sbjct: 299 EGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIE 358
Query: 797 DYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADS 850
+YVHR+GRTGR G G A +F +E + + DL+ L ++Q VP L+ +A
Sbjct: 359 EYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAYE 412
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} Length = 242 | Back alignment and structure |
|---|
Score = 441 bits (1138), Expect = e-148
Identities = 111/245 (45%), Positives = 161/245 (65%), Gaps = 3/245 (1%)
Query: 439 ARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQAL 498
+ T +EV YR+ E+ + G + PKP+ +++ + +M+ I + N+ +P IQAQ
Sbjct: 1 SMRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGW 60
Query: 499 PVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHS 558
PV +SG D +GVA+TGSGKTL+++LP + HI QP + GDGP+ L++APTREL QQ+
Sbjct: 61 PVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQ 120
Query: 559 DIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRV 618
++ + ++ +YGG+ QI +L+RG EI + TPGR+ID L TNLRR
Sbjct: 121 VAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEC---GKTNLRRT 177
Query: 619 TYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQV 678
TYLV+DEADRM DMGFEPQI +IV IRPDRQT+++SAT+P++V LA L + I +
Sbjct: 178 TYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINI 237
Query: 679 GGRSV 683
G +
Sbjct: 238 GALEL 242
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Length = 228 | Back alignment and structure |
|---|
Score = 393 bits (1012), Expect = e-130
Identities = 87/223 (39%), Positives = 137/223 (61%), Gaps = 6/223 (2%)
Query: 458 HGKDVPKPIKTWHQT-GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSG 516
+ +PKP + ++++I ++ KP PIQ+QA P+I+ G D I VA+TG+G
Sbjct: 10 EKRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTG 69
Query: 517 KTLAFVLPMLRHIKDQP-PVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVY 575
KTL++++P H+ QP +GP L++ PTREL + ++ K++ G++ + +Y
Sbjct: 70 KTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSY-KGLKSICIY 128
Query: 576 GGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFE 635
GG QI ++ +G +I++ TPGR+ D+ NLR +TYLV+DEAD+M DM FE
Sbjct: 129 GGRNRNGQIEDISKGVDIIIATPGRLNDLQ---MNNSVNLRSITYLVIDEADKMLDMEFE 185
Query: 636 PQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQV 678
PQI +I+ ++RPDRQTV+ SAT+P V LA L P+ + V
Sbjct: 186 PQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVYV 228
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Length = 410 | Back alignment and structure |
|---|
Score = 377 bits (971), Expect = e-121
Identities = 125/364 (34%), Positives = 194/364 (53%), Gaps = 10/364 (2%)
Query: 463 PKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFV 522
T+ GL ++ I +EKP IQ +A+ I+ GRD I +++G+GKT F
Sbjct: 33 VDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFS 92
Query: 523 LPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQ 582
+ +L+ + Q LI+APTREL QI + M V+C GG+ V +
Sbjct: 93 ISVLQCLDIQVR-----ETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGE 147
Query: 583 QISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIV 642
I +L G +V TPGR+ D++ + R + LV+DEAD M + GF+ QI +
Sbjct: 148 DIRKLDYGQHVVAGTPGRVFDMI---RRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVY 204
Query: 643 QNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQL-VEVRPESDRF 701
+ + P Q VL SAT P ++ + K + P+ I V + + I Q V V E +F
Sbjct: 205 RYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKF 264
Query: 702 LRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFK 761
L +L + + +IF +++ K D L + + + S+HG Q +RES + +F+
Sbjct: 265 DTLCDLY-DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 323
Query: 762 SNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEE 821
S +LI+T V ARGLDV ++ L+IN+D PN+ E Y+HR+GR+GR GRKG AI F+ +
Sbjct: 324 SGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKND 383
Query: 822 DAKY 825
D +
Sbjct: 384 DIRI 387
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Length = 394 | Back alignment and structure |
|---|
Score = 376 bits (967), Expect = e-120
Identities = 112/360 (31%), Positives = 185/360 (51%), Gaps = 11/360 (3%)
Query: 464 KPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVL 523
K + + L ++ + +E+P IQ +A+ I+ G D + A++G+GKT F +
Sbjct: 18 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSI 77
Query: 524 PMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ 583
L+ I P L++APTREL QI + A M ++ GG+ +
Sbjct: 78 AALQRIDTSVK-----APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVED 132
Query: 584 ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ 643
L+ +IVV TPGR+ D + + ++ ++DEAD M GF+ QI +I
Sbjct: 133 AEGLR-DAQIVVGTPGRVFDNI---QRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFT 188
Query: 644 NIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQL-VEVRPESDRFL 702
+ P Q VL SAT P V + K + PV I V + + I Q V V E ++
Sbjct: 189 LLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYE 248
Query: 703 RLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKS 762
L +L + + +IF +++ K + L L + +++ Q +R++ + +F+S
Sbjct: 249 CLTDLY-DSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRS 307
Query: 763 NVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEED 822
+LI+T + ARG+DV+++ LVIN+D P + E+Y+HR+GR GR GRKG AI F++ ED
Sbjct: 308 GSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNED 367
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Length = 245 | Back alignment and structure |
|---|
Score = 369 bits (951), Expect = e-120
Identities = 78/248 (31%), Positives = 135/248 (54%), Gaps = 14/248 (5%)
Query: 444 EEVSAYRKQLELKIHGKDVPKPIKTWHQT----GLTSKIMETIRKLNYEKPMPIQAQALP 499
+++ R + ++ + G D+P PI T+ Q + S++++ I ++ P PIQ QA+P
Sbjct: 2 MKINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIP 61
Query: 500 VIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSD 559
V++ GR+ + A TGSGKTLAF +P+L +K G LI++PTREL QIH +
Sbjct: 62 VMLHGRELLASAPTGSGKTLAFSIPILMQLKQPA----NKGFRALIISPTRELASQIHRE 117
Query: 560 IRKFAKVMGVRCVPVYGGSGVAQQIS-ELKRGTEIVVCTPGRMIDILCTSGGKITNLRRV 618
+ K ++ G R ++ + A++ + + +I+V TP R+I +L I +L V
Sbjct: 118 LIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGI-DLASV 176
Query: 619 TYLVMDEADRMFD---MGFEPQITRIVQNIRPD-RQTVLFSATFPRQVEILARKVLNKPV 674
+LV+DE+D++F+ GF Q+ I + +FSATF VE + L+ +
Sbjct: 177 EWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVI 236
Query: 675 EIQVGGRS 682
+ +G R+
Sbjct: 237 SVSIGARN 244
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Length = 400 | Back alignment and structure |
|---|
Score = 372 bits (957), Expect = e-119
Identities = 120/354 (33%), Positives = 182/354 (51%), Gaps = 12/354 (3%)
Query: 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQ 532
L +++ I + +EKP PIQ +A+PV ++GRD + AK G+GKT AFV+P L +K +
Sbjct: 27 YLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK 86
Query: 533 PPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTE 592
LIM PTREL Q +R K G+ C+ GG+ + I L
Sbjct: 87 LNK-----IQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVH 141
Query: 593 IVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTV 652
I+V TPGR++D+ K+ +L + +MDEAD+M F+ I +I+ + P Q++
Sbjct: 142 ILVGTPGRVLDLA---SRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSL 198
Query: 653 LFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQL-VEVRPESDRFLRLLELLGEW 711
LFSATFP V+ K L+KP EI + + K ITQ V E + L L
Sbjct: 199 LFSATFPLTVKEFMVKHLHKPYEINLM-EELTLKGITQYYAFVE-ERQKLHCLNTLF-SK 255
Query: 712 YEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT 771
+ + +IF +S + + L + + GY C H Q +R +F+ L+ +
Sbjct: 256 LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCS 315
Query: 772 SVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKY 825
+ RG+D++ + +VINFD P E Y+HR+GR+GR G G AI I+ D
Sbjct: 316 DLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFN 369
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Length = 414 | Back alignment and structure |
|---|
Score = 372 bits (957), Expect = e-119
Identities = 118/364 (32%), Positives = 193/364 (53%), Gaps = 11/364 (3%)
Query: 464 KPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVL 523
+ + ++ L+ ++ I +EKP IQ +A+ + G D I A++G+GKT F +
Sbjct: 37 EIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAI 96
Query: 524 PMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ 583
+L+ I+ L++APTREL QQI + MG C GG+ V +
Sbjct: 97 SILQQIELDLK-----ATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE 151
Query: 584 ISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIV 642
+ +L+ I+V TPGR+ D+L + + + + V+DEAD M GF+ QI I
Sbjct: 152 VQKLQMEAPHIIVGTPGRVFDML---NRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIF 208
Query: 643 QNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQL-VEVRPESDRF 701
Q + + Q VL SAT P V + +K + P+ I V + + I Q + V E +
Sbjct: 209 QKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKL 268
Query: 702 LRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFK 761
L +L E + +IF++++ K D L + + ++HG DQ +R+ + +F+
Sbjct: 269 DTLCDLY-ETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFR 327
Query: 762 SNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEE 821
S +LI T + ARG+DV+++ LVIN+D P + E+Y+HR+GR GR GRKG AI ++EE
Sbjct: 328 SGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEE 387
Query: 822 DAKY 825
D +
Sbjct: 388 DKRT 391
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Length = 253 | Back alignment and structure |
|---|
Score = 357 bits (918), Expect = e-115
Identities = 91/250 (36%), Positives = 141/250 (56%), Gaps = 13/250 (5%)
Query: 453 LELKIHGKD--VPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGV 510
+ + + G D I+ + + L I I +Y++P PIQ A+P I+ RD +
Sbjct: 7 IPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMAC 66
Query: 511 AKTGSGKTLAFVLPMLRHI----KDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKV 566
A+TGSGKT AF++P++ H+ +Q + P LI+APTREL QI S+ +KF+
Sbjct: 67 AQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLN 126
Query: 567 MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEA 626
+R VYGG+ QI E++ G ++V TPGR++D + +L Y+V+DEA
Sbjct: 127 TPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFI---EKNKISLEFCKYIVLDEA 183
Query: 627 DRMFDMGFEPQITRIVQNIRP----DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRS 682
DRM DMGFEPQI +I++ +RQT++FSATFP++++ LA L + + VG
Sbjct: 184 DRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVG 243
Query: 683 VVNKDITQLV 692
+ I Q +
Sbjct: 244 STSDSIKQEI 253
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Length = 367 | Back alignment and structure |
|---|
Score = 361 bits (929), Expect = e-115
Identities = 120/351 (34%), Positives = 188/351 (53%), Gaps = 23/351 (6%)
Query: 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGR-DCIGVAKTGSGKTLAFVLPMLRHIKD 531
L+ I+ IR +EKP IQ + +P+ ++ + + A+TGSGKT +F +P++ + +
Sbjct: 12 NLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE 71
Query: 532 QPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGT 591
+G +I+ PTREL Q+ +I ++ +YGG + QI LK
Sbjct: 72 N------NGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNA- 124
Query: 592 EIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQT 651
IVV TPGR++D + NL+ V Y ++DEAD M +MGF + +I+ D++
Sbjct: 125 NIVVGTPGRILDHI---NRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRI 181
Query: 652 VLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRF---LRLLELL 708
+LFSAT PR++ LA+K + I+ N +I Q E++RF RLL+
Sbjct: 182 LLFSATMPREILNLAKKYMGDYSFIKAKI----NANIEQSYVEVNENERFEALCRLLK-- 235
Query: 709 GEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLL 768
++ L+F ++ L L G+ ++HG Q+ RE I FK +L
Sbjct: 236 ---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRIL 292
Query: 769 IATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFIS 819
IAT V +RG+DV +L VIN+ P + E Y+HR+GRTGRAG+KG AI+ I+
Sbjct: 293 IATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIIN 343
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Length = 337 | Back alignment and structure |
|---|
Score = 358 bits (921), Expect = e-115
Identities = 113/350 (32%), Positives = 185/350 (52%), Gaps = 29/350 (8%)
Query: 474 LTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPML-RHIKDQ 532
+ KI + IR++ ++ +Q++ +P+++ G++ + AKTGSGKT A+ +P+L +K
Sbjct: 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILELGMK-- 58
Query: 533 PPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTE 592
L++ PTREL +Q+ S IR + M + VYGG QI+ + R +
Sbjct: 59 ----------SLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRV-RNAD 107
Query: 593 IVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTV 652
IVV TPGR++D+ + +L +++DEAD MF+MGF I I+ + T
Sbjct: 108 IVVATPGRLLDLW---SKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITG 164
Query: 653 LFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQ-LVEVRPESDRFLRLLELLGEW 711
LFSAT P ++ + + + EI+ + ++ V V+ + ++ L
Sbjct: 165 LFSATIPEEIRKVVKDFITNYEEIEA---CIGLANVEHKFVHVKDDWRSKVQALRE---- 217
Query: 712 YEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT 771
+ +++FV ++ + L++ + L G Q+ R I F+ ++LI T
Sbjct: 218 NKDKGVIVFVRTRNRVA----KLVRLFDNAIELRGDLPQSVRNRNIDAFREGEYDMLITT 273
Query: 772 SVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEE 821
VA+RGLD+ +E VINFDAP Y+HR+GRTGR GRKG AITFI E
Sbjct: 274 DVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFILNE 323
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Length = 412 | Back alignment and structure |
|---|
Score = 353 bits (907), Expect = e-112
Identities = 107/383 (27%), Positives = 188/383 (49%), Gaps = 25/383 (6%)
Query: 454 ELKIHGKDVPKP---IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG--RDCI 508
++++ +D P +K++ + L ++++ + + + +P IQ ALP++++ ++ I
Sbjct: 9 QVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLI 68
Query: 509 GVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM- 567
+++G+GKT AFVL ML ++ P L ++PT EL Q I + K
Sbjct: 69 AQSQSGTGKTAAFVLAMLSQVEPANK-----YPQCLCLSPTYELALQTGKVIEQMGKFYP 123
Query: 568 GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD 627
++ G+ + + K +IV+ TPG ++D S K + +++ V+DEAD
Sbjct: 124 ELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWC--SKLKFIDPKKIKVFVLDEAD 178
Query: 628 RMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNK 686
M G + Q RI + + + Q +LFSATF V A+KV+ P I++
Sbjct: 179 VMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLD 238
Query: 687 DITQL-VEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLH 745
I Q V ++F L L + +IF H+++ L +L K G+ L
Sbjct: 239 TIKQYYVLCSSRDEKFQALCNLY-GAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLS 297
Query: 746 GAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPN------HYEDYV 799
G R + I F+ +L+ T+V ARG+DV+++ +VINFD P E Y+
Sbjct: 298 GEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYL 357
Query: 800 HRVGRTGRAGRKGCAITFISEED 822
HR+GRTGR G++G A+ + +
Sbjct: 358 HRIGRTGRFGKRGLAVNMVDSKH 380
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* Length = 563 | Back alignment and structure |
|---|
Score = 355 bits (913), Expect = e-110
Identities = 113/498 (22%), Positives = 219/498 (43%), Gaps = 41/498 (8%)
Query: 396 DEDDDEFMKRVKKTKAEKLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLEL 455
+ D F + + + + + R + + + +
Sbjct: 8 NRDQRNFGRNQRNNNSNRYRNSRFNS------RPRTRSREDDDEVHFDKTTFSKLIHVPK 61
Query: 456 KIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG--RDCIGVAKT 513
+ + K+V + L +I + I ++ + P+Q + + I+S D I AKT
Sbjct: 62 EDNSKEVTLD-SLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKT 120
Query: 514 GSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK----VMGV 569
G+GKT AF++P+ +H+ + +I+APTR+L QI ++++K +
Sbjct: 121 GTGKTFAFLIPIFQHL-INTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKY 179
Query: 570 RCVPVYGGSGVAQQISEL-KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADR 628
CV + GG+ ++++ K IV+ TPGR+ID+L R V Y V+DEADR
Sbjct: 180 ACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVL--EKYSNKFFRFVDYKVLDEADR 237
Query: 629 MFDMGFEPQITRIVQNI-------RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVG-- 679
+ ++GF + I + + +T+LFSAT +V+ LA ++NK + +
Sbjct: 238 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTV 297
Query: 680 --GRSVVNKDITQLVEVRPESDRFLRLLEL-----LGEWYEKGKILIFVHSQEKCDAL-- 730
++ I Q V + + + + E K +IF + + L
Sbjct: 298 DKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCS 357
Query: 731 -FRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINF 789
++ K P L HG Q R S + FK + +L+ T V ARG+D + V+
Sbjct: 358 ILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQI 417
Query: 790 DAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDL--VKALELSEQVVP---DDL 844
P+ +Y+HR+GRT R+G++G ++ FI +++ + +L K + +++Q +++
Sbjct: 418 GVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEKYEPSEEI 477
Query: 845 KALADSFMAKVNQGLEQA 862
K+ + + + +
Sbjct: 478 KSEVLEAVTEEPEDISDI 495
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Length = 391 | Back alignment and structure |
|---|
Score = 346 bits (890), Expect = e-109
Identities = 106/355 (29%), Positives = 192/355 (54%), Gaps = 15/355 (4%)
Query: 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQ 532
L +++ I +E P +Q + +P + G D + AK+G GKT FVL L+ ++
Sbjct: 14 LLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV 73
Query: 533 PPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGT 591
L+M TREL QI + +F+K M V+ +GG + + LK+
Sbjct: 74 TG-----QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNC 128
Query: 592 E-IVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQNIRPDR 649
IVV TPGR++ + K NL+ + + ++DE D+M + + + I + ++
Sbjct: 129 PHIVVGTPGRILALA---RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEK 185
Query: 650 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRS-VVNKDITQL-VEVRPESDRFLRLLEL 707
Q ++FSAT +++ + RK + P+EI V + + + Q V+++ ++++ +L +L
Sbjct: 186 QVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLK-DNEKNRKLFDL 244
Query: 708 LGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNL 767
L + E +++IFV S ++C AL + L++ +P +++H Q +R S FK +
Sbjct: 245 L-DVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRI 303
Query: 768 LIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEED 822
L+AT++ RG+D++ + + N+D P + Y+HRV R GR G KG AITF+S+E+
Sbjct: 304 LVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 358
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Length = 395 | Back alignment and structure |
|---|
Score = 343 bits (883), Expect = e-108
Identities = 113/368 (30%), Positives = 194/368 (52%), Gaps = 25/368 (6%)
Query: 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVL 523
K++ + GL ++++ I + ++KP IQ +ALP+++ R+ I +++G+GKT AF L
Sbjct: 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSL 63
Query: 524 PMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCV-PVYGGSGVAQ 582
ML + + P + +AP+REL +Q +++ K + V +
Sbjct: 64 TMLTRVNPEDA-----SPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK 118
Query: 583 QISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDM-GFEPQITRI 641
QI +++V TPG ++D++ K+ L+++ V+DEAD M D G Q R+
Sbjct: 119 QI-----NAQVIVGTPGTVLDLM---RRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRV 170
Query: 642 VQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQL-VEVRPESDR 700
+ + D Q VLFSATF V A+K++ +++ V I QL ++ + E+D+
Sbjct: 171 KRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADK 230
Query: 701 FLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDF 760
F L EL G +IFV +++ + L+ L G+ LHG +R+ I DF
Sbjct: 231 FDVLTELY-GLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDF 289
Query: 761 KSNVCNLLIATSVAARGLDVKELELVINFDAPNH------YEDYVHRVGRTGRAGRKGCA 814
+ +LI T+V ARG+D+ + +V+N+D P Y+HR+GRTGR GRKG A
Sbjct: 290 REGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVA 349
Query: 815 ITFISEED 822
I+F+ +++
Sbjct: 350 ISFVHDKN 357
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Length = 579 | Back alignment and structure |
|---|
Score = 350 bits (899), Expect = e-108
Identities = 114/454 (25%), Positives = 209/454 (46%), Gaps = 35/454 (7%)
Query: 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLPMLRHIK 530
L +I + I ++ + P+Q + + I+S D I AKTG+GKT AF++P+ +H+
Sbjct: 27 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHL- 85
Query: 531 DQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK----VMGVRCVPVYGGSGVAQQISE 586
+ +I+APTR+L QI ++++K + CV + GG+ +++
Sbjct: 86 INTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNK 145
Query: 587 L-KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI 645
+ K IV+ TPGR+ID+L R V Y V+DEADR+ ++GF + I +
Sbjct: 146 MNKLRPNIVIATPGRLIDVL--EKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGIL 203
Query: 646 -------RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVG----GRSVVNKDITQ-LVE 693
+ +T+LFSAT +V+ LA ++NK + + ++ I Q +V
Sbjct: 204 NEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVI 263
Query: 694 VRPESDRFLRLLEL----LGEWYEKGKILIFVHSQEKCDAL---FRDLLKHGYPCLSLHG 746
++ +E + E K +IF + + L ++ K P L HG
Sbjct: 264 SEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHG 323
Query: 747 AKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTG 806
Q R S + FK + +L+ T V ARG+D + V+ P+ +Y+HR+GRT
Sbjct: 324 KITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTA 383
Query: 807 RAGRKGCAITFISEEDAKYSPDL--VKALELSEQVVP---DDLKALADSFMAKVNQGLEQ 861
R+G++G ++ FI +++ + +L K + +++Q +++K+ + + + +
Sbjct: 384 RSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEKYEPSEEIKSEVLEAVTEEPEDISD 443
Query: 862 AHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGF 895
S +E + A YG
Sbjct: 444 IV-ISLISSYRSCIKEYRFSERRILPEIASTYGV 476
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Length = 479 | Back alignment and structure |
|---|
Score = 345 bits (886), Expect = e-108
Identities = 115/458 (25%), Positives = 205/458 (44%), Gaps = 35/458 (7%)
Query: 379 DSDSDYGDLENDEKPLEDEDDDEFMKRVKKTKAEKLSIVDHSKIDYQPFRKNFYIEVKEI 438
D + ++ E++ + V KT A + K D +
Sbjct: 11 DEQEAAAESLSNLHLKEEKIKPDTNGAVVKTNANAEKTDEEEKED----------RAAQS 60
Query: 439 ARMTPEEVSAYRKQLELKIHGKDVPKP---IKTWHQTGLTSKIMETIRKLNYEKPMPIQA 495
+ ++++ +D P +K++ + L ++++ + + + +P IQ
Sbjct: 61 LLNKLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQE 120
Query: 496 QALPVIMSG--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553
ALP++++ ++ I +++G+GKT AFVL ML ++ P L ++PT EL
Sbjct: 121 NALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKY-----PQCLCLSPTYELA 175
Query: 554 QQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKI 612
Q I + K ++ G+ + + K +IV+ TPG ++D S K
Sbjct: 176 LQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWC--SKLKF 230
Query: 613 TNLRRVTYLVMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLN 671
+ +++ V+DEAD M G + Q RI + + + Q +LFSATF V A+KV+
Sbjct: 231 IDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVP 290
Query: 672 KPVEIQVGGRSVVNKDITQL-VEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDAL 730
P I++ I Q V ++F L L + +IF H+++ L
Sbjct: 291 DPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLY-GAITIAQAMIFCHTRKTASWL 349
Query: 731 FRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFD 790
+L K G+ L G R + I F+ +L+ T+V ARG+DV+++ +VINFD
Sbjct: 350 AAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFD 409
Query: 791 APN------HYEDYVHRVGRTGRAGRKGCAITFISEED 822
P E Y+HR+GRTGR G++G A+ + +
Sbjct: 410 LPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 447
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Length = 414 | Back alignment and structure |
|---|
Score = 318 bits (818), Expect = 5e-99
Identities = 73/419 (17%), Positives = 144/419 (34%), Gaps = 59/419 (14%)
Query: 474 LTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQP 533
+K + Q I+ G+ VA TG GKT ++ L +
Sbjct: 6 EYEDFRSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGK 65
Query: 534 PVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKR---- 589
++ PT LV+Q ++K A V+ Y ++ K
Sbjct: 66 KS--------ALVFPTVTLVKQTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEED 116
Query: 590 GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDR 649
I+V + + K+ + +R ++ +D+ D + ++ I +
Sbjct: 117 DYHILVFSTQFVSKNR----EKL-SQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEI 171
Query: 650 QTVLFSATFPRQVEILARKV---------------------LNKPVEIQVGGRSVVNKDI 688
FS ++ + + + VG V ++I
Sbjct: 172 IRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVARNI 231
Query: 689 TQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAK 748
T + ++ + LLE+ + ILIF ++E+ L+ L + +
Sbjct: 232 THVRISSRSKEKLVELLEIFRD-----GILIFAQTEEEGKELYEYLKRFKFNVGETWS-- 284
Query: 749 DQTDRESTISDFKSNVCNLLIATSV----AARGLDVKE-LELVINFDAPNH--YEDYVHR 801
+ E DFK N+LI RG+D+ E ++ VI + P+ Y+
Sbjct: 285 ---EFEKNFEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQA 341
Query: 802 VGRTGRAGRKGC--AITFISEEDAKYSPDLVKALE-LSEQVVPDDLKALADSFMAKVNQ 857
GR+ R ++ I EED + L L ++E+ + ++ +A + +V +
Sbjct: 342 SGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLLLIAEEEIIEEAEANWKELVHEVEE 400
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Length = 249 | Back alignment and structure |
|---|
Score = 263 bits (674), Expect = 7e-81
Identities = 85/216 (39%), Positives = 122/216 (56%), Gaps = 7/216 (3%)
Query: 463 PKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFV 522
+ KT+ G+T + E +L + KP IQ +A+P+ + GRD IG+A+TGSGKT AF
Sbjct: 39 EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFA 98
Query: 523 LPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQ 582
LP+L + + P L++ PTREL QI +GV+ + GG
Sbjct: 99 LPILNALLETPQ-----RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMS 153
Query: 583 QISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIV 642
Q L + I++ TPGR+ID L K NLR + YLVMDEADR+ +M FE ++ +I+
Sbjct: 154 QSLALAKKPHIIIATPGRLIDHL--ENTKGFNLRALKYLVMDEADRILNMDFETEVDKIL 211
Query: 643 QNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQV 678
+ I DR+T LFSAT ++V+ L R L PV+ V
Sbjct: 212 KVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Length = 236 | Back alignment and structure |
|---|
Score = 251 bits (643), Expect = 1e-76
Identities = 76/235 (32%), Positives = 120/235 (51%), Gaps = 9/235 (3%)
Query: 444 EEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMS 503
E +S + E K I + L+ K ++ +++ Y IQ Q + + +
Sbjct: 7 ESISRLMQNYE-----KINVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQ 61
Query: 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563
G+D +G AKTGSGKTLAF++P+L + + DG LI++PTREL Q +RK
Sbjct: 62 GKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTST-DGLGVLIISPTRELAYQTFEVLRKV 120
Query: 564 AKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVM 623
K + GG + + + I+VCTPGR++ + + + + LV+
Sbjct: 121 GKNHDFSAGLIIGGKDLKHEAERIN-NINILVCTPGRLLQHMDETVS--FHATDLQMLVL 177
Query: 624 DEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQV 678
DEADR+ DMGF + +++N+ RQT+LFSAT + V+ LAR L P + V
Sbjct: 178 DEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWV 232
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Length = 207 | Back alignment and structure |
|---|
Score = 242 bits (620), Expect = 7e-74
Identities = 85/206 (41%), Positives = 117/206 (56%), Gaps = 7/206 (3%)
Query: 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQ 532
L +I+E + P PIQA ALP+ + G+D IG A+TG+GKTLAF LP+ +
Sbjct: 7 PLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERL--A 64
Query: 533 PPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTE 592
P G P L++ PTREL Q+ S++ A ++ V VYGG+G +Q L RG +
Sbjct: 65 PSQERGRKPRALVLTPTRELALQVASELTAVAP--HLKVVAVYGGTGYGKQKEALLRGAD 122
Query: 593 IVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTV 652
VV TPGR +D L + +L RV V+DEAD M MGFE ++ ++ P RQT+
Sbjct: 123 AVVATPGRALDYL---RQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTL 179
Query: 653 LFSATFPRQVEILARKVLNKPVEIQV 678
LFSAT P + LA + + PV I V
Sbjct: 180 LFSATLPSWAKRLAERYMKNPVLINV 205
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Length = 206 | Back alignment and structure |
|---|
Score = 241 bits (618), Expect = 1e-73
Identities = 63/205 (30%), Positives = 111/205 (54%), Gaps = 9/205 (4%)
Query: 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQ 532
L +++ I ++ +EKP PIQ +++P+ +SGRD + AK G+GK+ A+++P+L +
Sbjct: 9 CLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLD-- 66
Query: 533 PPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGT 591
D +++ PTREL Q+ + +K M G + + GG+ + I L
Sbjct: 67 ---LKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTV 123
Query: 592 EIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQT 651
+V+ TPGR++D++ + + V +V+DEAD++ F + I+ + +RQ
Sbjct: 124 HVVIATPGRILDLI---KKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQI 180
Query: 652 VLFSATFPRQVEILARKVLNKPVEI 676
+L+SATFP V+ L KP EI
Sbjct: 181 LLYSATFPLSVQKFMNSHLEKPYEI 205
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Length = 219 | Back alignment and structure |
|---|
Score = 241 bits (618), Expect = 2e-73
Identities = 64/210 (30%), Positives = 105/210 (50%), Gaps = 12/210 (5%)
Query: 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQ 532
I+E I+ L + KP IQ + +P + G +G ++TG+GKT A++LP++ IK
Sbjct: 10 PFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIK-- 67
Query: 533 PPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM----GVRCVPVYGGSGVAQQISELK 588
+I APTREL QI+ + K K + + GG+ + + +L
Sbjct: 68 ---PERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLN 124
Query: 589 RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD 648
IV+ TPGR+ D + + ++ LV+DEAD M DMGF + +I + D
Sbjct: 125 VQPHIVIGTPGRINDFI---REQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKD 181
Query: 649 RQTVLFSATFPRQVEILARKVLNKPVEIQV 678
Q ++FSAT P +++ +K + P + V
Sbjct: 182 LQMLVFSATIPEKLKPFLKKYMENPTFVHV 211
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Length = 237 | Back alignment and structure |
|---|
Score = 230 bits (588), Expect = 4e-69
Identities = 69/216 (31%), Positives = 107/216 (49%), Gaps = 9/216 (4%)
Query: 464 KPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVL 523
+ + + L ++ I +EKP IQ +A+ + G D I A++G+GKT F +
Sbjct: 27 EIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAI 86
Query: 524 PMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ 583
+L+ ++ + L++APTREL QQI I MG C GG+ V +
Sbjct: 87 SILQQLEIEFK-----ETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNE 141
Query: 584 ISELK-RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIV 642
+ +L+ IVV TPGR+ D+L + + + + V+DEAD M GF+ QI I
Sbjct: 142 MQKLQAEAPHIVVGTPGRVFDML---NRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIF 198
Query: 643 QNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQV 678
Q + Q VL SAT P V + +K + P+ I V
Sbjct: 199 QKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILV 234
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 231 bits (590), Expect = 4e-69
Identities = 70/204 (34%), Positives = 116/204 (56%), Gaps = 4/204 (1%)
Query: 474 LTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQP 533
+ ++ I+++ + IQ +++ ++ GRD + AKTGSGKTLAF++P + I
Sbjct: 61 VNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLR 120
Query: 534 PVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEI 593
+G LI++PTREL Q +++ + GGS + + +L G I
Sbjct: 121 F-MPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINI 179
Query: 594 VVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVL 653
+V TPGR++D + + G + + LV+DEADR+ D+GFE ++ +I++ + RQT+L
Sbjct: 180 IVATPGRLLDHMQNTPG--FMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTML 237
Query: 654 FSATFPRQVEILARKVLNK-PVEI 676
FSAT R+VE LAR L K P+ +
Sbjct: 238 FSATQTRKVEDLARISLKKEPLYV 261
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Length = 224 | Back alignment and structure |
|---|
Score = 227 bits (580), Expect = 4e-68
Identities = 66/215 (30%), Positives = 102/215 (47%), Gaps = 9/215 (4%)
Query: 464 KPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVL 523
K + + L ++ + +E+P IQ +A+ I+ G D + A++G+GKT F +
Sbjct: 11 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSI 70
Query: 524 PMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ 583
L+ I P L++APTREL QI + A M ++ GG+ +
Sbjct: 71 AALQRIDTSVK-----APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVED 125
Query: 584 ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ 643
L R +IVV TPGR+ D + + ++ ++DEAD M GF+ QI +I
Sbjct: 126 AEGL-RDAQIVVGTPGRVFDNI---QRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFT 181
Query: 644 NIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQV 678
+ P Q VL SAT P V + K + PV I V
Sbjct: 182 LLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILV 216
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Length = 185 | Back alignment and structure |
|---|
Score = 222 bits (569), Expect = 4e-67
Identities = 68/177 (38%), Positives = 103/177 (58%)
Query: 674 VEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRD 733
+ + +++ITQ V ESD+ LL+LL + L+FV +++ D+L
Sbjct: 6 HHENLYFQGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDF 65
Query: 734 LLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPN 793
L GY C S+HG + Q DRE + F+S +L+AT+VAARGLD+ ++ VINFD P+
Sbjct: 66 LYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPS 125
Query: 794 HYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADS 850
E+YVHR+GRTGR G G A +F +E + + DL+ L ++Q VP L+ +A
Sbjct: 126 DIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAYE 182
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Length = 220 | Back alignment and structure |
|---|
Score = 223 bits (571), Expect = 5e-67
Identities = 60/209 (28%), Positives = 105/209 (50%), Gaps = 11/209 (5%)
Query: 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQ 532
L +++ I +E P +Q + +P + G D + AK+G GKT FVL L+ ++
Sbjct: 20 LLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV 79
Query: 533 PPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGT 591
L+M TREL QI + +F+K M V+ +GG + + LK+
Sbjct: 80 TG-----QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNC 134
Query: 592 E-IVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQNIRPDR 649
IVV TPGR++ + K NL+ + + ++DE D+M + + + I + ++
Sbjct: 135 PHIVVGTPGRILALA---RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEK 191
Query: 650 QTVLFSATFPRQVEILARKVLNKPVEIQV 678
Q ++FSAT +++ + RK + P+EI V
Sbjct: 192 QVMMFSATLSKEIRPVCRKFMQDPMEIFV 220
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Length = 230 | Back alignment and structure |
|---|
Score = 218 bits (558), Expect = 4e-65
Identities = 62/208 (29%), Positives = 104/208 (50%), Gaps = 11/208 (5%)
Query: 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQ 532
L+ ++E +R +E+P P+Q +A+P+ G D I AK+G+GKT F L +
Sbjct: 30 LLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLV-- 87
Query: 533 PPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGT 591
LI+APTRE+ QIHS I M G+ C GG+ ++Q + LK+
Sbjct: 88 ---LENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKC- 143
Query: 592 EIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG-FEPQITRIVQNIRPDRQ 650
I V +PGR+ ++ N + ++DEAD++ + G F+ QI I ++ +Q
Sbjct: 144 HIAVGSPGRIKQLI---ELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQ 200
Query: 651 TVLFSATFPRQVEILARKVLNKPVEIQV 678
+ SAT+P + K + P +++
Sbjct: 201 MLAVSATYPEFLANALTKYMRDPTFVRL 228
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Length = 191 | Back alignment and structure |
|---|
Score = 210 bits (536), Expect = 1e-62
Identities = 63/182 (34%), Positives = 93/182 (51%), Gaps = 3/182 (1%)
Query: 668 KVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKC 727
V + + D+ Q VE E + + LLE L + +LIF +
Sbjct: 10 GVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQK--TPPPVLIFAEKKADV 67
Query: 728 DALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVI 787
DA+ LL G +++HG KDQ +R I F+ ++L+AT VA++GLD ++ VI
Sbjct: 68 DAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVI 127
Query: 788 NFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEE-DAKYSPDLVKALELSEQVVPDDLKA 846
N+D P E+YVHR+GRTG +G G A TFI++ D DL L ++Q VP L+
Sbjct: 128 NYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQV 187
Query: 847 LA 848
L
Sbjct: 188 LH 189
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Length = 300 | Back alignment and structure |
|---|
Score = 211 bits (540), Expect = 1e-61
Identities = 61/219 (27%), Positives = 111/219 (50%), Gaps = 14/219 (6%)
Query: 464 KPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAF 521
+K++ + L ++++ + + + +P IQ ALP++++ ++ I +++G+GKT AF
Sbjct: 89 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148
Query: 522 VLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGV 580
VL ML ++ P L ++PT EL Q I + K ++ G+ +
Sbjct: 149 VLAMLSQVEPANKY-----PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKL 203
Query: 581 AQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQIT 639
+ K +IV+ TPG ++D S K + +++ V+DEAD M G + Q
Sbjct: 204 ERG---QKISEQIVIGTPGTVLDWC--SKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 258
Query: 640 RIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQV 678
RI + + + Q +LFSATF V A+KV+ P I++
Sbjct: 259 RIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKL 297
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Length = 170 | Back alignment and structure |
|---|
Score = 151 bits (385), Expect = 2e-42
Identities = 48/140 (34%), Positives = 68/140 (48%)
Query: 686 KDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLH 745
K I Q + + LL L + E + ++FV +E+ L L + G L
Sbjct: 2 KKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLE 61
Query: 746 GAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRT 805
G Q R I N+L+AT VAARG+D+ ++ V NFD P + Y+HR+GRT
Sbjct: 62 GEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRT 121
Query: 806 GRAGRKGCAITFISEEDAKY 825
RAGRKG AI+ + D
Sbjct: 122 ARAGRKGTAISLVEAHDHLL 141
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Length = 163 | Back alignment and structure |
|---|
Score = 149 bits (379), Expect = 9e-42
Identities = 55/139 (39%), Positives = 83/139 (59%), Gaps = 3/139 (2%)
Query: 688 ITQ-LVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHG 746
I +++VR E ++F L ++L +IF ++E + L +L GYPC +HG
Sbjct: 10 IEHAVIQVR-EENKFSLLKDVL-MTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHG 67
Query: 747 AKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTG 806
Q DR +++FK L+AT VAARG+D++ + LVIN+D P E YVHR GRTG
Sbjct: 68 GMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTG 127
Query: 807 RAGRKGCAITFISEEDAKY 825
RAG KG AI+F++ + ++
Sbjct: 128 RAGNKGKAISFVTAFEKRF 146
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Length = 172 | Back alignment and structure |
|---|
Score = 149 bits (378), Expect = 1e-41
Identities = 53/159 (33%), Positives = 95/159 (59%), Gaps = 4/159 (2%)
Query: 688 ITQL-VEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHG 746
+ Q V+++ ++++ +L +LL E +++IFV S ++C AL + L++ +P +++H
Sbjct: 6 LQQYYVKLK-DNEKNRKLFDLLDV-LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHR 63
Query: 747 AKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTG 806
Q +R S FK +L+AT++ RG+D++ + + N+D P + Y+HRV R G
Sbjct: 64 GMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAG 123
Query: 807 RAGRKGCAITFIS-EEDAKYSPDLVKALELSEQVVPDDL 844
R G KG AITF+S E DAK D+ E++ +PD++
Sbjct: 124 RFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 162
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Length = 165 | Back alignment and structure |
|---|
Score = 148 bits (375), Expect = 3e-41
Identities = 47/139 (33%), Positives = 81/139 (58%), Gaps = 2/139 (1%)
Query: 688 ITQL-VEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHG 746
I Q V V E ++ L +L + + +IF +++ K + L L + +++
Sbjct: 4 IKQFYVNVEEEEYKYECLTDLY-DSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYS 62
Query: 747 AKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTG 806
Q +R++ + +F+S +LI+T + ARG+DV+++ LVIN+D P + E+Y+HR+GR G
Sbjct: 63 DLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGG 122
Query: 807 RAGRKGCAITFISEEDAKY 825
R GRKG AI F++ ED
Sbjct: 123 RFGRKGVAINFVTNEDVGA 141
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Length = 175 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 6e-40
Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 8/145 (5%)
Query: 688 ITQL-VEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHG 746
I Q V D++ L + G+ +IF ++ L ++++ G+ L G
Sbjct: 8 IRQYYVLCEHRKDKYQALCNIY-GSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSG 66
Query: 747 AKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPN------HYEDYVH 800
R S I F+ +LI T+V ARG+DVK++ +V+NFD P YE Y+H
Sbjct: 67 ELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLH 126
Query: 801 RVGRTGRAGRKGCAITFISEEDAKY 825
R+GRTGR G+KG A I ++
Sbjct: 127 RIGRTGRFGKKGLAFNMIEVDELPS 151
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Length = 212 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 5e-36
Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 1/132 (0%)
Query: 688 ITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGA 747
+ P R L +LL + ++F ++ + + + + LL+ G+P +LHG
Sbjct: 6 YEEEAVPAPVRGRLEVLSDLL-YVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGD 64
Query: 748 KDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGR 807
Q +RE + F+ +L+AT VAARGLD+ +++LV+++ P+ E Y HR GRTGR
Sbjct: 65 LSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGR 124
Query: 808 AGRKGCAITFIS 819
AGR G +
Sbjct: 125 AGRGGRVVLLYG 136
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Length = 300 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 2e-33
Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 1/132 (0%)
Query: 688 ITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGA 747
+ P R L +LL + ++F ++ + + + + LL+ G+P +LHG
Sbjct: 3 YEEEAVPAPVRGRLEVLSDLL-YVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGD 61
Query: 748 KDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGR 807
Q +RE + F+ +L+AT VAARGLD+ +++LV+++ P+ E Y HR GRTGR
Sbjct: 62 MSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGR 121
Query: 808 AGRKGCAITFIS 819
AGR G +
Sbjct: 122 AGRGGRVVLLYG 133
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
Score = 99.9 bits (248), Expect = 6e-22
Identities = 44/228 (19%), Positives = 91/228 (39%), Gaps = 27/228 (11%)
Query: 606 CTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEIL 665
+ L L + A + + + ++ + + + A+ EI
Sbjct: 265 GNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASK----EIF 320
Query: 666 ARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKG---KILIFVH 722
+ K + K + + + Q E+ + + +L E++ E ++ KI++F +
Sbjct: 321 SDKRMKKAISL-----------LVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTN 369
Query: 723 SQEKCDALFRDLLKHGYPCLSLHGAK--------DQTDRESTISDFKSNVCNLLIATSVA 774
+E + +L+K G G Q +++ + +F N+L+ATSV
Sbjct: 370 YRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVG 429
Query: 775 ARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEED 822
GLDV E++LV+ ++ + R GRTGR G I +++
Sbjct: 430 EEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRH-MPGRVIILMAKGT 476
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
Score = 87.2 bits (215), Expect = 7e-18
Identities = 45/231 (19%), Positives = 87/231 (37%), Gaps = 13/231 (5%)
Query: 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP 548
+P Q +C+ V TG GKTL ++ + L++AP
Sbjct: 9 QPRIYQEVIYAKCK-ETNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKV-------LMLAP 60
Query: 549 TRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTS 608
T+ LV Q R+ + + V + G ++ S+ +++V TP + + L
Sbjct: 61 TKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEER-SKAWARAKVIVATPQTIENDLLA- 118
Query: 609 GGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARK 668
+L V+ +V DEA R I R + + + +A+ E + +
Sbjct: 119 --GRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKI-ME 175
Query: 669 VLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILI 719
V+N + RS + D+ V+ + L E+ E + + ++
Sbjct: 176 VINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREML 226
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A* 1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A Length = 666 | Back alignment and structure |
|---|
Score = 97.8 bits (243), Expect = 6e-21
Identities = 63/380 (16%), Positives = 106/380 (27%), Gaps = 82/380 (21%)
Query: 479 METIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAG 538
+E++ + V S + A TGSGK+ + P A
Sbjct: 207 VESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKS--------TKV---PAAYAA 255
Query: 539 DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTP 598
G L++ P+ + + K + + + G + T
Sbjct: 256 QGYKVLVLNPSVAATLGFGAYMSK----------AHGIDPNIRTGVRTITTGAPVTYSTY 305
Query: 599 GR-MIDILCTSGGKITNLRRVTYLVMDEADRM---FDMGFEPQITRIVQNIRPDRQTVLF 654
G+ + D C + ++ DE +G R VL
Sbjct: 306 GKFLADGGC-------SGGAYDIIICDECHSTDSTTILGIG--TVLDQAETAGARLVVLA 356
Query: 655 SATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEK 714
+AT P V + N + E + + + + E
Sbjct: 357 TATPPGSVTV---PHPNIEEVA---------------LSNTGEIPFYGKAIPI--EAIRG 396
Query: 715 GKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVA 774
G+ LIF HS++KCD L L G ++ + D + + ++AT
Sbjct: 397 GRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSVIPTIGDVV-------VVATDAL 449
Query: 775 ARGL--DVK-------ELELVINFDAPNH-----------YEDYVHRVGRTGRAGRKGCA 814
G D + ++F R GRTGR GR+G
Sbjct: 450 MTGYTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGIY 508
Query: 815 ITFISEEDAKYSPDLVKALE 834
E D E
Sbjct: 509 RFVTPGERPSGMFDSSVLCE 528
|
| >3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437 | Back alignment and structure |
|---|
Score = 90.7 bits (224), Expect = 4e-19
Identities = 38/198 (19%), Positives = 74/198 (37%)
Query: 3 HSHRDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDRE 62
R++++++ RE+ RS +++ + R R R+R ++
Sbjct: 224 GPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKD 283
Query: 63 KEREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRE 122
K+R+ KR +R +ER R +R+R+ E R + D + D
Sbjct: 284 KDRDRKRRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGP 343
Query: 123 RKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPRE 182
+ R + S S+ ++ RDR R R D +HK R R +
Sbjct: 344 EEKGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDNGL 403
Query: 183 KLVEDDSDKKEKKTREEE 200
+ + +DS ++ +
Sbjct: 404 EGLGNDSRDMYMESEGGD 421
|
| >3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437 | Back alignment and structure |
|---|
Score = 88.4 bits (218), Expect = 2e-18
Identities = 38/195 (19%), Positives = 75/195 (38%)
Query: 3 HSHRDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDRE 62
R+R+R + + ++ R + ++E+ + R+R + +DRDR R
Sbjct: 234 DRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSS 293
Query: 63 KEREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRE 122
+ RE R KE R E E + + + + ++ +++DRE
Sbjct: 294 RSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRE 353
Query: 123 RKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPRE 182
R+ R +R + D D D+DR+ KR R + ++ R + N ++S
Sbjct: 354 RRRSHRSERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDNGLEGLGNDSRDM 413
Query: 183 KLVEDDSDKKEKKTR 197
+ + D
Sbjct: 414 YMESEGGDGYLAPEN 428
|
| >3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437 | Back alignment and structure |
|---|
Score = 88.0 bits (217), Expect = 3e-18
Identities = 45/215 (20%), Positives = 82/215 (38%), Gaps = 1/215 (0%)
Query: 3 HSHRDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDRE 62
S D HR++ R ERE+ S E ++E+ + + RDR RR +R
Sbjct: 216 TSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERR 275
Query: 63 KEREEKRERAREKEREREK-RDREREDRERERERERERRERDREREKRERERDRDKEKDR 121
+ RE +++ R+++R + R+R R +RER+ E + E + D +
Sbjct: 276 RSRERSKDKDRDRKRRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGEL 335
Query: 122 ERKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPR 181
D + + + D R + RRR D ++R RE R ++
Sbjct: 336 GPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRGERGSERGRDEARGG 395
Query: 182 EKLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRR 216
++ + +R+ +E E E
Sbjct: 396 GGGQDNGLEGLGNDSRDMYMESEGGDGYLAPENGY 430
|
| >3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437 | Back alignment and structure |
|---|
Score = 86.8 bits (214), Expect = 6e-18
Identities = 34/180 (18%), Positives = 61/180 (33%)
Query: 3 HSHRDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDRE 62
S R R + ++K + R + + + + +E+ + + R D
Sbjct: 258 RSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERARRERERKEELRGGGGDMA 317
Query: 63 KEREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRE 122
+ E + D E+ R+R+RERR R +R R+RDRD+++DRE
Sbjct: 318 EPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRDRDRDRE 377
Query: 123 RKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPRE 182
K +R R + + +D E E+ E
Sbjct: 378 HKRGERGSERGRDEARGGGGGQDNGLEGLGNDSRDMYMESEGGDGYLAPENGYLMEAAPE 437
|
| >3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437 | Back alignment and structure |
|---|
Score = 86.8 bits (214), Expect = 6e-18
Identities = 37/232 (15%), Positives = 80/232 (34%)
Query: 1 MAHSHRDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRD 60
+ + S D+ + + + R R+R ++R+R R
Sbjct: 198 GTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRS 257
Query: 61 REKEREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKD 120
R ++R + ++ER R + + +DR+R+R R R RERE++E R +
Sbjct: 258 RSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERARRERERKEELRGGGGDMA 317
Query: 121 RERKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESP 180
++ D + + D ++ R D + + R R +R RD + +
Sbjct: 318 EPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRDRDRDRE 377
Query: 181 REKLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEES 232
++ +++ +D + + E + E
Sbjct: 378 HKRGERGSERGRDEARGGGGGQDNGLEGLGNDSRDMYMESEGGDGYLAPENG 429
|
| >3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437 | Back alignment and structure |
|---|
Score = 82.2 bits (202), Expect = 2e-16
Identities = 43/242 (17%), Positives = 76/242 (31%)
Query: 8 RDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREE 67
R + + + D+ E+ R RE+ RE
Sbjct: 189 PRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRER 248
Query: 68 KRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRD 127
+ER R + R R++R R R + ER R RER + KR R R++ + + +
Sbjct: 249 DKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERARRERERKEE 308
Query: 128 REKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVED 187
++ S+ E +R R + S RE+ +
Sbjct: 309 LRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDR 368
Query: 188 DSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGDANVEEPKA 247
D D+ + + +R DE + + L + E+ G P+
Sbjct: 369 DRDRDRDREHKRGERGSERGRDEARGGGGGQDNGLEGLGNDSRDMYMESEGGDGYLAPEN 428
Query: 248 GR 249
G
Sbjct: 429 GY 430
|
| >3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437 | Back alignment and structure |
|---|
Score = 79.1 bits (194), Expect = 2e-15
Identities = 48/244 (19%), Positives = 92/244 (37%), Gaps = 3/244 (1%)
Query: 8 RDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREE 67
+ + + D D+ RDRDRDRE+ER E
Sbjct: 184 VKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERERRE 243
Query: 68 KRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRD 127
+ ++ R R R+R R R R++E RR R+R ++ ++R+R R + RER R+
Sbjct: 244 RSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKD-KDRDRKRRSSRSRERARRE 302
Query: 128 REKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVED 187
RE++ ++ D + + D E + + RD + E R
Sbjct: 303 RERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSH--RS 360
Query: 188 DSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGDANVEEPKA 247
+ +++ + R+ + + E ++ + E+ R + + E + D +E
Sbjct: 361 ERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDNGLEGLGNDSRDMYMESEGG 420
Query: 248 GRNW 251
Sbjct: 421 DGYL 424
|
| >3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437 | Back alignment and structure |
|---|
Score = 74.5 bits (182), Expect = 7e-14
Identities = 43/259 (16%), Positives = 82/259 (31%)
Query: 3 HSHRDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDRE 62
R + + R + D D R +R
Sbjct: 170 DGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLP 229
Query: 63 KEREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRE 122
++ +ER RE+ R R R+R R R RD+E +R RER +DK++DR+
Sbjct: 230 HRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRK 289
Query: 123 RKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPRE 182
R+S +R + E + +E + + D +E R+
Sbjct: 290 RRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRD 349
Query: 183 KLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGDANV 242
+ E + ++ R + + ++ + E R + E + + G N
Sbjct: 350 RDRERRRSHRSERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDNGLEGLGND 409
Query: 243 EEPKAGRNWTLDREDSDDE 261
+ D + +
Sbjct: 410 SRDMYMESEGGDGYLAPEN 428
|
| >3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437 | Back alignment and structure |
|---|
Score = 71.4 bits (174), Expect = 5e-13
Identities = 43/256 (16%), Positives = 82/256 (32%), Gaps = 1/256 (0%)
Query: 12 KEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEKRER 71
+ + + + + R +R +
Sbjct: 175 LVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRD 234
Query: 72 AREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRDREKR 131
+ RE+ ++RER R R R+RR R R R+K ER R R++ KD++R + R R
Sbjct: 235 RDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSR 294
Query: 132 RKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVEDDSDK 191
+ + E K+ R + E + E+ D +
Sbjct: 295 SRERARRERERKEELR-GGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRE 353
Query: 192 KEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGDANVEEPKAGRNW 251
+ + R E R D + ++ +R + E R + + + R+
Sbjct: 354 RRRSHRSERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDNGLEGLGNDSRDM 413
Query: 252 TLDREDSDDEEVPQTG 267
++ E D P+ G
Sbjct: 414 YMESEGGDGYLAPENG 429
|
| >3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437 | Back alignment and structure |
|---|
Score = 67.2 bits (163), Expect = 1e-11
Identities = 38/266 (14%), Positives = 78/266 (29%)
Query: 3 HSHRDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDRE 62
+ + +K + + E+ + + R R R+
Sbjct: 155 RDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRD 214
Query: 63 KEREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRE 122
R++ +R + RER R R + R R R ++K+
Sbjct: 215 DTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEER 274
Query: 123 RKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPRE 182
R+SR+R K + + +R R ++ + + + +D P E
Sbjct: 275 RRSRERSKDKDRDRKRRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGE 334
Query: 183 KLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGDANV 242
+ +EK + + + E + R R ++ ++ E R +A
Sbjct: 335 LGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRGERGSERGRDEARG 394
Query: 243 EEPKAGRNWTLDREDSDDEEVPQTGK 268
DS D + G
Sbjct: 395 GGGGQDNGLEGLGNDSRDMYMESEGG 420
|
| >3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437 | Back alignment and structure |
|---|
Score = 61.4 bits (148), Expect = 9e-10
Identities = 43/267 (16%), Positives = 84/267 (31%), Gaps = 1/267 (0%)
Query: 13 EKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEKRERA 72
E E R+ + D + + E+ + R R +
Sbjct: 150 EYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIR 209
Query: 73 REKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRDREKRR 132
+ + D RER+R RER+++R++ + R R R R + R
Sbjct: 210 HSGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSR 269
Query: 133 KVESDDSDEDKDRDRKRRR-RHDDDHKERVRERSLSRSNRHRDENDESPREKLVEDDSDK 191
E ++ +D+ R R R +ER R + D + + + D
Sbjct: 270 DKEERRRSRERSKDKDRDRKRRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDD 329
Query: 192 KEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGDANVEEPKAGRNW 251
+ D + + ++ RRR + +R+ + +R+ + E + R
Sbjct: 330 GPPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRGERGSERGR 389
Query: 252 TLDREDSDDEEVPQTGKSETDMDADEE 278
R ++ G D E
Sbjct: 390 DEARGGGGGQDNGLEGLGNDSRDMYME 416
|
| >3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437 | Back alignment and structure |
|---|
Score = 59.5 bits (143), Expect = 3e-09
Identities = 36/251 (14%), Positives = 71/251 (28%)
Query: 35 DKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEKRERAREKEREREKRDREREDRERERE 94
D + ++ R R R R + + +
Sbjct: 170 DGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLP 229
Query: 95 RERERRERDREREKRERERDRDKEKDRERKSRDREKRRKVESDDSDEDKDRDRKRRRRHD 154
R+R+RER +R RERD+++E+ R R R + R + ++ ++R + + R
Sbjct: 230 HRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRK 289
Query: 155 DDHKERVRERSLSRSNRHRDENDESPREKLVEDDSDKKEKKTREEELEDEQRKLDEEMEK 214
R + + E + E D +E+
Sbjct: 290 RRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRD 349
Query: 215 RRRRVQEWQELKRKKEESERENRGDANVEEPKAGRNWTLDREDSDDEEVPQTGKSETDMD 274
R R + +R++ +R + + E G D
Sbjct: 350 RDRERRRSHRSERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDNGLEGLGND 409
Query: 275 ADEEPKPSENQ 285
+ + SE
Sbjct: 410 SRDMYMESEGG 420
|
| >3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 4e-07
Identities = 36/262 (13%), Positives = 69/262 (26%), Gaps = 1/262 (0%)
Query: 25 EREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEKRERAREKEREREKRDR 84
E E D + +K R +R R + R + + R
Sbjct: 150 EYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIR 209
Query: 85 EREDRERERERERERRERDREREKRERERDRDKEKDRERKSRDREKRRKVESDDSDEDKD 144
+ R ER R++ +E+ RER +R +
Sbjct: 210 HSGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSR 269
Query: 145 RDRKRRR-RHDDDHKERVRERSLSRSNRHRDENDESPREKLVEDDSDKKEKKTREEELED 203
+RRR R K+R R+R SRS E E + + + +D
Sbjct: 270 DKEERRRSRERSKDKDRDRKRRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDD 329
Query: 204 EQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGDANVEEPKAGRNWTLDREDSDDEEV 263
+ + ++ E + + + E +
Sbjct: 330 GPPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRGERGSERGR 389
Query: 264 PQTGKSETDMDADEEPKPSENQ 285
+ D E ++++
Sbjct: 390 DEARGGGGGQDNGLEGLGNDSR 411
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 | Back alignment and structure |
|---|
Score = 84.9 bits (210), Expect = 7e-17
Identities = 80/405 (19%), Positives = 144/405 (35%), Gaps = 74/405 (18%)
Query: 473 GLTSKIMETIRKLNYEKPMPIQAQALP-VIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKD 531
+ +I T+++ E P QA+AL I+ G++ + T SGKTL + M+ I
Sbjct: 7 RVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILT 66
Query: 532 QPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGT 591
Q G I P + L ++ + + + K +G+R G E
Sbjct: 67 Q------GGKAVYI-VPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSK---DEWLGKY 115
Query: 592 EIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQT 651
+I++ T + D L G ++ V LV DE + + I+ ++ Q
Sbjct: 116 DIIIATAEKF-DSLLRHGSSW--IKDVKILVADEIHLIGSRDRGATLEVILAHMLGKAQI 172
Query: 652 VLFSATFPRQVEIL----ARKVLNK--PVEIQVGGRSVVNKDITQLVEVRPESDRFLRLL 705
+ SAT E+ A +++ PV+++ R V + + DRF
Sbjct: 173 IGLSATIGNPEELAEWLNAELIVSDWRPVKLR---RGVFYQGF--VTWEDGSIDRFSSWE 227
Query: 706 ELLGEWYEKGK-ILIFVHSQEKCDALFRDLLKHGY------------------------- 739
EL+ + K K LIFV+ + K + + +L K
Sbjct: 228 ELVYDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNE 287
Query: 740 ---PCLSL-----HGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDA 791
+ H + +R +F+ + ++AT + G++ VI
Sbjct: 288 KLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPA-FRVI-IRD 345
Query: 792 PNHYEDYVHR----------VGRTGRAG--RKGCAITFISEEDAK 824
Y D+ +GR GR G I + +D +
Sbjct: 346 IWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPR 390
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Length = 702 | Back alignment and structure |
|---|
Score = 83.7 bits (207), Expect = 2e-16
Identities = 79/407 (19%), Positives = 151/407 (37%), Gaps = 82/407 (20%)
Query: 455 LKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTG 514
+K+ ++ + I ++ L + I +L P QA+A+ + SG++ + T
Sbjct: 1 MKVE--ELAESISSYAVGILKEE---GIEELF-----PPQAEAVEKVFSGKNLLLAMPTA 50
Query: 515 SGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPV 574
+GKTL + M+R L + P R L + + +K+ K +G+R
Sbjct: 51 AGKTLLAEMAMVREAIKGGKS--------LYVVPLRALAGEKYESFKKWEK-IGLRIGIS 101
Query: 575 YGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDE----ADRMF 630
G + E +I+V T + D L + ++ V+ LV+DE
Sbjct: 102 TGDY---ESRDEHLGDCDIIVTTSEKA-DSLIRNRASW--IKAVSCLVVDEIHLLDSE-- 153
Query: 631 DMGF--EPQITRIVQNIRPDRQTVLFSATFPRQVEI---LARKVLNK---PVEIQVGGRS 682
G E +T++ + + + + SAT P EI L PV + G
Sbjct: 154 KRGATLEILVTKMRR-MNKALRVIGLSATAPNVTEIAEWLDADYYVSDWRPVPLVEG--- 209
Query: 683 VVNKDITQLVEVRPESDRFLRLLELLGEWYEKGK-ILIFVHSQEKC-------------- 727
V+ + +L + + R ++ EL+ E + +L+F ++
Sbjct: 210 VLCEGTLELFDGAFSTSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKY 269
Query: 728 ---DALFRDLLKHGYPCLS-------------LHGAKDQTDRESTISDFKSNVCNLLIAT 771
+ L + +L+ +S H R F+ +++AT
Sbjct: 270 VENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVAT 329
Query: 772 SVAARGLDVKELELVINFDAPNHYEDYVHRVGRT------GRAGRKG 812
A G+++ VI + ++ Y R+ + GRAGR G
Sbjct: 330 PTLAAGVNLPA-RRVI-VRSLYRFDGYSKRIKVSEYKQMAGRAGRPG 374
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Length = 216 | Back alignment and structure |
|---|
Score = 71.8 bits (176), Expect = 3e-14
Identities = 26/155 (16%), Positives = 56/155 (36%), Gaps = 5/155 (3%)
Query: 475 TSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPP 534
+ + P Q + + G++ I TGSGKT V H+ +
Sbjct: 19 EENVAARASPEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK 78
Query: 535 VAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIV 594
+ G V +++ LV+Q+ + R + + G + + E+ + +I+
Sbjct: 79 ASEP-GKV-IVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVKSCDII 136
Query: 595 VCTPGRMIDILCTSGG---KITNLRRVTYLVMDEA 626
+ T + + L L + +++DE
Sbjct: 137 ISTAQILENSLLNLENGEDAGVQLSDFSLIIIDEC 171
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 75.3 bits (185), Expect = 9e-14
Identities = 39/228 (17%), Positives = 93/228 (40%), Gaps = 10/228 (4%)
Query: 8 RDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREE 67
R E+ + K E R ER+Q +++ + +++ + + + + E EE
Sbjct: 854 RQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEE 913
Query: 68 KRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRD 127
R R K++E E+ E E R E E ++ + ++++ +++ ++ ++ E +
Sbjct: 914 MRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQK 973
Query: 128 REKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVED 187
+ + + +D +++ KER + +E L E+
Sbjct: 974 LQLEKVTADGKIKKMEDDILIMEDQNNKLTKER----------KLLEERVSDLTTNLAEE 1023
Query: 188 DSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERE 235
+ K + + E +L+ ++K + QE +++KRK E +
Sbjct: 1024 EEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSD 1071
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 72.6 bits (178), Expect = 5e-13
Identities = 37/240 (15%), Positives = 99/240 (41%), Gaps = 2/240 (0%)
Query: 6 RDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKER 65
++R ++ E E + + ++ + + ++K E E + R R + ++ E+
Sbjct: 870 KERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEIL 929
Query: 66 EEKRERAREKEREREKRDREREDRERE-RERERERRERDREREKRERERDRDKEKDRERK 124
E R E+E ++ E++ +++ + E + E + R+K + E+ K ++ +
Sbjct: 930 HEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKME 989
Query: 125 SRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKL 184
+ E K + + + +E + ++L++ + +L
Sbjct: 990 DDILIMEDQNNKLTK-ERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRL 1048
Query: 185 VEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGDANVEE 244
+++ ++E + + +LE E L E++ + + ++ E + KKEE + E
Sbjct: 1049 KKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDET 1108
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 71.8 bits (176), Expect = 1e-12
Identities = 38/236 (16%), Positives = 105/236 (44%), Gaps = 11/236 (4%)
Query: 4 SHRDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREK 63
+ + E E+ + R +++ E E+ E + ++E+E+ + ++++ + + D E+
Sbjct: 903 AETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEE 962
Query: 64 ---EREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKD 120
E E R++ + ++ + + ++ ED E + + ++R+ + +
Sbjct: 963 QLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAE 1022
Query: 121 RERKSRDREKRR-KVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDES 179
E K+++ K + K ES S+ + ++ + R + + +R E S + E
Sbjct: 1023 EEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQA- 1081
Query: 180 PREKLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERE 235
+ K + +EEEL+ +L++E ++ +++ +EL+ + + +
Sbjct: 1082 ------QIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQED 1131
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 1e-12
Identities = 33/225 (14%), Positives = 88/225 (39%), Gaps = 7/225 (3%)
Query: 11 EKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEKRE 70
E+E + + + + + ED ++++ ++R+ +R D E+ E
Sbjct: 966 EEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEE 1025
Query: 71 RAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRDREK 130
+A+ + + K + + E ++E + R+ + E+ KR+ E E + +
Sbjct: 1026 KAKNLTKLKNKHESMISELEVRLKKEEKSRQ-ELEKIKRKLE----GESSDLHEQIAELQ 1080
Query: 131 RRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVEDDSD 190
+ E K+ + + +D + + +L + + +E L + +
Sbjct: 1081 AQIAELKAQLAKKEEELQAALARLEDETSQ-KNNALKKIRELESHISD-LQEDLESEKAA 1138
Query: 191 KKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERE 235
+ + + ++ +L +E L E+E QEL+ + + +
Sbjct: 1139 RNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 71.0 bits (174), Expect = 2e-12
Identities = 43/260 (16%), Positives = 97/260 (37%), Gaps = 24/260 (9%)
Query: 1 MAHSHRDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDR---DRRRDRDR 57
A + R R K++ E+ + + +E + EK K + + + +
Sbjct: 908 YAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEE 967
Query: 58 DRDREKEREEKR----------ERAREKEREREKRDREREDRERE--------RERERER 99
+ R+K + EK + E + K +ER+ E E E +
Sbjct: 968 EAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKA 1027
Query: 100 RERDREREKRERERDRDKEK-DRERKSRD--REKRRKVESDDSDEDKDRDRKRRRRHDDD 156
+ + + K E + + +E KSR + +RK+E + SD + + + +
Sbjct: 1028 KNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELK 1087
Query: 157 HKERVRERSLSRSNRHRDENDESPREKLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRR 216
+ +E L + ++ L + + +E+LE E+ ++ +++R
Sbjct: 1088 AQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKR 1147
Query: 217 RRVQEWQELKRKKEESEREN 236
+E + LK + E++
Sbjct: 1148 DLSEELEALKTELEDTLDTT 1167
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 68.7 bits (168), Expect = 9e-12
Identities = 36/225 (16%), Positives = 92/225 (40%), Gaps = 12/225 (5%)
Query: 20 KSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEKRERAREKERER 79
K R E E +E + KE+++ + + EK +++ +A E E
Sbjct: 851 KVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQA-ETELYA 909
Query: 80 EKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRDREKRRKVESDDS 139
E + +++E E E + E+ E + + + ++ + + + ++E
Sbjct: 910 EAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLE---- 965
Query: 140 DEDKDRDRKRRRRHDDDHKERVRERSLS---RSNRHRDENDESPREKLVEDDSDKKEKKT 196
+E+ R + + + D K + E + N + + E++ + ++ E++
Sbjct: 966 EEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEE 1025
Query: 197 REEELEDEQRKLDEEMEKRRRRVQE----WQELKRKKEESERENR 237
+ + L + K + + + R+++ QEL++ K + E E+
Sbjct: 1026 KAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESS 1070
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 1e-08
Identities = 16/181 (8%), Positives = 70/181 (38%), Gaps = 4/181 (2%)
Query: 61 REKEREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKD 120
+ +++ E + ++ E +R +ER+++ K ++ ++
Sbjct: 834 VXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEE 893
Query: 121 RERKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESP 180
+ + ++ ++ + K++ + H+ R ++ +
Sbjct: 894 KNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKM 953
Query: 181 REKLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQE----LKRKKEESEREN 236
++++++ + +E++ ++L+ E+ D +++K + ++ L ++++ E
Sbjct: 954 QQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERV 1013
Query: 237 R 237
Sbjct: 1014 S 1014
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 1e-04
Identities = 25/177 (14%), Positives = 62/177 (35%), Gaps = 23/177 (12%)
Query: 59 RDREKEREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKE 118
+ R++ + + +D E +R +ER+++ +E ++ +E
Sbjct: 834 VXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEE 893
Query: 119 KDRERKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDE 178
K+ ++ E R K++ E L +E +E
Sbjct: 894 KNLLQEKLQAETEL------------YAEAEEMRVRLAAKKQELEEILHEMEARIEEEEE 941
Query: 179 SPREKLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERE 235
++ + EKK +++ + L+E++E+ Q+ Q K + ++
Sbjct: 942 RSQQL-------QAEKK----KMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKK 987
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 7e-04
Identities = 24/189 (12%), Positives = 65/189 (34%), Gaps = 17/189 (8%)
Query: 62 EKEREEKRERAREKEREREKRDREREDRERERERERE--------RRERDREREKRERER 113
E+ER+ K + + + R+ + +++ R +
Sbjct: 784 EEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHWPWMXLF 843
Query: 114 DRDKEKDRERKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHR 173
+ + + + + E + E + + + + H + E++L +
Sbjct: 844 FXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQA 903
Query: 174 DENDESPREKLVEDDSDKKEKKTREEELEDEQRKLDEE-------MEKRRRRVQEWQELK 226
+ E E +K+ EE L + + +++EE ++++ Q+ +L+
Sbjct: 904 ET--ELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLE 961
Query: 227 RKKEESERE 235
+ EE E
Sbjct: 962 EQLEEEEAA 970
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 | Back alignment and structure |
|---|
Score = 73.5 bits (179), Expect = 2e-13
Identities = 47/360 (13%), Positives = 110/360 (30%), Gaps = 21/360 (5%)
Query: 391 EKPLEDEDDDEFMKRVKKTKAEKLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYR 450
E + + + K+ E+ + + E Y
Sbjct: 158 ECLCRSDKEHWPKSLQLALDTTGYYRASELWDIREDNAKDVDSEMTDASEDCLEASMTYS 217
Query: 451 KQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGV 510
++ E + + + R Q + ++G++ +
Sbjct: 218 EEAEPDDNLSENLGSAAEGIGKPPPVYETKKAR--------SYQIELAQPAINGKNALIC 269
Query: 511 AKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVR 570
A TGSGKT +L H ++ P AG + +A + +Q + + + G
Sbjct: 270 APTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYS 326
Query: 571 CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF 630
+ G + + ++ ++I+V TP +++ G +T+L T ++ DE
Sbjct: 327 VQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED--GTLTSLSIFTLMIFDECHNTT 384
Query: 631 DMGFEPQITRIVQNIRPDRQTVLF-----SATFPRQVEILARKVLNKPVEIQVGGRSVVN 685
+ + + + L +A+ + + +
Sbjct: 385 GNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDI--- 441
Query: 686 KDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLH 745
+ I+ + E E RF+ E+ ++ F + L++ Y +L
Sbjct: 442 QAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLS 501
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 | Back alignment and structure |
|---|
Score = 55.4 bits (132), Expect = 1e-07
Identities = 36/178 (20%), Positives = 72/178 (40%), Gaps = 19/178 (10%)
Query: 697 ESDRFLRLLELLGEWYEKG---KILIFVHSQEKCDALFRDLLKH------------GYPC 741
E+ + L+ +L + Y + L+F ++ AL + + ++ G
Sbjct: 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGR 670
Query: 742 LSLHGAKDQTDRESTISDFKSNVCN-LLIATSVAARGLDVKELELVINFDAPNHYEDYVH 800
++ + FK++ N LLIATSVA G+D+ + LV+ ++ + +
Sbjct: 671 RDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQ 730
Query: 801 RVGRTGRAGRKGCAITFISEEDAKYSPDLVKALE-LSEQVVPDDLKALADSFMAKVNQ 857
GR GRA I S+ + + + E + + V K ++F K++
Sbjct: 731 VRGR-GRA-AGSKCILVTSKTEVVENEKCNRYKEEMMNKAVEKIQKWDEETFAKKIHN 786
|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
Score = 73.6 bits (181), Expect = 3e-13
Identities = 32/228 (14%), Positives = 86/228 (37%), Gaps = 6/228 (2%)
Query: 10 REKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEKR 69
+ + KS ++ + + + + RR + R+ +K + E R
Sbjct: 856 NKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAK-RELKKLKIEAR 914
Query: 70 ERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRDRE 129
R K+ ++ + + + E+ +E + + E + EK R R R
Sbjct: 915 SVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRM 974
Query: 130 KRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVEDDS 189
+ ++ + ++ + R + + ++ +++++ E ++ E ++
Sbjct: 975 SEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTL 1034
Query: 190 DKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENR 237
K EK+ + D+ +++ E MEK+ +E K+ + + E
Sbjct: 1035 LKTEKEELNRRIHDQAKEITETMEKKLV-----EETKQLELDLNDERL 1077
|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 2e-12
Identities = 32/212 (15%), Positives = 78/212 (36%), Gaps = 7/212 (3%)
Query: 10 REKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEKR 69
R H ++ ++ ++E K + R +R + E + +
Sbjct: 875 RGWLARVHYHRTLKAIVYLQCCYRRMM--AKRELKKLKIEARSVERYKKLHIGLENKIMQ 932
Query: 70 ERAREKEREREKRDREREDRERERERERERRE-RDREREKRERERDRDKEKDRERKSRDR 128
+ + E+ +E + + E E + R R E + +R ++
Sbjct: 933 LQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEE 992
Query: 129 EKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVEDD 188
+ + E + +K + ++ + ++ V E ++ + E +E R D
Sbjct: 993 IAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELK-EQNTLLKTEKEELNRRI---HD 1048
Query: 189 SDKKEKKTREEELEDEQRKLDEEMEKRRRRVQ 220
K+ +T E++L +E ++L+ ++ R R Q
Sbjct: 1049 QAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080
|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
Score = 69.0 bits (169), Expect = 7e-12
Identities = 31/245 (12%), Positives = 80/245 (32%), Gaps = 8/245 (3%)
Query: 6 RDRDREKEKEKHREKSRRSE-REQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKE 64
R + + R R + + +K R +
Sbjct: 834 RYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYL 893
Query: 65 REEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERK 124
+ R ++E ++ K + +R ++ E + +R+ E+ ++ K +
Sbjct: 894 QCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEY-KSLLEKMN 952
Query: 125 SRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKL 184
+ + + E SD + + ++ + +++ + + +
Sbjct: 953 NLEITYSTETEKLRSDVE-RLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIE 1011
Query: 185 VEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQE-----WQELKRKKEESERENRGD 239
D K E + EL+++ L E E+ RR+ + + +++K E ++ D
Sbjct: 1012 EWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELD 1071
Query: 240 ANVEE 244
N E
Sbjct: 1072 LNDER 1076
|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 4e-09
Identities = 31/209 (14%), Positives = 73/209 (34%), Gaps = 13/209 (6%)
Query: 49 RDRRRDRDRDRDRE-KEREEKRERAREKEREREKRDREREDRERERERERERRERDRERE 107
+ +R R R + ++ + R K + + ++ R R
Sbjct: 824 KFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHY 883
Query: 108 KRERERDRDKEKD-RERKSRDREKRRKVESDDSDEDK-------DRDRKRRRRHDDDHKE 159
R + + R ++ K+ K+E+ + K ++ + +R+ D+ +KE
Sbjct: 884 HRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKE 943
Query: 160 RVRE----RSLSRSNRHRDENDESPREKLVEDDSDKKEKKTREEELEDEQRKLDEEMEKR 215
+L + E S E+L + + K R L++E KL +E+ +
Sbjct: 944 YKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQT 1003
Query: 216 RRRVQEWQELKRKKEESERENRGDANVEE 244
+ + +E K + + + +
Sbjct: 1004 QTEKKTIEEWADKYKHETEQLVSELKEQN 1032
|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 4e-05
Identities = 27/178 (15%), Positives = 54/178 (30%), Gaps = 6/178 (3%)
Query: 61 REKEREEKRERAREK--EREREKRDREREDRERERERERERRERDRE-REKRERERDRDK 117
R +R RA + +R R+R R+ + R R K + K
Sbjct: 807 RCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHK 866
Query: 118 EKDRERKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDEND 177
++ R R + RR +E + + +RS +
Sbjct: 867 SIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMM---AKRELKKLKIEARSVERYKKLH 923
Query: 178 ESPREKLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERE 235
K+++ E+ + L ++ L+ +++ E R EE +
Sbjct: 924 IGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKN 981
|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 1e-04
Identities = 18/110 (16%), Positives = 40/110 (36%), Gaps = 2/110 (1%)
Query: 7 DRDREKEKEKHREKSRRSEREQSTDS-DEDKHDKEKEKDKHRDRDRRRDRDRDRDREKER 65
+R R E+E +R ++ ++ H + EK K + + + E
Sbjct: 970 ERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEK-KTIEEWADKYKHETEQLVSEL 1028
Query: 66 EEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDR 115
+E+ + ++ E +R ++ E ++ E + ER R
Sbjct: 1029 KEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLR 1078
|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 34/180 (18%), Positives = 62/180 (34%), Gaps = 27/180 (15%)
Query: 69 RERAREKERER-----EKRDREREDRERERERERERRERDREREKRERERDRDKEKDRER 123
R A R R +K R R+R + R+ + + R++ + RE
Sbjct: 807 RCYATFLRRTRAAIIIQKFQRMYVVRKRYQCM-RDATIALQALLRGYLVRNKYQMMLREH 865
Query: 124 KSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREK 183
KS +K R R + K V + R + E +K
Sbjct: 866 KSIIIQKHV------------RGWLARVHYHRTLKAIVYLQCCYRRMMAKRE-----LKK 908
Query: 184 LVEDDSDKKEKKTREEELEDE----QRKLDEEMEKRRRRVQEWQELKRKKEESERENRGD 239
L + + K LE++ QRK+DE+ ++ + +++ L+ + R D
Sbjct: 909 LKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSD 968
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 6e-13
Identities = 47/357 (13%), Positives = 94/357 (26%), Gaps = 84/357 (23%)
Query: 500 VIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSD 559
++ G + G+GKT F+ +L A L++APTR ++ ++
Sbjct: 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAE------CARRRLRT-LVLAPTRVVLSEMKEA 56
Query: 560 IRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPG---RMIDILCTSGGKITNLR 616
+ +G I + + T +
Sbjct: 57 FHGLDVKFHTQAFSAHGSGR-----------EVIDAMCHATLTYRML-------EPTRVV 98
Query: 617 RVTYLVMDE-----ADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFP---RQVEILARK 668
++MDE + G+ R + T+L +AT P + +
Sbjct: 99 NWEVIIMDEAHFLDPASIAARGWAAHRAR-----ANESATILMTATPPGTSDEFPHSNGE 153
Query: 669 VLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCD 728
+ + +I + + I +K F+ S +
Sbjct: 154 IEDVQTDIPSEPWNTGHDWILA----------------------DKRPTAWFLPSIRAAN 191
Query: 729 ALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGL--DVK----- 781
+ L K G + L+ + + K + ++AT +A G V+
Sbjct: 192 VMAASLRKAGKSVVVLNRKTFERE----YPTIKQKKPDFILATDIAEMGANLCVERVLDC 247
Query: 782 ELELVINFDAPNHY--------EDYVHRVGRTGRAGRK--GCAITFISEEDAKYSPD 828
R GR GR ++ E +
Sbjct: 248 RTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNA 304
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 | Back alignment and structure |
|---|
Score = 71.9 bits (175), Expect = 6e-13
Identities = 41/262 (15%), Positives = 93/262 (35%), Gaps = 13/262 (4%)
Query: 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP 548
K Q + ++G++ + A TGSGKT +L H ++ P AG + +A
Sbjct: 7 KARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLAT 63
Query: 549 TRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTS 608
+ +Q + + + G + G + + ++ ++I+V TP +++
Sbjct: 64 KVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED- 122
Query: 609 GGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLF-----SATFPRQVE 663
G +T+L T ++ DE + + + + L +A+
Sbjct: 123 -GTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNA 181
Query: 664 ILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHS 723
+ + + + + I+ + E E RF+ E+ ++ F
Sbjct: 182 KNIEETIEHICSLC---SYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAI 238
Query: 724 QEKCDALFRDLLKHGYPCLSLH 745
+ L++ Y +L
Sbjct: 239 ISNLMSETEALMRTIYSVDTLS 260
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 | Back alignment and structure |
|---|
Score = 61.1 bits (147), Expect = 1e-09
Identities = 31/155 (20%), Positives = 63/155 (40%), Gaps = 15/155 (9%)
Query: 693 EVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAK 748
P+ + + +L+ + + + L+F ++ AL + + ++ L G
Sbjct: 369 NENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRG 428
Query: 749 --------DQTDRESTISDFKSNVCN-LLIATSVAARGLDVKELELVINFDAPNHYEDYV 799
++ + FK++ N LLIATSVA G+D+ + LV+ ++ + +
Sbjct: 429 RRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMI 488
Query: 800 HRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALE 834
GR GRA I S+ + + + E
Sbjct: 489 QVRGR-GRA-AGSKCILVTSKTEVVENEKCNRYKE 521
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Length = 715 | Back alignment and structure |
|---|
Score = 71.7 bits (176), Expect = 8e-13
Identities = 58/327 (17%), Positives = 118/327 (36%), Gaps = 47/327 (14%)
Query: 463 PKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALP-VIMSGRDCIGVAKTGSGKTLAF 521
PI+ L S ++E I+K +K P Q +A+ ++ G + + TGSGKTL
Sbjct: 7 WMPIEDL---KLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIA 63
Query: 522 VLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVA 581
+ ++ + +G + + P R L + + + + +G + G
Sbjct: 64 EMGIISFLLK-------NGGKAIYVTPLRALTNEKYLTFKDWEL-IGFKVAMTSGDY--- 112
Query: 582 QQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDE------ADRMFDMG-- 633
+ +I++ T ++ D L + L V Y V+DE +R G
Sbjct: 113 DTDDAWLKNYDIIITTYEKL-DSLWRHRPEW--LNEVNYFVLDELHYLNDPER----GPV 165
Query: 634 FEPQITRIVQNIRPDRQTVLFSATFPRQVEI---LARKVLNK---PVEIQVG--GRSVVN 685
E R + R + SAT +I L + + PV + G
Sbjct: 166 VESVTIRAKR-----RNLLALSATISNYKQIAKWLGAEPVATNWRPVPLIEGVIYPERKK 220
Query: 686 KDITQLVEVRPESDRFL--RLLELLGEWYEKGK-ILIFVHSQEKCDALFRDLLKH-GYPC 741
K+ + + ++ + K +L+F +S++ ++ + + +
Sbjct: 221 KEYNVIFKDNTTKKVHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVS 280
Query: 742 LSLHGAKDQTDRESTISDFKSNVCNLL 768
L + + + I + S+ LL
Sbjct: 281 LDENALSEILKQLDDIEEGGSDEKELL 307
|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
Score = 71.8 bits (175), Expect = 9e-13
Identities = 28/218 (12%), Positives = 60/218 (27%), Gaps = 1/218 (0%)
Query: 3 HSHRDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDRE 62
D + + S D E + RD +R +
Sbjct: 607 EMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITT 666
Query: 63 KEREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRE 122
+E + ++ + + ER+ + E E+ R+E K E
Sbjct: 667 NSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAK-AE 725
Query: 123 RKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPRE 182
+SR R + E + + + R + E + S +
Sbjct: 726 AESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQ 785
Query: 183 KLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQ 220
+L ++ K ++ T + E + + +Q
Sbjct: 786 QLANVEAKKFKEMTEALGPGTIRDLAVAGPEMQVKLLQ 823
|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
Score = 61.4 bits (148), Expect = 1e-09
Identities = 20/141 (14%), Positives = 50/141 (35%)
Query: 1 MAHSHRDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRD 60
+S + + + +E R ER++ D E + +++ + +
Sbjct: 665 TTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKA 724
Query: 61 REKEREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKD 120
+ R E E + K + E E E ER ++ R+ E + + + K
Sbjct: 725 EAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKA 784
Query: 121 RERKSRDREKRRKVESDDSDE 141
++ + + +K +++
Sbjct: 785 QQLANVEAKKFKEMTEALGPG 805
|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
Score = 57.9 bits (139), Expect = 2e-08
Identities = 35/237 (14%), Positives = 70/237 (29%), Gaps = 35/237 (14%)
Query: 1 MAHSHRDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHR--DRDRRRDRDRD 58
H++ R + T + + ++ D + D
Sbjct: 588 FDDFHKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVD 647
Query: 59 RDREKEREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKE 118
+ + + A E ++ + E +R + R +R++ + E E
Sbjct: 648 QRTRDALQRSVQLAIEITTNSQEAAAKHE---AQRLEQEARGRLERQKILDQSEA----E 700
Query: 119 KDRERKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDE 178
K R+ VES + + SR+ R E +
Sbjct: 701 KARKELLELEAMSMAVES---------------------TGNAKAEAESRAEAARIEGEG 739
Query: 179 SPREKLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERE 235
S + ++ + E E E E+ K EME R Q E+ + ++ + E
Sbjct: 740 SVLQAKLK-----AQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLANVE 791
|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 2e-12
Identities = 22/203 (10%), Positives = 57/203 (28%), Gaps = 1/203 (0%)
Query: 5 HRDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKE 64
H++ + ++ K +E S S + +E D + E
Sbjct: 808 HKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAE 867
Query: 65 REEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERK 124
+E E +R+++ ++ ++ E + E + + +
Sbjct: 868 QEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKN 927
Query: 125 SRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKL 184
+ + S+ D + + + + ER + +S E
Sbjct: 928 LEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTER-KDTFFAQQWTGVKSSAETY 986
Query: 185 VEDDSDKKEKKTREEELEDEQRK 207
+ E+ + E+L
Sbjct: 987 KNTLLAELERLQKIEDLHHHHHH 1009
|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 2e-10
Identities = 17/207 (8%), Positives = 57/207 (27%), Gaps = 30/207 (14%)
Query: 49 RDRRRDRDRDRDREKEREEKRERAREKEREREKRD------------------------R 84
++ ++ + +E E + + + KR+ +
Sbjct: 809 KEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQ 868
Query: 85 EREDRERERERERERRERDREREKRERERDRDKEKDRERKSRDREKRRKVESDDSDEDKD 144
E + R + +++ ++ R ++ + + E + + +
Sbjct: 869 EHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNL 928
Query: 145 RDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVEDDSDKKEKKTREEELEDE 204
+ + L++ E+ D ++ + E
Sbjct: 929 EAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERK--DTFFAQQWTGVKSSAETY 986
Query: 205 QRKLDEEMEKRRRRVQEWQELKRKKEE 231
+ L E+E+ +Q+ ++L
Sbjct: 987 KNTLLAELER----LQKIEDLHHHHHH 1009
|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 8e-09
Identities = 17/237 (7%), Positives = 68/237 (28%), Gaps = 24/237 (10%)
Query: 62 EKEREEKRERA-------------REKEREREKRDREREDRER---ERERERERRERDR- 104
E+ RE++ + +++ R+ + + +E +
Sbjct: 755 EEAREQRLGSEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKT 814
Query: 105 EREKRERERDRDKEKDRERKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRER 164
E+ + +E + +++ R +R+ + + ++ +E
Sbjct: 815 EKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSA----LEKAEQEH 870
Query: 165 SLSRSNRHRDENDESPREKLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQE 224
+ + + + + + K E + + + + + + +++ +
Sbjct: 871 AEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEA 930
Query: 225 LKRKKEESERENRGD---ANVEEPKAGRNWTLDREDSDDEEVPQTGKSETDMDADEE 278
+ + E ++ D + + N + + D Q +
Sbjct: 931 FDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYK 987
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 | Back alignment and structure |
|---|
Score = 69.6 bits (169), Expect = 3e-12
Identities = 35/152 (23%), Positives = 59/152 (38%), Gaps = 5/152 (3%)
Query: 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP 548
KP Q + M G++ I A TG GKT +L H+K P G + A
Sbjct: 13 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFAN 69
Query: 549 TRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTS 608
+ +Q S K+ + G R + G + + ++ +I++ TP +++ L
Sbjct: 70 QIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL--K 127
Query: 609 GGKITNLRRVTYLVMDEADRMFDMGFEPQITR 640
G I +L T ++ DE I
Sbjct: 128 KGTIPSLSIFTLMIFDECHNTSKQHPYNMIMF 159
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 | Back alignment and structure |
|---|
Score = 59.2 bits (142), Expect = 6e-09
Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 18/142 (12%)
Query: 697 ESDRFLRLLELLGEWYE---KGKILIFVHSQEKCDALFRDLLKH------------GYPC 741
E+ + L +L E Y + ++FV ++ DAL + + G
Sbjct: 378 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGK 437
Query: 742 LSLHGAKDQTDRESTISDFKSN-VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVH 800
+ + ++ + FK++ N+LIATSVA G+D+ + LVI ++ + +
Sbjct: 438 TNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 497
Query: 801 RVGRTGRAGRKGCAITFISEED 822
GR R S
Sbjct: 498 TRGRGRA--RGSKCFLLTSNAG 517
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 | Back alignment and structure |
|---|
Score = 69.2 bits (168), Expect = 4e-12
Identities = 28/136 (20%), Positives = 55/136 (40%), Gaps = 5/136 (3%)
Query: 494 QAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553
Q + G++ I A TG GKT +L H+K P G + A +
Sbjct: 9 QLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---CGQKGKVVFFANQIPVY 65
Query: 554 QQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKIT 613
+Q + ++ + +G + G + + + + +I++ TP +++ L G I
Sbjct: 66 EQQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNN--GAIP 123
Query: 614 NLRRVTYLVMDEADRM 629
+L T ++ DE
Sbjct: 124 SLSVFTLMIFDECHNT 139
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 | Back alignment and structure |
|---|
Score = 61.4 bits (148), Expect = 1e-09
Identities = 35/151 (23%), Positives = 60/151 (39%), Gaps = 18/151 (11%)
Query: 690 QLVEVRPESDRFLRLLELLGEWYEKGK---ILIFVHSQEKCDALFRDLLKH----GYPCL 742
+ E+ + L +L E Y ++FV ++ DAL + + ++
Sbjct: 362 VSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPG 421
Query: 743 SLHG--------AKDQTDRESTISDFKSN-VCNLLIATSVAARGLDVKELELVINFDAPN 793
L G ++ + F+++ N+LIATSVA G+D+ E LVI ++
Sbjct: 422 ILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVG 481
Query: 794 HYEDYVHRVGRTGRAGRKGCAITFISEEDAK 824
+ + GR GRA R S D
Sbjct: 482 NVIKMIQTRGR-GRA-RDSKCFLLTSSADVI 510
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Length = 451 | Back alignment and structure |
|---|
Score = 65.3 bits (159), Expect = 5e-11
Identities = 56/341 (16%), Positives = 94/341 (27%), Gaps = 73/341 (21%)
Query: 492 PIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRE 551
P + R I G+GKT + ++R LI+APTR
Sbjct: 7 PDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVRE------ALLRRLRT-LILAPTRV 59
Query: 552 LVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGK 611
+ ++ +R + +R S + + T
Sbjct: 60 VAAEMEEALRG----LPIRYQTPAVKSDH-------TGREIVDLMCHA----TFTTRLLS 104
Query: 612 ITNLRRVTYLVMDEA-----DRMFDMGFEPQITRIVQNIRPDRQTVLFSATFP-RQVEIL 665
T + +VMDEA + G+ + + +AT P
Sbjct: 105 STRVPNYNLIVMDEAHFTDPCSVAARGYISTRVE-----MGEAAAIFMTATPPGSTDPFP 159
Query: 666 ARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQE 725
N P+E +E + + + + +GK + FV S +
Sbjct: 160 QS---NSPIED---------------IEREIPERSWNTGFDWITD--YQGKTVWFVPSIK 199
Query: 726 KCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGL--DVK-- 781
+ + L K G + L T+ T V + T ++ G
Sbjct: 200 AGNDIANCLRKSGKRVIQLSRKTFDTEYPKTKLTDWDFV----VTTDISEMGANFRAGRV 255
Query: 782 -----ELELVINFDAPNHYE-------DYVHRVGRTGRAGR 810
L+ VI D P R GR GR
Sbjct: 256 IDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGR 296
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 | Back alignment and structure |
|---|
Score = 66.1 bits (160), Expect = 6e-11
Identities = 36/264 (13%), Positives = 83/264 (31%), Gaps = 13/264 (4%)
Query: 391 EKPLEDEDDDEFMKRVKKTKAEKLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYR 450
E + + + K+ E+ + + E Y
Sbjct: 158 ECLCRSDKEHWPKSLQLALDTTGYYRASELWDIREDNAKDVDSEMTDASEDCLEASMTYS 217
Query: 451 KQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGV 510
++ E + + + R Q + ++G++ +
Sbjct: 218 EEAEPDDNLSENLGSAAEGIGKPPPVYETKKAR--------SYQIELAQPAINGKNALIC 269
Query: 511 AKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVR 570
A TGSGKT +L H ++ P AG + +A + +Q + + + G
Sbjct: 270 APTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYS 326
Query: 571 CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF 630
+ G + + ++ ++I+V TP +++ G +T+L T ++ DE
Sbjct: 327 VQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED--GTLTSLSIFTLMIFDECHNTT 384
Query: 631 DMGFEPQITRIVQNIRPDRQTVLF 654
+ + + + L
Sbjct: 385 GNHPYNVLMTRYLEQKFNSASQLP 408
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 | Back alignment and structure |
|---|
Score = 58.8 bits (141), Expect = 9e-09
Identities = 33/167 (19%), Positives = 65/167 (38%), Gaps = 18/167 (10%)
Query: 684 VNKDITQLVEVRPESDRFLRLLELLGEWYEKG---KILIFVHSQEKCDALFRDLLKH--- 737
+ I + E+ + L+ +L + Y + L+F ++ AL + + ++
Sbjct: 598 EPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPIL 657
Query: 738 ---------GYPCLSLHGAKDQTDRESTISDFKSNVCN-LLIATSVAARGLDVKELELVI 787
G ++ + FK++ N LLIATSVA G+D+ + LV+
Sbjct: 658 NYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVV 717
Query: 788 NFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALE 834
++ + + GR GRA I S+ + + + E
Sbjct: 718 LYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVENEKCNRYKE 762
|
| >2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 2e-09
Identities = 20/200 (10%), Positives = 55/200 (27%), Gaps = 3/200 (1%)
Query: 2 AHSHRDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDR 61
AH + + K + + T K + +
Sbjct: 799 AHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKA 858
Query: 62 EKEREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDR 121
E+E E +++++ ++ ++ E + + + K +
Sbjct: 859 EQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLK 918
Query: 122 ERKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPR 181
++ D E + +SD + ++ + R+ + +S
Sbjct: 919 NLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQW---TGVKSSA 975
Query: 182 EKLVEDDSDKKEKKTREEEL 201
E + E+ + E+L
Sbjct: 976 ETYKNTLLAELERLQKIEDL 995
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Length = 431 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 4e-09
Identities = 47/347 (13%), Positives = 93/347 (26%), Gaps = 86/347 (24%)
Query: 510 VAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGV 569
G+GKT + ++R +I+APTR + ++ + +
Sbjct: 8 DLHPGAGKTRRVLPQLVREA------VKKRLRT-VILAPTRVVASEM-------YEALRG 53
Query: 570 RCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEA--- 626
+ Y V + + + + + +MDEA
Sbjct: 54 EPI-RYMTPAVQSERT---GNEIVDFMCHS----TFTMKLLQGVRVPNYNLYIMDEAHFL 105
Query: 627 --DRMFDMGFEPQITRIVQNIRPDRQTVLFSATFP---RQVEILARKVLNKPVEIQVGGR 681
+ G+ D + +AT P ++++ I
Sbjct: 106 DPASVAARGYIETRVS-----MGDAGAIFMTATPPGTTEAFPPSNSPIIDEETRIPDKAW 160
Query: 682 SVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPC 741
+ + IT+ G+ + FVHS ++ + L K G
Sbjct: 161 NSGYEWITE----------------------FDGRTVWFVHSIKQGAEIGTCLQKAGKKV 198
Query: 742 LSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGL--DVKELELVINFDAPNHYEDYV 799
L L+ +++ S+ V I T ++ G VI D + +
Sbjct: 199 LYLNRKTFESEYPKCKSEKWDFV----ITTDISEMGANFKAD---RVI--DPRKTIKPIL 249
Query: 800 HRVG----------------RTGRAGRK--GCAITFISEEDAKYSPD 828
R GR GR + + +
Sbjct: 250 LDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYSGNVSSDNE 296
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 | Back alignment and structure |
|---|
Score = 59.3 bits (143), Expect = 6e-09
Identities = 37/235 (15%), Positives = 76/235 (32%), Gaps = 15/235 (6%)
Query: 698 SDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLL-KHGYPCLSLHGAKDQTDREST 756
R L+ L + K+L+ L + L + G H +R+
Sbjct: 488 DPRVEWLMGYLTSHRSQ-KVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRA 546
Query: 757 ISDFKSN--VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAG-RKGC 813
+ F +L+ + + + G + + ++ FD P + + R+GR R G
Sbjct: 547 AAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDI 606
Query: 814 AITFISEE---DAKYSPDLVKALELSEQVVPDDLKALADSFMAKVNQGLEQAHGTGYGGS 870
I E + + L+ E P + V L +
Sbjct: 607 QIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPT-----GRTIYDSVYNDLINYLASPDQTE 661
Query: 871 GFKFNEEEDEKRKAAKKAQAKEY--GFEEDKSDSDDEDEGIRKAGGDISQQDALA 923
GF + ++ A KAQ ++ E S+ ++ + + ++ + L
Sbjct: 662 GFDDLIKNCREQHEALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTNLI 716
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.1 bits (142), Expect = 8e-09
Identities = 99/614 (16%), Positives = 192/614 (31%), Gaps = 192/614 (31%)
Query: 381 DSDYGDLENDEKP-LEDEDDDEFMK---------------RVKKTKAEKLSIVDHSKIDY 424
+ D D+++ K L E+ D + K+ + + + + +I+Y
Sbjct: 32 NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY 91
Query: 425 QPFRKNFYIEVKEIARMTPEEVSAYRKQL--ELKIHGK-DVPKPIKTWHQTGLTSKIMET 481
+ E ++ + MT + R +L + ++ K +V + +
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIE-QRDRLYNDNQVFAKYNVSRL-----------QPYLK 139
Query: 482 IRKLNYE-KPMPIQAQALPVIMSGRDCIGVAKTGSGKT-LA-----------------F- 521
+R+ E +P V++ G GSGKT +A F
Sbjct: 140 LRQALLELRPAKN------VLIDG-------VLGSGKTWVALDVCLSYKVQCKMDFKIFW 186
Query: 522 -----------VLPM---LRHIKDQPPVAAGDGPVGLIMAPT------RELVQQ------ 555
VL M L + D + D + + R L++
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 556 --IHSDIR--KFAKVMGVRC--VPVYGGSGVAQQISELKRGTEIVVC------TPGRMID 603
+ +++ K + C + V +S T I + TP +
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT-THISLDHHSMTLTPDEVKS 305
Query: 604 ILCTS-GGKITNLRR------------VTYLVMDEADRM--FDMGFEPQITRIVQ----N 644
+L + +L R + + D + ++T I++
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 645 IRPDRQTVLFS--ATFPRQVEILARKVL----NKPVEIQVGGRSVVNKDITQ-LVEVRPE 697
+ P +F + FP I +L ++ V VVNK LVE +P+
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPT-ILLSLIWFDVIKSDV--MVVVNKLHKYSLVEKQPK 422
Query: 698 S------DRFLRLLELLGEWYEKGKILIFVHSQEKC---DALFRDLLKHGYPC--LSLH- 745
+L L L Y + ++ ++ K D L L Y + H
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD-QYFYSHIGHHL 481
Query: 746 GAKDQTDRESTIS----DF---KSNVCNLLIATSVAARGLD-VKELELVINFDAPNHYED 797
+ +R + DF + + + A + + L+ +++L+ Y+
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF---------YKP 532
Query: 798 YVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALE-----LSEQVVPD---DLKALAD 849
Y I + D KY LV A+ + E ++ DL +A
Sbjct: 533 Y-------------------ICDNDPKYE-RLVNAILDFLPKIEENLICSKYTDLLRIA- 571
Query: 850 SFMAKVNQGLEQAH 863
MA+ E+AH
Sbjct: 572 -LMAEDEAIFEEAH 584
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 3e-07
Identities = 79/598 (13%), Positives = 156/598 (26%), Gaps = 178/598 (29%)
Query: 3 HSHRDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRD-- 60
H H D E + +++ K S E + + D D + D + + D
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQ-------DMPKSILSKEEIDHI 54
Query: 61 -REKEREEKRERA----REKEREREKR---DRERED--------RERERERERERRERDR 104
K+ R K+ E ++ + R + + +R+ R
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 105 EREKRERERDRDKEKDRERKSRDREKRRKVESDDSDED----------KD-------RDR 147
+R++ + + + R + R+ + ++ K
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 148 KRRRRHDD---------DHKERVRERSLSRSNRHRDENDESPREKLVEDDSDKKEKKTRE 198
K + + D + L + D N S D K R
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS------RSDHSSNI-KLRI 227
Query: 199 EELEDEQRKLDEEMEKRR-----RRVQEWQELK------------RKKEESERENRGDAN 241
++ E R+L + VQ + R + +
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR--------FKQVTD 279
Query: 242 VEEPKAGRNWTLDRED---SDDEEVPQTGKSETDMDADEEPKPSENQVGDAMLVDSDGGS 298
+ +LD + DE K D + P+ E + +
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKY-LDCRPQDLPR--EVLTTNPRRL------ 330
Query: 299 AAPALQIGAAEDEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMDRKGDRRS 358
++ I + + + D + + +KL +E S E +KM
Sbjct: 331 ---SI-IAESIRDGLATWDNWKH----VNCDKLTTIIESSLNVLEPAEYRKM-------- 374
Query: 359 NGEQPKKSSNKSLGRIIPGEDSDSDYGDLE---NDEKPLEDEDD-DEFMKR---VKKTKA 411
L + P + L D + ++ K K+ K
Sbjct: 375 ---------FDRLS-VFP-PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 412 EKLSIVD---------------HSKI--DYQPFRKN---------------FYI--EVKE 437
+SI H I Y + +I +K
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483
Query: 438 IARMTPEEVSAYRKQ------LELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEK 489
I PE ++ +R LE KI W+ +G ++ ++ Y+
Sbjct: 484 IEH--PERMTLFRMVFLDFRFLEQKIRHDSTA-----WNASGSILNTLQQLKF--YKP 532
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* Length = 1054 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 9e-09
Identities = 53/290 (18%), Positives = 103/290 (35%), Gaps = 48/290 (16%)
Query: 510 VAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGV 569
A TG GKT +F L M + A G ++ PT LV Q IRK+A+ GV
Sbjct: 77 TAPTGVGKT-SFGLAMSLFL-------ALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGV 128
Query: 570 RCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGG----KITNLRRVTYLVMDE 625
+ + + + + R I+ T+ L ++ +D+
Sbjct: 129 GTENL-----IGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRELGHFDFIFVDD 183
Query: 626 AD----------RMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILA-RKVLNKP 673
D ++ +GF + ++ +AT + + R++LN
Sbjct: 184 VDAILKASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLN-- 241
Query: 674 VEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRD 733
+G + +++ + +LE LG G +I+ + E+ + ++ +
Sbjct: 242 --FDIGSSRITVRNVEDVAVNDESISTLSSILEKLG----TG-GIIYARTGEEAEEIY-E 293
Query: 734 LLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS----VAARGLD 779
LK+ + + ++ F + LI T+ RGLD
Sbjct: 294 SLKNKFRIGIVT-----ATKKGDYEKFVEGEIDHLIGTAHYYGTLVRGLD 338
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Length = 618 | Back alignment and structure |
|---|
Score = 56.1 bits (135), Expect = 5e-08
Identities = 56/343 (16%), Positives = 93/343 (27%), Gaps = 71/343 (20%)
Query: 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP 548
P + R I G+GKT + ++R LI+AP
Sbjct: 171 IGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREA------LKRRLRT-LILAP 223
Query: 549 TRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTS 608
TR + ++ +R Y V S+ + + L +S
Sbjct: 224 TRVVAAEMEEALRG--------LPIRYQTPAV---KSDHTGREIVDLMCHATFTTRLLSS 272
Query: 609 GGKITNLRRVTYLVMDE-----ADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVE 663
+ +VMDE + G+ + + +AT P
Sbjct: 273 TR----VPNYNLIVMDEAHFTDPCSVAARGYISTRVE-----MGEAAAIFMTATPP--GS 321
Query: 664 ILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHS 723
N P+E +E + + + + +GK + FV S
Sbjct: 322 TDPFPQSNSPIED---------------IEREIPERSWNTGFDWITD--YQGKTVWFVPS 364
Query: 724 QEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGL--DVK 781
+ + + L K G + L T+ T V T ++ G
Sbjct: 365 IKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKTKLTDWDFVV----TTDISEMGANFRAG 420
Query: 782 -------ELELVINFDAPNHYE-------DYVHRVGRTGRAGR 810
L+ VI D P R GR GR
Sbjct: 421 RVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGR 463
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 53.2 bits (127), Expect = 5e-08
Identities = 15/76 (19%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 60 DREKEREEKRERAREKERER-EKRDREREDRERERERERERRERD----REREKRERERD 114
DR + E + RE++R+R ++ D + RE+ +++ + R+ E+ E+ +
Sbjct: 78 DRLTQEPESIRKWREEQRKRLQELD-AASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKI 136
Query: 115 RDKEKDRE-RKSRDRE 129
++ D+ + D +
Sbjct: 137 NNRIADKAFYQQPDAD 152
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 1e-07
Identities = 15/78 (19%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 62 EKEREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDR 121
++ +E E R+ E+ KR +E D + + R + ++ E+ + + EK++
Sbjct: 78 DRLTQEP-ESIRKWREEQRKRLQEL-DAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK 135
Query: 122 ERKSRDREKRRKVESDDS 139
+R +K + D
Sbjct: 136 IN-NRIADKAFYQQPDAD 152
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 6e-07
Identities = 16/85 (18%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 32 SDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEKRERAREKEREREKRDREREDRER 91
+ D+ +E E R+ R+ R R +E + + ++ RE+ K+D E ++ +
Sbjct: 75 AQADRLTQEPES-------IRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQ 127
Query: 92 ERERERERRERDREREKRERERDRD 116
+ E+ + + ++ D D
Sbjct: 128 SEQVEKNKINNRIADKAFYQQPDAD 152
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 47.1 bits (111), Expect = 7e-06
Identities = 13/75 (17%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 74 EKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRDREKRRK 133
+ +R ++ + R+ RE +R+R +E + E+ RE+ + ++ ++ ++ ++ K
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK 135
Query: 134 VESDDSDED--KDRD 146
+ + +D+ + D
Sbjct: 136 INNRIADKAFYQQPD 150
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 46.3 bits (109), Expect = 1e-05
Identities = 15/84 (17%), Positives = 37/84 (44%), Gaps = 15/84 (17%)
Query: 159 ERVRERSLSRSNRHRDENDESPREKLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRR 218
E +R+ R+E + +E D K +E E ++ L+E +++ +
Sbjct: 85 ESIRKW--------REEQRKRLQEL------DAASKVMEQEWREKAKKDLEEWNQRQSEQ 130
Query: 219 VQEWQELKRKKEESERENRGDANV 242
V++ + R +++ + DA++
Sbjct: 131 VEKNKINNRIADKAFYQQP-DADI 153
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 46.3 bits (109), Expect = 1e-05
Identities = 14/83 (16%), Positives = 36/83 (43%), Gaps = 10/83 (12%)
Query: 83 DREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRDREKRRKVESDDSDED 142
DR ++ E R+ R E+ + ++ + +++ RE+ +D E+ + + E
Sbjct: 78 DRLTQEPESIRKW---REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQ----SEQ 130
Query: 143 KDRDRKRRRRHDDDHKERVRERS 165
++++ R D K ++
Sbjct: 131 VEKNKINNRIAD---KAFYQQPD 150
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 1e-04
Identities = 22/106 (20%), Positives = 43/106 (40%), Gaps = 30/106 (28%)
Query: 86 REDRER-ERERERERRERDREREKRERERDRDKEKDRERKSRDREKRRKVESDDSDEDKD 144
+ DR E E R+ RE E+ KR +E D + + REK +K + ++
Sbjct: 76 QADRLTQEPESIRKWRE---EQRKRLQELD---AASKVMEQEWREKAKK-------DLEE 122
Query: 145 RDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVEDDSD 190
++++ + E+ + +NR D+ + D+D
Sbjct: 123 WNQRQ-----SEQVEKNKI-----NNRIADK------AFYQQPDAD 152
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 1e-04
Identities = 14/88 (15%), Positives = 36/88 (40%), Gaps = 14/88 (15%)
Query: 4 SHRDRDREKEKEKHRE-KSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDRE 62
+ DR + E E R+ + + +R Q D+ ++E + +D + +
Sbjct: 75 AQADRLTQ-EPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLE---------EWN 124
Query: 63 KEREEKRERAREKEREREK---RDRERE 87
+ + E+ E+ + R +K + + +
Sbjct: 125 QRQSEQVEKNKINNRIADKAFYQQPDAD 152
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Length = 459 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 6e-08
Identities = 45/339 (13%), Positives = 84/339 (24%), Gaps = 69/339 (20%)
Query: 510 VAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGV 569
GSGKT + +++ A ++APTR + ++ + G+
Sbjct: 27 DLHPGSGKTRKILPQIIKD-------AIQQRLRTAVLAPTRVVAAEM------AEALRGL 73
Query: 570 RCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRM 629
+ E + + V L + VMDEA
Sbjct: 74 PV-----RYQTSAVQREHQGNEIVDVMCHA----TLTHRLMSPNRVPNYNLFVMDEAHFT 124
Query: 630 FDMGFEPQITRIVQNIRPDRQTVLFSATFP-RQVEILARK--VLNKPVEIQVGGRSVVNK 686
+ + + + +AT P + + EI S +
Sbjct: 125 DPASIAARGYIATKVELGEAAAIFMTATPPGTTDPFPDSNAPIHDLQDEIPDRAWSSGYE 184
Query: 687 DITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHG 746
IT+ GK + FV S + + + L + G + L+
Sbjct: 185 WITE----------------------YAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNR 222
Query: 747 AKDQTDRESTISDFKSNVCNLLIATSVAARGL--DVK-------ELELVINFDAPNHYE- 796
T+ + V T ++ G ++ I +
Sbjct: 223 KSYDTEYPKCKNGDWDFVI----TTDISEMGANFGASRVIDCRKSVKPTILEEGEGRVIL 278
Query: 797 ------DYVHRVGRTGRAGRK--GCAITFISEEDAKYSP 827
R GR GR +
Sbjct: 279 GNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGATSEDD 317
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Length = 510 | Back alignment and structure |
|---|
Score = 54.5 bits (130), Expect = 1e-07
Identities = 45/338 (13%), Positives = 102/338 (30%), Gaps = 28/338 (8%)
Query: 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP 548
+P Q A+ + R I T +G++L L ++++ LI+ P
Sbjct: 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKI-------LIIVP 165
Query: 549 TRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM------- 601
T L Q+ D + + GG+ + T +
Sbjct: 166 TTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDKYKNDAPVVVGTWQTVVKQPKEWFSQ 225
Query: 602 IDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI-----------RPDRQ 650
++ + + ++ ++ + MF G + NI +P
Sbjct: 226 FGMMMNDECHLATGKSISSIISGLNNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTT 285
Query: 651 TVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGE 710
+ L +++I + + ++I + + + +L L +
Sbjct: 286 SKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQ 345
Query: 711 WYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIA 770
+ A+F + + G D R + ++ +++A
Sbjct: 346 K--DENAFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVA 403
Query: 771 T-SVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGR 807
+ V + G+ VK L V+ + +GR R
Sbjct: 404 SYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLR 441
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 2e-07
Identities = 60/356 (16%), Positives = 103/356 (28%), Gaps = 94/356 (26%)
Query: 492 PIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRE 551
Q +AL + + V TGSGKT + + + P LI+ PT
Sbjct: 96 DYQEKALERWLVDKRGCIVLPTGSGKTHVAMA-AINELS---------TPT-LIVVPTLA 144
Query: 552 LVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGK 611
L +Q + F G V + G +K + V T D + K
Sbjct: 145 LAEQWKERLGIF----GEEYVGEFSG--------RIKELKPLTVST----YDSAYVNAEK 188
Query: 612 ITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR------PDR----QTVLFSA----T 657
+ N R L+ DE + + + R +R +L
Sbjct: 189 LGN--RFMLLIFDEVHHLPAESYVQIAQMSIAPFRLGLTATFEREDGRHEILKEVVGGKV 246
Query: 658 FPRQVEILARKVLNKPVEIQV--------------------------GGRSVVNKDITQL 691
F + LA K L K ++ G +D ++
Sbjct: 247 FELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKI 306
Query: 692 VEVRPESDRFLRLLELLGEWYE-----KGKI---------------LIFVHSQEKCDALF 731
V +R L E K KI +IF E +
Sbjct: 307 VMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRIS 366
Query: 732 RDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVI 787
+ L + +RE + F++ ++++ V G+DV + + +
Sbjct: 367 KVFLIPAI-----THRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGV 417
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427 | Back alignment and structure |
|---|
Score = 52.1 bits (124), Expect = 7e-07
Identities = 27/148 (18%), Positives = 65/148 (43%), Gaps = 1/148 (0%)
Query: 3 HSHRDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDRE 62
+ + RE+ +H E RR + E+ D D K + + R + +E
Sbjct: 280 RVNMEDLREQTHTRHYELYRRCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKE 339
Query: 63 KEREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRE 122
+E + + R KE+E E ++ E+E E+ ++ ++ ++ E +++ D + ++
Sbjct: 340 EEMRQMFVQ-RVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQ 398
Query: 123 RKSRDREKRRKVESDDSDEDKDRDRKRR 150
RK+ + + + RD++++
Sbjct: 399 RKTAAELLQSQGSQAGGSQTLKRDKEKK 426
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Length = 673 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 3e-06
Identities = 47/360 (13%), Positives = 92/360 (25%), Gaps = 79/360 (21%)
Query: 494 QAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553
+A ++ + + G+GKT + +++ ++APTR +
Sbjct: 231 EAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDA------IQKRLRT-AVLAPTRVVA 283
Query: 554 QQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKIT 613
++ +R + VR + + V + L +
Sbjct: 284 AEMAEALRG----LPVRYLTPAVQREH-------SGNEIVDVMCHATLTHRLMSP----L 328
Query: 614 NLRRVTYLVMDE-----ADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFP-RQVEILAR 667
+ VMDE + G+ + + +AT P
Sbjct: 329 RVPNYNLFVMDEAHFTDPASIAARGYIATRVE-----AGEAAAIFMTATPPGTSDPFPDT 383
Query: 668 K--VLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQE 725
V + EI S + IT GK + FV S +
Sbjct: 384 NSPVHDVSSEIPDRAWSSGFEWITD----------------------YAGKTVWFVASVK 421
Query: 726 KCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGL--DVK-- 781
+ + + L + G + L+ T+ + V T ++ G
Sbjct: 422 MSNEIAQCLQRAGKRVIQLNRKSYDTEYPKCKNGDWDFVI----TTDISEMGANFGASRV 477
Query: 782 -----ELELVINFDAPNHYEDYVH-------RVGRTGRAGRK--GCAITFISEEDAKYSP 827
++ I + V R GR GR +
Sbjct: 478 IDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDD 537
|
| >2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2 PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D* 2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D* 3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D Length = 1524 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 7e-06
Identities = 24/224 (10%), Positives = 65/224 (29%), Gaps = 5/224 (2%)
Query: 8 RDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREE 67
R +++ + + + + K R R+ R + E+E E
Sbjct: 271 VLRREDEPVATYFLPVGMTPLVVHGEIVEKGQPLAEAKGLLRMPRQVRAAQVEAEEEGET 330
Query: 68 KRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRD 127
E K R + D+ + E + E + +
Sbjct: 331 VYLTL-FLEWTEPKDYRVQPHMNVVVPEGARVEAGDKIVAAIDPEEEVIAEAEGVVHLHE 389
Query: 128 REKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVED 187
V++ + D + R + + + +S+ + + R +
Sbjct: 390 PASILVVKARVYPFEDDVEVSTGDRVAP--GDVLADGGKVKSDVYGRVEVDLVRNVVRVV 447
Query: 188 DSDKKEKKTREEELED--EQRKLDEEMEKRRRRVQEWQELKRKK 229
+S + + E ++ ++ L+ ++ ++ +R K
Sbjct: 448 ESYDIDARMGAEAIQQLLKELDLEALEKELLEEMKHPSRARRAK 491
|
| >2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2 PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D* 2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D* 3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D Length = 1524 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 4e-05
Identities = 32/310 (10%), Positives = 72/310 (23%), Gaps = 18/310 (5%)
Query: 27 EQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEKRERAREKEREREKRDRER 86
+ + + +++R+ + + K K +E R
Sbjct: 139 GAILNGVPVEKRQLLTDEEYRELRYGKQETYPLPPGVDALVKDGEEVVKGQELAPGVVSR 198
Query: 87 EDRERERERERERRERDREREKRERERDRDKEKDRERKSRDRE--KRRKVESDDSDE--- 141
D R R ++E+ R + + E E
Sbjct: 199 LDGVALYRFPRRVRVEYVKKERAGL-RLPLAAWVEKEAYKPGEILAELPEPYLFRAEEEG 257
Query: 142 -----DKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVEDDSDKKEKKT 196
+ + R +D+ E E + + ++
Sbjct: 258 VVELKELEEGAFLVLRREDEPVATYFLPVGMTPLVVHGEIVEKGQPLAEAKGLLRMPRQV 317
Query: 197 REEELEDEQRK-------LDEEMEKRRRRVQEWQELKRKKEESERENRGDANVEEPKAGR 249
R ++E E+ E E + RVQ + + +P+
Sbjct: 318 RAAQVEAEEEGETVYLTLFLEWTEPKDYRVQPHMNVVVPEGARVEAGDKIVAAIDPEEEV 377
Query: 250 NWTLDREDSDDEEVPQTGKSETDMDADEEPKPSENQVGDAMLVDSDGGSAAPALQIGAAE 309
+ E +++ + S V +DGG +
Sbjct: 378 IAEAEGVVHLHEPASILVVKARVYPFEDDVEVSTGDRVAPGDVLADGGKVKSDVYGRVEV 437
Query: 310 DEDIDPLDAF 319
D + +
Sbjct: 438 DLVRNVVRVV 447
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 Length = 430 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 15/146 (10%), Positives = 48/146 (32%), Gaps = 1/146 (0%)
Query: 70 ERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRDRE 129
+ K+ + + + + E+ + E R +E + +
Sbjct: 124 KTVSYKDYSIFLENENILIKAKNFLVFQGDVEQIAAQSPVELSR-MFEEVSGSIQYKKEY 182
Query: 130 KRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVEDDS 189
+ K + + + K RRR + K R + + ++
Sbjct: 183 EELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEAEGRFEVINN 242
Query: 190 DKKEKKTREEELEDEQRKLDEEMEKR 215
+ ++ K E+++ ++ K+ ++ ++
Sbjct: 243 ETEQLKAEEKKILNQFLKIKKKRKEL 268
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 | Back alignment and structure |
|---|
Score = 47.6 bits (112), Expect = 2e-05
Identities = 28/228 (12%), Positives = 82/228 (35%), Gaps = 7/228 (3%)
Query: 9 DREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEK 68
++ + HR+ R + S +D +++ + +R D +
Sbjct: 349 SLQELLDLHRDSEREAIEVFIRSSFKDVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCS 408
Query: 69 RERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRDR 128
E+ + ++ + +++ E + E+ + + +
Sbjct: 409 GLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSK 468
Query: 129 EKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVEDD 188
E + D+ K + + K + S + + +N++ +K +
Sbjct: 469 ES---MTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQK---ER 522
Query: 189 SDKKEKKTREEELEDEQRKLDEEMEKRR-RRVQEWQELKRKKEESERE 235
S ++ K E++E+++ +L +E E+ ++QE ++L ++ + E
Sbjct: 523 SYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESR 570
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 | Back alignment and structure |
|---|
Score = 45.7 bits (107), Expect = 7e-05
Identities = 27/235 (11%), Positives = 83/235 (35%), Gaps = 11/235 (4%)
Query: 11 EKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEKRE 70
++ S + KE + RD ++++ ++ +
Sbjct: 354 LDLHRDSEREAIEVFIRSSFKDVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQV 413
Query: 71 RAREKEREREKRDREREDRERERERERERRERDREREKRER-ERDRDKEKDRERKSRDRE 129
E E + + R ++ + ++ E R+ + + + + K +
Sbjct: 414 IFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTD 473
Query: 130 KRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVE-DD 188
+ + ++++K+ + +R + ++ ++ + ++ + S +E L + +
Sbjct: 474 AILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTE 533
Query: 189 SDKKEKKTREEELED-------EQRKLDEE--MEKRRRRVQEWQELKRKKEESER 234
+ ++ +E E EQ +L +E ++ R E Q+L+ K +
Sbjct: 534 KMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRRRKA 588
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 | Back alignment and structure |
|---|
Score = 45.3 bits (106), Expect = 9e-05
Identities = 34/204 (16%), Positives = 67/204 (32%), Gaps = 21/204 (10%)
Query: 8 RDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREE 67
DR + E + S + +K + + + + E+ +
Sbjct: 404 SDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQT 463
Query: 68 KRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRD 127
+ + D+ ++E+E E ER + E + K E R E+ E+K R
Sbjct: 464 YLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERS 523
Query: 128 REKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVED 187
++ K E + DR + + +ER L + E
Sbjct: 524 YQEHLK----QLTEKMENDRVQLLKE----QERTLALKLQEQEQLLKEGF---------- 565
Query: 188 DSDKKEKKTREEELEDEQRKLDEE 211
+KE + + E++D Q K+
Sbjct: 566 ---QKESRIMKNEIQDLQTKMRRR 586
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 | Back alignment and structure |
|---|
Score = 42.6 bits (99), Expect = 6e-04
Identities = 22/200 (11%), Positives = 64/200 (32%), Gaps = 11/200 (5%)
Query: 38 DKEKEKDKHRDRDRRRDRDRDRDREKEREEKRERAREKEREREKRDREREDRERERERER 97
+ + ++E + +K + K+++E +
Sbjct: 354 LDLHRDSEREAIEVFIRSSFKDVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQV 413
Query: 98 ERRERDREREKRERERDRDKEKDRERKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDH 157
+ E + + ++ ++K + RK + +
Sbjct: 414 IFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEP-----------RKGIQAEEILQ 462
Query: 158 KERVRERSLSRSNRHRDENDESPREKLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRR 217
+ S++ + D+ +++ + + + + L + QRK ++ ME++ R
Sbjct: 463 TYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKER 522
Query: 218 RVQEWQELKRKKEESERENR 237
QE + +K E++R
Sbjct: 523 SYQEHLKQLTEKMENDRVQL 542
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 418 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 5e-05
Identities = 21/150 (14%), Positives = 69/150 (46%), Gaps = 4/150 (2%)
Query: 1 MAHSHRDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRD 60
+ +H ++ H E R + T + D + + + + + + +R
Sbjct: 270 LIRTHMQDLKDVTNNVHYENYRSRKLAAVTYNGVDNN--KNKGQLTKSPLAQMEEERREH 327
Query: 61 REKEREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKD 120
K ++ + E + E + +++ ++ +D E E +R E+ +++ E + +E ++ ++ +
Sbjct: 328 VAKMKKMEMEMEQVFEMKVKEKVQKLKDSEAELQRRHEQMKKNLEAQHKE-LEEKRRQFE 386
Query: 121 RERKSRDREKRRKVESDDSDE-DKDRDRKR 149
E+ + + ++R + + S +K++ + +
Sbjct: 387 DEKANWEAQQRILEQQNSSRTLEKNKKKGK 416
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 20/139 (14%), Positives = 46/139 (33%), Gaps = 5/139 (3%)
Query: 18 REKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDR--DREKEREEKRERAREK 75
+ + + DE + +K + ++ ++R +R +E+ + + +
Sbjct: 144 KPSEKLETVAKLLGIDEFEKCYQKMGEIVKEYEKRLERIEGELNYKEESLKARLKEMSNL 203
Query: 76 EREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRDREKRRKVE 135
E+E+EK + E ++ R + RE+ ++ E S VE
Sbjct: 204 EKEKEKLTKFVEYLDKVRRIFGRNGF---QAYLREKYVPLIQKYLNEAFSEFDLPYSFVE 260
Query: 136 SDDSDEDKDRDRKRRRRHD 154
E + D
Sbjct: 261 LTKDFEVRVHAPNGVLTID 279
|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 35/204 (17%), Positives = 72/204 (35%), Gaps = 14/204 (6%)
Query: 62 EKEREEKRERAREKEREREKRDREREDRERERER---ERERRERDREREKRERERDRDKE 118
E E + E A +E E + + + R + + + + D +
Sbjct: 9 ESEDDYGSEEALSEENVHEASANPQPEDFHGIDIVINHRLKTSLEEGKVLEKTVPDLNNC 68
Query: 119 KDRER---KSRDREKRRKV-ESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRD 174
K+ K D E+ +S ++ K+ + E R + +
Sbjct: 69 KENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYC----KQFIIEDQQVRLDPYVT 124
Query: 175 ENDESPREKLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESER 234
D + E D+ E+ E + D QR E+ + + + +W+ L +E+
Sbjct: 125 AEDIEIMDMERERRLDEFEEFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNY--DEATW 182
Query: 235 ENRGDANVEEPKAGRNWTLDREDS 258
EN D P+ +++ +RE+S
Sbjct: 183 ENATDIVKLAPEQVKHF-QNRENS 205
|
| >2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Length = 189 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 2e-04
Identities = 35/188 (18%), Positives = 79/188 (42%), Gaps = 5/188 (2%)
Query: 38 DKEKEKDKHRDRDRRRDRDRDRDREKEREEKRERAREKEREREKRDREREDRERERERER 97
KE+ + + + ++ E E +E +RE E E E + + E R R+ + +
Sbjct: 6 SSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADN 65
Query: 98 ERRERDREREKRERERDRDKEKDRERKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDH 157
+R + + E +E+ + + ++ + + + + R+ ++ DD
Sbjct: 66 QRLKYEVE-ALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQAN---DDL 121
Query: 158 KERVRERSLSRSNRHRDENDESPREKLVEDDSDKKEKKTREEE-LEDEQRKLDEEMEKRR 216
+ R +S + + N R +E + D+KE + L+DE R L +E+ R
Sbjct: 122 ERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQELAVRE 181
Query: 217 RRVQEWQE 224
R+ + ++
Sbjct: 182 RQQEVTRK 189
|
| >4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene} Length = 240 | Back alignment and structure |
|---|
Score = 41.9 bits (97), Expect = 5e-04
Identities = 31/215 (14%), Positives = 83/215 (38%), Gaps = 3/215 (1%)
Query: 7 DRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKERE 66
D E R + E Q ++ K +E + + +R+ +R+ + E
Sbjct: 27 DGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQRAIEE 86
Query: 67 EKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSR 126
KE+ +K + +E+RE ER +E++K E + ++ +
Sbjct: 87 NNNWIKMAKEKLAQKMESNKENREA---HFAAMLERLQEKDKHAEEVRQRAIEENNNWIK 143
Query: 127 DREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVE 186
+++ + + + E++ +H + +E RE + + + + +
Sbjct: 144 MAKEKLAQKMESNKENRKYQEAELLKHLAEKREHEREVIQRAIEENNNWIKMAKEKLAQK 203
Query: 187 DDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQE 221
+S+K+ ++ + + ++ D+ E+ R+ +
Sbjct: 204 MESNKENREAHFAAMLERLQEKDKHAEEVRKNKEL 238
|
| >2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704 | Back alignment and structure |
|---|
Score = 42.6 bits (99), Expect = 7e-04
Identities = 29/231 (12%), Positives = 69/231 (29%), Gaps = 20/231 (8%)
Query: 10 REKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRD------RDRRRDRDRDRDREK 63
E+E + +++ ER Q T S+E E R + + ++ +
Sbjct: 465 DEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRD 524
Query: 64 EREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRER 123
+ E + + + E + + + K+ERE + K
Sbjct: 525 TIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNF 584
Query: 124 KSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREK 183
+ + +E+ + R + +V+E + + E +
Sbjct: 585 DMTSKFLTALAQDGVINEEALSVTELDRVY-GGLTTKVQE------SLKKQEGLLKNIQV 637
Query: 184 LVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESER 234
++ S K+ E+ + L + + EL +E +
Sbjct: 638 SHQEFSKMKQSNNEANLREEVLKNLATAYDN-------FVELVANLKEGTK 681
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1112 | |||
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 100.0 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 100.0 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 100.0 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 100.0 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 100.0 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 100.0 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 100.0 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 100.0 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 100.0 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 100.0 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 100.0 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 100.0 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 100.0 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 100.0 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 100.0 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 100.0 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 100.0 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 100.0 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 100.0 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 100.0 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 100.0 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 100.0 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 100.0 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 100.0 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 100.0 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 100.0 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 100.0 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 100.0 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 100.0 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 100.0 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 100.0 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 100.0 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 100.0 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 100.0 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 100.0 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 100.0 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 100.0 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 100.0 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 100.0 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 100.0 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 100.0 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 100.0 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 100.0 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 100.0 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 100.0 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 100.0 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 100.0 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 100.0 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 100.0 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 100.0 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 100.0 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 100.0 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 100.0 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 100.0 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 100.0 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 100.0 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 100.0 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 100.0 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 100.0 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 100.0 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 100.0 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 100.0 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 100.0 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 100.0 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 100.0 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 100.0 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 99.98 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 99.97 | |
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 99.97 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 99.97 | |
| 2ipc_A | 997 | Preprotein translocase SECA subunit; nucleotide bi | 99.96 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 99.96 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 99.95 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 99.95 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 99.94 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 99.92 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 99.92 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 99.91 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 99.91 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 99.91 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.89 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 99.79 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 99.87 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 99.86 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 99.85 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 99.85 | |
| 1rif_A | 282 | DAR protein, DNA helicase UVSW; bacteriophage, REC | 99.82 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 99.76 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 99.72 | |
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 99.7 | |
| 1w36_D | 608 | RECD, exodeoxyribonuclease V alpha chain; recombin | 98.74 | |
| 4b3f_X | 646 | DNA-binding protein smubp-2; hydrolase, helicase; | 98.09 | |
| 2xzl_A | 802 | ATP-dependent helicase NAM7; hydrolase-RNA complex | 98.06 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 98.01 | |
| 3lfu_A | 647 | DNA helicase II; SF1 helicase, ATP-binding, DNA da | 97.97 | |
| 2wjy_A | 800 | Regulator of nonsense transcripts 1; nonsense medi | 97.94 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 97.86 | |
| 2gk6_A | 624 | Regulator of nonsense transcripts 1; UPF1, helicas | 97.8 | |
| 1k1g_A | 131 | SF1-BO isoform; splicing, branch point sequence, p | 97.71 | |
| 2yqr_A | 119 | KIAA0907 protein; structure genomics, KH domain, s | 97.63 | |
| 3hgt_A | 328 | HDA1 complex subunit 3; RECA-like domain, SWI2/SNF | 97.58 | |
| 2o0j_A | 385 | Terminase, DNA packaging protein GP17; nucleotide- | 97.14 | |
| 1uaa_A | 673 | REP helicase, protein (ATP-dependent DNA helicase | 97.02 | |
| 2bl5_A | 140 | MGC83862 protein, quaking protein; STAR proteins, | 96.53 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 96.41 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 96.35 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 96.34 | |
| 3cpe_A | 592 | Terminase, DNA packaging protein GP17; large termi | 96.32 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 95.97 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 95.9 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 95.89 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 95.53 | |
| 3vkw_A | 446 | Replicase large subunit; alpha/beta domain, helica | 95.39 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 95.2 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 95.09 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 95.08 | |
| 3e2i_A | 219 | Thymidine kinase; Zn-binding, ATP-binding, DNA syn | 94.94 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 94.89 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 94.86 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 94.83 | |
| 1w4r_A | 195 | Thymidine kinase; type II, human, cytosolic, phosp | 94.83 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 94.71 | |
| 2zpa_A | 671 | Uncharacterized protein YPFI; RNA modification enz | 94.63 | |
| 3u4q_A | 1232 | ATP-dependent helicase/nuclease subunit A; helicas | 94.5 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 94.43 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 94.41 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 94.17 | |
| 1g5t_A | 196 | COB(I)alamin adenosyltransferase; P-loop protein, | 94.1 | |
| 2opv_A | 85 | KHSRP protein; KH domain, RNA binding protein, KSR | 94.09 | |
| 1pjr_A | 724 | PCRA; DNA repair, DNA replication, SOS response, h | 93.94 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 93.86 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 93.69 | |
| 1ec6_A | 87 | RNA-binding protein NOVA-2; KH domain, alpha-beta | 93.67 | |
| 2p2r_A | 76 | Poly(RC)-binding protein 2; protein-DNA complex, R | 93.53 | |
| 1dtj_A | 76 | RNA-binding neurooncological ventral antigen 2; KH | 93.44 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 93.3 | |
| 1zzk_A | 82 | Heterogeneous nuclear ribonucleoprotein K; KH domi | 93.29 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 93.28 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 93.24 | |
| 2cte_A | 94 | Vigilin; K homology type I domain, RNA-binding, ce | 93.2 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 93.08 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 92.85 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 92.8 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 92.76 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 92.73 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 92.39 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 92.3 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 92.28 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 92.22 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 92.08 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 92.03 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 92.02 | |
| 2hh2_A | 107 | KH-type splicing regulatory protein; KH-RNA bindin | 91.95 | |
| 1j5k_A | 89 | Heterogeneous nuclear ribonucleoprotein K; single- | 91.95 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 91.94 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 91.82 | |
| 1x4n_A | 92 | FAR upstream element binding protein 1; KH domain, | 91.77 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 91.48 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 91.29 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 91.25 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 91.19 | |
| 2hh3_A | 106 | KH-type splicing regulatory protein; KH-RNA bindin | 91.06 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 90.45 | |
| 1x4m_A | 94 | FAR upstream element binding protein 1; KH domain, | 90.42 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 90.25 | |
| 2axy_A | 73 | Poly(RC)-binding protein 2; protein-DNA complex, D | 90.15 | |
| 1we8_A | 104 | Tudor and KH domain containing protein; structural | 90.1 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 90.0 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 90.0 | |
| 2ctl_A | 97 | Vigilin; K homology type I domain, RNA-binding, ce | 89.94 | |
| 2ctj_A | 95 | Vigilin; K homology type I domain, RNA-binding, ce | 89.89 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 89.85 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 89.81 | |
| 1wvn_A | 82 | Poly(RC)-binding protein 1; KH domain, RNA binding | 89.45 | |
| 1vig_A | 71 | Vigilin; RNA-binding protein, ribonucleoprotein; N | 89.31 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 89.28 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 89.24 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 89.18 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 89.07 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 89.01 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 88.87 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 88.71 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 88.63 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 88.3 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 88.08 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 88.08 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 88.01 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 88.0 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 87.79 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 87.54 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 87.48 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 87.16 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 87.13 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 87.11 | |
| 2ctm_A | 95 | Vigilin; K homology type I domain, RNA-binding, ce | 86.96 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 86.6 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 86.59 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 86.55 | |
| 2ctk_A | 104 | Vigilin; K homology type I domain, RNA-binding, ce | 86.5 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 86.43 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 86.4 | |
| 2jzx_A | 160 | Poly(RC)-binding protein 2; PCBP2, KH domains, RNA | 86.33 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 86.32 | |
| 1hqc_A | 324 | RUVB; extended AAA-ATPase domain, complex with nuc | 86.29 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 86.15 | |
| 2zan_A | 444 | Vacuolar protein sorting-associating protein 4B; S | 86.12 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 85.77 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 85.56 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 85.42 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 85.27 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 85.23 | |
| 2gno_A | 305 | DNA polymerase III, gamma subunit-related protein; | 85.2 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 85.18 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 84.87 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 84.63 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 84.43 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 84.31 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 84.25 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 84.17 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 84.11 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 84.09 | |
| 1sxj_A | 516 | Activator 1 95 kDa subunit; clamp loader, processi | 83.99 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 83.54 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 83.49 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 83.38 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 83.25 | |
| 3krm_A | 163 | Insulin-like growth factor 2 mRNA-binding protein | 83.17 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 83.14 | |
| 3hjh_A | 483 | Transcription-repair-coupling factor; MFD, mutatio | 82.88 | |
| 1w5s_A | 412 | Origin recognition complex subunit 2 ORC2; replica | 82.56 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 82.27 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 82.21 | |
| 2dgr_A | 83 | Ring finger and KH domain-containing protein 1; st | 81.97 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 81.24 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 81.16 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 81.08 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 81.02 | |
| 2fna_A | 357 | Conserved hypothetical protein; structural genomic | 80.92 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 80.74 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 80.6 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 80.32 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 80.2 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 80.16 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 80.16 |
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-64 Score=598.62 Aligned_cols=389 Identities=39% Similarity=0.658 Sum_probs=361.3
Q ss_pred cCceeccCCCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcC
Q 001261 453 LELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQ 532 (1112)
Q Consensus 453 ~~~~~~~~~~p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~ 532 (1112)
..+.+.|.++|.|+.+|.+++|++.+++.|..+||..|||+|.++||.++.|+|+|++|+||||||++|++|++.++...
T Consensus 42 ~~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~ 121 (434)
T 2db3_A 42 IPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLED 121 (434)
T ss_dssp SCEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHS
T ss_pred ceeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhc
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcc
Q 001261 533 PPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKI 612 (1112)
Q Consensus 533 ~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~ 612 (1112)
.......++++|||+||++||.|++..+.+++...++++.+++||.....+...+..+++|+|+||++|++++....
T Consensus 122 ~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~--- 198 (434)
T 2db3_A 122 PHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTF--- 198 (434)
T ss_dssp CCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTS---
T ss_pred ccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCC---
Confidence 54334458899999999999999999999999988999999999999999988898999999999999999987643
Q ss_pred cccCCceEEEeccchhhhccCChhHHHHHHHhc--CCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccE
Q 001261 613 TNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI--RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQ 690 (1112)
Q Consensus 613 ~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~--~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q 690 (1112)
..+.++++|||||||+|++++|...+..|+..+ ++.+|+|+||||+|..+..++..++.+++.+.++........+.+
T Consensus 199 ~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~ 278 (434)
T 2db3_A 199 ITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQ 278 (434)
T ss_dssp CCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEE
T ss_pred cccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccce
Confidence 568899999999999999999999999999885 678999999999999999999999999999998877777778888
Q ss_pred EEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEe
Q 001261 691 LVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIA 770 (1112)
Q Consensus 691 ~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVa 770 (1112)
.+.......+...|+.+|.... .++||||+++..|+.++..|...|+.+..+||++++.+|..+++.|++|..+||||
T Consensus 279 ~~~~~~~~~k~~~l~~~l~~~~--~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLva 356 (434)
T 2db3_A 279 TIYEVNKYAKRSKLIEILSEQA--DGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIA 356 (434)
T ss_dssp EEEECCGGGHHHHHHHHHHHCC--TTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEE
T ss_pred EEEEeCcHHHHHHHHHHHHhCC--CCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEE
Confidence 8888888889999999887743 45999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecC-CccCchHHHHHHHhhccCCCChhHHH
Q 001261 771 TSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISE-EDAKYSPDLVKALELSEQVVPDDLKA 846 (1112)
Q Consensus 771 T~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~-~d~~~~~~i~~~l~~~~~~vp~~l~~ 846 (1112)
|+++++|||||++++|||||+|.++..|+||+||+||.|+.|.|++|+++ .+...+..|++.|....+.||++|..
T Consensus 357 T~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~ 433 (434)
T 2db3_A 357 TSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRT 433 (434)
T ss_dssp CGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC-
T ss_pred chhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHh
Confidence 99999999999999999999999999999999999999999999999995 57788999999999999999999864
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-58 Score=540.40 Aligned_cols=392 Identities=42% Similarity=0.689 Sum_probs=353.9
Q ss_pred ceeccCCCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCC
Q 001261 455 LKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPP 534 (1112)
Q Consensus 455 ~~~~~~~~p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~ 534 (1112)
+.+.|..+|.|+.+|.+++|++.+++.|..+||..|||+|.++||.++.|+++|+++|||||||++|++|++.++.....
T Consensus 3 ~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~ 82 (417)
T 2i4i_A 3 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGP 82 (417)
T ss_dssp EEEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCC
T ss_pred cccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccc
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999998765321
Q ss_pred C-------------CCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHH
Q 001261 535 V-------------AAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM 601 (1112)
Q Consensus 535 ~-------------~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L 601 (1112)
. ....++++|||+||++|+.|++..+..++...++.+.+++||.....+...+..+++|+|+||++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l 162 (417)
T 2i4i_A 83 GEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRL 162 (417)
T ss_dssp CHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHH
T ss_pred cchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHH
Confidence 1 112357899999999999999999999998889999999999999999888988999999999999
Q ss_pred HHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhc--CC--CCcEEEEeccccHHHHHHHHHhcCCCeEEE
Q 001261 602 IDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI--RP--DRQTVLFSATFPRQVEILARKVLNKPVEIQ 677 (1112)
Q Consensus 602 ~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~--~~--~~q~il~SAT~~~~~~~l~~~~~~~p~~i~ 677 (1112)
..++.... ..+..+++|||||||++++++|...+..++... ++ ..|+|+||||++..+..++..++.+|+.+.
T Consensus 163 ~~~l~~~~---~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 239 (417)
T 2i4i_A 163 VDMMERGK---IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLA 239 (417)
T ss_dssp HHHHHTTS---BCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEE
T ss_pred HHHHHcCC---cChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEE
Confidence 99887643 467889999999999999999999999998753 32 689999999999999999999999998888
Q ss_pred EcCcccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHH
Q 001261 678 VGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTI 757 (1112)
Q Consensus 678 i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~ 757 (1112)
+.........+.+.+.......+...+..++......+++||||+++..++.++..|...|+.+..+||++++.+|..++
T Consensus 240 ~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~ 319 (417)
T 2i4i_A 240 VGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEAL 319 (417)
T ss_dssp EC----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred eCCCCCCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHH
Confidence 87766677778888888888888888888888765678999999999999999999999999999999999999999999
Q ss_pred HHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhcc
Q 001261 758 SDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSE 837 (1112)
Q Consensus 758 ~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~ 837 (1112)
+.|++|..+|||||+++++|||+|++++||+|++|.++..|+||+||+||.|+.|.|++|+++.+...+..|++.+....
T Consensus 320 ~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~ 399 (417)
T 2i4i_A 320 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAK 399 (417)
T ss_dssp HHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTT
T ss_pred HHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHH
Q 001261 838 QVVPDDLKALAD 849 (1112)
Q Consensus 838 ~~vp~~l~~~~~ 849 (1112)
+.+|.+|..++.
T Consensus 400 ~~~~~~l~~~~~ 411 (417)
T 2i4i_A 400 QEVPSWLENMAY 411 (417)
T ss_dssp CCCCHHHHHHHT
T ss_pred CcCCHHHHHHHH
Confidence 999999877653
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-54 Score=512.57 Aligned_cols=372 Identities=33% Similarity=0.564 Sum_probs=337.1
Q ss_pred CCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCC
Q 001261 462 VPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGP 541 (1112)
Q Consensus 462 ~p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~ 541 (1112)
.+.++.+|.+++|++.+++.|..+||..|+|+|.++|+.++.|+++|++++||||||++|++|++..+... ..++
T Consensus 32 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~~~ 106 (410)
T 2j0s_A 32 EVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ-----VRET 106 (410)
T ss_dssp TCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT-----SCSC
T ss_pred CccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc-----cCCc
Confidence 35567899999999999999999999999999999999999999999999999999999999999876432 2467
Q ss_pred cEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEE
Q 001261 542 VGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYL 621 (1112)
Q Consensus 542 ~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~v 621 (1112)
++|||+||++|+.|++..+..++...++.+..++||.....+...+..+++|+|+||++|.+++.... ..+..+++|
T Consensus 107 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~---~~~~~~~~v 183 (410)
T 2j0s_A 107 QALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRS---LRTRAIKML 183 (410)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTS---SCCTTCCEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCC---ccHhheeEE
Confidence 89999999999999999999999989999999999999999988888899999999999999887642 467889999
Q ss_pred EeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccc-hh
Q 001261 622 VMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPES-DR 700 (1112)
Q Consensus 622 ViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~-~k 700 (1112)
||||||+|++++|...+..++..+++..|+|+||||++..+..++..++.+|+.+.+.........+.+.+...... .+
T Consensus 184 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 263 (410)
T 2j0s_A 184 VLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWK 263 (410)
T ss_dssp EEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHH
T ss_pred EEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhH
Confidence 99999999999999999999999999999999999999999888889999998887776666666777776655544 47
Q ss_pred HHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCC
Q 001261 701 FLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDV 780 (1112)
Q Consensus 701 ~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi 780 (1112)
+..+..++... ..+++||||+++..++.++..|...|+.+..+||++++.+|..+++.|++|..+|||||+++++|||+
T Consensus 264 ~~~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi 342 (410)
T 2j0s_A 264 FDTLCDLYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDV 342 (410)
T ss_dssp HHHHHHHHHHH-TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCC
T ss_pred HHHHHHHHHhc-CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCc
Confidence 77777777654 46799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhccCCCCh
Q 001261 781 KELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPD 842 (1112)
Q Consensus 781 ~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp~ 842 (1112)
|++++||+|++|+++..|+||+||+||.|+.|.|++|+++.+...+..|.+.+......+|.
T Consensus 343 ~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (410)
T 2j0s_A 343 PQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPM 404 (410)
T ss_dssp TTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCS
T ss_pred ccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceeccc
Confidence 99999999999999999999999999999999999999999999999998888776665654
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-54 Score=504.80 Aligned_cols=378 Identities=31% Similarity=0.545 Sum_probs=325.0
Q ss_pred CCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCC
Q 001261 461 DVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDG 540 (1112)
Q Consensus 461 ~~p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~ 540 (1112)
..+..+.+|..++|++.+++.|..+||..|+|+|.++|+.++.|+++|++++||||||++|++|++..+... ..+
T Consensus 34 ~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-----~~~ 108 (414)
T 3eiq_A 34 NWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD-----LKA 108 (414)
T ss_dssp CCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT-----SCS
T ss_pred CccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc-----CCc
Confidence 345667899999999999999999999999999999999999999999999999999999999999886542 246
Q ss_pred CcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHh-cCCeEEEeCchHHHHHHHhcCCcccccCCce
Q 001261 541 PVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELK-RGTEIVVCTPGRMIDILCTSGGKITNLRRVT 619 (1112)
Q Consensus 541 ~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~-~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~ 619 (1112)
+++|||+||++|+.|++..+..++...++.+..++||.....+...+. .+++|+|+||++|.+++.... ..+..++
T Consensus 109 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~---~~~~~~~ 185 (414)
T 3eiq_A 109 TQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRY---LSPKYIK 185 (414)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTS---SCSTTCC
T ss_pred eeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCC---cccccCc
Confidence 789999999999999999999999999999999999999888877776 678999999999999987643 4577899
Q ss_pred EEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccc-
Q 001261 620 YLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPES- 698 (1112)
Q Consensus 620 ~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~- 698 (1112)
+|||||||++++++|...+..++..+++..|+|+||||++..+..++..++.+|..+.+.........+.+.+......
T Consensus 186 ~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (414)
T 3eiq_A 186 MFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREE 265 (414)
T ss_dssp EEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSST
T ss_pred EEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHH
Confidence 9999999999999999999999999999999999999999999999999999998888777766667777776655544
Q ss_pred hhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccC
Q 001261 699 DRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGL 778 (1112)
Q Consensus 699 ~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~Gl 778 (1112)
.+...+..++... ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|..+|||||+++++||
T Consensus 266 ~~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 344 (414)
T 3eiq_A 266 WKLDTLCDLYETL-TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGI 344 (414)
T ss_dssp THHHHHHHHHHSS-CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--C
T ss_pred hHHHHHHHHHHhC-CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCC
Confidence 4666676666553 567999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhHHHH
Q 001261 779 DVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKAL 847 (1112)
Q Consensus 779 Di~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~~ 847 (1112)
|+|++++||+|++|.++..|+||+||+||.|+.|.|++|+++.+...+..+.+.++.....+|..+.++
T Consensus 345 dip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 413 (414)
T 3eiq_A 345 DVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADL 413 (414)
T ss_dssp CGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC-----
T ss_pred CccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChhhhhc
Confidence 999999999999999999999999999999999999999999999999999999998888888776554
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-52 Score=492.44 Aligned_cols=371 Identities=33% Similarity=0.554 Sum_probs=331.0
Q ss_pred CCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCc
Q 001261 463 PKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPV 542 (1112)
Q Consensus 463 p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~ 542 (1112)
+.+..+|.+++|++.+++.|..+||..|+|+|.++|+.++.|+++|+++|||||||++|++|++.++... ..+++
T Consensus 17 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~-----~~~~~ 91 (400)
T 1s2m_A 17 NTKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK-----LNKIQ 91 (400)
T ss_dssp ----CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT-----SCSCC
T ss_pred ccccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc-----cCCcc
Confidence 3456789999999999999999999999999999999999999999999999999999999999886542 24678
Q ss_pred EEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEE
Q 001261 543 GLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLV 622 (1112)
Q Consensus 543 ~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vV 622 (1112)
+|||+||++|+.|++..+..++...++.+..++|+.....+...+..+++|+|+||++|..++.... ..+.++++||
T Consensus 92 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~---~~~~~~~~vI 168 (400)
T 1s2m_A 92 ALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKV---ADLSDCSLFI 168 (400)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC---SCCTTCCEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCC---cccccCCEEE
Confidence 9999999999999999999999988999999999999888888888889999999999998886543 4678899999
Q ss_pred eccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHH
Q 001261 623 MDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFL 702 (1112)
Q Consensus 623 iDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~ 702 (1112)
|||||++++.+|...+..++..+++..|+|+||||+|..+..++..++..|..+.+... .....+.+.+.......+..
T Consensus 169 iDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~ 247 (400)
T 1s2m_A 169 MDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE-LTLKGITQYYAFVEERQKLH 247 (400)
T ss_dssp EESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS-CBCTTEEEEEEECCGGGHHH
T ss_pred EeCchHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc-cccCCceeEEEEechhhHHH
Confidence 99999999888888999999999999999999999999999999999999876654432 34455667777777777777
Q ss_pred HHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCC
Q 001261 703 RLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKE 782 (1112)
Q Consensus 703 ~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~ 782 (1112)
.+..++.. ...+++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|..+|||||+++++|||+|+
T Consensus 248 ~l~~~~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~ 326 (400)
T 1s2m_A 248 CLNTLFSK-LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQA 326 (400)
T ss_dssp HHHHHHHH-SCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTT
T ss_pred HHHHHHhh-cCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccC
Confidence 77777765 35679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChh
Q 001261 783 LELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDD 843 (1112)
Q Consensus 783 v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp~~ 843 (1112)
+++||+|++|+++..|+||+||+||.|+.|.|++|+++.+...+..|.+.+....+.+|..
T Consensus 327 ~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 387 (400)
T 1s2m_A 327 VNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPAT 387 (400)
T ss_dssp EEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSS
T ss_pred CCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCccccccc
Confidence 9999999999999999999999999999999999999999989999988887776666654
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-51 Score=480.96 Aligned_cols=368 Identities=30% Similarity=0.553 Sum_probs=323.7
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEE
Q 001261 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (1112)
Q Consensus 467 ~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl 546 (1112)
.+|.+++|++.+++.|..+||..|+|+|.++|+.++.|+++|+++|||+|||++|++|++..+... ..++++|||
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~~~~~lil 82 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQVSVLVM 82 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC-----TTCCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc-----CCCeeEEEE
Confidence 579999999999999999999999999999999999999999999999999999999999886542 236789999
Q ss_pred ccchhHHHHHHHHHHHHhhhc-CceEEEEeCCCChHHHHHHHhcC-CeEEEeCchHHHHHHHhcCCcccccCCceEEEec
Q 001261 547 APTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (1112)
Q Consensus 547 ~PtreLa~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~l~~~-~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViD 624 (1112)
|||++|+.||+..+..++..+ ++.+..++||.....+...+..+ ++|+|+||++|..++.... ..+.++++||||
T Consensus 83 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~---~~~~~~~~vViD 159 (391)
T 1xti_A 83 CHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS---LNLKHIKHFILD 159 (391)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTS---SCCTTCSEEEEC
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCC---ccccccCEEEEe
Confidence 999999999999999998776 78999999999888777666654 7999999999999886543 457889999999
Q ss_pred cchhhhc-cCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcc-cccCCccEEEEecccchhHH
Q 001261 625 EADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRS-VVNKDITQLVEVRPESDRFL 702 (1112)
Q Consensus 625 Eah~~~~-~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~-~~~~~i~q~~~~~~~~~k~~ 702 (1112)
|||++++ .+|...+..++..+++..|+|+||||+++.+..++..++.+|..+.+.... .....+.+.+.......+..
T Consensus 160 EaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (391)
T 1xti_A 160 ECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNR 239 (391)
T ss_dssp SHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHH
T ss_pred CHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHH
Confidence 9999987 478888999999888899999999999999999999999999887765543 33445666777777778888
Q ss_pred HHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCC
Q 001261 703 RLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKE 782 (1112)
Q Consensus 703 ~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~ 782 (1112)
.+..++... ..+++||||+++..++.++..|...|+.+..+||++++.+|..+++.|++|...|||||+++++|||+|+
T Consensus 240 ~l~~~l~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~ 318 (391)
T 1xti_A 240 KLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIER 318 (391)
T ss_dssp HHHHHHHHS-CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTT
T ss_pred HHHHHHHhc-CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCccc
Confidence 888877664 5689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCC-ccCchHHHHHHHhhccCCCChh
Q 001261 783 LELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEE-DAKYSPDLVKALELSEQVVPDD 843 (1112)
Q Consensus 783 v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~-d~~~~~~i~~~l~~~~~~vp~~ 843 (1112)
+++||+|++|+++..|+||+||+||.|+.|.|++|+++. +..++..+.+.+......+|..
T Consensus 319 ~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (391)
T 1xti_A 319 VNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 380 (391)
T ss_dssp EEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSC
T ss_pred CCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCcc
Confidence 999999999999999999999999999999999999876 4456667777766655556643
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-51 Score=482.60 Aligned_cols=369 Identities=28% Similarity=0.468 Sum_probs=319.0
Q ss_pred CCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCC
Q 001261 462 VPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGD 539 (1112)
Q Consensus 462 ~p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g--~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~ 539 (1112)
.+.++.+|.+++|++.+++.|..+||..|+|+|.++|+.++.+ +++|+++|||||||++|++|++..+... ..
T Consensus 20 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-----~~ 94 (412)
T 3fht_A 20 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NK 94 (412)
T ss_dssp TTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-----SC
T ss_pred CccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc-----CC
Confidence 3456889999999999999999999999999999999999987 9999999999999999999999887542 34
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhc-CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCc
Q 001261 540 GPVGLIMAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRV 618 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i 618 (1112)
++++|||+||++|+.|++..+..+...+ ++.+.+.+++...... ...+++|+|+||++|.+++... ....+.++
T Consensus 95 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~--~~~~~~~~ 169 (412)
T 3fht_A 95 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKL--KFIDPKKI 169 (412)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTS--CSSCGGGC
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhc--CCcChhhC
Confidence 6789999999999999999999998765 6777778877654322 1345799999999999988543 23567889
Q ss_pred eEEEeccchhhhc-cCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEeccc
Q 001261 619 TYLVMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPE 697 (1112)
Q Consensus 619 ~~vViDEah~~~~-~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~ 697 (1112)
++|||||||++++ .+|...+..++..+++..|+|+||||+++.+..++..++.+|..+.+.........+.+.+.....
T Consensus 170 ~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (412)
T 3fht_A 170 KVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSS 249 (412)
T ss_dssp CEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSS
T ss_pred cEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCC
Confidence 9999999999987 688889999999999999999999999999999999999999888877766666677776665554
Q ss_pred -chhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccc
Q 001261 698 -SDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAAR 776 (1112)
Q Consensus 698 -~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~ 776 (1112)
..++..+..++.. ...+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|..+|||||+++++
T Consensus 250 ~~~~~~~l~~~~~~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 328 (412)
T 3fht_A 250 RDEKFQALCNLYGA-ITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCAR 328 (412)
T ss_dssp HHHHHHHHHHHHHH-HSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTS
T ss_pred hHHHHHHHHHHHhh-cCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCcccc
Confidence 4566666666654 45679999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccEEEEeCCCC------CHhHHHHHhcccCCCCCccEEEEEecCCc-cCchHHHHHHHhhccCCCC
Q 001261 777 GLDVKELELVINFDAPN------HYEDYVHRVGRTGRAGRKGCAITFISEED-AKYSPDLVKALELSEQVVP 841 (1112)
Q Consensus 777 GlDi~~v~~VI~~d~p~------s~~~y~QriGR~gR~G~~g~~i~~~~~~d-~~~~~~i~~~l~~~~~~vp 841 (1112)
|||+|++++||+|++|+ +...|+||+||+||.|+.|.|++|+++.+ ...+..+.+.+......++
T Consensus 329 Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 400 (412)
T 3fht_A 329 GIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLD 400 (412)
T ss_dssp SCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC-
T ss_pred CCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCC
Confidence 99999999999999994 67899999999999999999999998764 6677777777766555554
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-51 Score=475.65 Aligned_cols=357 Identities=31% Similarity=0.550 Sum_probs=310.7
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCc
Q 001261 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPV 542 (1112)
Q Consensus 465 pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g--~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~ 542 (1112)
.+.+|.+++|++.+++.|..+||..|+|+|.++|+.++.+ +++|+++|||||||++|++|++.++... ..+++
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-----~~~~~ 77 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE-----DASPQ 77 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-----CCSCC
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC-----CCCcc
Confidence 4679999999999999999999999999999999999998 9999999999999999999999886542 34678
Q ss_pred EEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEE
Q 001261 543 GLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLV 622 (1112)
Q Consensus 543 ~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vV 622 (1112)
+|||+||++|+.|++..+..++...++.+..++++..... ...+++|+|+||++|..++... ...+.++++||
T Consensus 78 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~~~~~~~---~~~~~~~~~iI 150 (395)
T 3pey_A 78 AICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN----KQINAQVIVGTPGTVLDLMRRK---LMQLQKIKIFV 150 (395)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT----SCBCCSEEEECHHHHHHHHHTT---CBCCTTCCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh----ccCCCCEEEEcHHHHHHHHHcC---CcccccCCEEE
Confidence 9999999999999999999999888888888888764322 1236899999999999988653 25688899999
Q ss_pred eccchhhhc-cCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccc-hh
Q 001261 623 MDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPES-DR 700 (1112)
Q Consensus 623 iDEah~~~~-~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~-~k 700 (1112)
|||||++.+ ++|...+..++..++++.|+|+||||+++.+..++..++.++..+.+.........+.+.+...... .+
T Consensus 151 iDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (395)
T 3pey_A 151 LDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADK 230 (395)
T ss_dssp EETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHH
T ss_pred EEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHH
Confidence 999999988 7888999999999999999999999999999999999999998877776666666676666655443 45
Q ss_pred HHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCC
Q 001261 701 FLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDV 780 (1112)
Q Consensus 701 ~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi 780 (1112)
...+..++. ....+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|..+|||||+++++|||+
T Consensus 231 ~~~l~~~~~-~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi 309 (395)
T 3pey_A 231 FDVLTELYG-LMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDI 309 (395)
T ss_dssp HHHHHHHHT-TTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCC
T ss_pred HHHHHHHHH-hccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCc
Confidence 555544444 3456899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCCCC------CHhHHHHHhcccCCCCCccEEEEEecCCc-cCchHHHHHHHh
Q 001261 781 KELELVINFDAPN------HYEDYVHRVGRTGRAGRKGCAITFISEED-AKYSPDLVKALE 834 (1112)
Q Consensus 781 ~~v~~VI~~d~p~------s~~~y~QriGR~gR~G~~g~~i~~~~~~d-~~~~~~i~~~l~ 834 (1112)
|++++||+|++|+ ++..|+||+||+||.|+.|.|++|+++.+ ...+..+.+.+.
T Consensus 310 p~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~ 370 (395)
T 3pey_A 310 PTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFG 370 (395)
T ss_dssp TTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTT
T ss_pred ccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhC
Confidence 9999999999999 99999999999999999999999998754 444555555554
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-52 Score=491.36 Aligned_cols=374 Identities=30% Similarity=0.525 Sum_probs=190.7
Q ss_pred CCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCC
Q 001261 462 VPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGP 541 (1112)
Q Consensus 462 ~p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~ 541 (1112)
...++.+|.+++|++.+++.|..+||..|+|+|.++|+.++.|+++|+++|||+|||++|++|++..+... ..++
T Consensus 16 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~-----~~~~ 90 (394)
T 1fuu_A 16 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----VKAP 90 (394)
T ss_dssp SCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----CCSC
T ss_pred cccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc-----CCCC
Confidence 45677899999999999999999999999999999999999999999999999999999999999886542 3467
Q ss_pred cEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEE
Q 001261 542 VGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYL 621 (1112)
Q Consensus 542 ~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~v 621 (1112)
++|||+||++|+.|++..+..++...++.+..++||.....+...+. +++|+|+||++|...+.... ..+.++++|
T Consensus 91 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~---~~~~~~~~v 166 (394)
T 1fuu_A 91 QALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRR---FRTDKIKMF 166 (394)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTS---SCCTTCCEE
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCC---cchhhCcEE
Confidence 89999999999999999999999888999999999998877766655 58999999999998886542 457789999
Q ss_pred EeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccch-h
Q 001261 622 VMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESD-R 700 (1112)
Q Consensus 622 ViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~-k 700 (1112)
||||||++++++|...+..++..+++..|+|+||||+++.+..+...++..|..+.+.........+.+.+....... +
T Consensus 167 IiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (394)
T 1fuu_A 167 ILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYK 246 (394)
T ss_dssp EEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC---------------------
T ss_pred EEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhH
Confidence 999999999999999999999999999999999999999999999999999998887766555555555554433333 5
Q ss_pred HHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCC
Q 001261 701 FLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDV 780 (1112)
Q Consensus 701 ~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi 780 (1112)
...+..++.. ...+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|..+|||||+++++|||+
T Consensus 247 ~~~l~~~~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi 325 (394)
T 1fuu_A 247 YECLTDLYDS-ISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDV 325 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhc-CCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCc
Confidence 5555555543 346799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhHH
Q 001261 781 KELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLK 845 (1112)
Q Consensus 781 ~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~ 845 (1112)
|++++||+|++|+++..|+||+||+||.|+.|.|++|+++.+...+..|.+.+......+|..+.
T Consensus 326 ~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 390 (394)
T 1fuu_A 326 QQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIA 390 (394)
T ss_dssp -----------------------------------------------------------------
T ss_pred ccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCcchh
Confidence 99999999999999999999999999999999999999999998888888888776666665543
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-51 Score=502.36 Aligned_cols=359 Identities=29% Similarity=0.530 Sum_probs=306.1
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHH--cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchh
Q 001261 474 LTSKIMETIRKLNYEKPMPIQAQALPVIM--SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRE 551 (1112)
Q Consensus 474 L~~~l~~~l~~~~~~~pt~iQ~~ai~~il--~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptre 551 (1112)
|++.+++.|..+||..|+|+|.++|+.++ .|+++|+++|||||||++|++|++.++..... ....++++|||+||++
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~-~~~~~~~~lvl~Ptr~ 106 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF-DSQYMVKAVIVAPTRD 106 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-SSTTSCCEEEECSSHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc-cccCCCeEEEEcchHH
Confidence 99999999999999999999999999999 78899999999999999999999999876532 2234689999999999
Q ss_pred HHHHHHHHHHHHhhh----cCceEEEEeCCCChHHHHHHHhc-CCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccc
Q 001261 552 LVQQIHSDIRKFAKV----MGVRCVPVYGGSGVAQQISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEA 626 (1112)
Q Consensus 552 La~Q~~~~~~~~~~~----~~i~~~~~~gg~~~~~~~~~l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEa 626 (1112)
||.|++..+..++.. ..+.+..++||.....+...+.. +++||||||++|++++... ....+..+.+||||||
T Consensus 107 La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~--~~~~~~~~~~lViDEa 184 (579)
T 3sqw_A 107 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKY--SNKFFRFVDYKVLDEA 184 (579)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHH--HHHHCTTCCEEEEETH
T ss_pred HHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhc--cccccccCCEEEEECh
Confidence 999999999998743 34678899999998888877754 7999999999999988653 1246788999999999
Q ss_pred hhhhccCChhHHHHHHHhcC-------CCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCc----ccccCCccEEEEec
Q 001261 627 DRMFDMGFEPQITRIVQNIR-------PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGR----SVVNKDITQLVEVR 695 (1112)
Q Consensus 627 h~~~~~gf~~~i~~il~~~~-------~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~----~~~~~~i~q~~~~~ 695 (1112)
|+|++++|...+..|+..++ +..|+|+||||+++.+..++..++..|..+.+... ......+.+.+...
T Consensus 185 h~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 264 (579)
T 3sqw_A 185 DRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVIS 264 (579)
T ss_dssp HHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEE
T ss_pred HHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEe
Confidence 99999999999999887764 26799999999999999999999999876665432 22233445544444
Q ss_pred cc-chhHHHHHHH----HHhhhcCCeEEEEeCCHHHHHHHHHHHHhc---CCCeeeecCCCCHHHHHHHHHHhhcCCccE
Q 001261 696 PE-SDRFLRLLEL----LGEWYEKGKILIFVHSQEKCDALFRDLLKH---GYPCLSLHGAKDQTDRESTISDFKSNVCNL 767 (1112)
Q Consensus 696 ~~-~~k~~~ll~~----l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~---g~~~~~ihg~~~~~~R~~~~~~F~~g~~~V 767 (1112)
.. ......++.. +.......++||||+++..|+.++..|... ++.+..+||+|++.+|..++..|++|...|
T Consensus 265 ~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~v 344 (579)
T 3sqw_A 265 EKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGI 344 (579)
T ss_dssp SSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEE
T ss_pred cchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeE
Confidence 33 3333333333 333244679999999999999999999887 899999999999999999999999999999
Q ss_pred EEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhh
Q 001261 768 LIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALEL 835 (1112)
Q Consensus 768 LVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~ 835 (1112)
||||+++++|||+|+|++||+|++|.++..|+||+||+||.|+.|.|++|+++.+..++..|.+....
T Consensus 345 LVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~ 412 (579)
T 3sqw_A 345 LVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNI 412 (579)
T ss_dssp EEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCC
T ss_pred EEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999998888888777643
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-50 Score=466.83 Aligned_cols=357 Identities=34% Similarity=0.588 Sum_probs=321.3
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC-CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEE
Q 001261 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG-RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGL 544 (1112)
Q Consensus 466 i~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g-~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~L 544 (1112)
..+|.+++|++.+++.|..+||..|+|+|.++|+.++.+ +++|+++|||||||++|++|++..+.. ..++++|
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~------~~~~~~l 78 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE------NNGIEAI 78 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS------SSSCCEE
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc------cCCCcEE
Confidence 457999999999999999999999999999999999988 699999999999999999999987653 2477899
Q ss_pred EEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEec
Q 001261 545 IMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (1112)
Q Consensus 545 Il~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViD 624 (1112)
||+||++|+.|++..+..++...++.+..++||.....+...+. +++|+|+||++|..++.... ..+.++++||||
T Consensus 79 il~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~---~~~~~~~~iIiD 154 (367)
T 1hv8_A 79 ILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGT---LNLKNVKYFILD 154 (367)
T ss_dssp EECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTC---SCTTSCCEEEEE
T ss_pred EEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCC---cccccCCEEEEe
Confidence 99999999999999999999888899999999999887776665 68999999999999886543 457889999999
Q ss_pred cchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHH
Q 001261 625 EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRL 704 (1112)
Q Consensus 625 Eah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~l 704 (1112)
|||.+.+++|...+..++..+++..++|+||||+++.+..++..++.++..+.... ...+.+.+.......++..+
T Consensus 155 Eah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l 230 (367)
T 1hv8_A 155 EADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI----NANIEQSYVEVNENERFEAL 230 (367)
T ss_dssp THHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS----SSSSEEEEEECCGGGHHHHH
T ss_pred CchHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC----CCCceEEEEEeChHHHHHHH
Confidence 99999999999999999999999999999999999999889999988876654432 23566666667777888888
Q ss_pred HHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCcc
Q 001261 705 LELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELE 784 (1112)
Q Consensus 705 l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~ 784 (1112)
..++.. ..+++||||+++..++.++..|...|+.+..+||+++..+|..+++.|++|..+|||||+++++|||+|+++
T Consensus 231 ~~~l~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~ 308 (367)
T 1hv8_A 231 CRLLKN--KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLN 308 (367)
T ss_dssp HHHHCS--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCS
T ss_pred HHHHhc--CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCC
Confidence 888763 467899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhccC
Q 001261 785 LVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQ 838 (1112)
Q Consensus 785 ~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~ 838 (1112)
+||+|++|+++..|+||+||+||.|+.|.|++|+++.+...+..|.+.+.....
T Consensus 309 ~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~ 362 (367)
T 1hv8_A 309 CVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIK 362 (367)
T ss_dssp EEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCC
T ss_pred EEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999999999999999999888888888765443
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-52 Score=504.02 Aligned_cols=365 Identities=28% Similarity=0.480 Sum_probs=178.6
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCc
Q 001261 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPV 542 (1112)
Q Consensus 465 pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g--~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~ 542 (1112)
++.+|..++|++.+++.|..+||..|+|+|.++|+.++.+ +++|++|+||||||++|++|++.++... ..+++
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~-----~~~~~ 164 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NKYPQ 164 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT-----SCSCC
T ss_pred CcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc-----CCCCc
Confidence 4678999999999999999999999999999999999987 9999999999999999999999876542 34678
Q ss_pred EEEEccchhHHHHHHHHHHHHhhhc-CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEE
Q 001261 543 GLIMAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYL 621 (1112)
Q Consensus 543 ~LIl~PtreLa~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~v 621 (1112)
+|||+||++||.|++..+..+...+ ++.+.+.+++...... ...+++||||||++|++++... ....+.++++|
T Consensus 165 ~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~--~~~~~~~~~~i 239 (479)
T 3fmp_B 165 CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKL--KFIDPKKIKVF 239 (479)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTS--CCCCGGGCCEE
T ss_pred EEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhc--CCcCcccCCEE
Confidence 9999999999999999999988764 5677777777654321 1335799999999999988553 34567899999
Q ss_pred Eeccchhhhc-cCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEeccc-ch
Q 001261 622 VMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPE-SD 699 (1112)
Q Consensus 622 ViDEah~~~~-~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~-~~ 699 (1112)
||||||+|++ .+|...+..++..+++.+|+|+||||++..+..++..++.+|..+.+.........+.+.+..... ..
T Consensus 240 ViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 319 (479)
T 3fmp_B 240 VLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE 319 (479)
T ss_dssp EECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC---------------------
T ss_pred EEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHH
Confidence 9999999987 688889999999999999999999999999999999999999988887766666666666655543 45
Q ss_pred hHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCC
Q 001261 700 RFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLD 779 (1112)
Q Consensus 700 k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlD 779 (1112)
++..|..++.. ...+++||||+++..|+.++..|...++.+..+||+|++.+|..+++.|++|..+|||||+++++|||
T Consensus 320 ~~~~l~~~~~~-~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlD 398 (479)
T 3fmp_B 320 KFQALCNLYGA-ITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGID 398 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhh-ccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCc
Confidence 55566665554 34579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEeCCCC------CHhHHHHHhcccCCCCCccEEEEEecCCc-cCchHHHHHHHhhccCCC
Q 001261 780 VKELELVINFDAPN------HYEDYVHRVGRTGRAGRKGCAITFISEED-AKYSPDLVKALELSEQVV 840 (1112)
Q Consensus 780 i~~v~~VI~~d~p~------s~~~y~QriGR~gR~G~~g~~i~~~~~~d-~~~~~~i~~~l~~~~~~v 840 (1112)
+|++++||+|++|. +...|+||+||+||.|+.|.|++|+++.+ ..++..|.+.+......+
T Consensus 399 ip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l 466 (479)
T 3fmp_B 399 VEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERL 466 (479)
T ss_dssp --------------------------------------------------------------------
T ss_pred cccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceEC
Confidence 99999999999995 56899999999999999999999998754 666677777665544443
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-50 Score=497.35 Aligned_cols=359 Identities=29% Similarity=0.526 Sum_probs=304.3
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHH--cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchh
Q 001261 474 LTSKIMETIRKLNYEKPMPIQAQALPVIM--SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRE 551 (1112)
Q Consensus 474 L~~~l~~~l~~~~~~~pt~iQ~~ai~~il--~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptre 551 (1112)
|++.+++.|..+||..|+|+|.++|+.++ .++++|++||||||||++|++|++.++..... ....++++|||+||++
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~-~~~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF-DSQYMVKAVIVAPTRD 157 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-SSTTSCCEEEECSSHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccc-cccCCeeEEEEcCcHH
Confidence 99999999999999999999999999999 67899999999999999999999999877532 2234678999999999
Q ss_pred HHHHHHHHHHHHhhh----cCceEEEEeCCCChHHHHHHHh-cCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccc
Q 001261 552 LVQQIHSDIRKFAKV----MGVRCVPVYGGSGVAQQISELK-RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEA 626 (1112)
Q Consensus 552 La~Q~~~~~~~~~~~----~~i~~~~~~gg~~~~~~~~~l~-~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEa 626 (1112)
||.|++..+..++.. ..+.+..++||.....+...+. .+++||||||++|++++.... ...+..+++||||||
T Consensus 158 La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~--~~~~~~~~~lViDEa 235 (563)
T 3i5x_A 158 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYS--NKFFRFVDYKVLDEA 235 (563)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHH--HHHCTTCCEEEEETH
T ss_pred HHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhcc--ccccccceEEEEeCH
Confidence 999999999998653 2466888999999888877764 478999999999999886531 235788999999999
Q ss_pred hhhhccCChhHHHHHHHhcC-------CCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcc----cccCCccEEEEec
Q 001261 627 DRMFDMGFEPQITRIVQNIR-------PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRS----VVNKDITQLVEVR 695 (1112)
Q Consensus 627 h~~~~~gf~~~i~~il~~~~-------~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~----~~~~~i~q~~~~~ 695 (1112)
|+|++++|...+..|+..++ +..|+|+||||+++.+..++..++..+..+.+.... .....+.+.+...
T Consensus 236 h~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (563)
T 3i5x_A 236 DRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVIS 315 (563)
T ss_dssp HHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEE
T ss_pred HHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEEC
Confidence 99999999999999887663 367999999999999999999999988766654322 2233444544444
Q ss_pred cc-chhHHHHHHH----HHhhhcCCeEEEEeCCHHHHHHHHHHHHhc---CCCeeeecCCCCHHHHHHHHHHhhcCCccE
Q 001261 696 PE-SDRFLRLLEL----LGEWYEKGKILIFVHSQEKCDALFRDLLKH---GYPCLSLHGAKDQTDRESTISDFKSNVCNL 767 (1112)
Q Consensus 696 ~~-~~k~~~ll~~----l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~---g~~~~~ihg~~~~~~R~~~~~~F~~g~~~V 767 (1112)
.. ..++..++.. +......+++||||+++..|+.++..|... ++.+..+||+|++.+|..+++.|++|..+|
T Consensus 316 ~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~v 395 (563)
T 3i5x_A 316 EKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGI 395 (563)
T ss_dssp SSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEE
T ss_pred chhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCE
Confidence 33 3333333333 333344679999999999999999999986 899999999999999999999999999999
Q ss_pred EEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhh
Q 001261 768 LIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALEL 835 (1112)
Q Consensus 768 LVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~ 835 (1112)
||||+++++|||+|+|++||+|++|.++..|+||+|||||.|+.|.|++|+++.+..++..|.+.+..
T Consensus 396 LvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~ 463 (563)
T 3i5x_A 396 LVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNI 463 (563)
T ss_dssp EEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCC
T ss_pred EEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999988888877776543
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-48 Score=440.95 Aligned_cols=335 Identities=33% Similarity=0.577 Sum_probs=288.4
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHH
Q 001261 474 LTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553 (1112)
Q Consensus 474 L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa 553 (1112)
|++.|.+.|..+||..|+|+|.++|+.++.++++|+++|||+|||++|++|++.. ++++|||+||++|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~-----------~~~~liv~P~~~L~ 69 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL-----------GMKSLVVTPTRELT 69 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-----------TCCEEEECSSHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh-----------cCCEEEEeCCHHHH
Confidence 5788999999999999999999999999999999999999999999999999864 56799999999999
Q ss_pred HHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccC
Q 001261 554 QQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG 633 (1112)
Q Consensus 554 ~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~g 633 (1112)
.|++..+..++..+++.+..++||.....+...+.. ++|+|+||++|..++.... ..+.++++|||||||++.+++
T Consensus 70 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~---~~~~~~~~iViDEah~~~~~~ 145 (337)
T 2z0m_A 70 RQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRN-ADIVVATPGRLLDLWSKGV---IDLSSFEIVIIDEADLMFEMG 145 (337)
T ss_dssp HHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTT-CSEEEECHHHHHHHHHTTS---CCGGGCSEEEEESHHHHHHTT
T ss_pred HHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCC-CCEEEECHHHHHHHHHcCC---cchhhCcEEEEEChHHhhccc
Confidence 999999999998889999999999988887766654 8999999999998876532 457889999999999999999
Q ss_pred ChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhc
Q 001261 634 FEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE 713 (1112)
Q Consensus 634 f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~ 713 (1112)
|...+..++..++...++++||||+|+.+..+...++.++..+... .....+.+.+....... ...+..+.. ..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~ 219 (337)
T 2z0m_A 146 FIDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDW--RSKVQALRE-NK 219 (337)
T ss_dssp CHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSS--HHHHHHHHT-CC
T ss_pred cHHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHH--HHHHHHHHh-CC
Confidence 9999999999999999999999999999999999999888765432 22333444444333322 223344433 34
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCC
Q 001261 714 KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPN 793 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~ 793 (1112)
.+++||||+++..++.++..|. .+..+||+++..+|..+++.|++|..+|||||+++++|||+|++++||+|++|+
T Consensus 220 ~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~ 295 (337)
T 2z0m_A 220 DKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQ 295 (337)
T ss_dssp CSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCS
T ss_pred CCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCC
Confidence 6799999999999999998885 688999999999999999999999999999999999999999999999999999
Q ss_pred CHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHh
Q 001261 794 HYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALE 834 (1112)
Q Consensus 794 s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~ 834 (1112)
++..|+||+||+||.|+.|.|++|++ .+...+..|.+.+.
T Consensus 296 s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 296 DLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp SHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred CHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 99999999999999999999999999 77666666665553
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-48 Score=469.39 Aligned_cols=350 Identities=20% Similarity=0.332 Sum_probs=285.5
Q ss_pred CCccccccc--CCCCHHHHHHHHH-CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCC
Q 001261 463 PKPIKTWHQ--TGLTSKIMETIRK-LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGD 539 (1112)
Q Consensus 463 p~pi~~~~~--~~L~~~l~~~l~~-~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~ 539 (1112)
+.....|.. +++++.+...|+. +||..|+|+|.++|+.++.|+|+|+++|||+|||++|++|++..
T Consensus 15 ~~~~~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~----------- 83 (591)
T 2v1x_A 15 DSSPAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS----------- 83 (591)
T ss_dssp -CCGGGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS-----------
T ss_pred CcchhccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc-----------
Confidence 344556654 7888999999998 79999999999999999999999999999999999999999842
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHH---H---hcCCeEEEeCchHHHH---HHHhcCC
Q 001261 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISE---L---KRGTEIVVCTPGRMID---ILCTSGG 610 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~---l---~~~~~IvV~Tp~~L~~---~l~~~~~ 610 (1112)
+..+|||+||++|+.|++..+..+ |+.+..++|+......... + ..+++|||+||++|.. ++... .
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l-~ 158 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRL-E 158 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHH-H
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHH-H
Confidence 358999999999999999988875 7889999999887655322 2 3568999999998742 22110 0
Q ss_pred cccccCCceEEEeccchhhhccC--ChhHHHH--HHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccC
Q 001261 611 KITNLRRVTYLVMDEADRMFDMG--FEPQITR--IVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNK 686 (1112)
Q Consensus 611 ~~~~l~~i~~vViDEah~~~~~g--f~~~i~~--il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~ 686 (1112)
....+..+++|||||||++++|| |.+.+.. ++....++.++|+||||+++.+...+..++..+..+.+.. .....
T Consensus 159 ~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~-~~~r~ 237 (591)
T 2v1x_A 159 KAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA-SFNRP 237 (591)
T ss_dssp HHHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC-CCCCT
T ss_pred hhhhccCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec-CCCCc
Confidence 12456789999999999999988 8887765 4555667899999999999998888887776553222221 22333
Q ss_pred CccEEEEeccc--chhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCC
Q 001261 687 DITQLVEVRPE--SDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNV 764 (1112)
Q Consensus 687 ~i~q~~~~~~~--~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~ 764 (1112)
++...+..... ..++..|+.+|......+++||||+++..++.++..|...|+.+..|||+|++.+|..+++.|.+|.
T Consensus 238 nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~ 317 (591)
T 2v1x_A 238 NLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANE 317 (591)
T ss_dssp TEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred ccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCC
Confidence 44433332221 3455667777765556789999999999999999999999999999999999999999999999999
Q ss_pred ccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHH
Q 001261 765 CNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDL 829 (1112)
Q Consensus 765 ~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i 829 (1112)
.+|||||+++++|||+|+|++||+|++|.+++.|+|++||+||.|.+|.|++||++.|...+..+
T Consensus 318 ~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~ 382 (591)
T 2v1x_A 318 IQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSM 382 (591)
T ss_dssp SSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred CeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987765444333
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-46 Score=443.19 Aligned_cols=325 Identities=25% Similarity=0.330 Sum_probs=269.1
Q ss_pred HHHHHHH-CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHH
Q 001261 478 IMETIRK-LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQI 556 (1112)
Q Consensus 478 l~~~l~~-~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~ 556 (1112)
+.+.++. ++| .|+|+|.++|+.++.|+++|+++|||||||++|++|++..+ ..++++|||+||++|+.|+
T Consensus 10 ~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~--------~~~~~~lil~Pt~~L~~q~ 80 (414)
T 3oiy_A 10 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA--------RKGKKSALVFPTVTLVKQT 80 (414)
T ss_dssp HHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH--------TTTCCEEEEESSHHHHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh--------cCCCEEEEEECCHHHHHHH
Confidence 3444554 566 79999999999999999999999999999999999988775 2378999999999999999
Q ss_pred HHHHHHHhhhcCceEEEEeCCCCh---HHHHHHHhcC-CeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhh--
Q 001261 557 HSDIRKFAKVMGVRCVPVYGGSGV---AQQISELKRG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF-- 630 (1112)
Q Consensus 557 ~~~~~~~~~~~~i~~~~~~gg~~~---~~~~~~l~~~-~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~-- 630 (1112)
+..+..++. .++.+..++||.+. ..++..+..+ ++|+|+||++|.+++.. ..+.++++|||||||++.
T Consensus 81 ~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~-----~~~~~~~~iViDEaH~~~~~ 154 (414)
T 3oiy_A 81 LERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-----LSQKRFDFVFVDDVDAVLKA 154 (414)
T ss_dssp HHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH-----HTTCCCSEEEESCHHHHHHC
T ss_pred HHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH-----hccccccEEEEeChHhhhhc
Confidence 999999988 89999999999998 6667777776 99999999999888753 466789999999998654
Q ss_pred --------c-cCChhH-HHHHHHhcC-----------CCCcEEEEecc-ccHHHH-HHHHHhcCCCeEEEEcCcccccCC
Q 001261 631 --------D-MGFEPQ-ITRIVQNIR-----------PDRQTVLFSAT-FPRQVE-ILARKVLNKPVEIQVGGRSVVNKD 687 (1112)
Q Consensus 631 --------~-~gf~~~-i~~il~~~~-----------~~~q~il~SAT-~~~~~~-~l~~~~~~~p~~i~i~~~~~~~~~ 687 (1112)
+ ++|... +..++..++ +..|+|+|||| +|..+. .+...++. +.+.........
T Consensus 155 ~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 230 (414)
T 3oiy_A 155 SRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARN 230 (414)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCS
T ss_pred cchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCcccccccc
Confidence 4 889988 888888887 88999999999 565443 33334433 222233334455
Q ss_pred ccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCee-eecCCCCHHHHHHHHHHhhcCCcc
Q 001261 688 ITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCL-SLHGAKDQTDRESTISDFKSNVCN 766 (1112)
Q Consensus 688 i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~-~ihg~~~~~~R~~~~~~F~~g~~~ 766 (1112)
+.+.+... .+...|..+|.. .++++||||+++..|+.++..|...|+.+. .+||. +|. ++.|++|.++
T Consensus 231 i~~~~~~~---~~~~~l~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~ 299 (414)
T 3oiy_A 231 ITHVRISS---RSKEKLVELLEI--FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKIN 299 (414)
T ss_dssp EEEEEESS---CCHHHHHHHHHH--HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCS
T ss_pred chheeecc---CHHHHHHHHHHH--cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCe
Confidence 66665544 455666666666 348999999999999999999999999998 99994 444 9999999999
Q ss_pred EEEe----cCcccccCCCCC-ccEEEEeCCC--CCHhHHHHHhcccCCCC----CccEEEEEecCCccCchHHHHHHHh
Q 001261 767 LLIA----TSVAARGLDVKE-LELVINFDAP--NHYEDYVHRVGRTGRAG----RKGCAITFISEEDAKYSPDLVKALE 834 (1112)
Q Consensus 767 VLVa----T~v~~~GlDi~~-v~~VI~~d~p--~s~~~y~QriGR~gR~G----~~g~~i~~~~~~d~~~~~~i~~~l~ 834 (1112)
|||| |+++++|||+|+ |++||+|++| .++..|+||+||+||.| ..|.||+|+ .+...+..|.+.+.
T Consensus 300 vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 300 ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp EEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred EEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 9999 999999999999 9999999999 99999999999999987 589999999 56666677777666
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-45 Score=446.32 Aligned_cols=341 Identities=20% Similarity=0.316 Sum_probs=278.2
Q ss_pred cccccCCCCHHHHHHHHH-CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEE
Q 001261 467 KTWHQTGLTSKIMETIRK-LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545 (1112)
Q Consensus 467 ~~~~~~~L~~~l~~~l~~-~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LI 545 (1112)
.+|+.++|++.+...|+. +||..|+|+|.++|+.++.|+|+|+++|||+|||++|++|++.. ...+||
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-----------~g~~lv 70 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-----------NGLTVV 70 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS-----------SSEEEE
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh-----------CCCEEE
Confidence 578999999999999998 99999999999999999999999999999999999999999842 347899
Q ss_pred EccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHH---HH-hcCCeEEEeCchHHHHHHHhcCCcccccCCceEE
Q 001261 546 MAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQIS---EL-KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYL 621 (1112)
Q Consensus 546 l~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~---~l-~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~v 621 (1112)
|+|+++|+.|+...+..+ ++.+..++++........ .+ ...++|+|+||++|...... ......++.+|
T Consensus 71 i~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~---~~l~~~~~~~v 143 (523)
T 1oyw_A 71 VSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFL---EHLAHWNPVLL 143 (523)
T ss_dssp ECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHH---HHHTTSCEEEE
T ss_pred ECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHH---HHHhhCCCCEE
Confidence 999999999999888764 788888888887665432 22 34589999999998532111 01234679999
Q ss_pred EeccchhhhccC--ChhHHHHHH--HhcCCCCcEEEEeccccHHHHHHHHHhc--CCCeEEEEcCcccccCCccEEEEec
Q 001261 622 VMDEADRMFDMG--FEPQITRIV--QNIRPDRQTVLFSATFPRQVEILARKVL--NKPVEIQVGGRSVVNKDITQLVEVR 695 (1112)
Q Consensus 622 ViDEah~~~~~g--f~~~i~~il--~~~~~~~q~il~SAT~~~~~~~l~~~~~--~~p~~i~i~~~~~~~~~i~q~~~~~ 695 (1112)
||||||++.+|| |.+.+..+. ....+..++|+||||+++.+...+...+ .+|..+ +.. ....++. +.+.
T Consensus 144 ViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~-~~~--~~r~~l~--~~v~ 218 (523)
T 1oyw_A 144 AVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISS--FDRPNIR--YMLM 218 (523)
T ss_dssp EESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEE-ECC--CCCTTEE--EEEE
T ss_pred EEeCccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEE-eCC--CCCCceE--EEEE
Confidence 999999999988 766665542 2233678999999999988755444333 455433 322 2223333 3333
Q ss_pred ccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCccc
Q 001261 696 PESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA 775 (1112)
Q Consensus 696 ~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~ 775 (1112)
....+...++.+|... ..+++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|.+|..+|||||++++
T Consensus 219 ~~~~~~~~l~~~l~~~-~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~ 297 (523)
T 1oyw_A 219 EKFKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFG 297 (523)
T ss_dssp ECSSHHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSC
T ss_pred eCCCHHHHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhh
Confidence 4456777788877653 456999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHH
Q 001261 776 RGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVK 831 (1112)
Q Consensus 776 ~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~ 831 (1112)
+|||+|+|++||+|++|.+++.|+||+||+||.|..|.|++|+++.|...+..++.
T Consensus 298 ~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 298 MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp TTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred CCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999877665555443
|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-46 Score=452.20 Aligned_cols=373 Identities=17% Similarity=0.228 Sum_probs=288.6
Q ss_pred cccccccccccchHHhhcCHHHHHHHHhhcCcee-ccCCCCCcccccccCCCCHHHHHHHH--------HCCCCCChHHH
Q 001261 424 YQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKI-HGKDVPKPIKTWHQTGLTSKIMETIR--------KLNYEKPMPIQ 494 (1112)
Q Consensus 424 ~~~~~k~f~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~p~pi~~~~~~~L~~~l~~~l~--------~~~~~~pt~iQ 494 (1112)
+.++-+.++...+.+..++.+++......+...+ .|.. +. +.+..++. .+|| .|||+|
T Consensus 22 ~~~~~~~in~~~~~~~~lsd~el~~~t~~~~~~~~~g~~-------ld-----~~l~ea~a~vrea~~r~lG~-~pt~VQ 88 (844)
T 1tf5_A 22 YEKIANDIDAIRGDYENLSDDALKHKTIEFKERLEKGAT-------TD-----DLLVEAFAVVREASRRVTGM-FPFKVQ 88 (844)
T ss_dssp HHHHHHHHHHTTHHHHTCCHHHHHHHHHHHHHHHHTTCC-------HH-----HHHHHHHHHHHHHHHHHHSC-CCCHHH
T ss_pred HHHHHHHHHhhhHHHHhCCHHHHHHHHHHHHHHHhcCCC-------hH-----HHHHHHHHHHHHHHHHHcCC-CCcHHH
Confidence 4556666677778899999999987777665433 2221 21 22222222 5899 999999
Q ss_pred HHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEE
Q 001261 495 AQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPV 574 (1112)
Q Consensus 495 ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~ 574 (1112)
..++|.++.|+ |+.++||+|||++|++|++.+.+. |+.|+||+||++||.|++.++..++..+|+++.++
T Consensus 89 ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~--------g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i 158 (844)
T 1tf5_A 89 LMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT--------GKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLN 158 (844)
T ss_dssp HHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEEC
T ss_pred HHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEE
Confidence 99999999999 999999999999999999955432 56899999999999999999999999999999999
Q ss_pred eCCCChHHHHHHHhcCCeEEEeCchHH-HHHHHhcC---CcccccCCceEEEeccchhhh-ccC---------------C
Q 001261 575 YGGSGVAQQISELKRGTEIVVCTPGRM-IDILCTSG---GKITNLRRVTYLVMDEADRMF-DMG---------------F 634 (1112)
Q Consensus 575 ~gg~~~~~~~~~l~~~~~IvV~Tp~~L-~~~l~~~~---~~~~~l~~i~~vViDEah~~~-~~g---------------f 634 (1112)
+||.+...+. +..+++|+|+||++| .++|..+- .....++.+.++||||||+|| |++ |
T Consensus 159 ~gg~~~~~r~--~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~ 236 (844)
T 1tf5_A 159 LNSMSKDEKR--EAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKL 236 (844)
T ss_dssp CTTSCHHHHH--HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHH
T ss_pred eCCCCHHHHH--HhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchhH
Confidence 9999865543 334699999999999 77776542 123467899999999999998 775 5
Q ss_pred hhHHHHHHHhcCC---------CCcEE-----------------EEeccccHHH---HHH--HHHhcC-CCeEEE-----
Q 001261 635 EPQITRIVQNIRP---------DRQTV-----------------LFSATFPRQV---EIL--ARKVLN-KPVEIQ----- 677 (1112)
Q Consensus 635 ~~~i~~il~~~~~---------~~q~i-----------------l~SAT~~~~~---~~l--~~~~~~-~p~~i~----- 677 (1112)
...+..|+..+++ .+|++ |||||++..+ ... +..++. ++..+.
T Consensus 237 ~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v 316 (844)
T 1tf5_A 237 YVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQV 316 (844)
T ss_dssp HHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEE
T ss_pred HHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCee
Confidence 6788999999873 68888 9999987533 322 223332 221111
Q ss_pred --Ec-----------------------------Ccccc-----------------------------------------c
Q 001261 678 --VG-----------------------------GRSVV-----------------------------------------N 685 (1112)
Q Consensus 678 --i~-----------------------------~~~~~-----------------------------------------~ 685 (1112)
+. ..... +
T Consensus 317 ~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~IP 396 (844)
T 1tf5_A 317 VIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIP 396 (844)
T ss_dssp EEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEECC
T ss_pred EEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEEec
Confidence 00 00000 0
Q ss_pred --CCc-c---EEEEecccchhHHHHHHHHHhhh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHH
Q 001261 686 --KDI-T---QLVEVRPESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTIS 758 (1112)
Q Consensus 686 --~~i-~---q~~~~~~~~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~ 758 (1112)
..+ . +.+.+.....|+..|+..|.... ...++||||+|+..++.|+..|...|+++.+|||++.+.++..+..
T Consensus 397 tn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ 476 (844)
T 1tf5_A 397 TNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEE 476 (844)
T ss_dssp CSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTT
T ss_pred CCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHH
Confidence 000 0 11233455678888888887643 4568999999999999999999999999999999998888876666
Q ss_pred HhhcCCccEEEecCcccccCCCC--------CccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCcc
Q 001261 759 DFKSNVCNLLIATSVAARGLDVK--------ELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823 (1112)
Q Consensus 759 ~F~~g~~~VLVaT~v~~~GlDi~--------~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~ 823 (1112)
.|+.| .|||||++|+||+||+ ++.+||||++|.+...|+||+|||||.|.+|.+++|++..|.
T Consensus 477 ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 477 AGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp TTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred cCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 66655 6999999999999999 889999999999999999999999999999999999998775
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-45 Score=471.52 Aligned_cols=330 Identities=18% Similarity=0.219 Sum_probs=262.5
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEE
Q 001261 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (1112)
Q Consensus 467 ~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl 546 (1112)
..|..++++..+...+...++..|+|+|.++|+.++.|+++|++|+||||||++|++|++..+.. ++++||+
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~--------g~rvlvl 233 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN--------KQRVIYT 233 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT--------TCEEEEE
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc--------CCeEEEE
Confidence 35666777776666666667778999999999999999999999999999999999999988743 6789999
Q ss_pred ccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccc
Q 001261 547 APTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEA 626 (1112)
Q Consensus 547 ~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEa 626 (1112)
+||++|+.|++..+..++. .+.+++|+... ..+++|+||||++|.+++.... ..+.++++||||||
T Consensus 234 ~PtraLa~Q~~~~l~~~~~----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~---~~l~~l~lVVIDEa 299 (1108)
T 3l9o_A 234 SPIKALSNQKYRELLAEFG----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGS---EVMREVAWVIFDEV 299 (1108)
T ss_dssp ESSHHHHHHHHHHHHHHTS----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCS---SHHHHEEEEEEETG
T ss_pred cCcHHHHHHHHHHHHHHhC----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCc---cccccCCEEEEhhh
Confidence 9999999999999998765 46667887753 3568999999999999987753 35788999999999
Q ss_pred hhhhccCChhHHHHHHHhcCCCCcEEEEeccccHH--HHHHHHHhcCCCeEEEEcCcccccCCccEEEEe---------c
Q 001261 627 DRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQ--VEILARKVLNKPVEIQVGGRSVVNKDITQLVEV---------R 695 (1112)
Q Consensus 627 h~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~--~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~---------~ 695 (1112)
|+|++++|...+..++..+++..|+|+||||+|+. +..++..+...|+.+....... ..+.+++.. .
T Consensus 300 H~l~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp--~pl~~~~~~~~~~~~~~~v 377 (1108)
T 3l9o_A 300 HYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP--TPLQHYLFPAHGDGIYLVV 377 (1108)
T ss_dssp GGTTSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCS--SCEEEEEEETTSSCCEEEE
T ss_pred hhccccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc--ccceEEEeecCCcceeeee
Confidence 99999999999999999999999999999999874 4466666677776554432211 111111110 0
Q ss_pred cc----------------------------------------------chhHHHHHHHHHhhhcCCeEEEEeCCHHHHHH
Q 001261 696 PE----------------------------------------------SDRFLRLLELLGEWYEKGKILIFVHSQEKCDA 729 (1112)
Q Consensus 696 ~~----------------------------------------------~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~ 729 (1112)
.. ...+..++..+.. ...+++||||+++..|+.
T Consensus 378 d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~-~~~~~vIVF~~sr~~~e~ 456 (1108)
T 3l9o_A 378 DEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK-KKYNPVIVFSFSKRDCEE 456 (1108)
T ss_dssp ETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHH-TTCCCEEEEESCHHHHHH
T ss_pred ccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHh-cCCCCEEEEeCcHHHHHH
Confidence 00 1222233333333 234699999999999999
Q ss_pred HHHHHHhcCCC---------------------------------------eeeecCCCCHHHHHHHHHHhhcCCccEEEe
Q 001261 730 LFRDLLKHGYP---------------------------------------CLSLHGAKDQTDRESTISDFKSNVCNLLIA 770 (1112)
Q Consensus 730 l~~~L~~~g~~---------------------------------------~~~ihg~~~~~~R~~~~~~F~~g~~~VLVa 770 (1112)
++..|...++. +.++||+|++.+|..++..|.+|.++||||
T Consensus 457 la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVA 536 (1108)
T 3l9o_A 457 LALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFA 536 (1108)
T ss_dssp HHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEE
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEE
Confidence 99988653222 789999999999999999999999999999
Q ss_pred cCcccccCCCCCccEEEEeCCC--------CCHhHHHHHhcccCCCC--CccEEEEEecCC
Q 001261 771 TSVAARGLDVKELELVINFDAP--------NHYEDYVHRVGRTGRAG--RKGCAITFISEE 821 (1112)
Q Consensus 771 T~v~~~GlDi~~v~~VI~~d~p--------~s~~~y~QriGR~gR~G--~~g~~i~~~~~~ 821 (1112)
|+++++|||+|++++||+++.| .++..|+||+|||||.| ..|.||+++++.
T Consensus 537 T~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 537 TETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp ESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred CcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 9999999999999999987663 47788999999999999 689999888765
|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-43 Score=426.78 Aligned_cols=368 Identities=19% Similarity=0.226 Sum_probs=254.6
Q ss_pred chHHhhcCHHHHHHHHhhcCceeccCCCCCcccccccCCCCHHHHHHH-----HHCCCCCChHHHHHHHHHHHcCCCEEE
Q 001261 435 VKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETI-----RKLNYEKPMPIQAQALPVIMSGRDCIG 509 (1112)
Q Consensus 435 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~p~pi~~~~~~~L~~~l~~~l-----~~~~~~~pt~iQ~~ai~~il~g~dvii 509 (1112)
.+.+..++.+++......+...+.... ++.++ |+. ....+ ..+|+ .|||+|..++|.++.|+ |+
T Consensus 24 e~~~~~lsd~eL~~kt~~fk~rl~~g~------~ld~~-lpe-afA~vrea~~R~lg~-~p~~VQ~~~i~~ll~G~--Ia 92 (853)
T 2fsf_A 24 EPEMEKLSDEELKGKTAEFRARLEKGE------VLENL-IPE-AFAVVREASKRVFGM-RHFDVQLLGGMVLNERC--IA 92 (853)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHTTC------CHHHH-HHH-HHHHHHHHHHHHHSC-CCCHHHHHHHHHHHSSE--EE
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHcCC------Chhhh-hHH-HHHHHHHHHHHHcCC-CCChHHHhhcccccCCe--ee
Confidence 345778888888766655543332211 12221 222 22222 23664 89999999999999998 99
Q ss_pred EcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhc
Q 001261 510 VAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKR 589 (1112)
Q Consensus 510 ~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~ 589 (1112)
.++||||||++|++|++.+... |+.++||+||++||.|++.++..++..+|+++.+++||.+.. ...+..
T Consensus 93 em~TGsGKTlaf~LP~l~~~l~--------g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~--~r~~~~ 162 (853)
T 2fsf_A 93 EMRTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAP--AKREAY 162 (853)
T ss_dssp ECCTTSCHHHHHHHHHHHHHTT--------SSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHH--HHHHHH
T ss_pred eecCCchHHHHHHHHHHHHHHc--------CCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHH--HHHHhc
Confidence 9999999999999999966432 568999999999999999999999999999999999999864 344455
Q ss_pred CCeEEEeCchHH-HHHHHhcC---CcccccCCceEEEeccchhhh-ccC---------------ChhHHHHHHHhcCC--
Q 001261 590 GTEIVVCTPGRM-IDILCTSG---GKITNLRRVTYLVMDEADRMF-DMG---------------FEPQITRIVQNIRP-- 647 (1112)
Q Consensus 590 ~~~IvV~Tp~~L-~~~l~~~~---~~~~~l~~i~~vViDEah~~~-~~g---------------f~~~i~~il~~~~~-- 647 (1112)
+++|+|||||+| .++|..+- .....++.+.++||||||+|+ +++ |...+..|+..++.
T Consensus 163 ~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~ 242 (853)
T 2fsf_A 163 AADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIRQE 242 (853)
T ss_dssp HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC----------------------
T ss_pred CCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhchhhh
Confidence 799999999999 78887542 112457899999999999998 554 56778888888864
Q ss_pred ------------------CCcEE------------------------EEeccccHHHHHH-----HHHhcC---------
Q 001261 648 ------------------DRQTV------------------------LFSATFPRQVEIL-----ARKVLN--------- 671 (1112)
Q Consensus 648 ------------------~~q~i------------------------l~SAT~~~~~~~l-----~~~~~~--------- 671 (1112)
.+|++ +||||++..+..+ +..++.
T Consensus 243 ~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~d 322 (853)
T 2fsf_A 243 KEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKD 322 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHHHHHHHHHHhhcCccceeec
Confidence 46654 8999986422211 111111
Q ss_pred ------------------------CC----eEEEEcCcccccCCcc----------------------------------
Q 001261 672 ------------------------KP----VEIQVGGRSVVNKDIT---------------------------------- 689 (1112)
Q Consensus 672 ------------------------~p----~~i~i~~~~~~~~~i~---------------------------------- 689 (1112)
.+ ..+.+...+.....|.
T Consensus 323 ~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l~vv 402 (853)
T 2fsf_A 323 GEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTV 402 (853)
T ss_dssp ----------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCCHHHHHHHHCCEEE
T ss_pred CcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCCCCchhHHHHHHHHhCCcEE
Confidence 01 1111111111111111
Q ss_pred -------------EEEEecccchhHHHHHHHHHhhhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHH
Q 001261 690 -------------QLVEVRPESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRES 755 (1112)
Q Consensus 690 -------------q~~~~~~~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~ 755 (1112)
+.+.+.....|+..++..|..... +.++||||+|+..++.|+..|...|+++.+|||++.+.++..
T Consensus 403 ~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~i 482 (853)
T 2fsf_A 403 VVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAI 482 (853)
T ss_dssp ECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHH
T ss_pred EcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHH
Confidence 112334556788889888876543 458999999999999999999999999999999999888888
Q ss_pred HHHHhhcCCccEEEecCcccccCCCCCc-------------------------------------cEEEEeCCCCCHhHH
Q 001261 756 TISDFKSNVCNLLIATSVAARGLDVKEL-------------------------------------ELVINFDAPNHYEDY 798 (1112)
Q Consensus 756 ~~~~F~~g~~~VLVaT~v~~~GlDi~~v-------------------------------------~~VI~~d~p~s~~~y 798 (1112)
+...|+.| .|+|||++|+||+||+.. .+||+|++|.+...|
T Consensus 483 ia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy 560 (853)
T 2fsf_A 483 VAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRID 560 (853)
T ss_dssp HHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHH
T ss_pred HHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHH
Confidence 88899888 699999999999999974 699999999999999
Q ss_pred HHHhcccCCCCCccEEEEEecCCccCc
Q 001261 799 VHRVGRTGRAGRKGCAITFISEEDAKY 825 (1112)
Q Consensus 799 ~QriGR~gR~G~~g~~i~~~~~~d~~~ 825 (1112)
+||+|||||.|.+|.+++|++..|..+
T Consensus 561 ~qr~GRTGRqGd~G~s~~fls~eD~l~ 587 (853)
T 2fsf_A 561 NQLRGRSGRQGDAGSSRFYLSMEDALM 587 (853)
T ss_dssp HHHHTTSSGGGCCEEEEEEEETTSGGG
T ss_pred HhhccccccCCCCeeEEEEecccHHHH
Confidence 999999999999999999999877543
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-42 Score=436.72 Aligned_cols=337 Identities=19% Similarity=0.296 Sum_probs=266.7
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEE
Q 001261 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPV-IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGL 544 (1112)
Q Consensus 466 i~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~-il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~L 544 (1112)
..+|.+++|++.+.+.+..+||..|+|+|.++|+. +..++++|++||||||||++|.+|++..+... +.++|
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~il 79 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN-------GGKAI 79 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-------CSEEE
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC-------CCeEE
Confidence 35799999999999999999999999999999999 78999999999999999999999999887642 56899
Q ss_pred EEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEec
Q 001261 545 IMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (1112)
Q Consensus 545 Il~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViD 624 (1112)
|++|+++||.|++..++.+ ..+|+.+..++|+....... ...++|+||||++|..++.... ..+.++++||||
T Consensus 80 ~i~P~r~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~---~~l~~~~~vIiD 152 (715)
T 2va8_A 80 YVTPLRALTNEKYLTFKDW-ELIGFKVAMTSGDYDTDDAW---LKNYDIIITTYEKLDSLWRHRP---EWLNEVNYFVLD 152 (715)
T ss_dssp EECSCHHHHHHHHHHHGGG-GGGTCCEEECCSCSSSCCGG---GGGCSEEEECHHHHHHHHHHCC---GGGGGEEEEEEC
T ss_pred EEeCcHHHHHHHHHHHHHh-hcCCCEEEEEeCCCCCchhh---cCCCCEEEEcHHHHHHHHhCCh---hHhhccCEEEEe
Confidence 9999999999999999644 45689999999987654431 2368999999999999887642 347899999999
Q ss_pred cchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccC---------CccEEEEec
Q 001261 625 EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNK---------DITQLVEVR 695 (1112)
Q Consensus 625 Eah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~---------~i~q~~~~~ 695 (1112)
|||.+.+.++...+..++..++ +.|+|+||||+++ ...++..+ ..++ +.....+++.. .....+.+.
T Consensus 153 E~H~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~~l-~~~~-~~~~~r~~~l~~~~~~~~~~~~~~~~~~~ 228 (715)
T 2va8_A 153 ELHYLNDPERGPVVESVTIRAK-RRNLLALSATISN-YKQIAKWL-GAEP-VATNWRPVPLIEGVIYPERKKKEYNVIFK 228 (715)
T ss_dssp SGGGGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHHHH-TCEE-EECCCCSSCEEEEEEEECSSTTEEEEEET
T ss_pred chhhcCCcccchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHHHh-CCCc-cCCCCCCCCceEEEEecCCcccceeeecC
Confidence 9999998889989998888887 7899999999985 34555544 3222 11111111100 000011111
Q ss_pred c--------cchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcC-----------------------------
Q 001261 696 P--------ESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHG----------------------------- 738 (1112)
Q Consensus 696 ~--------~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g----------------------------- 738 (1112)
. .......+...+. ..+++||||+++..++.++..|....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 305 (715)
T 2va8_A 229 DNTTKKVHGDDAIIAYTLDSLS---KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKE 305 (715)
T ss_dssp TSCEEEEESSSHHHHHHHHHHT---TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHH
T ss_pred cchhhhcccchHHHHHHHHHHh---cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccH
Confidence 1 1233333333332 46899999999999999999998642
Q ss_pred -------CCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEE----eC-------CCCCHhHHHH
Q 001261 739 -------YPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN----FD-------APNHYEDYVH 800 (1112)
Q Consensus 739 -------~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~----~d-------~p~s~~~y~Q 800 (1112)
+.+.++||+|++.+|..+++.|.+|.++|||||+++++|||+|++.+||+ || .|.+..+|+|
T Consensus 306 ~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Q 385 (715)
T 2va8_A 306 LLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQ 385 (715)
T ss_dssp HHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHH
T ss_pred HHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHH
Confidence 35899999999999999999999999999999999999999999999999 99 8999999999
Q ss_pred HhcccCCCC--CccEEEEEecCCcc
Q 001261 801 RVGRTGRAG--RKGCAITFISEEDA 823 (1112)
Q Consensus 801 riGR~gR~G--~~g~~i~~~~~~d~ 823 (1112)
|+|||||.| ..|.||+|+++.+.
T Consensus 386 r~GRaGR~g~~~~G~~~~l~~~~~~ 410 (715)
T 2va8_A 386 MSGRAGRPGFDQIGESIVVVRDKED 410 (715)
T ss_dssp HHTTBCCTTTCSCEEEEEECSCGGG
T ss_pred HhhhcCCCCCCCCceEEEEeCCchH
Confidence 999999988 47999999987653
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-43 Score=428.04 Aligned_cols=331 Identities=20% Similarity=0.276 Sum_probs=206.0
Q ss_pred CCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001261 486 NYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 486 ~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
+...|+|+|.++|+.++.|+++|++++||||||++|++|++..+...+ .+.++++||||||++|+.||+..+..++.
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 80 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHHFE 80 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc---ccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 446899999999999999999999999999999999999999887643 23377899999999999999999999999
Q ss_pred hcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHH-HHHHh
Q 001261 566 VMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQIT-RIVQN 644 (1112)
Q Consensus 566 ~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~-~il~~ 644 (1112)
..++.+..++|+.....+...+..+++|+|+||++|.+++.... ...+..+++|||||||++.++++...+. .++..
T Consensus 81 ~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~--~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~ 158 (556)
T 4a2p_A 81 RQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT--LTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 158 (556)
T ss_dssp GGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSS--CCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHH
T ss_pred ccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCc--ccccccCCEEEEECCcccCCcchHHHHHHHHHHh
Confidence 88999999999998777767777779999999999999886532 2367889999999999998876433332 22221
Q ss_pred ----cCCCCcEEEEeccccH-----------HHHHHHHHh------------------cCCCeEEEEcCcccccCC----
Q 001261 645 ----IRPDRQTVLFSATFPR-----------QVEILARKV------------------LNKPVEIQVGGRSVVNKD---- 687 (1112)
Q Consensus 645 ----~~~~~q~il~SAT~~~-----------~~~~l~~~~------------------~~~p~~i~i~~~~~~~~~---- 687 (1112)
..+..|+|+||||++. .+..+...+ ...|....+.........
T Consensus 159 ~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (556)
T 4a2p_A 159 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAI 238 (556)
T ss_dssp HHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHH
T ss_pred hhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHH
Confidence 1466899999999853 122222211 112211111000000000
Q ss_pred -----------------ccEEE----------------------------------------------------------
Q 001261 688 -----------------ITQLV---------------------------------------------------------- 692 (1112)
Q Consensus 688 -----------------i~q~~---------------------------------------------------------- 692 (1112)
+....
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 318 (556)
T 4a2p_A 239 ISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 318 (556)
T ss_dssp HHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00000
Q ss_pred -----------------------------------------------EecccchhHHHHHHHHHhhh---cCCeEEEEeC
Q 001261 693 -----------------------------------------------EVRPESDRFLRLLELLGEWY---EKGKILIFVH 722 (1112)
Q Consensus 693 -----------------------------------------------~~~~~~~k~~~ll~~l~~~~---~~~~vLIF~~ 722 (1112)
.......|+..|+.+|...+ ...++||||+
T Consensus 319 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~ 398 (556)
T 4a2p_A 319 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 398 (556)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEES
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEc
Confidence 00002446666777776543 4579999999
Q ss_pred CHHHHHHHHHHHHhc------------CCCeeeecCCCCHHHHHHHHHHhhc-CCccEEEecCcccccCCCCCccEEEEe
Q 001261 723 SQEKCDALFRDLLKH------------GYPCLSLHGAKDQTDRESTISDFKS-NVCNLLIATSVAARGLDVKELELVINF 789 (1112)
Q Consensus 723 s~~~~~~l~~~L~~~------------g~~~~~ihg~~~~~~R~~~~~~F~~-g~~~VLVaT~v~~~GlDi~~v~~VI~~ 789 (1112)
++..++.|+..|... |..+..+||+|++.+|..+++.|++ |.++|||||+++++|||+|+|++||+|
T Consensus 399 ~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~ 478 (556)
T 4a2p_A 399 TRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLY 478 (556)
T ss_dssp SHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEE
T ss_pred cHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEe
Confidence 999999999999775 5566677888999999999999999 999999999999999999999999999
Q ss_pred CCCCCHhHHHHHhcccCCCCCccEEEEEecCCcc
Q 001261 790 DAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823 (1112)
Q Consensus 790 d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~ 823 (1112)
|+|+++..|+||+|| ||. +.|.||+|+++.+.
T Consensus 479 d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~ 510 (556)
T 4a2p_A 479 EYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 510 (556)
T ss_dssp TCCSCHHHHHHC----------CCEEEEESCHHH
T ss_pred CCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcch
Confidence 999999999999999 999 78999999987654
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-42 Score=437.75 Aligned_cols=335 Identities=21% Similarity=0.280 Sum_probs=270.1
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEE
Q 001261 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPV-IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (1112)
Q Consensus 468 ~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~-il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl 546 (1112)
+|.+++|++.+.+.|..+||..|+|+|.++|+. ++.++++|++||||||||++|.+|++..+... +.++||+
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~~l~i 74 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-------GGKAVYI 74 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-------CSEEEEE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-------CCEEEEE
Confidence 589999999999999999999999999999998 88999999999999999999999999887642 5789999
Q ss_pred ccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccc
Q 001261 547 APTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEA 626 (1112)
Q Consensus 547 ~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEa 626 (1112)
+|+++||.|++..+..+. .+|+.+..++|+...... ....++|+||||++|..++.... ..+.++++||||||
T Consensus 75 ~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~---~~l~~~~~vIiDE~ 147 (720)
T 2zj8_A 75 VPLKALAEEKFQEFQDWE-KIGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGS---SWIKDVKILVADEI 147 (720)
T ss_dssp CSSGGGHHHHHHHTGGGG-GGTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTC---TTGGGEEEEEEETG
T ss_pred cCcHHHHHHHHHHHHHHH-hcCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcCh---hhhhcCCEEEEECC
Confidence 999999999999996554 468999999997654332 12368999999999988887632 34788999999999
Q ss_pred hhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCC---ccEEEEecc-----cc
Q 001261 627 DRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKD---ITQLVEVRP-----ES 698 (1112)
Q Consensus 627 h~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~---i~q~~~~~~-----~~ 698 (1112)
|.+.++++...+..++..++.+.|+|+||||+++ ...++.. +..+. +.....+.+... ....+.+.. ..
T Consensus 148 H~l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~~-l~~~~-~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~ 224 (720)
T 2zj8_A 148 HLIGSRDRGATLEVILAHMLGKAQIIGLSATIGN-PEELAEW-LNAEL-IVSDWRPVKLRRGVFYQGFVTWEDGSIDRFS 224 (720)
T ss_dssp GGGGCTTTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHHH-TTEEE-EECCCCSSEEEEEEEETTEEEETTSCEEECS
T ss_pred cccCCCcccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHHH-hCCcc-cCCCCCCCcceEEEEeCCeeeccccchhhhh
Confidence 9999989999999999988888999999999986 3445544 33221 111111111000 000111111 12
Q ss_pred hhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhc---------------------------------CCCeeeec
Q 001261 699 DRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH---------------------------------GYPCLSLH 745 (1112)
Q Consensus 699 ~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~---------------------------------g~~~~~ih 745 (1112)
.....+...+. ..+++||||+++..|+.++..|... ...+.++|
T Consensus 225 ~~~~~~~~~~~---~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h 301 (720)
T 2zj8_A 225 SWEELVYDAIR---KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHH 301 (720)
T ss_dssp STTHHHHHHHH---TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEEC
T ss_pred HHHHHHHHHHh---CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeec
Confidence 33334444443 4689999999999999999998753 13589999
Q ss_pred CCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEE----eC----CCCCHhHHHHHhcccCCCC--CccEEE
Q 001261 746 GAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN----FD----APNHYEDYVHRVGRTGRAG--RKGCAI 815 (1112)
Q Consensus 746 g~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~----~d----~p~s~~~y~QriGR~gR~G--~~g~~i 815 (1112)
|+|++.+|..+++.|++|.++|||||+++++|||+|++.+||+ || .|.+..+|+||+|||||.| ..|.||
T Consensus 302 ~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~ 381 (720)
T 2zj8_A 302 AGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGI 381 (720)
T ss_dssp TTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEE
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEE
Confidence 9999999999999999999999999999999999999999998 77 5899999999999999988 579999
Q ss_pred EEecCCc
Q 001261 816 TFISEED 822 (1112)
Q Consensus 816 ~~~~~~d 822 (1112)
+|+++.+
T Consensus 382 ~l~~~~~ 388 (720)
T 2zj8_A 382 IVSTSDD 388 (720)
T ss_dssp EECSSSC
T ss_pred EEecCcc
Confidence 9998776
|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-42 Score=416.85 Aligned_cols=325 Identities=19% Similarity=0.248 Sum_probs=260.9
Q ss_pred HCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001261 484 KLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 484 ~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
.+|+ .|||+|..++|.++.|+ |+.++||+|||++|++|++.+.+. |+.|+||+||++||.|++.++..+
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~--------g~~v~VvTpTreLA~Qdae~m~~l 175 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA--------GNGVHIVTVNDYLAKRDSEWMGRV 175 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT--------TSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh--------CCCeEEEeCCHHHHHHHHHHHHHH
Confidence 4888 99999999999999998 999999999999999999865442 567999999999999999999999
Q ss_pred hhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHH-HHHHHhcC---CcccccCCceEEEeccchhhh-c-------
Q 001261 564 AKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM-IDILCTSG---GKITNLRRVTYLVMDEADRMF-D------- 631 (1112)
Q Consensus 564 ~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L-~~~l~~~~---~~~~~l~~i~~vViDEah~~~-~------- 631 (1112)
+..+|+++.+++||.+.... .+..+++|+|+||++| .++|..+- .....++.+.++||||||+|| |
T Consensus 176 ~~~lGLsv~~i~gg~~~~~r--~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLi 253 (922)
T 1nkt_A 176 HRFLGLQVGVILATMTPDER--RVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLI 253 (922)
T ss_dssp HHHTTCCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEE
T ss_pred HhhcCCeEEEEeCCCCHHHH--HHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCcccee
Confidence 99999999999999986443 3344699999999999 78886542 123567889999999999998 4
Q ss_pred --------cCChhHHHHHHHhcC---------CCCcEE-----------------EEeccccHH---HHHH--HHHhcC-
Q 001261 632 --------MGFEPQITRIVQNIR---------PDRQTV-----------------LFSATFPRQ---VEIL--ARKVLN- 671 (1112)
Q Consensus 632 --------~gf~~~i~~il~~~~---------~~~q~i-----------------l~SAT~~~~---~~~l--~~~~~~- 671 (1112)
++|...+..|+..++ +.+|++ +||||++.. +... +..++.
T Consensus 254 iSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~ 333 (922)
T 1nkt_A 254 ISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSR 333 (922)
T ss_dssp EEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCB
T ss_pred ecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhc
Confidence 357789999999997 678998 999998753 3222 222322
Q ss_pred C-------CeEEEEcCc-----------------------------ccccCCcc--------------------------
Q 001261 672 K-------PVEIQVGGR-----------------------------SVVNKDIT-------------------------- 689 (1112)
Q Consensus 672 ~-------p~~i~i~~~-----------------------------~~~~~~i~-------------------------- 689 (1112)
+ +..+.+... +.....|.
T Consensus 334 d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~ 413 (922)
T 1nkt_A 334 DKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELH 413 (922)
T ss_dssp TTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHH
T ss_pred ccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHH
Confidence 1 111111100 00000011
Q ss_pred ---------------------EEEEecccchhHHHHHHHHHhhhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCC
Q 001261 690 ---------------------QLVEVRPESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGA 747 (1112)
Q Consensus 690 ---------------------q~~~~~~~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~ 747 (1112)
+.++......|+..++..|..... +.++||||+|+..++.|+..|...|+++.+|||+
T Consensus 414 ~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak 493 (922)
T 1nkt_A 414 EIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAK 493 (922)
T ss_dssp HHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSS
T ss_pred HHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCC
Confidence 012334456788888888876544 4589999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCc--------------------------------------------
Q 001261 748 KDQTDRESTISDFKSNVCNLLIATSVAARGLDVKEL-------------------------------------------- 783 (1112)
Q Consensus 748 ~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v-------------------------------------------- 783 (1112)
+.+.++..+.+.|+.| .|+|||++|+||+||+.+
T Consensus 494 ~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (922)
T 1nkt_A 494 YHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEA 571 (922)
T ss_dssp CHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred hhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhh
Confidence 9888887788888877 699999999999999975
Q ss_pred --------cEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCcc
Q 001261 784 --------ELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823 (1112)
Q Consensus 784 --------~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~ 823 (1112)
.+||+|+.|.+...|+|++||+||.|.+|.+++|++..|.
T Consensus 572 ~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 572 KEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred hHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 5999999999999999999999999999999999998775
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-42 Score=423.09 Aligned_cols=331 Identities=23% Similarity=0.290 Sum_probs=233.1
Q ss_pred CCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhc
Q 001261 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM 567 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~ 567 (1112)
.+|+|+|.++|+.++.|+++|++++||||||++|++|++..+...+ .+.++++||||||++|+.||+..+..++...
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 79 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---CGQKGKVVFFANQIPVYEQQATVFSRYFERL 79 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc---cCCCCEEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 3699999999999999999999999999999999999999987653 2347789999999999999999999999988
Q ss_pred CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhH-HHHHHHhc-
Q 001261 568 GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQ-ITRIVQNI- 645 (1112)
Q Consensus 568 ~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~-i~~il~~~- 645 (1112)
++.+..++|+.....+...+..+++|+|+||++|..++.... ...+.++++|||||||++.+.+.... +..++...
T Consensus 80 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~--~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~ 157 (555)
T 3tbk_A 80 GYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGA--IPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKL 157 (555)
T ss_dssp TCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSS--SCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHT
T ss_pred CcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCc--ccccccCCEEEEECccccCCcchHHHHHHHHHHhhh
Confidence 999999999997776666666779999999999999886542 23678899999999999987653222 22333222
Q ss_pred ----CCCCcEEEEeccccHH-----------HHHHHHHhcCCCeEEEEcCc-----ccccCCccEEEEe-----------
Q 001261 646 ----RPDRQTVLFSATFPRQ-----------VEILARKVLNKPVEIQVGGR-----SVVNKDITQLVEV----------- 694 (1112)
Q Consensus 646 ----~~~~q~il~SAT~~~~-----------~~~l~~~~~~~p~~i~i~~~-----~~~~~~i~q~~~~----------- 694 (1112)
.+..|+|+||||++.. +..+. ..+..+........ ............+
T Consensus 158 ~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
T 3tbk_A 158 GESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLC-AALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCI 236 (555)
T ss_dssp SSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHH-HHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHH
T ss_pred ccccCCCCeEEEEecCcccCccccHHHHHHHHHHHH-HhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHH
Confidence 2567999999998542 11111 11221111111100 0000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 001261 695 -------------------------------------------------------------------------------- 694 (1112)
Q Consensus 695 -------------------------------------------------------------------------------- 694 (1112)
T Consensus 237 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 316 (555)
T 3tbk_A 237 ISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALII 316 (555)
T ss_dssp HHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence
Q ss_pred --------------------------------------------------cccchhHHHHHHHHHhhh---cCCeEEEEe
Q 001261 695 --------------------------------------------------RPESDRFLRLLELLGEWY---EKGKILIFV 721 (1112)
Q Consensus 695 --------------------------------------------------~~~~~k~~~ll~~l~~~~---~~~~vLIF~ 721 (1112)
.....|+..|..+|.... ..+++||||
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~ 396 (555)
T 3tbk_A 317 SEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFV 396 (555)
T ss_dssp HHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred hhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEe
Confidence 012346666666776543 347999999
Q ss_pred CCHHHHHHHHHHHHhcC------------CCeeeecCCCCHHHHHHHHHHhhc-CCccEEEecCcccccCCCCCccEEEE
Q 001261 722 HSQEKCDALFRDLLKHG------------YPCLSLHGAKDQTDRESTISDFKS-NVCNLLIATSVAARGLDVKELELVIN 788 (1112)
Q Consensus 722 ~s~~~~~~l~~~L~~~g------------~~~~~ihg~~~~~~R~~~~~~F~~-g~~~VLVaT~v~~~GlDi~~v~~VI~ 788 (1112)
+++..++.|+..|...+ ..+..+||+|++.+|..+++.|++ |.++|||||+++++|||+|+|++||+
T Consensus 397 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~ 476 (555)
T 3tbk_A 397 KTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVIL 476 (555)
T ss_dssp SSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEE
T ss_pred CcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEE
Confidence 99999999999998763 344556669999999999999999 99999999999999999999999999
Q ss_pred eCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCch
Q 001261 789 FDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYS 826 (1112)
Q Consensus 789 ~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~ 826 (1112)
||+|+++..|+||+|| ||. ..|.||+|+++.+....
T Consensus 477 ~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~ 512 (555)
T 3tbk_A 477 YEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEK 512 (555)
T ss_dssp ESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHH
T ss_pred eCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHH
Confidence 9999999999999999 998 79999999988765444
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-42 Score=447.26 Aligned_cols=373 Identities=24% Similarity=0.304 Sum_probs=287.3
Q ss_pred HCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001261 484 KLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 484 ~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
.+|| .|||+|.++||.++.|+|+|++|+||||||++|+++++..+. .++++|||+||++||.|++..+..|
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~--------~~~~~Lil~PtreLa~Q~~~~l~~l 144 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR--------KGKKSALVFPTVTLVKQTLERLQKL 144 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT--------TTCCEEEEESSHHHHHHHHHHHHTT
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh--------cCCeEEEEechHHHHHHHHHHHHHh
Confidence 4788 699999999999999999999999999999988888887652 3789999999999999999999998
Q ss_pred hhhcCceEEEEeCCCCh---HHHHHHHhcC-CeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchh----------h
Q 001261 564 AKVMGVRCVPVYGGSGV---AQQISELKRG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADR----------M 629 (1112)
Q Consensus 564 ~~~~~i~~~~~~gg~~~---~~~~~~l~~~-~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~----------~ 629 (1112)
+ ..++.+.+++||.+. ..+...+..+ ++|||+||++|++++.. ..+.++++|||||||+ |
T Consensus 145 ~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-----l~~~~l~~lViDEaH~l~~~~r~~Dr~ 218 (1104)
T 4ddu_A 145 A-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-----LSQKRFDFVFVDDVDAVLKASRNIDTL 218 (1104)
T ss_dssp S-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-----HHTSCCSEEEESCHHHHTTSSHHHHHH
T ss_pred h-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-----hcccCcCEEEEeCCCccccccccchhh
Confidence 7 778999999999988 6777888876 99999999999888753 5678899999999964 5
Q ss_pred hc-cCChhH-HHHHHHhcC-----------CCCcEEEEecc-ccHHHH-HHHHHhcCCCeEEEEcCcccccCCccEEEEe
Q 001261 630 FD-MGFEPQ-ITRIVQNIR-----------PDRQTVLFSAT-FPRQVE-ILARKVLNKPVEIQVGGRSVVNKDITQLVEV 694 (1112)
Q Consensus 630 ~~-~gf~~~-i~~il~~~~-----------~~~q~il~SAT-~~~~~~-~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~ 694 (1112)
++ +||... +..++..++ .+.|+|+|||| +|..+. .+...++. +.+........++.+.+..
T Consensus 219 L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~ 294 (1104)
T 4ddu_A 219 LMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRIS 294 (1104)
T ss_dssp HHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEES
T ss_pred hHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEe
Confidence 56 899998 899999887 88999999999 565543 23333333 3333444455566666655
Q ss_pred cccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCee-eecCCCCHHHHHHHHHHhhcCCccEEEe---
Q 001261 695 RPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCL-SLHGAKDQTDRESTISDFKSNVCNLLIA--- 770 (1112)
Q Consensus 695 ~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~-~ihg~~~~~~R~~~~~~F~~g~~~VLVa--- 770 (1112)
. .+...|+.+|.. .++++||||+++..|+.++..|...|+.+. .+|| +|.. ++.|++|.++||||
T Consensus 295 ~---~k~~~L~~ll~~--~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas 363 (1104)
T 4ddu_A 295 S---RSKEKLVELLEI--FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQA 363 (1104)
T ss_dssp C---CCHHHHHHHHHH--HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETT
T ss_pred c---CHHHHHHHHHHh--cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecC
Confidence 4 456666777766 248999999999999999999999999998 9999 2555 99999999999999
Q ss_pred -cCcccccCCCCC-ccEEEEeCCCC-------------------------------------------------------
Q 001261 771 -TSVAARGLDVKE-LELVINFDAPN------------------------------------------------------- 793 (1112)
Q Consensus 771 -T~v~~~GlDi~~-v~~VI~~d~p~------------------------------------------------------- 793 (1112)
|+++++|||||+ |++|||||+|.
T Consensus 364 ~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~ 443 (1104)
T 4ddu_A 364 YYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKE 443 (1104)
T ss_dssp THHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhh
Confidence 999999999999 99999999998
Q ss_pred -----------------CHhHHHHHhcccCCCCC----ccEEEEEecCCccCchHHHHHHHhhc--cCCCC---hhHHHH
Q 001261 794 -----------------HYEDYVHRVGRTGRAGR----KGCAITFISEEDAKYSPDLVKALELS--EQVVP---DDLKAL 847 (1112)
Q Consensus 794 -----------------s~~~y~QriGR~gR~G~----~g~~i~~~~~~d~~~~~~i~~~l~~~--~~~vp---~~l~~~ 847 (1112)
++.+|+||+|||||.|. .|.+++|+ +|...+..|.+.+... ....| .+|..+
T Consensus 444 ~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~--~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 521 (1104)
T 4ddu_A 444 MFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLLLIAEEEIIEEAEANWKEL 521 (1104)
T ss_dssp HCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC--CCHHHHHHHHHHHHHHTCCCEEEGGGCCHHHH
T ss_pred ccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEE--ecHHHHHHHHHHHhhhcccccccccccCHHHH
Confidence 77899999999999653 34555555 7888888888887632 11111 234444
Q ss_pred HHHHHHHHhhhhhcccCCCCCCCCcCCChhHHHHHHHHHHHHH
Q 001261 848 ADSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEKRKAAKKAQA 890 (1112)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~r~~~~~~~~ 890 (1112)
...+...... ..... ..+-.+-+-++++....+...+.++.
T Consensus 522 ~~~i~~~r~~-~~~~~-~~~m~~~LvIaEkPs~Ak~ia~~Lg~ 562 (1104)
T 4ddu_A 522 VHEVEESRRR-SEREL-TDTSRSLLIIVESPTKAETLSRFLGR 562 (1104)
T ss_dssp HHHHHHHHHH-HHSCC-CCCCBCEEEEESCHHHHHHHHHHHTC
T ss_pred HHHHhHHHHH-hhhhh-hHhcCCeEEEEECHHHHHHHHHHhCC
Confidence 4433322221 10000 11223445666666666655555553
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-43 Score=438.66 Aligned_cols=331 Identities=21% Similarity=0.286 Sum_probs=264.5
Q ss_pred ccccCC--CCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEE
Q 001261 468 TWHQTG--LTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545 (1112)
Q Consensus 468 ~~~~~~--L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LI 545 (1112)
+|.+++ |++.+.+.|..+||..|+|+|.++++.++.++++|++||||||||++|.+|++..+.. +.++||
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~l~ 73 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK--------GGKSLY 73 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT--------TCCEEE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh--------CCcEEE
Confidence 577788 9999999999999999999999999999999999999999999999999999988763 568999
Q ss_pred EccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEecc
Q 001261 546 MAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDE 625 (1112)
Q Consensus 546 l~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDE 625 (1112)
++|+++||.|++..++.+ ..+|+.+..++|+...... ....++|+||||++|..++.... ..+.++++|||||
T Consensus 74 i~P~r~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~---~~l~~~~~vIiDE 146 (702)
T 2p6r_A 74 VVPLRALAGEKYESFKKW-EKIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRA---SWIKAVSCLVVDE 146 (702)
T ss_dssp EESSHHHHHHHHHHHTTT-TTTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTC---SGGGGCCEEEETT
T ss_pred EeCcHHHHHHHHHHHHHH-HhcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcCh---hHHhhcCEEEEee
Confidence 999999999999999654 4468999999998765432 12368999999999998887632 3478899999999
Q ss_pred chhhhccCChhHHHHHHHhc---CCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEE------Eecc
Q 001261 626 ADRMFDMGFEPQITRIVQNI---RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLV------EVRP 696 (1112)
Q Consensus 626 ah~~~~~gf~~~i~~il~~~---~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~------~~~~ 696 (1112)
||.+.++++...+..++..+ +++.|+|+||||+++ ...++.. +..++ +.....+.+ +...+ .+..
T Consensus 147 ~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~~-l~~~~-~~~~~r~~~---l~~~~~~~~~~~~~~ 220 (702)
T 2p6r_A 147 IHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAEW-LDADY-YVSDWRPVP---LVEGVLCEGTLELFD 220 (702)
T ss_dssp GGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHHH-TTCEE-EECCCCSSC---EEEEEECSSEEEEEE
T ss_pred eeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHHH-hCCCc-ccCCCCCcc---ceEEEeeCCeeeccC
Confidence 99999988888888877665 578999999999986 4555554 44332 222222211 11111 1111
Q ss_pred cc-------hhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhc------------------------------CC
Q 001261 697 ES-------DRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH------------------------------GY 739 (1112)
Q Consensus 697 ~~-------~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~------------------------------g~ 739 (1112)
.. .....+...+. ..+++||||+++..++.++..|... ++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~---~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 297 (702)
T 2p6r_A 221 GAFSTSRRVKFEELVEECVA---ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRK 297 (702)
T ss_dssp TTEEEEEECCHHHHHHHHHH---TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHT
T ss_pred cchhhhhhhhHHHHHHHHHh---cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhc
Confidence 11 13333444432 4689999999999999999988753 24
Q ss_pred CeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEE----eC---CCCCHhHHHHHhcccCCCC--C
Q 001261 740 PCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN----FD---APNHYEDYVHRVGRTGRAG--R 810 (1112)
Q Consensus 740 ~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~----~d---~p~s~~~y~QriGR~gR~G--~ 810 (1112)
.+.++||+|++.+|..+++.|++|.++|||||+++++|||+|++.+||+ || .|.+..+|+||+||+||.| .
T Consensus 298 ~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~ 377 (702)
T 2p6r_A 298 GAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDE 377 (702)
T ss_dssp TCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCS
T ss_pred CeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCC
Confidence 6889999999999999999999999999999999999999999999999 76 7899999999999999998 4
Q ss_pred ccEEEEEecCCc
Q 001261 811 KGCAITFISEED 822 (1112)
Q Consensus 811 ~g~~i~~~~~~d 822 (1112)
.|.||+|+++.+
T Consensus 378 ~G~~~~l~~~~~ 389 (702)
T 2p6r_A 378 RGEAIIIVGKRD 389 (702)
T ss_dssp CEEEEEECCGGG
T ss_pred CceEEEEecCcc
Confidence 799999998765
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-43 Score=441.09 Aligned_cols=339 Identities=22% Similarity=0.271 Sum_probs=225.2
Q ss_pred HHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHH
Q 001261 480 ETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSD 559 (1112)
Q Consensus 480 ~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~ 559 (1112)
..|..+||..|+|+|.++|+.++.|+++|++++||||||++|++|++.++...+ .+.++++|||+||++|+.||+..
T Consensus 4 ~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~---~~~~~~~lvl~Pt~~L~~Q~~~~ 80 (696)
T 2ykg_A 4 SDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFANQIPVYEQNKSV 80 (696)
T ss_dssp ---CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC---TTCCCCEEEECSSHHHHHHHHHH
T ss_pred CcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc---cCCCCeEEEEECCHHHHHHHHHH
Confidence 456779999999999999999999999999999999999999999999887643 12347899999999999999999
Q ss_pred HHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCC-hhHH
Q 001261 560 IRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGF-EPQI 638 (1112)
Q Consensus 560 ~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf-~~~i 638 (1112)
+.+++...++.+..++||.....+...+..+++|+|+||++|.+.+.... +..+..+++|||||||++.+... ...+
T Consensus 81 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~--~~~l~~~~~vViDEaH~~~~~~~~~~i~ 158 (696)
T 2ykg_A 81 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT--IPSLSIFTLMIFDECHNTSKQHPYNMIM 158 (696)
T ss_dssp HHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTS--SCCGGGCSEEEEETGGGCSTTCHHHHHH
T ss_pred HHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCc--ccccccccEEEEeCCCcccCcccHHHHH
Confidence 99999888999999999987665666666789999999999999886532 23578899999999999875431 1111
Q ss_pred HHHHHh-----cCCCCcEEEEecccc-------HH-HHHHHH---------------------HhcCCCeEEEEcCcc--
Q 001261 639 TRIVQN-----IRPDRQTVLFSATFP-------RQ-VEILAR---------------------KVLNKPVEIQVGGRS-- 682 (1112)
Q Consensus 639 ~~il~~-----~~~~~q~il~SAT~~-------~~-~~~l~~---------------------~~~~~p~~i~i~~~~-- 682 (1112)
..++.. ..+..++|+||||+. .. +..+.. .+...|.........
T Consensus 159 ~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~ 238 (696)
T 2ykg_A 159 FNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRI 238 (696)
T ss_dssp HHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCS
T ss_pred HHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCccc
Confidence 112221 246789999999986 11 222211 111222211100000
Q ss_pred c-------c-----------------------------------------------------------------------
Q 001261 683 V-------V----------------------------------------------------------------------- 684 (1112)
Q Consensus 683 ~-------~----------------------------------------------------------------------- 684 (1112)
. .
T Consensus 239 ~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 318 (696)
T 2ykg_A 239 SDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRK 318 (696)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHH
Confidence 0 0
Q ss_pred -------------------------------cCCccEEEEe----------------cccchhHHHHHHHHHhhh---cC
Q 001261 685 -------------------------------NKDITQLVEV----------------RPESDRFLRLLELLGEWY---EK 714 (1112)
Q Consensus 685 -------------------------------~~~i~q~~~~----------------~~~~~k~~~ll~~l~~~~---~~ 714 (1112)
...+.+.+.. .....|+..|..+|.... ..
T Consensus 319 ~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~ 398 (696)
T 2ykg_A 319 YNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPE 398 (696)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTT
T ss_pred HhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCC
Confidence 0000000000 013457777777777653 45
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcC----CCeeee--------cCCCCHHHHHHHHHHhhc-CCccEEEecCcccccCCCC
Q 001261 715 GKILIFVHSQEKCDALFRDLLKHG----YPCLSL--------HGAKDQTDRESTISDFKS-NVCNLLIATSVAARGLDVK 781 (1112)
Q Consensus 715 ~~vLIF~~s~~~~~~l~~~L~~~g----~~~~~i--------hg~~~~~~R~~~~~~F~~-g~~~VLVaT~v~~~GlDi~ 781 (1112)
+++||||+++..++.|+..|...+ +.+..+ ||+|++.+|..+++.|++ |.++|||||+++++|||||
T Consensus 399 ~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip 478 (696)
T 2ykg_A 399 TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIA 478 (696)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---C
T ss_pred CcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCc
Confidence 799999999999999999999987 888888 559999999999999998 9999999999999999999
Q ss_pred CccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCc
Q 001261 782 ELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKY 825 (1112)
Q Consensus 782 ~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~ 825 (1112)
+|++||+||+|+++..|+||+|| ||. +.|.|++|++..+...
T Consensus 479 ~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~ 520 (696)
T 2ykg_A 479 QCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIE 520 (696)
T ss_dssp CCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHH
T ss_pred cCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHH
Confidence 99999999999999999999999 998 6899999998766533
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-43 Score=452.41 Aligned_cols=324 Identities=19% Similarity=0.300 Sum_probs=265.8
Q ss_pred HHHH-HCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHH
Q 001261 480 ETIR-KLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHS 558 (1112)
Q Consensus 480 ~~l~-~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~ 558 (1112)
+.+. .+||. | |+|.++||.++.|+|+|++|+||||||+ |++|++..+.. .++++|||+||++||.|++.
T Consensus 48 ~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~-------~~~~~lil~PtreLa~Q~~~ 117 (1054)
T 1gku_B 48 EFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL-------KGKRCYVIFPTSLLVIQAAE 117 (1054)
T ss_dssp HHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT-------TSCCEEEEESCHHHHHHHHH
T ss_pred HHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh-------cCCeEEEEeccHHHHHHHHH
Confidence 3343 48999 9 9999999999999999999999999998 99999888764 36899999999999999999
Q ss_pred HHHHHhhhcCc----eEEEEeCCCChHHH---HHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhc
Q 001261 559 DIRKFAKVMGV----RCVPVYGGSGVAQQ---ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD 631 (1112)
Q Consensus 559 ~~~~~~~~~~i----~~~~~~gg~~~~~~---~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~ 631 (1112)
.+..++..+++ .+.+++||.+...+ ...+.. ++|+||||++|++++.. |.++++|||||||+|++
T Consensus 118 ~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~-------L~~l~~lViDEah~~l~ 189 (1054)
T 1gku_B 118 TIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE-------LGHFDFIFVDDVDAILK 189 (1054)
T ss_dssp HHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT-------SCCCSEEEESCHHHHHT
T ss_pred HHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH-------hccCCEEEEeChhhhhh
Confidence 99999998888 89999999988764 444555 99999999999887632 66899999999999998
Q ss_pred cCChhHHHHHHHhc-----------CCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchh
Q 001261 632 MGFEPQITRIVQNI-----------RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDR 700 (1112)
Q Consensus 632 ~gf~~~i~~il~~~-----------~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k 700 (1112)
|...+..++..+ +...|+++||||+++. ..++..++.++..+.+.........+.+.+. ...+
T Consensus 190 --~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~---~~~k 263 (1054)
T 1gku_B 190 --ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAV---NDES 263 (1054)
T ss_dssp --STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEE---SCCC
T ss_pred --ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEe---chhH
Confidence 567777777665 4568999999999877 5444455554544445544555556666554 3455
Q ss_pred HHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEe----cCcccc
Q 001261 701 FLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIA----TSVAAR 776 (1112)
Q Consensus 701 ~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVa----T~v~~~ 776 (1112)
...|..++... ++++||||+++..|+.++..|... +.+..+||++. .+++.|++|.++|||| |+++++
T Consensus 264 ~~~L~~ll~~~--~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~r 335 (1054)
T 1gku_B 264 ISTLSSILEKL--GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVR 335 (1054)
T ss_dssp TTTTHHHHTTS--CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------C
T ss_pred HHHHHHHHhhc--CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEe
Confidence 56666666653 578999999999999999999988 99999999984 7889999999999999 999999
Q ss_pred cCCCCCc-cEEEEeCCC---------------------------------------------------------------
Q 001261 777 GLDVKEL-ELVINFDAP--------------------------------------------------------------- 792 (1112)
Q Consensus 777 GlDi~~v-~~VI~~d~p--------------------------------------------------------------- 792 (1112)
|||||+| ++||+|++|
T Consensus 336 GIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 415 (1054)
T 1gku_B 336 GLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVV 415 (1054)
T ss_dssp CSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSE
T ss_pred ccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccee
Confidence 9999995 999999999
Q ss_pred --------CCHhHHHHHhcccCCCCCcc--EEEEEecCCccCchHHHHHHHhh
Q 001261 793 --------NHYEDYVHRVGRTGRAGRKG--CAITFISEEDAKYSPDLVKALEL 835 (1112)
Q Consensus 793 --------~s~~~y~QriGR~gR~G~~g--~~i~~~~~~d~~~~~~i~~~l~~ 835 (1112)
.+...|+||+|||||.|..| .+++|+...+...+..|.+.+..
T Consensus 416 ~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 416 VREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp EETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred EeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 78999999999999987766 48888888888888888888874
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-41 Score=431.38 Aligned_cols=332 Identities=20% Similarity=0.265 Sum_probs=213.2
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+|+..|+|+|.++|+.++.|+++|++++||||||++|++|++.++...+ .+.++++||||||++|+.||+..+..++
T Consensus 244 ~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~---~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~ 320 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHHF 320 (797)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc---ccCCCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 5788999999999999999999999999999999999999999987643 2347789999999999999999999999
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHH-HHHH
Q 001261 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQIT-RIVQ 643 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~-~il~ 643 (1112)
...++.+..++|+.....+...+..+++|||+||++|.+++... .+..+.++++|||||||++.+.+....+. .++.
T Consensus 321 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~--~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~ 398 (797)
T 4a2q_A 321 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDG--TLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 398 (797)
T ss_dssp GGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSS--SCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHH
T ss_pred ccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhc--cccccccCCEEEEECccccCCCccHHHHHHHHHH
Confidence 98899999999999877777777788999999999999988653 22367889999999999988765333322 2222
Q ss_pred hc----CCCCcEEEEeccccH-----------HHHHHHHH------------------hcCCCeEEEEcCcccccCC---
Q 001261 644 NI----RPDRQTVLFSATFPR-----------QVEILARK------------------VLNKPVEIQVGGRSVVNKD--- 687 (1112)
Q Consensus 644 ~~----~~~~q~il~SAT~~~-----------~~~~l~~~------------------~~~~p~~i~i~~~~~~~~~--- 687 (1112)
.. .+..|+|+||||++. .+..+... ++..|....+.........
T Consensus 399 ~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 478 (797)
T 4a2q_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 478 (797)
T ss_dssp HHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHH
T ss_pred HhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHH
Confidence 21 566899999999852 22222211 1122211110000000000
Q ss_pred ------------ccE---------E--E----------------------------------------------------
Q 001261 688 ------------ITQ---------L--V---------------------------------------------------- 692 (1112)
Q Consensus 688 ------------i~q---------~--~---------------------------------------------------- 692 (1112)
+.. . .
T Consensus 479 ~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 558 (797)
T 4a2q_A 479 IISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALII 558 (797)
T ss_dssp HHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 000 0 0
Q ss_pred ------------------------------------------------EecccchhHHHHHHHHHhhh---cCCeEEEEe
Q 001261 693 ------------------------------------------------EVRPESDRFLRLLELLGEWY---EKGKILIFV 721 (1112)
Q Consensus 693 ------------------------------------------------~~~~~~~k~~~ll~~l~~~~---~~~~vLIF~ 721 (1112)
.......|+..|+.+|...+ ..+++||||
T Consensus 559 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~ 638 (797)
T 4a2q_A 559 SEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFA 638 (797)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEE
T ss_pred hccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEE
Confidence 00002346666667776532 457999999
Q ss_pred CCHHHHHHHHHHHHhc------------CCCeeeecCCCCHHHHHHHHHHhhc-CCccEEEecCcccccCCCCCccEEEE
Q 001261 722 HSQEKCDALFRDLLKH------------GYPCLSLHGAKDQTDRESTISDFKS-NVCNLLIATSVAARGLDVKELELVIN 788 (1112)
Q Consensus 722 ~s~~~~~~l~~~L~~~------------g~~~~~ihg~~~~~~R~~~~~~F~~-g~~~VLVaT~v~~~GlDi~~v~~VI~ 788 (1112)
+++..++.|+..|... |..+..+||+|++.+|..+++.|++ |.++|||||+++++|||+|+|++||+
T Consensus 639 ~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~ 718 (797)
T 4a2q_A 639 KTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL 718 (797)
T ss_dssp SSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEE
T ss_pred CcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEE
Confidence 9999999999999873 5667778999999999999999999 99999999999999999999999999
Q ss_pred eCCCCCHhHHHHHhcccCCCCCccEEEEEecCCcc
Q 001261 789 FDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823 (1112)
Q Consensus 789 ~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~ 823 (1112)
||+|+|+..|+||+|| ||. +.|.||+|++..+.
T Consensus 719 yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 719 YEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (797)
T ss_dssp ESCCSCHHHHHTC---------CCCEEEEECCHHH
T ss_pred eCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcH
Confidence 9999999999999999 999 79999999987653
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-41 Score=438.38 Aligned_cols=370 Identities=19% Similarity=0.217 Sum_probs=287.9
Q ss_pred CCCCHHHHHHHH-HCCCCCChHHHHHHHHHHHc----CC--CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEE
Q 001261 472 TGLTSKIMETIR-KLNYEKPMPIQAQALPVIMS----GR--DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGL 544 (1112)
Q Consensus 472 ~~L~~~l~~~l~-~~~~~~pt~iQ~~ai~~il~----g~--dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~L 544 (1112)
++++..+...+. .++|. |||+|.++|+.++. |+ ++|++++||||||++|+++++..+. .++++|
T Consensus 586 ~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~--------~g~~vl 656 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD--------NHKQVA 656 (1151)
T ss_dssp CCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT--------TTCEEE
T ss_pred CCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH--------hCCeEE
Confidence 445566666554 57875 79999999999986 65 9999999999999999999987754 367999
Q ss_pred EEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHH---HHHHhcC-CeEEEeCchHHHHHHHhcCCcccccCCceE
Q 001261 545 IMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ---ISELKRG-TEIVVCTPGRMIDILCTSGGKITNLRRVTY 620 (1112)
Q Consensus 545 Il~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~---~~~l~~~-~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~ 620 (1112)
|||||++||.||+..+..++..+++.+..++|+.+.... +..+..| ++|||+||+.|.. ...+.++++
T Consensus 657 vlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~--------~~~~~~l~l 728 (1151)
T 2eyq_A 657 VLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQS--------DVKFKDLGL 728 (1151)
T ss_dssp EECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHS--------CCCCSSEEE
T ss_pred EEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhC--------Cccccccce
Confidence 999999999999999999888888999998887766544 3445554 8999999986521 246789999
Q ss_pred EEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchh
Q 001261 621 LVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDR 700 (1112)
Q Consensus 621 vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k 700 (1112)
|||||||+ |......++..++...++|+||||+++....++...+.++..+. ..+.....+...+.... .
T Consensus 729 vIiDEaH~-----~g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~--~~~~~r~~i~~~~~~~~---~ 798 (1151)
T 2eyq_A 729 LIVDEEHR-----FGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIA--TPPARRLAVKTFVREYD---S 798 (1151)
T ss_dssp EEEESGGG-----SCHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECC--CCCCBCBCEEEEEEECC---H
T ss_pred EEEechHh-----cChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEe--cCCCCccccEEEEecCC---H
Confidence 99999999 34566777888888899999999998777666666555543322 12222223333333222 2
Q ss_pred HHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhc--CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccC
Q 001261 701 FLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH--GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGL 778 (1112)
Q Consensus 701 ~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~--g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~Gl 778 (1112)
......++.....++++||||+++..++.++..|... ++.+..+||+|++.+|..++..|.+|.++|||||+++++||
T Consensus 799 ~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~Gi 878 (1151)
T 2eyq_A 799 MVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGI 878 (1151)
T ss_dssp HHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGS
T ss_pred HHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeee
Confidence 2222233344445789999999999999999999987 88999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEeCC-CCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhHHHHHHHHHHHHhh
Q 001261 779 DVKELELVINFDA-PNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAKVNQ 857 (1112)
Q Consensus 779 Di~~v~~VI~~d~-p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~~~~~~~~~~~~ 857 (1112)
|||++++||++++ ++++..|+||+||+||.|+.|.||+|+.+.+. ......+.+. .+
T Consensus 879 Dip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~~-l~~~~~~rl~-------------------~i-- 936 (1151)
T 2eyq_A 879 DIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKA-MTTDAQKRLE-------------------AI-- 936 (1151)
T ss_dssp CCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGGG-SCHHHHHHHH-------------------HH--
T ss_pred cccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCccc-cCHHHHHHHH-------------------HH--
Confidence 9999999999998 56899999999999999999999998865432 2222222221 11
Q ss_pred hhhcccCCCCCCCCcCCChhHHHHHHHHHHHHHHHcCC
Q 001261 858 GLEQAHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGF 895 (1112)
Q Consensus 858 ~~~~~~~~~~~g~g~~~~~~~~~~r~~~~~~~~~~~g~ 895 (1112)
.....-|.||.++..++++|++++.++..|+|+
T Consensus 937 -----~~~~~lg~gf~ia~~dl~irg~g~~lg~~q~g~ 969 (1151)
T 2eyq_A 937 -----ASLEDLGAGFALATHDLEIRGAGELLGEEQSGS 969 (1151)
T ss_dssp -----TTCCSBSHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred -----HHhhccCCcchHHHHHhccCCCcccCCccccCC
Confidence 111223679999999999999999999999984
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-43 Score=434.16 Aligned_cols=362 Identities=18% Similarity=0.236 Sum_probs=268.9
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHcC------CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccc
Q 001261 476 SKIMETIRKLNYEKPMPIQAQALPVIMSG------RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT 549 (1112)
Q Consensus 476 ~~l~~~l~~~~~~~pt~iQ~~ai~~il~g------~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Pt 549 (1112)
..+...+..++| .||++|.++|+.|+.+ +++|++|+||||||++|++|++..+.. |.++|||+||
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~--------g~qvlvlaPt 426 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA--------GFQTAFMVPT 426 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH--------TSCEEEECSC
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCc
Confidence 345556678999 9999999999999876 699999999999999999999988754 6789999999
Q ss_pred hhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHH---HHHHhcC-CeEEEeCchHHHHHHHhcCCcccccCCceEEEecc
Q 001261 550 RELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ---ISELKRG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDE 625 (1112)
Q Consensus 550 reLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~---~~~l~~~-~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDE 625 (1112)
++||.|++..+..++..+++++.+++|+...... +..+..| ++|||+||+.|.+. ..+.++++|||||
T Consensus 427 r~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~--------~~~~~l~lVVIDE 498 (780)
T 1gm5_A 427 SILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQED--------VHFKNLGLVIIDE 498 (780)
T ss_dssp HHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHC--------CCCSCCCEEEEES
T ss_pred HHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhh--------hhccCCceEEecc
Confidence 9999999999999998889999999999887654 3445554 89999999977431 4678899999999
Q ss_pred chhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHH
Q 001261 626 ADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLL 705 (1112)
Q Consensus 626 ah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll 705 (1112)
+|++... ....+.......++|+||||+++....+ .++.+.....+...+.....+... .....+...++
T Consensus 499 aHr~g~~-----qr~~l~~~~~~~~vL~mSATp~p~tl~~--~~~g~~~~s~i~~~p~~r~~i~~~---~~~~~~~~~l~ 568 (780)
T 1gm5_A 499 QHRFGVK-----QREALMNKGKMVDTLVMSATPIPRSMAL--AFYGDLDVTVIDEMPPGRKEVQTM---LVPMDRVNEVY 568 (780)
T ss_dssp CCCC----------CCCCSSSSCCCEEEEESSCCCHHHHH--HHTCCSSCEEECCCCSSCCCCEEC---CCCSSTHHHHH
T ss_pred cchhhHH-----HHHHHHHhCCCCCEEEEeCCCCHHHHHH--HHhCCcceeeeeccCCCCcceEEE---EeccchHHHHH
Confidence 9996321 1222333445789999999987665433 333333222222222112222221 12233445566
Q ss_pred HHHHhhh-cCCeEEEEeCCH--------HHHHHHHHHHHh---cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc
Q 001261 706 ELLGEWY-EKGKILIFVHSQ--------EKCDALFRDLLK---HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV 773 (1112)
Q Consensus 706 ~~l~~~~-~~~~vLIF~~s~--------~~~~~l~~~L~~---~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v 773 (1112)
..+.... .+++++|||++. ..++.++..|.. .++.+..+||+|++.+|..+++.|++|.++|||||++
T Consensus 569 ~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~v 648 (780)
T 1gm5_A 569 EFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTV 648 (780)
T ss_dssp HHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSC
T ss_pred HHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCC
Confidence 6665544 456899999965 457788888887 4789999999999999999999999999999999999
Q ss_pred ccccCCCCCccEEEEeCCCC-CHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhHHHHHHHHH
Q 001261 774 AARGLDVKELELVINFDAPN-HYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFM 852 (1112)
Q Consensus 774 ~~~GlDi~~v~~VI~~d~p~-s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~~~~~~~ 852 (1112)
+++|||||++++||+|++|. +...|.||+||+||.|..|.||+|+++.+... ...++.+..
T Consensus 649 ie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~~-~~rl~~l~~----------------- 710 (780)
T 1gm5_A 649 IEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEA-MERLRFFTL----------------- 710 (780)
T ss_dssp CCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHH-HHHHHHHHT-----------------
T ss_pred CCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChHH-HHHHHHHHh-----------------
Confidence 99999999999999999996 68889999999999999999999987322111 111111100
Q ss_pred HHHhhhhhcccCCCCCCCCcCCChhHHHHHHHHHHHHHHHcCCCC
Q 001261 853 AKVNQGLEQAHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEE 897 (1112)
Q Consensus 853 ~~~~~~~~~~~~~~~~g~g~~~~~~~~~~r~~~~~~~~~~~g~~~ 897 (1112)
...||.+++.++++|+.++.++.+|+|+..
T Consensus 711 ---------------~~dgf~iae~dL~~Rg~gd~lG~~qsg~~~ 740 (780)
T 1gm5_A 711 ---------------NTDGFKIAEYDLKTRGPGEFFGVKQHGLSG 740 (780)
T ss_dssp ---------------CCCSHHHHHHHHHSSCCCC----CCCSSCC
T ss_pred ---------------hhccchhhHhhHhccCcchhhhhhhcCCCc
Confidence 135788888899999999999999999744
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-40 Score=424.70 Aligned_cols=312 Identities=19% Similarity=0.260 Sum_probs=252.1
Q ss_pred HCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001261 484 KLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 484 ~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
.++|. |+|+|.++|+.++.|+++|+++|||||||++|+++++..+.. +.++||++||++|+.|++..+..+
T Consensus 82 ~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~--------g~rvL~l~PtkaLa~Q~~~~l~~~ 152 (1010)
T 2xgj_A 82 TYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN--------KQRVIYTSPIKALSNQKYRELLAE 152 (1010)
T ss_dssp CCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT--------TCEEEEEESSHHHHHHHHHHHHHH
T ss_pred hCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc--------CCeEEEECChHHHHHHHHHHHHHH
Confidence 35664 999999999999999999999999999999999999987643 678999999999999999999987
Q ss_pred hhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHH
Q 001261 564 AKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ 643 (1112)
Q Consensus 564 ~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~ 643 (1112)
+. .+..++|+.... .+++|+||||++|..++.... ..+.++++|||||||+|.++++...+..++.
T Consensus 153 ~~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~---~~l~~l~lVViDEaH~l~d~~rg~~~e~il~ 218 (1010)
T 2xgj_A 153 FG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGS---EVMREVAWVIFDEVHYMRDKERGVVWEETII 218 (1010)
T ss_dssp HS----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTC---TTGGGEEEEEEETGGGGGCTTTHHHHHHHHH
T ss_pred hC----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCc---chhhcCCEEEEechhhhcccchhHHHHHHHH
Confidence 65 567788877543 358999999999998887643 4678899999999999999999999999999
Q ss_pred hcCCCCcEEEEeccccHHHH--HHHHHhcCCCeEEEEcCcccccCCccEEEEec---------cc---------------
Q 001261 644 NIRPDRQTVLFSATFPRQVE--ILARKVLNKPVEIQVGGRSVVNKDITQLVEVR---------PE--------------- 697 (1112)
Q Consensus 644 ~~~~~~q~il~SAT~~~~~~--~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~---------~~--------------- 697 (1112)
.+++..|+|+||||+|+... .++......++.+....... ..+.+.+... ..
T Consensus 219 ~l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp--~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (1010)
T 2xgj_A 219 LLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP--TPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMAS 296 (1010)
T ss_dssp HSCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCS--SCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHT
T ss_pred hcCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc--ccceEEEEecCCcceeeeeccccccchHHHHHHHHH
Confidence 99999999999999987543 33334445666554432211 1122222110 00
Q ss_pred -------------------------------chhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCC------
Q 001261 698 -------------------------------SDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYP------ 740 (1112)
Q Consensus 698 -------------------------------~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~------ 740 (1112)
...+..++..+.. ...+++||||+++..|+.++..|...++.
T Consensus 297 l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~-~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~ 375 (1010)
T 2xgj_A 297 ISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK-KKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKE 375 (1010)
T ss_dssp CC------------------------------CHHHHHHHHHHH-HTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHH
T ss_pred HhhhhcccccccccccccccccccccccccchHHHHHHHHHHHh-cCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHH
Confidence 1112223333332 13458999999999999999998765443
Q ss_pred ---------------------------------eeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEE
Q 001261 741 ---------------------------------CLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVI 787 (1112)
Q Consensus 741 ---------------------------------~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI 787 (1112)
+.++||+|++.+|..++..|++|.++|||||+++++|||+|++++||
T Consensus 376 ~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI 455 (1010)
T 2xgj_A 376 ALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVF 455 (1010)
T ss_dssp HHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEE
T ss_pred HHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEE
Confidence 78899999999999999999999999999999999999999999999
Q ss_pred E----eCC----CCCHhHHHHHhcccCCCCC--ccEEEEEecCC
Q 001261 788 N----FDA----PNHYEDYVHRVGRTGRAGR--KGCAITFISEE 821 (1112)
Q Consensus 788 ~----~d~----p~s~~~y~QriGR~gR~G~--~g~~i~~~~~~ 821 (1112)
+ ||. |.++..|+||+||+||.|. .|.||+|+++.
T Consensus 456 ~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 456 TSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp SCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred eCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 9 999 8999999999999999996 59999999865
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-40 Score=393.42 Aligned_cols=321 Identities=22% Similarity=0.305 Sum_probs=251.2
Q ss_pred CChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcC
Q 001261 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMG 568 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~ 568 (1112)
.|+|+|.++++.++.+ ++|++++||+|||++++++++..+.. .+.++||||||++|+.||+.++.+++...+
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~-------~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK-------YGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH-------SCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc-------CCCeEEEEECCHHHHHHHHHHHHHHhCcch
Confidence 6899999999999999 99999999999999999999988762 356899999999999999999999874444
Q ss_pred ceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCCC
Q 001261 569 VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD 648 (1112)
Q Consensus 569 i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~ 648 (1112)
..+..++|+........ +..+++|+|+||+.|...+.... ..+..+++|||||||++.+......+...+....+.
T Consensus 81 ~~v~~~~g~~~~~~~~~-~~~~~~ivv~T~~~l~~~~~~~~---~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~ 156 (494)
T 1wp9_A 81 EKIVALTGEKSPEERSK-AWARAKVIVATPQTIENDLLAGR---ISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKN 156 (494)
T ss_dssp GGEEEECSCSCHHHHHH-HHHHCSEEEECHHHHHHHHHTTS---CCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSS
T ss_pred hheEEeeCCcchhhhhh-hccCCCEEEecHHHHHHHHhcCC---cchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCC
Confidence 58888888887665433 33458999999999998876532 467889999999999998665555566666666788
Q ss_pred CcEEEEeccccHH---HHHHHHHhcCCCeEEEEcCcccc----cCCccEEEE----------------------------
Q 001261 649 RQTVLFSATFPRQ---VEILARKVLNKPVEIQVGGRSVV----NKDITQLVE---------------------------- 693 (1112)
Q Consensus 649 ~q~il~SAT~~~~---~~~l~~~~~~~p~~i~i~~~~~~----~~~i~q~~~---------------------------- 693 (1112)
.++|+||||++.. +..+...+...++.+........ .......+.
T Consensus 157 ~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (494)
T 1wp9_A 157 PLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAET 236 (494)
T ss_dssp CCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999743 33343333222211110000000 000000000
Q ss_pred --------------------------------------------------------------------------------
Q 001261 694 -------------------------------------------------------------------------------- 693 (1112)
Q Consensus 694 -------------------------------------------------------------------------------- 693 (1112)
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 316 (494)
T 1wp9_A 237 GLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKAS 316 (494)
T ss_dssp TSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred ccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhh
Confidence
Q ss_pred ---------------------ecccchhHHHHHHHHHhhh---cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecC---
Q 001261 694 ---------------------VRPESDRFLRLLELLGEWY---EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHG--- 746 (1112)
Q Consensus 694 ---------------------~~~~~~k~~~ll~~l~~~~---~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg--- 746 (1112)
......|+..|..+|.... ..+++||||++...++.++..|...|+.+..+||
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~ 396 (494)
T 1wp9_A 317 KEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQAS 396 (494)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSC
T ss_pred hhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEecccc
Confidence 0023456667777777653 5679999999999999999999999999999999
Q ss_pred -----CCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCC
Q 001261 747 -----AKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEE 821 (1112)
Q Consensus 747 -----~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~ 821 (1112)
+|+..+|..+++.|++|.++|||||+++++|||+|++++||+|++|+++..|+||+||+||.|+ |.+|+|+++.
T Consensus 397 ~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~ 475 (494)
T 1wp9_A 397 KENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKG 475 (494)
T ss_dssp C-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETT
T ss_pred ccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecC
Confidence 9999999999999999999999999999999999999999999999999999999999999997 9999999876
Q ss_pred c
Q 001261 822 D 822 (1112)
Q Consensus 822 d 822 (1112)
+
T Consensus 476 t 476 (494)
T 1wp9_A 476 T 476 (494)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-40 Score=425.41 Aligned_cols=332 Identities=20% Similarity=0.274 Sum_probs=212.2
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
.|+..|+|+|.++|+.++.|+++|++++||||||++|++|++.++...+ .+.++++|||+||++|+.||+..+..++
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~---~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~ 320 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHHF 320 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc---ccCCCeEEEEeCCHHHHHHHHHHHHHHh
Confidence 5678999999999999999999999999999999999999998876542 2336789999999999999999999999
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHH-HHHH
Q 001261 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQIT-RIVQ 643 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~-~il~ 643 (1112)
...++.+..++|+.....+...+..+++|||+||++|.+++... .+..+.++++|||||||++...+....+. .++.
T Consensus 321 ~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~--~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~ 398 (936)
T 4a2w_A 321 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDG--TLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 398 (936)
T ss_dssp HTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSS--SCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHH
T ss_pred cccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcC--ccccccCCCEEEEECccccCCCccHHHHHHHHHH
Confidence 98899999999999777666666667999999999999988653 22367889999999999988765322222 2222
Q ss_pred hc----CCCCcEEEEeccccH-----------HHHHHHH------------------HhcCCCeEEEEcCcccccCC---
Q 001261 644 NI----RPDRQTVLFSATFPR-----------QVEILAR------------------KVLNKPVEIQVGGRSVVNKD--- 687 (1112)
Q Consensus 644 ~~----~~~~q~il~SAT~~~-----------~~~~l~~------------------~~~~~p~~i~i~~~~~~~~~--- 687 (1112)
.. .+..|+|+||||++. .+..+.. .++..|....+.........
T Consensus 399 ~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~ 478 (936)
T 4a2w_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 478 (936)
T ss_dssp HHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHH
T ss_pred HhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHH
Confidence 21 566899999999852 2222211 12222221111000000000
Q ss_pred ---------------------ccEE--EE---------------------------------------------------
Q 001261 688 ---------------------ITQL--VE--------------------------------------------------- 693 (1112)
Q Consensus 688 ---------------------i~q~--~~--------------------------------------------------- 693 (1112)
+.+. ..
T Consensus 479 ~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i 558 (936)
T 4a2w_A 479 IISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALII 558 (936)
T ss_dssp HHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 0000 00
Q ss_pred -------------------------------------------------ecccchhHHHHHHHHHhhh---cCCeEEEEe
Q 001261 694 -------------------------------------------------VRPESDRFLRLLELLGEWY---EKGKILIFV 721 (1112)
Q Consensus 694 -------------------------------------------------~~~~~~k~~~ll~~l~~~~---~~~~vLIF~ 721 (1112)
......|+..|..+|...+ ..+++||||
T Consensus 559 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~ 638 (936)
T 4a2w_A 559 SEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFA 638 (936)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEE
T ss_pred hcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEe
Confidence 0002345566666776543 357999999
Q ss_pred CCHHHHHHHHHHHHhc------------CCCeeeecCCCCHHHHHHHHHHhhc-CCccEEEecCcccccCCCCCccEEEE
Q 001261 722 HSQEKCDALFRDLLKH------------GYPCLSLHGAKDQTDRESTISDFKS-NVCNLLIATSVAARGLDVKELELVIN 788 (1112)
Q Consensus 722 ~s~~~~~~l~~~L~~~------------g~~~~~ihg~~~~~~R~~~~~~F~~-g~~~VLVaT~v~~~GlDi~~v~~VI~ 788 (1112)
+++..++.|+..|... |..+..+||+|++.+|..+++.|++ |.++|||||+++++|||||+|++||+
T Consensus 639 ~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~ 718 (936)
T 4a2w_A 639 KTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL 718 (936)
T ss_dssp SSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEE
T ss_pred CCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEE
Confidence 9999999999999986 5666677999999999999999998 99999999999999999999999999
Q ss_pred eCCCCCHhHHHHHhcccCCCCCccEEEEEecCCcc
Q 001261 789 FDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823 (1112)
Q Consensus 789 ~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~ 823 (1112)
||+|+|+..|+||+|| ||. ..|.||+|++..+.
T Consensus 719 yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 719 YEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (936)
T ss_dssp ESCCSCSHHHHCC---------CCCEEEEESCHHH
T ss_pred eCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCH
Confidence 9999999999999999 998 68999999987543
|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=418.99 Aligned_cols=329 Identities=21% Similarity=0.297 Sum_probs=229.6
Q ss_pred CCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHH-HHHHHHHhhh
Q 001261 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQI-HSDIRKFAKV 566 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~-~~~~~~~~~~ 566 (1112)
..|+|+|.++|+.++.|+++|++++||+|||++|++|++.++...+. .+.+..+|||+||++|+.|| +..+..++..
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~--~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH--HTCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc--cCCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 36999999999999999999999999999999999999988765311 12346899999999999999 9999998765
Q ss_pred cCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcC---CcccccCCceEEEeccchhhhccCChhHHHH-HH
Q 001261 567 MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSG---GKITNLRRVTYLVMDEADRMFDMGFEPQITR-IV 642 (1112)
Q Consensus 567 ~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~---~~~~~l~~i~~vViDEah~~~~~gf~~~i~~-il 642 (1112)
++.+..++|+.........+..+++|||+||++|...+.... .....+..+++|||||||++...++...+.. ++
T Consensus 84 -~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l 162 (699)
T 4gl2_A 84 -WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYL 162 (699)
T ss_dssp -TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHH
T ss_pred -CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHH
Confidence 588999999987666556666789999999999998773221 1234678899999999999865444433333 22
Q ss_pred Hh----cC---------CCCcEEEEeccccHH-----------HHHHHHHhc------------------CCCeEEEEcC
Q 001261 643 QN----IR---------PDRQTVLFSATFPRQ-----------VEILARKVL------------------NKPVEIQVGG 680 (1112)
Q Consensus 643 ~~----~~---------~~~q~il~SAT~~~~-----------~~~l~~~~~------------------~~p~~i~i~~ 680 (1112)
.. .. +..++|+||||++.. +..+...+. ..|.......
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~ 242 (699)
T 4gl2_A 163 MQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIA 242 (699)
T ss_dssp HHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEE
T ss_pred HhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEc
Confidence 22 12 678999999999862 222222111 1221111000
Q ss_pred cccccC-----------------Cc---cEE-------------------------------------------------
Q 001261 681 RSVVNK-----------------DI---TQL------------------------------------------------- 691 (1112)
Q Consensus 681 ~~~~~~-----------------~i---~q~------------------------------------------------- 691 (1112)
...... .+ ...
T Consensus 243 ~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 322 (699)
T 4gl2_A 243 DATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDA 322 (699)
T ss_dssp C-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 00 000
Q ss_pred --------------------------EEec-------------------------ccchhHHHHHHHHHhhh---c-CCe
Q 001261 692 --------------------------VEVR-------------------------PESDRFLRLLELLGEWY---E-KGK 716 (1112)
Q Consensus 692 --------------------------~~~~-------------------------~~~~k~~~ll~~l~~~~---~-~~~ 716 (1112)
..+. ....|+..|+.+|...+ . .++
T Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~ 402 (699)
T 4gl2_A 323 YTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESAR 402 (699)
T ss_dssp HHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 0000 01122223344444432 2 679
Q ss_pred EEEEeCCHHHHHHHHHHHHhc------CCCeeeecCC--------CCHHHHHHHHHHhhcCCccEEEecCcccccCCCCC
Q 001261 717 ILIFVHSQEKCDALFRDLLKH------GYPCLSLHGA--------KDQTDRESTISDFKSNVCNLLIATSVAARGLDVKE 782 (1112)
Q Consensus 717 vLIF~~s~~~~~~l~~~L~~~------g~~~~~ihg~--------~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~ 782 (1112)
+||||+++..++.|+..|... |+.+..+||+ |++.+|..++..|++|.++|||||+++++|||+|+
T Consensus 403 ~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~ 482 (699)
T 4gl2_A 403 GIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKE 482 (699)
T ss_dssp EEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCS
T ss_pred EEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCcccc
Confidence 999999999999999999987 8999999999 99999999999999999999999999999999999
Q ss_pred ccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCc
Q 001261 783 LELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEED 822 (1112)
Q Consensus 783 v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d 822 (1112)
|++||+||+|+|+..|+||+||+||.| .+++|+...+
T Consensus 483 v~~VI~~d~p~s~~~~~Qr~GRArr~g---~~~~l~~~~~ 519 (699)
T 4gl2_A 483 CNIVIRYGLVTNEIAMVQARGRARADE---STYVLVAHSG 519 (699)
T ss_dssp CCCCEEESCCCCHHHHHHHHTTSCSSS---CEEEEEEESS
T ss_pred CCEEEEeCCCCCHHHHHHHcCCCCCCC---ceEEEEEeCC
Confidence 999999999999999999999977654 4555554433
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-39 Score=411.21 Aligned_cols=308 Identities=19% Similarity=0.244 Sum_probs=243.2
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
++| .|+|+|.++|+.++.|+++|++++||||||++|+++++..+.. ++++||++||++|+.|++..+..++
T Consensus 36 ~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~--------g~~vlvl~PtraLa~Q~~~~l~~~~ 106 (997)
T 4a4z_A 36 WPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN--------MTKTIYTSPIKALSNQKFRDFKETF 106 (997)
T ss_dssp CSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT--------TCEEEEEESCGGGHHHHHHHHHTTC
T ss_pred CCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc--------CCeEEEEeCCHHHHHHHHHHHHHHc
Confidence 455 4899999999999999999999999999999999998876543 6789999999999999999998865
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHh
Q 001261 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQN 644 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~ 644 (1112)
. ++.+..++|+.... ..++|+|+||++|..++.... ..+.++++|||||||++.+++|...+..++..
T Consensus 107 ~--~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~---~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~ 174 (997)
T 4a4z_A 107 D--DVNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGA---DLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIM 174 (997)
T ss_dssp ----CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTC---SGGGGEEEEEECCTTCCCTTCTTCCHHHHHHH
T ss_pred C--CCeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCc---hhhcCCCEEEEECcccccccchHHHHHHHHHh
Confidence 4 67888889887532 458999999999999887643 45788999999999999999999999999999
Q ss_pred cCCCCcEEEEeccccHHHHHHHHHhc---CCCeEEEEc-CcccccCCccEEE----------------------------
Q 001261 645 IRPDRQTVLFSATFPRQVEILARKVL---NKPVEIQVG-GRSVVNKDITQLV---------------------------- 692 (1112)
Q Consensus 645 ~~~~~q~il~SAT~~~~~~~l~~~~~---~~p~~i~i~-~~~~~~~~i~q~~---------------------------- 692 (1112)
+++..|+|+||||+|+.. .++..+. ..++.+... .... .+.+.+
T Consensus 175 l~~~v~iIlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~r~~---pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l 250 (997)
T 4a4z_A 175 LPQHVKFILLSATVPNTY-EFANWIGRTKQKNIYVISTPKRPV---PLEINIWAKKELIPVINQNSEFLEANFRKHKEIL 250 (997)
T ss_dssp SCTTCEEEEEECCCTTHH-HHHHHHHHHHTCCEEEEECSSCSS---CEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHH
T ss_pred cccCCCEEEEcCCCCChH-HHHHHHhcccCCceEEEecCCCCc---cceEEEecCCcchhcccchhhhhHHHHHHHHHHh
Confidence 999999999999998654 3444332 122222211 1110 011100
Q ss_pred -----------------------------------------------------------------EecccchhHHHHHHH
Q 001261 693 -----------------------------------------------------------------EVRPESDRFLRLLEL 707 (1112)
Q Consensus 693 -----------------------------------------------------------------~~~~~~~k~~~ll~~ 707 (1112)
.......++..++..
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 330 (997)
T 4a4z_A 251 NGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNY 330 (997)
T ss_dssp C-----------------------------------------------------------------CCCCTTHHHHHHHH
T ss_pred hccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHH
Confidence 001122334556666
Q ss_pred HHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCC---------------------------------------CeeeecCCC
Q 001261 708 LGEWYEKGKILIFVHSQEKCDALFRDLLKHGY---------------------------------------PCLSLHGAK 748 (1112)
Q Consensus 708 l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~---------------------------------------~~~~ihg~~ 748 (1112)
|... ..+++||||+++..|+.++..|...++ .+..+||+|
T Consensus 331 l~~~-~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl 409 (997)
T 4a4z_A 331 LRKR-ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGL 409 (997)
T ss_dssp HHHT-TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTS
T ss_pred HHhC-CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCC
Confidence 6542 356999999999999999999977655 578999999
Q ss_pred CHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCC---------CHhHHHHHhcccCCCC--CccEEEEE
Q 001261 749 DQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPN---------HYEDYVHRVGRTGRAG--RKGCAITF 817 (1112)
Q Consensus 749 ~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~---------s~~~y~QriGR~gR~G--~~g~~i~~ 817 (1112)
++.+|..++..|.+|.++|||||+++++|||+|+ ..||++++|. ++..|+||+|||||.| ..|.||++
T Consensus 410 ~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l 488 (997)
T 4a4z_A 410 LPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVM 488 (997)
T ss_dssp CHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEE
T ss_pred CHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEe
Confidence 9999999999999999999999999999999999 5555555555 9999999999999998 56777777
Q ss_pred ec
Q 001261 818 IS 819 (1112)
Q Consensus 818 ~~ 819 (1112)
+.
T Consensus 489 ~~ 490 (997)
T 4a4z_A 489 AY 490 (997)
T ss_dssp CC
T ss_pred cC
Confidence 73
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-38 Score=344.32 Aligned_cols=238 Identities=47% Similarity=0.838 Sum_probs=220.9
Q ss_pred cCHHHHHHHHhhcCceeccCCCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHH
Q 001261 441 MTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 441 ~~~~~~~~~r~~~~~~~~~~~~p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~ 520 (1112)
++.+++..++..+.+.+.|..+|.|+.+|.+++|++.+++.|..+||..|+|+|.++|+.++.|+++|+++|||||||++
T Consensus 3 ~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~ 82 (242)
T 3fe2_A 3 RTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 82 (242)
T ss_dssp ---CHHHHHHHHHTEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHH
T ss_pred CCHHHHHHHHhcCceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHH
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchH
Q 001261 521 FVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGR 600 (1112)
Q Consensus 521 ~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~ 600 (1112)
|++|++.++..++......++++|||+||++|+.|++..+..++...++.+.+++||.....+...+..+++|+|+||++
T Consensus 83 ~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~ 162 (242)
T 3fe2_A 83 YLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 162 (242)
T ss_dssp HHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHH
T ss_pred HHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHH
Confidence 99999999987665555678999999999999999999999999999999999999999999988898999999999999
Q ss_pred HHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcC
Q 001261 601 MIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGG 680 (1112)
Q Consensus 601 L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~ 680 (1112)
|.+++.... ..+.++.+|||||||+|++++|...+..++..++++.|+|+||||+|+.+..++..++.+|+.|.++.
T Consensus 163 l~~~l~~~~---~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 239 (242)
T 3fe2_A 163 LIDFLECGK---TNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGA 239 (242)
T ss_dssp HHHHHHHTS---CCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC
T ss_pred HHHHHHcCC---CCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 999987643 46889999999999999999999999999999999999999999999999999999999999988865
Q ss_pred c
Q 001261 681 R 681 (1112)
Q Consensus 681 ~ 681 (1112)
.
T Consensus 240 ~ 240 (242)
T 3fe2_A 240 L 240 (242)
T ss_dssp -
T ss_pred C
Confidence 3
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=408.13 Aligned_cols=323 Identities=16% Similarity=0.172 Sum_probs=244.7
Q ss_pred CCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchh
Q 001261 472 TGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRE 551 (1112)
Q Consensus 472 ~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptre 551 (1112)
+++++.+.+.|... +..|+|+|++++|.++.|+++|++++||||||++|++|++..+.. .++++|||+||++
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~-------~~~~vLvl~Ptre 226 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK-------RRLRTLILAPTRV 226 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-------TTCCEEEEESSHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh-------CCCeEEEEcChHH
Confidence 34444444444332 478899999899999999999999999999999999999988765 3678999999999
Q ss_pred HHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhc
Q 001261 552 LVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD 631 (1112)
Q Consensus 552 La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~ 631 (1112)
||.|++..+.. +.+.. .+.... .....+..|.++|.+.|...+... ..+.++++|||||||+| +
T Consensus 227 La~Qi~~~l~~------~~v~~-~~~~l~----~~~tp~~~i~~~t~~~l~~~l~~~----~~l~~~~~iViDEah~~-~ 290 (618)
T 2whx_A 227 VAAEMEEALRG------LPIRY-QTPAVK----SDHTGREIVDLMCHATFTTRLLSS----TRVPNYNLIVMDEAHFT-D 290 (618)
T ss_dssp HHHHHHHHTTT------SCEEE-CCTTSS----CCCCSSSCEEEEEHHHHHHHHHHC----SSCCCCSEEEEESTTCC-S
T ss_pred HHHHHHHHhcC------CceeE-ecccce----eccCCCceEEEEChHHHHHHHhcc----ccccCCeEEEEECCCCC-C
Confidence 99999987752 23321 111100 001134577888988887766543 35888999999999998 7
Q ss_pred cCChhHHHHHHHhcC-CCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHh
Q 001261 632 MGFEPQITRIVQNIR-PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGE 710 (1112)
Q Consensus 632 ~gf~~~i~~il~~~~-~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~ 710 (1112)
++|...+..|+..++ +++|+|+||||++..+..++. .++..+.+... . ....+..++..|..
T Consensus 291 ~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~-~-------------~~~~~~~ll~~l~~ 353 (618)
T 2whx_A 291 PCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIERE-I-------------PERSWNTGFDWITD 353 (618)
T ss_dssp HHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECC-C-------------CSSCCSSSCHHHHH
T ss_pred ccHHHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeeccc-C-------------CHHHHHHHHHHHHh
Confidence 778888888887775 789999999999876443222 23333332211 0 00111223333433
Q ss_pred hhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEE----
Q 001261 711 WYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELV---- 786 (1112)
Q Consensus 711 ~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~V---- 786 (1112)
..+++||||+++..|+.++..|...++.+..+||. +|..+++.|++|..+|||||+++++||||| +++|
T Consensus 354 --~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g 426 (618)
T 2whx_A 354 --YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPR 426 (618)
T ss_dssp --CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECC
T ss_pred --CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECc
Confidence 36799999999999999999999999999999984 678899999999999999999999999997 8888
Q ss_pred ----------------EEeCCCCCHhHHHHHhcccCCCCC-ccEEEEEec---CCccCchHHHHHHHhhccCCCCh
Q 001261 787 ----------------INFDAPNHYEDYVHRVGRTGRAGR-KGCAITFIS---EEDAKYSPDLVKALELSEQVVPD 842 (1112)
Q Consensus 787 ----------------I~~d~p~s~~~y~QriGR~gR~G~-~g~~i~~~~---~~d~~~~~~i~~~l~~~~~~vp~ 842 (1112)
|+|++|.+.++|+||+||+||.|. .|.||+|++ +.+...+..|...+......+|.
T Consensus 427 ~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~l~~~~~~~ 502 (618)
T 2whx_A 427 RCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPE 502 (618)
T ss_dssp EEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTT
T ss_pred ceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHhccccccCCc
Confidence 778889999999999999999965 899999998 78888888888887766666654
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=385.60 Aligned_cols=287 Identities=17% Similarity=0.178 Sum_probs=218.5
Q ss_pred CCCCChHHHHHHHHHHHcCCCE-EEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 486 NYEKPMPIQAQALPVIMSGRDC-IGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 486 ~~~~pt~iQ~~ai~~il~g~dv-ii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
|+.+|+|+|. +||.++.++++ |++++||||||++|++|++.++.. .++++|||+||++||.|++..+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~-------~~~~~lvl~Ptr~La~Q~~~~l~--- 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL-------RRLRTLILAPTRVVAAEMEEALR--- 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTT---
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh-------cCCcEEEECCCHHHHHHHHHHhc---
Confidence 6789999985 79999999988 888999999999999999987665 36789999999999999998774
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHH-
Q 001261 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ- 643 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~- 643 (1112)
++.+....+.... ....+..|.|+|++.|...+... ..|.++++|||||||++ +.++...+..+..
T Consensus 70 ---g~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~----~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~ 136 (451)
T 2jlq_A 70 ---GLPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS----TRVPNYNLIVMDEAHFT-DPCSVAARGYISTR 136 (451)
T ss_dssp ---TSCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC----SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHH
T ss_pred ---Cceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc----ccccCCCEEEEeCCccC-CcchHHHHHHHHHh
Confidence 3333222221111 11235679999999998877543 45788999999999976 4433333333322
Q ss_pred hcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCC
Q 001261 644 NIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHS 723 (1112)
Q Consensus 644 ~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s 723 (1112)
...++.|+|+||||+|..+..+ +..++..+.+.. ..+... +..++..+.. ..+++||||++
T Consensus 137 ~~~~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~-~~p~~~-------------~~~~~~~l~~--~~~~~lVF~~s 197 (451)
T 2jlq_A 137 VEMGEAAAIFMTATPPGSTDPF---PQSNSPIEDIER-EIPERS-------------WNTGFDWITD--YQGKTVWFVPS 197 (451)
T ss_dssp HHTTSCEEEEECSSCTTCCCSS---CCCSSCEEEEEC-CCCSSC-------------CSSSCHHHHH--CCSCEEEECSS
T ss_pred hcCCCceEEEEccCCCccchhh---hcCCCceEecCc-cCCchh-------------hHHHHHHHHh--CCCCEEEEcCC
Confidence 3456899999999998754322 233443333321 111000 0111223333 35799999999
Q ss_pred HHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeC-------------
Q 001261 724 QEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFD------------- 790 (1112)
Q Consensus 724 ~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d------------- 790 (1112)
+..|+.++..|...|+.+..+||.+. ..++..|++|..+|||||+++++|||||+ ++||||+
T Consensus 198 ~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~ 272 (451)
T 2jlq_A 198 IKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPE 272 (451)
T ss_dssp HHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSC
T ss_pred HHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccc
Confidence 99999999999999999999999765 57899999999999999999999999999 9999999
Q ss_pred -------CCCCHhHHHHHhcccCCCCC-ccEEEEEecC
Q 001261 791 -------APNHYEDYVHRVGRTGRAGR-KGCAITFISE 820 (1112)
Q Consensus 791 -------~p~s~~~y~QriGR~gR~G~-~g~~i~~~~~ 820 (1112)
+|.+..+|+||+||+||.|. .|.|++|+..
T Consensus 273 ~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 273 RVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred eeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99999999999999999998 8899888754
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-39 Score=402.32 Aligned_cols=338 Identities=20% Similarity=0.261 Sum_probs=253.7
Q ss_pred CCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC-CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCC
Q 001261 463 PKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG-RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGP 541 (1112)
Q Consensus 463 p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g-~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~ 541 (1112)
+.++..|..++|++.+.+.|...+ ..|+++|.++|+.++.+ ++++++|+||||||+ ++|++...... ..+.++
T Consensus 68 ~~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~---~~~~g~ 141 (773)
T 2xau_A 68 DGKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEM---PHLENT 141 (773)
T ss_dssp HSSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHC---GGGGTC
T ss_pred cCCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhcc---ccCCCc
Confidence 456789999999999999999888 78999999999988854 679999999999998 45555222111 112367
Q ss_pred cEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEE
Q 001261 542 VGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYL 621 (1112)
Q Consensus 542 ~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~v 621 (1112)
.++|++|+++||.|++..+... +++.+...+|+...... ....+++|+|+|||+|...+... ..+.++++|
T Consensus 142 ~ilvl~P~r~La~q~~~~l~~~---~~~~v~~~vG~~i~~~~--~~~~~~~I~v~T~G~l~r~l~~~----~~l~~~~~l 212 (773)
T 2xau_A 142 QVACTQPRRVAAMSVAQRVAEE---MDVKLGEEVGYSIRFEN--KTSNKTILKYMTDGMLLREAMED----HDLSRYSCI 212 (773)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH---TTCCBTTTEEEEETTEE--ECCTTCSEEEEEHHHHHHHHHHS----TTCTTEEEE
T ss_pred eEEecCchHHHHHHHHHHHHHH---hCCchhheecceecccc--ccCCCCCEEEECHHHHHHHHhhC----ccccCCCEE
Confidence 7999999999999998766443 34333333332211100 11235799999999999887653 468899999
Q ss_pred Eeccch-hhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchh
Q 001261 622 VMDEAD-RMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDR 700 (1112)
Q Consensus 622 ViDEah-~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k 700 (1112)
||||+| ++++..+...+...+....++.|+|+||||++. ..+.. ++.++..+.+.+... .+.+.+......+.
T Consensus 213 IlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~--~~l~~-~~~~~~vi~v~gr~~---pv~~~~~~~~~~~~ 286 (773)
T 2xau_A 213 ILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDA--EKFQR-YFNDAPLLAVPGRTY---PVELYYTPEFQRDY 286 (773)
T ss_dssp EECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCC--HHHHH-HTTSCCEEECCCCCC---CEEEECCSSCCSCH
T ss_pred EecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccH--HHHHH-HhcCCCcccccCccc---ceEEEEecCCchhH
Confidence 999999 477755444444444455678999999999964 34444 444444455554432 34444433334444
Q ss_pred HHHHHHHHHhh---hcCCeEEEEeCCHHHHHHHHHHHHh-----------cCCCeeeecCCCCHHHHHHHHHHhh-----
Q 001261 701 FLRLLELLGEW---YEKGKILIFVHSQEKCDALFRDLLK-----------HGYPCLSLHGAKDQTDRESTISDFK----- 761 (1112)
Q Consensus 701 ~~~ll~~l~~~---~~~~~vLIF~~s~~~~~~l~~~L~~-----------~g~~~~~ihg~~~~~~R~~~~~~F~----- 761 (1112)
...++..+... ...+++||||+++..++.++..|.. .++.+..+||+|++.+|..+++.|.
T Consensus 287 ~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~ 366 (773)
T 2xau_A 287 LDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNG 366 (773)
T ss_dssp HHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSS
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCC
Confidence 44444433332 2478999999999999999999975 4788999999999999999999999
Q ss_pred cCCccEEEecCcccccCCCCCccEEEEeCC------------------CCCHhHHHHHhcccCCCCCccEEEEEecCCc
Q 001261 762 SNVCNLLIATSVAARGLDVKELELVINFDA------------------PNHYEDYVHRVGRTGRAGRKGCAITFISEED 822 (1112)
Q Consensus 762 ~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~------------------p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d 822 (1112)
+|.++|||||+++++|||||+|.+||++++ |.+...|+||+|||||. ..|.||+|+++.+
T Consensus 367 ~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~ 444 (773)
T 2xau_A 367 RPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEA 444 (773)
T ss_dssp SCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHH
T ss_pred CCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHH
Confidence 999999999999999999999999999888 89999999999999999 7999999997643
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=415.30 Aligned_cols=341 Identities=17% Similarity=0.209 Sum_probs=258.7
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHHc-CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhH
Q 001261 474 LTSKIMETIRKLNYEKPMPIQAQALPVIMS-GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTREL 552 (1112)
Q Consensus 474 L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~-g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreL 552 (1112)
|.....+.|...+|..++|+|.++++.++. +.++|++||||||||++|.+||++++... .+.++|||+||++|
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~------~~~kavyi~P~raL 984 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS------SEGRCVYITPMEAL 984 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC------TTCCEEEECSCHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC------CCCEEEEEcChHHH
Confidence 445667777778899999999999999985 56799999999999999999999998763 35689999999999
Q ss_pred HHHHHHHHHH-HhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhc
Q 001261 553 VQQIHSDIRK-FAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD 631 (1112)
Q Consensus 553 a~Q~~~~~~~-~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~ 631 (1112)
|.|++..|.. |...+|+++..++|+...... ...+++|+||||++|..++... .....+.++++|||||+|.|.+
T Consensus 985 a~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~-~~~~~l~~v~lvViDE~H~l~d 1060 (1724)
T 4f92_B 985 AEQVYMDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRW-KQRKNVQNINLFVVDEVHLIGG 1060 (1724)
T ss_dssp HHHHHHHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTT-TTCHHHHSCSEEEECCGGGGGS
T ss_pred HHHHHHHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCc-ccccccceeeEEEeechhhcCC
Confidence 9999999976 556689999999987654322 2245899999999986666443 2334578999999999998876
Q ss_pred cCChhHHHHHHH-------hcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccch---hH
Q 001261 632 MGFEPQITRIVQ-------NIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESD---RF 701 (1112)
Q Consensus 632 ~gf~~~i~~il~-------~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~---k~ 701 (1112)
. .+..+..++. .+++..|+|+||||+++ ...++.++...+..+..-.....+..+...+....... ++
T Consensus 1061 ~-rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~ 1138 (1724)
T 4f92_B 1061 E-NGPVLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRL 1138 (1724)
T ss_dssp T-THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHH
T ss_pred C-CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhh
Confidence 3 5555554443 44678999999999986 45566665544322222222222223333333222221 11
Q ss_pred ----HHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhc----------------------------------CCCeee
Q 001261 702 ----LRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH----------------------------------GYPCLS 743 (1112)
Q Consensus 702 ----~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~----------------------------------g~~~~~ 743 (1112)
..+...+......+++||||+++..|+.++..|... ...+++
T Consensus 1139 ~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~ 1218 (1724)
T 4f92_B 1139 LSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGY 1218 (1724)
T ss_dssp HTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEE
T ss_pred hhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEE
Confidence 223445555556789999999999999888776431 245889
Q ss_pred ecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEE----eC------CCCCHhHHHHHhcccCCCCC--c
Q 001261 744 LHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN----FD------APNHYEDYVHRVGRTGRAGR--K 811 (1112)
Q Consensus 744 ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~----~d------~p~s~~~y~QriGR~gR~G~--~ 811 (1112)
+||+|++.+|..+...|++|.++|||||+++++|||+|...+||. |+ .|.++.+|+||+|||||.|. .
T Consensus 1219 hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~ 1298 (1724)
T 4f92_B 1219 LHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDE 1298 (1724)
T ss_dssp ECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSC
T ss_pred ECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCc
Confidence 999999999999999999999999999999999999999999983 32 36789999999999999986 6
Q ss_pred cEEEEEecCCccCch
Q 001261 812 GCAITFISEEDAKYS 826 (1112)
Q Consensus 812 g~~i~~~~~~d~~~~ 826 (1112)
|.||+|+.+.+..++
T Consensus 1299 G~avll~~~~~~~~~ 1313 (1724)
T 4f92_B 1299 GRCVIMCQGSKKDFF 1313 (1724)
T ss_dssp EEEEEEEEGGGHHHH
T ss_pred eEEEEEecchHHHHH
Confidence 999999887655443
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=386.10 Aligned_cols=311 Identities=16% Similarity=0.123 Sum_probs=238.5
Q ss_pred CCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhc
Q 001261 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM 567 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~ 567 (1112)
..|+|+|.++|+.++.++++|++++||||||++|+++++..+... ++++||||||++|+.||+..+..++...
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~-------~~~vlvl~P~~~L~~Q~~~~~~~~~~~~ 184 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY-------EGKILIIVPTTALTTQMADDFVDYRLFS 184 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC-------SSEEEEEESSHHHHHHHHHHHHHTTSSC
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC-------CCeEEEEECcHHHHHHHHHHHHHhhcCC
Confidence 479999999999999999999999999999999999998877541 3489999999999999999999986666
Q ss_pred CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCC
Q 001261 568 GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 647 (1112)
Q Consensus 568 ~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~ 647 (1112)
++.+..++|+.....+ +..+++|+|+||+.|... ....+.++++|||||||++.. ..+..++..+.+
T Consensus 185 ~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~------~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~ 251 (510)
T 2oca_A 185 HAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ------PKEWFSQFGMMMNDECHLATG----KSISSIISGLNN 251 (510)
T ss_dssp GGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS------CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTT
T ss_pred ccceEEEecCCccccc---cccCCcEEEEeHHHHhhc------hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhccc
Confidence 6788889998776554 456789999999976432 124577899999999999864 567888888888
Q ss_pred CCcEEEEeccccHHHHH-HHHHhcCCCeEEEEcCcc------cccCCccEEEEec---------------------ccch
Q 001261 648 DRQTVLFSATFPRQVEI-LARKVLNKPVEIQVGGRS------VVNKDITQLVEVR---------------------PESD 699 (1112)
Q Consensus 648 ~~q~il~SAT~~~~~~~-l~~~~~~~p~~i~i~~~~------~~~~~i~q~~~~~---------------------~~~~ 699 (1112)
..++|+||||+++.... +....+..+..+.+.... .....+....... ....
T Consensus 252 ~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (510)
T 2oca_A 252 CMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSK 331 (510)
T ss_dssp CCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHH
T ss_pred CcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHH
Confidence 89999999999766422 112222233322221110 0000111111100 1112
Q ss_pred hHHHHHHHHHhhhc-CC-eEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEec-Ccccc
Q 001261 700 RFLRLLELLGEWYE-KG-KILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT-SVAAR 776 (1112)
Q Consensus 700 k~~~ll~~l~~~~~-~~-~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT-~v~~~ 776 (1112)
+...+..++..... .+ .+||||+ ...++.|+..|...+..+..+||+|+..+|..++..|.+|..+||||| +++++
T Consensus 332 ~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~ 410 (510)
T 2oca_A 332 RNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST 410 (510)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc
Confidence 33334555554432 23 5566665 999999999999988899999999999999999999999999999999 99999
Q ss_pred cCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEec
Q 001261 777 GLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFIS 819 (1112)
Q Consensus 777 GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~ 819 (1112)
|||+|++++||++++|+++..|+|++||+||.|+.|.++++++
T Consensus 411 GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 411 GISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp SCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred ccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 9999999999999999999999999999999998775555554
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-37 Score=411.35 Aligned_cols=338 Identities=24% Similarity=0.313 Sum_probs=255.7
Q ss_pred CCCCChHHHHHHHHHHH-cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCC---CCCCCCcEEEEccchhHHHHHHHHHH
Q 001261 486 NYEKPMPIQAQALPVIM-SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPV---AAGDGPVGLIMAPTRELVQQIHSDIR 561 (1112)
Q Consensus 486 ~~~~pt~iQ~~ai~~il-~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~---~~~~~~~~LIl~PtreLa~Q~~~~~~ 561 (1112)
||..|+++|.+++|.++ +++++|++||||||||++|.+||+..+...... ....+.++|||+|+++||.|++..|.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 79999999999999987 578999999999999999999999998764321 12347789999999999999999999
Q ss_pred HHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHH
Q 001261 562 KFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRI 641 (1112)
Q Consensus 562 ~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~i 641 (1112)
+.+..+|++|..++|+...... ...+++|+||||+++..++ ........+..+++|||||+|.+.+ ..+..+..+
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~ll-r~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~ 230 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIIT-RKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEAL 230 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHT-TSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHH-cCCccchhhcCcCEEEEecchhcCC-ccHHHHHHH
Confidence 9999999999999998765332 1245899999999985444 3333334578999999999997765 566666555
Q ss_pred HH-------hcCCCCcEEEEeccccHHHHHHHHHhcCCC-eEEEEcCcccccCCccEEEEecccch---hHH----HHHH
Q 001261 642 VQ-------NIRPDRQTVLFSATFPRQVEILARKVLNKP-VEIQVGGRSVVNKDITQLVEVRPESD---RFL----RLLE 706 (1112)
Q Consensus 642 l~-------~~~~~~q~il~SAT~~~~~~~l~~~~~~~p-~~i~i~~~~~~~~~i~q~~~~~~~~~---k~~----~ll~ 706 (1112)
+. .+++..|+|+||||+|+ +..++.++...+ ..+.+-.....+..+.+.+....... .+. .+..
T Consensus 231 l~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (1724)
T 4f92_B 231 VARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYE 309 (1724)
T ss_dssp HHHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHH
Confidence 43 45678999999999986 455666554432 11111122222233444433222221 111 2233
Q ss_pred HHHhhhcCCeEEEEeCCHHHHHHHHHHHHhc-------------------------------------CCCeeeecCCCC
Q 001261 707 LLGEWYEKGKILIFVHSQEKCDALFRDLLKH-------------------------------------GYPCLSLHGAKD 749 (1112)
Q Consensus 707 ~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~-------------------------------------g~~~~~ihg~~~ 749 (1112)
.+......+++||||+++..|+.++..|... ...++++||+|+
T Consensus 310 ~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~ 389 (1724)
T 4f92_B 310 KIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMT 389 (1724)
T ss_dssp HHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSC
T ss_pred HHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCC
Confidence 3444445679999999999999888887542 235789999999
Q ss_pred HHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEE----eCC------CCCHhHHHHHhcccCCCCC--ccEEEEE
Q 001261 750 QTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN----FDA------PNHYEDYVHRVGRTGRAGR--KGCAITF 817 (1112)
Q Consensus 750 ~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~----~d~------p~s~~~y~QriGR~gR~G~--~g~~i~~ 817 (1112)
+.+|..+...|++|.++|||||++++.|||+|.+.+||. |++ |.++.+|+||+|||||.|. .|.+|++
T Consensus 390 ~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~ 469 (1724)
T 4f92_B 390 RVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILI 469 (1724)
T ss_dssp THHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEE
T ss_pred HHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEE
Confidence 999999999999999999999999999999999999995 544 5689999999999999874 6999999
Q ss_pred ecCCccCchHHH
Q 001261 818 ISEEDAKYSPDL 829 (1112)
Q Consensus 818 ~~~~d~~~~~~i 829 (1112)
.+..+......+
T Consensus 470 ~~~~~~~~~~~l 481 (1724)
T 4f92_B 470 TSHGELQYYLSL 481 (1724)
T ss_dssp EESTTCCHHHHH
T ss_pred ecchhHHHHHHH
Confidence 888776655444
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-39 Score=379.44 Aligned_cols=291 Identities=20% Similarity=0.218 Sum_probs=204.4
Q ss_pred HHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCC
Q 001261 500 VIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSG 579 (1112)
Q Consensus 500 ~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~ 579 (1112)
+++.|+++|++|+||||||++|++|++..+.. .++++|||+||++||.|++..+..+ ++ ....+..
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~-------~~~~~lil~Ptr~La~Q~~~~l~~~----~v--~~~~~~~- 69 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR-------RRLRTLVLAPTRVVLSEMKEAFHGL----DV--KFHTQAF- 69 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTTTS----CE--EEESSCC-
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh-------cCCeEEEEcchHHHHHHHHHHHhcC----Ce--EEecccc-
Confidence 35789999999999999999999999988765 3678999999999999999887643 22 2211111
Q ss_pred hHHHHHHHhcCCeEEEeCchHHHHHHHhc-----CCcccccCCceEEEeccchhhhccCChhHHHHHHHhc-CCCCcEEE
Q 001261 580 VAQQISELKRGTEIVVCTPGRMIDILCTS-----GGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI-RPDRQTVL 653 (1112)
Q Consensus 580 ~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~-----~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~-~~~~q~il 653 (1112)
-+|+||+++++++... ......+.++++|||||||+| +.+|...+..+...+ +...|+|+
T Consensus 70 -------------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~ 135 (440)
T 1yks_A 70 -------------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATIL 135 (440)
T ss_dssp -------------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEE
T ss_pred -------------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEE
Confidence 0366776654332211 011234788999999999998 333333333333333 36799999
Q ss_pred EeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHH
Q 001261 654 FSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRD 733 (1112)
Q Consensus 654 ~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~ 733 (1112)
||||+++.+..++.. ..++.... ...+. .....++..|.. ..+++||||+++..|+.++..
T Consensus 136 ~SAT~~~~~~~~~~~--~~~~~~~~--------------~~~~~-~~~~~~~~~l~~--~~~~~lVF~~s~~~a~~l~~~ 196 (440)
T 1yks_A 136 MTATPPGTSDEFPHS--NGEIEDVQ--------------TDIPS-EPWNTGHDWILA--DKRPTAWFLPSIRAANVMAAS 196 (440)
T ss_dssp ECSSCTTCCCSSCCC--SSCEEEEE--------------CCCCS-SCCSSSCHHHHH--CCSCEEEECSCHHHHHHHHHH
T ss_pred EeCCCCchhhhhhhc--CCCeeEee--------------eccCh-HHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHH
Confidence 999998764322211 11211110 00111 111112233333 267999999999999999999
Q ss_pred HHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEE-------------------eCCCCC
Q 001261 734 LLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN-------------------FDAPNH 794 (1112)
Q Consensus 734 L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~-------------------~d~p~s 794 (1112)
|...++.+..+|| .+|..++..|++|.++|||||+++++||||| +++||+ |++|.+
T Consensus 197 L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~ 271 (440)
T 1yks_A 197 LRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRIS 271 (440)
T ss_dssp HHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECC
T ss_pred HHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccC
Confidence 9999999999999 4688999999999999999999999999999 999996 899999
Q ss_pred HhHHHHHhcccCCC-CCccEEEEEe---cCCccCchHHHHHHHhhccCCCCh
Q 001261 795 YEDYVHRVGRTGRA-GRKGCAITFI---SEEDAKYSPDLVKALELSEQVVPD 842 (1112)
Q Consensus 795 ~~~y~QriGR~gR~-G~~g~~i~~~---~~~d~~~~~~i~~~l~~~~~~vp~ 842 (1112)
..+|+||+||+||. |..|.||+|+ ++.+...+..+...+......+|.
T Consensus 272 ~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l~~ 323 (440)
T 1yks_A 272 ASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEVRG 323 (440)
T ss_dssp HHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCCGG
T ss_pred HHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHhccccccccc
Confidence 99999999999997 6899999997 677888888887777666665554
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=375.91 Aligned_cols=289 Identities=21% Similarity=0.228 Sum_probs=221.0
Q ss_pred CChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcC
Q 001261 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMG 568 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~ 568 (1112)
.+.++|..+++.+..++++|++|+||||||++|++|++. .+.++|||+|||+||.|++..+.. .++
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~-----------~g~~vLVl~PTReLA~Qia~~l~~---~~g 282 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA-----------QGYKVLVLNPSVAATLGFGAYMSK---AHG 282 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH-----------TTCCEEEEESCHHHHHHHHHHHHH---HHS
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH-----------CCCeEEEEcchHHHHHHHHHHHHH---HhC
Confidence 344566666666678899999999999999999999885 256899999999999999886654 456
Q ss_pred ceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCCC
Q 001261 569 VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD 648 (1112)
Q Consensus 569 i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~ 648 (1112)
..+...+|+.. +..+++|+|+||++|+ .. ....+.++++||||||| +++++|...+..|+..++..
T Consensus 283 ~~vg~~vG~~~-------~~~~~~IlV~TPGrLl---~~---~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~ 348 (666)
T 3o8b_A 283 IDPNIRTGVRT-------ITTGAPVTYSTYGKFL---AD---GGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAETA 348 (666)
T ss_dssp CCCEEECSSCE-------ECCCCSEEEEEHHHHH---HT---TSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTT
T ss_pred CCeeEEECcEe-------ccCCCCEEEECcHHHH---hC---CCcccCcccEEEEccch-hcCccHHHHHHHHHHhhhhc
Confidence 67777788764 4567899999999983 22 23567889999999995 56788888899999999877
Q ss_pred Cc--EEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHH
Q 001261 649 RQ--TVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEK 726 (1112)
Q Consensus 649 ~q--~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~ 726 (1112)
+| +++||||++..+. ...|....+... .... +........ ......+++||||+++..
T Consensus 349 ~~~llil~SAT~~~~i~------~~~p~i~~v~~~---~~~~---i~~~~~~~~--------l~~~~~~~vLVFv~Tr~~ 408 (666)
T 3o8b_A 349 GARLVVLATATPPGSVT------VPHPNIEEVALS---NTGE---IPFYGKAIP--------IEAIRGGRHLIFCHSKKK 408 (666)
T ss_dssp TCSEEEEEESSCTTCCC------CCCTTEEEEECB---SCSS---EEETTEEEC--------GGGSSSSEEEEECSCHHH
T ss_pred CCceEEEECCCCCcccc------cCCcceEEEeec---ccch---hHHHHhhhh--------hhhccCCcEEEEeCCHHH
Confidence 77 7788999987321 112211111000 0000 111100000 112256899999999999
Q ss_pred HHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEE----------EeC------
Q 001261 727 CDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVI----------NFD------ 790 (1112)
Q Consensus 727 ~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI----------~~d------ 790 (1112)
++.++..|...++.+..+||+|++.+ |.++..+|||||+++++||||+ +++|| |||
T Consensus 409 ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~g 480 (666)
T 3o8b_A 409 CDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFT 480 (666)
T ss_dssp HHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCE
T ss_pred HHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccc
Confidence 99999999999999999999999864 5667779999999999999997 99998 677
Q ss_pred -----CCCCHhHHHHHhcccCCCCCccEEEEEecCCccCc--h--HHHHHHHhh
Q 001261 791 -----APNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKY--S--PDLVKALEL 835 (1112)
Q Consensus 791 -----~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~--~--~~i~~~l~~ 835 (1112)
+|.+.++|+||+||+|| |..|. |+|+++.+... + ..|.+.+..
T Consensus 481 l~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~~~l~~~~i~~~~~~ 532 (666)
T 3o8b_A 481 IETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPSGMFDSSVLCECYDA 532 (666)
T ss_dssp EEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCSSBCCHHHHHHHHHH
T ss_pred cccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhcccccHHHHHHHhcC
Confidence 89999999999999999 89999 99999887765 4 666666543
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=383.43 Aligned_cols=307 Identities=18% Similarity=0.222 Sum_probs=218.3
Q ss_pred HHHCCCC-----CChHHHH-----HHHHHHH------cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEE
Q 001261 482 IRKLNYE-----KPMPIQA-----QALPVIM------SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545 (1112)
Q Consensus 482 l~~~~~~-----~pt~iQ~-----~ai~~il------~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LI 545 (1112)
|..+||. .|||+|. ++||.++ .|+++|++++||||||++|++|++..+.. .++++||
T Consensus 203 l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~-------~~~~~li 275 (673)
T 2wv9_A 203 LYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ-------KRLRTAV 275 (673)
T ss_dssp EEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH-------TTCCEEE
T ss_pred eeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCcEEE
Confidence 3445666 8999999 9999988 89999999999999999999999988765 3678999
Q ss_pred EccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEecc
Q 001261 546 MAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDE 625 (1112)
Q Consensus 546 l~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDE 625 (1112)
|+||++||.|++..+..+ ++. ...+.... ....+.-+.+++.+.+...+... ..+.++++|||||
T Consensus 276 laPTr~La~Q~~~~l~~~----~i~--~~~~~l~~-----v~tp~~ll~~l~~~~l~~~l~~~----~~l~~l~lvViDE 340 (673)
T 2wv9_A 276 LAPTRVVAAEMAEALRGL----PVR--YLTPAVQR-----EHSGNEIVDVMCHATLTHRLMSP----LRVPNYNLFVMDE 340 (673)
T ss_dssp EESSHHHHHHHHHHTTTS----CCE--ECCC---C-----CCCSCCCEEEEEHHHHHHHHHSS----SCCCCCSEEEEES
T ss_pred EccHHHHHHHHHHHHhcC----Cee--eecccccc-----cCCHHHHHHHHHhhhhHHHHhcc----cccccceEEEEeC
Confidence 999999999999887653 332 11110000 00112234445555554433321 3678999999999
Q ss_pred chhhhccCChhHHHHHHHhc-CCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHH
Q 001261 626 ADRMFDMGFEPQITRIVQNI-RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRL 704 (1112)
Q Consensus 626 ah~~~~~gf~~~i~~il~~~-~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~l 704 (1112)
||+| +..+...+..+...+ +...|+|+||||+++.+..+... ..|+. .+.. ..+ ...+..+
T Consensus 341 aH~~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~i~-~v~~-------------~~~-~~~~~~~ 402 (673)
T 2wv9_A 341 AHFT-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT--NSPVH-DVSS-------------EIP-DRAWSSG 402 (673)
T ss_dssp TTCC-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCEE-EEEC-------------CCC-SSCCSSC
T ss_pred Cccc-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc--CCceE-EEee-------------ecC-HHHHHHH
Confidence 9997 222222333333333 36789999999998664322110 12221 1100 001 1111122
Q ss_pred HHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCcc
Q 001261 705 LELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELE 784 (1112)
Q Consensus 705 l~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~ 784 (1112)
+..|.. ..+++||||+++..++.++..|...++.+..+||. +|..++..|++|.++|||||+++++||||| ++
T Consensus 403 l~~l~~--~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~ 475 (673)
T 2wv9_A 403 FEWITD--YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-AS 475 (673)
T ss_dssp CHHHHS--CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CS
T ss_pred HHHHHh--CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-Cc
Confidence 333333 46799999999999999999999999999999994 789999999999999999999999999999 99
Q ss_pred EEEE--------------------eCCCCCHhHHHHHhcccCCC-CCccEEEEEe---cCCccCchHHHHHHHhh
Q 001261 785 LVIN--------------------FDAPNHYEDYVHRVGRTGRA-GRKGCAITFI---SEEDAKYSPDLVKALEL 835 (1112)
Q Consensus 785 ~VI~--------------------~d~p~s~~~y~QriGR~gR~-G~~g~~i~~~---~~~d~~~~~~i~~~l~~ 835 (1112)
+||| |++|.+.++|+||+||+||. |+.|.||+|+ ++.+..++..+...+..
T Consensus 476 ~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~~l 550 (673)
T 2wv9_A 476 RVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKILL 550 (673)
T ss_dssp EEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHHHH
T ss_pred EEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHHhh
Confidence 9998 67899999999999999999 7899999996 46676676666555433
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=365.16 Aligned_cols=292 Identities=22% Similarity=0.235 Sum_probs=222.0
Q ss_pred CCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhc
Q 001261 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM 567 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~ 567 (1112)
..|+|+|.++++.++.++++|++++||+|||++|+++++.. +..+||||||++|+.||+..+..|
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~-----------~~~~Lvl~P~~~L~~Q~~~~~~~~---- 156 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF---- 156 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH-----------CSCEEEEESSHHHHHHHHHHGGGG----
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEECCHHHHHHHHHHHHhC----
Confidence 37999999999999999999999999999999999998864 457999999999999999988883
Q ss_pred Cce-EEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcC
Q 001261 568 GVR-CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646 (1112)
Q Consensus 568 ~i~-~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~ 646 (1112)
++. +..++|+... .++|+|+||+.|...+.. ....+++|||||||++.+.+|.. ++..+
T Consensus 157 ~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~------~~~~~~liIvDEaH~~~~~~~~~----~~~~~- 216 (472)
T 2fwr_A 157 GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK------LGNRFMLLIFDEVHHLPAESYVQ----IAQMS- 216 (472)
T ss_dssp CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHH------HTTTCSEEEEETGGGTTSTTTHH----HHHTC-
T ss_pred CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHH------hcCCCCEEEEECCcCCCChHHHH----HHHhc-
Confidence 777 7777777642 479999999998766532 12458999999999998876643 44444
Q ss_pred CCCcEEEEeccccHH-------------------HHHHHHHhcCCCeE--EEEcCccc----------------------
Q 001261 647 PDRQTVLFSATFPRQ-------------------VEILARKVLNKPVE--IQVGGRSV---------------------- 683 (1112)
Q Consensus 647 ~~~q~il~SAT~~~~-------------------~~~l~~~~~~~p~~--i~i~~~~~---------------------- 683 (1112)
+..++|+||||++.. ...+...++..+.. +.+.....
T Consensus 217 ~~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 296 (472)
T 2fwr_A 217 IAPFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGIT 296 (472)
T ss_dssp CCSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCT
T ss_pred CCCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 467899999998731 22222222222211 11110000
Q ss_pred --ccCCccEEE---------------------EecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCC
Q 001261 684 --VNKDITQLV---------------------EVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYP 740 (1112)
Q Consensus 684 --~~~~i~q~~---------------------~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~ 740 (1112)
....+.+.+ .......|...|..+|.. ...+++||||++...++.++..| .
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~k~lvF~~~~~~~~~l~~~l-----~ 370 (472)
T 2fwr_A 297 LRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER-HRKDKIIIFTRHNELVYRISKVF-----L 370 (472)
T ss_dssp TTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH-TSSSCBCCBCSCHHHHHHHHHHT-----T
T ss_pred ccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh-CCCCcEEEEECCHHHHHHHHHHh-----C
Confidence 000000000 011234566667777766 45679999999999999999987 3
Q ss_pred eeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCc-c--EEEEE
Q 001261 741 CLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRK-G--CAITF 817 (1112)
Q Consensus 741 ~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~-g--~~i~~ 817 (1112)
+..+||+++..+|..++..|++|.++|||||+++++|||+|++++||+|++|+++..|+|++||+||.|+. + .+|.|
T Consensus 371 ~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~l 450 (472)
T 2fwr_A 371 IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYEL 450 (472)
T ss_dssp CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEE
T ss_pred cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999854 3 44556
Q ss_pred ecC
Q 001261 818 ISE 820 (1112)
Q Consensus 818 ~~~ 820 (1112)
++.
T Consensus 451 v~~ 453 (472)
T 2fwr_A 451 ISR 453 (472)
T ss_dssp EEC
T ss_pred EeC
Confidence 654
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-37 Score=366.30 Aligned_cols=281 Identities=17% Similarity=0.214 Sum_probs=205.5
Q ss_pred HHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCC
Q 001261 498 LPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGG 577 (1112)
Q Consensus 498 i~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg 577 (1112)
..++..++++|++++||||||++|++|++..+.. .++++|||+||++||.|++..+. ++.+....+.
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~-------~~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~ 81 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ-------QRLRTAVLAPTRVVAAEMAEALR------GLPVRYQTSA 81 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH-------TTCCEEEEECSHHHHHHHHHHTT------TSCEEECC--
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh-------CCCcEEEECchHHHHHHHHHHhc------CceEeEEecc
Confidence 4456678999999999999999999999988764 36789999999999999998876 3333322221
Q ss_pred CChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchh-----hhccCChhHHHHHHHhcCCCCcEE
Q 001261 578 SGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADR-----MFDMGFEPQITRIVQNIRPDRQTV 652 (1112)
Q Consensus 578 ~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~-----~~~~gf~~~i~~il~~~~~~~q~i 652 (1112)
.... -..+..|.++|.+.+...+... ..+.++++|||||||+ ++.++|...+. ..++.|+|
T Consensus 82 ~~~~-----~t~~~~i~~~~~~~l~~~l~~~----~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~-----~~~~~~~i 147 (459)
T 2z83_A 82 VQRE-----HQGNEIVDVMCHATLTHRLMSP----NRVPNYNLFVMDEAHFTDPASIAARGYIATKV-----ELGEAAAI 147 (459)
T ss_dssp -----------CCCSEEEEEHHHHHHHHHSC----C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH-----HTTSCEEE
T ss_pred cccC-----CCCCcEEEEEchHHHHHHhhcc----ccccCCcEEEEECCccCCchhhHHHHHHHHHh-----ccCCccEE
Confidence 1110 1234568889999887666542 4688999999999998 55554433322 23688999
Q ss_pred EEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHH
Q 001261 653 LFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFR 732 (1112)
Q Consensus 653 l~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~ 732 (1112)
+||||+|..+..+.. ...|+..... ... ...+..++.+|.. ..+++||||+++..|+.++.
T Consensus 148 l~SAT~~~~~~~~~~--~~~pi~~~~~--~~~-------------~~~~~~~~~~l~~--~~~~~LVF~~s~~~~~~l~~ 208 (459)
T 2z83_A 148 FMTATPPGTTDPFPD--SNAPIHDLQD--EIP-------------DRAWSSGYEWITE--YAGKTVWFVASVKMGNEIAM 208 (459)
T ss_dssp EECSSCTTCCCSSCC--CSSCEEEEEC--CCC-------------SSCCSSCCHHHHH--CCSCEEEECSCHHHHHHHHH
T ss_pred EEEcCCCcchhhhcc--CCCCeEEecc--cCC-------------cchhHHHHHHHHh--cCCCEEEEeCChHHHHHHHH
Confidence 999999876432221 1334332111 000 0111112233333 26799999999999999999
Q ss_pred HHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEE--------------------eCCC
Q 001261 733 DLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN--------------------FDAP 792 (1112)
Q Consensus 733 ~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~--------------------~d~p 792 (1112)
.|...++.+..+||. +|..++..|++|..+|||||+++++|||||+ ++||+ |++|
T Consensus 209 ~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p 283 (459)
T 2z83_A 209 CLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSP 283 (459)
T ss_dssp HHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEE
T ss_pred HHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCC
Confidence 999999999999995 6788999999999999999999999999999 99999 7799
Q ss_pred CCHhHHHHHhcccCCCCC-ccEEEEEecCC--ccCchHHH
Q 001261 793 NHYEDYVHRVGRTGRAGR-KGCAITFISEE--DAKYSPDL 829 (1112)
Q Consensus 793 ~s~~~y~QriGR~gR~G~-~g~~i~~~~~~--d~~~~~~i 829 (1112)
.+..+|+||+||+||.|. .|.||+|+++. +...+..+
T Consensus 284 ~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~~~~~~~~~~~ 323 (459)
T 2z83_A 284 ITSASAAQRRGRVGRNPNQVGDEYHYGGATSEDDSNLAHW 323 (459)
T ss_dssp CCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHH
T ss_pred CCHHHHHHhccccCCCCCCCCeEEEEEcccccchhhhhhh
Confidence 999999999999999997 99999999876 54444444
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=318.74 Aligned_cols=236 Identities=39% Similarity=0.643 Sum_probs=201.0
Q ss_pred cCceeccCCCCC--cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHh
Q 001261 453 LELKIHGKDVPK--PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIK 530 (1112)
Q Consensus 453 ~~~~~~~~~~p~--pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~ 530 (1112)
+.+.+.|...|. ++.+|.+++|++.+++.|..+||..|+|+|.++|+.++.|+++|++++||||||++|++|++.++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~ 86 (253)
T 1wrb_A 7 IPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLV 86 (253)
T ss_dssp CCCCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CceeeeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHH
Confidence 346678888887 999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCCC----CCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHH
Q 001261 531 DQPPV----AAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILC 606 (1112)
Q Consensus 531 ~~~~~----~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~ 606 (1112)
..... ....++++|||+||++|+.|++..+..++...++.+.+++||.....+...+..+++|+|+||++|.+++.
T Consensus 87 ~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~ 166 (253)
T 1wrb_A 87 CQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIE 166 (253)
T ss_dssp TTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHH
T ss_pred hhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHH
Confidence 54311 12346799999999999999999999999888999999999999988888888899999999999999887
Q ss_pred hcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhc--CC--CCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcc
Q 001261 607 TSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI--RP--DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRS 682 (1112)
Q Consensus 607 ~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~--~~--~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~ 682 (1112)
... ..+..+++|||||||+|++++|...+..++..+ +. ..|+|+||||+|+.+..++..++.+|+.+.++...
T Consensus 167 ~~~---~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~ 243 (253)
T 1wrb_A 167 KNK---ISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVG 243 (253)
T ss_dssp TTS---BCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC---
T ss_pred cCC---CChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCC
Confidence 643 467889999999999999999999999999854 33 68999999999999999999999999999888766
Q ss_pred cccCCccEE
Q 001261 683 VVNKDITQL 691 (1112)
Q Consensus 683 ~~~~~i~q~ 691 (1112)
....+|.|.
T Consensus 244 ~~~~~i~q~ 252 (253)
T 1wrb_A 244 STSDSIKQE 252 (253)
T ss_dssp ---------
T ss_pred CCcCCceec
Confidence 666666654
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-35 Score=343.18 Aligned_cols=269 Identities=20% Similarity=0.207 Sum_probs=194.8
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQ 582 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~ 582 (1112)
.|+++|++++||||||++|++|++..+.. .++++|||+||++||.|++..+. ++.+..+.|+...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~-------~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~-- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK-------KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS-- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC--------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh-------CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc--
Confidence 37899999999999999999999976654 36789999999999999987765 4455544443211
Q ss_pred HHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhc-CCCCcEEEEeccccHH
Q 001261 583 QISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI-RPDRQTVLFSATFPRQ 661 (1112)
Q Consensus 583 ~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~-~~~~q~il~SAT~~~~ 661 (1112)
.-..+..+.++|.+.+...+... ..+.++++|||||||++ +.++......+.... ++..|+|+||||+++.
T Consensus 66 ---~~~~~~~~~~~~~~~l~~~l~~~----~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~ 137 (431)
T 2v6i_A 66 ---ERTGNEIVDFMCHSTFTMKLLQG----VRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGT 137 (431)
T ss_dssp ------CCCSEEEEEHHHHHHHHHHT----CCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTC
T ss_pred ---cCCCCceEEEEchHHHHHHHhcC----ccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcc
Confidence 11234667888999887666542 35788999999999996 333444444444332 5689999999999874
Q ss_pred HHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCe
Q 001261 662 VEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPC 741 (1112)
Q Consensus 662 ~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~ 741 (1112)
+..+... ..|+. .+. .......+..++..|.. ..+++||||+++..++.++..|...++.+
T Consensus 138 ~~~~~~~--~~~i~-~~~--------------~~~~~~~~~~~~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~v 198 (431)
T 2v6i_A 138 TEAFPPS--NSPII-DEE--------------TRIPDKAWNSGYEWITE--FDGRTVWFVHSIKQGAEIGTCLQKAGKKV 198 (431)
T ss_dssp CCSSCCC--SSCCE-EEE--------------CCCCSSCCSSCCHHHHS--CSSCEEEECSSHHHHHHHHHHHHHTTCCE
T ss_pred hhhhcCC--CCcee-ecc--------------ccCCHHHHHHHHHHHHc--CCCCEEEEeCCHHHHHHHHHHHHHcCCeE
Confidence 3211100 11111 110 00011112223344444 26799999999999999999999999999
Q ss_pred eeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccE-----------------EEEeCCCCCHhHHHHHhcc
Q 001261 742 LSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELEL-----------------VINFDAPNHYEDYVHRVGR 804 (1112)
Q Consensus 742 ~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~-----------------VI~~d~p~s~~~y~QriGR 804 (1112)
..+||+ +|..++..|++|.++|||||+++++||||| +.+ ||+++.|.+..+|+||+||
T Consensus 199 ~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR 273 (431)
T 2v6i_A 199 LYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGR 273 (431)
T ss_dssp EEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTT
T ss_pred EEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhc
Confidence 999997 578899999999999999999999999999 544 6788999999999999999
Q ss_pred cCCCCC-ccEEEEEe
Q 001261 805 TGRAGR-KGCAITFI 818 (1112)
Q Consensus 805 ~gR~G~-~g~~i~~~ 818 (1112)
+||.|. .|.+++|.
T Consensus 274 ~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 274 IGRNPEKLGDIYAYS 288 (431)
T ss_dssp SSCCTTCCCCEEEEC
T ss_pred cCCCCCCCCeEEEEc
Confidence 999985 45555555
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-34 Score=309.83 Aligned_cols=216 Identities=40% Similarity=0.729 Sum_probs=187.5
Q ss_pred cCCCCCccccccc-CCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCC-C
Q 001261 459 GKDVPKPIKTWHQ-TGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPV-A 536 (1112)
Q Consensus 459 ~~~~p~pi~~~~~-~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~-~ 536 (1112)
+...|.|+.+|.+ +++++.+++.|..+||..|+|+|.++|+.++.|+++|++++||||||++|++|++.++..+... .
T Consensus 11 ~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~ 90 (228)
T 3iuy_A 11 KRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISRE 90 (228)
T ss_dssp CCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-------
T ss_pred cCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhh
Confidence 4567999999999 8999999999999999999999999999999999999999999999999999999988653211 1
Q ss_pred CCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccC
Q 001261 537 AGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLR 616 (1112)
Q Consensus 537 ~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~ 616 (1112)
...++++|||+||++|+.|++..+..+. ..++.+.+++||.....+...+..+++|+|+||++|.+++.... ..+.
T Consensus 91 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~---~~~~ 166 (228)
T 3iuy_A 91 QRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNS---VNLR 166 (228)
T ss_dssp --CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTC---CCCT
T ss_pred ccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCC---cCcc
Confidence 2357899999999999999999999986 45889999999998888888888899999999999999886543 4678
Q ss_pred CceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEE
Q 001261 617 RVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQV 678 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i 678 (1112)
++++|||||||+|++++|...+..++..++++.|+|+||||+|+.+..++..++.+|+.+.+
T Consensus 167 ~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~v 228 (228)
T 3iuy_A 167 SITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVYV 228 (228)
T ss_dssp TCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEC
T ss_pred cceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEeC
Confidence 89999999999999999999999999999999999999999999999999999999987753
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-34 Score=351.23 Aligned_cols=279 Identities=19% Similarity=0.206 Sum_probs=207.4
Q ss_pred HHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEE
Q 001261 494 QAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVP 573 (1112)
Q Consensus 494 Q~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~ 573 (1112)
|.......+.|+++|++||||||||+.++. .+.. .+.+||++||++||.|++..+..+ |+.+..
T Consensus 145 ~~~p~ar~l~rk~vlv~apTGSGKT~~al~----~l~~--------~~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~l 208 (677)
T 3rc3_A 145 NWYPDARAMQRKIIFHSGPTNSGKTYHAIQ----KYFS--------AKSGVYCGPLKLLAHEIFEKSNAA----GVPCDL 208 (677)
T ss_dssp GGCHHHHTSCCEEEEEECCTTSSHHHHHHH----HHHH--------SSSEEEEESSHHHHHHHHHHHHHT----TCCEEE
T ss_pred hhCHHHHhcCCCEEEEEcCCCCCHHHHHHH----HHHh--------cCCeEEEeCHHHHHHHHHHHHHhc----CCcEEE
Confidence 333344567899999999999999984333 3332 134599999999999999998774 788888
Q ss_pred EeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcC-CCCcEE
Q 001261 574 VYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR-PDRQTV 652 (1112)
Q Consensus 574 ~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~-~~~q~i 652 (1112)
++|+..... ..-....+++++|++.+ ..+..+++|||||||+|++.+|...+..++..++ ...+++
T Consensus 209 ltG~~~~iv--~TpGr~~~il~~T~e~~-----------~l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il 275 (677)
T 3rc3_A 209 VTGEERVTV--QPNGKQASHVSCTVEMC-----------SVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLC 275 (677)
T ss_dssp ECSSCEECC--STTCCCCSEEEEEGGGC-----------CSSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEE
T ss_pred EECCeeEEe--cCCCcccceeEecHhHh-----------hhcccCCEEEEecceecCCccchHHHHHHHHccCccceEEE
Confidence 888864410 00001246777776533 2346789999999999999999999999998887 778999
Q ss_pred EEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHH
Q 001261 653 LFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFR 732 (1112)
Q Consensus 653 l~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~ 732 (1112)
++|||.+ .+..++... ..++.+....... ........ +..+... ....||||+++..++.++.
T Consensus 276 ~~SAT~~-~i~~l~~~~-~~~~~v~~~~r~~------~l~~~~~~-------l~~l~~~--~~g~iIf~~s~~~ie~la~ 338 (677)
T 3rc3_A 276 GEPAAID-LVMELMYTT-GEEVEVRDYKRLT------PISVLDHA-------LESLDNL--RPGDCIVCFSKNDIYSVSR 338 (677)
T ss_dssp ECGGGHH-HHHHHHHHH-TCCEEEEECCCSS------CEEECSSC-------CCSGGGC--CTTEEEECSSHHHHHHHHH
T ss_pred eccchHH-HHHHHHHhc-CCceEEEEeeecc------hHHHHHHH-------HHHHHhc--CCCCEEEEcCHHHHHHHHH
Confidence 9999963 344444333 4444432211110 00000000 0111111 2345889999999999999
Q ss_pred HHHhcCCCeeeecCCCCHHHHHHHHHHhhc--CCccEEEecCcccccCCCCCccEEEEeCC--------------CCCHh
Q 001261 733 DLLKHGYPCLSLHGAKDQTDRESTISDFKS--NVCNLLIATSVAARGLDVKELELVINFDA--------------PNHYE 796 (1112)
Q Consensus 733 ~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~--g~~~VLVaT~v~~~GlDi~~v~~VI~~d~--------------p~s~~ 796 (1112)
.|...++.+..+||+|++.+|..++..|++ |.++|||||+++++|||| ++++||++++ |.+..
T Consensus 339 ~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~ 417 (677)
T 3rc3_A 339 QIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTS 417 (677)
T ss_dssp HHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHH
T ss_pred HHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHH
Confidence 999999999999999999999999999999 889999999999999999 9999999999 78999
Q ss_pred HHHHHhcccCCCCCc---cEEEEEec
Q 001261 797 DYVHRVGRTGRAGRK---GCAITFIS 819 (1112)
Q Consensus 797 ~y~QriGR~gR~G~~---g~~i~~~~ 819 (1112)
+|+||+|||||.|.. |.|++++.
T Consensus 418 ~~~QR~GRAGR~g~~g~~G~v~~l~~ 443 (677)
T 3rc3_A 418 QALQIAGRAGRFSSRFKEGEVTTMNH 443 (677)
T ss_dssp HHHHHHTTBTCTTSSCSSEEEEESST
T ss_pred HHHHHhcCCCCCCCCCCCEEEEEEec
Confidence 999999999999964 77766544
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-33 Score=306.06 Aligned_cols=210 Identities=40% Similarity=0.651 Sum_probs=193.6
Q ss_pred CCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCc
Q 001261 463 PKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPV 542 (1112)
Q Consensus 463 p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~ 542 (1112)
+.++.+|.+++|++.+++.|..+||..|+++|.++|+.++.|+++|++++||||||++|++|++..+... ..+++
T Consensus 39 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~-----~~~~~ 113 (249)
T 3ber_A 39 EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET-----PQRLF 113 (249)
T ss_dssp HHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-----CCSSC
T ss_pred ccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC-----CCCce
Confidence 4567899999999999999999999999999999999999999999999999999999999999988764 23678
Q ss_pred EEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEE
Q 001261 543 GLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLV 622 (1112)
Q Consensus 543 ~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vV 622 (1112)
+|||+||++|+.|++..+..++..+++.+.+++||.....+...+..+++|+|+||++|.+++.... ...+..+++||
T Consensus 114 ~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~--~~~l~~~~~lV 191 (249)
T 3ber_A 114 ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTK--GFNLRALKYLV 191 (249)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHST--TCCCTTCCEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCC--CcCccccCEEE
Confidence 9999999999999999999999989999999999999888888888899999999999999887532 24578899999
Q ss_pred eccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEc
Q 001261 623 MDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVG 679 (1112)
Q Consensus 623 iDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~ 679 (1112)
|||||+|++++|...+..++..+++..|+|+||||+++.+..++..++.+|+.+.++
T Consensus 192 iDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 192 MDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp ECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred EcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence 999999999999999999999999999999999999999999999999999987653
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-33 Score=318.04 Aligned_cols=214 Identities=29% Similarity=0.473 Sum_probs=187.0
Q ss_pred eeccCCCCC---cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHHHHHHHHHh
Q 001261 456 KIHGKDVPK---PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLPMLRHIK 530 (1112)
Q Consensus 456 ~~~~~~~p~---pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g--~dvii~a~TGsGKT~~~llp~l~~l~ 530 (1112)
.+.+.+.+. ++.+|.+++|++.+++.|..+||..|||+|.++||.++.| +|+|++++||||||++|++|++.++.
T Consensus 78 ~v~~~~~~~p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~ 157 (300)
T 3fmo_B 78 EVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVE 157 (300)
T ss_dssp EEECSSTTCCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred eeccCCCCCCcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhh
Confidence 344444433 4678999999999999999999999999999999999998 99999999999999999999999875
Q ss_pred cCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhc-CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcC
Q 001261 531 DQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSG 609 (1112)
Q Consensus 531 ~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~ 609 (1112)
.. ..++++|||+||++||.|++..+..++..+ ++.+.+++||....... ..+++||||||++|++++...
T Consensus 158 ~~-----~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~- 228 (300)
T 3fmo_B 158 PA-----NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKL- 228 (300)
T ss_dssp TT-----SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTT-
T ss_pred cc-----CCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhc-
Confidence 42 357899999999999999999999998765 68888888887653322 456899999999999998643
Q ss_pred CcccccCCceEEEeccchhhhc-cCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEc
Q 001261 610 GKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVG 679 (1112)
Q Consensus 610 ~~~~~l~~i~~vViDEah~~~~-~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~ 679 (1112)
....+.++.+|||||||+|++ ++|...+..|+..+++.+|+|+||||+|..+..++..++.+|+.|.+.
T Consensus 229 -~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 229 -KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp -CCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred -CCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 235688999999999999998 789999999999999999999999999999999999999999988764
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=308.50 Aligned_cols=232 Identities=34% Similarity=0.600 Sum_probs=200.1
Q ss_pred HHHHHHhhcCceeccCCCCCcccccccC----CCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHH
Q 001261 445 EVSAYRKQLELKIHGKDVPKPIKTWHQT----GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 445 ~~~~~r~~~~~~~~~~~~p~pi~~~~~~----~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~ 520 (1112)
++..+++...+.+.|..+|.|+.+|.++ +|++.+++.|..+||..|+|+|.++|+.++.|+++|++++||||||++
T Consensus 3 ~~~~~~~~~~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 3 KINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHHHHTTEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH
T ss_pred hHHHHHHhCceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHH
Confidence 4677888899999999999999999987 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH-HHHhcCCeEEEeCch
Q 001261 521 FVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI-SELKRGTEIVVCTPG 599 (1112)
Q Consensus 521 ~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~-~~l~~~~~IvV~Tp~ 599 (1112)
|++|++.++... ...++++|||+||++|+.|++..+..++...++.+.+++|+....... .....+++|+|+||+
T Consensus 83 ~~l~~l~~l~~~----~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~ 158 (245)
T 3dkp_A 83 FSIPILMQLKQP----ANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPN 158 (245)
T ss_dssp HHHHHHHHHCSC----CSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHH
T ss_pred HHHHHHHHHhhc----ccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHH
Confidence 999999988642 235789999999999999999999999998898888877765333221 122346899999999
Q ss_pred HHHHHHHhcCCcccccCCceEEEeccchhhhc---cCChhHHHHHHHhc-CCCCcEEEEeccccHHHHHHHHHhcCCCeE
Q 001261 600 RMIDILCTSGGKITNLRRVTYLVMDEADRMFD---MGFEPQITRIVQNI-RPDRQTVLFSATFPRQVEILARKVLNKPVE 675 (1112)
Q Consensus 600 ~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~---~gf~~~i~~il~~~-~~~~q~il~SAT~~~~~~~l~~~~~~~p~~ 675 (1112)
+|.+++.... ....+.++.+|||||||+|++ .+|...+..++..+ .+..|+++||||+|+.+..++..++.+|+.
T Consensus 159 ~l~~~l~~~~-~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~ 237 (245)
T 3dkp_A 159 RLIYLLKQDP-PGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVIS 237 (245)
T ss_dssp HHHHHHHSSS-CSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEE
T ss_pred HHHHHHHhCC-CCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEE
Confidence 9999887643 235688999999999999998 57888898888776 457899999999999999999999999999
Q ss_pred EEEcCc
Q 001261 676 IQVGGR 681 (1112)
Q Consensus 676 i~i~~~ 681 (1112)
+.++..
T Consensus 238 i~~~~~ 243 (245)
T 3dkp_A 238 VSIGAR 243 (245)
T ss_dssp EEECC-
T ss_pred EEeCCC
Confidence 988754
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-34 Score=350.94 Aligned_cols=308 Identities=16% Similarity=0.145 Sum_probs=191.9
Q ss_pred CCChHHHHHHHHHHHc----C-CCEEEEcCCCChHHHHHHHHHHHHHhcCCC-CCCCCCCcEEEEccchhHHHHHH-HHH
Q 001261 488 EKPMPIQAQALPVIMS----G-RDCIGVAKTGSGKTLAFVLPMLRHIKDQPP-VAAGDGPVGLIMAPTRELVQQIH-SDI 560 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~----g-~dvii~a~TGsGKT~~~llp~l~~l~~~~~-~~~~~~~~~LIl~PtreLa~Q~~-~~~ 560 (1112)
..|+|+|.++|+.++. + +++|++++||||||++++..+...+..... .....++++||||||++|+.|++ +.+
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 3699999999999886 4 568999999999999976655554443211 01124789999999999999998 666
Q ss_pred HHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcC-CcccccCCceEEEeccchhhhccCChhHHH
Q 001261 561 RKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSG-GKITNLRRVTYLVMDEADRMFDMGFEPQIT 639 (1112)
Q Consensus 561 ~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~-~~~~~l~~i~~vViDEah~~~~~gf~~~i~ 639 (1112)
..| +..+..+.++. +..+.+|+|+||++|...+.... .....+..+++|||||||++...+ ...+.
T Consensus 257 ~~~----~~~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~ 323 (590)
T 3h1t_A 257 TPF----GDARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWR 323 (590)
T ss_dssp TTT----CSSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CH
T ss_pred Hhc----chhhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHH
Confidence 654 33444444332 33568999999999987653211 112345678999999999987643 24556
Q ss_pred HHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCccc-----ccCCccE------------------------
Q 001261 640 RIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSV-----VNKDITQ------------------------ 690 (1112)
Q Consensus 640 ~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~-----~~~~i~q------------------------ 690 (1112)
.++..++ ..++|+||||+..........+++.++....-.... ....+..
T Consensus 324 ~il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (590)
T 3h1t_A 324 EILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREI 402 (590)
T ss_dssp HHHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------
T ss_pred HHHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccccc
Confidence 6777765 467999999987543333333444443221000000 0000000
Q ss_pred --EEEeccc-------chhHHHHHH----HHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCC--------CeeeecCCCC
Q 001261 691 --LVEVRPE-------SDRFLRLLE----LLGEWYEKGKILIFVHSQEKCDALFRDLLKHGY--------PCLSLHGAKD 749 (1112)
Q Consensus 691 --~~~~~~~-------~~k~~~ll~----~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~--------~~~~ihg~~~ 749 (1112)
....... ..+...++. .+......+++||||+++..|+.++..|...+. .+..+||.++
T Consensus 403 ~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~ 482 (590)
T 3h1t_A 403 PDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG 482 (590)
T ss_dssp ------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH
T ss_pred ccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh
Confidence 0000000 011222222 233333457999999999999999999987543 3778999986
Q ss_pred HHHHHHHHHHhhcCCcc---EEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCC
Q 001261 750 QTDRESTISDFKSNVCN---LLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGR 810 (1112)
Q Consensus 750 ~~~R~~~~~~F~~g~~~---VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~ 810 (1112)
. +|..++..|++|... |||||+++++|||+|++++||+|++|+++..|+||+||+||.|.
T Consensus 483 ~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 483 K-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp H-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred H-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 4 799999999998766 89999999999999999999999999999999999999999874
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-33 Score=305.14 Aligned_cols=213 Identities=32% Similarity=0.539 Sum_probs=179.4
Q ss_pred cCCCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCC
Q 001261 459 GKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAG 538 (1112)
Q Consensus 459 ~~~~p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~ 538 (1112)
..+.|.++.+|.+++|++.+++.|..+||..|+|+|.++|+.++.|+++|++++||||||++|++|++..+... .
T Consensus 22 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~-----~ 96 (237)
T 3bor_A 22 ESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE-----F 96 (237)
T ss_dssp -----CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----S
T ss_pred cCCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----C
Confidence 34567889999999999999999999999999999999999999999999999999999999999999886542 2
Q ss_pred CCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcC-CeEEEeCchHHHHHHHhcCCcccccCC
Q 001261 539 DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRG-TEIVVCTPGRMIDILCTSGGKITNLRR 617 (1112)
Q Consensus 539 ~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~-~~IvV~Tp~~L~~~l~~~~~~~~~l~~ 617 (1112)
.++++|||+||++|+.|++..+..++...++.+.+++||.....+...+..+ ++|+|+||++|.+++.... ..+..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~---~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRY---LSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTS---SCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCC---cCccc
Confidence 4678999999999999999999999988899999999999888777777666 8999999999999886532 46788
Q ss_pred ceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEc
Q 001261 618 VTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVG 679 (1112)
Q Consensus 618 i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~ 679 (1112)
+.+|||||||+|++++|...+..++..+++..|+|+||||+|+.+..++..++.+|+.|.++
T Consensus 174 ~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 174 IKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp CCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred CcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999887654
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-33 Score=300.44 Aligned_cols=229 Identities=33% Similarity=0.502 Sum_probs=198.4
Q ss_pred HHHHHHHHhhcCceeccCCCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHH
Q 001261 443 PEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 443 ~~~~~~~r~~~~~~~~~~~~p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~l 522 (1112)
.+++..++..+.. ..+.++.+|.+++|++.+++.|..+||..|+|+|.++|+.++.|+++|++++||||||++|+
T Consensus 6 ~~~~~~~~~~~~~-----~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 6 RESISRLMQNYEK-----INVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp HHHHHHHHHTTTT-----CCGGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred HhHHHHHHhcccc-----CCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHH
Confidence 4556666666542 12567889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHH
Q 001261 523 LPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMI 602 (1112)
Q Consensus 523 lp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~ 602 (1112)
+|++..+..... ....++++|||+||++|+.|++..+..++...++.+.+++||.....+...+ .+++|+|+||++|.
T Consensus 81 ~~~l~~l~~~~~-~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~ 158 (236)
T 2pl3_A 81 VPVLEALYRLQW-TSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLL 158 (236)
T ss_dssp HHHHHHHHHTTC-CGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHH
T ss_pred HHHHHHHHhhcc-cccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHH
Confidence 999998865321 1234788999999999999999999999988889999999999887776655 46999999999999
Q ss_pred HHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcC
Q 001261 603 DILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGG 680 (1112)
Q Consensus 603 ~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~ 680 (1112)
.++.... ...+.++++|||||||+|++++|...+..++..+++.+|+|+||||+++.+..++..++.+|+.+.++.
T Consensus 159 ~~l~~~~--~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 234 (236)
T 2pl3_A 159 QHMDETV--SFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHE 234 (236)
T ss_dssp HHHHHCS--SCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECCC
T ss_pred HHHHhcC--CcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeCC
Confidence 8886542 245788999999999999999999999999999999999999999999999999999999999887653
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-33 Score=299.18 Aligned_cols=211 Identities=30% Similarity=0.471 Sum_probs=184.1
Q ss_pred cCCCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCC
Q 001261 459 GKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAG 538 (1112)
Q Consensus 459 ~~~~p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~ 538 (1112)
+...|.+..+|.+++|++.+++.|..+||..|+|+|.++|+.++.|+++|++++||||||++|++|++..+... .
T Consensus 16 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~-----~ 90 (230)
T 2oxc_A 16 GDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE-----N 90 (230)
T ss_dssp --------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----S
T ss_pred CCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----C
Confidence 45567888999999999999999999999999999999999999999999999999999999999999887542 3
Q ss_pred CCCcEEEEccchhHHHHHHHHHHHHhhhc-CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCC
Q 001261 539 DGPVGLIMAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRR 617 (1112)
Q Consensus 539 ~~~~~LIl~PtreLa~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~ 617 (1112)
.++++|||+||++|+.|++..+..++... ++.+.+++||.....+...+. +++|+|+||++|.+++.... ..+.+
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~~~~~~---~~~~~ 166 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK-KCHIAVGSPGRIKQLIELDY---LNPGS 166 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTT-SCSEEEECHHHHHHHHHTTS---SCGGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhcc-CCCEEEECHHHHHHHHhcCC---ccccc
Confidence 46899999999999999999999998765 889999999998877766554 69999999999999886532 46788
Q ss_pred ceEEEeccchhhhccC-ChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEE
Q 001261 618 VTYLVMDEADRMFDMG-FEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQV 678 (1112)
Q Consensus 618 i~~vViDEah~~~~~g-f~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i 678 (1112)
+.+|||||||+++++| |...+..++..++...|+|+||||+|+.+..++..++.+|+.+.+
T Consensus 167 ~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 167 IRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp CCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred CCEEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 9999999999999998 999999999999989999999999999999999999999987654
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-33 Score=358.55 Aligned_cols=357 Identities=15% Similarity=0.149 Sum_probs=243.0
Q ss_pred CCChHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001261 488 EKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g--~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
..|+|+|.+++..++.. ..+|++++||+|||++++..+...+.. +...++|||||+ .|+.||..++.+.+
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~------g~~~rvLIVvP~-sLl~Qw~~E~~~~f- 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS------GAAERVLIIVPE-TLQHQWLVEMLRRF- 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT------SSCCCEEEECCT-TTHHHHHHHHHHHS-
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh------CCCCeEEEEeCH-HHHHHHHHHHHHHh-
Confidence 47899999999998864 478999999999999998887776554 234479999999 99999999997754
Q ss_pred hcCceEEEEeCCCChHHHHHH---HhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChh-HHHHH
Q 001261 566 VMGVRCVPVYGGSGVAQQISE---LKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEP-QITRI 641 (1112)
Q Consensus 566 ~~~i~~~~~~gg~~~~~~~~~---l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~-~i~~i 641 (1112)
++.+..+.|+. ....... .....+|||+|++.|...... ........+++|||||||++.+.+... ....+
T Consensus 224 --~l~v~v~~~~~-~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~--~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~ 298 (968)
T 3dmq_A 224 --NLRFALFDDER-YAEAQHDAYNPFDTEQLVICSLDFARRSKQR--LEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQA 298 (968)
T ss_dssp --CCCCEECCHHH-HHHHHHTTCSSSTTCSEEEECHHHHHTSTTT--THHHHTSCCCEEEECCSSCCCCBTTBCCHHHHH
T ss_pred --CCCEEEEccch-hhhhhhhcccccccCCEEEEcHHHHhhCHHH--HHHhhhcCCCEEEehhhHhhcCCCCcchHHHHH
Confidence 56655544322 2221111 112468999999987432100 011234578999999999997654321 12223
Q ss_pred HHhc-CCCCcEEEEeccccH----HHHHHHHHhcCC--------------------------------------------
Q 001261 642 VQNI-RPDRQTVLFSATFPR----QVEILARKVLNK-------------------------------------------- 672 (1112)
Q Consensus 642 l~~~-~~~~q~il~SAT~~~----~~~~l~~~~~~~-------------------------------------------- 672 (1112)
+..+ ....+++++|||+.. .+..+...+...
T Consensus 299 l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~ 378 (968)
T 3dmq_A 299 IEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIG 378 (968)
T ss_dssp HHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTC
T ss_pred HHHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhc
Confidence 3333 345679999999742 011111100000
Q ss_pred ------------------------------------CeEEEEcC---cccccCCccEEE---------------------
Q 001261 673 ------------------------------------PVEIQVGG---RSVVNKDITQLV--------------------- 692 (1112)
Q Consensus 673 ------------------------------------p~~i~i~~---~~~~~~~i~q~~--------------------- 692 (1112)
.+.+.... ..++...+....
T Consensus 379 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~ 458 (968)
T 3dmq_A 379 EQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARK 458 (968)
T ss_dssp TTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCS
T ss_pred chhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhh
Confidence 00000000 000000000000
Q ss_pred ------------------------EecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHh-cCCCeeeecCC
Q 001261 693 ------------------------EVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLK-HGYPCLSLHGA 747 (1112)
Q Consensus 693 ------------------------~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~-~g~~~~~ihg~ 747 (1112)
.......|...|..+|.. ...+++||||+++..++.++..|.. .|+.+..+||+
T Consensus 459 ~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~-~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~ 537 (968)
T 3dmq_A 459 SAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS-HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEG 537 (968)
T ss_dssp SGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH-TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTT
T ss_pred hhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh-CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 112334577778888776 4577999999999999999999995 69999999999
Q ss_pred CCHHHHHHHHHHhhcCC--ccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCc
Q 001261 748 KDQTDRESTISDFKSNV--CNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKY 825 (1112)
Q Consensus 748 ~~~~~R~~~~~~F~~g~--~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~ 825 (1112)
|++.+|..++..|++|. ++|||||+++++|||+|++++||+|++|+++..|+|++||+||.|+.|.|++++.......
T Consensus 538 ~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ 617 (968)
T 3dmq_A 538 MSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTA 617 (968)
T ss_dssp SCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSH
T ss_pred CCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChH
Confidence 99999999999999998 9999999999999999999999999999999999999999999999997777665555555
Q ss_pred hHHHHHHHhh----ccCCCChhHHHHHHHHHHHHhhhh
Q 001261 826 SPDLVKALEL----SEQVVPDDLKALADSFMAKVNQGL 859 (1112)
Q Consensus 826 ~~~i~~~l~~----~~~~vp~~l~~~~~~~~~~~~~~~ 859 (1112)
...|.+.+.. ....+|. ...+.+.+...+....
T Consensus 618 ee~i~~~~~~k~~~~~~~~~~-~~~i~~~~~~~l~~~l 654 (968)
T 3dmq_A 618 QSVLVRWYHEGLDAFEHTCPT-GRTIYDSVYNDLINYL 654 (968)
T ss_dssp HHHHHHHHHHTTCCSSSCCSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCceecCCCC-HHHHHHHHHHHHHHHH
Confidence 5566665532 2233443 3455555555554444
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-33 Score=298.05 Aligned_cols=207 Identities=31% Similarity=0.518 Sum_probs=185.7
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEE
Q 001261 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGL 544 (1112)
Q Consensus 465 pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~L 544 (1112)
|+.+|.+++|++.+++.|..+||..|+|+|.++|+.++.|+++|++++||||||++|++|++..+... ..++++|
T Consensus 2 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~-----~~~~~~l 76 (219)
T 1q0u_A 2 AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE-----RAEVQAV 76 (219)
T ss_dssp --CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT-----SCSCCEE
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC-----cCCceEE
Confidence 45789999999999999999999999999999999999999999999999999999999999887542 3467899
Q ss_pred EEccchhHHHHHHHHHHHHhhhc----CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceE
Q 001261 545 IMAPTRELVQQIHSDIRKFAKVM----GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTY 620 (1112)
Q Consensus 545 Il~PtreLa~Q~~~~~~~~~~~~----~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~ 620 (1112)
||+||++|+.|++..+..++... ++.+.+++||.....+...+..+++|+|+||++|.+++.... ..+..+++
T Consensus 77 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~---~~~~~~~~ 153 (219)
T 1q0u_A 77 ITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQA---LDVHTAHI 153 (219)
T ss_dssp EECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTC---CCGGGCCE
T ss_pred EEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCC---CCcCcceE
Confidence 99999999999999999998776 788999999987766655556678999999999999886532 46788999
Q ss_pred EEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEc
Q 001261 621 LVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVG 679 (1112)
Q Consensus 621 vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~ 679 (1112)
|||||||++++++|...+..++..+++..|+|+||||+|..+..++..++.+|..+.+.
T Consensus 154 lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~ 212 (219)
T 1q0u_A 154 LVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVL 212 (219)
T ss_dssp EEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC
T ss_pred EEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEee
Confidence 99999999999999999999999999999999999999999999999999999887654
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=295.77 Aligned_cols=213 Identities=31% Similarity=0.508 Sum_probs=183.1
Q ss_pred CCCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCC
Q 001261 460 KDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGD 539 (1112)
Q Consensus 460 ~~~p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~ 539 (1112)
...|+++.+|.+++|++.+++.|..+||..|+|+|.++|+.++.|+++|++++||||||++|++|++..+... ..
T Consensus 7 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~-----~~ 81 (224)
T 1qde_A 7 TNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----VK 81 (224)
T ss_dssp BSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----CC
T ss_pred cccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc-----CC
Confidence 3467889999999999999999999999999999999999999999999999999999999999999887542 34
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCce
Q 001261 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVT 619 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~ 619 (1112)
++++|||+||++|+.|++..+..++...++.+..++||.....+...+.. ++|+|+||++|..++... ...+.+++
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~---~~~~~~~~ 157 (224)
T 1qde_A 82 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRR---RFRTDKIK 157 (224)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTT---SSCCTTCC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhC---CcchhhCc
Confidence 67999999999999999999999998889999999999887777665554 899999999999888764 24678899
Q ss_pred EEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCc
Q 001261 620 YLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGR 681 (1112)
Q Consensus 620 ~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~ 681 (1112)
+|||||||++++++|...+..++..+++..|+|+||||+|+.+..++..++.+|+.+.+...
T Consensus 158 ~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 158 MFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp EEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC----
T ss_pred EEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999988776543
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-32 Score=288.94 Aligned_cols=202 Identities=31% Similarity=0.593 Sum_probs=185.8
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEE
Q 001261 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (1112)
Q Consensus 467 ~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl 546 (1112)
.+|.+++|++.+++.|..+||..|+|+|.++|+.++.|+++|+++|||||||++|++|++..+... ..++++|||
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-----~~~~~~lil 77 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK-----KDNIQAMVI 77 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT-----SCSCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc-----CCCeeEEEE
Confidence 479999999999999999999999999999999999999999999999999999999999886542 346789999
Q ss_pred ccchhHHHHHHHHHHHHhhhc-CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEecc
Q 001261 547 APTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDE 625 (1112)
Q Consensus 547 ~PtreLa~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDE 625 (1112)
+||++|+.|++..+..++..+ ++.+.+++||.....+...+..+++|+|+||++|..++.... ..+.++.+|||||
T Consensus 78 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~---~~~~~~~~lViDE 154 (206)
T 1vec_A 78 VPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGV---AKVDHVQMIVLDE 154 (206)
T ss_dssp CSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC---SCCTTCCEEEEET
T ss_pred eCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCC---cCcccCCEEEEEC
Confidence 999999999999999998877 789999999999988888888889999999999998886532 4678899999999
Q ss_pred chhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEE
Q 001261 626 ADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEI 676 (1112)
Q Consensus 626 ah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i 676 (1112)
||++++.+|...+..++..+++..|+|+||||+|..+..++..++.+|+.+
T Consensus 155 ah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 155 ADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred hHHhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 999999999999999999999899999999999999999999999999765
|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=318.01 Aligned_cols=321 Identities=21% Similarity=0.220 Sum_probs=238.1
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+|+ .|+++|..+.-++..|+ |....||+|||+++.+|++...+. |..|.||+||..||.|-+.++..++
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~--------G~~vhVvT~ndyLA~rdae~m~~l~ 140 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI--------GKGVHLVTVNDYLARRDALWMGPVY 140 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc--------CCceEEEeccHHHHHhHHHHHHHHH
Confidence 564 68999999999998887 889999999999999999865443 6679999999999999999999999
Q ss_pred hhcCceEEEEeCC--------------------------------------------------CChHHHHHHHhcCCeEE
Q 001261 565 KVMGVRCVPVYGG--------------------------------------------------SGVAQQISELKRGTEIV 594 (1112)
Q Consensus 565 ~~~~i~~~~~~gg--------------------------------------------------~~~~~~~~~l~~~~~Iv 594 (1112)
..+|+.+.+++.. .+..+..... .|+|+
T Consensus 141 ~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY--~~DIt 218 (822)
T 3jux_A 141 LFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAY--LCDVT 218 (822)
T ss_dssp HHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHH--HSSEE
T ss_pred HHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHh--cCCCE
Confidence 9999999999882 1111111222 38999
Q ss_pred EeCchHHH-HHHHhcC---CcccccCCceEEEeccchhhh-cc--------C-------ChhH-----------------
Q 001261 595 VCTPGRMI-DILCTSG---GKITNLRRVTYLVMDEADRMF-DM--------G-------FEPQ----------------- 637 (1112)
Q Consensus 595 V~Tp~~L~-~~l~~~~---~~~~~l~~i~~vViDEah~~~-~~--------g-------f~~~----------------- 637 (1112)
++|..-|. |+|..+- ....-...+.|.||||+|.++ |. | +...
T Consensus 219 YgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vd 298 (822)
T 3jux_A 219 YGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVD 298 (822)
T ss_dssp EEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEEC
T ss_pred EccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEE
Confidence 99998873 4554321 111124678899999999753 10 0 0000
Q ss_pred ---------------HHHH---------------------HHh---cCCC------------------------------
Q 001261 638 ---------------ITRI---------------------VQN---IRPD------------------------------ 648 (1112)
Q Consensus 638 ---------------i~~i---------------------l~~---~~~~------------------------------ 648 (1112)
+..+ +.. +..+
T Consensus 299 ek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GL 378 (822)
T 3jux_A 299 EKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGL 378 (822)
T ss_dssp CSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGH
T ss_pred cccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHH
Confidence 0000 000 0000
Q ss_pred -------------------------------CcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccE-EEEecc
Q 001261 649 -------------------------------RQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQ-LVEVRP 696 (1112)
Q Consensus 649 -------------------------------~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q-~~~~~~ 696 (1112)
..+.+||+|.......|...+ +-.+. .++. ..+...+.+ .+.+..
T Consensus 379 HQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY-~l~vv-~IPt-nkp~~R~d~~d~vy~t 455 (822)
T 3jux_A 379 HQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVY-GMEVV-VIPT-HKPMIRKDHDDLVFRT 455 (822)
T ss_dssp HHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHS-CCCEE-ECCC-SSCCCCEECCCEEESS
T ss_pred HHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHh-CCeEE-EECC-CCCcceeecCcEEEec
Confidence 248999999988777665554 33332 3322 112222222 234566
Q ss_pred cchhHHHHHHHHHhhh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCccc
Q 001261 697 ESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA 775 (1112)
Q Consensus 697 ~~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~ 775 (1112)
...|+..++..|.... .+.++||||+|+..++.|+..|...|+++.++||++.+.++..+...|+.| .|||||++|+
T Consensus 456 ~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAg 533 (822)
T 3jux_A 456 QKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAG 533 (822)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTT
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhh
Confidence 6789999999888754 456999999999999999999999999999999996655555555566555 6999999999
Q ss_pred ccCCCC--------CccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCcc
Q 001261 776 RGLDVK--------ELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823 (1112)
Q Consensus 776 ~GlDi~--------~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~ 823 (1112)
||+||+ +..+||+|++|.+...|+||+|||||.|.+|.+++|++..|.
T Consensus 534 RGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 534 RGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp TTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred CCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 999998 677999999999999999999999999999999999998874
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=284.50 Aligned_cols=204 Identities=41% Similarity=0.694 Sum_probs=185.2
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc
Q 001261 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547 (1112)
Q Consensus 468 ~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~ 547 (1112)
+|.+++|++.+++.|..+||..|+|+|.++|+.++.|+++|++++||||||++|++|++..+.... ..+.++++||++
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~--~~~~~~~~lil~ 79 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ--ERGRKPRALVLT 79 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC--CTTCCCSEEEEC
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc--ccCCCCcEEEEE
Confidence 699999999999999999999999999999999999999999999999999999999999876432 123578999999
Q ss_pred cchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccch
Q 001261 548 PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD 627 (1112)
Q Consensus 548 PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah 627 (1112)
||++|+.|++..+..++.. +.+.+++||.....+...+..+++|+|+||++|..++.... ..+..+++|||||||
T Consensus 80 P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~---~~~~~~~~iViDEah 154 (207)
T 2gxq_A 80 PTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGV---LDLSRVEVAVLDEAD 154 (207)
T ss_dssp SSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTS---SCCTTCSEEEEESHH
T ss_pred CCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCC---cchhhceEEEEEChh
Confidence 9999999999999998764 67888999998888888888889999999999999887632 467889999999999
Q ss_pred hhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEE
Q 001261 628 RMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQV 678 (1112)
Q Consensus 628 ~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i 678 (1112)
++++++|...+..++..++++.|+|+||||+|+.+..++..++.+|+.+.+
T Consensus 155 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 155 EMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp HHHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred HhhccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 999999999999999999999999999999999999999999999987765
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-32 Score=298.02 Aligned_cols=205 Identities=33% Similarity=0.521 Sum_probs=183.0
Q ss_pred cccccCC--CCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEE
Q 001261 467 KTWHQTG--LTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGL 544 (1112)
Q Consensus 467 ~~~~~~~--L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~L 544 (1112)
.+|..++ |++.+++.|..+||..|+|+|.++|+.++.|+++|++++||||||++|++|++..+..... ....++++|
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~-~~~~~~~~l 130 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRF-MPRNGTGVL 130 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTC-CGGGCCCEE
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccc-cccCCceEE
Confidence 4566666 9999999999999999999999999999999999999999999999999999998876432 123478899
Q ss_pred EEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEec
Q 001261 545 IMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (1112)
Q Consensus 545 Il~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViD 624 (1112)
||+||++||.|++..+..++...++.+.+++||.....+...+..+++||||||++|.+++.... ...+.++.+||||
T Consensus 131 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~--~~~~~~l~~lViD 208 (262)
T 3ly5_A 131 ILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTP--GFMYKNLQCLVID 208 (262)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCT--TCCCTTCCEEEEC
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccC--CcccccCCEEEEc
Confidence 99999999999999999999999999999999999998888888889999999999999887643 2457889999999
Q ss_pred cchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCe
Q 001261 625 EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPV 674 (1112)
Q Consensus 625 Eah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~ 674 (1112)
|||+|++++|...+..|+..++..+|+|+||||+|+.+..++..++.++.
T Consensus 209 Eah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 209 EADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp SHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred ChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999987653
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-31 Score=322.22 Aligned_cols=310 Identities=18% Similarity=0.209 Sum_probs=217.3
Q ss_pred CCChHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001261 488 EKPMPIQAQALPVIM----SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il----~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
..|+|+|.++++++. .+.++|++++||+|||++++..+...... +....+|||||+ .|+.||..++.+|
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~------~~~~~~LIv~P~-~l~~qw~~e~~~~ 108 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKE------NELTPSLVICPL-SVLKNWEEELSKF 108 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHT------TCCSSEEEEECS-TTHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhc------CCCCCEEEEccH-HHHHHHHHHHHHH
Confidence 368999999999874 57899999999999999976655544322 234579999995 6889999999998
Q ss_pred hhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHH
Q 001261 564 AKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ 643 (1112)
Q Consensus 564 ~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~ 643 (1112)
+. ++.+..++|+... ......+|+|+||+.|..... .....+++|||||||++.+.+ ..+...+.
T Consensus 109 ~~--~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~------l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~ 173 (500)
T 1z63_A 109 AP--HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR------LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVK 173 (500)
T ss_dssp CT--TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH------HHTCCEEEEEEETGGGGSCTT--SHHHHHHH
T ss_pred CC--CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch------hcCCCcCEEEEeCccccCCHh--HHHHHHHH
Confidence 75 3455555555422 112357999999999865432 233468999999999997654 34555566
Q ss_pred hcCCCCcEEEEeccccHH----HHHHHHHhc--------------------------------CCCeEEEEcCcc-----
Q 001261 644 NIRPDRQTVLFSATFPRQ----VEILARKVL--------------------------------NKPVEIQVGGRS----- 682 (1112)
Q Consensus 644 ~~~~~~q~il~SAT~~~~----~~~l~~~~~--------------------------------~~p~~i~i~~~~----- 682 (1112)
.++ ..+.+++|||+..+ +..++..+. -.|+.+......
T Consensus 174 ~l~-~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~ 252 (500)
T 1z63_A 174 ELK-SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIIN 252 (500)
T ss_dssp TSC-EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHT
T ss_pred hhc-cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhh
Confidence 663 45789999998431 111111110 012211110000
Q ss_pred cccCCccEEEEe--------------------------------------------------------cccchhHHHHHH
Q 001261 683 VVNKDITQLVEV--------------------------------------------------------RPESDRFLRLLE 706 (1112)
Q Consensus 683 ~~~~~i~q~~~~--------------------------------------------------------~~~~~k~~~ll~ 706 (1112)
..+......+.+ .....|+..+..
T Consensus 253 ~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~ 332 (500)
T 1z63_A 253 DLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTME 332 (500)
T ss_dssp TSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHH
T ss_pred cCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHH
Confidence 001111111111 012345556666
Q ss_pred HHHhhh-cCCeEEEEeCCHHHHHHHHHHHHhc-CCCeeeecCCCCHHHHHHHHHHhhcC-Ccc-EEEecCcccccCCCCC
Q 001261 707 LLGEWY-EKGKILIFVHSQEKCDALFRDLLKH-GYPCLSLHGAKDQTDRESTISDFKSN-VCN-LLIATSVAARGLDVKE 782 (1112)
Q Consensus 707 ~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~-g~~~~~ihg~~~~~~R~~~~~~F~~g-~~~-VLVaT~v~~~GlDi~~ 782 (1112)
+|.... .+.++||||++...++.+...|... |+.+..+||++++.+|..+++.|++| ... |||+|+++++|||++.
T Consensus 333 ~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~ 412 (500)
T 1z63_A 333 IIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTS 412 (500)
T ss_dssp HHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTT
T ss_pred HHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhh
Confidence 666654 3569999999999999999999885 99999999999999999999999988 454 8999999999999999
Q ss_pred ccEEEEeCCCCCHhHHHHHhcccCCCCCccEE--EEEecC
Q 001261 783 LELVINFDAPNHYEDYVHRVGRTGRAGRKGCA--ITFISE 820 (1112)
Q Consensus 783 v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~--i~~~~~ 820 (1112)
+++||+|++|+++..|+|++||++|.|+.+.+ |.|++.
T Consensus 413 ~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~ 452 (500)
T 1z63_A 413 ANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISV 452 (500)
T ss_dssp CSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEET
T ss_pred CCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeC
Confidence 99999999999999999999999999987665 445554
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.98 E-value=1.5e-31 Score=287.09 Aligned_cols=207 Identities=28% Similarity=0.509 Sum_probs=182.8
Q ss_pred CCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCc
Q 001261 463 PKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPV 542 (1112)
Q Consensus 463 p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~ 542 (1112)
+....+|.+++|++.+++.|..+||..|+|+|.++|+.++.|+++|++++||+|||++|++|++..+... ..+++
T Consensus 10 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~-----~~~~~ 84 (220)
T 1t6n_A 10 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQVS 84 (220)
T ss_dssp ----CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC-----TTCCC
T ss_pred cccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc-----CCCEE
Confidence 4455679999999999999999999999999999999999999999999999999999999999886542 23568
Q ss_pred EEEEccchhHHHHHHHHHHHHhhhc-CceEEEEeCCCChHHHHHHHhc-CCeEEEeCchHHHHHHHhcCCcccccCCceE
Q 001261 543 GLIMAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTY 620 (1112)
Q Consensus 543 ~LIl~PtreLa~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~ 620 (1112)
+|||+||++|+.|++..+..++..+ ++.+.+++||.....+...+.. .++|+|+||++|..++.... ..+..+++
T Consensus 85 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~---~~~~~~~~ 161 (220)
T 1t6n_A 85 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS---LNLKHIKH 161 (220)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTS---SCCTTCCE
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCC---CCcccCCE
Confidence 9999999999999999999998776 7899999999988887777665 46999999999999886532 46788999
Q ss_pred EEeccchhhhc-cCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEE
Q 001261 621 LVMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQ 677 (1112)
Q Consensus 621 vViDEah~~~~-~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~ 677 (1112)
|||||||++++ .+|...+..++..+++..|+|+||||+|+.+..++..++.+|+.+.
T Consensus 162 lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 162 FILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp EEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred EEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 99999999987 5788899999999988999999999999999999999999998765
|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-30 Score=326.21 Aligned_cols=336 Identities=15% Similarity=0.161 Sum_probs=228.5
Q ss_pred HHHHHHHHHCC-------CCCChHHHHHHHHHHHc--------------CCCEEEEcCCCChHHHHHHHHHHHHHhcCCC
Q 001261 476 SKIMETIRKLN-------YEKPMPIQAQALPVIMS--------------GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPP 534 (1112)
Q Consensus 476 ~~l~~~l~~~~-------~~~pt~iQ~~ai~~il~--------------g~dvii~a~TGsGKT~~~llp~l~~l~~~~~ 534 (1112)
..++..|..+- ...|+|+|..|++.++. ++++|++++||||||+++ ++++..+...
T Consensus 251 ~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~-- 327 (1038)
T 2w00_A 251 HTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL-- 327 (1038)
T ss_dssp HHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC--
T ss_pred HHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc--
Confidence 44555555432 23599999999999875 378999999999999997 5666554431
Q ss_pred CCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHh-cCCeEEEeCchHHHHHHHhcCCccc
Q 001261 535 VAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELK-RGTEIVVCTPGRMIDILCTSGGKIT 613 (1112)
Q Consensus 535 ~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~-~~~~IvV~Tp~~L~~~l~~~~~~~~ 613 (1112)
+..+++|||||+++|+.||...+..|+.. .+.++.+.......+. .+.+|+|+||++|..++.... ...
T Consensus 328 ---~~~~rvLvlvpr~eL~~Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~-~~~ 397 (1038)
T 2w00_A 328 ---DFIDKVFFVVDRKDLDYQTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAES-DLP 397 (1038)
T ss_dssp ---TTCCEEEEEECGGGCCHHHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCC-CCG
T ss_pred ---CCCceEEEEeCcHHHHHHHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhccc-chh
Confidence 23468999999999999999999887642 2456666666666664 468999999999998876532 122
Q ss_pred ccCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHH----HHHHHhcCC-----------------
Q 001261 614 NLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVE----ILARKVLNK----------------- 672 (1112)
Q Consensus 614 ~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~----~l~~~~~~~----------------- 672 (1112)
.+..+.+|||||||++... ..+..|+..++ ..++|+|||||..... .....+++.
T Consensus 398 ~~~~~~lvIiDEAHrs~~~---~~~~~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~ 473 (1038)
T 2w00_A 398 VYNQQVVFIFDECHRSQFG---EAQKNLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVL 473 (1038)
T ss_dssp GGGSCEEEEEESCCTTHHH---HHHHHHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSC
T ss_pred ccccccEEEEEccchhcch---HHHHHHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcC
Confidence 4567899999999997642 33555666664 5799999999874321 111222233
Q ss_pred CeEEEEcCcc-cc---c-C-C------ccEEEEecccchhHHHHHHHHHhhh-----------cCCeEEEEeCCHHHHHH
Q 001261 673 PVEIQVGGRS-VV---N-K-D------ITQLVEVRPESDRFLRLLELLGEWY-----------EKGKILIFVHSQEKCDA 729 (1112)
Q Consensus 673 p~~i~i~~~~-~~---~-~-~------i~q~~~~~~~~~k~~~ll~~l~~~~-----------~~~~vLIF~~s~~~~~~ 729 (1112)
|+.+...... .. . . . +.+. .......++..++..|...+ ...++||||+++..|..
T Consensus 474 p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~-~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~ 552 (1038)
T 2w00_A 474 KFKVDYNDVRPQFKSLETETDEKKLSAAENQ-QAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKA 552 (1038)
T ss_dssp CEEEEECCCCGGGHHHHTCCCHHHHHHTCST-TTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHH
T ss_pred CeEEEEEeccchhhhccccccHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHH
Confidence 3222111100 00 0 0 0 0000 00012223334444332211 23589999999999999
Q ss_pred HHHHHHhcC------------CCe-eeecCC----------C----------CH--------------------------
Q 001261 730 LFRDLLKHG------------YPC-LSLHGA----------K----------DQ-------------------------- 750 (1112)
Q Consensus 730 l~~~L~~~g------------~~~-~~ihg~----------~----------~~-------------------------- 750 (1112)
++..|...+ +.+ +++||+ + ++
T Consensus 553 ~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~ 632 (1038)
T 2w00_A 553 YYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSN 632 (1038)
T ss_dssp HHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHH
T ss_pred HHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccch
Confidence 999998754 555 455542 2 22
Q ss_pred ---HHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCc----cEEEEEecCCcc
Q 001261 751 ---TDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRK----GCAITFISEEDA 823 (1112)
Q Consensus 751 ---~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~----g~~i~~~~~~d~ 823 (1112)
..|..++..|++|.++|||+|+++.+|+|+|.+ .|+++|.|.+...|+|++||++|.+.. |.++.|+.
T Consensus 633 ~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~---- 707 (1038)
T 2w00_A 633 GFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD---- 707 (1038)
T ss_dssp HHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC----
T ss_pred hhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc----
Confidence 147889999999999999999999999999999 678899999999999999999998754 77777775
Q ss_pred CchHHHHHHHhh
Q 001261 824 KYSPDLVKALEL 835 (1112)
Q Consensus 824 ~~~~~i~~~l~~ 835 (1112)
....+..++..
T Consensus 708 -~~~~l~~Al~~ 718 (1038)
T 2w00_A 708 -LERSTIDAITL 718 (1038)
T ss_dssp -CHHHHHHHHHH
T ss_pred -cHHHHHHHHHH
Confidence 34445555543
|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=320.01 Aligned_cols=318 Identities=18% Similarity=0.241 Sum_probs=226.7
Q ss_pred CCChHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001261 488 EKPMPIQAQALPVIM----SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il----~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
..|+|+|.+++.+++ .+.++|++.+||+|||++++..+...+... .....+||||| ..|+.||..+|.++
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~-----~~~~~~LIV~P-~sll~qW~~E~~~~ 308 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFAR-----RQNGPHIIVVP-LSTMPAWLDTFEKW 308 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH-----SCCSCEEEECC-TTTHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc-----CCCCCEEEEEC-chHHHHHHHHHHHH
Confidence 478999999999877 789999999999999998777665554332 12345799999 67889999999998
Q ss_pred hhhcCceEEEEeCCCChHHHHHHH------------hcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhc
Q 001261 564 AKVMGVRCVPVYGGSGVAQQISEL------------KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD 631 (1112)
Q Consensus 564 ~~~~~i~~~~~~gg~~~~~~~~~l------------~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~ 631 (1112)
+. ++.+++.+|+......+... ...++|+|+||+.|...... +....+.+|||||||++.+
T Consensus 309 ~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~-----l~~~~w~~vIvDEaH~lkn 381 (800)
T 3mwy_W 309 AP--DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE-----LGSIKWQFMAVDEAHRLKN 381 (800)
T ss_dssp ST--TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH-----HHTSEEEEEEETTGGGGCC
T ss_pred CC--CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH-----HhcCCcceeehhhhhhhcC
Confidence 75 45666666665444443322 12468999999998664422 1223578999999999865
Q ss_pred cCChhHHHHHHHhcCCCCcEEEEecccc----HHHHHHHHHhcCCC-----------------------------eEEEE
Q 001261 632 MGFEPQITRIVQNIRPDRQTVLFSATFP----RQVEILARKVLNKP-----------------------------VEIQV 678 (1112)
Q Consensus 632 ~gf~~~i~~il~~~~~~~q~il~SAT~~----~~~~~l~~~~~~~p-----------------------------~~i~i 678 (1112)
. ...+...+..++ ....+++|||+- ..+..++..+.... +.+..
T Consensus 382 ~--~s~~~~~l~~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR 458 (800)
T 3mwy_W 382 A--ESSLYESLNSFK-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRR 458 (800)
T ss_dssp S--SSHHHHHHTTSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEEC
T ss_pred c--hhHHHHHHHHhh-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhh
Confidence 3 345566666663 345788999972 22333333222211 11100
Q ss_pred cCccc---ccCCccEEEEe-------------------------------------------------------------
Q 001261 679 GGRSV---VNKDITQLVEV------------------------------------------------------------- 694 (1112)
Q Consensus 679 ~~~~~---~~~~i~q~~~~------------------------------------------------------------- 694 (1112)
....+ .+......+.+
T Consensus 459 ~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~ 538 (800)
T 3mwy_W 459 LKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFG 538 (800)
T ss_dssp CGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC-
T ss_pred hHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcc
Confidence 00000 00000000000
Q ss_pred -------------cccchhHHHHHHHHHhhhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHh
Q 001261 695 -------------RPESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDF 760 (1112)
Q Consensus 695 -------------~~~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F 760 (1112)
.....|+..|..+|..+.. +.++||||.....++.|..+|...|+.+..|||+++..+|..++..|
T Consensus 539 ~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F 618 (800)
T 3mwy_W 539 DGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHF 618 (800)
T ss_dssp ---CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTT
T ss_pred cccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHh
Confidence 0123456666677766544 45999999999999999999999999999999999999999999999
Q ss_pred hcCCc---cEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEE--EEEecCC
Q 001261 761 KSNVC---NLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCA--ITFISEE 821 (1112)
Q Consensus 761 ~~g~~---~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~--i~~~~~~ 821 (1112)
+++.. .+||+|.+++.|||++.+++||+||+|||+..++|++||++|.|+...+ |.|++..
T Consensus 619 ~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 619 NSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKD 684 (800)
T ss_dssp SSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETT
T ss_pred hCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCC
Confidence 98654 5999999999999999999999999999999999999999999987554 4456543
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-28 Score=304.24 Aligned_cols=322 Identities=17% Similarity=0.215 Sum_probs=222.2
Q ss_pred CChHHHHHHHHHHH---------cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHH
Q 001261 489 KPMPIQAQALPVIM---------SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSD 559 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il---------~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~ 559 (1112)
.|+|+|.+++.++. .+..+|+..+||+|||++++..+...+...+. .......+|||||+ .|+.||..+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~-~~p~~~~~LiV~P~-sll~qW~~E 132 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPD-CKPEIDKVIVVSPS-SLVRNWYNE 132 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTT-SSCSCSCEEEEECH-HHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCcc-ccCCCCcEEEEecH-HHHHHHHHH
Confidence 68899999999985 34678999999999999988777766554322 11223468999997 788999999
Q ss_pred HHHHhhhcCceEEEEeCCCChHH--HHHHHhc------CCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhc
Q 001261 560 IRKFAKVMGVRCVPVYGGSGVAQ--QISELKR------GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD 631 (1112)
Q Consensus 560 ~~~~~~~~~i~~~~~~gg~~~~~--~~~~l~~------~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~ 631 (1112)
+.+|+.. .+.++.++||..... .+..+.. .++|+|+||+.|..... ......+++|||||||++.+
T Consensus 133 ~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~-----~l~~~~~~~vI~DEaH~ikn 206 (644)
T 1z3i_X 133 VGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE-----VLHKGKVGLVICDEGHRLKN 206 (644)
T ss_dssp HHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT-----TTTTSCCCEEEETTGGGCCT
T ss_pred HHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH-----HhhcCCccEEEEECceecCC
Confidence 9999865 566777777764321 2222221 36899999998865432 12335688999999999875
Q ss_pred cCChhHHHHHHHhcCCCCcEEEEeccccHH----HH---------------HHHHHhc----------------------
Q 001261 632 MGFEPQITRIVQNIRPDRQTVLFSATFPRQ----VE---------------ILARKVL---------------------- 670 (1112)
Q Consensus 632 ~gf~~~i~~il~~~~~~~q~il~SAT~~~~----~~---------------~l~~~~~---------------------- 670 (1112)
.. ......+..++ ....|++|||+-.+ +. .|...|.
T Consensus 207 ~~--~~~~~al~~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~ 283 (644)
T 1z3i_X 207 SD--NQTYLALNSMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQK 283 (644)
T ss_dssp TC--HHHHHHHHHHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHH
T ss_pred hh--hHHHHHHHhcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHH
Confidence 43 34445555554 45689999996321 00 0100000
Q ss_pred -------CCCeEEEEcCcc---cccCCccEEEEe----------------------------------------------
Q 001261 671 -------NKPVEIQVGGRS---VVNKDITQLVEV---------------------------------------------- 694 (1112)
Q Consensus 671 -------~~p~~i~i~~~~---~~~~~i~q~~~~---------------------------------------------- 694 (1112)
-.|+.+.-.... ..+..+.+.+.+
T Consensus 284 ~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp 363 (644)
T 1z3i_X 284 LQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHP 363 (644)
T ss_dssp HHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCH
Confidence 000000000000 000000000000
Q ss_pred -------------------------------cccchhHHHHHHHHHhhh--cCCeEEEEeCCHHHHHHHHHHHHhcCCCe
Q 001261 695 -------------------------------RPESDRFLRLLELLGEWY--EKGKILIFVHSQEKCDALFRDLLKHGYPC 741 (1112)
Q Consensus 695 -------------------------------~~~~~k~~~ll~~l~~~~--~~~~vLIF~~s~~~~~~l~~~L~~~g~~~ 741 (1112)
.....|+..|..++.... ...++||||++...++.|...|...|+.+
T Consensus 364 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~ 443 (644)
T 1z3i_X 364 ALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLY 443 (644)
T ss_dssp HHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCE
Confidence 011234444444444332 35799999999999999999999999999
Q ss_pred eeecCCCCHHHHHHHHHHhhcCCc---cEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccE--EEE
Q 001261 742 LSLHGAKDQTDRESTISDFKSNVC---NLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGC--AIT 816 (1112)
Q Consensus 742 ~~ihg~~~~~~R~~~~~~F~~g~~---~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~--~i~ 816 (1112)
..+||+++..+|..++..|++|.. .+||+|.++++|||++++++||+||+||++..|.|++||++|.|+... +|.
T Consensus 444 ~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~ 523 (644)
T 1z3i_X 444 VRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYR 523 (644)
T ss_dssp EEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEE
T ss_pred EEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEE
Confidence 999999999999999999999865 489999999999999999999999999999999999999999998764 444
Q ss_pred EecCC
Q 001261 817 FISEE 821 (1112)
Q Consensus 817 ~~~~~ 821 (1112)
|++..
T Consensus 524 lv~~~ 528 (644)
T 1z3i_X 524 LLSTG 528 (644)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 56543
|
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.4e-27 Score=282.38 Aligned_cols=321 Identities=22% Similarity=0.273 Sum_probs=233.9
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+|+ .||++|..++|.++.|+ |+.+.||+|||++|++|++.+... |..|+||+||++||.|++.++..++
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~--------G~qv~VvTPTreLA~Qdae~m~~l~ 144 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT--------GKGVHVVTVNDYLARRDAEWMGPVY 144 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT--------CSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh--------CCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 898 99999999999999998 999999999999999999755442 5579999999999999999999999
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHH-HHHHHhcC---CcccccC---CceEEEeccchhhh-ccCCh-
Q 001261 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM-IDILCTSG---GKITNLR---RVTYLVMDEADRMF-DMGFE- 635 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L-~~~l~~~~---~~~~~l~---~i~~vViDEah~~~-~~gf~- 635 (1112)
..+|+++.+++||.+... ..+..+++|+|+||++| .++|..+- .....++ .+.++||||||.|+ +.+..
T Consensus 145 ~~lGLsv~~i~Gg~~~~~--r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDeartP 222 (997)
T 2ipc_A 145 RGLGLSVGVIQHASTPAE--RRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEARTP 222 (997)
T ss_dssp HTTTCCEEECCTTCCHHH--HHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSSTTSC
T ss_pred HhcCCeEEEEeCCCCHHH--HHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhCCCCC
Confidence 999999999999988543 33445699999999999 88887652 1123567 89999999999886 32211
Q ss_pred --------------hHHHHHHHhcCCC-----------------------------------------------------
Q 001261 636 --------------PQITRIVQNIRPD----------------------------------------------------- 648 (1112)
Q Consensus 636 --------------~~i~~il~~~~~~----------------------------------------------------- 648 (1112)
..+..++..++.+
T Consensus 223 LIISgp~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly~~~n~~l~~ 302 (997)
T 2ipc_A 223 LIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENMELAH 302 (997)
T ss_dssp EEEEESCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHHTTTCHHHHH
T ss_pred eeeeCCCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCccccCchhHHHHH
Confidence 1112222221110
Q ss_pred ----------------------------------------------------------------------------CcEE
Q 001261 649 ----------------------------------------------------------------------------RQTV 652 (1112)
Q Consensus 649 ----------------------------------------------------------------------------~q~i 652 (1112)
..+.
T Consensus 303 ~i~~ALrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~QnyFr~Y~kLs 382 (997)
T 2ipc_A 303 MLIQAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLYEKRA 382 (997)
T ss_dssp HHHHHHHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHHHHTTSSEEE
T ss_pred HHHHHHHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHHHHHhChHhe
Confidence 1266
Q ss_pred EEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhc-CCeEEEEeCCHHHHHHHH
Q 001261 653 LFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALF 731 (1112)
Q Consensus 653 l~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~ 731 (1112)
+||+|.......|... ++-.+.+.....+...... ...++.....|+..++..+...+. +.+|||+|.|++..+.|+
T Consensus 383 GMTGTA~tE~~Ef~~i-Y~l~Vv~IPTn~p~~R~D~-~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~LS 460 (997)
T 2ipc_A 383 GMTGTAKTEEKEFQEI-YGMDVVVVPTNRPVIRKDF-PDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLS 460 (997)
T ss_dssp EEESSCGGGHHHHHHH-HCCCEEECCCSSCCCCEEE-EEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHHH
T ss_pred ecCCCchHHHHHHHHH-hCCCEEEcCCCCCcccccC-CCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHH
Confidence 7777776655555443 3333333222222222211 223345667889888888776654 559999999999999999
Q ss_pred HHHH----------------------------------------------------------------------------
Q 001261 732 RDLL---------------------------------------------------------------------------- 735 (1112)
Q Consensus 732 ~~L~---------------------------------------------------------------------------- 735 (1112)
..|.
T Consensus 461 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (997)
T 2ipc_A 461 QMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVL 540 (997)
T ss_dssp HHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhhhhhHHH
Confidence 9998
Q ss_pred hcCCCeeeecCCCCHHHHHHHHHHhhcCC-ccEEEecCcccccCCCCCc-------------------c-----------
Q 001261 736 KHGYPCLSLHGAKDQTDRESTISDFKSNV-CNLLIATSVAARGLDVKEL-------------------E----------- 784 (1112)
Q Consensus 736 ~~g~~~~~ihg~~~~~~R~~~~~~F~~g~-~~VLVaT~v~~~GlDi~~v-------------------~----------- 784 (1112)
+.|++.-+++......+ ..|+. ..|. -.|-|||++|+||.||.=- .
T Consensus 541 ~~gI~H~VLNAK~he~E-AeIIA--qAG~~GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (997)
T 2ipc_A 541 RQGIPHQVLNAKHHARE-AEIVA--QAGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKMV 617 (997)
T ss_dssp HHCCCCCEECSSSHHHH-HHHHH--TTTSTTCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHHHHHH
T ss_pred HcCCCeeeccccchHHH-HHHHH--hcCCCCeEEEEecccCCCcCeecCCCHHHHHHHHHHhhccccccccccccccccc
Confidence 55777777776543222 23332 2343 4699999999999998532 1
Q ss_pred --------------------------------------------EEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecC
Q 001261 785 --------------------------------------------LVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISE 820 (1112)
Q Consensus 785 --------------------------------------------~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~ 820 (1112)
+||--..+.|--.-.|-.||+||-|.+|.+..|++-
T Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~LSL 697 (997)
T 2ipc_A 618 AGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSF 697 (997)
T ss_dssp HTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEEES
T ss_pred ccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCeEEEEEC
Confidence 677777788888888999999999999999988886
Q ss_pred Ccc
Q 001261 821 EDA 823 (1112)
Q Consensus 821 ~d~ 823 (1112)
+|.
T Consensus 698 eDd 700 (997)
T 2ipc_A 698 DDD 700 (997)
T ss_dssp SSH
T ss_pred ChH
Confidence 653
|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-27 Score=291.07 Aligned_cols=175 Identities=23% Similarity=0.300 Sum_probs=137.3
Q ss_pred CCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhh-cCCeEEEEeCCHH
Q 001261 647 PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWY-EKGKILIFVHSQE 725 (1112)
Q Consensus 647 ~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~-~~~~vLIF~~s~~ 725 (1112)
...|+|+||||++...... ....+...+...... ...+.+.+...++..|+..|..+. .+.++||||+++.
T Consensus 379 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~----~p~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~ 450 (664)
T 1c4o_A 379 RVSQVVFVSATPGPFELAH----SGRVVEQIIRPTGLL----DPLVRVKPTENQILDLMEGIRERAARGERTLVTVLTVR 450 (664)
T ss_dssp TCSEEEEEESSCCHHHHHH----CSEEEEECSCTTCCC----CCEEEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred hcCCEEEEecCCCHHHHHh----hhCeeeeeeccCCCC----CCeEEEecccchHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 4678999999998653211 111111111111111 112333444566677777776654 4569999999999
Q ss_pred HHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCC-----CCCHhHHHH
Q 001261 726 KCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDA-----PNHYEDYVH 800 (1112)
Q Consensus 726 ~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~-----p~s~~~y~Q 800 (1112)
.++.|+..|...|+.+..+||+|++.+|..++..|+.|.++|||||+++++|||+|++++||+++. |.+...|+|
T Consensus 451 ~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQ 530 (664)
T 1c4o_A 451 MAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQ 530 (664)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHH
T ss_pred HHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999997 899999999
Q ss_pred HhcccCCCCCccEEEEEecCCccCchHHHH
Q 001261 801 RVGRTGRAGRKGCAITFISEEDAKYSPDLV 830 (1112)
Q Consensus 801 riGR~gR~G~~g~~i~~~~~~d~~~~~~i~ 830 (1112)
|+||+||.| .|.|++|+++.+..+...|.
T Consensus 531 r~GRagR~~-~G~~i~~~~~~~~~~~~~i~ 559 (664)
T 1c4o_A 531 TIGRAARNA-RGEVWLYADRVSEAMQRAIE 559 (664)
T ss_dssp HHGGGTTST-TCEEEEECSSCCHHHHHHHH
T ss_pred HHCccCcCC-CCEEEEEEcCCCHHHHHHHH
Confidence 999999996 89999999887665544443
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-27 Score=248.35 Aligned_cols=181 Identities=35% Similarity=0.517 Sum_probs=148.5
Q ss_pred HHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeec
Q 001261 666 ARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLH 745 (1112)
Q Consensus 666 ~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ih 745 (1112)
...++.+|+.|.++.......+|.|.+.......|+..|+.+|... .+++||||+++..++.++..|...|+.+..+|
T Consensus 8 ~~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lh 85 (191)
T 2p6n_A 8 SSGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKT--PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIH 85 (191)
T ss_dssp --------------------CCSEEEEEECCGGGHHHHHHHHHTTS--CSCEEEECSCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred cccccCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEe
Confidence 3467888998988887788889999999999899999999988763 56899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCC-ccC
Q 001261 746 GAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEE-DAK 824 (1112)
Q Consensus 746 g~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~-d~~ 824 (1112)
|+|++.+|..++..|++|.+.|||||+++++|||+|++++||+|++|+++..|+||+||+||.|+.|.|++|+++. +..
T Consensus 86 g~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~ 165 (191)
T 2p6n_A 86 GGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDES 165 (191)
T ss_dssp TTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHH
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999976 777
Q ss_pred chHHHHHHHhhccCCCChhHHHHH
Q 001261 825 YSPDLVKALELSEQVVPDDLKALA 848 (1112)
Q Consensus 825 ~~~~i~~~l~~~~~~vp~~l~~~~ 848 (1112)
++..|.+.|....+.+|+.|..+.
T Consensus 166 ~~~~l~~~l~~~~~~~p~~l~~~~ 189 (191)
T 2p6n_A 166 VLMDLKALLLEAKQKVPPVLQVLH 189 (191)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHSTT
T ss_pred HHHHHHHHHHHccCcCCHHHHhhc
Confidence 888999999999999999876543
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-26 Score=287.50 Aligned_cols=175 Identities=19% Similarity=0.262 Sum_probs=138.2
Q ss_pred CCCcEEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhh-cCCeEEEEeCCHH
Q 001261 647 PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWY-EKGKILIFVHSQE 725 (1112)
Q Consensus 647 ~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~-~~~~vLIF~~s~~ 725 (1112)
...|+++||||+++..... ....+...+....... ..+.+.+...++..|+..|..+. .+.++||||+++.
T Consensus 385 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~~----p~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~ 456 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEH----TDEMVEQIIRPTGLLD----PLIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKK 456 (661)
T ss_dssp TCSEEEEECSSCCHHHHHH----CSSCEEECCCTTCCCC----CEEEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred cCCCEEEEecCCChhHHHh----hhCeeeeeecccCCCC----CeEEEecccchHHHHHHHHHHHHhcCCeEEEEECCHH
Confidence 4689999999998654222 1222222111111111 11333444566677777776655 4569999999999
Q ss_pred HHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCC-----CCCHhHHHH
Q 001261 726 KCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDA-----PNHYEDYVH 800 (1112)
Q Consensus 726 ~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~-----p~s~~~y~Q 800 (1112)
.++.|+..|...|+.+..+||++++.+|..++..|++|.+.|||||+++++|||+|++++||+++. |.+...|+|
T Consensus 457 ~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQ 536 (661)
T 2d7d_A 457 MSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQ 536 (661)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHH
T ss_pred HHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999997 999999999
Q ss_pred HhcccCCCCCccEEEEEecCCccCchHHHH
Q 001261 801 RVGRTGRAGRKGCAITFISEEDAKYSPDLV 830 (1112)
Q Consensus 801 riGR~gR~G~~g~~i~~~~~~d~~~~~~i~ 830 (1112)
|+||+||. ..|.|++|+++.+..+...|.
T Consensus 537 r~GRagR~-~~G~~i~~~~~~~~~~~~~i~ 565 (661)
T 2d7d_A 537 TIGRAARN-AEGRVIMYADKITKSMEIAIN 565 (661)
T ss_dssp HHHTTTTS-TTCEEEEECSSCCHHHHHHHH
T ss_pred HhCcccCC-CCCEEEEEEeCCCHHHHHHHH
Confidence 99999998 689999999987665544433
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-26 Score=238.97 Aligned_cols=168 Identities=40% Similarity=0.626 Sum_probs=143.3
Q ss_pred ccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhh
Q 001261 682 SVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFK 761 (1112)
Q Consensus 682 ~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~ 761 (1112)
...+.+|.|.+..+....|+..|+.+|......+++||||++...++.++..|...|+.+..+||+|++.+|..++..|+
T Consensus 14 ~~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~ 93 (185)
T 2jgn_A 14 GSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 93 (185)
T ss_dssp --CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHH
T ss_pred CCCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHH
Confidence 34567899999999889999999999987656789999999999999999999999999999999999999999999999
Q ss_pred cCCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhccCCCC
Q 001261 762 SNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVP 841 (1112)
Q Consensus 762 ~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp 841 (1112)
+|.+.|||||+++++|||+|++++||+|++|+++..|+||+||+||.|+.|.|++|+++.+...+..+.+.+....+.+|
T Consensus 94 ~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 173 (185)
T 2jgn_A 94 SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVP 173 (185)
T ss_dssp HTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCCCC
T ss_pred cCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHH
Q 001261 842 DDLKALAD 849 (1112)
Q Consensus 842 ~~l~~~~~ 849 (1112)
.+|..++.
T Consensus 174 ~~l~~~a~ 181 (185)
T 2jgn_A 174 SWLENMAY 181 (185)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99888764
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.92 E-value=9.8e-25 Score=222.35 Aligned_cols=152 Identities=36% Similarity=0.621 Sum_probs=141.6
Q ss_pred ccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcC
Q 001261 684 VNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN 763 (1112)
Q Consensus 684 ~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g 763 (1112)
...++.|.+.......|+..|..+|... ..+++||||++...++.++..|...|+.+..+||+|++.+|..++..|++|
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g 84 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLLKDVLMTE-NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRG 84 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CcccceEEEEECChHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 4456888998888899999999988764 567999999999999999999999999999999999999999999999999
Q ss_pred CccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhc
Q 001261 764 VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELS 836 (1112)
Q Consensus 764 ~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~ 836 (1112)
.+.|||||+++++|||+|++++||+|++|+++..|+||+||+||.|+.|.|++|+++.+..++..|.+.+...
T Consensus 85 ~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 157 (163)
T 2hjv_A 85 EYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFE 157 (163)
T ss_dssp SCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSC
T ss_pred CCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999999999999999999999999999999999999988888888877553
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.92 E-value=9.7e-25 Score=224.32 Aligned_cols=158 Identities=33% Similarity=0.603 Sum_probs=142.6
Q ss_pred CCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCc
Q 001261 686 KDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVC 765 (1112)
Q Consensus 686 ~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~ 765 (1112)
..+.|.+...+...|+..|+.+|... ..+++||||++...++.++..|...|+.+..+||+|++.+|..++..|++|..
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 82 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 82 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CCeEEEEEECChHHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCC
Confidence 46788888888899999999988764 56799999999999999999999999999999999999999999999999999
Q ss_pred cEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCC-ccCchHHHHHHHhhccCCCChhH
Q 001261 766 NLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEE-DAKYSPDLVKALELSEQVVPDDL 844 (1112)
Q Consensus 766 ~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~-d~~~~~~i~~~l~~~~~~vp~~l 844 (1112)
.|||||+++++|||+|++++||+|++|+++..|+||+||+||.|+.|.|++|+++. +...+..|.+.+......+|..+
T Consensus 83 ~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (172)
T 1t5i_A 83 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 162 (172)
T ss_dssp SEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC---
T ss_pred cEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCChhh
Confidence 99999999999999999999999999999999999999999999999999999875 55677788888877766777653
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.91 E-value=8.1e-25 Score=223.45 Aligned_cols=157 Identities=31% Similarity=0.562 Sum_probs=138.2
Q ss_pred CccEEEEecccch-hHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCc
Q 001261 687 DITQLVEVRPESD-RFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVC 765 (1112)
Q Consensus 687 ~i~q~~~~~~~~~-k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~ 765 (1112)
++.|.+...+... |...|..++... ..+++||||++...++.++..|...++.+..+||+|++.+|..++..|++|..
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 81 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSS 81 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 5677777777666 888888888764 56899999999999999999999999999999999999999999999999999
Q ss_pred cEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhH
Q 001261 766 NLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDL 844 (1112)
Q Consensus 766 ~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp~~l 844 (1112)
.|||||+++++|||+|++++||+|++|+++..|+||+||+||.|+.|.|++|+++.+...+..+.+.+....+.+|..+
T Consensus 82 ~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (165)
T 1fuk_A 82 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDI 160 (165)
T ss_dssp SEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSCC
T ss_pred EEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCccH
Confidence 9999999999999999999999999999999999999999999999999999999998888888888877766666543
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-24 Score=221.51 Aligned_cols=156 Identities=29% Similarity=0.513 Sum_probs=136.2
Q ss_pred ccCCccEEEEecccch-hHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhc
Q 001261 684 VNKDITQLVEVRPESD-RFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKS 762 (1112)
Q Consensus 684 ~~~~i~q~~~~~~~~~-k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~ 762 (1112)
...++.|.+..++... |+..|..++... ..+++||||+++..++.++..|...|+.+..+||+|++.+|..++..|++
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~ 82 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSI-TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRD 82 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTS-CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 3457888888777655 888888888764 56799999999999999999999999999999999999999999999999
Q ss_pred CCccEEEecCcccccCCCCCccEEEEeCCC------CCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhc
Q 001261 763 NVCNLLIATSVAARGLDVKELELVINFDAP------NHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELS 836 (1112)
Q Consensus 763 g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p------~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~ 836 (1112)
|.++|||||+++++|||+|++++||+|++| .+...|+||+||+||.|+.|.|++|+++.+...+..|.+.+...
T Consensus 83 g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 162 (175)
T 2rb4_A 83 GKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSS 162 (175)
T ss_dssp TSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCC
T ss_pred CCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999 89999999999999999999999999998877777877777654
Q ss_pred cCCC
Q 001261 837 EQVV 840 (1112)
Q Consensus 837 ~~~v 840 (1112)
...+
T Consensus 163 ~~~~ 166 (175)
T 2rb4_A 163 IKQL 166 (175)
T ss_dssp CEEE
T ss_pred cccc
Confidence 4333
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-23 Score=221.76 Aligned_cols=149 Identities=30% Similarity=0.517 Sum_probs=134.6
Q ss_pred ccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccE
Q 001261 688 ITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNL 767 (1112)
Q Consensus 688 i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~V 767 (1112)
+.+.....+...|+..|..++.. ...+++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|.++|
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~-~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~v 84 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYV-ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRV 84 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHH-HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCE
T ss_pred eeeeEEeCCHHHHHHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeE
Confidence 34455566778899999888875 45789999999999999999999999999999999999999999999999999999
Q ss_pred EEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhcc
Q 001261 768 LIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSE 837 (1112)
Q Consensus 768 LVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~ 837 (1112)
||||+++++|||||++++||+|++|+++..|+||+||+||.|+.|.|++|+++.+...+..+.+.+....
T Consensus 85 lvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~ 154 (212)
T 3eaq_A 85 LVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRF 154 (212)
T ss_dssp EEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCC
T ss_pred EEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcC
Confidence 9999999999999999999999999999999999999999999999999999999888888888876543
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.1e-23 Score=230.09 Aligned_cols=149 Identities=30% Similarity=0.516 Sum_probs=133.8
Q ss_pred ccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccE
Q 001261 688 ITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNL 767 (1112)
Q Consensus 688 i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~V 767 (1112)
+.+.+..+....|+..|..++... ..+++||||+++..++.|+..|...|+.+..+||+|++.+|..++..|++|.++|
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~-~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~v 81 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRV 81 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCE
T ss_pred eEEEEEECCHHHHHHHHHHHHHhc-CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceE
Confidence 566777788889999999888764 4789999999999999999999999999999999999999999999999999999
Q ss_pred EEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhcc
Q 001261 768 LIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSE 837 (1112)
Q Consensus 768 LVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~ 837 (1112)
||||+++++|||||++++||+|++|++...|+||+||+||.|+.|.||+|+++.+...+..|.+.+....
T Consensus 82 LVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~ 151 (300)
T 3i32_A 82 LVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRF 151 (300)
T ss_dssp EEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCC
T ss_pred EEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcc
Confidence 9999999999999999999999999999999999999999999999999999999888888888876543
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.79 E-value=7e-24 Score=217.57 Aligned_cols=148 Identities=32% Similarity=0.483 Sum_probs=134.1
Q ss_pred CccEEEEeccc-chhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCc
Q 001261 687 DITQLVEVRPE-SDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVC 765 (1112)
Q Consensus 687 ~i~q~~~~~~~-~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~ 765 (1112)
++.|.+...+. ..|+..|..++.. ...+++||||++...++.++..|...|+.+..+||+|++.+|..++..|++|..
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~-~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~ 81 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQ-PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 81 (170)
Confidence 45666666666 7788888887765 345799999999999999999999999999999999999999999999999999
Q ss_pred cEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhh
Q 001261 766 NLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALEL 835 (1112)
Q Consensus 766 ~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~ 835 (1112)
+|||||+++++|||+|++++||+|++|+++..|+||+||+||.|+.|.|++|+++.+...+..+.+.+..
T Consensus 82 ~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 151 (170)
T 2yjt_D 82 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEE 151 (170)
Confidence 9999999999999999999999999999999999999999999999999999999888888777776644
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.2e-22 Score=213.18 Aligned_cols=170 Identities=19% Similarity=0.219 Sum_probs=123.6
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHH-HHHHHHHH
Q 001261 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQ-IHSDIRKF 563 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q-~~~~~~~~ 563 (1112)
.....|+|+|.++++.++.++++|++++||+|||++|+++++..+..... ...++++||||||++|+.| +...+..+
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH--TTCCCCEEEEESSHHHHHHHHHHTHHHH
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc--ccCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 44568999999999999999999999999999999999999987654211 1236789999999999999 77888887
Q ss_pred hhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCC---cccccCCceEEEeccchhhhccCChhHHHH
Q 001261 564 AKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGG---KITNLRRVTYLVMDEADRMFDMGFEPQITR 640 (1112)
Q Consensus 564 ~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~---~~~~l~~i~~vViDEah~~~~~gf~~~i~~ 640 (1112)
+.. ++.+..++|+.........+..+++|+|+||+.|..++..... ....+..+.+|||||||++.+.++...+..
T Consensus 107 ~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~ 185 (216)
T 3b6e_A 107 LKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMR 185 (216)
T ss_dssp HTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHH
T ss_pred hcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHH
Confidence 664 7888888888765544444445689999999999988865321 113567899999999999987777666543
Q ss_pred HHHhcC--------------CCCcEEEEecc
Q 001261 641 IVQNIR--------------PDRQTVLFSAT 657 (1112)
Q Consensus 641 il~~~~--------------~~~q~il~SAT 657 (1112)
.+.... +..++|+||||
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 186 HYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHhcccccccccccCCCCcceEEEeecC
Confidence 332221 67899999998
|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.2e-21 Score=232.80 Aligned_cols=304 Identities=19% Similarity=0.214 Sum_probs=170.0
Q ss_pred CCCCCChHHHHHHHHH----HHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHH
Q 001261 485 LNYEKPMPIQAQALPV----IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDI 560 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~----il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~ 560 (1112)
.|| .|+|+|.+++.. +..|+++|+.+|||+|||++|++|++.. ++++||++||++|+.|+...+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~-----------~~~~~~~~~t~~l~~q~~~~~ 71 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL-----------KKKVLIFTRTHSQLDSIYKNA 71 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH-----------TCEEEEEESCHHHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC-----------CCcEEEEcCCHHHHHHHHHHH
Confidence 466 799999998654 4588999999999999999999999864 568999999999999999877
Q ss_pred HHHhhhcCceEEEEeCCCCh--------H-H-----------------------H---------------HHHHhcCCeE
Q 001261 561 RKFAKVMGVRCVPVYGGSGV--------A-Q-----------------------Q---------------ISELKRGTEI 593 (1112)
Q Consensus 561 ~~~~~~~~i~~~~~~gg~~~--------~-~-----------------------~---------------~~~l~~~~~I 593 (1112)
..+ +++++.+.|.... . . . ...+..+++|
T Consensus 72 ~~l----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adi 147 (540)
T 2vl7_A 72 KLL----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDV 147 (540)
T ss_dssp GGG----TCCEEEC---------------------------------------------------------CTTGGGCSE
T ss_pred Hhc----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCE
Confidence 663 4555544432210 0 0 0 0111235799
Q ss_pred EEeCchHHHHHHHhcCCc----ccccCCceEEEeccchhhhccC--Ch-----h--------------------------
Q 001261 594 VVCTPGRMIDILCTSGGK----ITNLRRVTYLVMDEADRMFDMG--FE-----P-------------------------- 636 (1112)
Q Consensus 594 vV~Tp~~L~~~l~~~~~~----~~~l~~i~~vViDEah~~~~~g--f~-----~-------------------------- 636 (1112)
|||||..|++.+...... ...+....+|||||||+|.+.. |. .
T Consensus 148 VV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~~l~~~ 227 (540)
T 2vl7_A 148 IAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNRIDAKKVKDY 227 (540)
T ss_dssp EEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGGGGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred EEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHHHHHHhccccCHHHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 999999998755432100 0124567899999999984310 00 0
Q ss_pred --------------------------------HHHHHHH--------------------h---------------cCCC-
Q 001261 637 --------------------------------QITRIVQ--------------------N---------------IRPD- 648 (1112)
Q Consensus 637 --------------------------------~i~~il~--------------------~---------------~~~~- 648 (1112)
.+..++. . +.|.
T Consensus 228 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~P~~ 307 (540)
T 2vl7_A 228 INLLIDYMSKLIKDGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGSLVKVPSD 307 (540)
T ss_dssp HHHHHHHHHTSCCSSSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEETTEEEEECSC
T ss_pred HHHHHHHHHHhhccccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEECCeEEEehHH
Confidence 0000000 0 0000
Q ss_pred --------Cc----EEEEeccccHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEE---eccc-ch---hHHHHHHHHH
Q 001261 649 --------RQ----TVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVE---VRPE-SD---RFLRLLELLG 709 (1112)
Q Consensus 649 --------~q----~il~SAT~~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~---~~~~-~~---k~~~ll~~l~ 709 (1112)
.. +|++|||+++.+. +...| ...+.. .+ ...+.+. +... .. .+..+...|.
T Consensus 308 ~~~~l~~~~~~~~~~IltSATL~p~~~-~~~~f-----~~~~~~-~~---g~~~~~~~~~l~s~f~~r~~~~~~~~~~l~ 377 (540)
T 2vl7_A 308 VNQLIEDALNVKTFKVLMSGTLPESLT-LTNSY-----KIVVNE-SY---GRGEYYYCPNVTSELRKRNSNIPIYSILLK 377 (540)
T ss_dssp HHHHHHHHTCCSSCEEEEESSCCTTCC-CTTEE-----EEECCC-C----CCCEEEECTTCCCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCccCCeEEEcccCCCCcc-cchhc-----CCchhh-ee---cCCcceeccccCCCcccccCHHHHHHHHHH
Confidence 11 3777777765100 00000 000000 00 0011111 0001 11 1133444444
Q ss_pred hhh--cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEE--ecCcccccCCCCC---
Q 001261 710 EWY--EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLI--ATSVAARGLDVKE--- 782 (1112)
Q Consensus 710 ~~~--~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLV--aT~v~~~GlDi~~--- 782 (1112)
... ..+.+||||+|...++.++..|.. +. +.++|.. ..+..+++.|+.+. .||+ ||..+++|||+|+
T Consensus 378 ~~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~ 451 (540)
T 2vl7_A 378 RIYENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKEN 451 (540)
T ss_dssp HHHHTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------
T ss_pred HHHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcc
Confidence 332 357999999999999999988854 33 4556654 46788999999864 5776 8899999999998
Q ss_pred -ccEEEEeCCCCC-H-----------------------------hHHHHHhcccCCCCCccEEEEEecC
Q 001261 783 -LELVINFDAPNH-Y-----------------------------EDYVHRVGRTGRAGRKGCAITFISE 820 (1112)
Q Consensus 783 -v~~VI~~d~p~s-~-----------------------------~~y~QriGR~gR~G~~g~~i~~~~~ 820 (1112)
+.+||++++|.. + ..+.|.+||+-|....--++++++.
T Consensus 452 ~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~ 520 (540)
T 2vl7_A 452 LFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDS 520 (540)
T ss_dssp CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESG
T ss_pred cccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEcc
Confidence 899999999852 1 1235899999997544334555543
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-21 Score=210.40 Aligned_cols=181 Identities=18% Similarity=0.209 Sum_probs=133.2
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHH
Q 001261 478 IMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIH 557 (1112)
Q Consensus 478 l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~ 557 (1112)
+...+.......++++|.++++.+..|++++++|+||||||++|.++++..+..... +.+..+||++||++|+.|++
T Consensus 50 ~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~---~~~~~~l~~~p~~~la~q~~ 126 (235)
T 3llm_A 50 LQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR---AAECNIVVTQPRRISAVSVA 126 (235)
T ss_dssp HHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC---GGGCEEEEEESSHHHHHHHH
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC---CCceEEEEeccchHHHHHHH
Confidence 333344444456789999999999999999999999999999999999887765321 23568999999999999998
Q ss_pred HHHHHHhh-hcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhh-hccCCh
Q 001261 558 SDIRKFAK-VMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRM-FDMGFE 635 (1112)
Q Consensus 558 ~~~~~~~~-~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~-~~~gf~ 635 (1112)
..+..... ..+..+......... ....+++|+|||||+|++++.. .+.++++|||||||++ ++++|.
T Consensus 127 ~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~Ivv~Tpg~l~~~l~~------~l~~~~~lVlDEah~~~~~~~~~ 195 (235)
T 3llm_A 127 ERVAFERGEEPGKSCGYSVRFESI-----LPRPHASIMFCTVGVLLRKLEA------GIRGISHVIVDEIHERDINTDFL 195 (235)
T ss_dssp HHHHHTTTCCTTSSEEEEETTEEE-----CCCSSSEEEEEEHHHHHHHHHH------CCTTCCEEEECCTTSCCHHHHHH
T ss_pred HHHHHHhccccCceEEEeechhhc-----cCCCCCeEEEECHHHHHHHHHh------hhcCCcEEEEECCccCCcchHHH
Confidence 88776543 223333322211100 0013578999999999999864 4788999999999986 888887
Q ss_pred hHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCe
Q 001261 636 PQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPV 674 (1112)
Q Consensus 636 ~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~ 674 (1112)
..+...+....++.|+|+||||++... ++..+.+.|+
T Consensus 196 ~~~l~~i~~~~~~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 196 LVVLRDVVQAYPEVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp HHHHHHHHHHCTTSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred HHHHHHHHhhCCCCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 544444444457899999999999876 6666666665
|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-19 Score=219.52 Aligned_cols=309 Identities=17% Similarity=0.142 Sum_probs=200.9
Q ss_pred CChHHHHHHHHH----HHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 489 KPMPIQAQALPV----IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 489 ~pt~iQ~~ai~~----il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
.|+|+|.+++.. +..|+++|+.+|||+|||++|++|++.. ++++||++||++|+.|+.+++..+.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~-----------~~~v~i~~pt~~l~~q~~~~~~~l~ 71 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV-----------KPKVLFVVRTHNEFYPIYRDLTKIR 71 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH-----------CSEEEEEESSGGGHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC-----------CCeEEEEcCCHHHHHHHHHHHHHHh
Confidence 689999998775 4579999999999999999999999972 6789999999999999999999987
Q ss_pred hhcCceEEEEeCCCC---------------------------------hHHHH------------------HHHhcCCeE
Q 001261 565 KVMGVRCVPVYGGSG---------------------------------VAQQI------------------SELKRGTEI 593 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~---------------------------------~~~~~------------------~~l~~~~~I 593 (1112)
..++++++++.|+.. ....+ ..+..+++|
T Consensus 72 ~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adI 151 (551)
T 3crv_A 72 EKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADV 151 (551)
T ss_dssp CSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSE
T ss_pred hhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCE
Confidence 777888888777432 11222 223346899
Q ss_pred EEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccC----------------------------------------
Q 001261 594 VVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG---------------------------------------- 633 (1112)
Q Consensus 594 vV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~g---------------------------------------- 633 (1112)
||+||+.|++.+.... +..+....+|||||||+|.+ .
T Consensus 152 VV~~~~~l~~~~~~~~--~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~ 228 (551)
T 3crv_A 152 IALTYPYFFIDRYREF--IDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVV 228 (551)
T ss_dssp EEEETHHHHCHHHHTT--SCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSC
T ss_pred EEeCchHhcCHHHHHh--cCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999988765432 11224678999999998865 1
Q ss_pred ---------------ChhHHHHH----------------------------H----------------------------
Q 001261 634 ---------------FEPQITRI----------------------------V---------------------------- 642 (1112)
Q Consensus 634 ---------------f~~~i~~i----------------------------l---------------------------- 642 (1112)
+...+..+ +
T Consensus 229 ~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l 308 (551)
T 3crv_A 229 LPDEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYL 308 (551)
T ss_dssp CSCSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHH
T ss_pred hccccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHH
Confidence 00000000 0
Q ss_pred HhcCCC-CcEEEEeccccHHHHHHHHHhcCC-CeEEEE---c-CcccccCCccEEEEec--cc------chhHHHHHHHH
Q 001261 643 QNIRPD-RQTVLFSATFPRQVEILARKVLNK-PVEIQV---G-GRSVVNKDITQLVEVR--PE------SDRFLRLLELL 708 (1112)
Q Consensus 643 ~~~~~~-~q~il~SAT~~~~~~~l~~~~~~~-p~~i~i---~-~~~~~~~~i~q~~~~~--~~------~~k~~~ll~~l 708 (1112)
..+... +.+|++|||+.+ ...+...+.-. +....+ . ..++ ..+. ..+... +. ......+...|
T Consensus 309 ~~~~~~~~svIltSaTL~~-~~~~~~~lGl~~~~~~~~~~~~~~spf-~~~~-~l~v~~~~~~~~~~r~~~~~~~l~~~i 385 (551)
T 3crv_A 309 NLLNDNELSIILMSGTLPP-REYMEKVWGIKRNMLYLDVEREIQKRV-SGSY-ECYIGVDVTSKYDMRSDNMWKRYADYL 385 (551)
T ss_dssp GGGGCTTCEEEEEESSCCC-HHHHHHTSCCCSCEEEEEHHHHTTSCC-SCEE-EEEEECSCCCCTTTCCHHHHHHHHHHH
T ss_pred HHHhccCceEEEEeeCCCc-HHHHHHHhCCCCccccccceeecCCcC-CCce-EEEEeCCCCCccccCCHHHHHHHHHHH
Confidence 001122 678999999987 44444443333 232101 0 1111 1111 111111 10 11234455555
Q ss_pred Hhhh--cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEec--CcccccCCCC---
Q 001261 709 GEWY--EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT--SVAARGLDVK--- 781 (1112)
Q Consensus 709 ~~~~--~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT--~v~~~GlDi~--- 781 (1112)
.... .+|.+|||++|...++.++.. .++.++.=..+++ +..+++.|+.....||+|| ..++.|||++
T Consensus 386 ~~l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~ 459 (551)
T 3crv_A 386 LKIYFQAKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNND 459 (551)
T ss_dssp HHHHHHCSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETT
T ss_pred HHHHHhCCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccccC
Confidence 4433 367999999999999999873 3444443333455 3557778854445899998 7999999999
Q ss_pred C--ccEEEEeCCCCC---H----------------hH-----------HHHHhcccCCCCCccEEEEEecC
Q 001261 782 E--LELVINFDAPNH---Y----------------ED-----------YVHRVGRTGRAGRKGCAITFISE 820 (1112)
Q Consensus 782 ~--v~~VI~~d~p~s---~----------------~~-----------y~QriGR~gR~G~~g~~i~~~~~ 820 (1112)
+ +.+||+..+|.. + .. ..|.+||+-|....--++++++.
T Consensus 460 g~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 530 (551)
T 3crv_A 460 RSLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDK 530 (551)
T ss_dssp EESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESG
T ss_pred CcceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeeh
Confidence 4 889999877641 0 11 24889999997655445555554
|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 | Back alignment and structure |
|---|
Probab=99.82 E-value=8.5e-21 Score=211.36 Aligned_cols=155 Identities=17% Similarity=0.139 Sum_probs=127.7
Q ss_pred CCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhc
Q 001261 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM 567 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~ 567 (1112)
..|+|+|.++++.++.+.+.|++++||+|||+++++++...+... +.++||||||++|+.||++.+.+++...
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~-------~~~~lil~Pt~~L~~q~~~~l~~~~~~~ 184 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY-------EGKILIIVPTTALTTQMADDFVDYRLFS 184 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC-------SSEEEEECSSHHHHHHHHHHHHHHTSCC
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC-------CCeEEEEECCHHHHHHHHHHHHHhcccc
Confidence 379999999999999988999999999999999999888776531 2379999999999999999999987766
Q ss_pred CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCC
Q 001261 568 GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 647 (1112)
Q Consensus 568 ~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~ 647 (1112)
++.+..+++|..... ....+++|+|+||+.|.... ...+.++++|||||||++.+ ..+..++..+..
T Consensus 185 ~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~------~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~ 251 (282)
T 1rif_A 185 HAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQP------KEWFSQFGMMMNDECHLATG----KSISSIISGLNN 251 (282)
T ss_dssp GGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTSC------GGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTT
T ss_pred cceEEEEeCCCcchh---hhccCCcEEEEchHHHHhhH------HHHHhhCCEEEEECCccCCc----ccHHHHHHHhhc
Confidence 778888888875432 22246899999999774321 13567899999999999874 478888888888
Q ss_pred CCcEEEEeccccHHH
Q 001261 648 DRQTVLFSATFPRQV 662 (1112)
Q Consensus 648 ~~q~il~SAT~~~~~ 662 (1112)
..++|+||||+++..
T Consensus 252 ~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 252 CMFKFGLSGSLRDGK 266 (282)
T ss_dssp CCEEEEECSSCCTTS
T ss_pred CCeEEEEeCCCCCcc
Confidence 999999999998654
|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.8e-17 Score=200.36 Aligned_cols=318 Identities=14% Similarity=0.151 Sum_probs=194.2
Q ss_pred CChHHHHHHHH----HHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 489 KPMPIQAQALP----VIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 489 ~pt~iQ~~ai~----~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
.|+|.|.+.+. .+..|+++|+.||||+|||++|++|++.++.. .++++||++||++|+.|+.+++..+.
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~-------~~~kvli~t~T~~l~~Qi~~el~~l~ 75 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE-------RKLKVLYLVRTNSQEEQVIKELRSLS 75 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH-------HTCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh-------cCCeEEEECCCHHHHHHHHHHHHHHh
Confidence 58899998875 45689999999999999999999999998764 25789999999999999999999998
Q ss_pred hhcCceEEEEeCCCC----hH-----------H---HHHH----------------------------------------
Q 001261 565 KVMGVRCVPVYGGSG----VA-----------Q---QISE---------------------------------------- 586 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~----~~-----------~---~~~~---------------------------------------- 586 (1112)
...+++++.++|+.+ .. . .+..
T Consensus 76 ~~~~~~~~~l~gr~~lC~~~~~~~~~~~~~~~~~~~~C~~l~~~~~~~~~~~C~~~~~~~~~gd~~~~l~~~~~die~l~ 155 (620)
T 4a15_A 76 STMKIRAIPMQGRVNMCILYRMVDDLHEINAESLAKFCNMKKREVMAGNEAACPYFNFKIRSDETKRFLFDELPTAEEFY 155 (620)
T ss_dssp HHSCCCEEECCCHHHHCSSHHHHCCCSSCCHHHHHHHHHHHHHHHHTTCTTSSTTCSGGGGCHHHHHHHHHHCCCHHHHH
T ss_pred hccCeEEEEEECCCcccccChhhhhcccchhhhHHHHHHHHHhccccCCCCCCCcccccCcccchhHHhccCCCCHHHHH
Confidence 777777777666431 00 0 1110
Q ss_pred ----------------HhcCCeEEEeCchHHHHHHHhcCC--cccccCCceEEEeccchhhhcc----------------
Q 001261 587 ----------------LKRGTEIVVCTPGRMIDILCTSGG--KITNLRRVTYLVMDEADRMFDM---------------- 632 (1112)
Q Consensus 587 ----------------l~~~~~IvV~Tp~~L~~~l~~~~~--~~~~l~~i~~vViDEah~~~~~---------------- 632 (1112)
....++|||+++..|++....... .......-.+|||||||.|.+.
T Consensus 156 ~~~~~~~~CPy~~aR~~~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d~a~~~~S~~ls~~~l~~ 235 (620)
T 4a15_A 156 DYGERNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPDIGRSIGSFRISVESLNR 235 (620)
T ss_dssp HHHHHTTCCHHHHHHHHGGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHHHHHHHHCEEEEHHHHHH
T ss_pred HHhhhcCCCccHHHHHHhhcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHHHHHHhhcceeCHHHHHH
Confidence 011368999999887665432210 0001234579999999987320
Q ss_pred ----------CC------hhH--------HH-----------------------------------HH-------HH---
Q 001261 633 ----------GF------EPQ--------IT-----------------------------------RI-------VQ--- 643 (1112)
Q Consensus 633 ----------gf------~~~--------i~-----------------------------------~i-------l~--- 643 (1112)
.+ ... +. .+ ..
T Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 315 (620)
T 4a15_A 236 ADREAQAYGDPELSQKIHVSDLIEMIRSALQSMVSERCGKGDVRIRFQEFMEYMRIMNKRSEREIRSLLNYLYLFGEYVE 315 (620)
T ss_dssp HHHHHHHTTCCEEETTEEHHHHHHHHHHHHHHHHHHHCSSSCEEECTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHH
Confidence 00 000 00 00 00
Q ss_pred ----------------------h---cC------------------------------CCCcEEEEeccccHHHHHHHHH
Q 001261 644 ----------------------N---IR------------------------------PDRQTVLFSATFPRQVEILARK 668 (1112)
Q Consensus 644 ----------------------~---~~------------------------------~~~q~il~SAT~~~~~~~l~~~ 668 (1112)
. .. ....+|++|||+.+ ...+...
T Consensus 316 ~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~l~~~~~~~~il~SaTL~p-~~~~~~~ 394 (620)
T 4a15_A 316 NEKEKVGKVPFSYCSSVASRIIAFSDQDEEKYAAILSPEDGGYMQAACLDPSGILEVLKESKTIHMSGTLDP-FDFYSDI 394 (620)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHHHTSCTTTEEEEEECGGGCEEEEEECCTHHHHGGGGGSEEEEEESSCCS-HHHHHHH
T ss_pred hhccccccccccHHHHHHHHHHHHhhcCCCCEEEEEEeCCCcEEEEEECCHHHHHHHHhCCeEEEEccCCCc-HHHHHHH
Confidence 0 00 01235899999986 4445444
Q ss_pred hcCCCeEEEEcCcccccCCccEEEEecc--------cchhHHHHHHHHHhhh--cCCeEEEEeCCHHHHHHHHHHHHhcC
Q 001261 669 VLNKPVEIQVGGRSVVNKDITQLVEVRP--------ESDRFLRLLELLGEWY--EKGKILIFVHSQEKCDALFRDLLKHG 738 (1112)
Q Consensus 669 ~~~~p~~i~i~~~~~~~~~i~q~~~~~~--------~~~k~~~ll~~l~~~~--~~~~vLIF~~s~~~~~~l~~~L~~~g 738 (1112)
+.-.+..+.++. ++...+.. .+.... ...-...+...|.... .+|.+|||++|...++.++..|. .
T Consensus 395 lGl~~~~~~~~s-pf~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~--~ 470 (620)
T 4a15_A 395 TGFEIPFKKIGE-IFPPENRY-IAYYDGVSSKYDTLDEKELDRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVS--F 470 (620)
T ss_dssp HCCCCCEEECCC-CSCGGGEE-EEEECCC-------CHHHHHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHTSSCC--S
T ss_pred hCCCceeeecCC-CCCHHHeE-EEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHH--h
Confidence 433233333321 22222221 111111 1111233444443332 36889999999999999998876 2
Q ss_pred CCeeeecCCCCHHHHHHHHHHhhcCCccEEEec--CcccccCCCCC--ccEEEEeCCCCC-------------------H
Q 001261 739 YPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT--SVAARGLDVKE--LELVINFDAPNH-------------------Y 795 (1112)
Q Consensus 739 ~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT--~v~~~GlDi~~--v~~VI~~d~p~s-------------------~ 795 (1112)
+..- ...+++...+..+++.|+ +...||+|| ..++.|||+++ +.+||+..+|.. .
T Consensus 471 ~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~ 548 (620)
T 4a15_A 471 EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGKG 548 (620)
T ss_dssp CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCH
T ss_pred cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCC
Confidence 2222 455566678999999999 888999997 49999999998 889999888752 1
Q ss_pred h----------HHHHHhcccCCCCCccEEEEEecC
Q 001261 796 E----------DYVHRVGRTGRAGRKGCAITFISE 820 (1112)
Q Consensus 796 ~----------~y~QriGR~gR~G~~g~~i~~~~~ 820 (1112)
- ...|.+||+-|.-..--+++|++.
T Consensus 549 ~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 583 (620)
T 4a15_A 549 WEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDK 583 (620)
T ss_dssp HHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECG
T ss_pred chHHhHHHHHHHHHHHhCccccCCCceEEEEEEcc
Confidence 1 125999999997655445555543
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.5e-17 Score=178.01 Aligned_cols=139 Identities=22% Similarity=0.156 Sum_probs=110.4
Q ss_pred CCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhc
Q 001261 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM 567 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~ 567 (1112)
..|+++|.++++.++.+.++|++++||+|||++++.++... +..+||++||++|+.||+..+..|
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----------~~~~liv~P~~~L~~q~~~~~~~~---- 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF---- 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS-----------CSCEEEEESSHHHHHHHHHHHGGG----
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHHHHHHHHhC----
Confidence 47999999999999999999999999999999998887642 457899999999999999988773
Q ss_pred Cce-EEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcC
Q 001261 568 GVR-CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646 (1112)
Q Consensus 568 ~i~-~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~ 646 (1112)
++. +..+.|+.. ...+|+|+||+.+...+.. ....+.+|||||||++.+.. +..++..++
T Consensus 157 ~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~------~~~~~~llIiDEaH~l~~~~----~~~i~~~~~ 217 (237)
T 2fz4_A 157 GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK------LGNRFMLLIFDEVHHLPAES----YVQIAQMSI 217 (237)
T ss_dssp CGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHH------HTTTCSEEEEECSSCCCTTT----HHHHHHTCC
T ss_pred CCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHH------hcccCCEEEEECCccCCChH----HHHHHHhcc
Confidence 677 676766653 2579999999998765532 12458999999999987654 344555554
Q ss_pred CCCcEEEEeccccHH
Q 001261 647 PDRQTVLFSATFPRQ 661 (1112)
Q Consensus 647 ~~~q~il~SAT~~~~ 661 (1112)
..++|+||||+++.
T Consensus 218 -~~~~l~LSATp~r~ 231 (237)
T 2fz4_A 218 -APFRLGLTATFERE 231 (237)
T ss_dssp -CSEEEEEEESCC--
T ss_pred -CCEEEEEecCCCCC
Confidence 67899999998754
|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.70 E-value=3.7e-17 Score=179.84 Aligned_cols=127 Identities=21% Similarity=0.265 Sum_probs=100.5
Q ss_pred cccchhHHHHHHHHHhhh-cCCeEEEEeCCHHHHHHHHHHHHhc-CCCeeeecCCCCHHHHHHHHHHhhcC-Ccc-EEEe
Q 001261 695 RPESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKH-GYPCLSLHGAKDQTDRESTISDFKSN-VCN-LLIA 770 (1112)
Q Consensus 695 ~~~~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~-g~~~~~ihg~~~~~~R~~~~~~F~~g-~~~-VLVa 770 (1112)
.....|+..|..+|.... .+.++||||++...++.|...|... |+.+..+||++++.+|..++..|++| .+. +||+
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~s 171 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLS 171 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEe
Confidence 345789999999888764 4569999999999999999999885 99999999999999999999999998 666 7899
Q ss_pred cCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEE--EEEecCC
Q 001261 771 TSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCA--ITFISEE 821 (1112)
Q Consensus 771 T~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~--i~~~~~~ 821 (1112)
|+++++|||++++++||+||+||++..|+|++||++|.|+.+.+ |.|++..
T Consensus 172 t~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 172 VKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp CCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 99999999999999999999999999999999999999987765 5566643
|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.4e-08 Score=124.46 Aligned_cols=146 Identities=22% Similarity=0.294 Sum_probs=95.4
Q ss_pred hHHHHHHHHHHHcCCCEEEEcCCCChHH--HHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcC
Q 001261 491 MPIQAQALPVIMSGRDCIGVAKTGSGKT--LAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMG 568 (1112)
Q Consensus 491 t~iQ~~ai~~il~g~dvii~a~TGsGKT--~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~ 568 (1112)
++.|..+++.++.++.+|+.|++||||| ++++++++..+.. ..+..+++++||..+|.++.+.+..++..++
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~------~~~~~vll~APTg~AA~~L~e~~~~~~~~l~ 224 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD------GERCRIRLAAPTGKAAARLTESLGKALRQLP 224 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS------SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh------cCCCeEEEEeCChhHHHHHHHHHHHHHhcCC
Confidence 7899999999999999999999999999 5677777765421 2367899999999999999998888776665
Q ss_pred ceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCCC
Q 001261 569 VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD 648 (1112)
Q Consensus 569 i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~ 648 (1112)
+...... +... ....+ ..++-.+|+.. . +.... .....+++||||||+ |++ ...+..++..++..
T Consensus 225 l~~~~~~-~~~~--~~~Ti---h~ll~~~~~~~-~-~~~~~---~~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l~~~ 289 (608)
T 1w36_D 225 LTDEQKK-RIPE--DASTL---HRLLGAQPGSQ-R-LRHHA---GNPLHLDVLVVDEAS-MID---LPMMSRLIDALPDH 289 (608)
T ss_dssp CCSCCCC-SCSC--CCBTT---TSCC-------------CT---TSCCSCSEEEECSGG-GCB---HHHHHHHHHTCCTT
T ss_pred CCHHHHh-ccch--hhhhh---HhhhccCCCch-H-HHhcc---CCCCCCCEEEEechh-hCC---HHHHHHHHHhCCCC
Confidence 4321110 0000 00000 01122223221 0 11111 122368899999999 554 56778889999989
Q ss_pred CcEEEEecc
Q 001261 649 RQTVLFSAT 657 (1112)
Q Consensus 649 ~q~il~SAT 657 (1112)
.|+|++.-.
T Consensus 290 ~~liLvGD~ 298 (608)
T 1w36_D 290 ARVIFLGDR 298 (608)
T ss_dssp CEEEEEECT
T ss_pred CEEEEEcch
Confidence 999998766
|
| >4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A | Back alignment and structure |
|---|
Probab=98.09 E-value=0.0001 Score=91.09 Aligned_cols=66 Identities=23% Similarity=0.215 Sum_probs=51.4
Q ss_pred CChHHHHHHHHHHHcCCC-EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH
Q 001261 489 KPMPIQAQALPVIMSGRD-CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~d-vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~ 562 (1112)
.+.+-|.+|+..++..++ .||.||.|||||.+.+-.+. ++.. .+.++||++||...+.++...+..
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~-~l~~-------~~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIIL-QAVK-------QGLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHH-HHHH-------TTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHH-HHHh-------CCCeEEEEcCchHHHHHHHHHHHh
Confidence 567999999999998765 57789999999987554444 4433 256899999999999888776654
|
| >2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00019 Score=90.11 Aligned_cols=70 Identities=17% Similarity=0.286 Sum_probs=54.5
Q ss_pred CCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001261 487 YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 487 ~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
+..+++.|..|+..++.+.-+||.|+.|||||.+... ++.++... .+.++||++||...+.++...+...
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~-~i~~l~~~------~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSAT-IVYHLSKI------HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHH-HHHHHHHH------HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHH-HHHHHHhC------CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 4568899999999999877789999999999976443 33333321 2567999999999999888877664
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00014 Score=85.90 Aligned_cols=137 Identities=12% Similarity=0.167 Sum_probs=79.7
Q ss_pred HHCCCCCChHHHHHHHHHHHcC----C-CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHH
Q 001261 483 RKLNYEKPMPIQAQALPVIMSG----R-DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIH 557 (1112)
Q Consensus 483 ~~~~~~~pt~iQ~~ai~~il~g----~-dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~ 557 (1112)
.-+.|..|++-|.+++..++.. . .++|.|+.|||||.+ +..++.++.... ...+++++||...|..+.
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~l-l~~~~~~l~~~~------~~~il~~a~T~~Aa~~l~ 91 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTL-TKFIIEALISTG------ETGIILAAPTHAAKKILS 91 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHH-HHHHHHHHHHTT------CCCEEEEESSHHHHHHHH
T ss_pred CCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHH-HHHHHHHHHhcC------CceEEEecCcHHHHHHHH
Confidence 3466788999999999977532 3 789999999999965 345555555421 136899999988876554
Q ss_pred HHHHHHhhhcCceEEEEeCCCChHHHHHHHh----cCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccC
Q 001261 558 SDIRKFAKVMGVRCVPVYGGSGVAQQISELK----RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG 633 (1112)
Q Consensus 558 ~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~----~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~g 633 (1112)
..+ ++.+..++ ..+ .+. .....+... ....+..+.+|||||++.+.
T Consensus 92 ~~~-------~~~~~T~h------~~~-~~~~~~~~~~~~~~~~-------------~~~~~~~~~~iiiDE~~~~~--- 141 (459)
T 3upu_A 92 KLS-------GKEASTIH------SIL-KINPVTYEENVLFEQK-------------EVPDLAKCRVLICDEVSMYD--- 141 (459)
T ss_dssp HHH-------SSCEEEHH------HHH-TEEEEECSSCEEEEEC-------------SCCCCSSCSEEEESCGGGCC---
T ss_pred hhh-------ccchhhHH------HHh-ccCcccccccchhccc-------------ccccccCCCEEEEECchhCC---
Confidence 433 22222111 000 000 000001000 11345678999999999643
Q ss_pred ChhHHHHHHHhcCCCCcEEEEecc
Q 001261 634 FEPQITRIVQNIRPDRQTVLFSAT 657 (1112)
Q Consensus 634 f~~~i~~il~~~~~~~q~il~SAT 657 (1112)
...+..++..+....+++++.-.
T Consensus 142 -~~~~~~l~~~~~~~~~~~~vGD~ 164 (459)
T 3upu_A 142 -RKLFKILLSTIPPWCTIIGIGDN 164 (459)
T ss_dssp -HHHHHHHHHHSCTTCEEEEEECT
T ss_pred -HHHHHHHHHhccCCCEEEEECCH
Confidence 33555566666555566665533
|
| >3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00026 Score=87.59 Aligned_cols=72 Identities=15% Similarity=0.125 Sum_probs=54.9
Q ss_pred CCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001261 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
..+++-|.+++. .....++|.|+.|||||.+.+.-+...+.... .....+|+|++|+.++.++...+..++.
T Consensus 8 ~~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~----~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 8 DSLNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIAWLMSVEN----CSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp TTCCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSC----CCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred hcCCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCC----CChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 367899999997 34677999999999999876665655554321 1234799999999999999988887653
|
| >2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00027 Score=88.70 Aligned_cols=69 Identities=20% Similarity=0.253 Sum_probs=54.3
Q ss_pred CCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH
Q 001261 487 YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 487 ~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~ 562 (1112)
...+++.|..|+..++.+.-++|.|+.|+|||.+.. .++.++... .+..+|+++||...+.++...+..
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~-~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHH-HHHHHHHTT------CSSCEEEEESSHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHH-HHHHHHHHc------CCCcEEEEcCcHHHHHHHHHHHHH
Confidence 456789999999999988888999999999998643 444454432 356799999999999888777654
|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=3e-05 Score=93.86 Aligned_cols=127 Identities=17% Similarity=0.153 Sum_probs=81.4
Q ss_pred CCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhc
Q 001261 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM 567 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~ 567 (1112)
..+++.|..++..++.+..+++.|+.|+|||++ +..++..+.. .+..+++++||...+..+...+
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~-i~~l~~~l~~-------~g~~Vl~~ApT~~Aa~~L~e~~------- 252 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTT-TKAVADLAES-------LGLEVGLCAPTGKAARRLGEVT------- 252 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHH-HHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHH-------
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHH-HHHHHHHHHh-------cCCeEEEecCcHHHHHHhHhhh-------
Confidence 357899999999999999999999999999975 3334444433 2567899999998887665432
Q ss_pred CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHH-hcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcC
Q 001261 568 GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILC-TSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646 (1112)
Q Consensus 568 ~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~-~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~ 646 (1112)
+.....+ .+++.... ...........+++||||||+.+. ...+..++..++
T Consensus 253 ~~~a~Ti------------------------h~ll~~~~~~~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~ 304 (574)
T 3e1s_A 253 GRTASTV------------------------HRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVP 304 (574)
T ss_dssp TSCEEEH------------------------HHHTTEETTEESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSC
T ss_pred cccHHHH------------------------HHHHcCCcchhhhhhcccccCCEEEEcCccCCC----HHHHHHHHHhCc
Confidence 2211111 11110000 000001233467899999999753 346667777777
Q ss_pred CCCcEEEEecc
Q 001261 647 PDRQTVLFSAT 657 (1112)
Q Consensus 647 ~~~q~il~SAT 657 (1112)
...++|++.-.
T Consensus 305 ~~~~lilvGD~ 315 (574)
T 3e1s_A 305 PGARVLLVGDT 315 (574)
T ss_dssp TTCEEEEEECT
T ss_pred CCCEEEEEecc
Confidence 77777776544
|
| >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00014 Score=89.40 Aligned_cols=69 Identities=20% Similarity=0.253 Sum_probs=54.4
Q ss_pred CCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH
Q 001261 487 YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 487 ~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~ 562 (1112)
+..+++.|..|+..++.+.-++|.||+|+|||.+.. .++.++... .+..+|+++||...+.++...+..
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~-~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHH-HHHHHHHTS------SSCCEEEEESSHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHH-HHHHHHHHc------CCCeEEEEeCcHHHHHHHHHHHHh
Confidence 456789999999999988888999999999998644 344444432 356899999999999988777654
|
| >1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1 | Back alignment and structure |
|---|
Probab=97.71 E-value=4.7e-05 Score=72.71 Aligned_cols=83 Identities=18% Similarity=0.205 Sum_probs=62.3
Q ss_pred cCeEEEEEe--cCCC---ccchhhcccchhhhhHHhhhCCeEeccceeeCC-CC-CCC------CCCCceEEEEEeCCHH
Q 001261 1011 EHYEAELEI--NDFP---QNARWKVTHKETLGPISEWTGAAITTRGQYFPP-SR-IAG------PGERKLYLFIEGPTEQ 1077 (1112)
Q Consensus 1011 ~~~~~~~~I--Nd~p---q~~R~~~t~~~~~~~i~~~tg~~i~~kG~~~~~-~~-~~~------~~~~~Lyl~ie~~~~~ 1077 (1112)
..+...|.| .+|| -.-+..=..+.|+.+|++.|||.|+++|+..-. ++ ... ...-+||++|.|++..
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHH
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHH
Confidence 345665555 5677 333777799999999999999999998864211 11 111 1245999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 001261 1078 SVKRAKAELKRVLEDF 1093 (1112)
Q Consensus 1078 ~v~~A~~~i~~~~~e~ 1093 (1112)
.|++|+.+|+.||.+.
T Consensus 85 ~~~~A~~~I~~ll~~~ 100 (131)
T 1k1g_A 85 NVKKAVEQIRNILKQG 100 (131)
T ss_dssp HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999999763
|
| >2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00011 Score=68.67 Aligned_cols=82 Identities=20% Similarity=0.281 Sum_probs=60.6
Q ss_pred eEEEEEe--c-CCCc---cchhhcccchhhhhHHhhhCCeEeccce---eeCCCCCCCCCCCceEEEEEeCCHHHHHHHH
Q 001261 1013 YEAELEI--N-DFPQ---NARWKVTHKETLGPISEWTGAAITTRGQ---YFPPSRIAGPGERKLYLFIEGPTEQSVKRAK 1083 (1112)
Q Consensus 1013 ~~~~~~I--N-d~pq---~~R~~~t~~~~~~~i~~~tg~~i~~kG~---~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~ 1083 (1112)
+...|.| . .||. ..+-.=..+.|+.+|++.|||.|.++|+ |+.+.... ...-+||++|.|++...|++|+
T Consensus 12 ~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~-e~~e~l~V~I~a~~~e~i~~A~ 90 (119)
T 2yqr_A 12 VQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGR-EAFEPMYIYISHPKPEGLAAAK 90 (119)
T ss_dssp EEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSS-CCSSBCEEEEEESSHHHHHHHH
T ss_pred EEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCcccccccccc-ccCCCcEEEEEeCCHHHHHHHH
Confidence 3444443 4 2563 3333346789999999999999999986 44443322 2346899999999999999999
Q ss_pred HHHHHHHHHHHH
Q 001261 1084 AELKRVLEDFTN 1095 (1112)
Q Consensus 1084 ~~i~~~~~e~~~ 1095 (1112)
.+|+.||.+.-.
T Consensus 91 ~~Ie~Ll~~v~~ 102 (119)
T 2yqr_A 91 KLCENLLQTVHA 102 (119)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHhhchHH
Confidence 999999987653
|
| >3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00026 Score=77.92 Aligned_cols=122 Identities=14% Similarity=0.128 Sum_probs=89.0
Q ss_pred ccchhHHHHHHHHHhhhcC-CeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcc
Q 001261 696 PESDRFLRLLELLGEWYEK-GKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVA 774 (1112)
Q Consensus 696 ~~~~k~~~ll~~l~~~~~~-~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~ 774 (1112)
..+.|+..|-.+|..+... .+||||++.....+.+..+|...++.+..+.|......+. -.++...|.+.|...
T Consensus 106 ~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-----~~~~~~~i~Lltsag 180 (328)
T 3hgt_A 106 ENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-----ANDFSCTVHLFSSEG 180 (328)
T ss_dssp HTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSC
T ss_pred HcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-----cccCCceEEEEECCC
Confidence 3578888888888776654 4999999999999999999999999999999986553221 124555665657766
Q ss_pred cccCC-----CCCccEEEEeCCCCCHhHH-HHHhcccCCCC----CccEEEEEecCCc
Q 001261 775 ARGLD-----VKELELVINFDAPNHYEDY-VHRVGRTGRAG----RKGCAITFISEED 822 (1112)
Q Consensus 775 ~~GlD-----i~~v~~VI~~d~p~s~~~y-~QriGR~gR~G----~~g~~i~~~~~~d 822 (1112)
.-|+| ...+++||.||..|++..= +|.+-|+.|.| +.-.+|.|++..-
T Consensus 181 ~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~T 238 (328)
T 3hgt_A 181 INFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINS 238 (328)
T ss_dssp CCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTS
T ss_pred CCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCC
Confidence 66675 6789999999999998774 99998888873 2345777887644
|
| >2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.003 Score=72.00 Aligned_cols=73 Identities=12% Similarity=0.105 Sum_probs=58.1
Q ss_pred CChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhc
Q 001261 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM 567 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~ 567 (1112)
.|+|+|...+..+...+-+++..+-+.|||.+++..++..+... .+..+++++||...|..++..+..++..+
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~------~g~~v~~vA~t~~qA~~vf~~i~~mi~~~ 235 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS------SSCEEEEEESSHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 67899999998776556788899999999998777666554432 35679999999999998888888877654
|
| >1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0041 Score=77.12 Aligned_cols=71 Identities=18% Similarity=0.166 Sum_probs=54.2
Q ss_pred CChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001261 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
.+++-|.+++.. .+..++|.|..|||||.+.+--+...+.... -....+|+|+.|+..|.++...+...+.
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~----~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG----YQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHC----CCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcC----CCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 478999999875 3678899999999999876666655554311 1234789999999999999988887654
|
| >2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0015 Score=62.51 Aligned_cols=76 Identities=21% Similarity=0.253 Sum_probs=54.0
Q ss_pred EEEecCCCcc-chhhc--ccchhhhhHHhhhCCeEecccee--eCCCC------CCC--CCCCceEEEEEeCCHH-----
Q 001261 1016 ELEINDFPQN-ARWKV--THKETLGPISEWTGAAITTRGQY--FPPSR------IAG--PGERKLYLFIEGPTEQ----- 1077 (1112)
Q Consensus 1016 ~~~INd~pq~-~R~~~--t~~~~~~~i~~~tg~~i~~kG~~--~~~~~------~~~--~~~~~Lyl~ie~~~~~----- 1077 (1112)
.|.+++||-- ..-+| ..+.|+.+|++.|||.|.+||+= ....+ .|. ..+-+||++|+|.+..
T Consensus 7 ~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~~~~~~ 86 (140)
T 2bl5_A 7 YVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEL 86 (140)
T ss_dssp ECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCCHHHHH
T ss_pred EcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCchhhHHH
Confidence 3456677732 22233 58999999999999999999852 10000 011 1356799999998874
Q ss_pred HHHHHHHHHHHHHH
Q 001261 1078 SVKRAKAELKRVLE 1091 (1112)
Q Consensus 1078 ~v~~A~~~i~~~~~ 1091 (1112)
.|++|+.+|+.+|.
T Consensus 87 ~l~~A~~~I~~lL~ 100 (140)
T 2bl5_A 87 KLKRAVEEVKKLLV 100 (140)
T ss_dssp HHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHCC
Confidence 89999999999986
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.01 Score=60.57 Aligned_cols=39 Identities=18% Similarity=0.055 Sum_probs=28.0
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccc
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT 549 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Pt 549 (1112)
.|+-.++.|++|+|||+.++-.+.+... .+..++|+.|.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~--------~g~~v~~~~~~ 40 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKL--------GKKKVAVFKPK 40 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH--------TTCEEEEEEEC
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHH--------CCCeEEEEeec
Confidence 4666788999999999876555544432 24578888886
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.011 Score=59.84 Aligned_cols=32 Identities=34% Similarity=0.281 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHH---------cCCCEEEEcCCCChHHHHHH
Q 001261 491 MPIQAQALPVIM---------SGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 491 t~iQ~~ai~~il---------~g~dvii~a~TGsGKT~~~l 522 (1112)
.+.|..++..+. .|..++++||+|+|||+.+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 455666665543 46789999999999997533
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0076 Score=61.78 Aligned_cols=39 Identities=18% Similarity=0.099 Sum_probs=28.6
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccc
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT 549 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Pt 549 (1112)
.|+-.+++|++|||||++++-.+.+... .+.+++|+.|.
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~--------~g~kV~v~k~~ 45 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKI--------AKQKIQVFKPE 45 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH--------TTCCEEEEEEC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH--------CCCEEEEEEec
Confidence 3455778899999999876655555432 36789999886
|
| >3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.029 Score=68.15 Aligned_cols=74 Identities=12% Similarity=0.096 Sum_probs=59.0
Q ss_pred CChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcC
Q 001261 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMG 568 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~ 568 (1112)
.|+|+|...+..+-..+-+++..+-|+|||.+....++..+... .+..+++++||...|..++..++.++..++
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~------~~~~i~~va~t~~qA~~~~~~i~~~i~~~p 236 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS------SSCEEEEEESSHHHHHHHHHHHHHHHTTSC
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC------CCCeEEEEECCHHHHHHHHHHHHHHHHhCh
Confidence 57899999998775567789999999999997776666555442 256799999999999999988888776543
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0084 Score=63.00 Aligned_cols=91 Identities=14% Similarity=0.148 Sum_probs=51.6
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQ 582 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~ 582 (1112)
.|.-+++.|++|+|||++++-.+.+... .|.+++|+.|...- . ....++..+|+..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~--------~g~kVli~~~~~d~--r---~~~~i~srlG~~~----------- 66 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEY--------ADVKYLVFKPKIDT--R---SIRNIQSRTGTSL----------- 66 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHH--------TTCCEEEEEECCCG--G---GCSSCCCCCCCSS-----------
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHh--------cCCEEEEEEeccCc--h---HHHHHHHhcCCCc-----------
Confidence 4556778899999999876665555432 35678888775421 0 0001122222110
Q ss_pred HHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhh
Q 001261 583 QISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRM 629 (1112)
Q Consensus 583 ~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~ 629 (1112)
..+.+.+...+...+... ..-..+++|||||++.+
T Consensus 67 --------~~~~~~~~~~i~~~i~~~----~~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 67 --------PSVEVESAPEILNYIMSN----SFNDETKVIGIDEVQFF 101 (223)
T ss_dssp --------CCEEESSTHHHHHHHHST----TSCTTCCEEEECSGGGS
T ss_pred --------cccccCCHHHHHHHHHHH----hhCCCCCEEEEecCccC
Confidence 123345566666655432 11235789999999964
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=95.90 E-value=0.035 Score=64.13 Aligned_cols=130 Identities=16% Similarity=0.164 Sum_probs=72.9
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc-c-chhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHH
Q 001261 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA-P-TRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ 583 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~-P-treLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~ 583 (1112)
-++++|++|+|||+.....+. ++.. .|.++++++ . .+.-+ ...+..++...++.+.....+..
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~-~l~~-------~G~kVllv~~D~~r~~a---~eqL~~~~~~~gv~~~~~~~~~d---- 163 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAY-FYKK-------RGYKVGLVAADVYRPAA---YDQLLQLGNQIGVQVYGEPNNQN---- 163 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHH-HHHH-------TTCCEEEEEECCSCHHH---HHHHHHHHHTTTCCEECCTTCSC----
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHH-------cCCeEEEEecCccchhH---HHHHHHHHHhcCCceeeccccCC----
Confidence 467779999999986544333 2322 244565555 3 33333 23455555556665543332221
Q ss_pred HHHHhcCCeEEEeCchHHH-HHHHhcCCcccccCCceEEEeccchhhh---ccCChhHHHHHHHhcCCCCcEEEEecccc
Q 001261 584 ISELKRGTEIVVCTPGRMI-DILCTSGGKITNLRRVTYLVMDEADRMF---DMGFEPQITRIVQNIRPDRQTVLFSATFP 659 (1112)
Q Consensus 584 ~~~l~~~~~IvV~Tp~~L~-~~l~~~~~~~~~l~~i~~vViDEah~~~---~~gf~~~i~~il~~~~~~~q~il~SAT~~ 659 (1112)
|..+. ..+.. .....+++||||.+-++. +..+...+..++..+.++.-+++++|+..
T Consensus 164 --------------p~~i~~~al~~-----a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~g 224 (433)
T 3kl4_A 164 --------------PIEIAKKGVDI-----FVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIG 224 (433)
T ss_dssp --------------HHHHHHHHHHH-----TTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGG
T ss_pred --------------HHHHHHHHHHH-----HHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccc
Confidence 11111 12211 123468899999998643 33355667777777777777788888865
Q ss_pred HHHHHHHHHh
Q 001261 660 RQVEILARKV 669 (1112)
Q Consensus 660 ~~~~~l~~~~ 669 (1112)
......+..|
T Consensus 225 q~a~~~a~~f 234 (433)
T 3kl4_A 225 QKAYDLASRF 234 (433)
T ss_dssp GGGHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 5444444433
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0077 Score=62.46 Aligned_cols=39 Identities=15% Similarity=0.101 Sum_probs=28.7
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccch
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTR 550 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptr 550 (1112)
|+-.+++|++|||||+.++--+.+... .+.++||+.|..
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~--------~g~kVli~k~~~ 66 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQF--------AKQHAIVFKPCI 66 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH--------TTCCEEEEECC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH--------CCCEEEEEEecc
Confidence 444567899999999887776666543 367899999864
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=95.53 E-value=0.023 Score=59.39 Aligned_cols=40 Identities=15% Similarity=0.087 Sum_probs=30.5
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccch
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTR 550 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptr 550 (1112)
.|+-.+++|++|||||+.++--+.++.. .|.+++|+-|..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~--------~g~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQI--------AQYKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHT--------TTCCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH--------CCCeEEEEeecC
Confidence 4666788899999999887777666533 367889998864
|
| >3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.018 Score=66.35 Aligned_cols=107 Identities=21% Similarity=0.206 Sum_probs=60.7
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHH
Q 001261 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQIS 585 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~ 585 (1112)
-.++.|+.|||||..+.- ++ . ....||++||++++..|.+.+... +..
T Consensus 163 v~~I~G~aGsGKTt~I~~-~~----~--------~~~~lVlTpT~~aa~~l~~kl~~~----~~~--------------- 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILS-RV----N--------FEEDLILVPGRQAAEMIRRRANAS----GII--------------- 210 (446)
T ss_dssp EEEEEECTTSCHHHHHHH-HC----C--------TTTCEEEESCHHHHHHHHHHHTTT----SCC---------------
T ss_pred EEEEEcCCCCCHHHHHHH-Hh----c--------cCCeEEEeCCHHHHHHHHHHhhhc----Ccc---------------
Confidence 367789999999975432 11 1 124599999999998776655321 110
Q ss_pred HHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEecc
Q 001261 586 ELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSAT 657 (1112)
Q Consensus 586 ~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT 657 (1112)
....+-|.|...++. +.. . ...-.+++||||||- |++.+ .+..++..++. .++|++.-+
T Consensus 211 ---~~~~~~V~T~dsfL~---~~~-~-~~~~~~d~liiDE~s-m~~~~---~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 211 ---VATKDNVRTVDSFLM---NYG-K-GARCQFKRLFIDEGL-MLHTG---CVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp ---CCCTTTEEEHHHHHH---TTT-S-SCCCCCSEEEEETGG-GSCHH---HHHHHHHHTTC-SEEEEEECT
T ss_pred ---ccccceEEEeHHhhc---CCC-C-CCCCcCCEEEEeCcc-cCCHH---HHHHHHHhCCC-CEEEEecCc
Confidence 112334777766532 211 1 111247899999998 44433 33333444433 556666554
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.014 Score=57.34 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=15.9
Q ss_pred cCCCEEEEcCCCChHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~ 520 (1112)
.|..++++|++|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 678899999999999974
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.1 Score=52.15 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
...++++|++|+|||..+.
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4578999999999997543
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.08 E-value=0.16 Score=58.56 Aligned_cols=131 Identities=15% Similarity=0.112 Sum_probs=70.7
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc--cchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHH
Q 001261 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ 583 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~--PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~ 583 (1112)
-++++|++|+|||+...-.+ .++.. .|.++++++ |.+.-+. ..+..++...++.+.....+......
T Consensus 102 vIlivG~~G~GKTTt~~kLA-~~l~~-------~G~kVllv~~D~~R~aa~---eqL~~~~~~~gvpv~~~~~~~dp~~i 170 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLA-RYFQK-------RGYKVGVVCSDTWRPGAY---HQLRQLLDRYHIEVFGNPQEKDAIKL 170 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHH-HHHHT-------TTCCEEEEECCCSSTHHH---HHHHHHHGGGTCEEECCTTCCCHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH-HHHHH-------CCCeEEEEeCCCcchhHH---HHHHHHHHhcCCcEEecCCCCCHHHH
Confidence 46778999999998654333 33332 255666665 5554443 45566666677766544333221111
Q ss_pred HHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhc-cCChhHHHHHHHhcCCCCcEEEEeccccHHH
Q 001261 584 ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQV 662 (1112)
Q Consensus 584 ~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~-~gf~~~i~~il~~~~~~~q~il~SAT~~~~~ 662 (1112)
+ .+.+.. .....+++||||.+=++.. ......+..+.....++.-++++.||.....
T Consensus 171 ~-----------------~~al~~-----a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a 228 (443)
T 3dm5_A 171 A-----------------KEGVDY-----FKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA 228 (443)
T ss_dssp H-----------------HHHHHH-----HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH
T ss_pred H-----------------HHHHHH-----HHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH
Confidence 1 111111 1112477888888865321 1133345556666677777778888865444
Q ss_pred HHHHHHh
Q 001261 663 EILARKV 669 (1112)
Q Consensus 663 ~~l~~~~ 669 (1112)
...+..|
T Consensus 229 ~~~a~~f 235 (443)
T 3dm5_A 229 YNQALAF 235 (443)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444333
|
| >3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.027 Score=58.30 Aligned_cols=40 Identities=20% Similarity=0.114 Sum_probs=28.2
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccch
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTR 550 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptr 550 (1112)
.|.-.+++|++|||||+.++-.+.+... .+.+++|+.|..
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~--------~g~kvli~kp~~ 66 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIY--------AKQKVVVFKPAI 66 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHH--------TTCCEEEEEEC-
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHH--------cCCceEEEEecc
Confidence 4566788999999999876655544432 256789998854
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.19 Score=51.50 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=18.1
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHh
Q 001261 505 RDCIGVAKTGSGKTLAFVLPMLRHIK 530 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~ 530 (1112)
..+++.|++|+|||..+. .+...+.
T Consensus 55 ~~~~l~G~~GtGKT~la~-~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA-AIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHH-HHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 679999999999997533 3444443
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=94.86 E-value=0.15 Score=51.03 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=17.7
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHI 529 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l 529 (1112)
...++++|++|+|||..+ ..+...+
T Consensus 43 ~~~~ll~G~~G~GKT~l~-~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV-EGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHH-HHHHHHH
T ss_pred CCceEEECCCCCCHHHHH-HHHHHHH
Confidence 357999999999999753 3344443
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=94.83 E-value=0.098 Score=58.20 Aligned_cols=25 Identities=16% Similarity=0.046 Sum_probs=17.9
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHI 529 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l 529 (1112)
+..+++.||+|+|||..+ -.+...+
T Consensus 37 ~~~lll~G~~GtGKT~la-~~i~~~~ 61 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL-QAAGNEA 61 (324)
T ss_dssp CSSEEEECSSSSSHHHHH-HHHHHHH
T ss_pred CCeEEEECCCCCcHHHHH-HHHHHHH
Confidence 368999999999999753 3344443
|
| >1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* | Back alignment and structure |
|---|
Probab=94.83 E-value=0.067 Score=54.48 Aligned_cols=39 Identities=15% Similarity=0.066 Sum_probs=28.6
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccc
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT 549 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Pt 549 (1112)
.|+-.++.|++|||||+-.+-.+-++... +.+++|+.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~--------~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIA--------QYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHT--------TCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHc--------CCeEEEEccc
Confidence 35667888999999997666555555443 4678999886
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.19 Score=55.53 Aligned_cols=28 Identities=11% Similarity=-0.034 Sum_probs=20.1
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhc
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKD 531 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~ 531 (1112)
.+..+++.|++|+|||++ +-.++..+..
T Consensus 44 ~~~~lli~GpPGTGKT~~-v~~v~~~L~~ 71 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQL-VNDVMDELIT 71 (318)
T ss_dssp CCCEEEEECCCSHHHHHH-HHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHH-HHHHHHHHHH
Confidence 345799999999999975 4445555543
|
| >2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.056 Score=65.39 Aligned_cols=113 Identities=22% Similarity=0.336 Sum_probs=74.8
Q ss_pred CChHHHHHHHHHHHc--CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhh
Q 001261 489 KPMPIQAQALPVIMS--GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKV 566 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~--g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~ 566 (1112)
.+|.-|.+++..++. ....++.|+-|.|||.+..+.+- .+.. .++|.+||.+-+..+. .|...
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a-~~~~----------~~~vtAP~~~a~~~l~----~~~~~ 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLIS-RIAG----------RAIVTAPAKASTDVLA----QFAGE 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHH-HSSS----------CEEEECSSCCSCHHHH----HHHGG
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHH-HHHh----------CcEEECCCHHHHHHHH----HHhhC
Confidence 689999999998886 33468889999999965554443 3211 3689999988765432 22211
Q ss_pred cCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcC
Q 001261 567 MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646 (1112)
Q Consensus 567 ~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~ 646 (1112)
.|-+..|..++. .+..+++||||||=.+- .+.+..++...
T Consensus 240 -------------------------~i~~~~Pd~~~~----------~~~~~dlliVDEAAaIp----~pll~~ll~~~- 279 (671)
T 2zpa_A 240 -------------------------KFRFIAPDALLA----------SDEQADWLVVDEAAAIP----APLLHQLVSRF- 279 (671)
T ss_dssp -------------------------GCCBCCHHHHHH----------SCCCCSEEEEETGGGSC----HHHHHHHHTTS-
T ss_pred -------------------------CeEEeCchhhhh----------CcccCCEEEEEchhcCC----HHHHHHHHhhC-
Confidence 144556765321 23458899999999753 56667776533
Q ss_pred CCCcEEEEecccc
Q 001261 647 PDRQTVLFSATFP 659 (1112)
Q Consensus 647 ~~~q~il~SAT~~ 659 (1112)
..|+||.|..
T Consensus 280 ---~~v~~~tTv~ 289 (671)
T 2zpa_A 280 ---PRTLLTTTVQ 289 (671)
T ss_dssp ---SEEEEEEEBS
T ss_pred ---CeEEEEecCC
Confidence 3688888864
|
| >3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A* | Back alignment and structure |
|---|
Probab=94.50 E-value=0.067 Score=70.74 Aligned_cols=129 Identities=18% Similarity=0.114 Sum_probs=80.2
Q ss_pred CCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhc
Q 001261 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM 567 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~ 567 (1112)
.++|+-|.++|..- +.+++|.|.-|||||.+.+--++..+..... .-....+|+|++|+..|..+...+...+...
T Consensus 9 ~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~--~~~~~~il~~Tft~~aa~e~~~ri~~~l~~~ 84 (1232)
T 3u4q_A 9 STWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEEN--PIDVDRLLVVTFTNASAAEMKHRIAEALEKE 84 (1232)
T ss_dssp -CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSS--CCCGGGEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCC--CCCccceEEEeccHHHHHHHHHHHHHHHHHH
Confidence 35789999998763 8899999999999999887777777665321 0123479999999999999998887754321
Q ss_pred CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccch
Q 001261 568 GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD 627 (1112)
Q Consensus 568 ~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah 627 (1112)
... .... ......+..-..+-|+|...|+.-+.........+.. .+-|+||..
T Consensus 85 ~~~-----~~~~-~~~~~~~~~~~~~~i~T~hsf~~~~l~~~~~~~~~~~-~f~~~d~~~ 137 (1232)
T 3u4q_A 85 LVQ-----RPGS-LHIRRQLSLLNRASISTLHSFCLQVLKKYYYLIDLDP-GFRIADQTE 137 (1232)
T ss_dssp HHH-----STTC-HHHHHHHHHTTTSEEECHHHHHHHHHHHHGGGTTCCT-TCEECCHHH
T ss_pred hhc-----Ccch-HHHHHHHhccCCCeEEeHHHHHHHHHHhhHHhcCCCC-CCeeCCHHH
Confidence 000 0111 1111111112356789988876555443222222321 233778765
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=94.43 E-value=0.27 Score=53.01 Aligned_cols=18 Identities=22% Similarity=0.067 Sum_probs=15.0
Q ss_pred CCEEEEcCCCChHHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~l 522 (1112)
..+|++||+|+|||..+.
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 469999999999997543
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=94.41 E-value=0.12 Score=64.32 Aligned_cols=96 Identities=18% Similarity=0.218 Sum_probs=74.2
Q ss_pred chhHHH-HHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC
Q 001261 698 SDRFLR-LLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS 772 (1112)
Q Consensus 698 ~~k~~~-ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~ 772 (1112)
..|... ++.++.....+.++||.+|+..-+..++..|... |+.+..+||+++..++..++..+.+|..+|||+|.
T Consensus 400 SGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~ 479 (780)
T 1gm5_A 400 SGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTH 479 (780)
T ss_dssp SSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECT
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 344333 3333333334679999999999988888777653 79999999999999999999999999999999996
Q ss_pred c-ccccCCCCCccEEEEeCCCC
Q 001261 773 V-AARGLDVKELELVINFDAPN 793 (1112)
Q Consensus 773 v-~~~GlDi~~v~~VI~~d~p~ 793 (1112)
. +...+.+.++.+||.-..-.
T Consensus 480 ~ll~~~~~~~~l~lVVIDEaHr 501 (780)
T 1gm5_A 480 ALIQEDVHFKNLGLVIIDEQHR 501 (780)
T ss_dssp THHHHCCCCSCCCEEEEESCCC
T ss_pred HHHhhhhhccCCceEEecccch
Confidence 3 44568889999998655443
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=94.17 E-value=0.17 Score=55.92 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=16.2
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
+..+++.|++|+|||..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999997544
|
| >1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* | Back alignment and structure |
|---|
Probab=94.10 E-value=0.15 Score=52.02 Aligned_cols=135 Identities=13% Similarity=0.068 Sum_probs=73.9
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchh-HHHHHHHHHHHHhhhcCceEEEEeCCCCh---
Q 001261 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRE-LVQQIHSDIRKFAKVMGVRCVPVYGGSGV--- 580 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptre-La~Q~~~~~~~~~~~~~i~~~~~~gg~~~--- 580 (1112)
..+++...+|.|||.+++-.+++.+- .|.+|+|+--... .-. .+. .++..+++.+...--|-..
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g--------~G~rV~~vQF~Kg~~~~---gE~-~~l~~L~v~~~~~g~gf~~~~~ 96 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVG--------HGKNVGVVQFIKGTWPN---GER-NLLEPHGVEFQVMATGFTWETQ 96 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHH--------TTCCEEEEESSCCSSCC---HHH-HHHGGGTCEEEECCTTCCCCGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH--------CCCeEEEEEeeCCCCCc---cHH-HHHHhCCcEEEEcccccccCCC
Confidence 46888899999999998888887754 4778888832211 000 000 1112223333222111110
Q ss_pred --HHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCCh--hHHHHHHHhcCCCCcEEEEec
Q 001261 581 --AQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFE--PQITRIVQNIRPDRQTVLFSA 656 (1112)
Q Consensus 581 --~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~--~~i~~il~~~~~~~q~il~SA 656 (1112)
..+.... -..|.... . ...-..+++|||||+-..+..++. ..+..++...+...-+|+++-
T Consensus 97 ~~~~~~~~a----------~~~l~~a~-~----~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr 161 (196)
T 1g5t_A 97 NREADTAAC----------MAVWQHGK-R----MLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGR 161 (196)
T ss_dssp GHHHHHHHH----------HHHHHHHH-H----HTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECS
T ss_pred CcHHHHHHH----------HHHHHHHH-H----HHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECC
Confidence 0011000 11111111 1 011256899999999877666644 456677777666777777777
Q ss_pred cccHHHHHHH
Q 001261 657 TFPRQVEILA 666 (1112)
Q Consensus 657 T~~~~~~~l~ 666 (1112)
-.|+.+..++
T Consensus 162 ~ap~~l~e~A 171 (196)
T 1g5t_A 162 GCHRDILDLA 171 (196)
T ss_dssp SCCHHHHHHC
T ss_pred CCcHHHHHhC
Confidence 7777766554
|
| >2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.09 E-value=0.054 Score=47.45 Aligned_cols=71 Identities=18% Similarity=0.176 Sum_probs=50.8
Q ss_pred eEEEEEecCCCccchhhc-ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHH
Q 001261 1013 YEAELEINDFPQNARWKV-THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLE 1091 (1112)
Q Consensus 1013 ~~~~~~INd~pq~~R~~~-t~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~~ 1091 (1112)
....|.|.. ..+...+ ..+.++.+|++.|||.|.+-. .+..+...++. +.|.| +...|..|+..|..++.
T Consensus 14 ~~~~i~Ip~--~~ig~IIGkgG~~Ik~I~~~tga~I~i~~----~~~~~~~~er~--v~I~G-~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 14 TVQEIMIPA--GKAGLVIGKGGETIKQLQERAGVKMILIQ----DGSQNTNVDKP--LRIIG-DPYKVQQACEMVMDILR 84 (85)
T ss_dssp EEEEEEECT--TTHHHHHTTTTHHHHHHHHHHTCEEEECS----SSCSSTTSCEE--EEEEE-CHHHHHHHHHHHHHHHT
T ss_pred EEEEEEeCh--hheeeeECCCCHHHHHHHHHHCCEEEEcC----CCCCCCCCceE--EEEEe-CHHHHHHHHHHHHHHhc
Confidence 455677653 2454444 568999999999999999854 22223334554 66779 99999999999999885
Q ss_pred H
Q 001261 1092 D 1092 (1112)
Q Consensus 1092 e 1092 (1112)
|
T Consensus 85 e 85 (85)
T 2opv_A 85 E 85 (85)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B* | Back alignment and structure |
|---|
Probab=93.94 E-value=0.087 Score=65.64 Aligned_cols=72 Identities=14% Similarity=0.093 Sum_probs=55.3
Q ss_pred CCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001261 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
..+++-|.+++.. ....++|.|..|||||.+.+.-+...+.... -....+|+|+.|+..|.++...+..++.
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~----~~p~~IL~vTFTnkAA~Em~~Rl~~~l~ 81 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH----VAPWNILAITFTNKAAREMRERVQSLLG 81 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTC----CCGGGEEEEESSHHHHHHHHHHHHHHHG
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcC----CCHHHeEEEeccHHHHHHHHHHHHHHhc
Confidence 4578999999875 4568999999999999887666665554321 1234789999999999999888887653
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=93.86 E-value=0.19 Score=58.46 Aligned_cols=18 Identities=22% Similarity=0.087 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCChHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~ 521 (1112)
+..+++.|++|+|||..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp SCCEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999753
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=93.69 E-value=0.05 Score=59.28 Aligned_cols=55 Identities=22% Similarity=0.369 Sum_probs=31.1
Q ss_pred CcccccccCCCCHHHHHHHHHCCCCCChHHH-HHHHHHH--HcCCCEEEEcCCCChHHHHH
Q 001261 464 KPIKTWHQTGLTSKIMETIRKLNYEKPMPIQ-AQALPVI--MSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 464 ~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ-~~ai~~i--l~g~dvii~a~TGsGKT~~~ 521 (1112)
.|-.+|.++.-....++.|...-. .+.+ .+.+..+ ..++.+|+.|++|+|||..+
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 344578887766666665553210 0111 1111111 24567999999999999743
|
| >1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1 | Back alignment and structure |
|---|
Probab=93.67 E-value=0.23 Score=43.60 Aligned_cols=60 Identities=22% Similarity=0.160 Sum_probs=46.6
Q ss_pred cchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHHHHHh
Q 001261 1032 HKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLEDFTNQA 1097 (1112)
Q Consensus 1032 ~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~~e~~~~~ 1097 (1112)
.+.++.+|++.|||.|.+-. ...+.+|...=.+.|.|. ..+|..|+..|..+|.+.-...
T Consensus 21 gG~~Ik~I~~~tga~I~I~~-----~~~~~~g~~~r~v~I~G~-~~~v~~A~~~I~~~i~~~~~~r 80 (87)
T 1ec6_A 21 GGKTLVEYQELTGARIQISK-----KGEFLPGTRNRRVTITGS-PAATQAAQYLISQRVTYEQGVR 80 (87)
T ss_dssp GGHHHHHHHHHHCCEEEECC-----TTCBSTTSCEEEEEEESS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHhHHHHHHHhCCEEEEcc-----CCCCCCCCCceEEEEEcC-HHHHHHHHHHHHHHHhcccccc
Confidence 46999999999999998843 112223444556888997 8899999999999999876654
|
| >2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.53 E-value=0.091 Score=44.88 Aligned_cols=71 Identities=18% Similarity=0.155 Sum_probs=51.3
Q ss_pred CeEEEEEecCCCccchhhcc-cchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q 001261 1012 HYEAELEINDFPQNARWKVT-HKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVL 1090 (1112)
Q Consensus 1012 ~~~~~~~INd~pq~~R~~~t-~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~ 1090 (1112)
.+...|.|..- .+...+- .+.++.+|++.|||.|.+-.. .++...=.+.|.|. ..+|+.|+..|..+|
T Consensus 4 ~~~~~i~Ip~~--~vg~iIGkgG~~Ik~I~~~tga~I~i~~~--------~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i 72 (76)
T 2p2r_A 4 TTSHELTIPND--LIGCIIGRQGAKINEIRQMSGAQIKIANP--------VEGSTDRQVTITGS-AASISLAQYLINVRL 72 (76)
T ss_dssp CEEEEEEEEHH--HHHHHHCGGGHHHHHHHHHHCCEEEECCC--------CTTCSEEEEEEEEC-HHHHHHHHHHHHHHH
T ss_pred ceEEEEEEChH--HcceEECCCChHHHHHHHHHCCEEEEcCC--------CCCCCeEEEEEEeC-HHHHHHHHHHHHHHH
Confidence 35556666442 4444443 478999999999999999641 22333446778897 999999999999998
Q ss_pred HHH
Q 001261 1091 EDF 1093 (1112)
Q Consensus 1091 ~e~ 1093 (1112)
.++
T Consensus 73 ~~E 75 (76)
T 2p2r_A 73 SSE 75 (76)
T ss_dssp TTC
T ss_pred Hcc
Confidence 765
|
| >1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A | Back alignment and structure |
|---|
Probab=93.44 E-value=0.11 Score=44.23 Aligned_cols=62 Identities=21% Similarity=0.139 Sum_probs=44.6
Q ss_pred chhhc-ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q 001261 1026 ARWKV-THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLEDF 1093 (1112)
Q Consensus 1026 ~R~~~-t~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~~e~ 1093 (1112)
+...+ ..+.++.+|++.|||.|.+-. ...+.+|...-.+.|.|. ..+|+.|+..|..+|.|+
T Consensus 14 vg~IIGkgG~~Ik~I~~~tga~I~i~~-----~~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~ee 76 (76)
T 1dtj_A 14 VGAILGKGGKTLVEYQELTGARIQISK-----KGEFLPGTRNRRVTITGS-PAATQAAQYLISQRVTYE 76 (76)
T ss_dssp HHHHHCSTTHHHHHHHHHHCCEEEECC-----TTCCSTTCCEEEEEEEES-HHHHHHHHHHHHHHCC--
T ss_pred cceEECCCchHHHHHHHHhCCEEEECc-----CCCCCCCCceeEEEEEeC-HHHHHHHHHHHHHHHhcC
Confidence 33333 357899999999999998843 212233445556888897 889999999999998653
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=93.30 E-value=0.17 Score=56.61 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHH----cCC---CEEEEcCCCChHHHHHHHHHHHHHh
Q 001261 491 MPIQAQALPVIM----SGR---DCIGVAKTGSGKTLAFVLPMLRHIK 530 (1112)
Q Consensus 491 t~iQ~~ai~~il----~g~---dvii~a~TGsGKT~~~llp~l~~l~ 530 (1112)
+|+|..++..+. .|+ -+|+.|+.|+|||..+. .+...+.
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~-~la~~l~ 49 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY-ALSRYLL 49 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH-HHHHHHT
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH-HHHHHHh
Confidence 467776665543 444 38999999999997544 3444443
|
| >1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A | Back alignment and structure |
|---|
Probab=93.29 E-value=0.18 Score=43.75 Aligned_cols=71 Identities=17% Similarity=0.214 Sum_probs=53.8
Q ss_pred CeEEEEEecCCCccchhhccc-chhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q 001261 1012 HYEAELEINDFPQNARWKVTH-KETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVL 1090 (1112)
Q Consensus 1012 ~~~~~~~INd~pq~~R~~~t~-~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~ 1090 (1112)
.+...|.|..- .+...+-+ +.++.+|++.|||.|.+-.. .++...-.+.|.| +..+|+.|+..|..++
T Consensus 6 ~~~~~i~Vp~~--~vg~iIGkgG~~Ik~I~~~tga~I~i~~~--------~~~~~~~~v~I~G-~~~~v~~A~~~I~~~i 74 (82)
T 1zzk_A 6 IITTQVTIPKD--LAGSIIGKGGQRIKQIRHESGASIKIDEP--------LEGSEDRIITITG-TQDQIQNAQYLLQNSV 74 (82)
T ss_dssp CEEEEEEEETT--TGGGGTCGGGHHHHHHHHHHCCEEEECCT--------TSCSSEEEEEEEE-CHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEChH--hcCeeECCCchHHHHHHHHHCCEEEEcCC--------CCCCCceEEEEEe-CHHHHHHHHHHHHHHH
Confidence 56777777653 56666654 69999999999999998531 1233334678899 5999999999999999
Q ss_pred HHH
Q 001261 1091 EDF 1093 (1112)
Q Consensus 1091 ~e~ 1093 (1112)
.+.
T Consensus 75 ~~~ 77 (82)
T 1zzk_A 75 KQY 77 (82)
T ss_dssp HHH
T ss_pred Hhc
Confidence 875
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=93.28 E-value=0.25 Score=56.88 Aligned_cols=80 Identities=13% Similarity=0.167 Sum_probs=66.2
Q ss_pred hcCCeEEEEeCCHHHHHHHHHHHHh---cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCccc----ccCCCCCcc
Q 001261 712 YEKGKILIFVHSQEKCDALFRDLLK---HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA----RGLDVKELE 784 (1112)
Q Consensus 712 ~~~~~vLIF~~s~~~~~~l~~~L~~---~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~----~GlDi~~v~ 784 (1112)
..++++||.+|++.-+..++..|.. .++.+..+||+.+..++...+..+..|...|+|+|.-.- .-++...+.
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 141 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 141 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcccccc
Confidence 3567899999999999999999988 588999999999999998899999999999999994221 125667888
Q ss_pred EEEEeCC
Q 001261 785 LVINFDA 791 (1112)
Q Consensus 785 ~VI~~d~ 791 (1112)
+||.-.+
T Consensus 142 ~iViDEa 148 (414)
T 3oiy_A 142 FVFVDDV 148 (414)
T ss_dssp EEEESCH
T ss_pred EEEEeCh
Confidence 8886444
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.24 E-value=0.17 Score=49.06 Aligned_cols=22 Identities=9% Similarity=-0.002 Sum_probs=17.8
Q ss_pred HHcCCCEEEEcCCCChHHHHHH
Q 001261 501 IMSGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 501 il~g~dvii~a~TGsGKT~~~l 522 (1112)
...+..+++.|++|+|||..+-
T Consensus 21 a~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHHH
T ss_pred hCCCCCEEEECCCCCCHHHHHH
Confidence 3467789999999999997543
|
| >2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 | Back alignment and structure |
|---|
Probab=93.20 E-value=0.29 Score=43.66 Aligned_cols=73 Identities=16% Similarity=0.244 Sum_probs=57.2
Q ss_pred cCeEEEEEecCCCccchhhccc-chhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHH
Q 001261 1011 EHYEAELEINDFPQNARWKVTH-KETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRV 1089 (1112)
Q Consensus 1011 ~~~~~~~~INd~pq~~R~~~t~-~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~ 1089 (1112)
..+...|.|..- ..+..+=+ +.++..|++.|||.|.+- + ++++-=.+.|.|+ ...|.+|+..|..+
T Consensus 15 ~~~t~~i~Ip~~--~ig~IIG~gG~~Ik~I~~etg~~I~i~-----~-----~~~~~~~V~I~G~-~e~v~~A~~~I~~i 81 (94)
T 2cte_A 15 TQASATVAIPKE--HHRFVIGKNGEKLQDLELKTATKIQIP-----R-----PDDPSNQIKITGT-KEGIEKARHEVLLI 81 (94)
T ss_dssp SCEEEEEECCTT--THHHHHCSSSCHHHHHHHHTTCCCBCC-----C-----TTSSCCEEEEEEC-HHHHHHHHHHHHHH
T ss_pred CceEEEEEEChH--HeeeeECCCChhHHHHHHHHCCEEEeC-----C-----CCCCCCeEEEEEC-HHHHHHHHHHHHHH
Confidence 357888888754 78888876 599999999999999882 1 1111126889999 99999999999999
Q ss_pred HHHHHHH
Q 001261 1090 LEDFTNQ 1096 (1112)
Q Consensus 1090 ~~e~~~~ 1096 (1112)
+.+....
T Consensus 82 ~~~~~~~ 88 (94)
T 2cte_A 82 SAEQDKR 88 (94)
T ss_dssp HHHHHTC
T ss_pred hhccccc
Confidence 9887644
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=93.08 E-value=0.3 Score=55.43 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=17.1
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFVLPMLRHI 529 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l 529 (1112)
+.+++.|++|+|||..+ ..++..+
T Consensus 46 ~~vll~G~~G~GKT~la-~~l~~~~ 69 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVS-KYIFNEI 69 (384)
T ss_dssp CEEEEEECTTSSHHHHH-HHHHHHH
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHH
Confidence 46999999999999753 3344433
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=92.85 E-value=0.19 Score=55.35 Aligned_cols=54 Identities=20% Similarity=0.405 Sum_probs=30.2
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHH-HHH-HH-HHcCCCEEEEcCCCChHHHHH
Q 001261 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQA-QAL-PV-IMSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 465 pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~-~ai-~~-il~g~dvii~a~TGsGKT~~~ 521 (1112)
|-.+|.+++-...+++.|...-. .|+.. +.+ .. +..++.+++.||+|+|||+.+
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~---~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQ---YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 44678888766666665543100 01000 000 00 124567999999999999753
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=92.80 E-value=0.78 Score=46.94 Aligned_cols=40 Identities=15% Similarity=0.196 Sum_probs=24.0
Q ss_pred CCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEec
Q 001261 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSA 656 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SA 656 (1112)
....+|||||+|.+... ....+..++........+|++|.
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~~ 140 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSCN 140 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEeC
Confidence 34679999999987532 23345555555555554554443
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=92.76 E-value=0.22 Score=56.36 Aligned_cols=19 Identities=26% Similarity=0.286 Sum_probs=15.6
Q ss_pred cCCCEEEEcCCCChHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~ 521 (1112)
.+..++++|++|+|||..+
T Consensus 43 ~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCEEECBCTTSSHHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 3467999999999999743
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.73 E-value=0.31 Score=56.18 Aligned_cols=55 Identities=22% Similarity=0.366 Sum_probs=35.0
Q ss_pred CCcccccccCCCCHHHHHHHHH---CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHH
Q 001261 463 PKPIKTWHQTGLTSKIMETIRK---LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 463 p~pi~~~~~~~L~~~l~~~l~~---~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~ 520 (1112)
..|-.+|.+.+--..+.+.|.. +.+..|--++...++ ..+.+|+.||+|+|||+.
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLL 231 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHH
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHH
Confidence 4567789999877777776653 112223222222211 246799999999999975
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=92.39 E-value=0.58 Score=51.85 Aligned_cols=51 Identities=16% Similarity=0.352 Sum_probs=29.9
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHH-----cCCCEEEEcCCCChHHHHH
Q 001261 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIM-----SGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 465 pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il-----~g~dvii~a~TGsGKT~~~ 521 (1112)
|-.+|.++.-...+++.|...-. .|. ..|.++ ..+.+|+.||+|+|||+.+
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~---~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 44578888777777666553210 000 001111 1356999999999999754
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=92.30 E-value=0.27 Score=55.82 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=16.7
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHH
Q 001261 506 DCIGVAKTGSGKTLAFVLPMLRHI 529 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l 529 (1112)
.++++|++|+|||... ..++..+
T Consensus 46 ~~li~G~~G~GKTtl~-~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL-RKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHH
T ss_pred eEEEECCCCCCHHHHH-HHHHHHH
Confidence 6899999999999753 3344443
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=92.28 E-value=0.18 Score=55.90 Aligned_cols=41 Identities=15% Similarity=0.184 Sum_probs=25.1
Q ss_pred CCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEec
Q 001261 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSA 656 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SA 656 (1112)
....+|||||+|.|........+..++...+....+|+.+.
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n 144 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITAN 144 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEES
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeC
Confidence 36789999999988622233445555555555555555443
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.22 E-value=0.89 Score=51.86 Aligned_cols=18 Identities=28% Similarity=0.397 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCChHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~ 521 (1112)
.+.+|+.|++|+|||+.+
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 468999999999999754
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=92.08 E-value=0.31 Score=54.32 Aligned_cols=17 Identities=24% Similarity=0.161 Sum_probs=14.8
Q ss_pred CCEEEEcCCCChHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~ 521 (1112)
..+|+.|++|+|||+.+
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 57999999999999753
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=92.03 E-value=1.7 Score=44.93 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=16.3
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHH
Q 001261 506 DCIGVAKTGSGKTLAFVLPMLRHI 529 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l 529 (1112)
.+++.|++|+|||... ..+...+
T Consensus 47 ~~ll~G~~G~GKT~l~-~~~~~~~ 69 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA-RLLAKGL 69 (250)
T ss_dssp EEEEECSTTSCHHHHH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHHh
Confidence 5889999999999753 3334443
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=92.02 E-value=0.16 Score=53.17 Aligned_cols=19 Identities=16% Similarity=0.006 Sum_probs=16.0
Q ss_pred cCCCEEEEcCCCChHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~ 521 (1112)
.+..++++|++|+|||..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4678999999999999753
|
| >2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.95 E-value=0.17 Score=46.31 Aligned_cols=73 Identities=19% Similarity=0.218 Sum_probs=53.0
Q ss_pred EEEEEecCCCccchhhcc-cchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q 001261 1014 EAELEINDFPQNARWKVT-HKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLED 1092 (1112)
Q Consensus 1014 ~~~~~INd~pq~~R~~~t-~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~~e 1092 (1112)
...|.|..- .+...|= .+.++.+|++.|||.|.+-..- .+..+..--.+.|.| +.++|++|+..|..+|.+
T Consensus 8 ~~~i~IP~~--~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~-----~~~~~~~~r~V~I~G-~~e~v~~A~~~I~~~i~e 79 (107)
T 2hh2_A 8 EMTFSIPTH--KCGLVIGRGGENVKAINQQTGAFVEISRQL-----PPNGDPNFKLFIIRG-SPQQIDHAKQLIEEKIEG 79 (107)
T ss_dssp CEEEEEEGG--GTTTTSTTTTCHHHHHHHHSSSEEEECCCC-----CTTCCTTEEEEEEES-CHHHHHHHHHHHHHHSCS
T ss_pred eEEEEECHH--HcCccCCCCcHHHHHHHHHhCCEEEEcCcc-----CCCCCCCceEEEEEC-CHHHHHHHHHHHHHHHhc
Confidence 456666542 5666655 4689999999999999986432 122233345678889 999999999999999887
Q ss_pred HH
Q 001261 1093 FT 1094 (1112)
Q Consensus 1093 ~~ 1094 (1112)
..
T Consensus 80 ~~ 81 (107)
T 2hh2_A 80 PL 81 (107)
T ss_dssp CC
T ss_pred cc
Confidence 64
|
| >1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A | Back alignment and structure |
|---|
Probab=91.95 E-value=0.31 Score=42.96 Aligned_cols=71 Identities=15% Similarity=0.235 Sum_probs=52.2
Q ss_pred CeEEEEEecCCCccchhhc-ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q 001261 1012 HYEAELEINDFPQNARWKV-THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVL 1090 (1112)
Q Consensus 1012 ~~~~~~~INd~pq~~R~~~-t~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~ 1090 (1112)
.+..+|.|..- .+...+ ..+.++.+|++.|||.|.+-.. .| +...=.+.|.|. .++|+.|+..|..+|
T Consensus 13 ~~~~~i~Ip~~--~vg~IIGkgG~~Ik~I~~~tga~I~I~~~------~~--~~~~~~v~I~G~-~e~v~~A~~~I~~~i 81 (89)
T 1j5k_A 13 IITTQVTIPKD--LAGSIIGKGGQRIKQIRHESGASIKIDEP------LE--GSEDRIITITGT-QDQIQNAQYLLQNSV 81 (89)
T ss_dssp EEEEEEEEEHH--HHHHHHCGGGHHHHHHHHHTCCEEEECSC------CS--SSSEEEEEEEEE-HHHHHHHHHHHHHHH
T ss_pred eEEEEEEEChh--hcceeECCCCHhHHHHHHHhCCeEEecCC------CC--CCCccEEEEEcC-HHHHHHHHHHHHHHH
Confidence 46667776432 455555 4579999999999999998531 12 233346778897 899999999999999
Q ss_pred HHH
Q 001261 1091 EDF 1093 (1112)
Q Consensus 1091 ~e~ 1093 (1112)
.+.
T Consensus 82 ~e~ 84 (89)
T 1j5k_A 82 KQY 84 (89)
T ss_dssp HHH
T ss_pred Hhh
Confidence 875
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=91.94 E-value=0.097 Score=57.68 Aligned_cols=18 Identities=22% Similarity=0.194 Sum_probs=15.0
Q ss_pred CCEEEEcCCCChHHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~l 522 (1112)
..+|++|++|+|||..+-
T Consensus 68 ~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 469999999999997543
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=91.82 E-value=0.89 Score=51.24 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=17.9
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHI 529 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l 529 (1112)
+..+++.|++|+|||...- .++..+
T Consensus 45 ~~~vli~G~~G~GKTtl~~-~l~~~~ 69 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVK-FVLSKL 69 (386)
T ss_dssp CCCEEEEECTTSSHHHHHH-HHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHH
Confidence 5679999999999997533 344433
|
| >1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A | Back alignment and structure |
|---|
Probab=91.77 E-value=0.31 Score=43.21 Aligned_cols=71 Identities=20% Similarity=0.218 Sum_probs=52.1
Q ss_pred CeEEEEEecCCCccchhhcc-cchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q 001261 1012 HYEAELEINDFPQNARWKVT-HKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVL 1090 (1112)
Q Consensus 1012 ~~~~~~~INd~pq~~R~~~t-~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~ 1090 (1112)
.+..+|.|..- .+...|= .+.++.+|++.|||.|.+-..- ++...-.+.|.|. ...|+.|+.+|..+|
T Consensus 14 ~~~~~i~Ip~~--~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~--------~g~~~r~v~I~G~-~e~v~~A~~~I~~~i 82 (92)
T 1x4n_A 14 VMTEEYKVPDG--MVGFIIGRGGEQISRIQQESGCKIQIAPDS--------GGLPERSCMLTGT-PESVQSAKRLLDQIV 82 (92)
T ss_dssp CEEEEEEEEHH--HHHHHHCSSSHHHHHHHHHSCCEEEECSCC--------TTCSEEEEEEEEC-HHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChH--HcceeECCCchHHHHHHHHhCCEEEEcCCC--------CCCCccEEEEEeC-HHHHHHHHHHHHHHH
Confidence 45667777442 4555544 4789999999999999985421 2334456788897 899999999999998
Q ss_pred HHH
Q 001261 1091 EDF 1093 (1112)
Q Consensus 1091 ~e~ 1093 (1112)
.+.
T Consensus 83 ~~~ 85 (92)
T 1x4n_A 83 EKG 85 (92)
T ss_dssp HHT
T ss_pred Hhc
Confidence 764
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.48 E-value=0.64 Score=51.58 Aligned_cols=51 Identities=20% Similarity=0.387 Sum_probs=29.5
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHH-----cCCCEEEEcCCCChHHHHH
Q 001261 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIM-----SGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 465 pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il-----~g~dvii~a~TGsGKT~~~ 521 (1112)
|-.+|.+++-...+.+.|...-. .|.+ .|.++ ..+.+|+.||+|+|||+.+
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~---~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVI---LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHHh---CHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 34688888766666665543100 0000 01111 1257999999999999753
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.29 E-value=0.19 Score=57.26 Aligned_cols=54 Identities=22% Similarity=0.345 Sum_probs=30.9
Q ss_pred cccccccCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHH
Q 001261 465 PIKTWHQTGLTSKIMETIRKL---NYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 465 pi~~~~~~~L~~~l~~~l~~~---~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~ 521 (1112)
|-.+|.+.|=-....+.|... .+..|--++...+ ...+.+|+.||+|+|||+.+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi---~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI---AQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCCCEEEESCSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCceEEeCCCCCCHHHHH
Confidence 456888887555555555431 1112211221111 12378999999999999753
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=91.25 E-value=1 Score=49.20 Aligned_cols=52 Identities=19% Similarity=0.318 Sum_probs=28.4
Q ss_pred CCceEEEeccchhhh-ccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHH
Q 001261 616 RRVTYLVMDEADRMF-DMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILAR 667 (1112)
Q Consensus 616 ~~i~~vViDEah~~~-~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~ 667 (1112)
..+++||||++-.+. +......+..+...+.++.-++++.++........+.
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~~~~~~~ 231 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVAR 231 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHH
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHHHHHHHH
Confidence 467899999995432 2112334444455555655555677765444333333
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=91.19 E-value=0.32 Score=54.62 Aligned_cols=42 Identities=10% Similarity=0.317 Sum_probs=26.8
Q ss_pred CCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccc
Q 001261 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
....+|||||+|. ++......+..++...+....+|+.|-.+
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 4577999999998 44444455666666665555555555443
|
| >2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.06 E-value=0.42 Score=43.56 Aligned_cols=70 Identities=13% Similarity=0.167 Sum_probs=50.1
Q ss_pred EEEEEecCCCccchhhcc-cchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q 001261 1014 EAELEINDFPQNARWKVT-HKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLED 1092 (1112)
Q Consensus 1014 ~~~~~INd~pq~~R~~~t-~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~~e 1092 (1112)
..+|.|..- .+...|= .+.++.+|++.|||.|.+... . ++.+--.+.|.|. .++|++|+..|..+|.+
T Consensus 12 ~~~i~Ip~~--~iG~IIGkgG~~Ik~I~~~TGakI~I~~~------~--~~~~er~V~I~G~-~e~v~~A~~~I~~ii~~ 80 (106)
T 2hh3_A 12 GIDVPVPRH--SVGVVIGRSGEMIKKIQNDAGVRIQFKQD------D--GTGPEKIAHIMGP-PDRCEHAARIINDLLQS 80 (106)
T ss_dssp CEEEEEETT--THHHHHTTTTHHHHHHHHHHTCEEEECSS------C--SSSSEEEEEEESS-HHHHHHHHHHHHHHHHH
T ss_pred EEEEEECHH--HcCccCCCCcHHHHHHHHHHCcEEEEecC------C--CCCceeEEEEEeC-HHHHHHHHHHHHHHHhc
Confidence 345666432 4555554 478999999999999998531 0 1223345778886 89999999999999987
Q ss_pred HH
Q 001261 1093 FT 1094 (1112)
Q Consensus 1093 ~~ 1094 (1112)
.-
T Consensus 81 ~~ 82 (106)
T 2hh3_A 81 LR 82 (106)
T ss_dssp HC
T ss_pred cc
Confidence 63
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=90.45 E-value=1.4 Score=47.87 Aligned_cols=47 Identities=17% Similarity=0.320 Sum_probs=29.1
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHH---------HcCCCEEEEcCCCChHHHHH
Q 001261 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVI---------MSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 465 pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~i---------l~g~dvii~a~TGsGKT~~~ 521 (1112)
|-.+|.++.-...+++.|...- .+|.. ..++.+++.||+|+|||+.+
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i----------~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMV----------ILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHT----------HHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHH----------HhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 3457888766666666554311 01111 13568999999999999753
|
| >1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 | Back alignment and structure |
|---|
Probab=90.42 E-value=0.24 Score=44.19 Aligned_cols=75 Identities=20% Similarity=0.226 Sum_probs=53.5
Q ss_pred CCcCeEEEEEecCCCccchhhc-ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHH
Q 001261 1009 MPEHYEAELEINDFPQNARWKV-THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELK 1087 (1112)
Q Consensus 1009 ~~~~~~~~~~INd~pq~~R~~~-t~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~ 1087 (1112)
.|..+..+|.|..- .+...+ ..+.++.+|++.|||.|.+-.. +......++ .+.|.| +...|+.|+..|.
T Consensus 11 ~p~~~~~~i~Ip~~--~vG~IIGkgG~~Ik~I~~~tga~I~I~~~----~~~~~~~~r--~v~I~G-~~~~v~~A~~~I~ 81 (94)
T 1x4m_A 11 GPGNAVQEIMIPAS--KAGLVIGKGGETIKQLQERAGVKMVMIQD----GPQNTGADK--PLRITG-DPYKVQQAKEMVL 81 (94)
T ss_dssp CCCCEEEEEEECHH--HHHHHSCSSSSHHHHHHHHHTSEEEECCS----CCCSSCSCE--EEEEEE-CTTTHHHHHHHHH
T ss_pred CCCcEEEEEEEChh--hcceEECCCCHHHHHHHHHHCCeEEecCC----CCCCCCCce--EEEEEe-CHHHHHHHHHHHH
Confidence 35667888888542 555555 4589999999999999987432 111111334 466789 8889999999999
Q ss_pred HHHHH
Q 001261 1088 RVLED 1092 (1112)
Q Consensus 1088 ~~~~e 1092 (1112)
.+|.+
T Consensus 82 ~~i~~ 86 (94)
T 1x4m_A 82 ELIRD 86 (94)
T ss_dssp HHHCC
T ss_pred HHHhc
Confidence 99865
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=90.25 E-value=0.46 Score=52.03 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=17.3
Q ss_pred cCCCEEEEcCCCChHHHHHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~ 525 (1112)
.+.-++++|++|+|||+.....+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45678888999999998654433
|
| >2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A* | Back alignment and structure |
|---|
Probab=90.15 E-value=0.49 Score=39.88 Aligned_cols=67 Identities=18% Similarity=0.230 Sum_probs=47.4
Q ss_pred eEEEEEecCCCccchhhcc-cchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHH
Q 001261 1013 YEAELEINDFPQNARWKVT-HKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLE 1091 (1112)
Q Consensus 1013 ~~~~~~INd~pq~~R~~~t-~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~~ 1091 (1112)
+...|.|.. ..+...+= .+.++.+|++.|||.|.+-.. +.+.=.+.|.|. ..+|..|+.+|..+|.
T Consensus 5 ~~~~i~ip~--~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~----------~~~er~v~I~G~-~~~v~~A~~~I~~~l~ 71 (73)
T 2axy_A 5 LTIRLLMHG--KEVGSIIGKKGESVKKMREESGARINISEG----------NCPERIITLAGP-TNAIFKAFAMIIDKLE 71 (73)
T ss_dssp EEEEEEEEH--HHHHHHHCGGGHHHHHHHHHHCCEEEECSS----------CCSEEEEEEEEC-HHHHHHHHHHHHHHHH
T ss_pred EEEEEEECh--hHeeeEECCCCHHHHHHHHHHCCEEEEecC----------CCCcEEEEEEeC-HHHHHHHHHHHHHHHh
Confidence 344444433 13444443 468999999999999998431 222335788898 9999999999999987
Q ss_pred H
Q 001261 1092 D 1092 (1112)
Q Consensus 1092 e 1092 (1112)
|
T Consensus 72 e 72 (73)
T 2axy_A 72 E 72 (73)
T ss_dssp C
T ss_pred c
Confidence 6
|
| >1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1 | Back alignment and structure |
|---|
Probab=90.10 E-value=0.88 Score=41.27 Aligned_cols=73 Identities=19% Similarity=0.148 Sum_probs=50.9
Q ss_pred eEEEEEecCCCccchhhcc-cchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHH
Q 001261 1013 YEAELEINDFPQNARWKVT-HKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLE 1091 (1112)
Q Consensus 1013 ~~~~~~INd~pq~~R~~~t-~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~~ 1091 (1112)
....|.|..- .+...+= .+.++.+|++.|||.|.+-..- +..+..--.+.|.|..+ .|+.|+..|..+|.
T Consensus 15 ~~~~i~Ip~~--~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~------~~~~~~~~~V~I~G~~~-~v~~A~~~I~~~i~ 85 (104)
T 1we8_A 15 VFEQLSVPQR--SVGRIIGRGGETIRSICKASGAKITCDKES------EGTLLLSRLIKISGTQK-EVAAAKHLILEKVS 85 (104)
T ss_dssp EEEEEEEETT--THHHHHTTTSHHHHHHHHHHCCEEEECCSS------CCSSSSEEEEEEEEEHH-HHHHHHHHHHHHHH
T ss_pred EEEEEEEChh--heeeeECCCCHHHHHHHHHHCCEEEEecCC------CCCCCCcceEEEEcCHH-HHHHHHHHHHHHHh
Confidence 3556666432 5655554 5789999999999999985421 11111223577889887 79999999999997
Q ss_pred HHH
Q 001261 1092 DFT 1094 (1112)
Q Consensus 1092 e~~ 1094 (1112)
+.-
T Consensus 86 e~~ 88 (104)
T 1we8_A 86 EDE 88 (104)
T ss_dssp HHH
T ss_pred hCh
Confidence 654
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=90.00 E-value=1.2 Score=48.48 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=16.0
Q ss_pred cCCCEEEEcCCCChHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~ 521 (1112)
....+++.|++|+|||..+
T Consensus 49 ~~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3578999999999999753
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=90.00 E-value=1.1 Score=46.54 Aligned_cols=21 Identities=24% Similarity=0.202 Sum_probs=16.3
Q ss_pred cCCCEEEEcCCCChHHHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~ll 523 (1112)
.|.-++++|++|+|||+.+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~ 42 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLH 42 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHH
Confidence 456788899999999975443
|
| >2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 | Back alignment and structure |
|---|
Probab=89.94 E-value=1.1 Score=39.94 Aligned_cols=74 Identities=9% Similarity=0.122 Sum_probs=56.0
Q ss_pred CeEEEEEecCCCccchhhccc-chhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q 001261 1012 HYEAELEINDFPQNARWKVTH-KETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVL 1090 (1112)
Q Consensus 1012 ~~~~~~~INd~pq~~R~~~t~-~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~ 1090 (1112)
.|...|.|..- .++-.+=+ +.++..|++.|||.|.+- +...|. ...-.+.|.|+ ...|..|+..|..|+
T Consensus 16 ~~~~~i~Ip~~--~ig~IIGkgG~~Ik~I~~etg~~I~i~-----~~g~~~--~~~~~V~I~G~-~e~v~~A~~~I~~iv 85 (97)
T 2ctl_A 16 SFKLSVTVDPK--YHPKIIGRKGAVITQIRLEHDVNIQFP-----DKDDGN--QPQDQITITGY-EKNTEAARDAILRIV 85 (97)
T ss_dssp TCEEEEECCTT--THHHHSCSSSCHHHHHHHHHTCEEECC-----CTTTCS--SCSSEEEEESC-HHHHHHHHHHHHHHH
T ss_pred ceeEEEEECHH--HhhhcCCCCchhHHHHHHHHCCEEEec-----CCCCCC--CCccEEEEEeC-HHHHHHHHHHHHHHH
Confidence 47888888754 77777765 899999999999999873 222222 23345778898 889999999999999
Q ss_pred HHHHH
Q 001261 1091 EDFTN 1095 (1112)
Q Consensus 1091 ~e~~~ 1095 (1112)
.+.-.
T Consensus 86 ~e~e~ 90 (97)
T 2ctl_A 86 GELEQ 90 (97)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87643
|
| >2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 | Back alignment and structure |
|---|
Probab=89.89 E-value=0.53 Score=41.97 Aligned_cols=70 Identities=26% Similarity=0.309 Sum_probs=54.1
Q ss_pred cCeEEEEEecCCCccchhhcccc-hhhhhHHhhh-CCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHH
Q 001261 1011 EHYEAELEINDFPQNARWKVTHK-ETLGPISEWT-GAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKR 1088 (1112)
Q Consensus 1011 ~~~~~~~~INd~pq~~R~~~t~~-~~~~~i~~~t-g~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~ 1088 (1112)
+.....|.|+- ...|..+-.+ .++.+|++.| ||.|.+ |. .|...-.+.|.|+++ .|++|+.+|+.
T Consensus 15 ~~vt~~i~Ip~--~~i~~iIG~gGk~Ir~I~eetggv~I~i-----~~-----~g~~~~~V~I~G~~~-~v~~A~~~I~~ 81 (95)
T 2ctj_A 15 NIAEVEVSIPA--KLHNSLIGTKGRLIRSIMEECGGVHIHF-----PV-----EGSGSDTVVIRGPSS-DVEKAKKQLLH 81 (95)
T ss_dssp SSCCEEEECCH--HHHHHHHCSSSHHHHHHHHHHTSCEEEC-----CC-----TTTTCCEEEEESCHH-HHHHHHHHHHH
T ss_pred hcEEEEEEECH--HHHhhhCCCCchhHHHHHHHcCCCEEEe-----CC-----CCCCcceEEEEcCHH-HHHHHHHHHHH
Confidence 34566777764 3777777655 9999999999 999965 32 234445789999988 99999999999
Q ss_pred HHHHH
Q 001261 1089 VLEDF 1093 (1112)
Q Consensus 1089 ~~~e~ 1093 (1112)
|+.+.
T Consensus 82 iv~e~ 86 (95)
T 2ctj_A 82 LAEEK 86 (95)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 98774
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=89.85 E-value=0.55 Score=61.02 Aligned_cols=78 Identities=13% Similarity=0.201 Sum_probs=65.4
Q ss_pred cCCeEEEEeCCHHHHHHHHHHHHh---cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc-----ccccCCCCCcc
Q 001261 713 EKGKILIFVHSQEKCDALFRDLLK---HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-----AARGLDVKELE 784 (1112)
Q Consensus 713 ~~~~vLIF~~s~~~~~~l~~~L~~---~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v-----~~~GlDi~~v~ 784 (1112)
.+.++||.+|++.-|.+++..|.. .++.+..+||+++..++...+..+..|..+|||+|.- +.. +++.++.
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l~ 198 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFD 198 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHTSCCS
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcccCcC
Confidence 456899999999999999999998 4679999999999988888999999999999999942 222 5667899
Q ss_pred EEEEeCC
Q 001261 785 LVINFDA 791 (1112)
Q Consensus 785 ~VI~~d~ 791 (1112)
+||.-.+
T Consensus 199 ~lViDEa 205 (1104)
T 4ddu_A 199 FVFVDDV 205 (1104)
T ss_dssp EEEESCH
T ss_pred EEEEeCC
Confidence 9986433
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=89.81 E-value=0.6 Score=54.33 Aligned_cols=17 Identities=29% Similarity=0.253 Sum_probs=14.4
Q ss_pred CCEEEEcCCCChHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~ 521 (1112)
..+|+.||+|+|||+.+
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 35899999999999753
|
| >1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1 | Back alignment and structure |
|---|
Probab=89.45 E-value=0.37 Score=41.69 Aligned_cols=71 Identities=18% Similarity=0.171 Sum_probs=50.4
Q ss_pred CeEEEEEecCCCccchhhcc-cchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q 001261 1012 HYEAELEINDFPQNARWKVT-HKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVL 1090 (1112)
Q Consensus 1012 ~~~~~~~INd~pq~~R~~~t-~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~ 1090 (1112)
.+..+|.|..- .+...+= .+.++.+|++.|||.|.+-.. .++...=.+.|.|.. .+|+.|+..|..+|
T Consensus 5 ~~~~~i~Ip~~--~vg~IIGkgG~~Ik~I~~~sga~I~i~~~--------~~~~~~r~v~I~G~~-~~v~~A~~~I~~~i 73 (82)
T 1wvn_A 5 QTTHELTIPNN--LIGCIIGRQGANINEIRQMSGAQIKIANP--------VEGSSGRQVTITGSA-ASISLAQYLINARL 73 (82)
T ss_dssp CEEEEEEEEGG--GHHHHHCGGGHHHHHHHHHHCCEEEECCC--------CTTCSEEEEEEEECH-HHHHHHHHHHHHHT
T ss_pred cEEEEEEEchH--hccceeCCCchhHHHHHHHhCCEEEEecC--------CCCCCceEEEEEcCH-HHHHHHHHHHHHHH
Confidence 45667777543 4555554 468999999999999998642 123333457778965 89999999999998
Q ss_pred HHH
Q 001261 1091 EDF 1093 (1112)
Q Consensus 1091 ~e~ 1093 (1112)
.+.
T Consensus 74 ~~~ 76 (82)
T 1wvn_A 74 SSE 76 (82)
T ss_dssp C--
T ss_pred Hhh
Confidence 876
|
| >1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A | Back alignment and structure |
|---|
Probab=89.31 E-value=0.73 Score=38.60 Aligned_cols=66 Identities=23% Similarity=0.280 Sum_probs=49.9
Q ss_pred CeEEEEEecCCCccchhhc-ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q 001261 1012 HYEAELEINDFPQNARWKV-THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVL 1090 (1112)
Q Consensus 1012 ~~~~~~~INd~pq~~R~~~-t~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~ 1090 (1112)
.....|.|+.- .++..+ ..+.++.+|++.|||.|.+- + .|++.=.+.|.|+. ..|+.|+.+|..|+
T Consensus 4 ~~~~~i~I~~~--~ig~iIG~gG~~I~~I~e~tg~~I~i~-----~-----~g~~~~~V~I~G~~-~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 4 MDYVEINIDHK--FHRHLIGKSGANINRIKDQYKVSVRIP-----P-----DSEKSNLIRIEGDP-QGVQQAKRELLELA 70 (71)
T ss_dssp CEEEEEEECSS--HHHHHTCSSCCHHHHHHHHTCCEEECC-----C-----CCSSSEEEEEEESS-HHHHHHHHHHHHTC
T ss_pred eEEEEEEECHH--HhhhhcCCCCccHHHHHHHHCCEEEEC-----C-----CCCcccEEEEEcCH-HHHHHHHHHHHHHh
Confidence 34567777754 788888 66889999999999999762 2 12233367888995 78999999998864
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=89.28 E-value=1 Score=58.88 Aligned_cols=91 Identities=9% Similarity=0.138 Sum_probs=71.0
Q ss_pred chhHHHHH-HHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC
Q 001261 698 SDRFLRLL-ELLGEWYEKGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS 772 (1112)
Q Consensus 698 ~~k~~~ll-~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~ 772 (1112)
..|....+ ..+.....+.++||.|++..-+.+.+..|... ++.+..++|..+..++..++..+..|..+|+|+|.
T Consensus 635 sGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~ 714 (1151)
T 2eyq_A 635 FGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTH 714 (1151)
T ss_dssp TTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECT
T ss_pred CCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 45554333 23333334569999999999999888888753 67899999999999999999999999999999995
Q ss_pred -cccccCCCCCccEEEE
Q 001261 773 -VAARGLDVKELELVIN 788 (1112)
Q Consensus 773 -v~~~GlDi~~v~~VI~ 788 (1112)
.+...+.+.++.+||.
T Consensus 715 ~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 715 KLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp HHHHSCCCCSSEEEEEE
T ss_pred HHHhCCccccccceEEE
Confidence 4455688888888885
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=89.24 E-value=1.3 Score=49.92 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=16.2
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHH
Q 001261 506 DCIGVAKTGSGKTLAFVLPMLRHI 529 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l 529 (1112)
.+++.|+.|+|||..+. .+...+
T Consensus 40 ~~ll~G~~G~GKT~la~-~la~~l 62 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIAR-LLAKGL 62 (373)
T ss_dssp EEEEESCTTSSHHHHHH-HHHHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHHHh
Confidence 37899999999997543 334443
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=89.18 E-value=1.1 Score=50.53 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=17.7
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHI 529 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l 529 (1112)
++.+|+.||+|+|||..+- .+...+
T Consensus 70 ~~~vLl~GppGtGKT~la~-~la~~l 94 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAM-GMAQAL 94 (368)
T ss_dssp TCEEEEEESTTSSHHHHHH-HHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH-HHHHHh
Confidence 3579999999999997533 334343
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=89.07 E-value=0.58 Score=52.73 Aligned_cols=19 Identities=16% Similarity=0.163 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
.+.+|+.||+|+|||+.+-
T Consensus 84 ~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCCEEEECSTTSCHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3579999999999997543
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=89.01 E-value=2.3 Score=47.16 Aligned_cols=53 Identities=15% Similarity=0.190 Sum_probs=32.2
Q ss_pred ceEEEeccchhhh-ccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhc
Q 001261 618 VTYLVMDEADRMF-DMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVL 670 (1112)
Q Consensus 618 i~~vViDEah~~~-~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~ 670 (1112)
+.+++||-+-++- +..+...+..+...+.++..++++.+|....+...+..+.
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~ 265 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFN 265 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHH
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHH
Confidence 4567788776532 1223445555656666777778888887666555555443
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=88.87 E-value=1.5 Score=45.90 Aligned_cols=50 Identities=20% Similarity=0.221 Sum_probs=28.9
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIR 561 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~ 561 (1112)
.|.-++++|++|+|||+.++..+...+. .+..++++.- .....++...+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~--------~~~~v~~~~~-e~~~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK--------MGEPGIYVAL-EEHPVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH--------TTCCEEEEES-SSCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh--------cCCeEEEEEc-cCCHHHHHHHHH
Confidence 4567888999999999754444333322 1335666653 233344444443
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.71 E-value=0.29 Score=56.53 Aligned_cols=55 Identities=22% Similarity=0.279 Sum_probs=30.4
Q ss_pred CcccccccCCCCHHHHHHHHH---CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHH
Q 001261 464 KPIKTWHQTGLTSKIMETIRK---LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 464 ~pi~~~~~~~L~~~l~~~l~~---~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~ 521 (1112)
.|-.+|.+.+--....+.|.. +.+..|--++... +.-.+.+|+.||+|+|||+.+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHHH
Confidence 345678888755555555442 1111111111111 012367999999999999753
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.63 E-value=1.1 Score=51.45 Aligned_cols=55 Identities=22% Similarity=0.245 Sum_probs=30.1
Q ss_pred CcccccccCCCCHHHHHHHHH---CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHH
Q 001261 464 KPIKTWHQTGLTSKIMETIRK---LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 464 ~pi~~~~~~~L~~~l~~~l~~---~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~ 521 (1112)
.|-.+|.+.|--..+.+.|.. +.+..|--++...+ ...+.+|+.||+|+|||+.+
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~---~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI---DPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTTTHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCceEEEECCCCCCHHHHH
Confidence 345688887755555555442 11111111111111 12367999999999999753
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=88.30 E-value=1.6 Score=44.91 Aligned_cols=72 Identities=17% Similarity=0.251 Sum_probs=55.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhc-----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc-----c-cccCCCCCc
Q 001261 715 GKILIFVHSQEKCDALFRDLLKH-----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-----A-ARGLDVKEL 783 (1112)
Q Consensus 715 ~~vLIF~~s~~~~~~l~~~L~~~-----g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v-----~-~~GlDi~~v 783 (1112)
.++||.|+++.-+..++..+... ++.+..++|+.+...... .+..+...|+|+|.- + ...+++..+
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 38999999999999998888765 788999999998765543 344567799999942 1 234677888
Q ss_pred cEEEEe
Q 001261 784 ELVINF 789 (1112)
Q Consensus 784 ~~VI~~ 789 (1112)
.+||.-
T Consensus 160 ~~lViD 165 (220)
T 1t6n_A 160 KHFILD 165 (220)
T ss_dssp CEEEEE
T ss_pred CEEEEc
Confidence 888863
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.08 E-value=1.8 Score=45.86 Aligned_cols=18 Identities=28% Similarity=0.397 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCChHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~ 521 (1112)
.+.+|+.|++|+|||..+
T Consensus 39 ~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456899999999999753
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=88.08 E-value=1 Score=52.48 Aligned_cols=38 Identities=16% Similarity=-0.010 Sum_probs=23.4
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~ 547 (1112)
.|.-+++.|++|+|||+.++..+...... .|..|+|+.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~-------~g~~Vl~~s 239 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK-------TNENVAIFS 239 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH-------SSCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh-------CCCcEEEEE
Confidence 34567888999999996544444333222 144567765
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=88.01 E-value=3.1 Score=45.55 Aligned_cols=19 Identities=26% Similarity=0.155 Sum_probs=14.5
Q ss_pred CCEEEEcCCCChHHHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~ll 523 (1112)
.-++++|++|+|||+....
T Consensus 105 ~vi~ivG~~GsGKTTl~~~ 123 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGK 123 (306)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHH
Confidence 4467889999999975443
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=87.79 E-value=3.1 Score=47.45 Aligned_cols=19 Identities=16% Similarity=0.017 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
|.-++|+|+.|+|||+.+.
T Consensus 178 Gei~~I~G~sGsGKTTLl~ 196 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCH 196 (400)
T ss_dssp TSEEEEEESTTSSHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHH
Confidence 4568889999999997544
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=87.54 E-value=1 Score=54.44 Aligned_cols=76 Identities=11% Similarity=0.149 Sum_probs=63.0
Q ss_pred cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHh--hcCCccEEEecCc-c----------cccCC
Q 001261 713 EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDF--KSNVCNLLIATSV-A----------ARGLD 779 (1112)
Q Consensus 713 ~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F--~~g~~~VLVaT~v-~----------~~GlD 779 (1112)
..+.+||++|++.-+......|...|+.+..++|+++..++..++..+ ..+..+|||+|+- + ...++
T Consensus 83 ~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~ 162 (591)
T 2v1x_A 83 SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYE 162 (591)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHH
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhh
Confidence 367999999999999999999999999999999999999999888888 5788999999962 1 12234
Q ss_pred CCCccEEEE
Q 001261 780 VKELELVIN 788 (1112)
Q Consensus 780 i~~v~~VI~ 788 (1112)
...+.+||.
T Consensus 163 ~~~i~~iVi 171 (591)
T 2v1x_A 163 ARRFTRIAV 171 (591)
T ss_dssp TTCEEEEEE
T ss_pred ccCCcEEEE
Confidence 556777775
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=87.48 E-value=0.97 Score=50.39 Aligned_cols=39 Identities=18% Similarity=0.242 Sum_probs=23.6
Q ss_pred CCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEe
Q 001261 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~S 655 (1112)
....+|||||+|.|... ....+..++........+|+++
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEe
Confidence 35679999999987532 2334555555555544455544
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=87.16 E-value=0.77 Score=53.44 Aligned_cols=37 Identities=22% Similarity=0.134 Sum_probs=22.7
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~ 547 (1112)
|.-+++.|++|+|||..++ -++.++... .+..|+++.
T Consensus 200 G~l~ii~G~pg~GKT~lal-~ia~~~a~~------~g~~vl~~s 236 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFAL-TIAQNAALK------EGVGVGIYS 236 (444)
T ss_dssp TCEEEEEECTTSCHHHHHH-HHHHHHHHT------TCCCEEEEE
T ss_pred CcEEEEEeCCCCCHHHHHH-HHHHHHHHh------CCCeEEEEE
Confidence 4457788999999996444 444443321 144567765
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=87.13 E-value=1.5 Score=45.00 Aligned_cols=23 Identities=22% Similarity=-0.009 Sum_probs=17.0
Q ss_pred cCCCEEEEcCCCChHHHHHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPM 525 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~ 525 (1112)
.|.-++++|++|+|||+.+...+
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~ 41 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTG 41 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 35568889999999997544433
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.11 E-value=0.58 Score=52.78 Aligned_cols=19 Identities=26% Similarity=0.270 Sum_probs=15.7
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
.+.+|+.|++|+|||+.+-
T Consensus 117 ~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CSEEEEESSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999997543
|
| >2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 | Back alignment and structure |
|---|
Probab=86.96 E-value=1.3 Score=39.44 Aligned_cols=73 Identities=8% Similarity=0.100 Sum_probs=54.0
Q ss_pred CeEEEEEecCCCccchhhc-ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q 001261 1012 HYEAELEINDFPQNARWKV-THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVL 1090 (1112)
Q Consensus 1012 ~~~~~~~INd~pq~~R~~~-t~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~ 1090 (1112)
.+...|.|+.- ..+..+ ..+.++..|++.|||.|.+- ++|. ...=.+.|.|+ .+.|+.|+..|..|+
T Consensus 16 ~vt~~i~Ip~~--~ig~IIG~gG~~Ir~I~e~tg~~I~i~----~~g~-----~~~~~V~I~G~-~e~v~~A~~~I~~i~ 83 (95)
T 2ctm_A 16 MVSEDVPLDHR--VHARIIGARGKAIRKIMDEFKVDIRFP----QSGA-----PDPNCVTVTGL-PENVEEAIDHILNLE 83 (95)
T ss_dssp CCCEEEECCTT--THHHHHCSSSCHHHHHHHHHTCEEECC----CTTC-----SCTTEEEEESC-HHHHHHHHHHHHHHH
T ss_pred cEEEEEEECHH--HccccCCCCcchHHHHHHHHCCeEEec----CCCC-----CCCcEEEEEcC-HHHHHHHHHHHHHHH
Confidence 46677888754 666665 56789999999999999981 1111 12335778898 589999999999999
Q ss_pred HHHHHH
Q 001261 1091 EDFTNQ 1096 (1112)
Q Consensus 1091 ~e~~~~ 1096 (1112)
.+....
T Consensus 84 ~e~~~~ 89 (95)
T 2ctm_A 84 EEYLAD 89 (95)
T ss_dssp HHHHTS
T ss_pred HHHHHH
Confidence 887653
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=86.60 E-value=2.8 Score=49.76 Aligned_cols=76 Identities=11% Similarity=0.090 Sum_probs=63.8
Q ss_pred cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc-c-----cccCCCCCccEE
Q 001261 713 EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-A-----ARGLDVKELELV 786 (1112)
Q Consensus 713 ~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v-~-----~~GlDi~~v~~V 786 (1112)
..+.+||++|++.-+......|...|+.+..+||+.+..++..++..+..|..+|||+|.- + ...+...++.+|
T Consensus 64 ~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~v 143 (523)
T 1oyw_A 64 LNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLL 143 (523)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEE
T ss_pred hCCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEE
Confidence 3589999999999999999999999999999999999999999999999999999999942 1 122444567777
Q ss_pred EE
Q 001261 787 IN 788 (1112)
Q Consensus 787 I~ 788 (1112)
|.
T Consensus 144 Vi 145 (523)
T 1oyw_A 144 AV 145 (523)
T ss_dssp EE
T ss_pred EE
Confidence 75
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=86.59 E-value=1.1 Score=52.13 Aligned_cols=19 Identities=26% Similarity=0.144 Sum_probs=14.5
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
|.-++++|++|||||+.+.
T Consensus 293 GeVI~LVGpNGSGKTTLl~ 311 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIG 311 (503)
T ss_dssp TEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCcccHHHHHH
Confidence 3457788999999997543
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=86.55 E-value=1.7 Score=47.73 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=23.2
Q ss_pred CCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEe
Q 001261 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~S 655 (1112)
....+|||||+|.|... ....+..++...+....+|+++
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 35679999999987532 2334455555544444444443
|
| >2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 | Back alignment and structure |
|---|
Probab=86.50 E-value=1.1 Score=40.51 Aligned_cols=69 Identities=17% Similarity=0.196 Sum_probs=52.3
Q ss_pred eEEEEEecCCCccchhhccc-chhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHH
Q 001261 1013 YEAELEINDFPQNARWKVTH-KETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLE 1091 (1112)
Q Consensus 1013 ~~~~~~INd~pq~~R~~~t~-~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~~ 1091 (1112)
+...|.|+.- .++..+=+ +.++.+|++.|||.|.+-- +|. ..=.+.|.|+. ..|+.|+..|..++.
T Consensus 17 ~~~~i~Ip~~--~ig~IIG~gG~~Ir~I~eetg~~I~I~~----~g~------~~~~V~I~G~~-e~v~~A~~~I~~i~~ 83 (104)
T 2ctk_A 17 VTIEVEVPFD--LHRYVIGQKGSGIRKMMDEFEVNIHVPA----PEL------QSDIIAITGLA-ANLDRAKAGLLERVK 83 (104)
T ss_dssp EEEEEECCHH--HHHHHHCSSSHHHHHHHHHTCCEEECCC----TTT------TCCEEEEEECH-HHHHHHHHHHHHHHH
T ss_pred EEEEEEEChH--HccceeCCCchHHHHHHHHHCCEEEecC----CCC------CcceEEEEcCH-HHHHHHHHHHHHHHh
Confidence 5667777643 67777655 8999999999999998721 222 11278888986 889999999999998
Q ss_pred HHH
Q 001261 1092 DFT 1094 (1112)
Q Consensus 1092 e~~ 1094 (1112)
+.-
T Consensus 84 e~e 86 (104)
T 2ctk_A 84 ELQ 86 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 765
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.43 E-value=0.72 Score=53.27 Aligned_cols=55 Identities=24% Similarity=0.312 Sum_probs=32.7
Q ss_pred CcccccccCCCCHHHHHHHHHCC---CCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHH
Q 001261 464 KPIKTWHQTGLTSKIMETIRKLN---YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 464 ~pi~~~~~~~L~~~l~~~l~~~~---~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~ 521 (1112)
.|-.+|.+.+--..+.+.|...= +..|--++... +.-.+.+|+.||+|+|||+.+
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHHH
Confidence 45578999887777776665421 11111111111 113467999999999999743
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=86.40 E-value=2.6 Score=45.41 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=19.3
Q ss_pred HHcCCCEEEEcCCCChHHHHHHHHHH
Q 001261 501 IMSGRDCIGVAKTGSGKTLAFVLPML 526 (1112)
Q Consensus 501 il~g~dvii~a~TGsGKT~~~llp~l 526 (1112)
+..|.-++++|++|+|||+.++..+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 34677789999999999975544433
|
| >2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.33 E-value=1.1 Score=43.99 Aligned_cols=71 Identities=20% Similarity=0.227 Sum_probs=53.1
Q ss_pred CeEEEEEecCCCccchhhcc-cchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q 001261 1012 HYEAELEINDFPQNARWKVT-HKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVL 1090 (1112)
Q Consensus 1012 ~~~~~~~INd~pq~~R~~~t-~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~ 1090 (1112)
.+...|.|.. ..+.+.+= .+.++.+|++.|||.|.+-+..+| ..++ =.+.|.| +..+|..|+..|..+|
T Consensus 88 ~~~~~i~vp~--~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~~-----~~~~--~~v~I~G-~~~~v~~A~~~I~~~i 157 (160)
T 2jzx_A 88 PVTLRLVVPA--SQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLP-----NSTE--RAITIAG-IPQSIIECVKQICVVM 157 (160)
T ss_dssp SEEEEEEEEH--HHHHHHHCGGGHHHHHHHHHHSSEECCCCCCST-----TCCE--EEEEEEE-CHHHHHHHHHHHHHHH
T ss_pred CEEEEEEECh--hheeeEECCCCHHHHHHHHHhCCeEEECCCCCC-----CCCc--eEEEEEc-CHHHHHHHHHHHHHHH
Confidence 3566777753 35666654 578999999999999999764332 2233 3567889 8999999999999998
Q ss_pred HH
Q 001261 1091 ED 1092 (1112)
Q Consensus 1091 ~e 1092 (1112)
.|
T Consensus 158 ~e 159 (160)
T 2jzx_A 158 LE 159 (160)
T ss_dssp HH
T ss_pred hc
Confidence 76
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.32 E-value=0.8 Score=52.36 Aligned_cols=55 Identities=20% Similarity=0.337 Sum_probs=30.7
Q ss_pred CcccccccCCCCHHHHHHHHH---CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHH
Q 001261 464 KPIKTWHQTGLTSKIMETIRK---LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 464 ~pi~~~~~~~L~~~l~~~l~~---~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~ 521 (1112)
.|-.+|.+.|=-..+.+.|.. +.+..|--++...+ --.+.+|+.||.|+|||+.+
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHHH
Confidence 345678887655555554442 11122222222111 12367999999999999743
|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* | Back alignment and structure |
|---|
Probab=86.29 E-value=2.7 Score=46.06 Aligned_cols=18 Identities=22% Similarity=0.102 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCChHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~ 521 (1112)
...++++|++|+|||..+
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 368999999999999753
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=86.15 E-value=4.4 Score=46.53 Aligned_cols=21 Identities=29% Similarity=0.105 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCChHHHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLP 524 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp 524 (1112)
+.-++++|++|+|||+.....
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~L 118 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKL 118 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 345677799999999754433
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A | Back alignment and structure |
|---|
Probab=86.12 E-value=1.2 Score=51.89 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCChHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~ 521 (1112)
.+.+|+.||+|+|||+.+
T Consensus 167 ~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 367999999999999753
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=85.77 E-value=1.3 Score=56.18 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCChHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~l 522 (1112)
..+++++|++|+|||..+-
T Consensus 191 ~~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CCCCEEEECTTSCHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHH
Confidence 3579999999999997533
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=85.56 E-value=1.8 Score=50.91 Aligned_cols=42 Identities=14% Similarity=0.280 Sum_probs=25.8
Q ss_pred ceEEEeccchhhhccC----------ChhHHHHHHHhcCCCCcEEEEecccc
Q 001261 618 VTYLVMDEADRMFDMG----------FEPQITRIVQNIRPDRQTVLFSATFP 659 (1112)
Q Consensus 618 i~~vViDEah~~~~~g----------f~~~i~~il~~~~~~~q~il~SAT~~ 659 (1112)
.++|+|||+|.|.... ....+..++..+.....++++.||-.
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~ 349 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNR 349 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESC
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCC
Confidence 4689999999886421 11234444555555556777777744
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.42 E-value=4.8 Score=40.62 Aligned_cols=71 Identities=20% Similarity=0.353 Sum_probs=50.8
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH---HHHhc-CCeEEEeCchHHHHHHHhcCCccccc
Q 001261 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l 615 (1112)
++++||.|+++..+..++..+.. .++.+..++|+.+..+.. ..+.. ...|+|+|. .+..+ .++
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~----~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~~G----ldi 120 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLL----KGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VASKG----LDF 120 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHH----HTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HHHTT----CCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----chhcC----CCc
Confidence 45799999999999887776655 478899999998766543 33333 478999993 23222 577
Q ss_pred CCceEEEe
Q 001261 616 RRVTYLVM 623 (1112)
Q Consensus 616 ~~i~~vVi 623 (1112)
..+.+||.
T Consensus 121 ~~v~~VI~ 128 (191)
T 2p6n_A 121 PAIQHVIN 128 (191)
T ss_dssp CCCSEEEE
T ss_pred ccCCEEEE
Confidence 77887776
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=85.27 E-value=1.5 Score=48.05 Aligned_cols=38 Identities=16% Similarity=0.245 Sum_probs=22.7
Q ss_pred CceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEe
Q 001261 617 RVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~S 655 (1112)
...+|||||+|.|.... ...+..++...+....+|++|
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEe
Confidence 36799999999875422 233445555544455555544
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.23 E-value=3.6 Score=43.49 Aligned_cols=71 Identities=14% Similarity=0.252 Sum_probs=53.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-----ccc--ccCCCCC
Q 001261 714 KGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAA--RGLDVKE 782 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-----v~~--~GlDi~~ 782 (1112)
..++||.|+++.-+..++..+... ++.+..++|+.+.......+ .+...|+|+|. .+. .++++..
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 347999999999999888877664 88999999999876554433 24678999993 122 3567788
Q ss_pred ccEEEE
Q 001261 783 LELVIN 788 (1112)
Q Consensus 783 v~~VI~ 788 (1112)
+.+||.
T Consensus 187 ~~~lVi 192 (249)
T 3ber_A 187 LKYLVM 192 (249)
T ss_dssp CCEEEE
T ss_pred cCEEEE
Confidence 888875
|
| >2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=85.20 E-value=3.1 Score=45.60 Aligned_cols=17 Identities=6% Similarity=-0.261 Sum_probs=14.1
Q ss_pred CEEEEcCCCChHHHHHH
Q 001261 506 DCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~l 522 (1112)
..|+.||.|+|||..+.
T Consensus 20 ~~Lf~Gp~G~GKtt~a~ 36 (305)
T 2gno_A 20 SILINGEDLSYPREVSL 36 (305)
T ss_dssp EEEEECSSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58889999999997544
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=85.18 E-value=2.3 Score=47.25 Aligned_cols=38 Identities=16% Similarity=0.408 Sum_probs=23.2
Q ss_pred CCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEE
Q 001261 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLF 654 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~ 654 (1112)
....++||||+|.|... ....+..++...+....+|++
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~ 146 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVL 146 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEE
Confidence 34789999999987532 233455555555554444443
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=84.87 E-value=0.62 Score=50.90 Aligned_cols=16 Identities=19% Similarity=0.009 Sum_probs=13.5
Q ss_pred CCEEEEcCCCChHHHH
Q 001261 505 RDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~ 520 (1112)
+.+|+.||+|+|||..
T Consensus 37 ~~lLl~GppGtGKT~l 52 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQ 52 (293)
T ss_dssp SEEEEEECTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3578889999999974
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=84.63 E-value=1.2 Score=46.77 Aligned_cols=51 Identities=18% Similarity=0.298 Sum_probs=28.7
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIR 561 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~ 561 (1112)
.|.-+++.|++|+|||..++-.+++.+.. .+..++|+.-. +-..++...+.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~-------~~~~v~~~s~E-~~~~~~~~~~~ 79 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEE-------YGEPGVFVTLE-ERARDLRREMA 79 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHH-------HCCCEEEEESS-SCHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh-------cCCCceeeccc-CCHHHHHHHHH
Confidence 35668889999999996544444443332 13346666532 22344444443
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=84.43 E-value=1.4 Score=45.97 Aligned_cols=24 Identities=17% Similarity=0.032 Sum_probs=17.8
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPML 526 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l 526 (1112)
.|.-++++|++|+|||+.+...+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 456788899999999975544333
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=84.31 E-value=5.3 Score=46.90 Aligned_cols=57 Identities=16% Similarity=0.017 Sum_probs=30.9
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEcc--chhHHHHHHHHHHHHhhhcCceEEE
Q 001261 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP--TRELVQQIHSDIRKFAKVMGVRCVP 573 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~P--treLa~Q~~~~~~~~~~~~~i~~~~ 573 (1112)
.++++|.+|+|||+.+...+. ++.. .|.+++++.. .+..+..+. ..+....++.+..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~-~l~~-------~G~kVllVd~D~~r~aa~~qL---~~~~~~~~i~v~~ 161 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAY-YYQR-------KGWKTCLICADTFRAGAFDQL---KQNATKARIPFYG 161 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHH-HHHH-------TTCCEEEEEECCSSSHHHHHH---HHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHh-------CCCeEEEEeccccchhHHHHH---HHHhhccCceEEc
Confidence 477789999999986544333 3322 2455666663 344444332 2233334555444
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=84.25 E-value=0.66 Score=53.65 Aligned_cols=22 Identities=27% Similarity=0.114 Sum_probs=16.4
Q ss_pred CCEEEEcCCCChHHHHHHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFVLPML 526 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l 526 (1112)
..++++|++|+|||+.+...+.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3688899999999976544333
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=84.17 E-value=1.7 Score=47.26 Aligned_cols=21 Identities=19% Similarity=0.216 Sum_probs=16.6
Q ss_pred cCCCEEEEcCCCChHHHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~ll 523 (1112)
.|.-++++|++|+|||+.+..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ 54 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQ 54 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHH
Confidence 566788899999999975443
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=84.11 E-value=1.4 Score=59.71 Aligned_cols=45 Identities=18% Similarity=0.199 Sum_probs=32.2
Q ss_pred HHHHHc------CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccch
Q 001261 498 LPVIMS------GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTR 550 (1112)
Q Consensus 498 i~~il~------g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptr 550 (1112)
+..++. ++.++++||+|+|||..++..+..... .|..|+|+..--
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~--------~G~~v~Fi~~e~ 1465 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR--------EGKTCAFIDAEH 1465 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT--------TTCCEEEECTTS
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH--------cCCcEEEEEccc
Confidence 556665 678999999999999876665554432 366788877543
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=84.09 E-value=0.77 Score=51.15 Aligned_cols=37 Identities=22% Similarity=0.174 Sum_probs=23.5
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~ 547 (1112)
.|.-+|+.|++|+|||..++ -++.++.. .+..|+|++
T Consensus 45 ~G~LiiIaG~pG~GKTt~al-~ia~~~a~-------~g~~Vl~fS 81 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMM-NMVLSALN-------DDRGVAVFS 81 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHH-HHHHHHHH-------TTCEEEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHH-HHHHHHHH-------cCCeEEEEe
Confidence 34557778999999996444 44444332 245677776
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=83.99 E-value=2.5 Score=50.06 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=25.0
Q ss_pred CCceEEEeccchhhhccC--ChhHHHHHHHhcCCCCcEEEEeccc
Q 001261 616 RRVTYLVMDEADRMFDMG--FEPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~g--f~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
....+|||||+|.|.... +...+..++.. ....+|+++++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCC
Confidence 345799999999886432 22344444443 334577777764
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=83.54 E-value=6.2 Score=47.70 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=19.5
Q ss_pred HHHHHcCCCEEEEcCCCChHHHHH
Q 001261 498 LPVIMSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 498 i~~il~g~dvii~a~TGsGKT~~~ 521 (1112)
...+..|..++++||+|+|||+.+
T Consensus 54 ~~~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 54 KTAANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHHHTTCCEEEECCTTSSHHHHH
T ss_pred cccccCCCEEEEEeCCCCCHHHHH
Confidence 344567899999999999999743
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=83.49 E-value=7 Score=40.80 Aligned_cols=71 Identities=8% Similarity=0.093 Sum_probs=53.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHh----cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-----ccc-ccCCCCCc
Q 001261 714 KGKILIFVHSQEKCDALFRDLLK----HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAA-RGLDVKEL 783 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~----~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-----v~~-~GlDi~~v 783 (1112)
...+||.|+++.-+..++..+.. .++.+..++|+.+.......+.. ..+|||+|. .+. ..+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 45799999999999888777765 38899999999998766554432 478999994 222 34577888
Q ss_pred cEEEE
Q 001261 784 ELVIN 788 (1112)
Q Consensus 784 ~~VI~ 788 (1112)
.+||.
T Consensus 178 ~~lVi 182 (242)
T 3fe2_A 178 TYLVL 182 (242)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 88885
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.38 E-value=5 Score=41.67 Aligned_cols=70 Identities=21% Similarity=0.287 Sum_probs=49.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc-----ccc--cCCCCC
Q 001261 714 KGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-----AAR--GLDVKE 782 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v-----~~~--GlDi~~ 782 (1112)
..++||.|+++.-+..++..+... ++.+..++|+.+.......+ +..+|+|+|.- +.. .+++.+
T Consensus 97 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~~ 171 (236)
T 2pl3_A 97 GLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHATD 171 (236)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCccccc
Confidence 458999999999999999888775 47899999998765544333 45789999941 112 356677
Q ss_pred ccEEEE
Q 001261 783 LELVIN 788 (1112)
Q Consensus 783 v~~VI~ 788 (1112)
+.+||.
T Consensus 172 ~~~lVi 177 (236)
T 2pl3_A 172 LQMLVL 177 (236)
T ss_dssp CCEEEE
T ss_pred ccEEEE
Confidence 777774
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=83.25 E-value=4.5 Score=46.62 Aligned_cols=57 Identities=16% Similarity=0.130 Sum_probs=31.0
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc--cchhHHHHHHHHHHHHhhhcCceEE
Q 001261 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCV 572 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~--PtreLa~Q~~~~~~~~~~~~~i~~~ 572 (1112)
.++++|++|+|||+...-.+... ... .|.+++++. |.+..+... +..+....++.+.
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l-~~~------~G~kVllvd~D~~r~~a~~q---l~~~~~~~~l~v~ 160 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFL-REK------HKKKVLVVSADVYRPAAIKQ---LETLAEQVGVDFF 160 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-HHT------SCCCEEEEECCCSSTTHHHH---HHHHHHHHTCEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-HHh------cCCeEEEEecCCCCccHHHH---HHhhcccCCeeEE
Confidence 46677999999998655444332 221 145666665 555544432 2233334455543
|
| >3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.17 E-value=2 Score=42.27 Aligned_cols=75 Identities=12% Similarity=0.199 Sum_probs=54.6
Q ss_pred cCeEEEEEecCCCccchhhcc-cchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHH
Q 001261 1011 EHYEAELEINDFPQNARWKVT-HKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRV 1089 (1112)
Q Consensus 1011 ~~~~~~~~INd~pq~~R~~~t-~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~ 1089 (1112)
..+.+.|.|.. ..+.+.+- .+.++.+|++.|||.|.+-+. ..|.. ...-.+.|.| +...|+.|+..|..+
T Consensus 83 ~~~~~~i~vp~--~~~g~iIGkgG~~I~~i~~~tga~I~i~~~-----~~~~~-~~~~~v~I~G-~~~~v~~A~~~I~~~ 153 (163)
T 3krm_A 83 VKLETHIRVPA--SAAGRVIGKGGKTVNELQNLTAAEVVVPRD-----QTPDE-NDQVIVKIIG-HFYASQMAQRKIRDI 153 (163)
T ss_dssp CCEEEEEEEET--TTHHHHHCGGGHHHHHHHHHHCCEEECCTT-----CCCCT-TSEEEEEEEE-CHHHHHHHHHHHHHH
T ss_pred CceEEEEEcCh--hheeeEEcCCChHHHHHHHHhCCeEEECCC-----CCCCC-CCceEEEEEe-CHHHHHHHHHHHHHH
Confidence 35677888864 25666664 478899999999999987432 12222 2234688999 788999999999999
Q ss_pred HHHHH
Q 001261 1090 LEDFT 1094 (1112)
Q Consensus 1090 ~~e~~ 1094 (1112)
|.+.-
T Consensus 154 i~~~~ 158 (163)
T 3krm_A 154 LAQVK 158 (163)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 98763
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=83.14 E-value=4.5 Score=44.11 Aligned_cols=20 Identities=25% Similarity=0.084 Sum_probs=14.8
Q ss_pred CCCEEEEcCCCChHHHHHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFVL 523 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~ll 523 (1112)
+.-++++|++|+|||+.+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~ 117 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGK 117 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34566789999999975443
|
| >3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A | Back alignment and structure |
|---|
Probab=82.88 E-value=2.7 Score=49.16 Aligned_cols=52 Identities=15% Similarity=0.253 Sum_probs=38.9
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
.|....+.|-||||||+++.. ++.. .+..+|||+|+..+|.|++..+..|+.
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~-l~~~----------~~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAE-IAER----------HAGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHH-HHHH----------SSSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeCCCchHHHHHHHH-HHHH----------hCCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 355678899999999975332 2222 123479999999999999999998864
|
| >1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* | Back alignment and structure |
|---|
Probab=82.56 E-value=1.6 Score=49.68 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=13.4
Q ss_pred CCEEE--EcCCCChHHHHH
Q 001261 505 RDCIG--VAKTGSGKTLAF 521 (1112)
Q Consensus 505 ~dvii--~a~TGsGKT~~~ 521 (1112)
..+++ .|+.|+|||...
T Consensus 51 ~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEEECTTCCSSSHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHH
Confidence 35777 799999999753
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=82.27 E-value=3 Score=40.80 Aligned_cols=72 Identities=19% Similarity=0.327 Sum_probs=51.0
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH---HHHhc-CCeEEEeCchHHHHHHHhcCCccccc
Q 001261 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l 615 (1112)
+.++||.|+++..+..++..+.. .++.+..++|+.+..+.. ..+.. ...|+|+|.- +.. -.++
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~~~----Gld~ 101 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDD----LGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDV-----AAR----GIDI 101 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGG-----GTT----TCCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCh-----hhc----CCch
Confidence 45789999999998887776665 478899999998766543 33333 4689999942 221 1577
Q ss_pred CCceEEEec
Q 001261 616 RRVTYLVMD 624 (1112)
Q Consensus 616 ~~i~~vViD 624 (1112)
..+.+||.-
T Consensus 102 ~~~~~Vi~~ 110 (163)
T 2hjv_A 102 ENISLVINY 110 (163)
T ss_dssp SCCSEEEES
T ss_pred hcCCEEEEe
Confidence 778887763
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=82.21 E-value=2.9 Score=43.47 Aligned_cols=70 Identities=16% Similarity=0.296 Sum_probs=52.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc-----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc-----c-cccCCCCC
Q 001261 714 KGKILIFVHSQEKCDALFRDLLKH-----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-----A-ARGLDVKE 782 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~-----g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v-----~-~~GlDi~~ 782 (1112)
..++||.|+++.-+..++..+... ++.+..++|+.+.......+ ....|+|+|.- + ...+++..
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~~ 166 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPGS 166 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGGG
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCccccc
Confidence 358999999999999999888764 67889999999876654433 25789999942 1 13456667
Q ss_pred ccEEEE
Q 001261 783 LELVIN 788 (1112)
Q Consensus 783 v~~VI~ 788 (1112)
+.+||.
T Consensus 167 ~~~lVi 172 (230)
T 2oxc_A 167 IRLFIL 172 (230)
T ss_dssp CCEEEE
T ss_pred CCEEEe
Confidence 777774
|
| >2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.97 E-value=1.8 Score=37.39 Aligned_cols=67 Identities=19% Similarity=0.242 Sum_probs=49.3
Q ss_pred CcCeEEEEEecCCCccchhhc-ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHH
Q 001261 1010 PEHYEAELEINDFPQNARWKV-THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKR 1088 (1112)
Q Consensus 1010 ~~~~~~~~~INd~pq~~R~~~-t~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~ 1088 (1112)
+..+...|.|.+ ..++..+ ..+.++.+|++.|||.|.+-. . ..++ .+.|.|.. +.|++|+.+|..
T Consensus 7 ~~~~~~~i~VP~--~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~-----~----~~~~--~v~ItG~~-e~v~~A~~~I~~ 72 (83)
T 2dgr_A 7 GGQTTIQVRVPY--RVVGLVVGPKGATIKRIQQRTHTYIVTPG-----R----DKEP--VFAVTGMP-ENVDRAREEIEA 72 (83)
T ss_dssp CCSEEEEEECCH--HHHHHHHTTTTSSHHHHHHHTTCEEECCC-----S----SSCC--EEEEEECT-TTHHHHHHHHHH
T ss_pred CCceEEEEEeCh--HHeeeeECCCchHHHHHHHHhCCeEEecC-----C----CCCC--eEEEEcCH-HHHHHHHHHHHH
Confidence 345677787765 4666666 467899999999999999821 1 1233 37788876 799999999988
Q ss_pred HH
Q 001261 1089 VL 1090 (1112)
Q Consensus 1089 ~~ 1090 (1112)
++
T Consensus 73 ~i 74 (83)
T 2dgr_A 73 HI 74 (83)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=81.24 E-value=3.7 Score=45.35 Aligned_cols=44 Identities=16% Similarity=0.100 Sum_probs=24.8
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEcc
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP 548 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~P 548 (1112)
.|.-+++.|++|+|||..++..+. .+..... ..+.+..++++.-
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~-~~~~~~~-~gg~~~~vlyi~~ 149 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSV-NVQLPPE-KGGLSGKAVYIDT 149 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH-HTTSCGG-GTCCSCEEEEEES
T ss_pred CCcEEEEECCCCCCHhHHHHHHHH-HHhcccc-cCCCCCeEEEEEC
Confidence 356788899999999975444333 3221100 0112446777764
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=81.16 E-value=5.6 Score=38.84 Aligned_cols=72 Identities=15% Similarity=0.262 Sum_probs=50.7
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH---HHHhc-CCeEEEeCchHHHHHHHhcCCccccc
Q 001261 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l 615 (1112)
+.++||.|+++..+..++..+.. .++.+..++|+.+..+.. ..+.. ...|+|+|.- +.. -.++
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~~~----G~d~ 96 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRN----DKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDL-----LAR----GIDV 96 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGG-----GTT----TCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHH----cCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCh-----hhc----CCCc
Confidence 45799999999998877776655 478889999998766543 33333 4689999942 211 1567
Q ss_pred CCceEEEec
Q 001261 616 RRVTYLVMD 624 (1112)
Q Consensus 616 ~~i~~vViD 624 (1112)
..+.+||.-
T Consensus 97 ~~~~~Vi~~ 105 (165)
T 1fuk_A 97 QQVSLVINY 105 (165)
T ss_dssp CSCSEEEES
T ss_pred ccCCEEEEe
Confidence 778887763
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=81.08 E-value=1.5 Score=51.36 Aligned_cols=17 Identities=35% Similarity=0.479 Sum_probs=14.5
Q ss_pred CCEEEEcCCCChHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~ 521 (1112)
+.++++||+|+|||+.+
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999753
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=81.02 E-value=2.9 Score=43.74 Aligned_cols=72 Identities=14% Similarity=0.315 Sum_probs=46.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-----cccc-cCCCCCc
Q 001261 714 KGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAAR-GLDVKEL 783 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-----v~~~-GlDi~~v 783 (1112)
..++||.|+++.-+..++..+... ++.+..++|+..... .+..+..+...|+|+|. .+.. .+++..+
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 174 (237)
T 3bor_A 98 ETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWI 174 (237)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTTC
T ss_pred CceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccC
Confidence 458999999999999998888765 567888888876433 23445567789999993 3333 3667778
Q ss_pred cEEEE
Q 001261 784 ELVIN 788 (1112)
Q Consensus 784 ~~VI~ 788 (1112)
.+||.
T Consensus 175 ~~lVi 179 (237)
T 3bor_A 175 KMFVL 179 (237)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 88775
|
| >2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=80.92 E-value=33 Score=37.41 Aligned_cols=38 Identities=18% Similarity=0.389 Sum_probs=22.9
Q ss_pred ceEEEeccchhhhc---cCChhHHHHHHHhcCCCCcEEEEecc
Q 001261 618 VTYLVMDEADRMFD---MGFEPQITRIVQNIRPDRQTVLFSAT 657 (1112)
Q Consensus 618 i~~vViDEah~~~~---~gf~~~i~~il~~~~~~~q~il~SAT 657 (1112)
--+|||||+|.+.. ..+...+..++... +... ++++++
T Consensus 138 ~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~-~~~~-~i~~g~ 178 (357)
T 2fna_A 138 NVIIVLDEAQELVKLRGVNLLPALAYAYDNL-KRIK-FIMSGS 178 (357)
T ss_dssp CEEEEEETGGGGGGCTTCCCHHHHHHHHHHC-TTEE-EEEEES
T ss_pred CeEEEEECHHHhhccCchhHHHHHHHHHHcC-CCeE-EEEEcC
Confidence 35899999999864 34555565555543 2333 444444
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=80.74 E-value=4.5 Score=45.46 Aligned_cols=72 Identities=15% Similarity=0.277 Sum_probs=55.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc-----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc-c-----cccCCCCC
Q 001261 714 KGKILIFVHSQEKCDALFRDLLKH-----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-A-----ARGLDVKE 782 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~-----g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v-~-----~~GlDi~~ 782 (1112)
..++||.|+++.-+..++..+... ++.+..++|+.+....... +..+...|+|+|.- + ...+++..
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 458999999999999998888765 7889999999987665443 44567899999942 1 23467788
Q ss_pred ccEEEE
Q 001261 783 LELVIN 788 (1112)
Q Consensus 783 v~~VI~ 788 (1112)
+.+||.
T Consensus 153 ~~~vVi 158 (391)
T 1xti_A 153 IKHFIL 158 (391)
T ss_dssp CSEEEE
T ss_pred cCEEEE
Confidence 888885
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=80.60 E-value=2.6 Score=46.47 Aligned_cols=51 Identities=12% Similarity=-0.008 Sum_probs=28.8
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~ 562 (1112)
.|.-+|+.|++|+|||..++. ++.++..+ +..+|+++.- .-..|+...+..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~-ia~~~a~~-------g~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALK-QAKNMSDN-------DDVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHH-HHHHHHTT-------TCEEEEEESS-SCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHH-HHHHHHHc-------CCeEEEEECC-CCHHHHHHHHHH
Confidence 455688889999999964444 44333321 3456776632 223444444433
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=80.32 E-value=3.2 Score=46.74 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=23.8
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEcc
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP 548 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~P 548 (1112)
|.-++|.|++|+|||.. ++.++..+... +..|+|+..
T Consensus 74 G~li~I~G~pGsGKTtl-al~la~~~~~~-------g~~vlyi~~ 110 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTL-ALAIVAQAQKA-------GGTCAFIDA 110 (366)
T ss_dssp TSEEEEEESTTSSHHHH-HHHHHHHHHHT-------TCCEEEEES
T ss_pred CcEEEEEcCCCCChHHH-HHHHHHHHHHC-------CCeEEEEEC
Confidence 45688889999999964 44444444331 345666664
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=80.20 E-value=3 Score=46.70 Aligned_cols=38 Identities=18% Similarity=0.194 Sum_probs=24.1
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEcc
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP 548 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~P 548 (1112)
.|.-+++.|+.|+|||+.++..+... .. .+..++++.-
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~-~~-------~g~~vlyi~~ 97 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANA-QA-------AGGIAAFIDA 97 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH-HH-------TTCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-Hh-------CCCeEEEEEC
Confidence 35668889999999997544444333 32 1445666653
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.16 E-value=4 Score=40.40 Aligned_cols=71 Identities=15% Similarity=0.207 Sum_probs=51.1
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH---HHHhc-CCeEEEeCchHHHHHHHhcCCccccc
Q 001261 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l 615 (1112)
+.++||.|+++..+..++..+.. .++.+..++|+.+..+.. ..+.. ...|+|+|.- +. .-.++
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~-----~~----~Gid~ 100 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQ----DGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNV-----CA----RGIDV 100 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHT----TTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCS-----CC----TTTCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecc-----hh----cCCCc
Confidence 45899999999998877766654 578899999998876553 33333 4689999942 11 22577
Q ss_pred CCceEEEe
Q 001261 616 RRVTYLVM 623 (1112)
Q Consensus 616 ~~i~~vVi 623 (1112)
..+.+||.
T Consensus 101 ~~~~~Vi~ 108 (175)
T 2rb4_A 101 KQVTIVVN 108 (175)
T ss_dssp TTEEEEEE
T ss_pred ccCCEEEE
Confidence 78888884
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=80.16 E-value=5.1 Score=40.50 Aligned_cols=71 Identities=13% Similarity=0.237 Sum_probs=51.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhc-----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-----cccc-cCCCCC
Q 001261 714 KGKILIFVHSQEKCDALFRDLLKH-----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAAR-GLDVKE 782 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~-----g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-----v~~~-GlDi~~ 782 (1112)
..++||.|+++.-+..++..+... ++.+..++|+.+....... + .+...|+|+|. .+.. .+++.+
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 347999999999999988888764 6788999999886554322 2 34678999994 1222 346677
Q ss_pred ccEEEE
Q 001261 783 LELVIN 788 (1112)
Q Consensus 783 v~~VI~ 788 (1112)
+.+||.
T Consensus 147 ~~~lVi 152 (206)
T 1vec_A 147 VQMIVL 152 (206)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 777775
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1112 | ||||
| d1hv8a1 | 208 | c.37.1.19 (A:3-210) Putative DEAD box RNA helicase | 5e-52 | |
| d1wrba1 | 238 | c.37.1.19 (A:164-401) putative ATP-dependent RNA h | 5e-51 | |
| d2j0sa1 | 222 | c.37.1.19 (A:22-243) Probable ATP-dependent RNA he | 5e-51 | |
| d2g9na1 | 218 | c.37.1.19 (A:21-238) Initiation factor 4a {Human ( | 7e-51 | |
| d1qdea_ | 212 | c.37.1.19 (A:) Initiation factor 4a {Baker's yeast | 2e-50 | |
| d1t6na_ | 207 | c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 | 4e-45 | |
| d1s2ma1 | 206 | c.37.1.19 (A:46-251) Putative ATP-dependent RNA he | 1e-43 | |
| d1veca_ | 206 | c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Huma | 1e-42 | |
| d2bmfa2 | 305 | c.37.1.14 (A:178-482) Dengue virus helicase {Dengu | 1e-41 | |
| d1q0ua_ | 209 | c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR | 5e-37 | |
| d1gkub1 | 237 | c.37.1.16 (B:1-250) Helicase-like "domain" of reve | 4e-35 | |
| d1oywa2 | 206 | c.37.1.19 (A:1-206) RecQ helicase domain {Escheric | 5e-31 | |
| d1a1va2 | 299 | c.37.1.14 (A:326-624) HCV helicase domain {Human h | 1e-29 | |
| d2p6ra3 | 202 | c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus | 4e-28 | |
| d1fuka_ | 162 | c.37.1.19 (A:) Initiation factor 4a {Baker's yeast | 5e-27 | |
| d1hv8a2 | 155 | c.37.1.19 (A:211-365) Putative DEAD box RNA helica | 7e-22 | |
| d1wp9a2 | 286 | c.37.1.19 (A:201-486) putative ATP-dependent RNA h | 1e-21 | |
| d2j0sa2 | 168 | c.37.1.19 (A:244-411) Probable ATP-dependent RNA h | 1e-19 | |
| d1jr6a_ | 138 | c.37.1.14 (A:) HCV helicase domain {Human hepatiti | 6e-18 | |
| d1gkub2 | 248 | c.37.1.16 (B:251-498) Helicase-like "domain" of re | 9e-18 | |
| d1wp9a1 | 200 | c.37.1.19 (A:1-200) putative ATP-dependent RNA hel | 2e-17 | |
| d1t5la2 | 181 | c.37.1.19 (A:415-595) Nucleotide excision repair e | 4e-16 | |
| d1s2ma2 | 171 | c.37.1.19 (A:252-422) Putative ATP-dependent RNA h | 1e-15 | |
| d2rb4a1 | 168 | c.37.1.19 (A:307-474) ATP-dependent RNA helicase D | 3e-15 | |
| d1t5ia_ | 168 | c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 | 8e-15 | |
| d1c4oa2 | 174 | c.37.1.19 (A:410-583) Nucleotide excision repair e | 5e-14 | |
| d2fwra1 | 200 | c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar | 6e-13 | |
| d2p6ra4 | 201 | c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglob | 1e-08 | |
| d1tf5a4 | 175 | c.37.1.19 (A:396-570) Translocation ATPase SecA, n | 1e-07 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 3e-07 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 6e-07 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 3e-06 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 1e-05 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 1e-05 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 7e-05 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 0.001 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 3e-07 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 1e-06 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 2e-06 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 1e-05 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 1e-05 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 3e-05 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 2e-04 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 5e-04 | |
| d1a1va1 | 136 | c.37.1.14 (A:190-325) HCV helicase domain {Human h | 2e-06 | |
| d1sa0e_ | 138 | a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus | 9e-05 | |
| d1sa0e_ | 138 | a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus | 2e-04 | |
| d1sa0e_ | 138 | a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus | 3e-04 | |
| d1sa0e_ | 138 | a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus | 0.002 | |
| d1sa0e_ | 138 | a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus | 0.002 | |
| d1yksa2 | 299 | c.37.1.14 (A:325-623) YFV helicase domain {Yellow | 4e-04 | |
| d1ij5a_ | 321 | a.39.1.9 (A:) Cbp40 (plasmodial specific CaII-bind | 7e-04 | |
| d1yksa1 | 140 | c.37.1.14 (A:185-324) YFV helicase domain {Yellow | 0.001 |
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 179 bits (455), Expect = 5e-52
Identities = 68/212 (32%), Positives = 114/212 (53%), Gaps = 11/212 (5%)
Query: 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGR-DCIGVAKTGSGKTLAFVLPML 526
+++ L+ I+ IR +EKP IQ + +P+ ++ + + A+TGSGKT +F +P++
Sbjct: 5 NFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLI 64
Query: 527 RHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISE 586
+ + G +I+ PTREL Q+ +I ++ +YGG + QI
Sbjct: 65 ELVNENN------GIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKA 118
Query: 587 LKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646
LK IVV TPGR++D + NL+ V Y ++DEAD M +MGF + +I+
Sbjct: 119 LK-NANIVVGTPGRILDHINR---GTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACN 174
Query: 647 PDRQTVLFSATFPRQVEILARKVLNKPVEIQV 678
D++ +LFSAT PR++ LA+K + I+
Sbjct: 175 KDKRILLFSATMPREILNLAKKYMGDYSFIKA 206
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Score = 177 bits (450), Expect = 5e-51
Identities = 89/237 (37%), Positives = 136/237 (57%), Gaps = 13/237 (5%)
Query: 453 LELKIHGKDV--PKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGV 510
+ + + G D I+ + + L I I +Y++P PIQ A+P I+ RD +
Sbjct: 5 IPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMAC 64
Query: 511 AKTGSGKTLAFVLPMLRHIKDQPPV----AAGDGPVGLIMAPTRELVQQIHSDIRKFAKV 566
A+TGSGKT AF++P++ H+ Q + P LI+APTREL QI S+ +KF+
Sbjct: 65 AQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLN 124
Query: 567 MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEA 626
+R VYGG+ QI E++ G ++V TPGR++D + +L Y+V+DEA
Sbjct: 125 TPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEK---NKISLEFCKYIVLDEA 181
Query: 627 DRMFDMGFEPQITRIVQNIR----PDRQTVLFSATFPRQVEILARKVLNKPVEIQVG 679
DRM DMGFEPQI +I++ +RQT++FSATFP++++ LA L + + VG
Sbjct: 182 DRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVG 238
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Score = 177 bits (449), Expect = 5e-51
Identities = 71/226 (31%), Positives = 113/226 (50%), Gaps = 8/226 (3%)
Query: 454 ELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKT 513
+++ + T+ GL ++ I +EKP IQ +A+ I+ GRD I +++
Sbjct: 4 KVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQS 63
Query: 514 GSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVP 573
G+GKT F + +L+ + Q LI+APTREL QI + M V+C
Sbjct: 64 GTGKTATFSISVLQCLDIQVR-----ETQALILAPTRELAVQIQKGLLALGDYMNVQCHA 118
Query: 574 VYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG 633
GG+ V + I +L G +V TPGR+ D++ + R + LV+DEAD M + G
Sbjct: 119 CIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRR---RSLRTRAIKMLVLDEADEMLNKG 175
Query: 634 FEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVG 679
F+ QI + + + P Q VL SAT P ++ + K + P+ I V
Sbjct: 176 FKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVK 221
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Length = 218 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 176 bits (447), Expect = 7e-51
Identities = 68/220 (30%), Positives = 110/220 (50%), Gaps = 9/220 (4%)
Query: 461 DVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLA 520
+ + + ++ L+ ++ I +EKP IQ +A+ + G D I A++G+GKT
Sbjct: 6 NWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTAT 65
Query: 521 FVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGV 580
F + +L+ I+ L++APTREL QQI + MG C GG+ V
Sbjct: 66 FAISILQQIELDLK-----ATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNV 120
Query: 581 AQQISELKRGT-EIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQIT 639
++ +L+ I+V TPGR+ D+L + + + + V+DEAD M GF+ QI
Sbjct: 121 RAEVQKLQMEAPHIIVGTPGRVFDMLNR---RYLSPKYIKMFVLDEADEMLSRGFKDQIY 177
Query: 640 RIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVG 679
I Q + + Q VL SAT P V + +K + P+ I V
Sbjct: 178 DIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVK 217
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 175 bits (443), Expect = 2e-50
Identities = 66/217 (30%), Positives = 102/217 (47%), Gaps = 9/217 (4%)
Query: 462 VPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAF 521
K + + L ++ + +E+P IQ +A+ I+ G D + A++G+GKT F
Sbjct: 5 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTF 64
Query: 522 VLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVA 581
+ L+ I P L++APTREL QI + A M ++ GG+
Sbjct: 65 SIAALQRIDTSVK-----APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFV 119
Query: 582 QQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRI 641
+ L R +IVV TPGR+ D + + ++ ++DEAD M GF+ QI +I
Sbjct: 120 EDAEGL-RDAQIVVGTPGRVFDNIQR---RRFRTDKIKMFILDEADEMLSSGFKEQIYQI 175
Query: 642 VQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQV 678
+ P Q VL SAT P V + K + PV I V
Sbjct: 176 FTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILV 212
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Score = 159 bits (403), Expect = 4e-45
Identities = 61/214 (28%), Positives = 105/214 (49%), Gaps = 11/214 (5%)
Query: 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLR 527
+ L +++ I +E P +Q + +P + G D + AK+G GKT FVL L+
Sbjct: 2 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ 61
Query: 528 HIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGV-RCVPVYGGSGVAQQISE 586
++ L+M TREL QI + +F+K M + +GG + +
Sbjct: 62 QLEPVTG-----QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV 116
Query: 587 LKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQN 644
LK+ IVV TPGR IL + K NL+ + + ++DE D+M + + + I +
Sbjct: 117 LKKNCPHIVVGTPGR---ILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRM 173
Query: 645 IRPDRQTVLFSATFPRQVEILARKVLNKPVEIQV 678
++Q ++FSAT +++ + RK + P+EI V
Sbjct: 174 TPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 207
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 155 bits (391), Expect = 1e-43
Identities = 78/212 (36%), Positives = 116/212 (54%), Gaps = 8/212 (3%)
Query: 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLR 527
T+ L +++ I + +EKP PIQ +A+PV ++GRD + AK G+GKT AFV+P L
Sbjct: 2 TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLE 61
Query: 528 HIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISEL 587
+K + LIM PTREL Q +R K G+ C+ GG+ + I L
Sbjct: 62 KVKPKLN-----KIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRL 116
Query: 588 KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 647
I+V TPGR++D+ K+ +L + +MDEAD+M F+ I +I+ + P
Sbjct: 117 NETVHILVGTPGRVLDLASR---KVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPP 173
Query: 648 DRQTVLFSATFPRQVEILARKVLNKPVEIQVG 679
Q++LFSATFP V+ K L+KP EI +
Sbjct: 174 THQSLLFSATFPLTVKEFMVKHLHKPYEINLM 205
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Score = 152 bits (384), Expect = 1e-42
Identities = 62/211 (29%), Positives = 112/211 (53%), Gaps = 9/211 (4%)
Query: 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPML 526
+ L +++ I ++ +EKP PIQ +++P+ +SGRD + AK G+GK+ A+++P+L
Sbjct: 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLL 62
Query: 527 RHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQIS 585
+ + +++ PTREL Q+ + +K M G + + GG+ + I
Sbjct: 63 ERLDLKKD-----NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM 117
Query: 586 ELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI 645
L +V+ TPGR++D++ + + V +V+DEAD++ F + I+ +
Sbjct: 118 RLDDTVHVVIATPGRILDLIKK---GVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTL 174
Query: 646 RPDRQTVLFSATFPRQVEILARKVLNKPVEI 676
+RQ +L+SATFP V+ L KP EI
Sbjct: 175 PKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Score = 153 bits (386), Expect = 1e-41
Identities = 52/342 (15%), Positives = 99/342 (28%), Gaps = 64/342 (18%)
Query: 500 VIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSD 559
+ R I G+GKT ++ ++R A G LI+APTR + ++
Sbjct: 5 IFRKKRLTIMDLHPGAGKTKRYLPAIVRE-------AIKRGLRTLILAPTRVVAAEMEEA 57
Query: 560 IRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVT 619
+R + +E + + L + +
Sbjct: 58 LRGLPIRYQTPAI-----------RAEHTGREIVDLMCHATFTMRLLSP----IRVPNYN 102
Query: 620 YLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVG 679
++MDEA + + + + +AT P + +
Sbjct: 103 LIIMDEAHFTDPASIAARGYISTRVEMGEAAGIFMTATPPGSRDPFPQS----------- 151
Query: 680 GRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGY 739
N I PE + KGK + FV S + + + L K+G
Sbjct: 152 -----NAPIMDEEREIPERSWNSGHEWVT---DFKGKTVWFVPSIKAGNDIAACLRKNGK 203
Query: 740 PCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVK---------ELELVINFD 790
+ L ++ ++N + ++ T ++ G + K ++ VI D
Sbjct: 204 KVIQLSRKTFDSEYI----KTRTNDWDFVVTTDISEMGANFKAERVIDPRRCMKPVILTD 259
Query: 791 APNH----------YEDYVHRVGRTGRAGRKGCAITFISEED 822
+ R GR GR + E
Sbjct: 260 GEERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYIYMGEP 301
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Score = 136 bits (343), Expect = 5e-37
Identities = 52/211 (24%), Positives = 95/211 (45%), Gaps = 4/211 (1%)
Query: 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLR 527
+ + I+E I+ L + KP IQ + +P + G +G ++TG+GKT A++LP+
Sbjct: 2 QFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPI-M 60
Query: 528 HIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISEL 587
++ + + K + + GG+ + + +L
Sbjct: 61 EKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKL 120
Query: 588 KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 647
IV+ TPGR+ D + + ++ LV+DEAD M DMGF + +I +
Sbjct: 121 NVQPHIVIGTPGRINDFIRE---QALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPK 177
Query: 648 DRQTVLFSATFPRQVEILARKVLNKPVEIQV 678
D Q ++FSAT P +++ +K + P + V
Sbjct: 178 DLQMLVFSATIPEKLKPFLKKYMENPTFVHV 208
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 132 bits (332), Expect = 4e-35
Identities = 39/225 (17%), Positives = 69/225 (30%), Gaps = 33/225 (14%)
Query: 463 PKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFV 522
+ + + L + +E RK +P IQ I+ A TG GKT +
Sbjct: 18 AASLCLFPEDFLLKEFVEFFRK-CVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGL 76
Query: 523 LPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQ 582
L ++ PT LV Q IRK+A+ GV + G
Sbjct: 77 AMSLFLALKGKRC--------YVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRI 128
Query: 583 ------QISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD----- 631
+ R +IV+ T + L ++ +D+ D +
Sbjct: 129 PKREKENFMQNLRNFKIVITTTQFLSKHYR-------ELGHFDFIFVDDVDAILKASKNV 181
Query: 632 ------MGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVL 670
+GF + ++ +AT + + + L
Sbjct: 182 DKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQL 226
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Score = 119 bits (298), Expect = 5e-31
Identities = 36/213 (16%), Positives = 77/213 (36%), Gaps = 22/213 (10%)
Query: 473 GLTSKIMETIRKL-NYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKD 531
L S + +++ Y++ P Q + + ++SGRDC+ V TG GK+L + +P L
Sbjct: 8 NLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLN-- 65
Query: 532 QPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGT 591
+ ++++P L++ ++ +
Sbjct: 66 ---------GLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQI 116
Query: 592 EIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQ----ITRIVQNIRP 647
++ P R++ + L +DEA + G + + ++ P
Sbjct: 117 RLLYIAPERLMLDNFL---EHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFP 173
Query: 648 DRQTVLFSATFPRQV--EILARKVLNKPVEIQV 678
+ +AT +I+ LN P+ IQ+
Sbjct: 174 TLPFMALTATADDTTRQDIVRLLGLNDPL-IQI 205
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 117 bits (295), Expect = 1e-29
Identities = 32/173 (18%), Positives = 57/173 (32%), Gaps = 20/173 (11%)
Query: 679 GGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHG 738
G +V + +I ++ F L E + G+ LIF HS++KCD L L+ G
Sbjct: 2 GSVTVPHPNIEEVALSTTGEIPFYGKAIPL-EVIKGGRHLIFCHSKKKCDELAAKLVALG 60
Query: 739 YPCLSLHGAKDQTDR----------ESTISDFKSNVCNLLIATSVAARG---LDVKELEL 785
++ + D + + + + +I + +
Sbjct: 61 INAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFT 120
Query: 786 VINFDAPNHYEDYVHRVGRTGRAGRKGCA-ITFISEEDAKYSPDLVKALELSE 837
+ P R GRTGR G+ G E + + + L E
Sbjct: 121 IETTTLPQDAVSRTQRRGRTGR-GKPGIYRFVAPGERPS----GMFDSSVLCE 168
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 110 bits (276), Expect = 4e-28
Identities = 37/198 (18%), Positives = 79/198 (39%), Gaps = 19/198 (9%)
Query: 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQ 532
++S + +++ E+ P QA+A+ + SG++ + T +GKTL + M+R
Sbjct: 9 SISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKG 68
Query: 533 PPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTE 592
+ P R L + + +K+ K+ + + E +
Sbjct: 69 GKSL--------YVVPLRALAGEKYESFKKWEKIGLRIGISTGDY----ESRDEHLGDCD 116
Query: 593 IVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR---PDR 649
I+V T + ++ + + ++ V+ LV+DE + + +V +R
Sbjct: 117 IIVTTSEKADSLIRN---RASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKAL 173
Query: 650 QTVLFSATFPRQVEILAR 667
+ + SAT P V +A
Sbjct: 174 RVIGLSATAPN-VTEIAE 190
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 106 bits (264), Expect = 5e-27
Identities = 52/163 (31%), Positives = 90/163 (55%), Gaps = 2/163 (1%)
Query: 688 ITQ-LVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHG 746
I Q V V E ++ L +L + +IF +++ K + L L + +++
Sbjct: 1 IKQFYVNVEEEEYKYECLTDLYDS-ISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYS 59
Query: 747 AKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTG 806
Q +R++ + +F+S +LI+T + ARG+DV+++ LVIN+D P + E+Y+HR+GR G
Sbjct: 60 DLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGG 119
Query: 807 RAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALAD 849
R GRKG AI F++ ED +L K + +P D+ L +
Sbjct: 120 RFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIATLLN 162
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 155 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 91.2 bits (225), Expect = 7e-22
Identities = 55/152 (36%), Positives = 83/152 (54%), Gaps = 2/152 (1%)
Query: 685 NKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSL 744
N +I Q E++RF L LL ++ L+F ++ L L G+ ++
Sbjct: 1 NANIEQSYVEVNENERFEALCRLLKN--KEFYGLVFCKTKRDTKELASMLRDIGFKAGAI 58
Query: 745 HGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGR 804
HG Q+ RE I FK +LIAT V +RG+DV +L VIN+ P + E Y+HR+GR
Sbjct: 59 HGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGR 118
Query: 805 TGRAGRKGCAITFISEEDAKYSPDLVKALELS 836
TGRAG+KG AI+ I+ + K + +A++L
Sbjct: 119 TGRAGKKGKAISIINRREYKKLRYIERAMKLK 150
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 94.6 bits (234), Expect = 1e-21
Identities = 42/213 (19%), Positives = 88/213 (41%), Gaps = 27/213 (12%)
Query: 621 LVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGG 680
L + A + + + ++ + + + A+ EI + K + K + +
Sbjct: 80 LKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKAS----KEIFSDKRMKKAISL---- 131
Query: 681 RSVVNKDITQLVEVRPESDRFLRLLELLGEWYEK---GKILIFVHSQEKCDALFRDLLKH 737
+ Q E+ + + +L E++ E ++ KI++F + +E + +L+K
Sbjct: 132 -------LVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKD 184
Query: 738 GYPCLSLHGAKDQTDR--------ESTISDFKSNVCNLLIATSVAARGLDVKELELVINF 789
G G + + + + +F N+L+ATSV GLDV E++LV+ +
Sbjct: 185 GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFY 244
Query: 790 DAPNHYEDYVHRVGRTGRAGRKGCAITFISEED 822
+ + R GRTGR G I +++
Sbjct: 245 EPVPSAIRSIQRRGRTGRHM-PGRVIILMAKGT 276
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Score = 85.0 bits (209), Expect = 1e-19
Identities = 56/160 (35%), Positives = 90/160 (56%), Gaps = 2/160 (1%)
Query: 686 KDITQ-LVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSL 744
+ I Q V V E +F L +L + +IF +++ K D L + + + S+
Sbjct: 6 EGIKQFFVAVEREEWKFDTLCDLYDT-LTITQAVIFCNTKRKVDWLTEKMREANFTVSSM 64
Query: 745 HGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGR 804
HG Q +RES + +F+S +LI+T V ARGLDV ++ L+IN+D PN+ E Y+HR+GR
Sbjct: 65 HGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGR 124
Query: 805 TGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDL 844
+GR GRKG AI F+ +D + D+ + +P ++
Sbjct: 125 SGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNV 164
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 138 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 79.4 bits (195), Expect = 6e-18
Identities = 34/147 (23%), Positives = 59/147 (40%), Gaps = 13/147 (8%)
Query: 679 GGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHG 738
G +V + +I ++ F L E + G+ LIF HS++KCD L L+ G
Sbjct: 1 GSVTVPHPNIEEVALSTTGEIPFYGKAIPL-EVIKGGRHLIFCHSKKKCDELAAKLVALG 59
Query: 739 YPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKE---LELVINFDAPNHY 795
++ + R +S +N +++AT G ++ + P
Sbjct: 60 INAVAYY-------RGLDVSVIPTNGDVVVVATDALMTGFTGDFDSVIDCNTSDGKPQDA 112
Query: 796 EDYVHRVGRTGRAGRKGCAITFISEED 822
R GRTGR G+ G F++ +
Sbjct: 113 VSRTQRRGRTGR-GKPG-IYRFVAPGE 137
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 82.1 bits (202), Expect = 9e-18
Identities = 36/249 (14%), Positives = 74/249 (29%), Gaps = 37/249 (14%)
Query: 688 ITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGA 747
+ + +V + L +L + +I+ + E+ + ++ L
Sbjct: 1 VRNVEDVAVNDESISTLSSILEK--LGTGGIIYARTGEEAEEIYESLKNK------FRIG 52
Query: 748 KDQTDRESTISDFKSNVCNLLIATS----VAARGLDVKE-LELVINFDAPNHYEDYVHRV 802
++ F + LI T+ RGLD+ E + + P+ + +
Sbjct: 53 IVTATKKGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPS----FRVTI 108
Query: 803 GRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAKVNQ----- 857
+ + + L+ A+E V + LK + +
Sbjct: 109 EDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVRE 168
Query: 858 ---------------GLEQAHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEEDKSDS 902
G G G F E+D + +A +AK Y E D
Sbjct: 169 GEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKLYDIEFKSIDE 228
Query: 903 DDEDEGIRK 911
D ++ R+
Sbjct: 229 VDFEKLSRE 237
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 79.8 bits (195), Expect = 2e-17
Identities = 41/211 (19%), Positives = 74/211 (35%), Gaps = 13/211 (6%)
Query: 482 IRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGP 541
+ + + +P Q +C+ V TG GKTL ++ +
Sbjct: 2 VLRRDLIQPRIYQEVIYAKCK-ETNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVL---- 56
Query: 542 VGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM 601
++APT+ LV Q R+ + + V + G ++ R IV
Sbjct: 57 ---MLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIE 113
Query: 602 IDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQ 661
D+L +L V+ +V DEA R I R + + + +A+
Sbjct: 114 NDLLA----GRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGST 169
Query: 662 VEILARKVLNKPVEIQVGGRSVVNKDITQLV 692
E + +V+N + RS + D+ V
Sbjct: 170 PEKIM-EVINNLGIEHIEYRSENSPDVRPYV 199
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Length = 181 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Score = 75.2 bits (184), Expect = 4e-16
Identities = 27/148 (18%), Positives = 57/148 (38%), Gaps = 1/148 (0%)
Query: 692 VEVRPESDRFLRLLELLGEWYEKG-KILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQ 750
++VRP + L+ + E E+ + L+ +++ + L L + G LH
Sbjct: 8 IDVRPTKGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKT 67
Query: 751 TDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGR 810
+R I D + ++L+ ++ GLD+ E+ LV DA R
Sbjct: 68 LERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 127
Query: 811 KGCAITFISEEDAKYSPDLVKALELSEQ 838
A + + + A++ +++
Sbjct: 128 ARNANGHVIMYADTITKSMEIAIQETKR 155
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 73.9 bits (180), Expect = 1e-15
Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 1/160 (0%)
Query: 686 KDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLH 745
K ITQ E + L L + + + +IF +S + + L + + GY C H
Sbjct: 5 KGITQYYAFVEERQKLHCLNTLFSK-LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSH 63
Query: 746 GAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRT 805
Q +R +F+ L+ + + RG+D++ + +VINFD P E Y+HR+GR+
Sbjct: 64 ARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRS 123
Query: 806 GRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLK 845
GR G G AI I+ D + + L +P +
Sbjct: 124 GRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATID 163
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.3 bits (173), Expect = 8e-15
Identities = 52/158 (32%), Positives = 91/158 (57%), Gaps = 2/158 (1%)
Query: 688 ITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGA 747
+ Q ++++ +L +LL E +++IFV S ++C AL + L++ +P +++H
Sbjct: 2 LQQYYVKLKDNEKNRKLFDLLDV-LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRG 60
Query: 748 KDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGR 807
Q +R S FK +L+AT++ RG+D++ + + N+D P + Y+HRV R GR
Sbjct: 61 MPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGR 120
Query: 808 AGRKGCAITFIS-EEDAKYSPDLVKALELSEQVVPDDL 844
G KG AITF+S E DAK D+ E++ +PD++
Sbjct: 121 FGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 158
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Score = 69.3 bits (169), Expect = 5e-14
Identities = 37/146 (25%), Positives = 66/146 (45%), Gaps = 5/146 (3%)
Query: 692 VEVRPESDRFLRLLELLGEWYEKG-KILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQ 750
V V+P ++ L L+E + E +G + L+ V + + L L++HG LH D
Sbjct: 8 VRVKPTENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDA 67
Query: 751 TDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHR--VGRTGRA 808
R++ I D + + L+ ++ GLD+ E+ LV DA R + GRA
Sbjct: 68 FKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 127
Query: 809 GRKGCAITFISEEDAKYSPDLVKALE 834
R ++ + + S + +A+E
Sbjct: 128 ARNARGEVWLYAD--RVSEAMQRAIE 151
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 66.8 bits (162), Expect = 6e-13
Identities = 22/122 (18%), Positives = 50/122 (40%), Gaps = 6/122 (4%)
Query: 698 SDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTI 757
++ +L E+L E + K KI+IF E + + + ++ + +RE +
Sbjct: 78 KNKIRKLREIL-ERHRKDKIIIFTRHNELVYRISKV-----FLIPAITHRTSREEREEIL 131
Query: 758 SDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITF 817
F++ ++++ V G+DV + + + +Y+ R+GR R +
Sbjct: 132 EGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVL 191
Query: 818 IS 819
Sbjct: 192 YE 193
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 54.1 bits (129), Expect = 1e-08
Identities = 29/193 (15%), Positives = 61/193 (31%), Gaps = 43/193 (22%)
Query: 673 PVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGK-ILIFVHSQEKCDALF 731
PV + G V+ + +L + + R ++ EL+ E + +L+F ++ +
Sbjct: 1 PVPLVEG---VLCEGTLELFDGAFSTSRRVKFEELVEECVAENGGVLVFESTRRGAEKTA 57
Query: 732 RDLLKHGYPCLS------------------------------LHGAKDQTDRESTISDFK 761
L + H R F+
Sbjct: 58 VKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFR 117
Query: 762 SNVCNLLIATSVAARGLDVKELELVI-------NFDAPNHYEDYVHRVGRTGRAGR--KG 812
+++AT A G+++ +++ + +Y GR GR G +G
Sbjct: 118 RGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERG 177
Query: 813 CAITFISEEDAKY 825
AI + + D +
Sbjct: 178 EAIIIVGKRDREI 190
|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Score = 50.3 bits (120), Expect = 1e-07
Identities = 40/189 (21%), Positives = 69/189 (36%), Gaps = 23/189 (12%)
Query: 681 RSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKG-KILIFVHSQEKCDALFRDLLKHGY 739
R VV D L+ R +F + E + + Y G +L+ + E + + + L G
Sbjct: 1 RPVVRDDRPDLI-YRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGI 59
Query: 740 PCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDA-------- 791
P L+ + + + + + IAT++A RG D+K E V
Sbjct: 60 PHQVLNAKNHEREAQIIEEAGQKGA--VTIATNMAGRGTDIKLGEGVKELGGLAVVGTER 117
Query: 792 PNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSF 851
GR+GR G G ++S ED EL + + A+ D F
Sbjct: 118 HESRRIDNQLRGRSGRQGDPGITQFYLSMED-----------ELMRRFGAERTMAMLDRF 166
Query: 852 MAKVNQGLE 860
+ ++
Sbjct: 167 GMDDSTPIQ 175
|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.9 bits (121), Expect = 3e-07
Identities = 23/127 (18%), Positives = 54/127 (42%)
Query: 6 RDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKER 65
R + +E + KS+ S + +D+ +KEKE + R + E +R
Sbjct: 169 RKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQR 228
Query: 66 EEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKS 125
+ ++ +++ +E + E E +R + + +ER + +E+E+ + +E +
Sbjct: 229 KNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRI 288
Query: 126 RDREKRR 132
E +
Sbjct: 289 MKNEIQD 295
|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.1 bits (119), Expect = 6e-07
Identities = 12/139 (8%), Positives = 51/139 (36%)
Query: 11 EKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEKRE 70
+K+ + K ++E T + + + + + E +
Sbjct: 161 KKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASA 220
Query: 71 RAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRDREK 130
+ + + + ++ E+++R + ++ + + +R + +E++R + + + ++
Sbjct: 221 KMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKE 280
Query: 131 RRKVESDDSDEDKDRDRKR 149
+ ES + + +
Sbjct: 281 GFQKESRIMKNEIQDLQTK 299
|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.2 bits (114), Expect = 3e-06
Identities = 23/228 (10%), Positives = 68/228 (29%), Gaps = 3/228 (1%)
Query: 11 EKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEKRE 70
++ S + KE + RD ++++ ++ +
Sbjct: 71 LDLHRDSEREAIEVFIRSSFKDVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQV 130
Query: 71 RAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRDREK 130
E E + + R ++ + ++ E R+ + + + +
Sbjct: 131 IFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTD 190
Query: 131 RRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVEDDSD 190
E + R + + + R N E E ++ ++ ++
Sbjct: 191 AILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTE 250
Query: 191 K--KEKKTREEELE-DEQRKLDEEMEKRRRRVQEWQELKRKKEESERE 235
K ++ +E E KL E+ + + Q+ + + + + +
Sbjct: 251 KMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQT 298
|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.9 bits (108), Expect = 1e-05
Identities = 21/232 (9%), Positives = 71/232 (30%), Gaps = 3/232 (1%)
Query: 9 DREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEK 68
+ + + + +S D H + + +++ +
Sbjct: 46 QKAIAHYEQQMGQKVQLPTESLQELLDLHRDSEREAIEVFIRSSFKDVDHLFQKELAAQL 105
Query: 69 RERAREKEREREKRDREREDRERERERERERRERDREREKRERERD---RDKEKDRERKS 125
++ + ++ ++ +R + E + + + +++
Sbjct: 106 EKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYY 165
Query: 126 RDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLV 185
+ K + E K ++ D +E+ + + S +
Sbjct: 166 EEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHE 225
Query: 186 EDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENR 237
+++ + +E ++ ++L E+ME R ++ + QE + E+E
Sbjct: 226 MQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQL 277
|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.9 bits (108), Expect = 1e-05
Identities = 28/215 (13%), Positives = 77/215 (35%), Gaps = 2/215 (0%)
Query: 10 REKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEKR 69
+ ++ Q +D + +E R + + E +
Sbjct: 86 IRSSFKDVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYS 145
Query: 70 ERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRDRE 129
+ + ++ +D +++ E R+ + + +E D + D+ +++E
Sbjct: 146 KPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKE 205
Query: 130 KRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVEDDS 189
+ +S + + +R ++ E+ +ERS + E E+ R +L+++
Sbjct: 206 IEVERVKAESAQASAKMLHEMQRKNEQMMEQ-KERSYQEHLKQLTEKMENDRVQLLKEQE 264
Query: 190 DKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQE 224
K +E+E + + +E + +Q+ Q
Sbjct: 265 RTLALKLQEQE-QLLKEGFQKESRIMKNEIQDLQT 298
|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (102), Expect = 7e-05
Identities = 8/122 (6%), Positives = 48/122 (39%)
Query: 1 MAHSHRDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRD 60
+ + ++ + +++ + ++ + + R+ ++ ++
Sbjct: 178 LQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQK 237
Query: 61 REKEREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKD 120
+E ++ + E +R + +E+E + +E+E+ ++ +++ ++ ++
Sbjct: 238 ERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQ 297
Query: 121 RE 122
+
Sbjct: 298 TK 299
|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.7 bits (92), Expect = 0.001
Identities = 26/199 (13%), Positives = 66/199 (33%), Gaps = 4/199 (2%)
Query: 10 REKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEKR 69
+K + ++ S S E+E R + + +++
Sbjct: 106 EKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYY 165
Query: 70 ERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKDRERKSRDRE 129
E R+ + E + +E + + + E+EK E + E
Sbjct: 166 EEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHE 225
Query: 130 KRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESPREKLVEDDS 189
+RK E +++ ++ ++ +R + R + ++ + +
Sbjct: 226 MQRKNEQMMEQKERSYQEHLKQLT----EKMENDRVQLLKEQERTLALKLQEQEQLLKEG 281
Query: 190 DKKEKKTREEELEDEQRKL 208
+KE + + E++D Q K+
Sbjct: 282 FQKESRIMKNEIQDLQTKM 300
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 46.4 bits (109), Expect = 2e-06
Identities = 23/151 (15%), Positives = 35/151 (23%), Gaps = 32/151 (21%)
Query: 510 VAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGV 569
A TGSGK+ G L++ P+ + + K V
Sbjct: 14 HAPTGSGKSTKVPAAYAAQ-----------GYKVLVLNPSVAATLGFGAYMSKAHGVDPN 62
Query: 570 RCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEA--- 626
V I +P + ++ DE
Sbjct: 63 IRTGVR----------------TITTGSPITYSTYGKFLADGGCSGGAYDIIICDECHST 106
Query: 627 DRMFDMGFEPQITRIVQNIRPDRQTVLFSAT 657
D +G R VL +AT
Sbjct: 107 DATSILGI--GTVLDQAETAGARLVVLATAT 135
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Score = 41.5 bits (97), Expect = 4e-04
Identities = 26/163 (15%), Positives = 48/163 (29%), Gaps = 28/163 (17%)
Query: 685 NKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSL 744
N +I + P + + +K F+ S + + L K G + L
Sbjct: 10 NGEIEDVQTDIPSEPW-NTGHDWILA--DKRPTAWFLPSIRAANVMAASLRKAGKSVVVL 66
Query: 745 HGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN---------FDAPNHY 795
+ E K + ++AT +A G ++ +E V++ D
Sbjct: 67 NRKT----FEREYPTIKQKKPDFILATDIAEMGANL-CVERVLDCRTAFKPVLVDEGRKV 121
Query: 796 EDYV----------HRVGRTGR-AGRKGCAITFISEEDAKYSP 827
R GR GR R G + + +
Sbjct: 122 AIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAH 164
|
| >d1ij5a_ a.39.1.9 (A:) Cbp40 (plasmodial specific CaII-binding protein LAV1-2) {Physarum polycephalum [TaxId: 5791]} Length = 321 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: EF Hand-like superfamily: EF-hand family: Cbp40 (plasmodial specific CaII-binding protein LAV1-2) domain: Cbp40 (plasmodial specific CaII-binding protein LAV1-2) species: Physarum polycephalum [TaxId: 5791]
Score = 40.8 bits (94), Expect = 7e-04
Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 6/133 (4%)
Query: 24 SEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRDREKEREEKRERAREKEREREKRD 83
++RE + + ++ ++K H + DRDR E + +K + + K E +++
Sbjct: 8 TQREANVKKVHENLEELQKKLDHTSFAHKEDRDR---LEAQIAQKEQEQKAKLAEYDQKV 64
Query: 84 REREDRERERERERERRERDREREKRERERDRDKEKDRERKSRDREKRRKVESDDSDEDK 143
+ D ERERE D E++R KD E + + R + S+ED
Sbjct: 65 QNEFDARERAEREREAARGD---AAAEKQRLASLLKDLEDDASGYNRLRPSKPMLSEEDT 121
Query: 144 DRDRKRRRRHDDD 156
+ R+
Sbjct: 122 NILRQLFLSSAVS 134
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Score = 38.5 bits (88), Expect = 0.001
Identities = 24/160 (15%), Positives = 50/160 (31%), Gaps = 22/160 (13%)
Query: 500 VIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSD 559
++ G + G+GKT F+ +L + L++APTR ++ ++
Sbjct: 3 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR-------RLRTLVLAPTRVVLSEMKEA 55
Query: 560 IRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVT 619
+ +G I + + T +
Sbjct: 56 FHGLDVKFHTQAFSAHG-----------SGREVIDAMCHATLTYRMLEP----TRVVNWE 100
Query: 620 YLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFP 659
++MDEA + + + + T+L +AT P
Sbjct: 101 VIIMDEAHFLDPASIAARGWAAHRARANESATILMTATPP 140
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1112 | |||
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 100.0 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 100.0 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 100.0 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 100.0 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 100.0 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 100.0 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 100.0 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 100.0 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 99.98 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.95 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.95 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.95 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.94 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.93 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 99.93 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.92 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.91 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.9 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.9 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 99.89 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 99.89 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.85 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 99.84 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.84 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.83 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 99.78 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.78 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.77 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.7 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.67 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.67 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.65 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 99.65 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.63 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.59 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.51 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 99.43 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 99.38 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.37 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 99.3 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 99.15 | |
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 99.07 | |
| d1tf5a3 | 273 | Translocation ATPase SecA, nucleotide-binding doma | 98.75 | |
| d1nkta3 | 288 | Translocation ATPase SecA, nucleotide-binding doma | 98.65 | |
| d1nkta4 | 219 | Translocation ATPase SecA, nucleotide-binding doma | 98.5 | |
| d1k1ga_ | 122 | RNA splicing factor 1 {Human (Homo sapiens) [TaxId | 98.08 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 97.83 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 97.01 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 96.72 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 96.67 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 96.64 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 96.63 | |
| d2bl5a1 | 134 | Quaking protein A (Xqua) {African clawed frog (Xen | 96.58 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 96.53 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 96.11 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 96.07 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 95.97 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 95.63 | |
| d1x4na1 | 79 | Far upstream binding element, FBP {Mouse (Mus musc | 95.1 | |
| d1zzka1 | 75 | HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]} | 94.99 | |
| d1t5la1 | 413 | Nucleotide excision repair enzyme UvrB {Bacillus c | 94.93 | |
| d2ctea1 | 81 | Vigilin {Human (Homo sapiens) [TaxId: 9606]} | 94.67 | |
| d1xx6a1 | 141 | Thymidine kinase, TK1, N-terminal domain {Clostrid | 94.61 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 94.57 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 94.5 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 94.48 | |
| d2ctka1 | 91 | Vigilin {Human (Homo sapiens) [TaxId: 9606]} | 94.38 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 94.28 | |
| d2ctla1 | 84 | Vigilin {Human (Homo sapiens) [TaxId: 9606]} | 94.26 | |
| d2ctma1 | 81 | Vigilin {Human (Homo sapiens) [TaxId: 9606]} | 94.18 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 94.06 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 93.63 | |
| d1xbta1 | 133 | Thymidine kinase, TK1, N-terminal domain {Human (H | 93.48 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 93.14 | |
| d1j4wa2 | 71 | Far upstream binding element, FBP {Human (Homo sap | 93.07 | |
| d1dtja_ | 74 | Neuro-oncological ventral antigen 2, nova-2, KH3 { | 92.76 | |
| d1x4ma1 | 81 | Far upstream binding element, FBP {Mouse (Mus musc | 92.47 | |
| d2axya1 | 71 | Poly(RC)-binding protein 2 {Human (Homo sapiens) [ | 92.32 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 92.29 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 92.27 | |
| d1we8a_ | 104 | Tudor and KH domain containing protein, Tdrkh {Mou | 92.25 | |
| d1c4oa1 | 408 | Nucleotide excision repair enzyme UvrB {Thermus th | 91.95 | |
| d1j4wa1 | 74 | Far upstream binding element, FBP {Human (Homo sap | 91.5 | |
| d1wvna1 | 70 | Poly(RC)-binding protein 1 {Human (Homo sapiens) [ | 91.31 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 91.14 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 91.08 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 91.0 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 90.93 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 90.65 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 90.58 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 90.42 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 89.88 | |
| d1g5ta_ | 157 | ATP:corrinoid adenosyltransferase CobA {Salmonella | 89.57 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 89.0 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 89.0 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 88.58 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 87.59 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 87.38 | |
| d1viga_ | 71 | Vigilin {Human (Homo sapiens) [TaxId: 9606]} | 87.03 | |
| d2ba0a3 | 84 | Exosome complex RNA-binding protein 1, ECR1 {Archa | 86.99 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 86.79 | |
| d2cpqa1 | 78 | Fragile X mental retardation syndrome related prot | 86.42 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 85.74 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 85.37 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 85.08 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 84.05 | |
| d2z0sa2 | 87 | Exosome complex RNA-binding protein 1, ECR1 {Aerop | 84.03 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 82.93 | |
| d2ctja1 | 82 | Vigilin {Human (Homo sapiens) [TaxId: 9606]} | 82.73 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 81.64 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 81.26 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 81.17 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 80.9 |
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.2e-40 Score=348.02 Aligned_cols=209 Identities=34% Similarity=0.588 Sum_probs=195.7
Q ss_pred CCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCc
Q 001261 463 PKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPV 542 (1112)
Q Consensus 463 p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~ 542 (1112)
.....+|.+++|++.++++|..+||..|||+|.++||.++.|+|+|++|+||||||++|++|+++++... ...++
T Consensus 13 ~~~~~sF~~l~L~~~l~~~L~~~g~~~pt~IQ~~aIp~il~g~dvi~~a~TGSGKTlayllPil~~l~~~-----~~~~~ 87 (222)
T d2j0sa1 13 VDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ-----VRETQ 87 (222)
T ss_dssp CCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT-----SCSCC
T ss_pred CCCCCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCeEEEcCcchhhhhhhccccccccccc-----ccCce
Confidence 3455689999999999999999999999999999999999999999999999999999999999987653 35789
Q ss_pred EEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEE
Q 001261 543 GLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLV 622 (1112)
Q Consensus 543 ~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vV 622 (1112)
+||++||++||.|++..+..++...++++.+++||.....+...+..+++|||+|||+|.+++.... ..++++.+||
T Consensus 88 ~lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~g~~~~~~~~~~l~~~~~Ilv~TPgrl~~~~~~~~---~~~~~l~~lV 164 (222)
T d2j0sa1 88 ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRS---LRTRAIKMLV 164 (222)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTS---SCCTTCCEEE
T ss_pred eEEecchHHHHHHHHHHHHHHhCccceeEEEEeecccchhhHHHhccCCeEEeCCCCcHHhcccccc---cccccceeee
Confidence 9999999999999999999999999999999999999999999999999999999999999886643 5788999999
Q ss_pred eccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEc
Q 001261 623 MDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVG 679 (1112)
Q Consensus 623 iDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~ 679 (1112)
|||||+|+++||...+..|+..++.++|+++||||+|..+..++..++++|+.|.++
T Consensus 165 lDEaD~ll~~~f~~~i~~I~~~l~~~~Q~ilfSAT~~~~v~~l~~~~l~~Pv~I~V~ 221 (222)
T d2j0sa1 165 LDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVK 221 (222)
T ss_dssp EETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCC
T ss_pred ecchhHhhhcCcHHHHHHHHHhCCCCCEEEEEEEeCCHHHHHHHHHHCCCCEEEEEe
Confidence 999999999999999999999999999999999999999999999999999988764
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.2e-38 Score=328.96 Aligned_cols=203 Identities=31% Similarity=0.583 Sum_probs=188.0
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEE
Q 001261 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545 (1112)
Q Consensus 466 i~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LI 545 (1112)
.++|++++|++.|+++|..+||..|||+|.++||.+++|+|+|++|+||||||++|++|++.++... ..++.+||
T Consensus 2 ~~~F~~l~L~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllP~l~~~~~~-----~~~~~~li 76 (206)
T d1veca_ 2 GNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK-----KDNIQAMV 76 (206)
T ss_dssp CSSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT-----SCSCCEEE
T ss_pred CCChhccCcCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEeeccCccccccccccchhhccccc-----ccCcceEE
Confidence 3689999999999999999999999999999999999999999999999999999999999987653 45789999
Q ss_pred EccchhHHHHHHHHHHHHhhhc-CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEec
Q 001261 546 MAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (1112)
Q Consensus 546 l~PtreLa~Q~~~~~~~~~~~~-~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViD 624 (1112)
++||++||.|++..+..+.... ++.+..++|+.....+...+..+++|||+|||+|.+++.... ..++++.+||||
T Consensus 77 l~pt~el~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ivv~TPgrl~~~~~~~~---~~~~~l~~lVlD 153 (206)
T d1veca_ 77 IVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGV---AKVDHVQMIVLD 153 (206)
T ss_dssp ECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC---SCCTTCCEEEEE
T ss_pred EeecchhhHHHHHHHHHHhhcccCcccccccCCccHHHHHHHHHhccCeEEeCCccccccccchh---ccccccceEEEe
Confidence 9999999999999999987654 567788889998988888889999999999999999887643 578899999999
Q ss_pred cchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEE
Q 001261 625 EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEI 676 (1112)
Q Consensus 625 Eah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i 676 (1112)
|||.|++++|...+..|+..+++++|+++||||+|..+..+++.++++|+.|
T Consensus 154 EaD~ll~~~f~~~i~~I~~~~~~~~Q~~l~SAT~~~~v~~l~~~~l~~P~~I 205 (206)
T d1veca_ 154 EADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp THHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred ccccccccchHHHHHHHHHhCCCCCEEEEEEecCCHHHHHHHHHHCCCCEEE
Confidence 9999999999999999999999999999999999999999999999999865
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.9e-38 Score=332.62 Aligned_cols=211 Identities=32% Similarity=0.556 Sum_probs=191.1
Q ss_pred CCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCC
Q 001261 461 DVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDG 540 (1112)
Q Consensus 461 ~~p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~ 540 (1112)
+.|.|+.+|.+++|++.++++|.++||..|||+|.++||.++.|+|+|++|+||||||++|++|+++++... ..+
T Consensus 6 ~~~e~i~sF~~l~L~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllp~l~~i~~~-----~~~ 80 (218)
T d2g9na1 6 NWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD-----LKA 80 (218)
T ss_dssp CCCCCCCCGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----CCS
T ss_pred CCCCccCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcccchhhhhhhhhhhhheeccc-----ccC
Confidence 357899999999999999999999999999999999999999999999999999999999999999998542 368
Q ss_pred CcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHH-hcCCeEEEeCchHHHHHHHhcCCcccccCCce
Q 001261 541 PVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISEL-KRGTEIVVCTPGRMIDILCTSGGKITNLRRVT 619 (1112)
Q Consensus 541 ~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l-~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~ 619 (1112)
+++||++||++||.|++..+..++..+++.+.+++++.....+.... ..+++|||+||++|.+++.... ..++++.
T Consensus 81 ~~alil~Pt~eL~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvV~TP~rl~~~l~~~~---~~~~~l~ 157 (218)
T d2g9na1 81 TQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRY---LSPKYIK 157 (218)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHTTTTCCEEEECC--CCCSTTTSSSSCCCSEEEECHHHHHHHHHTTS---SCSTTCC
T ss_pred ccEEEEcccchhhhhHHHHHhhhccccceeEEeeecccchhHHHHHHhcCCCEEEEeCChhHHHHHhcCC---cccccce
Confidence 99999999999999999999999999999999998887665554333 3468999999999999997643 5788999
Q ss_pred EEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEc
Q 001261 620 YLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVG 679 (1112)
Q Consensus 620 ~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~ 679 (1112)
+|||||||+|++.+|...+..|+..++.++|+++||||+|..+..+++.++.+|+.|.+.
T Consensus 158 ~lVlDEaD~ll~~~f~~~~~~Il~~~~~~~Q~il~SAT~~~~v~~~~~~~l~~pv~i~v~ 217 (218)
T d2g9na1 158 MFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVK 217 (218)
T ss_dssp EEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEEECC
T ss_pred EEEeeecchhhcCchHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHCCCCEEEEEe
Confidence 999999999999999999999999999999999999999999999999999999988764
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=9.7e-38 Score=329.08 Aligned_cols=211 Identities=31% Similarity=0.518 Sum_probs=187.0
Q ss_pred cCCCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCC
Q 001261 459 GKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAG 538 (1112)
Q Consensus 459 ~~~~p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~ 538 (1112)
|.+.|.++.+|.+++|++.++++|.++||..|||+|..+||.++.|+|+|++++||||||++|++|++.++... .
T Consensus 2 ~~~~~~~~~sF~~l~l~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~a~~lp~i~~l~~~-----~ 76 (212)
T d1qdea_ 2 QTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----V 76 (212)
T ss_dssp CBSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----C
T ss_pred CCCCcccccChhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEeecccccchhhhhHhhhHhhhhcc-----C
Confidence 34678999999999999999999999999999999999999999999999999999999999999999997543 4
Q ss_pred CCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCc
Q 001261 539 DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRV 618 (1112)
Q Consensus 539 ~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i 618 (1112)
.+|++||++||++|+.|++..+..+.....+.+.+++++.....+...++ +++|+|+||++|..++.... .+|.++
T Consensus 77 ~~~~~lil~pt~el~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~IvI~TP~~l~~~~~~~~---~~l~~l 152 (212)
T d1qdea_ 77 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRR---FRTDKI 152 (212)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CT-TCSEEEECHHHHHHHHHTTS---SCCTTC
T ss_pred CCcceEEEcccHHHhhhhhhhhcccccccccceeeEeeccchhHHHHHhc-CCcEEEECCCccccccccCc---eecCcc
Confidence 68999999999999999999999999999999999999988887776654 68999999999999887653 578999
Q ss_pred eEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEE
Q 001261 619 TYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQV 678 (1112)
Q Consensus 619 ~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i 678 (1112)
.+|||||||.|++++|...+..|+..+++.+|+++||||+|+.+..+++.++.+|+.|.+
T Consensus 153 ~~lVlDEad~lld~~f~~~v~~I~~~~~~~~Q~vl~SAT~~~~v~~l~~~~l~~Pv~i~v 212 (212)
T d1qdea_ 153 KMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILV 212 (212)
T ss_dssp CEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC-
T ss_pred eEEeehhhhhhcccchHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHHCCCCEEEeC
Confidence 999999999999999999999999999999999999999999999999999999987753
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Probab=100.00 E-value=2.3e-37 Score=332.25 Aligned_cols=216 Identities=40% Similarity=0.674 Sum_probs=197.2
Q ss_pred CCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCC----CC
Q 001261 461 DVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPP----VA 536 (1112)
Q Consensus 461 ~~p~pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~----~~ 536 (1112)
+.|.++.+|.+++|++.++++|..+||..|||+|..+||.++.|+|++++|+||||||++|++|+++++..... ..
T Consensus 15 ~~~~~~~~F~~l~l~~~l~~~L~~~g~~~pt~iQ~~~ip~il~g~dvvi~a~TGsGKTlayllp~l~~l~~~~~~~~~~~ 94 (238)
T d1wrba1 15 SATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYS 94 (238)
T ss_dssp SCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------
T ss_pred CCCCccCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHhhhhhCCCCEEEECCCCCCcceeeHHHHHHHHHhccccccccc
Confidence 45778999999999999999999999999999999999999999999999999999999999999999875432 22
Q ss_pred CCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccC
Q 001261 537 AGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLR 616 (1112)
Q Consensus 537 ~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~ 616 (1112)
...+|++|||+||++||.|++..+..++...++++..++|+.....+...+..+++||||||++|.+++..+. ..|.
T Consensus 95 ~~~~~~alil~pt~el~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivV~TP~~l~~~~~~~~---~~l~ 171 (238)
T d1wrba1 95 KTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNK---ISLE 171 (238)
T ss_dssp CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTS---BCCT
T ss_pred CCCCceEEEeccchhhhcchheeeeecccCCCcEEEEEeccchhhHHHhhcccCCceeecCHHHHHhHHccCc---eecc
Confidence 3457999999999999999999999999999999999999999998888889999999999999999987643 5688
Q ss_pred CceEEEeccchhhhccCChhHHHHHHHhcC----CCCcEEEEeccccHHHHHHHHHhcCCCeEEEEc
Q 001261 617 RVTYLVMDEADRMFDMGFEPQITRIVQNIR----PDRQTVLFSATFPRQVEILARKVLNKPVEIQVG 679 (1112)
Q Consensus 617 ~i~~vViDEah~~~~~gf~~~i~~il~~~~----~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~ 679 (1112)
++.++||||||+|++.+|..++..|+..++ .++|+|+||||+|..+..+++.++++|+.|.+|
T Consensus 172 ~v~~lViDEaD~ll~~~f~~~i~~Il~~~~~~~~~~~Q~il~SAT~~~~v~~l~~~~~~~p~~i~vg 238 (238)
T d1wrba1 172 FCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVG 238 (238)
T ss_dssp TCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC
T ss_pred ccceeeeehhhhhhhhccHHHHHHHHHHhcCCCCCCCEEEEEeeeCCHHHHHHHHHHCCCCEEEEeC
Confidence 999999999999999999999999998764 257999999999999999999999999988875
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.5e-37 Score=323.93 Aligned_cols=204 Identities=29% Similarity=0.522 Sum_probs=185.7
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEE
Q 001261 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (1112)
Q Consensus 467 ~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl 546 (1112)
++|.+++|++.++++|.++||..|||+|.++||.++.|+|+|++|+||||||++|++|+++.+... ..++++||+
T Consensus 1 s~F~dl~L~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvl~~A~TGsGKTla~~lp~l~~~~~~-----~~~~~~lil 75 (207)
T d1t6na_ 1 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQVSVLVM 75 (207)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC-----TTCCCEEEE
T ss_pred CCccccCcCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCeEEEeccccccccccccceeeeeccc-----CCCceEEEE
Confidence 479999999999999999999999999999999999999999999999999999999999886542 357899999
Q ss_pred ccchhHHHHHHHHHHHHhhhcC-ceEEEEeCCCChHHHHHHHh-cCCeEEEeCchHHHHHHHhcCCcccccCCceEEEec
Q 001261 547 APTRELVQQIHSDIRKFAKVMG-VRCVPVYGGSGVAQQISELK-RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (1112)
Q Consensus 547 ~PtreLa~Q~~~~~~~~~~~~~-i~~~~~~gg~~~~~~~~~l~-~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViD 624 (1112)
+||++||.|++..+..++..++ +.+.+++||.....+...+. .+++||||||++|.+++.... .+|+++.+||||
T Consensus 76 ~PtreL~~qi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ilI~TP~rl~~~~~~~~---~~l~~l~~lVlD 152 (207)
T d1t6na_ 76 CHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS---LNLKHIKHFILD 152 (207)
T ss_dssp CSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTS---SCCTTCCEEEEE
T ss_pred eccchhhHHHHHHHHHHHhhCCCceeEEEeccccHHHHHHHHHhcCCCEEEeCcchhhhhccCCc---eeccccceeehh
Confidence 9999999999999999988764 67788899999888877764 578999999999999987643 578999999999
Q ss_pred cchhhhc-cCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEE
Q 001261 625 EADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQV 678 (1112)
Q Consensus 625 Eah~~~~-~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i 678 (1112)
|||+|++ .+|...+..|+..++.++|+++||||+|..+..+++.++++|+.|.+
T Consensus 153 EaD~ll~~~~~~~~i~~I~~~~~~~~Q~il~SAT~~~~v~~l~~~~l~~P~~I~V 207 (207)
T d1t6na_ 153 ECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 207 (207)
T ss_dssp SHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEEC
T ss_pred hhhhhhhcCCcHHHHHHHHHhCCCCCEEEEEeeeCCHHHHHHHHHHCCCCEEEeC
Confidence 9999997 48999999999999999999999999999999999999999988764
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1e-35 Score=313.36 Aligned_cols=203 Identities=33% Similarity=0.643 Sum_probs=187.8
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCC-CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEE
Q 001261 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGR-DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGL 544 (1112)
Q Consensus 466 i~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~-dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~L 544 (1112)
..+|.+++|++.|+++|.++||..|||+|.++||.++.|+ |+|++++||||||++|++|++.++.. ..++++|
T Consensus 3 ~msf~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~~d~iv~a~TGsGKT~~~~l~~~~~~~~------~~~~~~l 76 (208)
T d1hv8a1 3 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE------NNGIEAI 76 (208)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS------SSSCCEE
T ss_pred ccCHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeeeechhcccccceeeccccccccc------ccCcceE
Confidence 4589999999999999999999999999999999999985 99999999999999999999987543 4689999
Q ss_pred EEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEec
Q 001261 545 IMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (1112)
Q Consensus 545 Il~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViD 624 (1112)
|||||++||.|++..+..++...++.+.+++|+.....+...+. +++||||||++|.+++.... .+++++.+||||
T Consensus 77 il~pt~~l~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~-~~~IlV~TP~~l~~~l~~~~---~~~~~l~~lViD 152 (208)
T d1hv8a1 77 ILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGT---LNLKNVKYFILD 152 (208)
T ss_dssp EECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTC---SCTTSCCEEEEE
T ss_pred EEeeccccchhhhhhhhhhcccCCeEEEEeeCCCChHHHHHhcC-CCCEEEEChHHHHHHHHcCC---CCcccCcEEEEE
Confidence 99999999999999999999999999999999999988877664 69999999999999987643 578999999999
Q ss_pred cchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEE
Q 001261 625 EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQV 678 (1112)
Q Consensus 625 Eah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i 678 (1112)
|||+|++.+|...+..|+..+++++|+|+||||+|+.+..+++.++++|..|.+
T Consensus 153 Ead~l~~~~~~~~i~~I~~~~~~~~Q~i~~SAT~~~~v~~~~~~~l~~~~~I~~ 206 (208)
T d1hv8a1 153 EADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKA 206 (208)
T ss_dssp THHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEEC
T ss_pred ChHHhhcCCChHHHHHHHHhCCCCCeEEEEEccCCHHHHHHHHHHCCCCeEEEE
Confidence 999999999999999999999999999999999999999999999999987754
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.2e-35 Score=310.53 Aligned_cols=205 Identities=38% Similarity=0.622 Sum_probs=192.6
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEE
Q 001261 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (1112)
Q Consensus 467 ~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl 546 (1112)
.+|.+++|++.++++|.++||..|||+|.++||.++.|+|+|++|+||||||++|++|++.++... ..++.++++
T Consensus 1 ~sF~~l~L~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~dvi~~a~tGsGKTlay~lp~i~~~~~~-----~~~~~~~~~ 75 (206)
T d1s2ma1 1 NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK-----LNKIQALIM 75 (206)
T ss_dssp CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT-----SCSCCEEEE
T ss_pred CChHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEecCCcchhhhhhccccccccccc-----cccccceee
Confidence 379999999999999999999999999999999999999999999999999999999999987653 347889999
Q ss_pred ccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccc
Q 001261 547 APTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEA 626 (1112)
Q Consensus 547 ~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEa 626 (1112)
+|+.+++.|.+..+..+....++++.+++|+.....+...+..+++|||+||++|.+++.... .+|.++.+||||||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~---~~l~~l~~lV~DEa 152 (206)
T d1s2ma1 76 VPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKV---ADLSDCSLFIMDEA 152 (206)
T ss_dssp CSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC---SCCTTCCEEEEESH
T ss_pred ccchhhhhhhhhhhhhcccccCeeEEeecCccchhhHHHHhcccceEEEECCcccccccccce---eecccceEEEeech
Confidence 999999999999999999999999999999999999999999999999999999999997643 57899999999999
Q ss_pred hhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEEc
Q 001261 627 DRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVG 679 (1112)
Q Consensus 627 h~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i~ 679 (1112)
|.|++.+|...+..|+..+++.+|+|+||||+|+.+..++..++.+|+.|.++
T Consensus 153 D~l~~~~f~~~v~~I~~~l~~~~Q~il~SATl~~~v~~~~~~~l~~P~~I~~~ 205 (206)
T d1s2ma1 153 DKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLM 205 (206)
T ss_dssp HHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCC
T ss_pred hhhhhhhhHHHHHHHHHhCCCCCEEEEEEEeCCHHHHHHHHHHCCCCEEEEee
Confidence 99999999999999999999999999999999999999999999999887654
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=2.2e-33 Score=296.24 Aligned_cols=204 Identities=31% Similarity=0.537 Sum_probs=183.0
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEE
Q 001261 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (1112)
Q Consensus 467 ~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl 546 (1112)
++|++++|++.|++.|+++||..|||+|.+|||.++.|+|+|++|+||||||++|++|+++.+... ...+.++++
T Consensus 1 t~F~~l~L~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvii~a~TGSGKTlayllp~l~~~~~~-----~~~~~~~~~ 75 (209)
T d1q0ua_ 1 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE-----RAEVQAVIT 75 (209)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT-----SCSCCEEEE
T ss_pred CccccCCcCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCeEeecccccccceeeeeeeccccccc-----ccccccccc
Confidence 479999999999999999999999999999999999999999999999999999999999887653 346788999
Q ss_pred ccchhHHHHHHHHHHHHhhhc----CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEE
Q 001261 547 APTRELVQQIHSDIRKFAKVM----GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLV 622 (1112)
Q Consensus 547 ~PtreLa~Q~~~~~~~~~~~~----~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vV 622 (1112)
+|+..++.+.+..+..+.... ...+.++.++.....+...+..+++|+|+||++|..++.... ..+.++.++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~TP~~l~~~~~~~~---~~~~~l~~lV 152 (209)
T d1q0ua_ 76 APTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQA---LDVHTAHILV 152 (209)
T ss_dssp CSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTC---CCGGGCCEEE
T ss_pred ccccchhHHHHHHHHhhhccccccccccccccccchhhHHHHHHhccCceEEEecCchhhhhhhhhc---cccccceEEE
Confidence 999999999998888766544 456777788887777766677889999999999999887643 4678899999
Q ss_pred eccchhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHHHhcCCCeEEEE
Q 001261 623 MDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQV 678 (1112)
Q Consensus 623 iDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~~i~i 678 (1112)
|||||.|++++|...+..|+..+++++|+++||||+|+.+..+++.++++|+.|.+
T Consensus 153 iDEad~ll~~~f~~~v~~I~~~~~~~~Q~il~SATl~~~v~~l~~~~l~~p~~i~V 208 (209)
T d1q0ua_ 153 VDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHV 208 (209)
T ss_dssp ECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEEC
T ss_pred EeecccccccccHHHHHHHHHHCCCCCEEEEEEccCCHHHHHHHHHHCCCCEEEEe
Confidence 99999999999999999999999999999999999999999999999999988764
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=99.98 E-value=4.5e-33 Score=311.64 Aligned_cols=272 Identities=20% Similarity=0.210 Sum_probs=188.8
Q ss_pred HHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCCh
Q 001261 501 IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGV 580 (1112)
Q Consensus 501 il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~ 580 (1112)
+..|+++|+.|+||||||++|+++++..... .++++|||+||++||.|+++.+..+. +.+.....+
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~-------~~~~~lvi~Ptr~La~q~~~~l~~~~----~~~~~~~~~--- 71 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAIK-------RGLRTLILAPTRVVAAEMEEALRGLP----IRYQTPAIR--- 71 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-------HTCCEEEEESSHHHHHHHHHHTTTSC----CBCCC-------
T ss_pred hhcCCcEEEEECCCCCHHHHHHHHHHHHHHh-------cCCEEEEEccHHHHHHHHHHHHhcCC----cceeeeEEe---
Confidence 4578999999999999999999898877654 26789999999999999988776542 221111110
Q ss_pred HHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHH--hcCCCCcEEEEeccc
Q 001261 581 AQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ--NIRPDRQTVLFSATF 658 (1112)
Q Consensus 581 ~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~--~~~~~~q~il~SAT~ 658 (1112)
........|+++|++.|..++... ..+.++++|||||||++..+++. +..++. ..++..+++++|||+
T Consensus 72 ----~~~~~~~~i~~~t~~~l~~~~~~~----~~~~~~~~vViDE~H~~~~~~~~--~~~~l~~~~~~~~~~~v~~SAT~ 141 (305)
T d2bmfa2 72 ----AEHTGREIVDLMCHATFTMRLLSP----IRVPNYNLIIMDEAHFTDPASIA--ARGYISTRVEMGEAAGIFMTATP 141 (305)
T ss_dssp --------CCCSEEEEEHHHHHHHHTSS----SCCCCCSEEEEESTTCCSHHHHH--HHHHHHHHHHHTSCEEEEECSSC
T ss_pred ----ecccCccccccCCcHHHHHHHhcC----ccccceeEEEeeeeeecchhhHH--HHHHHHHhhccccceEEEeecCC
Confidence 112345789999999887766432 35678999999999998765432 222222 224678999999998
Q ss_pred cHHHHHHHHHhcCCCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcC
Q 001261 659 PRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHG 738 (1112)
Q Consensus 659 ~~~~~~l~~~~~~~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g 738 (1112)
|.....+. ....|+... ........+.. .+..+. ...+++||||+++..++.++..|...+
T Consensus 142 ~~~~~~~~--~~~~~~~~~--------------~~~~~~~~~~~-~~~~~~--~~~~~~lvf~~~~~~~~~l~~~L~~~~ 202 (305)
T d2bmfa2 142 PGSRDPFP--QSNAPIMDE--------------EREIPERSWNS-GHEWVT--DFKGKTVWFVPSIKAGNDIAACLRKNG 202 (305)
T ss_dssp TTCCCSSC--CCSSCEEEE--------------ECCCCCSCCSS-CCHHHH--SSCSCEEEECSCHHHHHHHHHHHHHHT
T ss_pred Ccceeeec--ccCCcceEE--------------EEeccHHHHHH-HHHHHH--hhCCCEEEEeccHHHHHHHHHHHHhCC
Confidence 75321100 000111110 00001111101 111122 236799999999999999999999999
Q ss_pred CCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEE----------EeCC----------CCCHhHH
Q 001261 739 YPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVI----------NFDA----------PNHYEDY 798 (1112)
Q Consensus 739 ~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI----------~~d~----------p~s~~~y 798 (1112)
+.+..+||++.+.. ...|.+|...+||||+++++|+|++ +.+|| +|+. |.|...|
T Consensus 203 ~~~~~l~~~~~~~~----~~~~~~~~~~~lvaT~~~~~G~~~~-~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 277 (305)
T d2bmfa2 203 KKVIQLSRKTFDSE----YIKTRTNDWDFVVTTDISEMGANFK-AERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSA 277 (305)
T ss_dssp CCCEECCTTCHHHH----GGGGGTSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHH
T ss_pred CCEEEeCCcChHHH----HhhhhccchhhhhhhHHHHhcCCCC-ccEEEEcCCceeeeEecCCCCceEEeccccCCHHHH
Confidence 99999999997544 4578999999999999999999994 55554 3443 5688999
Q ss_pred HHHhcccCCCCCccEEEEEecC
Q 001261 799 VHRVGRTGRAGRKGCAITFISE 820 (1112)
Q Consensus 799 ~QriGR~gR~G~~g~~i~~~~~ 820 (1112)
+||+||+||.|+.+..+++|..
T Consensus 278 ~Qr~GR~GR~~~~~~~~~~~~~ 299 (305)
T d2bmfa2 278 AQRRGRVGRNPKNENDQYIYMG 299 (305)
T ss_dssp HHHHTTSSCSSSCCCEEEEECS
T ss_pred hhhhcCcCcCCCCceEEEEECC
Confidence 9999999999988877777654
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=2.5e-28 Score=245.07 Aligned_cols=159 Identities=31% Similarity=0.554 Sum_probs=140.3
Q ss_pred ccEEEEecc-cchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCcc
Q 001261 688 ITQLVEVRP-ESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCN 766 (1112)
Q Consensus 688 i~q~~~~~~-~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~ 766 (1112)
|.|++..+. .+.|+..|..++.. ....++||||+++..++.|+..|...++.+..+||+|++.+|..+++.|+.|..+
T Consensus 1 I~q~~~~v~~~e~K~~~L~~ll~~-~~~~k~iIF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~l~~f~~~~~~ 79 (162)
T d1fuka_ 1 IKQFYVNVEEEEYKYECLTDLYDS-ISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR 79 (162)
T ss_dssp CEEEEEEEESGGGHHHHHHHHHHH-TTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CEEEEEEeCCcHHHHHHHHHHHHh-CCCCcEEEEEEEEchHHHHHHHHhhcCceEEEeccCCchhhHHHHHHHHhhcccc
Confidence 456666554 45688888888765 4567999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhHHH
Q 001261 767 LLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKA 846 (1112)
Q Consensus 767 VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~ 846 (1112)
|||||+++++|||+++|++|||||+|+++..|+||+||+||.|+.|.|++|+++.+...+..|.+.+......+|.++..
T Consensus 80 iLv~Tdv~~rGiDi~~v~~VI~~d~P~~~~~yihR~GR~gR~g~~g~~i~~~~~~d~~~~~~i~~~~~~~~~~ip~~~~~ 159 (162)
T d1fuka_ 80 ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIAT 159 (162)
T ss_dssp EEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSCCTT
T ss_pred eeeccccccccccCCCceEEEEeccchhHHHHHhhccccccCCCccEEEEEcCHHHHHHHHHHHHHHcCcCCCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888888887654
Q ss_pred H
Q 001261 847 L 847 (1112)
Q Consensus 847 ~ 847 (1112)
+
T Consensus 160 l 160 (162)
T d1fuka_ 160 L 160 (162)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=6.5e-28 Score=243.30 Aligned_cols=159 Identities=33% Similarity=0.554 Sum_probs=145.4
Q ss_pred ccCCccEEEEeccc-chhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhc
Q 001261 684 VNKDITQLVEVRPE-SDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKS 762 (1112)
Q Consensus 684 ~~~~i~q~~~~~~~-~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~ 762 (1112)
...+|.|++..++. ..|+..|..+|... ...++||||+++..|+.++..|...|+.+..+||++++.+|..+++.|++
T Consensus 4 tl~~i~q~~v~v~~~~~K~~~L~~ll~~~-~~~k~iiF~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~fk~ 82 (168)
T d2j0sa2 4 TLEGIKQFFVAVEREEWKFDTLCDLYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS 82 (168)
T ss_dssp SCTTEEEEEEEESSTTHHHHHHHHHHHHH-TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEEecChHHHHHHHHHHHHhC-CCCceEEEeeeHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHhc
Confidence 34678888776655 56999999888664 56799999999999999999999999999999999999999999999999
Q ss_pred CCccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhccCCCCh
Q 001261 763 NVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPD 842 (1112)
Q Consensus 763 g~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp~ 842 (1112)
|..+|||||+++++|||+|++++|||||+|+++..|+||+||+||.|+.|.||+|+++.+...+..|.+.+....+.+|.
T Consensus 83 g~~~iLv~Td~~~rGiDi~~v~~VIn~d~P~~~~~yihR~GR~gR~g~~G~~i~~~~~~d~~~~~~i~~~~~~~i~e~p~ 162 (168)
T d2j0sa2 83 GASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPM 162 (168)
T ss_dssp TSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCS
T ss_pred CCccEEeccchhcccccccCcceEEEecCCcCHHHHHhhhccccccCCCcEEEEEECHHHHHHHHHHHHHHcCcCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999998888888888776666775
Q ss_pred h
Q 001261 843 D 843 (1112)
Q Consensus 843 ~ 843 (1112)
.
T Consensus 163 ~ 163 (168)
T d2j0sa2 163 N 163 (168)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.6e-27 Score=242.00 Aligned_cols=160 Identities=28% Similarity=0.502 Sum_probs=149.6
Q ss_pred ccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcC
Q 001261 684 VNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN 763 (1112)
Q Consensus 684 ~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g 763 (1112)
....|.|++.+++...|+..|..+|... ..+++||||+++..|+.|+..|...|+.+..+||+|++.+|..++..|++|
T Consensus 3 tl~~i~q~yi~v~~~~K~~~L~~ll~~~-~~~k~iVF~~~~~~~~~l~~~L~~~g~~~~~~h~~~~~~~r~~~~~~f~~~ 81 (171)
T d1s2ma2 3 TLKGITQYYAFVEERQKLHCLNTLFSKL-QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQG 81 (171)
T ss_dssp BCTTEEEEEEECCGGGHHHHHHHHHHHS-CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CccceEEEEEEcCHHHHHHHHHHHHHhC-CCCceEEEEeeeehhhHhHHhhhcccccccccccccchhhhhhhhhhcccC
Confidence 3457889999998899999999999764 567999999999999999999999999999999999999999999999999
Q ss_pred CccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChh
Q 001261 764 VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDD 843 (1112)
Q Consensus 764 ~~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp~~ 843 (1112)
...|||||+++++|||+|++++|||||+|+++..|+||+||+||.|+.|.||+|+++.+...+..|.+.+......+|..
T Consensus 82 ~~~ilv~Td~~~~Gid~~~v~~VI~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~v~~~e~~~~~~i~~~l~~~~~~~p~~ 161 (171)
T d1s2ma2 82 KVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPAT 161 (171)
T ss_dssp SSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSS
T ss_pred ccccccchhHhhhccccceeEEEEecCCcchHHHHHHHhhhcccCCCccEEEEEeCHHHHHHHHHHHHHHCCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988877778865
Q ss_pred H
Q 001261 844 L 844 (1112)
Q Consensus 844 l 844 (1112)
+
T Consensus 162 ~ 162 (171)
T d1s2ma2 162 I 162 (171)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.94 E-value=1e-26 Score=232.09 Aligned_cols=149 Identities=37% Similarity=0.552 Sum_probs=139.4
Q ss_pred cCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCC
Q 001261 685 NKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNV 764 (1112)
Q Consensus 685 ~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~ 764 (1112)
+.+|.|.+..++..+|+..|+.+|.. .++++||||+++..|+.|+..|...|+.+..+||++++.+|..++..|++|.
T Consensus 1 n~nI~~~~i~v~~~~K~~~L~~ll~~--~~~k~IIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~~~ 78 (155)
T d1hv8a2 1 NANIEQSYVEVNENERFEALCRLLKN--KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKK 78 (155)
T ss_dssp SSSSEEEEEECCGGGHHHHHHHHHCS--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTS
T ss_pred CCCeEEEEEEeChHHHHHHHHHHHcc--CCCCEEEEECchHHHHHHHhhhcccccccccccccchhhhhhhhhhhhhccc
Confidence 35788999888889999999999875 3568999999999999999999999999999999999999999999999999
Q ss_pred ccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhh
Q 001261 765 CNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALEL 835 (1112)
Q Consensus 765 ~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~ 835 (1112)
..|||||+++++|||+|++++||+||+|+++..|+||+||+||.|+.|.||+|+++.|...+..|.+.++.
T Consensus 79 ~~ilv~T~~~~~Gid~~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~d~~~~~~i~~~~~~ 149 (155)
T d1hv8a2 79 IRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKL 149 (155)
T ss_dssp SSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTC
T ss_pred ceeeeehhHHhhhhhhccCcEEEEecCCCCHHHHHHHHHhcCcCCCCceEEEEEchHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999988888777777654
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=2.2e-26 Score=232.32 Aligned_cols=156 Identities=33% Similarity=0.609 Sum_probs=141.5
Q ss_pred ccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccE
Q 001261 688 ITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNL 767 (1112)
Q Consensus 688 i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~V 767 (1112)
+.|++......+|+..|+.+|... ..+++||||+++..++.|+..|...|+.|..+||+|++.+|..+++.|++|.++|
T Consensus 2 l~q~~v~~~~~~K~~~L~~ll~~~-~~~k~iIF~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~l~~F~~g~~~i 80 (168)
T d1t5ia_ 2 LQQYYVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRI 80 (168)
T ss_dssp CEEEEEECCGGGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSE
T ss_pred cEEEEEEeChHHHHHHHHHHHHhC-CCCeEEEEEeeeecchhhhhhhccccccccccccccchhhhhhhhhhhcccccee
Confidence 578888888899999999998764 5679999999999999999999999999999999999999999999999999999
Q ss_pred EEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCC-ccCchHHHHHHHhhccCCCChhH
Q 001261 768 LIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEE-DAKYSPDLVKALELSEQVVPDDL 844 (1112)
Q Consensus 768 LVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~-d~~~~~~i~~~l~~~~~~vp~~l 844 (1112)
||||+++++|||+|.+++||+|++|+++..|+||+||+||.|+.|.||+|+++. +...+..+.+.+......+|.++
T Consensus 81 Lv~T~~~~~Gid~~~~~~vi~~~~p~~~~~yiqr~GR~gR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~~~elp~~~ 158 (168)
T d1t5ia_ 81 LVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 158 (168)
T ss_dssp EEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC---
T ss_pred eeccccccchhhcccchhhhhhhcccchhhHhhhhhhcccCCCccEEEEEECchHHHHHHHHHHHHHcCCcccCCchh
Confidence 999999999999999999999999999999999999999999999999999875 45666777777877777788765
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=4.8e-25 Score=228.16 Aligned_cols=143 Identities=20% Similarity=0.344 Sum_probs=127.4
Q ss_pred cCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCC
Q 001261 685 NKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNV 764 (1112)
Q Consensus 685 ~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~ 764 (1112)
.++|.. .+.....++..|+.+|... ...++||||+|+..++.|+..|...|+.+..+||++++.+|..+++.|++|.
T Consensus 4 RpNi~y--~v~~~~~k~~~L~~~l~~~-~~~~~IIF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~ 80 (200)
T d1oywa3 4 RPNIRY--MLMEKFKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDD 80 (200)
T ss_dssp CTTEEE--EEEECSSHHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CCCcEE--EEEcCCcHHHHHHHHHHhc-CCCCEEEEEeeehhhHHhhhhhccCCceeEEecCCCcHHHHHHHHHHHhccc
Confidence 344543 3445567888888888763 4568999999999999999999999999999999999999999999999999
Q ss_pred ccEEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCchHHHH
Q 001261 765 CNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLV 830 (1112)
Q Consensus 765 ~~VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~ 830 (1112)
.+|||||+++++|||+|+|++||||++|.++.+|+||+||+||.|..|.|++|+++.+..++..++
T Consensus 81 ~~ilvaTd~~~~GiD~p~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~ai~~~~~~d~~~l~~~i 146 (200)
T d1oywa3 81 LQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 146 (200)
T ss_dssp CSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHH
T ss_pred ceEEEecchhhhccCCCCCCEEEECCCccchHHHHHHhhhhhcCCCCceEEEecCHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999987765555443
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.91 E-value=2.1e-25 Score=239.33 Aligned_cols=188 Identities=21% Similarity=0.197 Sum_probs=136.4
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc
Q 001261 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547 (1112)
Q Consensus 468 ~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~ 547 (1112)
.|.+.++...+.. +...++..|+++|..+|+.++.|+|++++||||+|||++|+++++..+.. +.++|||+
T Consensus 23 ~~~~~~~~~~~~~-~~~~~~~~p~~~Q~~~i~~~l~g~~~~i~apTGsGKT~~~~~~~~~~~~~--------~~rvliv~ 93 (237)
T d1gkub1 23 LFPEDFLLKEFVE-FFRKCVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALK--------GKRCYVIF 93 (237)
T ss_dssp CCTTHHHHHHHHH-HHHTTTCSCCHHHHHHHHHHHTTCCEECCCCBTSCSHHHHHHHHHHHHTT--------SCCEEEEE
T ss_pred cCccchhHHHHHH-HHHhccCCCCHHHHHHHHHHHCCCCEEEEecCCChHHHHHHHHHHHHHHh--------cCeEEEEe
Confidence 3444334444444 44567889999999999999999999999999999999999999876543 67899999
Q ss_pred cchhHHHHHHHHHHHHhhhcCceE----EEEeCCCChHHHHHHHh--cCCeEEEeCchHHHHHHHhcCCcccccCCceEE
Q 001261 548 PTRELVQQIHSDIRKFAKVMGVRC----VPVYGGSGVAQQISELK--RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYL 621 (1112)
Q Consensus 548 PtreLa~Q~~~~~~~~~~~~~i~~----~~~~gg~~~~~~~~~l~--~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~v 621 (1112)
||++|+.|+++.+++++..+++.+ ....++.........+. .+++|+|+||++|.+.+ ..+.++++|
T Consensus 94 Pt~~La~Q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ilv~Tp~~l~~~~-------~~~~~~~~v 166 (237)
T d1gkub1 94 PTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHY-------RELGHFDFI 166 (237)
T ss_dssp SCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCS-------TTSCCCSEE
T ss_pred ccHHHHHHHHHHHHHHHHHcCCceEEEEeeeecccchhhhhhhhccccccceeccChHHHHHhh-------hhcCCCCEE
Confidence 999999999999999988876543 33344444444433332 45789999999876532 356789999
Q ss_pred EeccchhhhccC-----------ChhHHHHHHHhcCCCCcEEEEeccccHHHH-HHHHHhcC
Q 001261 622 VMDEADRMFDMG-----------FEPQITRIVQNIRPDRQTVLFSATFPRQVE-ILARKVLN 671 (1112)
Q Consensus 622 ViDEah~~~~~g-----------f~~~i~~il~~~~~~~q~il~SAT~~~~~~-~l~~~~~~ 671 (1112)
||||||.|++.+ |...+..+....+...|+|++|||+++.+. .+.+.+++
T Consensus 167 VvDE~d~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~l~r~ll~ 228 (237)
T d1gkub1 167 FVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLN 228 (237)
T ss_dssp EESCHHHHHTSTHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHC
T ss_pred EEEChhhhhhcccchhHHHHhcCChHHHHHHHhhCCCCCeEEEEeCCCCcccHHHHHHHHhC
Confidence 999999998643 222222223334566889999999986543 33344444
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=1.1e-24 Score=228.67 Aligned_cols=189 Identities=19% Similarity=0.264 Sum_probs=141.2
Q ss_pred ccccCCCCHHHHHHHHH-CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEE
Q 001261 468 TWHQTGLTSKIMETIRK-LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (1112)
Q Consensus 468 ~~~~~~L~~~l~~~l~~-~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl 546 (1112)
..+.++|.+.+.+.|+. +||..++|+|.++|+.++.|+|+|+++|||||||++|.+|++.. ...++|+
T Consensus 3 ~~e~~~l~~~~~~~l~~~fg~~~~rp~Q~~ai~~~l~g~~vlv~apTGsGKT~~~~~~~~~~-----------~~~~~~v 71 (206)
T d1oywa2 3 QAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-----------NGLTVVV 71 (206)
T ss_dssp CCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS-----------SSEEEEE
T ss_pred chhhCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCCCcchhhhhhhhc-----------cCceEEe
Confidence 35667888888888887 59999999999999999999999999999999999999998853 4578999
Q ss_pred ccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHH----HHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEE
Q 001261 547 APTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ----ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLV 622 (1112)
Q Consensus 547 ~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~----~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vV 622 (1112)
+|+++|+.|+...+..++. ......+....... .........|+++||..+....... ...+..+.+||
T Consensus 72 ~P~~~L~~q~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~~---~~~~~~v~~lv 144 (206)
T d1oywa2 72 SPLISLMKDQVDQLQANGV----AAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLE---HLAHWNPVLLA 144 (206)
T ss_dssp CSCHHHHHHHHHHHHHTTC----CEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHH---HHTTSCEEEEE
T ss_pred ccchhhhhhHHHHHHhhcc----cccccccccccccchhHHHHHhcCCceEEEEechhhhchhhcc---cchhheeeeee
Confidence 9999999999998887643 33344443333222 2223445789999999875433221 24567799999
Q ss_pred eccchhhhccCChhHHH----HHHHhcCCCCcEEEEeccccHHHHH-HHHHh-cCCCe
Q 001261 623 MDEADRMFDMGFEPQIT----RIVQNIRPDRQTVLFSATFPRQVEI-LARKV-LNKPV 674 (1112)
Q Consensus 623 iDEah~~~~~gf~~~i~----~il~~~~~~~q~il~SAT~~~~~~~-l~~~~-~~~p~ 674 (1112)
+||||.+.++++..... ..+....+..|+|+||||+|+.+.. ++..+ +.+|+
T Consensus 145 iDEaH~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~lSATl~~~v~~di~~~L~l~~p~ 202 (206)
T d1oywa2 145 VDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPL 202 (206)
T ss_dssp ESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCE
T ss_pred eeeeeeeeccccchHHHHHHHHHHHHhCCCCceEEEEeCCCHHHHHHHHHHcCCCCCc
Confidence 99999998877433221 1222334678999999999998754 44443 78885
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.90 E-value=3.5e-24 Score=223.89 Aligned_cols=184 Identities=22% Similarity=0.294 Sum_probs=142.4
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHH
Q 001261 474 LTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553 (1112)
Q Consensus 474 L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa 553 (1112)
++..+...|...||..|+|+|.++|+.+++|+++|+++|||||||++++++++..+.. ++++|||+||++|+
T Consensus 10 ~~~~~~~~l~~~g~~~l~~~Q~~ai~~l~~~~~~il~apTGsGKT~~a~l~i~~~~~~--------~~~vl~l~P~~~L~ 81 (202)
T d2p6ra3 10 ISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK--------GGKSLYVVPLRALA 81 (202)
T ss_dssp HHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT--------TCCEEEEESSHHHH
T ss_pred hhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCchhHHHHHHHHHHhhc--------cCcceeecccHHHH
Confidence 5677888999999999999999999999999999999999999999999999987754 45799999999999
Q ss_pred HHHHHHHHHHhhhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccC
Q 001261 554 QQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG 633 (1112)
Q Consensus 554 ~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~g 633 (1112)
.|++..+++++... ..+....|+..... .....+.|+++||..+..++.... ..+..+++||+||+|.+.+..
T Consensus 82 ~q~~~~~~~~~~~~-~~v~~~~~~~~~~~---~~~~~~~ii~~~~~~~~~~~~~~~---~~~~~~~~ii~DE~h~~~~~~ 154 (202)
T d2p6ra3 82 GEKYESFKKWEKIG-LRIGISTGDYESRD---EHLGDCDIIVTTSEKADSLIRNRA---SWIKAVSCLVVDEIHLLDSEK 154 (202)
T ss_dssp HHHHHHHTTTTTTT-CCEEEECSSCBCCS---SCSTTCSEEEEEHHHHHHHHHTTC---SGGGGCCEEEETTGGGGGCTT
T ss_pred HHHHHHHHHHhhcc-ccceeeccCccccc---ccccccceeeeccHHHHHHHhccc---hhhhhhhhccccHHHHhcccc
Confidence 99999998876643 45555555543321 122357899999999988776543 457789999999999998877
Q ss_pred ChhHHHHHH---HhcCCCCcEEEEeccccHHHHHHHHHhcCCCe
Q 001261 634 FEPQITRIV---QNIRPDRQTVLFSATFPRQVEILARKVLNKPV 674 (1112)
Q Consensus 634 f~~~i~~il---~~~~~~~q~il~SAT~~~~~~~l~~~~~~~p~ 674 (1112)
+...+..++ ...++..|+|+||||+|+ ...++ .+++.+.
T Consensus 155 r~~~~~~~l~~i~~~~~~~~~l~lSATl~n-~~~~~-~~l~~~~ 196 (202)
T d2p6ra3 155 RGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIA-EWLDADY 196 (202)
T ss_dssp THHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHH-HHTTCEE
T ss_pred cchHHHHHHHHHHhcCCCCcEEEEcCCCCc-HHHHH-HHcCCCe
Confidence 666555444 445678899999999976 45565 4554443
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=99.89 E-value=6.5e-23 Score=204.13 Aligned_cols=125 Identities=24% Similarity=0.396 Sum_probs=109.6
Q ss_pred cccchhHHHHHHHHHhhh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCc
Q 001261 695 RPESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV 773 (1112)
Q Consensus 695 ~~~~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v 773 (1112)
.+....+..|+..+.... .+.++||||+++..|+.|+..|...|+.+..+||+|++.+|..+++.|++|++.|||||++
T Consensus 11 ~p~~~qv~dll~~i~~~~~~g~r~lvfc~t~~~~~~l~~~L~~~Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~vLVaT~v 90 (174)
T d1c4oa2 11 KPTENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINL 90 (174)
T ss_dssp ECSTTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCC
T ss_pred EeCCCCHHHHHHHHHHHHhcCCcEEEEEcchhHHHHHHHHHHhcCCceEEEecccchHHHHHHHHHHHCCCeEEEEeeee
Confidence 344445566776666543 4569999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCccEEEEeCCCC-----CHhHHHHHhcccCCCCCccEEEEEecC
Q 001261 774 AARGLDVKELELVINFDAPN-----HYEDYVHRVGRTGRAGRKGCAITFISE 820 (1112)
Q Consensus 774 ~~~GlDi~~v~~VI~~d~p~-----s~~~y~QriGR~gR~G~~g~~i~~~~~ 820 (1112)
+++|||+|+|++||||++|. +...|+|++||+||.| .|.+++|+..
T Consensus 91 ~~~GiDip~V~~Vi~~~~~~~~~~~~~~~~iq~~GR~gR~~-~g~~~~~~~~ 141 (174)
T d1c4oa2 91 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADR 141 (174)
T ss_dssp CCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSS
T ss_pred eeeeccCCCCcEEEEeccccccccchhHHHHHHhhhhhhcC-CCeeEEeecC
Confidence 99999999999999999776 4588999999999987 5777776654
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=99.89 E-value=6.5e-23 Score=207.73 Aligned_cols=126 Identities=22% Similarity=0.373 Sum_probs=109.2
Q ss_pred ecccchhHHHHHHHHHhhh-cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC
Q 001261 694 VRPESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS 772 (1112)
Q Consensus 694 ~~~~~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~ 772 (1112)
+.+....+..|+..+.... .+.++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|+++|||||+
T Consensus 10 vrp~~~qvd~ll~~i~~~~~~~~~~iif~~~~~~~~~~~~~l~~~g~~~~~~hg~~~~~eR~~~l~~Fr~g~~~vLVaTd 89 (181)
T d1t5la2 10 VRPTKGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGIN 89 (181)
T ss_dssp EECSTTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHHTSCSEEEESC
T ss_pred EEECCCcHHHHHHHHHHHHhcCCeEEEEeehhhhhHHHHHHHHhCCcceeEecCCccHHHHHHHHHHHHCCCCCEEEehh
Confidence 3444555666777666554 456999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCccEEEEeCCCC-----CHhHHHHHhcccCCCCCccEEEEEecC
Q 001261 773 VAARGLDVKELELVINFDAPN-----HYEDYVHRVGRTGRAGRKGCAITFISE 820 (1112)
Q Consensus 773 v~~~GlDi~~v~~VI~~d~p~-----s~~~y~QriGR~gR~G~~g~~i~~~~~ 820 (1112)
++++|||||+|++|||||+|. +...|+||+||+||.|. |.+++++..
T Consensus 90 v~~rGiDip~v~~VI~~d~p~~~~~~s~~~yi~R~GRagR~g~-~~~~~~~~~ 141 (181)
T d1t5la2 90 LLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAN-GHVIMYADT 141 (181)
T ss_dssp CCSSSCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTT-CEEEEECSS
T ss_pred HHHccCCCCCCCEEEEecCCcccccccHHHHHHHHHhhccccC-ceeEeecch
Confidence 999999999999999999996 68899999999999884 444444443
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.85 E-value=5.6e-21 Score=198.85 Aligned_cols=166 Identities=22% Similarity=0.238 Sum_probs=131.3
Q ss_pred CCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhc
Q 001261 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM 567 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~ 567 (1112)
.+|+++|.+++..+. ++++|+++|||||||+++++++...+.. .+.++|||+|+++|+.|+++.+.+++...
T Consensus 8 ~~pr~~Q~~~~~~~~-~~n~lv~~pTGsGKT~i~~~~~~~~~~~-------~~~~il~i~P~~~L~~q~~~~~~~~~~~~ 79 (200)
T d1wp9a1 8 IQPRIYQEVIYAKCK-ETNCLIVLPTGLGKTLIAMMIAEYRLTK-------YGGKVLMLAPTKPLVLQHAESFRRLFNLP 79 (200)
T ss_dssp HCCCHHHHHHHHHGG-GSCEEEECCTTSCHHHHHHHHHHHHHHH-------SCSCEEEECSSHHHHHHHHHHHHHHBCSC
T ss_pred CCCCHHHHHHHHHHh-cCCeEEEeCCCCcHHHHHHHHHHHHHHh-------cCCcEEEEcCchHHHHHHHHHHHHhhccc
Confidence 479999999999876 5679999999999999999888877654 24579999999999999999999998877
Q ss_pred CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCC
Q 001261 568 GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 647 (1112)
Q Consensus 568 ~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~ 647 (1112)
+..+....++.........+. .+.|+|+||+.+...+.... ..++.+++||+||||.+........+...+.....
T Consensus 80 ~~~v~~~~~~~~~~~~~~~~~-~~~i~i~t~~~~~~~~~~~~---~~~~~~~~vIiDE~H~~~~~~~~~~~~~~~~~~~~ 155 (200)
T d1wp9a1 80 PEKIVALTGEKSPEERSKAWA-RAKVIVATPQTIENDLLAGR---ISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAK 155 (200)
T ss_dssp GGGEEEECSCSCHHHHHHHHH-HCSEEEECHHHHHHHHHTTS---CCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCS
T ss_pred ccceeeeecccchhHHHHhhh-cccccccccchhHHHHhhhh---hhccccceEEEEehhhhhcchhHHHHHHHHHhcCC
Confidence 888888888777666544433 36899999999988876543 46778999999999988755433444444455566
Q ss_pred CCcEEEEeccccHHHHHH
Q 001261 648 DRQTVLFSATFPRQVEIL 665 (1112)
Q Consensus 648 ~~q~il~SAT~~~~~~~l 665 (1112)
..++++||||++.....+
T Consensus 156 ~~~~l~~SATp~~~~~~~ 173 (200)
T d1wp9a1 156 NPLVIGLTASPGSTPEKI 173 (200)
T ss_dssp SCCEEEEESCSCSSHHHH
T ss_pred CCcEEEEEecCCCcHHHH
Confidence 788999999986544433
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=7e-21 Score=193.26 Aligned_cols=165 Identities=21% Similarity=0.268 Sum_probs=133.3
Q ss_pred HHHHHH-hhhcCCeEEEEeCCHHHHHHHHHHHHhc--CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCC
Q 001261 704 LLELLG-EWYEKGKILIFVHSQEKCDALFRDLLKH--GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDV 780 (1112)
Q Consensus 704 ll~~l~-~~~~~~~vLIF~~s~~~~~~l~~~L~~~--g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi 780 (1112)
+...|. +...++++.|+||..+.++.++..|.+. ++.+..+||.|+..+++.+|..|.+|+++|||||++++.||||
T Consensus 20 i~~~I~~El~rGgQvy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm~~~eke~im~~F~~g~~~ILv~TtvIEvGiDv 99 (211)
T d2eyqa5 20 VREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDI 99 (211)
T ss_dssp HHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCC
T ss_pred HHHHHHHHHHcCCeEEEEEcCccchhhHHHHHHHhCCceEEEEEEeccCHHHHHHHHHHHHcCCcceEEEehhhhhccCC
Confidence 444443 4445779999999999999999999874 7899999999999999999999999999999999999999999
Q ss_pred CCccEEEEeCCCCC-HhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhHHHHHHHHHHHHhhhh
Q 001261 781 KELELVINFDAPNH-YEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAKVNQGL 859 (1112)
Q Consensus 781 ~~v~~VI~~d~p~s-~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~~~~~~~~~~~~~~ 859 (1112)
|++++||+++.+.. .+++.|..||+||.+..|+||+++..... ....-.+.|. .+
T Consensus 100 pnA~~iiI~~a~rfGLaQLhQLRGRVGR~~~~s~c~l~~~~~~~-~~~~a~~RL~-------------------~l---- 155 (211)
T d2eyqa5 100 PTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKA-MTTDAQKRLE-------------------AI---- 155 (211)
T ss_dssp TTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGGG-SCHHHHHHHH-------------------HH----
T ss_pred CCCcEEEEecchhccccccccccceeeecCccceEEEEecCCcC-CCchHHHHHH-------------------HH----
Confidence 99999999999975 66666777999999999999988864321 1111111111 11
Q ss_pred hcccCCCCCCCCcCCChhHHHHHHHHHHHHHHHcCC
Q 001261 860 EQAHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGF 895 (1112)
Q Consensus 860 ~~~~~~~~~g~g~~~~~~~~~~r~~~~~~~~~~~g~ 895 (1112)
....-.|.||.+++.|+++|+.|+.+|.+|+|+
T Consensus 156 ---~~~~dlg~GF~iA~~DL~iRG~G~llG~~QsG~ 188 (211)
T d2eyqa5 156 ---ASLEDLGAGFALATHDLEIRGAGELLGEEQSGS 188 (211)
T ss_dssp ---TTCCSBSHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred ---HhcccCCcceeeeHhHHhhcCCccccccccCCc
Confidence 112223789999999999999999999999994
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.84 E-value=5.3e-23 Score=211.62 Aligned_cols=167 Identities=19% Similarity=0.326 Sum_probs=122.8
Q ss_pred chhHHHHHHHHHhhhc-CCeEEEEeCCHHHHHH--------HHHHHHhc---CCCeeeecCCCCHHHHHHHHHHhhcCCc
Q 001261 698 SDRFLRLLELLGEWYE-KGKILIFVHSQEKCDA--------LFRDLLKH---GYPCLSLHGAKDQTDRESTISDFKSNVC 765 (1112)
Q Consensus 698 ~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~--------l~~~L~~~---g~~~~~ihg~~~~~~R~~~~~~F~~g~~ 765 (1112)
.++...++..|..... ++++.|+||.++..+. .+..|.+. ++.+..+||.|++.+++.++..|++|++
T Consensus 12 ~~~~~~v~~~I~~el~~g~QvyvVcP~Ieese~~~~~~~~e~~~~l~~~~~p~~~v~~lHG~m~~~eke~~m~~F~~g~~ 91 (206)
T d1gm5a4 12 MDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRY 91 (206)
T ss_dssp SSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSS
T ss_pred cccHHHHHHHHHHHHHcCCCEEEEEeeecccccccchhhHHHHHHHHHhcCCCCeEEEEeecccHHHHHHHHHHHHCCCE
Confidence 3456667777766554 5688899987655443 33334332 6788999999999999999999999999
Q ss_pred cEEEecCcccccCCCCCccEEEEeCCCCC-HhHHHHHhcccCCCCCccEEEEEecCCccCchHHHHHHHhhccCCCChhH
Q 001261 766 NLLIATSVAARGLDVKELELVINFDAPNH-YEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDL 844 (1112)
Q Consensus 766 ~VLVaT~v~~~GlDi~~v~~VI~~d~p~s-~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~~~~i~~~l~~~~~~vp~~l 844 (1112)
+|||||+|+++|||||++++||++++|.. .+.|.|..||+||.|.+|+||+|+++........+ +.+.
T Consensus 92 ~iLVaTtViE~GIDip~a~~iii~~a~~fglsqlhQlrGRvGR~~~~~~~~l~~~~~~~~~~~rl-~~~~---------- 160 (206)
T d1gm5a4 92 DILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMERL-RFFT---------- 160 (206)
T ss_dssp SBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHHHHH-HHHH----------
T ss_pred EEEEEehhhhccccccCCcEEEEEccCCccHHHHHhhhhheeeccccceeEeeeccccccchhhh-hhcc----------
Confidence 99999999999999999999999999986 55555668999999999999998875432111111 1110
Q ss_pred HHHHHHHHHHHhhhhhcccCCCCCCCCcCCChhHHHHHHHHHHHHHHHcCCCC
Q 001261 845 KALADSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEE 897 (1112)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~r~~~~~~~~~~~g~~~ 897 (1112)
..++||.+++.|+++|+.|+.+|.+|+|+..
T Consensus 161 ----------------------~~~dGf~ia~~Dl~lRG~G~~lG~~QsG~~~ 191 (206)
T d1gm5a4 161 ----------------------LNTDGFKIAEYDLKTRGPGEFFGVKQHGLSG 191 (206)
T ss_dssp ----------------------TCCCSHHHHHHHHHSSCCCC----CCCSSCC
T ss_pred ----------------------ccCCCchHHHHHHhccCCccccccccCCCCc
Confidence 1247999999999999999999999999754
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.83 E-value=1.1e-21 Score=189.49 Aligned_cols=101 Identities=30% Similarity=0.501 Sum_probs=92.6
Q ss_pred hcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeC-
Q 001261 712 YEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFD- 790 (1112)
Q Consensus 712 ~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d- 790 (1112)
...+++||||+|+..|+.|+..|...|+.+..|||+|++ +.|++|...|||||+++++||| +++.+||||+
T Consensus 33 ~~~~k~IVFc~t~~~ae~la~~L~~~G~~~~~~H~~~~~-------~~~~~~~~~vlvaTd~~~~GiD-~~v~~Vi~~~~ 104 (138)
T d1jr6a_ 33 IKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDV-------SVIPTNGDVVVVATDALMTGFT-GDFDSVIDCNT 104 (138)
T ss_dssp HTTSCEEEECSCHHHHHHHHHHHHHHTCEEEEECTTCCS-------CCCTTSSCEEEEESSSSCSSSC-CCBSEEEECSE
T ss_pred cCCCCEEEEeCcHHHHHHHHHHHhccccchhhhhccchh-------hhhhhhhcceeehhHHHHhccc-cccceEEEEEe
Confidence 356899999999999999999999999999999999985 4588999999999999999999 9999999855
Q ss_pred ---CCCCHhHHHHHhcccCCCCCccEEEEEecCCc
Q 001261 791 ---APNHYEDYVHRVGRTGRAGRKGCAITFISEED 822 (1112)
Q Consensus 791 ---~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d 822 (1112)
+|.++..|+||+||+|| |++|. |+|+++.+
T Consensus 105 ~~~~P~~~~~y~qr~GR~gR-g~~G~-~~~i~~~e 137 (138)
T d1jr6a_ 105 SDGKPQDAVSRTQRRGRTGR-GKPGI-YRFVAPGE 137 (138)
T ss_dssp ETTEECCHHHHHHHHTTBCS-SSCEE-EEECCSSC
T ss_pred cCCCCCCHHHHHhHhccccC-CCCcE-EEEEcCCC
Confidence 69999999999999999 99995 77998865
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=1.9e-18 Score=180.61 Aligned_cols=171 Identities=19% Similarity=0.190 Sum_probs=134.4
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHc----C--CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccc
Q 001261 476 SKIMETIRKLNYEKPMPIQAQALPVIMS----G--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT 549 (1112)
Q Consensus 476 ~~l~~~l~~~~~~~pt~iQ~~ai~~il~----g--~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Pt 549 (1112)
....+.+...--..+|+-|..++..|.. + .+.|++|.||||||.+|+..++..+.. |.+++||+||
T Consensus 42 ~~~~~~~~~~lP~~lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~~--------g~qv~~l~Pt 113 (233)
T d2eyqa3 42 REQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN--------HKQVAVLVPT 113 (233)
T ss_dssp HHHHHHHHHTCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT--------TCEEEEECSS
T ss_pred HHHHHhhhhccccccchhHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHHHHHc--------CCceEEEccH
Confidence 4444444443334789999999988763 2 478999999999999999999987653 7899999999
Q ss_pred hhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH---HHHhcC-CeEEEeCchHHHHHHHhcCCcccccCCceEEEecc
Q 001261 550 RELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKRG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDE 625 (1112)
Q Consensus 550 reLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~~~-~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDE 625 (1112)
..|+.|++..|+.++..+++.+.+++|+.+..+.. ..+..| .+|||+|...|.. ...+.++++|||||
T Consensus 114 ~~La~Q~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~g~~~iviGths~l~~--------~~~f~~LgLiIiDE 185 (233)
T d2eyqa3 114 TLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQS--------DVKFKDLGLLIVDE 185 (233)
T ss_dssp HHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHS--------CCCCSSEEEEEEES
T ss_pred HHhHHHHHHHHHHHHhhCCCEEEeccCcccchhHHHHHHHHhCCCCCEEEeehhhhcc--------CCccccccceeeec
Confidence 99999999999999999999999999998876553 344444 6999999876532 24678999999999
Q ss_pred chhhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHHH
Q 001261 626 ADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILAR 667 (1112)
Q Consensus 626 ah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~~ 667 (1112)
-|+ |...-...+.....+..+|++|||+.+....++.
T Consensus 186 eH~-----fg~kQ~~~l~~~~~~~~~l~~SATPiprtl~~~~ 222 (233)
T d2eyqa3 186 EHR-----FGVRHKERIKAMRANVDILTLTATPIPRTLNMAM 222 (233)
T ss_dssp GGG-----SCHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHH
T ss_pred hhh-----hhhHHHHHHHhhCCCCCEEEEecchhHHHHHHHH
Confidence 998 4444455566666778999999999877654443
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.78 E-value=1.1e-18 Score=185.75 Aligned_cols=167 Identities=21% Similarity=0.210 Sum_probs=129.1
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHc----C--CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchh
Q 001261 478 IMETIRKLNYEKPMPIQAQALPVIMS----G--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRE 551 (1112)
Q Consensus 478 l~~~l~~~~~~~pt~iQ~~ai~~il~----g--~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptre 551 (1112)
+...+..+.| .+|.-|.+|+..|.. + ...|++|.||||||.+|+..++..+.. |.+|+||+||..
T Consensus 73 ~~~f~~~LPF-eLT~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~--------g~q~~~m~Pt~~ 143 (264)
T d1gm5a3 73 AEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA--------GFQTAFMVPTSI 143 (264)
T ss_dssp HHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH--------TSCEEEECSCHH
T ss_pred HHHHHhhccc-cCCchHHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHHHHHhc--------ccceeEEeehHh
Confidence 3344556776 699999999999863 2 478999999999999999999988765 678999999999
Q ss_pred HHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH---HHHhc-CCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccch
Q 001261 552 LVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD 627 (1112)
Q Consensus 552 La~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah 627 (1112)
||.|++..+.+++..+++.+..++|+.+..+.. ..+.. .++|||||...|.+- ..+.++++|||||-|
T Consensus 144 La~Qh~~~~~~~f~~~~~~v~~l~~~~~~~~r~~~~~~~~~g~~~iiIGThsl~~~~--------~~f~~LglviiDEqH 215 (264)
T d1gm5a3 144 LAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQED--------VHFKNLGLVIIDEQH 215 (264)
T ss_dssp HHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHC--------CCCSCCCEEEEESCC
T ss_pred hhHHHHHHHHHhhhhccccceeeccccchHHHHHHHHHHHCCCCCEEEeehHHhcCC--------CCccccceeeecccc
Confidence 999999999999999999999999998876543 33333 479999998765322 356789999999999
Q ss_pred hhhccCChhHHHHHHHhcCCCCcEEEEeccccHHHHHHH
Q 001261 628 RMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILA 666 (1112)
Q Consensus 628 ~~~~~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~~l~ 666 (1112)
++.- .....+.....+.++|+||||+.+....++
T Consensus 216 ~fgv-----~Qr~~l~~~~~~~~~l~~SATPiprtl~~~ 249 (264)
T d1gm5a3 216 RFGV-----KQREALMNKGKMVDTLVMSATPIPRSMALA 249 (264)
T ss_dssp CC----------CCCCSSSSCCCEEEEESSCCCHHHHHH
T ss_pred ccch-----hhHHHHHHhCcCCCEEEEECCCCHHHHHHH
Confidence 8532 223333334456789999999877654443
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.77 E-value=4.6e-19 Score=194.98 Aligned_cols=124 Identities=27% Similarity=0.473 Sum_probs=108.4
Q ss_pred chhHHHHHHHHHhh---hcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecC--------CCCHHHHHHHHHHhhcCCcc
Q 001261 698 SDRFLRLLELLGEW---YEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHG--------AKDQTDRESTISDFKSNVCN 766 (1112)
Q Consensus 698 ~~k~~~ll~~l~~~---~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg--------~~~~~~R~~~~~~F~~g~~~ 766 (1112)
..|+..|..+|... ..+.++||||++...++.++..|...++++..+|| ++++.+|..+++.|++|.++
T Consensus 142 ~pK~~~l~~~l~~~~~~~~~~k~iiF~~~~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F~~g~~~ 221 (286)
T d1wp9a2 142 HPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFN 221 (286)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCS
T ss_pred CcHHHHHHHHHHHHHHhCCCCcEEEEeCcHHhHHHHHHHHHHcCCceEEeeccccccccchhchHHHHHHHHHHHcCCCc
Confidence 45677777666544 34569999999999999999999999999988877 56667899999999999999
Q ss_pred EEEecCcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCc
Q 001261 767 LLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEED 822 (1112)
Q Consensus 767 VLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d 822 (1112)
|||||+++++|||+|+|++||+||+|+++..|+||+||+||.+ .|.+|+|+++..
T Consensus 222 vLv~T~~~~~Gld~~~~~~Vi~~d~~~~~~~~~Qr~GR~gR~~-~~~~~~l~~~~~ 276 (286)
T d1wp9a2 222 VLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHM-PGRVIILMAKGT 276 (286)
T ss_dssp EEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCC-CSEEEEEEETTS
T ss_pred EEEEccceeccccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCC-CCEEEEEEeCCC
Confidence 9999999999999999999999999999999999999999975 799999998753
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.70 E-value=1.5e-17 Score=171.78 Aligned_cols=110 Identities=20% Similarity=0.354 Sum_probs=97.3
Q ss_pred cCCeEEEEeCCHHHHHHHHHHHHhc------------------------------CCCeeeecCCCCHHHHHHHHHHhhc
Q 001261 713 EKGKILIFVHSQEKCDALFRDLLKH------------------------------GYPCLSLHGAKDQTDRESTISDFKS 762 (1112)
Q Consensus 713 ~~~~vLIF~~s~~~~~~l~~~L~~~------------------------------g~~~~~ihg~~~~~~R~~~~~~F~~ 762 (1112)
.++++||||+|+..|+.++..|... ...++++||+|++.+|..+...|++
T Consensus 39 ~~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~GIa~hh~~l~~~~r~~ie~~f~~ 118 (201)
T d2p6ra4 39 ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRR 118 (201)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHT
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhhhHHHHHHHhccHHHHHHHhhhhhHHHHHHHHhC
Confidence 3679999999999999998888652 1237889999999999999999999
Q ss_pred CCccEEEecCcccccCCCCCccEEEE-------eCCCCCHhHHHHHhcccCCCCC--ccEEEEEecCCc
Q 001261 763 NVCNLLIATSVAARGLDVKELELVIN-------FDAPNHYEDYVHRVGRTGRAGR--KGCAITFISEED 822 (1112)
Q Consensus 763 g~~~VLVaT~v~~~GlDi~~v~~VI~-------~d~p~s~~~y~QriGR~gR~G~--~g~~i~~~~~~d 822 (1112)
|.++|||||+++++|||+|..++||+ ++.|.++.+|+||+|||||.|. .|.||+|+.+.+
T Consensus 119 g~i~vlvaT~~l~~Gin~p~~~vvi~~~~~~d~~~~~~~~~~~~q~~GRAGR~g~~~~G~~~l~~~~~~ 187 (201)
T d2p6ra4 119 GNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRD 187 (201)
T ss_dssp TSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGG
T ss_pred CCceEEEechHHHhhcCCCCceEEEecceeccCCcCCCCHHHHHHHhcccCCCCCCCeeEEEEEeCCCC
Confidence 99999999999999999999999996 6778899999999999999884 788988876654
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.67 E-value=1.6e-17 Score=175.64 Aligned_cols=107 Identities=21% Similarity=0.292 Sum_probs=95.2
Q ss_pred cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHH----------HHHHHHhhcCCccEEEecCcccc---cCC
Q 001261 713 EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDR----------ESTISDFKSNVCNLLIATSVAAR---GLD 779 (1112)
Q Consensus 713 ~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R----------~~~~~~F~~g~~~VLVaT~v~~~---GlD 779 (1112)
..+++||||+++..|+.|+..|...|+++..+||++++..| ..+++.|.+|..++||+|+++.+ |+|
T Consensus 35 kggk~LVFcnSR~~aE~La~~L~~~Gi~a~~~Hgglsq~~R~~~gd~~i~~~~aLe~f~~G~~dvVVaT~~~a~g~~giD 114 (299)
T d1a1va2 35 KGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFS 114 (299)
T ss_dssp HSSEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCGGGSCSSSSEEEEECTTC---CCCCBSEEEECCEEEEEEEECC
T ss_pred cCCCEEEECCcHHHHHHHHHHHHHCCCCEEEEeCCchHHHHHhccchHHHHHHHHHHHhcCCCcEEEEEeehhccCCCCC
Confidence 46899999999999999999999999999999999999876 45788999999999999999998 678
Q ss_pred CCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecC
Q 001261 780 VKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISE 820 (1112)
Q Consensus 780 i~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~ 820 (1112)
++.+.+||+|++|.|.+.|+||+||+|| |+.|..++++..
T Consensus 115 id~V~~VI~~d~P~SvesyIQRiGRTGR-Gr~G~~~~l~~~ 154 (299)
T d1a1va2 115 LDPTFTIETTTLPQDAVSRTQRRGRTGR-GKPGIYRFVAPG 154 (299)
T ss_dssp CSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEEEEESCSC
T ss_pred CCcceEEEeCCCCCCHHHHHhhccccCC-CCCceEEEEecC
Confidence 8888999999999999999999999999 889987766543
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.67 E-value=3.2e-19 Score=191.77 Aligned_cols=118 Identities=13% Similarity=0.222 Sum_probs=101.2
Q ss_pred ccchhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEec----
Q 001261 696 PESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT---- 771 (1112)
Q Consensus 696 ~~~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT---- 771 (1112)
..++++..|..+|... +.++||||+++..|+.|+.+|.. .+||++++.+|..+++.|++|.++|||||
T Consensus 9 ~~~~~~~~l~~~l~~~--~~~~iif~~~~~~~~~l~~~l~~------~~hg~~~~~~R~~~~~~f~~g~~~vLVaT~a~~ 80 (248)
T d1gkub2 9 VNDESISTLSSILEKL--GTGGIIYARTGEEAEEIYESLKN------KFRIGIVTATKKGDYEKFVEGEIDHLIGTAHYY 80 (248)
T ss_dssp ESCCCTTTTHHHHTTS--CSCEEEEESSHHHHHHHHHTTTT------SSCEEECTTSSSHHHHHHHHTSCSEEEEECC--
T ss_pred cCchHHHHHHHHHHHh--CCCEEEEECCHHHHHHHHHHHHH------hccCCCCHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 3567788888888753 46799999999999999999975 38999999999999999999999999999
Q ss_pred CcccccCCCCC-ccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCccCc
Q 001261 772 SVAARGLDVKE-LELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKY 825 (1112)
Q Consensus 772 ~v~~~GlDi~~-v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~~~ 825 (1112)
+++++|||+|+ |++|||||+|+ |+||+||+||.|+.|.+++++...+...
T Consensus 81 ~v~~rGlDip~~v~~VI~~d~P~----~~~r~gR~~R~g~~~~~~~~~~~~~~~~ 131 (248)
T d1gkub2 81 GTLVRGLDLPERIRFAVFVGCPS----FRVTIEDIDSLSPQMVKLLAYLYRNVDE 131 (248)
T ss_dssp ----CCSCCTTTCCEEEEESCCE----EEEECSCGGGSCHHHHHHHHTTTSCHHH
T ss_pred chhhhccCccccccEEEEeCCCc----chhhhhhhhccCcceEeeeeccHhhHHH
Confidence 78999999996 99999999996 8899999999999999998887765543
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.65 E-value=8.3e-17 Score=166.85 Aligned_cols=117 Identities=20% Similarity=0.386 Sum_probs=102.8
Q ss_pred chhHHHHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCccccc
Q 001261 698 SDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARG 777 (1112)
Q Consensus 698 ~~k~~~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~G 777 (1112)
..|+..|..+|... ...++||||++...++.|+..| .+..+||++++.+|..+++.|++|.++|||||+++++|
T Consensus 78 ~~K~~~l~~ll~~~-~~~k~lvf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~R~~~l~~F~~~~~~vLv~~~~~~~G 151 (200)
T d2fwra1 78 KNKIRKLREILERH-RKDKIIIFTRHNELVYRISKVF-----LIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEG 151 (200)
T ss_dssp SHHHHHHHHHHHHT-SSSCBCCBCSCHHHHHHHHHHT-----TCCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSS
T ss_pred HHHHHHHHHHHHhC-CCCcEEEEeCcHHHHHHHHhhc-----CcceeeCCCCHHHHHHHHHHhhcCCeeeeeecchhhcc
Confidence 46778888888763 4679999999999999998776 45678999999999999999999999999999999999
Q ss_pred CCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCc---cEEEEEecC
Q 001261 778 LDVKELELVINFDAPNHYEDYVHRVGRTGRAGRK---GCAITFISE 820 (1112)
Q Consensus 778 lDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~---g~~i~~~~~ 820 (1112)
||+|.+++||+|++|+|+..|+||+||++|.|+. ..+|.|++.
T Consensus 152 idl~~~~~vi~~~~~~s~~~~~Q~iGR~~R~~~~k~~~~i~~~v~~ 197 (200)
T d2fwra1 152 IDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISR 197 (200)
T ss_dssp SCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEEC
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHHhcCCCCCCCcEEEEEEEecC
Confidence 9999999999999999999999999999999863 345556654
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Probab=99.65 E-value=9.9e-17 Score=174.73 Aligned_cols=154 Identities=18% Similarity=0.140 Sum_probs=116.5
Q ss_pred CCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhc
Q 001261 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM 567 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~ 567 (1112)
..|+++|.+|+..++.++..|+++|||+|||+++++.+...+.. .+.++|||||+++|+.||++.+..++...
T Consensus 112 ~~~rdyQ~~av~~~l~~~~~il~~pTGsGKT~i~~~i~~~~~~~-------~~~k~Liivp~~~Lv~Q~~~~f~~~~~~~ 184 (282)
T d1rifa_ 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-------YEGKILIIVPTTALTTQMADDFVDYRLFS 184 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH-------CSSEEEEECSSHHHHHHHHHHHHHHTSCC
T ss_pred cccchHHHHHHHHHHhcCCceeEEEcccCccHHHHHHHHHhhhc-------ccceEEEEEcCchhHHHHHHHHHHhhccc
Confidence 37999999999999999999999999999999766554433332 13479999999999999999999987655
Q ss_pred CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCC
Q 001261 568 GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 647 (1112)
Q Consensus 568 ~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~ 647 (1112)
...+..+++|...... ......|+|+|+..+.... ...++++++||+||||++. ...+..|+..+.+
T Consensus 185 ~~~~~~~~~g~~~~~~---~~~~~~i~i~t~qs~~~~~------~~~~~~f~~VIvDEaH~~~----a~~~~~il~~~~~ 251 (282)
T d1rifa_ 185 HAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQP------KEWFSQFGMMMNDECHLAT----GKSISSIISGLNN 251 (282)
T ss_dssp GGGEEECSTTCSSTTC---CCTTCSEEEECHHHHTTSC------GGGGGGEEEEEEETGGGCC----HHHHHHHTTTCTT
T ss_pred cccceeecceeccccc---ccccceEEEEeeehhhhhc------ccccCCCCEEEEECCCCCC----chhHHHHHHhccC
Confidence 5556667776543211 1234689999998764332 1346789999999999864 4567788887766
Q ss_pred CCcEEEEeccccHH
Q 001261 648 DRQTVLFSATFPRQ 661 (1112)
Q Consensus 648 ~~q~il~SAT~~~~ 661 (1112)
....++||||++..
T Consensus 252 ~~~rlGlTaT~~~~ 265 (282)
T d1rifa_ 252 CMFKFGLSGSLRDG 265 (282)
T ss_dssp CCEEEEECSSCCTT
T ss_pred CCeEEEEEeecCCC
Confidence 66679999998653
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.63 E-value=6.3e-16 Score=160.79 Aligned_cols=136 Identities=22% Similarity=0.160 Sum_probs=101.7
Q ss_pred CChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcC
Q 001261 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMG 568 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~ 568 (1112)
+|+++|.+++..++.++..|++++||+|||++++..+. .+ +.++|||||++.|+.||.+.+..+...
T Consensus 70 ~Lr~yQ~eav~~~~~~~~~ll~~~tG~GKT~~a~~~~~-~~----------~~~~Liv~p~~~L~~q~~~~~~~~~~~-- 136 (206)
T d2fz4a1 70 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAIN-EL----------STPTLIVVPTLALAEQWKERLGIFGEE-- 136 (206)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHH-HS----------CSCEEEEESSHHHHHHHHHHHGGGCGG--
T ss_pred CcCHHHHHHHHHHHhCCCcEEEeCCCCCceehHHhHHH-Hh----------cCceeEEEcccchHHHHHHHHHhhccc--
Confidence 68999999999999999999999999999998765443 21 346899999999999999999876432
Q ss_pred ceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhcCCC
Q 001261 569 VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD 648 (1112)
Q Consensus 569 i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~ 648 (1112)
.+....|+. .....|+|+|+..+...... ....+++||+||||++.. ..+..++..++ .
T Consensus 137 -~~~~~~~~~---------~~~~~i~i~t~~~~~~~~~~------~~~~~~lvIiDEaH~~~a----~~~~~i~~~~~-~ 195 (206)
T d2fz4a1 137 -YVGEFSGRI---------KELKPLTVSTYDSAYVNAEK------LGNRFMLLIFDEVHHLPA----ESYVQIAQMSI-A 195 (206)
T ss_dssp -GEEEESSSC---------BCCCSEEEEEHHHHHHTHHH------HTTTCSEEEEECSSCCCT----TTHHHHHHTCC-C
T ss_pred -chhhccccc---------ccccccccceehhhhhhhHh------hCCcCCEEEEECCeeCCc----HHHHHHHhccC-C
Confidence 233333332 23467999999987655432 245789999999999753 34566666553 4
Q ss_pred CcEEEEeccc
Q 001261 649 RQTVLFSATF 658 (1112)
Q Consensus 649 ~q~il~SAT~ 658 (1112)
...|+||||+
T Consensus 196 ~~~lgLTATl 205 (206)
T d2fz4a1 196 PFRLGLTATF 205 (206)
T ss_dssp SEEEEEEESC
T ss_pred CcEEEEecCC
Confidence 4578999997
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.59 E-value=3.1e-16 Score=151.92 Aligned_cols=135 Identities=18% Similarity=0.172 Sum_probs=90.9
Q ss_pred HcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChH
Q 001261 502 MSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVA 581 (1112)
Q Consensus 502 l~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~ 581 (1112)
..|+++|++++||||||++++..++..+.. .+.++||++|++.|+.|+++.+.. .++.+....+....
T Consensus 5 ~~~~~~il~~~tGsGKT~~~~~~~~~~~~~-------~~~~vli~~p~~~l~~q~~~~~~~----~~~~~~~~~~~~~~- 72 (140)
T d1yksa1 5 KKGMTTVLDFHPGAGKTRRFLPQILAECAR-------RRLRTLVLAPTRVVLSEMKEAFHG----LDVKFHTQAFSAHG- 72 (140)
T ss_dssp STTCEEEECCCTTSSTTTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTTT----SCEEEESSCCCCCC-
T ss_pred HcCCcEEEEcCCCCChhHHHHHHHHHHhhh-------cCceeeeeecchhHHHHHHHHhhh----hhhhhccccccccc-
Confidence 468899999999999999888777766654 257899999999999998776543 23333222111111
Q ss_pred HHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChh-HHHHHHHhcCCCCcEEEEecccc
Q 001261 582 QQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEP-QITRIVQNIRPDRQTVLFSATFP 659 (1112)
Q Consensus 582 ~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~-~i~~il~~~~~~~q~il~SAT~~ 659 (1112)
.....+.++|...+...... ...+.++++|||||||.+...++.. .+...+.. .++.++|+||||+|
T Consensus 73 ------~~~~~~~~~~~~~l~~~~~~----~~~~~~~~lvIiDEaH~~~~~~~~~~~~~~~~~~-~~~~~~l~lTATPp 140 (140)
T d1yksa1 73 ------SGREVIDAMCHATLTYRMLE----PTRVVNWEVIIMDEAHFLDPASIAARGWAAHRAR-ANESATILMTATPP 140 (140)
T ss_dssp ------CSSCCEEEEEHHHHHHHHTS----SSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHH-TTSCEEEEECSSCT
T ss_pred ------ccccchhhhhHHHHHHHHhc----cccccceeEEEEccccccChhhHHHHHHHHHHhh-CCCCCEEEEEcCCC
Confidence 12356788888877665432 2567889999999999874332211 11122222 35789999999997
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.51 E-value=4.4e-15 Score=143.58 Aligned_cols=127 Identities=19% Similarity=0.083 Sum_probs=87.3
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHH
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ 583 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~ 583 (1112)
.+..|+.+|||||||+++...++ . .+.++||++|++.|+.||+..+..++. ......++|...
T Consensus 8 ~~~~ll~apTGsGKT~~~~~~~~----~-------~~~~vli~~P~~~l~~q~~~~~~~~~~---~~~~~~~~~~~~--- 70 (136)
T d1a1va1 8 FQVAHLHAPTGSGKSTKVPAAYA----A-------QGYKVLVLNPSVAATLGFGAYMSKAHG---VDPNIRTGVRTI--- 70 (136)
T ss_dssp CEEEEEECCTTSCTTTHHHHHHH----T-------TTCCEEEEESCHHHHHHHHHHHHHHHS---CCCEEECSSCEE---
T ss_pred CCEEEEEeCCCCCHHHHHHHHHH----H-------cCCcEEEEcChHHHHHHHHHHHHHHhh---cccccccccccc---
Confidence 45679999999999986544332 1 366899999999999999999887653 333444444322
Q ss_pred HHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHhc--CCCCcEEEEeccc
Q 001261 584 ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI--RPDRQTVLFSATF 658 (1112)
Q Consensus 584 ~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~~--~~~~q~il~SAT~ 658 (1112)
.....++++|++.+.... ...+.++++|||||+|++... ....+..++..+ .+...+|++|||+
T Consensus 71 ----~~~~~~~~~~~~~~~~~~------~~~~~~~~~vIiDE~H~~~~~-~~~~~~~~l~~~~~~~~~~~l~~TATP 136 (136)
T d1a1va1 71 ----TTGSPITYSTYGKFLADG------GCSGGAYDIIICDECHSTDAT-SILGIGTVLDQAETAGARLVVLATATP 136 (136)
T ss_dssp ----CCCCSEEEEEHHHHHHTT------GGGGCCCSEEEEETTTCCSHH-HHHHHHHHHHHTTTTTCSEEEEEESSC
T ss_pred ----ccccceEEEeeeeecccc------chhhhcCCEEEEecccccCHH-HHHHHHHHHHHHHHCCCCcEEEEeCCC
Confidence 123578999988764432 246788999999999975321 222344555544 3566899999996
|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=99.43 E-value=6.8e-13 Score=147.71 Aligned_cols=121 Identities=16% Similarity=0.231 Sum_probs=107.0
Q ss_pred cchhHHHHHHHHHhhh--cCCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCc---cEEEec
Q 001261 697 ESDRFLRLLELLGEWY--EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVC---NLLIAT 771 (1112)
Q Consensus 697 ~~~k~~~ll~~l~~~~--~~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~---~VLVaT 771 (1112)
.+.|+..|..+|.... .+.++|||++.....+.|...|...|+.+..+||+++..+|..++..|+++.. -+|++|
T Consensus 99 ~S~Kl~~L~~ll~~~~~~~g~KvlIFs~~~~~ld~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~vlLls~ 178 (346)
T d1z3ix1 99 LSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSS 178 (346)
T ss_dssp GSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEG
T ss_pred cCHHHHHHHHHHHHHHHhcCCceeEEeehhhhhHHHHHHHhhhhccccccccchhHHHHHHHHHhhhcccccceeeeecc
Confidence 3568887777776542 35699999999999999999999999999999999999999999999997754 367888
Q ss_pred CcccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEE
Q 001261 772 SVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITF 817 (1112)
Q Consensus 772 ~v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~ 817 (1112)
.+++.|||+..+++||+||++|++..+.|++||+.|.|++..|+++
T Consensus 179 ~agg~GlnL~~a~~vi~~d~~wnp~~~~Qa~~R~~R~GQ~~~V~v~ 224 (346)
T d1z3ix1 179 KAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIY 224 (346)
T ss_dssp GGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEE
T ss_pred hhhhhccccccceEEEEecCCCccchHhHhhhcccccCCCCceEEE
Confidence 9999999999999999999999999999999999999988765543
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.38 E-value=8.2e-13 Score=140.69 Aligned_cols=124 Identities=21% Similarity=0.278 Sum_probs=93.4
Q ss_pred cchhHHHHHHHHHhhhc-CCeEEEEeCCHHHHHHHHHHHHhc-CCCeeeecCCCCHHHHHHHHHHhhcCC-ccEEE-ecC
Q 001261 697 ESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKH-GYPCLSLHGAKDQTDRESTISDFKSNV-CNLLI-ATS 772 (1112)
Q Consensus 697 ~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~-g~~~~~ihg~~~~~~R~~~~~~F~~g~-~~VLV-aT~ 772 (1112)
.+.|+..|.++|..... +.++||||+....++.+...|... |+.+..+||+++..+|..++..|.++. ..||| +|.
T Consensus 67 ~S~K~~~l~~~l~~~~~~g~kviIFs~~~~~~~~l~~~l~~~~~~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vll~~~~ 146 (244)
T d1z5za1 67 RSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK 146 (244)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred hhhHHHHHHHHHHhhcccccceEEEeeceehHHHHHHHHHhhccceEEEEecccchhccchhhhhhhccccchhcccccc
Confidence 46789999999887554 458999999999999999988754 899999999999999999999998764 56665 557
Q ss_pred cccccCCCCCccEEEEeCCCCCHhHHHHHhcccCCCCCccE--EEEEecC
Q 001261 773 VAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGC--AITFISE 820 (1112)
Q Consensus 773 v~~~GlDi~~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~--~i~~~~~ 820 (1112)
+++.|||++.+++||+|++||++..+.|++||+.|.|+... +|.|++.
T Consensus 147 ~~g~Glnl~~a~~vi~~~~~wn~~~~~Qa~~R~~R~Gq~~~v~i~~l~~~ 196 (244)
T d1z5za1 147 AGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISV 196 (244)
T ss_dssp TTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEET
T ss_pred ccccccccchhhhhhhcCchhhhHHHhhhcceeeecCCCCceEEEEEeeC
Confidence 88999999999999999999999999999999999997654 4445554
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.37 E-value=5.8e-13 Score=144.01 Aligned_cols=101 Identities=20% Similarity=0.257 Sum_probs=82.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCcccccCCCCCccEEEEeCC--
Q 001261 714 KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDA-- 791 (1112)
Q Consensus 714 ~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~~GlDi~~v~~VI~~d~-- 791 (1112)
.|++||||++...++.++..|...|+.|+.+||.+...++. .|++|..+|||||+++++|||| +|.+||++++
T Consensus 36 ~g~~~~F~~s~~~~~~~a~~L~~~g~~V~~l~~~~~~~e~~----~~~~~~~~~~~~t~~~~~~~~~-~~~~vid~g~~~ 110 (299)
T d1yksa2 36 KRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYP----TIKQKKPDFILATDIAEMGANL-CVERVLDCRTAF 110 (299)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC------------CCCSEEEESSSTTCCTTC-CCSEEEECCEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCcCcHhHHh----hhhcCCcCEEEEechhhhceec-CceEEEecCcee
Confidence 68999999999999999999999999999999999976654 5789999999999999999999 5999997554
Q ss_pred -----------------CCCHhHHHHHhcccCCCCCccEEEEEec
Q 001261 792 -----------------PNHYEDYVHRVGRTGRAGRKGCAITFIS 819 (1112)
Q Consensus 792 -----------------p~s~~~y~QriGR~gR~G~~g~~i~~~~ 819 (1112)
|.+.+...||.||+||.+....++.+|.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~gr~~~~~~~~~~y~ 155 (299)
T d1yksa2 111 KPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYS 155 (299)
T ss_dssp EEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred ceeeecCCCCeeEEeeeecCHHHHHHhcccccccCCCceEEEEeC
Confidence 3477888999999999876655655665
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=99.30 E-value=1.3e-11 Score=135.44 Aligned_cols=160 Identities=19% Similarity=0.242 Sum_probs=104.5
Q ss_pred CChHHHHHHHHHHH---------cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHH
Q 001261 489 KPMPIQAQALPVIM---------SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSD 559 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il---------~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~ 559 (1112)
.+.|+|.+++.++. .+..+|+..++|+|||++.+..+...+... .........+|||||.. |+.||..+
T Consensus 55 ~Lr~hQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~qaia~l~~l~~~~-~~~~~~~~~~LIV~P~s-l~~qW~~E 132 (298)
T d1z3ix2 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQS-PDCKPEIDKVIVVSPSS-LVRNWYNE 132 (298)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCC-TTSSCSCSCEEEEECHH-HHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHHhc-ccccCCCCcEEEEccch-hhHHHHHH
Confidence 57899999999874 245689999999999987655444333332 22222334689999975 88999999
Q ss_pred HHHHhhhcCceEEEEeCCCChHHH--HHHH-h-----cCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhc
Q 001261 560 IRKFAKVMGVRCVPVYGGSGVAQQ--ISEL-K-----RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD 631 (1112)
Q Consensus 560 ~~~~~~~~~i~~~~~~gg~~~~~~--~~~l-~-----~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~ 631 (1112)
|.+++.. .+.++.++|+...... .... . ..+.|+|+|+..+...... ..-..+.+|||||+|++.+
T Consensus 133 i~k~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~sy~~~~~~~~~-----l~~~~~~~vI~DEaH~ikn 206 (298)
T d1z3ix2 133 VGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEV-----LHKGKVGLVICDEGHRLKN 206 (298)
T ss_dssp HHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTT-----TTTSCCCEEEETTGGGCCT
T ss_pred HHhhcCC-ceeEEEEeCchHHHHHHHHHHhhhccCccccceEEEEeecccccchhc-----ccccceeeeeccccccccc
Confidence 9998764 3445555655433221 1111 1 1357999999887654321 2223578999999999876
Q ss_pred cCChhHHHHHHHhcCCCCcEEEEecccc
Q 001261 632 MGFEPQITRIVQNIRPDRQTVLFSATFP 659 (1112)
Q Consensus 632 ~gf~~~i~~il~~~~~~~q~il~SAT~~ 659 (1112)
.+ ......+..+. ....+++|||+-
T Consensus 207 ~~--s~~~~a~~~l~-~~~rllLTGTPi 231 (298)
T d1z3ix2 207 SD--NQTYLALNSMN-AQRRVLISGTPI 231 (298)
T ss_dssp TC--HHHHHHHHHHC-CSEEEEECSSCS
T ss_pred cc--chhhhhhhccc-cceeeeecchHH
Confidence 43 33344444553 355789999974
|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=99.15 E-value=1.9e-10 Score=112.06 Aligned_cols=129 Identities=22% Similarity=0.283 Sum_probs=104.7
Q ss_pred EecccchhHHHHHHHHHhhhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEec
Q 001261 693 EVRPESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT 771 (1112)
Q Consensus 693 ~~~~~~~k~~~ll~~l~~~~~-~~~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT 771 (1112)
++.....|+..++..+..... +.+|||||.|++..+.|+..|...+++..+++......+ ..+-...-....|.|||
T Consensus 12 vf~T~~eK~~AIi~eV~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLnAk~~~~E--a~II~~Ag~~g~VtIAT 89 (175)
T d1tf5a4 12 IYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHERE--AQIIEEAGQKGAVTIAT 89 (175)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHH--HHHHTTTTSTTCEEEEE
T ss_pred EEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCceeehhhhHHHH--HHHHHhccCCCceeehh
Confidence 345567899999888876554 459999999999999999999999999999998764333 33333333345699999
Q ss_pred CcccccCCCC--------CccEEEEeCCCCCHhHHHHHhcccCCCCCccEEEEEecCCcc
Q 001261 772 SVAARGLDVK--------ELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823 (1112)
Q Consensus 772 ~v~~~GlDi~--------~v~~VI~~d~p~s~~~y~QriGR~gR~G~~g~~i~~~~~~d~ 823 (1112)
++++||.||. +=-+||.-..|.+.-...|..||+||-|.+|.+.+|++-+|.
T Consensus 90 NmAGRGtDikl~~~v~~~GGLhVI~t~~~~s~Rid~Ql~GR~gRQGdpGs~~~~~sleD~ 149 (175)
T d1tf5a4 90 NMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 149 (175)
T ss_dssp TTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred hHHHcCCCccchHHHHhCCCcEEEEeccCcchhHHHHHhcchhhhCCCcccEEEEEcCHH
Confidence 9999999986 345788888999999999999999999999999999976663
|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.07 E-value=2.9e-10 Score=119.42 Aligned_cols=148 Identities=17% Similarity=0.227 Sum_probs=97.0
Q ss_pred CChHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 489 KPMPIQAQALPVIM----SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il----~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
.+.|+|.+++..+. .+..+|+..++|.|||++.+..+...... +....+||||| ..+..||..++.+++
T Consensus 12 ~L~~yQ~~~v~~~~~~~~~~~g~iLaDe~GlGKT~~~i~~~~~~~~~------~~~~~~LIv~p-~~l~~~W~~e~~~~~ 84 (230)
T d1z63a1 12 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKE------NELTPSLVICP-LSVLKNWEEELSKFA 84 (230)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHT------TCCSSEEEEEC-STTHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHhhhcCCCEEEEeCCCCChHHHHHHhhhhhhhc------ccccccceecc-hhhhhHHHHHHHhhc
Confidence 57899999998764 35668999999999999876554443332 22346899999 567799999999886
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhccCChhHHHHHHHh
Q 001261 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQN 644 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~ 644 (1112)
... .+....+..... . ....+|+|+|+..+..... ..--.+.+||+||||++.+.. ......+..
T Consensus 85 ~~~--~~~~~~~~~~~~-~----~~~~~vvi~~~~~~~~~~~------l~~~~~~~vI~DEah~~k~~~--s~~~~~~~~ 149 (230)
T d1z63a1 85 PHL--RFAVFHEDRSKI-K----LEDYDIILTTYAVLLRDTR------LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKE 149 (230)
T ss_dssp TTS--CEEECSSSTTSC-C----GGGSSEEEEEHHHHTTCHH------HHTCCEEEEEEETGGGGSCTT--SHHHHHHHT
T ss_pred ccc--cceeeccccchh-h----ccCcCEEEeeHHHHHhHHH------HhcccceEEEEEhhhcccccc--hhhhhhhhh
Confidence 543 333322221111 0 1246899999987744321 112246889999999987643 233344444
Q ss_pred cCCCCcEEEEecccc
Q 001261 645 IRPDRQTVLFSATFP 659 (1112)
Q Consensus 645 ~~~~~q~il~SAT~~ 659 (1112)
+. ....+++|||+-
T Consensus 150 l~-a~~r~~LTgTPi 163 (230)
T d1z63a1 150 LK-SKYRIALTGTPI 163 (230)
T ss_dssp SC-EEEEEEECSSCS
T ss_pred hc-cceEEEEecchH
Confidence 43 345789999974
|
| >d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=98.75 E-value=8.9e-08 Score=98.80 Aligned_cols=169 Identities=18% Similarity=0.194 Sum_probs=123.4
Q ss_pred CCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 485 ~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+|. .|+++|..+--++..|+ |....||-|||++..+|++-..+. |..|-||+..--||..=..++..++
T Consensus 77 lG~-RhyDVQLiGgi~L~~G~--iaem~TGEGKTL~a~l~a~l~al~--------g~~vhvvTvNdyLA~RDae~m~~iy 145 (273)
T d1tf5a3 77 TGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT--------GKGVHVVTVNEYLASRDAEQMGKIF 145 (273)
T ss_dssp HSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred hce-EEehhHHHHHHHHHhhh--heeecCCCcchhHHHHHHHHHHhc--------CCCceEEecCccccchhhhHHhHHH
Confidence 453 68888888887877774 889999999999999998876554 5567788888999999999999999
Q ss_pred hhcCceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHH-HHHHhcCC---cccccCCceEEEeccchhhh-ccCChh---
Q 001261 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMI-DILCTSGG---KITNLRRVTYLVMDEADRMF-DMGFEP--- 636 (1112)
Q Consensus 565 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~-~~l~~~~~---~~~~l~~i~~vViDEah~~~-~~gf~~--- 636 (1112)
..+|+.|.++..+....+...... |+|+++|..-|. |+|..+-. ...-...+.+.||||+|.|+ |....|
T Consensus 146 ~~lGlsvg~~~~~~~~~~r~~~Y~--~di~Ygt~~e~~fDyLrd~~~~~~~~~~~r~~~~aIvDEvDsiliDeartplii 223 (273)
T d1tf5a3 146 EFLGLTVGLNLNSMSKDEKREAYA--ADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLII 223 (273)
T ss_dssp HHTTCCEEECCTTSCHHHHHHHHH--SSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEE
T ss_pred HHcCCCccccccccCHHHHHHHhh--CCceecchhhhhhhhcchhhhcChhhhccCCCCEEEEEcchhhhhhccCCceEe
Confidence 999999999998887776655554 899999998874 55543321 11224678899999999654 322111
Q ss_pred ----------HHHHHHHhcCCCCcEEEEeccccHHHHHHHHHh
Q 001261 637 ----------QITRIVQNIRPDRQTVLFSATFPRQVEILARKV 669 (1112)
Q Consensus 637 ----------~i~~il~~~~~~~q~il~SAT~~~~~~~l~~~~ 669 (1112)
.+..++ +.-.++.+||+|.-.....|...+
T Consensus 224 sg~~~~~a~it~q~~f---~~y~~l~gmtgta~~~~~e~~~iy 263 (273)
T d1tf5a3 224 SGQSMTLATITFQNYF---RMYEKLAGMTGTAKTEEEEFRNIY 263 (273)
T ss_dssp EEEEEEEEEEEHHHHH---TTSSEEEEEESCCGGGHHHHHHHH
T ss_pred ccCccchhhhhHHHHH---HHHHHHhCCccccHHHHHHHHhcc
Confidence 122333 333578889999866666564444
|
| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.50 E-value=7.8e-07 Score=87.59 Aligned_cols=128 Identities=23% Similarity=0.324 Sum_probs=101.1
Q ss_pred EecccchhHHHHHHHHHhhhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCeeeecCCCCHHHHHHHHHHhhcCC-ccEEEe
Q 001261 693 EVRPESDRFLRLLELLGEWYEKG-KILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNV-CNLLIA 770 (1112)
Q Consensus 693 ~~~~~~~k~~~ll~~l~~~~~~~-~vLIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~F~~g~-~~VLVa 770 (1112)
++.....|+..++..+...+..| +|||.+.|++..+.|...|.+.|+++.+|+..-.. .-..|+. ..|. -.|-||
T Consensus 12 Vy~T~~~K~~Avv~ei~~~h~~GqPVLVGT~SVe~SE~lS~lL~~~gi~h~vLNAK~he-rEAeIIA--qAG~~GaVTIA 88 (219)
T d1nkta4 12 IYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHE-QEATIIA--VAGRRGGVTVA 88 (219)
T ss_dssp EESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHH-HHHHHHH--TTTSTTCEEEE
T ss_pred EEcCHHHHHHHHHHHHHHHHhcCCCEEEeeCcHHHHHHHHHHHHHhccchhccchhhHH-HHHHHHH--hcccCCcEEee
Confidence 34566789999999888777655 99999999999999999999999999999996442 2223332 3454 469999
Q ss_pred cCcccccCCCCC----------------------------------------------------ccEEEEeCCCCCHhHH
Q 001261 771 TSVAARGLDVKE----------------------------------------------------LELVINFDAPNHYEDY 798 (1112)
Q Consensus 771 T~v~~~GlDi~~----------------------------------------------------v~~VI~~d~p~s~~~y 798 (1112)
|++|+||.||.= =-+||--....|----
T Consensus 89 TNMAGRGTDI~LGgn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIGTErHeSrRID 168 (219)
T d1nkta4 89 TNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRID 168 (219)
T ss_dssp ETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHH
T ss_pred ccccCCCCceeecCchhhhhHHHhhhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecccccccccc
Confidence 999999999931 2356666666677777
Q ss_pred HHHhcccCCCCCccEEEEEecCCcc
Q 001261 799 VHRVGRTGRAGRKGCAITFISEEDA 823 (1112)
Q Consensus 799 ~QriGR~gR~G~~g~~i~~~~~~d~ 823 (1112)
.|-.||+||-|.+|.+.+|++-+|.
T Consensus 169 nQLRGRsGRQGDPGsSrFflSLeDd 193 (219)
T d1nkta4 169 NQLRGRSGRQGDPGESRFYLSLGDE 193 (219)
T ss_dssp HHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred ccccccccccCCCccceeEEeccHH
Confidence 8999999999999999999986663
|
| >d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Eukaryotic type KH-domain (KH-domain type I) superfamily: Eukaryotic type KH-domain (KH-domain type I) family: Eukaryotic type KH-domain (KH-domain type I) domain: RNA splicing factor 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=2.5e-06 Score=77.92 Aligned_cols=77 Identities=18% Similarity=0.239 Sum_probs=59.9
Q ss_pred EEecCCCccc---hhhcccchhhhhHHhhhCCeEecccee--------eCCCCCCCCCCCceEEEEEeCCHHHHHHHHHH
Q 001261 1017 LEINDFPQNA---RWKVTHKETLGPISEWTGAAITTRGQY--------FPPSRIAGPGERKLYLFIEGPTEQSVKRAKAE 1085 (1112)
Q Consensus 1017 ~~INd~pq~~---R~~~t~~~~~~~i~~~tg~~i~~kG~~--------~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~ 1085 (1112)
|.++.||.-+ |-.=.++.|+.+|++.|||.|++||+- ++.+......+.|||++|+|.+...|+.|+.+
T Consensus 9 iP~~~~P~fNfvG~IlGPrG~t~K~Le~eTgckI~IrGrGS~kd~~~~~~~~~~~~~~~epLHv~I~a~~~~~~~~A~~~ 88 (122)
T d1k1ga_ 9 IPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQ 88 (122)
T ss_dssp CCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHHHHHHHHHH
T ss_pred cCCccCCCCCeeeeEeCCCCchHHHHHHHHCCEEEEEecCCcccccccccCCCCCCCCCCCceEEEecCChhhHHHHHHH
Confidence 4556666543 444578999999999999999999963 33333333357899999999999999999999
Q ss_pred HHHHHHHH
Q 001261 1086 LKRVLEDF 1093 (1112)
Q Consensus 1086 i~~~~~e~ 1093 (1112)
|..+|...
T Consensus 89 i~~ll~~~ 96 (122)
T d1k1ga_ 89 IRNILKQG 96 (122)
T ss_dssp HHHHHTTT
T ss_pred HHHHHHhc
Confidence 99999653
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=97.83 E-value=2.1e-05 Score=86.60 Aligned_cols=148 Identities=18% Similarity=0.191 Sum_probs=89.3
Q ss_pred CCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhc
Q 001261 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM 567 (1112)
Q Consensus 488 ~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~ 567 (1112)
....+.|.+|+..++.++-+||.|+.|+|||++.. .++..+... ....+..+++++||-..|..+.+.+......+
T Consensus 147 ~~~~~~Q~~A~~~al~~~~~vI~G~pGTGKTt~i~-~~l~~l~~~---~~~~~~~I~l~ApTgkAA~~L~e~~~~~~~~~ 222 (359)
T d1w36d1 147 SDEINWQKVAAAVALTRRISVISGGPGTGKTTTVA-KLLAALIQM---ADGERCRIRLAAPTGKAAARLTESLGKALRQL 222 (359)
T ss_dssp TTSCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHH-HHHHHHHHT---CSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHS
T ss_pred cccccHHHHHHHHHHcCCeEEEEcCCCCCceehHH-HHHHHHHHH---HhccCCeEEEecCcHHHHHHHHHHHHHHHhhc
Confidence 45578999999999999999999999999997642 333333322 12346789999999999988877766654443
Q ss_pred CceEEEEeCCCChHHHHHHHhcCCeEEEeCchHHHHHHHhcC---CcccccCCceEEEeccchhhhccCChhHHHHHHHh
Q 001261 568 GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSG---GKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQN 644 (1112)
Q Consensus 568 ~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~---~~~~~l~~i~~vViDEah~~~~~gf~~~i~~il~~ 644 (1112)
+........ ...-..|..+++....... ....+...+++||||||-.+. .+.+..++..
T Consensus 223 ~~~~~~~~~--------------~~~~~~t~~~ll~~~~~~~~~~~~~~~~l~~d~lIIDEaSmv~----~~l~~~ll~~ 284 (359)
T d1w36d1 223 PLTDEQKKR--------------IPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMID----LPMMSRLIDA 284 (359)
T ss_dssp SCCSCCCCS--------------CSCCCBTTTSCC-----------CTTSCCSCSEEEECSGGGCB----HHHHHHHHHT
T ss_pred Cchhhhhhh--------------hhhhhhHHHHHHhhhhcchHHHHhhhcccccceeeehhhhccC----HHHHHHHHHH
Confidence 321110000 0001112221111110000 011234467899999999642 4566778888
Q ss_pred cCCCCcEEEEecc
Q 001261 645 IRPDRQTVLFSAT 657 (1112)
Q Consensus 645 ~~~~~q~il~SAT 657 (1112)
+++..++|++.-.
T Consensus 285 ~~~~~~lILvGD~ 297 (359)
T d1w36d1 285 LPDHARVIFLGDR 297 (359)
T ss_dssp CCTTCEEEEEECT
T ss_pred hcCCCEEEEECCh
Confidence 8888888877654
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=97.01 E-value=0.00094 Score=66.88 Aligned_cols=131 Identities=21% Similarity=0.264 Sum_probs=73.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc--cchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH
Q 001261 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI 584 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~--PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~ 584 (1112)
++++|+||+|||++..-.+... ... +.++++++ ..|.-|. +.++.++..+++.+..+........-.
T Consensus 13 i~lvGp~GvGKTTTiaKLA~~~-~~~-------g~kV~lit~Dt~R~gA~---eQL~~~a~~l~v~~~~~~~~~~~~~~~ 81 (207)
T d1ls1a2 13 WFLVGLQGSGKTTTAAKLALYY-KGK-------GRRPLLVAADTQRPAAR---EQLRLLGEKVGVPVLEVMDGESPESIR 81 (207)
T ss_dssp EEEECCTTTTHHHHHHHHHHHH-HHT-------TCCEEEEECCSSCHHHH---HHHHHHHHHHTCCEEECCTTCCHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH-HHC-------CCcEEEEecccccchHH---HHHHHHHHhcCCccccccccchhhHHH
Confidence 5668999999998655544433 221 33455554 3454444 567777777888877666554433221
Q ss_pred HHHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhc-cCChhHHHHHHHhcCCCCcEEEEeccccHHHH
Q 001261 585 SELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQVE 663 (1112)
Q Consensus 585 ~~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~-~gf~~~i~~il~~~~~~~q~il~SAT~~~~~~ 663 (1112)
.... .+ ..+..+++|+||=|-+... ......+..+.....++.-+++++||......
T Consensus 82 ~~~~--------------~~--------~~~~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~ 139 (207)
T d1ls1a2 82 RRVE--------------EK--------ARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEAL 139 (207)
T ss_dssp HHHH--------------HH--------HHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHH
T ss_pred HHHH--------------HH--------HhhccCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHH
Confidence 1000 00 1122344555555544321 11234555666667777778889999887766
Q ss_pred HHHHHhc
Q 001261 664 ILARKVL 670 (1112)
Q Consensus 664 ~l~~~~~ 670 (1112)
..+..|+
T Consensus 140 ~~~~~f~ 146 (207)
T d1ls1a2 140 SVARAFD 146 (207)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665554
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=96.72 E-value=0.0048 Score=61.54 Aligned_cols=65 Identities=17% Similarity=0.197 Sum_probs=40.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEE-EEccc-hhHHHHHHHHHHHHhhhcCceEEEEeCCCChHH
Q 001261 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGL-IMAPT-RELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQ 582 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~L-Il~Pt-reLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~ 582 (1112)
++++||||+|||++..-.+. ++..+ |.+++ |-+-| |.-| .+.++.|+..+++.+.....+.....
T Consensus 12 i~lvGptGvGKTTTiAKLA~-~~~~~-------g~kV~lit~Dt~R~gA---~eQL~~~a~~l~v~~~~~~~~~d~~~ 78 (211)
T d2qy9a2 12 ILMVGVNGVGKTTTIGKLAR-QFEQQ-------GKSVMLAAGDTFRAAA---VEQLQVWGQRNNIPVIAQHTGADSAS 78 (211)
T ss_dssp EEEECCTTSCHHHHHHHHHH-HHHTT-------TCCEEEECCCTTCHHH---HHHHHHHHHHTTCCEECCSTTCCHHH
T ss_pred EEEECCCCCCHHHHHHHHHH-HHHHC-------CCcEEEEecccccccc---hhhhhhhhhhcCCcccccccCCCHHH
Confidence 55689999999987555443 33331 33444 44444 4333 36677888888988876666655443
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.67 E-value=0.0036 Score=64.80 Aligned_cols=99 Identities=17% Similarity=0.190 Sum_probs=73.1
Q ss_pred HHHHHHHhhhcCCeEEEEeCCHHHHHHHHHHHHh----cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecCccc-cc
Q 001261 703 RLLELLGEWYEKGKILIFVHSQEKCDALFRDLLK----HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA-RG 777 (1112)
Q Consensus 703 ~ll~~l~~~~~~~~vLIF~~s~~~~~~l~~~L~~----~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~v~~-~G 777 (1112)
.+..++.....+.++++.+++.--+.+.+..+.. .|+.+..+||+++..+|..++..+.+|+++|||+|-.+- ..
T Consensus 121 a~~a~~~~~~~g~q~~~m~Pt~~La~Qh~~~~~~~f~~~~~~v~~l~~~~~~~~r~~~~~~~~~g~~~iiIGThsl~~~~ 200 (264)
T d1gm5a3 121 AQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQED 200 (264)
T ss_dssp HHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHC
T ss_pred HHHHHHHHHhcccceeEEeehHhhhHHHHHHHHHhhhhccccceeeccccchHHHHHHHHHHHCCCCCEEEeehHHhcCC
Confidence 3333444444567999999999888887766655 478999999999999999999999999999999996554 57
Q ss_pred CCCCCccEEEEeCCCCCHhHHHHHhc
Q 001261 778 LDVKELELVINFDAPNHYEDYVHRVG 803 (1112)
Q Consensus 778 lDi~~v~~VI~~d~p~s~~~y~QriG 803 (1112)
+.+.++.+||.-.--. -.|.||-+
T Consensus 201 ~~f~~LglviiDEqH~--fgv~Qr~~ 224 (264)
T d1gm5a3 201 VHFKNLGLVIIDEQHR--FGVKQREA 224 (264)
T ss_dssp CCCSCCCEEEEESCCC--C-----CC
T ss_pred CCccccceeeeccccc--cchhhHHH
Confidence 8888999988644222 24666653
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=96.64 E-value=0.0039 Score=62.11 Aligned_cols=67 Identities=18% Similarity=0.165 Sum_probs=40.9
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEc-c-chhHHHHHHHHHHHHhhhcCceEEEEeCCCChHH
Q 001261 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA-P-TRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQ 582 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~-P-treLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~ 582 (1112)
+-++++||||+|||++..-.+. ++.. .|.++.+++ - .|.-|. +.++.|+..+++.+..+..+.....
T Consensus 7 ~vi~lvGptGvGKTTTiaKLA~-~~~~-------~g~kV~lit~Dt~R~gA~---eQL~~~a~~l~i~~~~~~~~~d~~~ 75 (207)
T d1okkd2 7 RVVLVVGVNGVGKTTTIAKLGR-YYQN-------LGKKVMFCAGDTFRAAGG---TQLSEWGKRLSIPVIQGPEGTDPAA 75 (207)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH-HHHT-------TTCCEEEECCCCSSTTHH---HHHHHHHHHHTCCEECCCTTCCHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH-HHHH-------CCCcEEEEEeccccccch---hhHhhcccccCceEEeccCCccHHH
Confidence 4567899999999987554433 3332 133444444 3 455555 4566677778888766655554433
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=96.63 E-value=0.00096 Score=71.14 Aligned_cols=70 Identities=19% Similarity=0.174 Sum_probs=50.8
Q ss_pred CChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHh
Q 001261 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~ 564 (1112)
+++|-|.+|+.. ....++|.|+.|||||.+.+.-+...+.... .....+|||++|+.+|..+...+..+.
T Consensus 1 ~L~~eQ~~av~~--~~~~~lI~g~aGTGKTt~l~~rv~~ll~~~~----~~~~~ILvlt~tn~a~~~i~~~~~~~~ 70 (306)
T d1uaaa1 1 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG----YQARHIAAVTFTNKAAREMKERVGQTL 70 (306)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHC----CCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CcCHHHHHHHhC--CCCCEEEEeeCCccHHHHHHHHHHHHHHhcC----CChhHEEEEeCcHHHHHHHHHHHHHhc
Confidence 478999999964 3456899999999999886655544443211 123479999999999998877776643
|
| >d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed frog (Xenopus laevis) [TaxId: 8355]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Eukaryotic type KH-domain (KH-domain type I) superfamily: Eukaryotic type KH-domain (KH-domain type I) family: Eukaryotic type KH-domain (KH-domain type I) domain: Quaking protein A (Xqua) species: African clawed frog (Xenopus laevis) [TaxId: 8355]
Probab=96.58 E-value=0.00044 Score=63.30 Aligned_cols=75 Identities=21% Similarity=0.238 Sum_probs=54.9
Q ss_pred EEecCCCccc---hhhcccchhhhhHHhhhCCeEeccceeeCCCC--------CC--CCCCCceEEEEEeCCH-----HH
Q 001261 1017 LEINDFPQNA---RWKVTHKETLGPISEWTGAAITTRGQYFPPSR--------IA--GPGERKLYLFIEGPTE-----QS 1078 (1112)
Q Consensus 1017 ~~INd~pq~~---R~~~t~~~~~~~i~~~tg~~i~~kG~~~~~~~--------~~--~~~~~~Lyl~ie~~~~-----~~ 1078 (1112)
|.+++||.-+ |-.=.++.|+.+|++.|||-|++||+----.. .+ ..-+-+||++|++.+. ..
T Consensus 8 IP~~~~P~~NfvG~IiGPrG~t~K~le~eTg~kI~IrGrGS~k~~~~~~~~~~~~~~~~~~epLHv~I~a~~~~~~a~~k 87 (134)
T d2bl5a1 8 VPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAELK 87 (134)
T ss_dssp CCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCCHHHHHH
T ss_pred CCCCCCCCCCeeEEEECCCCchHHHHHHHHCCEEEEEecCCCcCccccccccCCCCCcCCCCCCEEEEEecCcHHHHHHH
Confidence 3446666544 44557899999999999999999997532111 01 0124699999999874 46
Q ss_pred HHHHHHHHHHHHH
Q 001261 1079 VKRAKAELKRVLE 1091 (1112)
Q Consensus 1079 v~~A~~~i~~~~~ 1091 (1112)
|..|+.+|+.+|.
T Consensus 88 l~~A~~~I~~lL~ 100 (134)
T d2bl5a1 88 LKRAVEEVKKLLV 100 (134)
T ss_dssp HHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHcC
Confidence 8999999999984
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=96.53 E-value=0.0057 Score=61.13 Aligned_cols=65 Identities=18% Similarity=0.178 Sum_probs=39.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCCh
Q 001261 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGV 580 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~ 580 (1112)
++++||||+|||++..-.+.+ +..+ ....+||-+-|--.+. .++++.|+..+++.+.....+...
T Consensus 14 i~lvGptGvGKTTTiAKLAa~-~~~~------~~kV~lit~Dt~R~gA--~eQL~~~a~~l~i~~~~~~~~~d~ 78 (213)
T d1vmaa2 14 IMVVGVNGTGKTTSCGKLAKM-FVDE------GKSVVLAAADTFRAAA--IEQLKIWGERVGATVISHSEGADP 78 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHH-HHHT------TCCEEEEEECTTCHHH--HHHHHHHHHHHTCEEECCSTTCCH
T ss_pred EEEECCCCCCHHHHHHHHHHH-HHHC------CCceEEEeecccccch--hHHHHHHhhhcCccccccCCCCcH
Confidence 567899999999875544433 3332 1334555555433322 266777888888887765554443
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=96.11 E-value=0.0059 Score=65.24 Aligned_cols=71 Identities=14% Similarity=0.095 Sum_probs=52.7
Q ss_pred CChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhh
Q 001261 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~ 565 (1112)
.+++-|.++|.. .+..++|.|+.|||||++++--+...+.... -..-.+||+++|+.++..+...+.....
T Consensus 11 ~L~~eQ~~~v~~--~~g~~lV~g~aGSGKTt~l~~ri~~ll~~~~----~~p~~il~lt~t~~aa~~~~~~~~~~~~ 81 (318)
T d1pjra1 11 HLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH----VAPWNILAITFTNKAAREMRERVQSLLG 81 (318)
T ss_dssp TSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTC----CCGGGEEEEESSHHHHHHHHHHHHHHHG
T ss_pred hCCHHHHHHHhC--CCCCEEEEecCCccHHHHHHHHHHHHHHcCC----CCHHHeEeEeccHHHHHHHHHHHHhhcc
Confidence 477999999974 3456999999999999987665555554321 1123799999999999988887766543
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=96.07 E-value=0.017 Score=57.47 Aligned_cols=170 Identities=16% Similarity=0.147 Sum_probs=80.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccc-hhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHH
Q 001261 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT-RELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQIS 585 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Pt-reLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~ 585 (1112)
++++||||+|||++..-.+. ++... ....+||-+-| |.-|. +.++.|+..+++.+............+.
T Consensus 15 i~lvGptGvGKTTTiAKLA~-~~~~~------g~kV~lit~Dt~R~ga~---eQL~~~a~~l~v~~~~~~~~~~~~~~~~ 84 (211)
T d1j8yf2 15 IMLVGVQGTGKATTAGKLAY-FYKKK------GFKVGLVGADVYRPAAL---EQLQQLGQQIGVPVYGEPGEKDVVGIAK 84 (211)
T ss_dssp EEEECSCCC----HHHHHHH-HHHHT------TCCEEEEECCCSSHHHH---HHHHHHHHHHTCCEECCTTCCCHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH-HHHHC------CCceEEEEeeccccchh---HHHHHhccccCcceeecccchhhhHHHH
Confidence 56689999999987554443 33331 12344555543 43333 6677788888888766555444332221
Q ss_pred HHhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhhhcc---CChhHHHHHHHhcCCCCcEEEEeccccHHH
Q 001261 586 ELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDM---GFEPQITRIVQNIRPDRQTVLFSATFPRQV 662 (1112)
Q Consensus 586 ~l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~~~~---gf~~~i~~il~~~~~~~q~il~SAT~~~~~ 662 (1112)
. .+.. .....+++|+||=+=+.... .....+..+...+.+..-+++++||.....
T Consensus 85 ~-----------------a~~~-----~~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~ 142 (211)
T d1j8yf2 85 R-----------------GVEK-----FLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKA 142 (211)
T ss_dssp H-----------------HHHH-----HHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH
T ss_pred H-----------------HHHH-----hhccCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcch
Confidence 1 0000 01123344455444321100 012345666666777767788899876543
Q ss_pred HHHHHHhcC-CCeEEEEcCcccccCCccEEEEecccchhHHHHHHHHHhhhcCCeEEEEeCC
Q 001261 663 EILARKVLN-KPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHS 723 (1112)
Q Consensus 663 ~~l~~~~~~-~p~~i~i~~~~~~~~~i~q~~~~~~~~~k~~~ll~~l~~~~~~~~vLIF~~s 723 (1112)
...+..++. .++.- -++.-.++..+.-.++.++... +-++..++..
T Consensus 143 ~~~~~~~~~~~~~~~-------------lI~TKlDet~~~G~~l~~~~~~--~lPi~~it~G 189 (211)
T d1j8yf2 143 YDLASKFNQASKIGT-------------IIITKMDGTAKGGGALSAVAAT--GATIKFIGTG 189 (211)
T ss_dssp HHHHHHHHHHCTTEE-------------EEEECTTSCSCHHHHHHHHHTT--TCCEEEEECS
T ss_pred HHHHhhhhcccCcce-------------EEEecccCCCcccHHHHHHHHH--CcCEEEEeCC
Confidence 333332221 11110 1133345556666777766553 2344444444
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=95.97 E-value=0.028 Score=56.70 Aligned_cols=93 Identities=9% Similarity=0.087 Sum_probs=75.3
Q ss_pred chhHHHHHHHHHhhh-cCCeEEEEeCCHHHHHHHHHHHHh----cCCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC
Q 001261 698 SDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLK----HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS 772 (1112)
Q Consensus 698 ~~k~~~ll~~l~~~~-~~~~vLIF~~s~~~~~~l~~~L~~----~g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~ 772 (1112)
+.|....+..+.... .+.+++|.+|+..-+.+++..|.. .++.+..+||.++..++..++..+.+|..+|||.|-
T Consensus 87 sGKT~V~~~a~~~~~~~g~qv~~l~Pt~~La~Q~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~g~~~iviGth 166 (233)
T d2eyqa3 87 FGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTH 166 (233)
T ss_dssp TTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECT
T ss_pred CCcHHHHHHHHHHHHHcCCceEEEccHHHhHHHHHHHHHHHHhhCCCEEEeccCcccchhHHHHHHHHhCCCCCEEEeeh
Confidence 455555444444433 456899999999999999888876 478899999999999999999999999999999997
Q ss_pred ccc-ccCCCCCccEEEEeC
Q 001261 773 VAA-RGLDVKELELVINFD 790 (1112)
Q Consensus 773 v~~-~GlDi~~v~~VI~~d 790 (1112)
.+- ..+.++++.+||.-.
T Consensus 167 s~l~~~~~f~~LgLiIiDE 185 (233)
T d2eyqa3 167 KLLQSDVKFKDLGLLIVDE 185 (233)
T ss_dssp HHHHSCCCCSSEEEEEEES
T ss_pred hhhccCCccccccceeeec
Confidence 554 578889999988643
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.63 E-value=0.014 Score=58.22 Aligned_cols=40 Identities=18% Similarity=0.167 Sum_probs=26.0
Q ss_pred ChHHHHHHHHHH----HcCC---CEEEEcCCCChHHHHHHHHHHHHHh
Q 001261 490 PMPIQAQALPVI----MSGR---DCIGVAKTGSGKTLAFVLPMLRHIK 530 (1112)
Q Consensus 490 pt~iQ~~ai~~i----l~g~---dvii~a~TGsGKT~~~llp~l~~l~ 530 (1112)
.+|+|..++..+ ..++ -+|+.||.|+|||..+.. +...+.
T Consensus 3 ~yPw~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~-~a~~l~ 49 (207)
T d1a5ta2 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA-LSRYLL 49 (207)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH-HHHHHT
T ss_pred CCcccHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHH-HHHhcc
Confidence 346776666544 3443 389999999999975444 344443
|
| >d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Eukaryotic type KH-domain (KH-domain type I) superfamily: Eukaryotic type KH-domain (KH-domain type I) family: Eukaryotic type KH-domain (KH-domain type I) domain: Far upstream binding element, FBP species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.10 E-value=0.022 Score=47.07 Aligned_cols=71 Identities=23% Similarity=0.281 Sum_probs=52.9
Q ss_pred CeEEEEEecCCCccchhhc-ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q 001261 1012 HYEAELEINDFPQNARWKV-THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVL 1090 (1112)
Q Consensus 1012 ~~~~~~~INd~pq~~R~~~-t~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~ 1090 (1112)
.+..+|.|-.. .+.+.+ .++.++.+|.+.|||.|.+- + +.++...=++.|.| +..+|+.|+.+|..+|
T Consensus 7 ~~t~~i~IP~~--~~g~iIG~~G~~i~~I~~~tg~~I~i~-----~---~~~~~~~r~v~I~G-~~~~v~~A~~~I~~~i 75 (79)
T d1x4na1 7 VMTEEYKVPDG--MVGFIIGRGGEQISRIQQESGCKIQIA-----P---DSGGLPERSCMLTG-TPESVQSAKRLLDQIV 75 (79)
T ss_dssp CEEEEEEEEHH--HHHHHHCSSSHHHHHHHHHSCCEEEEC-----S---CCTTCSEEEEEEEE-CHHHHHHHHHHHHHHH
T ss_pred cEEEEEEEChH--hhcceECCCchhHHHHHHHhCCEEEEc-----C---CCCCCCceEEEEEe-CHHHHHHHHHHHHHHH
Confidence 45677776432 355555 57899999999999999983 1 23333445788999 6889999999999999
Q ss_pred HHH
Q 001261 1091 EDF 1093 (1112)
Q Consensus 1091 ~e~ 1093 (1112)
.|.
T Consensus 76 ~e~ 78 (79)
T d1x4na1 76 EKG 78 (79)
T ss_dssp HHT
T ss_pred Hcc
Confidence 874
|
| >d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Eukaryotic type KH-domain (KH-domain type I) superfamily: Eukaryotic type KH-domain (KH-domain type I) family: Eukaryotic type KH-domain (KH-domain type I) domain: HnRNP K, KH3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.99 E-value=0.029 Score=45.79 Aligned_cols=70 Identities=17% Similarity=0.211 Sum_probs=51.2
Q ss_pred eEEEEEecCCCccchhhcc-cchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHH
Q 001261 1013 YEAELEINDFPQNARWKVT-HKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLE 1091 (1112)
Q Consensus 1013 ~~~~~~INd~pq~~R~~~t-~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~~ 1091 (1112)
...+|.|-.- .+.+.+- ++.++.+|++.|||.|.+. .+.++..--.+.|.| +...|+.|+.+|.++|.
T Consensus 4 ~t~~i~VP~~--~vg~iIG~~G~~I~~I~~~sga~I~i~--------~~~~~~~~r~i~I~G-~~~~v~~A~~~I~~~i~ 72 (75)
T d1zzka1 4 ITTQVTIPKD--LAGSIIGKGGQRIKQIRHESGASIKID--------EPLEGSEDRIITITG-TQDQIQNAQYLLQNSVK 72 (75)
T ss_dssp EEEEEEEETT--TGGGGTCGGGHHHHHHHHHHCCEEEEC--------CTTSCSSEEEEEEEE-CHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEChH--hcCeeECCCCchHHHHHhhcCCeEEEc--------cCCCCCCceEEEEEe-CHHHHHHHHHHHHHHHH
Confidence 4556666433 4666664 5678999999999999983 122233333588899 68899999999999998
Q ss_pred HH
Q 001261 1092 DF 1093 (1112)
Q Consensus 1092 e~ 1093 (1112)
|.
T Consensus 73 e~ 74 (75)
T d1zzka1 73 QY 74 (75)
T ss_dssp HH
T ss_pred hc
Confidence 85
|
| >d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=94.93 E-value=0.014 Score=64.24 Aligned_cols=67 Identities=24% Similarity=0.422 Sum_probs=48.5
Q ss_pred CChHHHHHHHHHHHc----C-CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001261 489 KPMPIQAQALPVIMS----G-RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il~----g-~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
.|+--|=+||..+.. | +..++.|-||||||+++. .++... +..+|||+|+..+|.|+++.+..|
T Consensus 11 ~p~gDQP~aI~~l~~~l~~g~~~q~l~GltGS~ka~~iA-~l~~~~----------~rp~LVVt~n~~~A~qL~~dL~~~ 79 (413)
T d1t5la1 11 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTIS-NVIAQV----------NKPTLVIAHNKTLAGQLYSELKEF 79 (413)
T ss_dssp CCCTTHHHHHHHHHHHHHHTCSEEEEEECTTSCHHHHHH-HHHHHH----------TCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEeCCCCcHHHHHHH-HHHHHh----------CCCEEEEeCCHHHHHHHHHHHHHH
Confidence 355566666665553 4 568889999999997533 333332 234799999999999999999998
Q ss_pred hhh
Q 001261 564 AKV 566 (1112)
Q Consensus 564 ~~~ 566 (1112)
+..
T Consensus 80 l~~ 82 (413)
T d1t5la1 80 FPH 82 (413)
T ss_dssp CTT
T ss_pred cCC
Confidence 754
|
| >d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Eukaryotic type KH-domain (KH-domain type I) superfamily: Eukaryotic type KH-domain (KH-domain type I) family: Eukaryotic type KH-domain (KH-domain type I) domain: Vigilin species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.67 E-value=0.035 Score=46.03 Aligned_cols=71 Identities=18% Similarity=0.283 Sum_probs=54.7
Q ss_pred cCeEEEEEecCCCccchhhcccc-hhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHH
Q 001261 1011 EHYEAELEINDFPQNARWKVTHK-ETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRV 1089 (1112)
Q Consensus 1011 ~~~~~~~~INd~pq~~R~~~t~~-~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~ 1089 (1112)
+.+..+|.|..- .++..|-++ .++.+|.+.|||.|.+ | .++++.=.+.|.|+. ..|..|+.+|..+
T Consensus 8 ~~~t~~i~Ip~~--~~~~iIG~~G~~i~~I~~~tg~~I~~-----p-----~~~~~~~~v~I~G~~-~~v~~A~~~I~~i 74 (81)
T d2ctea1 8 TQASATVAIPKE--HHRFVIGKNGEKLQDLELKTATKIQI-----P-----RPDDPSNQIKITGTK-EGIEKARHEVLLI 74 (81)
T ss_dssp SCEEEEEECCTT--THHHHHCSSSCHHHHHHHHTTCCCBC-----C-----CTTSSCCEEEEEECH-HHHHHHHHHHHHH
T ss_pred CceEEEEEECHH--HHhhccCCCChhHHHHHHHhCCEEEE-----C-----CCCCCCCEEEEEeCH-HHHHHHHHHHHHH
Confidence 457888988743 677777665 9999999999999997 2 233333457788855 4899999999999
Q ss_pred HHHHH
Q 001261 1090 LEDFT 1094 (1112)
Q Consensus 1090 ~~e~~ 1094 (1112)
+.|..
T Consensus 75 v~e~~ 79 (81)
T d2ctea1 75 SAEQD 79 (81)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99864
|
| >d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Clostridium acetobutylicum [TaxId: 1488]
Probab=94.61 E-value=0.051 Score=50.21 Aligned_cols=39 Identities=18% Similarity=0.080 Sum_probs=26.7
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccch
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTR 550 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptr 550 (1112)
|.=-|++||+.||||.-++.-+-++.. .|.++|++-|..
T Consensus 7 G~l~lI~GpMfSGKTteLi~~~~~~~~--------~g~~vl~i~~~~ 45 (141)
T d1xx6a1 7 GWVEVIVGPMYSGKSEELIRRIRRAKI--------AKQKIQVFKPEI 45 (141)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH--------TTCCEEEEEEC-
T ss_pred eeEEEEEeccccHHHHHHHHHHHHhhh--------cCCcEEEEEecc
Confidence 344678999999999765554443322 256789999964
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=94.57 E-value=0.07 Score=49.14 Aligned_cols=87 Identities=11% Similarity=0.058 Sum_probs=50.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHH
Q 001261 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISE 586 (1112)
Q Consensus 507 vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~ 586 (1112)
-+++||+.||||.-++.-+.++.. .+.+++++-|...-- . +-.+. .+.|..
T Consensus 5 ~~i~GpMfsGKTteLi~~~~~~~~--------~~~kv~~ikp~~D~R---------~----~~~i~-s~~g~~------- 55 (139)
T d2b8ta1 5 EFITGPMFAGKTAELIRRLHRLEY--------ADVKYLVFKPKIDTR---------S----IRNIQ-SRTGTS------- 55 (139)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHH--------TTCCEEEEEECCCGG---------G----CSSCC-CCCCCS-------
T ss_pred EEEEccccCHHHHHHHHHHHHHHH--------CCCcEEEEEEccccc---------c----cceEE-cccCce-------
Confidence 478899999999765554443322 256789999974310 0 11111 111221
Q ss_pred HhcCCeEEEeCchHHHHHHHhcCCcccccCCceEEEeccchhh
Q 001261 587 LKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRM 629 (1112)
Q Consensus 587 l~~~~~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah~~ 629 (1112)
. ..+.+.+...+...+... .....+.+|.||||+-+
T Consensus 56 --~-~~~~~~~~~~~~~~~~~~----~~~~~~dvI~IDE~QFf 91 (139)
T d2b8ta1 56 --L-PSVEVESAPEILNYIMSN----SFNDETKVIGIDEVQFF 91 (139)
T ss_dssp --S-CCEEESSTHHHHHHHHST----TSCTTCCEEEECSGGGS
T ss_pred --e-eeEEeccchhhHHHHHhh----ccccCcCEEEechhhhc
Confidence 1 235555656666665433 23457899999999974
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=94.50 E-value=0.039 Score=55.02 Aligned_cols=45 Identities=18% Similarity=0.315 Sum_probs=27.5
Q ss_pred CCceEEEeccchhhhcc-CChhHHHHHHHhcC-CCCcEEEEeccccH
Q 001261 616 RRVTYLVMDEADRMFDM-GFEPQITRIVQNIR-PDRQTVLFSATFPR 660 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~-gf~~~i~~il~~~~-~~~q~il~SAT~~~ 660 (1112)
..+++||||++|.+... .+...+..++..+. ...++|+.|...|.
T Consensus 96 ~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~ 142 (213)
T d1l8qa2 96 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQ 142 (213)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGG
T ss_pred hhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcch
Confidence 45789999999987642 23344555666554 44555555554443
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=94.48 E-value=0.28 Score=49.28 Aligned_cols=49 Identities=14% Similarity=0.163 Sum_probs=30.7
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCC---CEEEEcCCCChHHHHHHHHHHHHHhc
Q 001261 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGR---DCIGVAKTGSGKTLAFVLPMLRHIKD 531 (1112)
Q Consensus 467 ~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~---dvii~a~TGsGKT~~~llp~l~~l~~ 531 (1112)
.+|.++-....+.+.|. .++.+++ .+|+.||+|+|||..+. .++..+..
T Consensus 9 ~~~~dlig~~~~~~~L~---------------~~i~~~~~~~~~Ll~Gp~G~GKtt~a~-~~~~~l~~ 60 (239)
T d1njfa_ 9 QTFADVVGQEHVLTALA---------------NGLSLGRIHHAYLFSGTRGVGKTSIAR-LLAKGLNC 60 (239)
T ss_dssp SSGGGSCSCHHHHHHHH---------------HHHHTTCCCSEEEEECSTTSSHHHHHH-HHHHHHHC
T ss_pred CCHHHccChHHHHHHHH---------------HHHHcCCCCeeEEEECCCCCcHHHHHH-HHHHHhcC
Confidence 46777766666655443 2233332 37889999999997644 44445443
|
| >d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Eukaryotic type KH-domain (KH-domain type I) superfamily: Eukaryotic type KH-domain (KH-domain type I) family: Eukaryotic type KH-domain (KH-domain type I) domain: Vigilin species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.38 E-value=0.04 Score=46.81 Aligned_cols=70 Identities=19% Similarity=0.252 Sum_probs=50.4
Q ss_pred eEEEEEecCCCccchhhc-ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHH
Q 001261 1013 YEAELEINDFPQNARWKV-THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLE 1091 (1112)
Q Consensus 1013 ~~~~~~INd~pq~~R~~~-t~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~~ 1091 (1112)
+..+|.|. +...+..| .++.++.+|.+.|||.|.+ |+ .+...=.+.|.|+ ...|+.|+.+|..++.
T Consensus 10 vt~~i~Vp--~~~~~~iIG~~G~~i~~I~~~tg~~I~~-----p~-----~~~~~~~v~I~G~-~~~V~~A~~~I~~~v~ 76 (91)
T d2ctka1 10 VTIEVEVP--FDLHRYVIGQKGSGIRKMMDEFEVNIHV-----PA-----PELQSDIIAITGL-AANLDRAKAGLLERVK 76 (91)
T ss_dssp EEEEEECC--HHHHHHHHCSSSHHHHHHHHHTCCEEEC-----CC-----TTTTCCEEEEEEC-HHHHHHHHHHHHHHHH
T ss_pred EEEEEEEC--HHHHhHhcCCCchhHHHHHHHhCCEEEE-----CC-----CCCCcceEEEECC-HHHHHHHHHHHHHHHH
Confidence 44555554 22344444 5678899999999999988 32 2333347889996 6799999999999998
Q ss_pred HHHH
Q 001261 1092 DFTN 1095 (1112)
Q Consensus 1092 e~~~ 1095 (1112)
+.-.
T Consensus 77 e~~~ 80 (91)
T d2ctka1 77 ELQA 80 (91)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7544
|
| >d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Eukaryotic type KH-domain (KH-domain type I) superfamily: Eukaryotic type KH-domain (KH-domain type I) family: Eukaryotic type KH-domain (KH-domain type I) domain: Vigilin species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.26 E-value=0.045 Score=45.71 Aligned_cols=72 Identities=11% Similarity=0.183 Sum_probs=52.6
Q ss_pred CeEEEEEecCCCccchhhcc-cchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q 001261 1012 HYEAELEINDFPQNARWKVT-HKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVL 1090 (1112)
Q Consensus 1012 ~~~~~~~INd~pq~~R~~~t-~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~ 1090 (1112)
.|..+|.|..- .+...+- ++.++.+|.+.|||.|.+ |+...+..+++. +.|.|+ .+.|..|+.+|..+|
T Consensus 9 ~~~~~i~Vp~~--~~~~iIG~~G~~i~~I~~~t~~~I~~-----~~~~~~~~~~~~--i~I~G~-~e~v~~A~~~I~~~i 78 (84)
T d2ctla1 9 SFKLSVTVDPK--YHPKIIGRKGAVITQIRLEHDVNIQF-----PDKDDGNQPQDQ--ITITGY-EKNTEAARDAILRIV 78 (84)
T ss_dssp TCEEEEECCTT--THHHHSCSSSCHHHHHHHHHTCEEEC-----CCTTTCSSCSSE--EEEESC-HHHHHHHHHHHHHHH
T ss_pred cEEEEEEECHH--HHhhhcCCCchhHHHHHHHhCCEEEE-----CCCCCCCCCcce--EEEECC-HHHHHHHHHHHHHHH
Confidence 47777776543 4555554 577899999999999987 333333334444 578887 778999999999999
Q ss_pred HHH
Q 001261 1091 EDF 1093 (1112)
Q Consensus 1091 ~e~ 1093 (1112)
.+.
T Consensus 79 ~e~ 81 (84)
T d2ctla1 79 GEL 81 (84)
T ss_dssp HHH
T ss_pred HhH
Confidence 875
|
| >d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Eukaryotic type KH-domain (KH-domain type I) superfamily: Eukaryotic type KH-domain (KH-domain type I) family: Eukaryotic type KH-domain (KH-domain type I) domain: Vigilin species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.18 E-value=0.075 Score=43.92 Aligned_cols=72 Identities=11% Similarity=0.149 Sum_probs=52.6
Q ss_pred cCeEEEEEecCCCccchhhcc-cchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHH
Q 001261 1011 EHYEAELEINDFPQNARWKVT-HKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRV 1089 (1112)
Q Consensus 1011 ~~~~~~~~INd~pq~~R~~~t-~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~ 1089 (1112)
+.+..+|.|.-- ..++.+- ++.++.+|.+.|||.|.+ |+...+. . =-+.|.| +...|.+|+.+|..|
T Consensus 8 ~~~t~~i~Vp~~--~~~~iIG~~G~~i~~I~~~tg~~I~~-----p~~~~~~--~--~~v~I~G-~~~~V~~A~~~I~~i 75 (81)
T d2ctma1 8 QMVSEDVPLDHR--VHARIIGARGKAIRKIMDEFKVDIRF-----PQSGAPD--P--NCVTVTG-LPENVEEAIDHILNL 75 (81)
T ss_dssp TCCCEEEECCTT--THHHHHCSSSCHHHHHHHHHTCEEEC-----CCTTCSC--T--TEEEEES-CHHHHHHHHHHHHHH
T ss_pred cCEEEEEEECHH--HHhhccCCCCccHHHHHHHhCCEEEe-----CCccCCC--C--CEEEEeC-CHHHHHHHHHHHHHH
Confidence 456677877654 5666665 458899999999999965 4322221 1 2478889 467899999999999
Q ss_pred HHHHH
Q 001261 1090 LEDFT 1094 (1112)
Q Consensus 1090 ~~e~~ 1094 (1112)
++|.+
T Consensus 76 ~~e~~ 80 (81)
T d2ctma1 76 EEEYL 80 (81)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99875
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.06 E-value=0.043 Score=55.92 Aligned_cols=49 Identities=12% Similarity=0.207 Sum_probs=30.7
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHH
Q 001261 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHI 529 (1112)
Q Consensus 468 ~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~llp~l~~l 529 (1112)
+|.++-....+.+.|..+--.. .....+|+.||.|+|||+++ ..+++.+
T Consensus 9 ~~~diig~~~~~~~L~~~~~~~------------~~~~~lll~Gp~G~GKTt~~-~~la~~l 57 (252)
T d1sxje2 9 SLNALSHNEELTNFLKSLSDQP------------RDLPHLLLYGPNGTGKKTRC-MALLESI 57 (252)
T ss_dssp SGGGCCSCHHHHHHHHTTTTCT------------TCCCCEEEECSTTSSHHHHH-HTHHHHH
T ss_pred CHHHccCcHHHHHHHHHHHHcC------------CCCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 5777777777777665431100 01235899999999999754 4445554
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=93.63 E-value=0.31 Score=49.37 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=29.5
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHH--HcCCCEEEEcCCCChHHHHH
Q 001261 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVI--MSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 465 pi~~~~~~~L~~~l~~~l~~~~~~~pt~iQ~~ai~~i--l~g~dvii~a~TGsGKT~~~ 521 (1112)
|-.+|.+++....+.+.|... ..+ ..+.+.+..+ ...+.+|+.||.|+|||+.+
T Consensus 4 p~~~~~di~G~~~~k~~l~~~--i~~-l~~~~~~~~~g~~~~~giLl~GppGtGKT~la 59 (247)
T d1ixza_ 4 PKVTFKDVAGAEEAKEELKEI--VEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 59 (247)
T ss_dssp CSCCGGGCCSCHHHHHHHHHH--HHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCcHHHHccHHHHHHHHHHH--HHH-HHCHHHHHHcCCCCCceEEEecCCCCChhHHH
Confidence 336899987666666655421 000 0001111111 01246999999999999753
|
| >d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.48 E-value=0.094 Score=47.83 Aligned_cols=37 Identities=14% Similarity=0.038 Sum_probs=25.2
Q ss_pred CEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccch
Q 001261 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTR 550 (1112)
Q Consensus 506 dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Ptr 550 (1112)
=-|++||+.||||.-++-.+.++ .. .|..++++-|..
T Consensus 4 L~li~GpMfsGKTt~Li~~~~~~-~~-------~g~~v~~ikp~~ 40 (133)
T d1xbta1 4 IQVILGPMFSGKSTELMRRVRRF-QI-------AQYKCLVIKYAK 40 (133)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH-HT-------TTCCEEEEEETT
T ss_pred EEEEEecccCHHHHHHHHHHHHH-HH-------cCCcEEEEeccc
Confidence 35789999999997644444333 22 256788998864
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.14 E-value=0.12 Score=50.58 Aligned_cols=51 Identities=16% Similarity=0.053 Sum_probs=31.6
Q ss_pred HHHHHHHHHc---CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccc
Q 001261 494 QAQALPVIMS---GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT 549 (1112)
Q Consensus 494 Q~~ai~~il~---g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~Pt 549 (1112)
|.+.+..+.. +..+|+.|+.|+|||..+...+ ..+.... ...|-++++.|.
T Consensus 2 ~~~~l~~~i~~~~~~~~l~~G~~g~gk~~~a~~l~-~~i~~~~----~~h~D~~~i~~~ 55 (198)
T d2gnoa2 2 QLETLKRIIEKSEGISILINGEDLSYPREVSLELP-EYVEKFP----PKASDVLEIDPE 55 (198)
T ss_dssp HHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHH-HHHHTSC----CCTTTEEEECCS
T ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHH-HHHhccc----cCCCCEEEEeCC
Confidence 5556665553 3579999999999997654333 4443321 124556777773
|
| >d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Eukaryotic type KH-domain (KH-domain type I) superfamily: Eukaryotic type KH-domain (KH-domain type I) family: Eukaryotic type KH-domain (KH-domain type I) domain: Far upstream binding element, FBP species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.07 E-value=0.069 Score=42.90 Aligned_cols=59 Identities=20% Similarity=0.240 Sum_probs=41.5
Q ss_pred chhhc-ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q 001261 1026 ARWKV-THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVL 1090 (1112)
Q Consensus 1026 ~R~~~-t~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~ 1090 (1112)
+.+.+ -.+.++.+|++.|||.|.+ ++...+.++..-=.+.|.| +...|++|..+|.++|
T Consensus 12 vg~IIGk~G~~Ik~I~~~sga~I~i-----~~~~~~~~~~~~r~v~I~G-~~~~v~~A~~~I~e~i 71 (71)
T d1j4wa2 12 TGLIIGKGGETIKSISQQSGARIEL-----QRNPPPNADPNMKLFTIRG-TPQQIDYARQLIEEKI 71 (71)
T ss_dssp HHHHHCGGGHHHHHHHHHHCCEEEE-----ECCCTTTSCTTEEEEEEEC-CHHHHHHHHHHHHHHC
T ss_pred cceEECCCCcChHHHHhhcCcEEEE-----eecCCCCCCCCeEEEEEEe-CHHHHHHHHHHHHhhC
Confidence 44444 3578999999999999997 3233333332222466999 6889999999998874
|
| >d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Eukaryotic type KH-domain (KH-domain type I) superfamily: Eukaryotic type KH-domain (KH-domain type I) family: Eukaryotic type KH-domain (KH-domain type I) domain: Neuro-oncological ventral antigen 2, nova-2, KH3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.76 E-value=0.097 Score=42.39 Aligned_cols=59 Identities=22% Similarity=0.193 Sum_probs=42.2
Q ss_pred chhhc-ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q 001261 1026 ARWKV-THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVL 1090 (1112)
Q Consensus 1026 ~R~~~-t~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~ 1090 (1112)
+-+.+ .++.++.+|++.|||.|.+. +...+.++..--.+.|.| +..+|+.|...|.++|
T Consensus 14 vg~iIGk~G~~Ik~I~~~sga~I~i~-----~~~~~~~~~~~r~v~I~G-~~~~v~~A~~~I~~~i 73 (74)
T d1dtja_ 14 VGAILGKGGKTLVEYQELTGARIQIS-----KKGEFLPGTRNRRVTITG-SPAATQAAQYLISQRV 73 (74)
T ss_dssp HHHHHCSTTHHHHHHHHHHCCEEEEC-----CTTCCSTTCCEEEEEEEE-SHHHHHHHHHHHHHHC
T ss_pred cceeECCCChhHHHHHHHcCCEEEEc-----cCCCCCCCCCceEEEEEe-CHHHHHHHHHHHHHHc
Confidence 44444 46789999999999999863 222233333233588999 5889999999998875
|
| >d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Eukaryotic type KH-domain (KH-domain type I) superfamily: Eukaryotic type KH-domain (KH-domain type I) family: Eukaryotic type KH-domain (KH-domain type I) domain: Far upstream binding element, FBP species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.47 E-value=0.084 Score=43.62 Aligned_cols=75 Identities=20% Similarity=0.214 Sum_probs=52.6
Q ss_pred CCcCeEEEEEecCCCccchhhcc-cchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHH
Q 001261 1009 MPEHYEAELEINDFPQNARWKVT-HKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELK 1087 (1112)
Q Consensus 1009 ~~~~~~~~~~INd~pq~~R~~~t-~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~ 1087 (1112)
.|..+..+|.|..- .+.-.|= ++.++.+|++.|||.|.+- +....+...++ .+.|.|. ...|.+|..+|.
T Consensus 4 ~~~~~~~~i~Vp~~--~~g~iIGk~G~~Ik~I~~~tga~I~i~----~~~~~~~~~~r--~v~I~G~-~~~v~~A~~~I~ 74 (81)
T d1x4ma1 4 GPGNAVQEIMIPAS--KAGLVIGKGGETIKQLQERAGVKMVMI----QDGPQNTGADK--PLRITGD-PYKVQQAKEMVL 74 (81)
T ss_dssp CCCCEEEEEEECHH--HHHHHSCSSSSHHHHHHHHHTSEEEEC----CSCCCSSCSCE--EEEEEEC-TTTHHHHHHHHH
T ss_pred CCccEEEEEEECHH--HcCeeECCCCchHHHHHHHhCCeEEEc----cCCCCCCCCce--EEEEEeC-HHHHHHHHHHHH
Confidence 35567788887532 4555554 5599999999999999872 11112222344 5778895 579999999999
Q ss_pred HHHHH
Q 001261 1088 RVLED 1092 (1112)
Q Consensus 1088 ~~~~e 1092 (1112)
++|.|
T Consensus 75 ~~i~e 79 (81)
T d1x4ma1 75 ELIRD 79 (81)
T ss_dssp HHHCC
T ss_pred HHHHh
Confidence 99864
|
| >d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Eukaryotic type KH-domain (KH-domain type I) superfamily: Eukaryotic type KH-domain (KH-domain type I) family: Eukaryotic type KH-domain (KH-domain type I) domain: Poly(RC)-binding protein 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.32 E-value=0.11 Score=41.67 Aligned_cols=51 Identities=24% Similarity=0.306 Sum_probs=39.9
Q ss_pred ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q 001261 1031 THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLED 1092 (1112)
Q Consensus 1031 t~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~~e 1092 (1112)
.++.++.+|.+.|||.|.+ ++. ...++ -+.|.| +...|.+|...|.++|+|
T Consensus 21 k~G~~I~~I~~~tga~I~i-----~~~---~~~er--~v~I~G-~~~~v~~A~~~I~~~l~E 71 (71)
T d2axya1 21 KKGESVKKMREESGARINI-----SEG---NCPER--IITLAG-PTNAIFKAFAMIIDKLEE 71 (71)
T ss_dssp GGGHHHHHHHHHHCCEEEE-----CSS---CCSEE--EEEEEE-CHHHHHHHHHHHHHHHHC
T ss_pred CCChhHHHHHHHhCCEEEE-----cCC---CCCcc--eEEEEE-CHHHHHHHHHHHHHHhcC
Confidence 4688999999999999986 221 11233 467899 688999999999999875
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=92.29 E-value=0.13 Score=52.61 Aligned_cols=53 Identities=21% Similarity=0.238 Sum_probs=29.2
Q ss_pred ccccccCCCCHHHHHHHHHC-C-CCCChHHHHHHHHHHHcCCCEEEEcCCCChHHHHH
Q 001261 466 IKTWHQTGLTSKIMETIRKL-N-YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 466 i~~~~~~~L~~~l~~~l~~~-~-~~~pt~iQ~~ai~~il~g~dvii~a~TGsGKT~~~ 521 (1112)
-.+|.+.+....+.+.|... . +..|..+|.-. +-..+.+|+.||+|+|||+.+
T Consensus 8 ~~t~~Di~Gl~~~k~~l~e~v~~~~~~~~~~~~g---~~~~~~iLL~GppGtGKT~la 62 (256)
T d1lv7a_ 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLG---GKIPKGVLMVGPPGTGKTLLA 62 (256)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHHhchHHHHHHHHHHHHHHHCHHHHHHcC---CCCCCeEEeeCCCCCCccHHH
Confidence 35788887777666655421 0 11111111110 112356999999999999753
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=92.27 E-value=0.12 Score=50.74 Aligned_cols=92 Identities=14% Similarity=0.237 Sum_probs=67.3
Q ss_pred CCCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHH---HHHHhc-CCeEEEeCchHHHHHHHhcCCcccc
Q 001261 539 DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ---ISELKR-GTEIVVCTPGRMIDILCTSGGKITN 614 (1112)
Q Consensus 539 ~~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~---~~~l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~ 614 (1112)
.|.+|.||||..+-...++..+++++. ++++.+++|..+..+. +..+.. ..+|+|||. .+... .+
T Consensus 30 rGgQvy~V~p~I~~~e~~~~~l~~~~p--~~~i~~lHGkm~~~eke~im~~F~~g~~~ILv~Tt-----vIEvG----iD 98 (211)
T d2eyqa5 30 RGGQVYYLYNDVENIQKAAERLAELVP--EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----IIETG----ID 98 (211)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHCT--TSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS-----TTGGG----SC
T ss_pred cCCeEEEEEcCccchhhHHHHHHHhCC--ceEEEEEEeccCHHHHHHHHHHHHcCCcceEEEeh-----hhhhc----cC
Confidence 478999999999888888888888765 5678888988876654 333443 489999995 33332 57
Q ss_pred cCCceEEEeccchhhhccCChhHHHHHHHhc
Q 001261 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNI 645 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~gf~~~i~~il~~~ 645 (1112)
+.+.+++||..|+++. ..++.++-..+
T Consensus 99 vpnA~~iiI~~a~rfG----LaQLhQLRGRV 125 (211)
T d2eyqa5 99 IPTANTIIIERADHFG----LAQLHQLRGRV 125 (211)
T ss_dssp CTTEEEEEETTTTSSC----HHHHHHHHTTC
T ss_pred CCCCcEEEEecchhcc----cccccccccee
Confidence 8899999999999853 44555554444
|
| >d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Eukaryotic type KH-domain (KH-domain type I) superfamily: Eukaryotic type KH-domain (KH-domain type I) family: Eukaryotic type KH-domain (KH-domain type I) domain: Tudor and KH domain containing protein, Tdrkh species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.25 E-value=0.13 Score=44.75 Aligned_cols=73 Identities=22% Similarity=0.161 Sum_probs=51.3
Q ss_pred eEEEEEecCCCccchhhc-ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHH
Q 001261 1013 YEAELEINDFPQNARWKV-THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLE 1091 (1112)
Q Consensus 1013 ~~~~~~INd~pq~~R~~~-t~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~~ 1091 (1112)
...+|.|-.. .+-+.| .++.++.+|++.|||.|.+- +++......++ .|.|.| +...|.+|+.+|..+|.
T Consensus 15 v~~~i~IP~~--~vg~vIGk~G~~Ik~I~~~tga~I~i~----~~~~~~~~~~r--~v~I~G-~~~~v~~A~~~I~~~i~ 85 (104)
T d1we8a_ 15 VFEQLSVPQR--SVGRIIGRGGETIRSICKASGAKITCD----KESEGTLLLSR--LIKISG-TQKEVAAAKHLILEKVS 85 (104)
T ss_dssp EEEEEEEETT--THHHHHTTTSHHHHHHHHHHCCEEEEC----CSSCCSSSSEE--EEEEEE-EHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECHH--HhcceECCCCcchHHHHHHcCCEEEEC----CCCCCCCCCcc--EEEEEe-CHHHHHHHHHHHHHHHh
Confidence 4566777443 454444 56899999999999999871 11111112233 578899 88899999999999997
Q ss_pred HHH
Q 001261 1092 DFT 1094 (1112)
Q Consensus 1092 e~~ 1094 (1112)
+.-
T Consensus 86 e~~ 88 (104)
T d1we8a_ 86 EDE 88 (104)
T ss_dssp HHH
T ss_pred CcH
Confidence 654
|
| >d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=91.95 E-value=0.11 Score=56.77 Aligned_cols=67 Identities=24% Similarity=0.452 Sum_probs=46.2
Q ss_pred CChHHHHHHHHHHH----cCCC-EEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHHHHHHHHHHHH
Q 001261 489 KPMPIQAQALPVIM----SGRD-CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (1112)
Q Consensus 489 ~pt~iQ~~ai~~il----~g~d-vii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa~Q~~~~~~~~ 563 (1112)
.|+--|-+||..++ .|.. +.+.|-+||+||++.. .++..+ +..+|||||+...|.+++..+..|
T Consensus 8 ~p~~dqp~aI~~l~~~L~~g~~~~~L~GlsgS~ka~~~A-~l~~~~----------~rp~LvVt~~~~~A~~l~~dL~~~ 76 (408)
T d1c4oa1 8 SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMA-KVIEAL----------GRPALVLAPNKILAAQLAAEFREL 76 (408)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHH-HHHHHH----------TCCEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHH-HHHHHh----------CCCEEEEeCCHHHHHHHHHHHHHh
Confidence 34445555565543 5554 6888999999996422 233321 224789999999999999999998
Q ss_pred hhh
Q 001261 564 AKV 566 (1112)
Q Consensus 564 ~~~ 566 (1112)
+..
T Consensus 77 l~~ 79 (408)
T d1c4oa1 77 FPE 79 (408)
T ss_dssp CTT
T ss_pred cCc
Confidence 654
|
| >d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Eukaryotic type KH-domain (KH-domain type I) superfamily: Eukaryotic type KH-domain (KH-domain type I) family: Eukaryotic type KH-domain (KH-domain type I) domain: Far upstream binding element, FBP species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.50 E-value=0.2 Score=40.35 Aligned_cols=54 Identities=20% Similarity=0.258 Sum_probs=41.1
Q ss_pred ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q 001261 1031 THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLEDF 1093 (1112)
Q Consensus 1031 t~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~~e~ 1093 (1112)
.++.++.+|++.|||.|.+... .+..+++ -+.|.|. ..+|+.|..+|.++|.+.
T Consensus 20 k~G~~I~~I~~~tga~I~i~~~------~~~~~~r--~v~I~G~-~~~v~~A~~~I~~~i~~~ 73 (74)
T d1j4wa1 20 RNGEMIKKIQNDAGVRIQFKPD------DGTTPER--IAQITGP-PDRAQHAAEIITDLLRSV 73 (74)
T ss_dssp GGGHHHHHHHHHHCCEEEEECC------TTSCSEE--EEEEEEC-HHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHcCCEEEeccC------CCCCCee--EEEEEeC-HHHHHHHHHHHHHHHHhc
Confidence 5789999999999999987432 1222233 3678885 789999999999999864
|
| >d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Eukaryotic type KH-domain (KH-domain type I) superfamily: Eukaryotic type KH-domain (KH-domain type I) family: Eukaryotic type KH-domain (KH-domain type I) domain: Poly(RC)-binding protein 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.31 E-value=0.18 Score=40.14 Aligned_cols=65 Identities=20% Similarity=0.246 Sum_probs=43.8
Q ss_pred EEEEecCCCccchhhc-ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q 001261 1015 AELEINDFPQNARWKV-THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVL 1090 (1112)
Q Consensus 1015 ~~~~INd~pq~~R~~~-t~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~ 1090 (1112)
.+|.|-.- .+-+.+ .++.++.+|.+.|||.|.+- +. .+..++ =.+.|.|. ...|+.|..+|...|
T Consensus 4 ~~i~VP~~--~vg~iIGk~G~~I~~I~~~tga~I~i~-----~~-~~~~~~--r~v~I~G~-~~~v~~A~~~I~~~i 69 (70)
T d1wvna1 4 HELTIPNN--LIGCIIGRQGANINEIRQMSGAQIKIA-----NP-VEGSSG--RQVTITGS-AASISLAQYLINARL 69 (70)
T ss_dssp EEEEEEGG--GHHHHHCGGGHHHHHHHHHHCCEEEEC-----CC-CTTCSE--EEEEEEEC-HHHHHHHHHHHHHHT
T ss_pred EEEEEChH--hcceeECCCChHHHHHHHHcCcEEEEc-----CC-CCCCCc--EEEEEEeC-HHHHHHHHHHHHHHc
Confidence 34444332 333433 46789999999999999772 21 222233 34779995 889999999998765
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=91.14 E-value=0.57 Score=47.20 Aligned_cols=17 Identities=24% Similarity=0.069 Sum_probs=14.2
Q ss_pred CCEEEEcCCCChHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAF 521 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~ 521 (1112)
+.+|+.||+|+|||+.+
T Consensus 41 ~~vLL~GppGtGKT~la 57 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALA 57 (246)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 35899999999999753
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=91.08 E-value=0.4 Score=51.84 Aligned_cols=27 Identities=15% Similarity=0.377 Sum_probs=18.9
Q ss_pred HHHHHHH--cCCCEEEEcCCCChHHHHHH
Q 001261 496 QALPVIM--SGRDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 496 ~ai~~il--~g~dvii~a~TGsGKT~~~l 522 (1112)
+++..+. ...++|++|+.|.|||...-
T Consensus 33 ~~~~~L~r~~k~n~llvG~~GvGKtaiv~ 61 (387)
T d1qvra2 33 RVIQILLRRTKNNPVLIGEPGVGKTAIVE 61 (387)
T ss_dssp HHHHHHHCSSCCCCEEEECTTSCHHHHHH
T ss_pred HHHHHHhcCCCCCCeEECCCCCCHHHHHH
Confidence 4444444 33579999999999997543
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=91.00 E-value=0.66 Score=47.26 Aligned_cols=18 Identities=28% Similarity=0.300 Sum_probs=15.1
Q ss_pred CCEEEEcCCCChHHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~l 522 (1112)
.++|++|+.|.|||...-
T Consensus 40 ~n~lLVG~~GvGKTalv~ 57 (268)
T d1r6bx2 40 NNPLLVGESGVGKTAIAE 57 (268)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CCcEEECCCCCcHHHHHH
Confidence 579999999999996533
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.93 E-value=0.43 Score=47.25 Aligned_cols=34 Identities=18% Similarity=0.405 Sum_probs=20.6
Q ss_pred cCCceEEEeccchhhhccCChhHHHHHHHhcCCCC
Q 001261 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDR 649 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~ 649 (1112)
.....+|||||+|.|... ....+..++.......
T Consensus 97 ~~~~kiiiiDe~d~~~~~-~~~~Ll~~le~~~~~~ 130 (227)
T d1sxjc2 97 SKGFKLIILDEADAMTNA-AQNALRRVIERYTKNT 130 (227)
T ss_dssp SCSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTE
T ss_pred CCCeEEEEEeccccchhh-HHHHHHHHhhhcccce
Confidence 345679999999987543 2334455555544433
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=90.65 E-value=0.015 Score=55.87 Aligned_cols=42 Identities=14% Similarity=0.125 Sum_probs=24.5
Q ss_pred cCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEecc
Q 001261 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSAT 657 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT 657 (1112)
.....+|++||++.....+ ...+..+...+.....+++++..
T Consensus 97 ~~~~~vlllDE~~~~~~~~-~~~~~~l~~~l~~~~~~il~~~h 138 (178)
T d1ye8a1 97 KDRRKVIIIDEIGKMELFS-KKFRDLVRQIMHDPNVNVVATIP 138 (178)
T ss_dssp HCTTCEEEECCCSTTGGGC-HHHHHHHHHHHTCTTSEEEEECC
T ss_pred hcCCCceeecCCCccchhh-HHHHHHHHHHhccCCCEEEEEEc
Confidence 4567899999998554322 23334444445544556666554
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=90.58 E-value=1.2 Score=42.10 Aligned_cols=76 Identities=17% Similarity=0.227 Sum_probs=56.7
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHH---HHHhc-CCeEEEeCchHHHHHHHhcCCccccc
Q 001261 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l 615 (1112)
|.++||.|+|+.-|..+...+.. .|+.+..++|+.+..+.. ..+.. ..+|+|+|.- +.. + .++
T Consensus 31 g~r~lvfc~t~~~~~~l~~~L~~----~Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~vLVaT~v-----~~~-G---iDi 97 (174)
T d1c4oa2 31 GERTLVTVLTVRMAEELTSFLVE----HGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINL-----LRE-G---LDI 97 (174)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCC-----CCT-T---CCC
T ss_pred CCcEEEEEcchhHHHHHHHHHHh----cCCceEEEecccchHHHHHHHHHHHCCCeEEEEeeee-----eee-e---ccC
Confidence 67899999999888776665554 699999999999876654 34444 4799999952 222 1 688
Q ss_pred CCceEEEeccchh
Q 001261 616 RRVTYLVMDEADR 628 (1112)
Q Consensus 616 ~~i~~vViDEah~ 628 (1112)
.++.+||+=.++.
T Consensus 98 p~V~~Vi~~~~~~ 110 (174)
T d1c4oa2 98 PEVSLVAILDADK 110 (174)
T ss_dssp TTEEEEEETTTTS
T ss_pred CCCcEEEEecccc
Confidence 8999999866665
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=90.42 E-value=0.12 Score=54.75 Aligned_cols=52 Identities=25% Similarity=0.296 Sum_probs=34.0
Q ss_pred HHHHHHHHH-HHcCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhH
Q 001261 492 PIQAQALPV-IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTREL 552 (1112)
Q Consensus 492 ~iQ~~ai~~-il~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreL 552 (1112)
+-+...+.. +..++++|++|+||||||+. +-.++..+ ....+++++--+.||
T Consensus 153 ~~~~~~l~~~v~~~~nili~G~tgSGKTT~-l~al~~~i--------~~~~rivtiEd~~El 205 (323)
T d1g6oa_ 153 EQAISAIKDGIAIGKNVIVCGGTGSGKTTY-IKSIMEFI--------PKEERIISIEDTEEI 205 (323)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESTTSSHHHH-HHHHGGGS--------CTTCCEEEEESSCCC
T ss_pred HHHHHHHHHHHHhCCCEEEEeeccccchHH-HHHHhhhc--------ccccceeeccchhhh
Confidence 444444443 45778999999999999964 44444432 124456777777787
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.88 E-value=0.24 Score=49.13 Aligned_cols=43 Identities=14% Similarity=0.168 Sum_probs=26.0
Q ss_pred cCCceEEEeccchhhhccCChhHHHHHHHhcCCCCcEEEEeccc
Q 001261 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF 658 (1112)
Q Consensus 615 l~~i~~vViDEah~~~~~gf~~~i~~il~~~~~~~q~il~SAT~ 658 (1112)
.....+||+||+|.|.... ...+...+........+++++...
T Consensus 99 ~~~~kviiiDe~d~~~~~~-~~~ll~~~e~~~~~~~~i~~~~~~ 141 (224)
T d1sxjb2 99 PGKHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFACNQS 141 (224)
T ss_dssp TTCCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEESCG
T ss_pred CcceEEEEEecccccchhH-HHHHhhhccccccceeeeeccCch
Confidence 3456799999999976532 223344455555555556655554
|
| >d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: ATP:corrinoid adenosyltransferase CobA species: Salmonella typhimurium [TaxId: 90371]
Probab=89.57 E-value=0.29 Score=45.57 Aligned_cols=51 Identities=14% Similarity=0.191 Sum_probs=39.6
Q ss_pred CCceEEEeccchhhhccCCh--hHHHHHHHhcCCCCcEEEEeccccHHHHHHH
Q 001261 616 RRVTYLVMDEADRMFDMGFE--PQITRIVQNIRPDRQTVLFSATFPRQVEILA 666 (1112)
Q Consensus 616 ~~i~~vViDEah~~~~~gf~--~~i~~il~~~~~~~q~il~SAT~~~~~~~l~ 666 (1112)
..+++||+||+-..++.|+. ..+..++...++..-+|++.-.+|+.+..++
T Consensus 93 ~~~dllILDEi~~Ai~~gli~~~~v~~ll~~rp~~~evVlTGr~~p~~L~e~A 145 (157)
T d1g5ta_ 93 PLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLA 145 (157)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHC
T ss_pred CccCEEeHHHHHHHHHcCCCCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhc
Confidence 45899999999998888865 4577778887777777777777888765543
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=89.00 E-value=0.97 Score=43.09 Aligned_cols=76 Identities=13% Similarity=0.239 Sum_probs=57.0
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHH---HHhc-CCeEEEeCchHHHHHHHhcCCccccc
Q 001261 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQIS---ELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~---~l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l 615 (1112)
+.++||.|+|+.-+..++..+. ..|+.+..++|+.+..+... .++. ..+|+|||.- +.. -.++
T Consensus 31 ~~~~iif~~~~~~~~~~~~~l~----~~g~~~~~~hg~~~~~eR~~~l~~Fr~g~~~vLVaTdv-----~~r----GiDi 97 (181)
T d1t5la2 31 NERTLVTTLTKKMAEDLTDYLK----EAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINL-----LRE----GLDI 97 (181)
T ss_dssp TCEEEEECSSHHHHHHHHHHHH----TTTCCEEEECSSCCHHHHHHHHHHHHHTSCSEEEESCC-----CSS----SCCC
T ss_pred CCeEEEEeehhhhhHHHHHHHH----hCCcceeEecCCccHHHHHHHHHHHHCCCCCEEEehhH-----HHc----cCCC
Confidence 5579999999998876655544 46999999999998776643 3333 5799999942 222 2688
Q ss_pred CCceEEEeccchh
Q 001261 616 RRVTYLVMDEADR 628 (1112)
Q Consensus 616 ~~i~~vViDEah~ 628 (1112)
..+.+||.-.+..
T Consensus 98 p~v~~VI~~d~p~ 110 (181)
T d1t5la2 98 PEVSLVAILDADK 110 (181)
T ss_dssp TTEEEEEETTTTS
T ss_pred CCCCEEEEecCCc
Confidence 8999999888775
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=89.00 E-value=0.72 Score=45.85 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=24.8
Q ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEcc
Q 001261 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP 548 (1112)
Q Consensus 504 g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~P 548 (1112)
|.-+++.|++|+|||+..+-.+.+.+ . .+..+++++-
T Consensus 26 gsl~li~G~pGsGKT~l~~qia~~~~-~-------~~~~~~~is~ 62 (242)
T d1tf7a2 26 DSIILATGATGTGKTLLVSRFVENAC-A-------NKERAILFAY 62 (242)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHH-T-------TTCCEEEEES
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHH-H-------hccccceeec
Confidence 45688899999999976555444433 2 2556677763
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.58 E-value=0.23 Score=49.63 Aligned_cols=15 Identities=27% Similarity=0.332 Sum_probs=13.4
Q ss_pred CEEEEcCCCChHHHH
Q 001261 506 DCIGVAKTGSGKTLA 520 (1112)
Q Consensus 506 dvii~a~TGsGKT~~ 520 (1112)
.+|+.||+|+|||+.
T Consensus 35 ~lll~Gp~G~GKTtl 49 (237)
T d1sxjd2 35 HMLFYGPPGTGKTST 49 (237)
T ss_dssp CEEEECSTTSSHHHH
T ss_pred eEEEECCCCCChHHH
Confidence 589999999999974
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.59 E-value=0.11 Score=53.21 Aligned_cols=16 Identities=38% Similarity=0.513 Sum_probs=14.2
Q ss_pred CCEEEEcCCCChHHHH
Q 001261 505 RDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~ 520 (1112)
+.+|+.||.|+|||+.
T Consensus 39 ~giLL~GppGtGKT~l 54 (258)
T d1e32a2 39 RGILLYGPPGTGKTLI 54 (258)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred ceeEEecCCCCCchHH
Confidence 5699999999999974
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.38 E-value=0.96 Score=45.24 Aligned_cols=18 Identities=33% Similarity=0.294 Sum_probs=14.7
Q ss_pred CCEEEEcCCCChHHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~l 522 (1112)
+.+|+.||+|+|||+++-
T Consensus 53 ~~lll~GPpG~GKTt~a~ 70 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAH 70 (253)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458999999999997533
|
| >d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Eukaryotic type KH-domain (KH-domain type I) superfamily: Eukaryotic type KH-domain (KH-domain type I) family: Eukaryotic type KH-domain (KH-domain type I) domain: Vigilin species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.03 E-value=0.4 Score=38.20 Aligned_cols=65 Identities=23% Similarity=0.333 Sum_probs=46.3
Q ss_pred eEEEEEecCCCccchhhcc-cchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q 001261 1013 YEAELEINDFPQNARWKVT-HKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVL 1090 (1112)
Q Consensus 1013 ~~~~~~INd~pq~~R~~~t-~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~ 1090 (1112)
...+|.|.. ...++.+- ++.++.+|++.|||.|.. |+. ..++. -+.|.|+ ...|++|+.+|.+|.
T Consensus 5 ~~~ei~V~~--~~~~~iIG~~G~~i~~I~~~tg~~I~i-----~~~---~~~~~--~v~I~G~-~~~v~~A~~~I~~i~ 70 (71)
T d1viga_ 5 DYVEINIDH--KFHRHLIGKSGANINRIKDQYKVSVRI-----PPD---SEKSN--LIRIEGD-PQGVQQAKRELLELA 70 (71)
T ss_dssp EEEEEEECS--SHHHHHTCSSCCHHHHHHHHTCCEEEC-----CCC---CSSSE--EEEEEES-SHHHHHHHHHHHHTC
T ss_pred EEEEEEECH--HHhcccCCCCCchHHHHHHHhCCEEEe-----CCC---CCCCC--EEEEECC-HHHHHHHHHHHHHHh
Confidence 455677664 46777775 567899999999999987 321 11222 3678885 678999999998763
|
| >d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Eukaryotic type KH-domain (KH-domain type I) superfamily: Eukaryotic type KH-domain (KH-domain type I) family: Eukaryotic type KH-domain (KH-domain type I) domain: Exosome complex RNA-binding protein 1, ECR1 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=86.99 E-value=0.44 Score=39.28 Aligned_cols=48 Identities=8% Similarity=0.150 Sum_probs=38.6
Q ss_pred ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q 001261 1031 THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLEDF 1093 (1112)
Q Consensus 1031 t~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~~e~ 1093 (1112)
..+.++..|++.|||.|.+ + .+. -+.|.|+ ...|+.|+..|..|+.|.
T Consensus 18 ~gG~~I~~I~~~tg~~I~i-----~-------~~g--~v~I~G~-~e~v~~A~~~I~~i~~ea 65 (84)
T d2ba0a3 18 KKGSMIKLLKSELDVQIVV-----G-------QNG--LIWVNGD-RRKVSIAEEAIYLIEQEA 65 (84)
T ss_dssp GGGHHHHHHHHHHTCEEEE-----C-------TTS--EEEEESC-HHHHHHHHHHHHHHHHCS
T ss_pred CcHHHHHHHHHHHCCEEEE-----C-------CCC--EEEEEeC-HHHHHHHHHHHHHHHHhc
Confidence 4688999999999999987 1 122 3678895 579999999999998774
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=86.79 E-value=0.45 Score=47.21 Aligned_cols=18 Identities=28% Similarity=0.265 Sum_probs=14.8
Q ss_pred CCEEEEcCCCChHHHHHH
Q 001261 505 RDCIGVAKTGSGKTLAFV 522 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~l 522 (1112)
..+|+.||+|+|||+++-
T Consensus 46 ~~lll~Gp~G~GKTtla~ 63 (231)
T d1iqpa2 46 PHLLFAGPPGVGKTTAAL 63 (231)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 358999999999997543
|
| >d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome related protein 1, FXR1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Eukaryotic type KH-domain (KH-domain type I) superfamily: Eukaryotic type KH-domain (KH-domain type I) family: Eukaryotic type KH-domain (KH-domain type I) domain: Fragile X mental retardation syndrome related protein 1, FXR1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.42 E-value=0.29 Score=39.84 Aligned_cols=65 Identities=18% Similarity=0.243 Sum_probs=47.9
Q ss_pred cCeEEEEEecCCCccchhhc-ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHH
Q 001261 1011 EHYEAELEINDFPQNARWKV-THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRV 1089 (1112)
Q Consensus 1011 ~~~~~~~~INd~pq~~R~~~-t~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~ 1089 (1112)
..|+.+|.|.. ..+.+.+ ..+.++.+|++.|||.|..- ++..=.+.|.|.|..+|++|+.+|..+
T Consensus 6 ~~~t~~i~Ip~--~~ig~vIG~gG~~I~~I~~~tGa~i~i~------------~~~~g~v~I~g~~~eav~~A~~~Ie~~ 71 (78)
T d2cpqa1 6 AAFHEEFVVRE--DLMGLAIGTHGSNIQQARKVPGVTAIEL------------DEDTGTFRIYGESADAVKKARGFLEFV 71 (78)
T ss_dssp CSEEEEEECCH--HHHHHHHTTTTHHHHHHHTSTTEEEEEE------------ETTTTEEEEEESSHHHHHHHHHHHSCC
T ss_pred CCceEEEEECH--HHHHHHcCCChHHHHHHHHhcCcEEEEe------------cCCCceEEEEECCHHHHHHHHHHHHHh
Confidence 35888888843 2344444 56899999999999998751 122235789999999999999999643
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=85.74 E-value=1.6 Score=40.27 Aligned_cols=71 Identities=15% Similarity=0.290 Sum_probs=50.7
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHH---HHhc-CCeEEEeCchHHHHHHHhcCCccccc
Q 001261 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQIS---ELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~---~l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l 615 (1112)
+.++||.|+|+.-|.+++..+.. .++.+..++|+.+..+... .+.. ...|+|||.- +..+ .++
T Consensus 28 ~~k~IIF~~s~~~~~~l~~~L~~----~g~~~~~~~~~~~~~~r~~~~~~f~~~~~~ilv~T~~-----~~~G----id~ 94 (155)
T d1hv8a2 28 EFYGLVFCKTKRDTKELASMLRD----IGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDV-----MSRG----IDV 94 (155)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHH----TTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTT-----HHHH----CCC
T ss_pred CCCEEEEECchHHHHHHHhhhcc----cccccccccccchhhhhhhhhhhhhcccceeeeehhH-----Hhhh----hhh
Confidence 45789999999988877666654 5888999999987766543 3333 4689999953 2222 577
Q ss_pred CCceEEEe
Q 001261 616 RRVTYLVM 623 (1112)
Q Consensus 616 ~~i~~vVi 623 (1112)
..+.+||.
T Consensus 95 ~~v~~Vi~ 102 (155)
T d1hv8a2 95 NDLNCVIN 102 (155)
T ss_dssp SCCSEEEE
T ss_pred ccCcEEEE
Confidence 77887774
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=85.37 E-value=2 Score=41.09 Aligned_cols=119 Identities=13% Similarity=0.115 Sum_probs=61.4
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHH-----HHHHHHHHHHhhhc---CceEEEEe-
Q 001261 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV-----QQIHSDIRKFAKVM---GVRCVPVY- 575 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa-----~Q~~~~~~~~~~~~---~i~~~~~~- 575 (1112)
.++|++|+.|.|||...--.+ +.+........-.+..++-|-+.+-+| -||...++.++... .-.+++++
T Consensus 44 ~n~lLvG~pGVGKTalv~~LA-~ri~~~~vp~~L~~~~i~~ld~~~LiAg~~~rG~~E~rl~~il~e~~~~~~~iILfID 122 (195)
T d1jbka_ 44 NNPVLIGEPGVGKTAIVEGLA-QRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFID 122 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHH-HHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEE
T ss_pred CCeEEEecCCcccHHHHHHHH-HHHHhCCCCHHHcCceEEEeeHHHHhccCCccHHHHHHHHHHHHHHhcCCCcEEEEcc
Confidence 589999999999997543333 333322111112244544444444332 25655565554332 11222221
Q ss_pred ------------CCCChHHHH-HHHhcCC--eEEEeCchHHHHHHHhcCCcccccCCceEEEeccch
Q 001261 576 ------------GGSGVAQQI-SELKRGT--EIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD 627 (1112)
Q Consensus 576 ------------gg~~~~~~~-~~l~~~~--~IvV~Tp~~L~~~l~~~~~~~~~l~~i~~vViDEah 627 (1112)
|+......+ ..|..|. -|.-|||..+..++..+. ...+++..|.|+|-.
T Consensus 123 eih~l~~~g~~~g~~d~~~~Lkp~L~rg~l~~IgatT~eey~~~~e~d~---aL~rrF~~I~V~Ep~ 186 (195)
T d1jbka_ 123 ELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDA---ALERRFQKVFVAEPS 186 (195)
T ss_dssp TGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHHHHHHTTTCH---HHHTTEEEEECCCCC
T ss_pred hHHHHhcCCCCCCcccHHHHHHHHHhCCCceEEecCCHHHHHHHHHcCH---HHHhcCCEeecCCCC
Confidence 122222222 2233342 455678888877765532 335678889998865
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=85.08 E-value=0.4 Score=52.21 Aligned_cols=38 Identities=16% Similarity=0.227 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHcCC--CEEEEcCCCChHHHHHHHHHHHHHh
Q 001261 492 PIQAQALPVIMSGR--DCIGVAKTGSGKTLAFVLPMLRHIK 530 (1112)
Q Consensus 492 ~iQ~~ai~~il~g~--dvii~a~TGsGKT~~~llp~l~~l~ 530 (1112)
+.|.+.|..++... -+|++||||||||++ +..++..+.
T Consensus 144 ~~~~~~l~~l~~~~~GliLvtGpTGSGKSTT-l~~~l~~~~ 183 (401)
T d1p9ra_ 144 AHNHDNFRRLIKRPHGIILVTGPTGSGKSTT-LYAGLQELN 183 (401)
T ss_dssp HHHHHHHHHHHTSSSEEEEEECSTTSCHHHH-HHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhceEEEEcCCCCCccHH-HHHHhhhhc
Confidence 44555555556443 367779999999975 445666654
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.05 E-value=1.3 Score=41.29 Aligned_cols=73 Identities=14% Similarity=0.245 Sum_probs=52.6
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHHH---Hh-cCCeEEEeCchHHHHHHHhcCCccccc
Q 001261 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISE---LK-RGTEIVVCTPGRMIDILCTSGGKITNL 615 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~---l~-~~~~IvV~Tp~~L~~~l~~~~~~~~~l 615 (1112)
..++||.|.++.-+.+++..+.. .++.+..++|+.+..+.... +. ....|+|||.- +.. -.++
T Consensus 27 ~~k~iIF~~s~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~l~~f~~~~~~iLv~Tdv-----~~r----GiDi 93 (162)
T d1fuka_ 27 VTQAVIFCNTRRKVEELTTKLRN----DKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDL-----LAR----GIDV 93 (162)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGG-----GTT----TCCC
T ss_pred CCcEEEEEEEEchHHHHHHHHhh----cCceEEEeccCCchhhHHHHHHHHhhcccceeecccc-----ccc----cccC
Confidence 45789999999999888776544 58899999999887766433 33 34689999953 222 2678
Q ss_pred CCceEEEecc
Q 001261 616 RRVTYLVMDE 625 (1112)
Q Consensus 616 ~~i~~vViDE 625 (1112)
..+++||.=.
T Consensus 94 ~~v~~VI~~d 103 (162)
T d1fuka_ 94 QQVSLVINYD 103 (162)
T ss_dssp CSCSEEEESS
T ss_pred CCceEEEEec
Confidence 8888887633
|
| >d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Eukaryotic type KH-domain (KH-domain type I) superfamily: Eukaryotic type KH-domain (KH-domain type I) family: Eukaryotic type KH-domain (KH-domain type I) domain: Exosome complex RNA-binding protein 1, ECR1 species: Aeropyrum pernix [TaxId: 56636]
Probab=84.03 E-value=0.7 Score=38.19 Aligned_cols=49 Identities=22% Similarity=0.207 Sum_probs=41.2
Q ss_pred ccchhhhhHHhhhCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q 001261 1031 THKETLGPISEWTGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRVLEDF 1093 (1112)
Q Consensus 1031 t~~~~~~~i~~~tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~~~e~ 1093 (1112)
..+.++..|++.|||.|++= ..| .+.|-|+++..+..|+..|+.|..|+
T Consensus 18 ~gG~~ik~i~~~t~~~I~I~----------d~G----~V~I~g~~~~~~~~A~~~I~~I~~ea 66 (87)
T d2z0sa2 18 RKMSMLKTLEEKTECKIFVA----------RNG----RIHLECPNEDLEAIAVMAIKIIDEEA 66 (87)
T ss_dssp GGGHHHHHHHHHHCCEEEEE----------TTT----EEEEECSCHHHHHHHHHHHHHHHHCS
T ss_pred CCCcHHHHHHHHHCCEEEEC----------CCc----EEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 56889999999999999881 012 68999999999999999999886654
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.93 E-value=0.55 Score=44.12 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=20.0
Q ss_pred CCEEEEcCCCChHHHHHHHHHHHHHhc
Q 001261 505 RDCIGVAKTGSGKTLAFVLPMLRHIKD 531 (1112)
Q Consensus 505 ~dvii~a~TGsGKT~~~llp~l~~l~~ 531 (1112)
+.+++.|+.|+|||+ ++..++..+..
T Consensus 2 k~v~ItG~~GtGKTt-l~~~i~~~l~~ 27 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTT-LIHKASEVLKS 27 (189)
T ss_dssp CCEEEESCCSSCHHH-HHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHH-HHHHHHHHHHH
Confidence 679999999999997 45555666554
|
| >d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Eukaryotic type KH-domain (KH-domain type I) superfamily: Eukaryotic type KH-domain (KH-domain type I) family: Eukaryotic type KH-domain (KH-domain type I) domain: Vigilin species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.73 E-value=1.5 Score=35.72 Aligned_cols=69 Identities=23% Similarity=0.243 Sum_probs=47.1
Q ss_pred CeEEEEEecCCCccchhhccc-chhhhhHHhh-hCCeEeccceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHH
Q 001261 1012 HYEAELEINDFPQNARWKVTH-KETLGPISEW-TGAAITTRGQYFPPSRIAGPGERKLYLFIEGPTEQSVKRAKAELKRV 1089 (1112)
Q Consensus 1012 ~~~~~~~INd~pq~~R~~~t~-~~~~~~i~~~-tg~~i~~kG~~~~~~~~~~~~~~~Lyl~ie~~~~~~v~~A~~~i~~~ 1089 (1112)
....+|.|.. ..+++.+-+ +.++.+|.+. |||.|.. |+ ++...=-+.|.| +...|..|+.+|..+
T Consensus 9 ~~t~~i~Vp~--~~~~~iIGk~G~~I~~I~~~~~~~~I~~-----~~-----~~~~~~~v~I~G-~~~~v~~A~~~I~~~ 75 (82)
T d2ctja1 9 IAEVEVSIPA--KLHNSLIGTKGRLIRSIMEECGGVHIHF-----PV-----EGSGSDTVVIRG-PSSDVEKAKKQLLHL 75 (82)
T ss_dssp SCCEEEECCH--HHHHHHHCSSSHHHHHHHHHHTSCEEEC-----CC-----TTTTCCEEEEES-CHHHHHHHHHHHHHH
T ss_pred cEEEEEEECH--HHHhhcCCCCCccHHHHHHHcCCcEEEE-----eC-----CCCCCceEEEeC-CHHHHHHHHHHHHHH
Confidence 4456666653 256666654 5688999865 6888763 32 122222467889 588999999999999
Q ss_pred HHHH
Q 001261 1090 LEDF 1093 (1112)
Q Consensus 1090 ~~e~ 1093 (1112)
+.|.
T Consensus 76 v~e~ 79 (82)
T d2ctja1 76 AEEK 79 (82)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 9875
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=81.64 E-value=0.62 Score=51.00 Aligned_cols=43 Identities=19% Similarity=0.263 Sum_probs=30.0
Q ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHhcCCCCCCCCCCcEEEEccchhHH
Q 001261 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~LIl~PtreLa 553 (1112)
..++++|+|+||||||..+ ..++..+... |..+||+=|.-+++
T Consensus 49 ~~~H~~I~G~tGsGKT~~l-~~li~~~~~~-------g~~~iiiD~kge~~ 91 (433)
T d1e9ra_ 49 EPRHLLVNGATGTGKSVLL-RELAYTGLLR-------GDRMVIVDPNGDML 91 (433)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHHT-------TCEEEEEEETTHHH
T ss_pred ccceEEEEeCCCCcHHHHH-HHHHHHHHhC-------CCCEEEEeCChhHH
Confidence 4568999999999999764 4444444432 45677888887654
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=81.26 E-value=1.9 Score=43.21 Aligned_cols=18 Identities=11% Similarity=0.067 Sum_probs=14.7
Q ss_pred cCCCEEEEcCCCChHHHH
Q 001261 503 SGRDCIGVAKTGSGKTLA 520 (1112)
Q Consensus 503 ~g~dvii~a~TGsGKT~~ 520 (1112)
.++.+++.|+.|+|||..
T Consensus 28 ~~~~i~i~G~~G~GKTsL 45 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSI 45 (283)
T ss_dssp CSSEEEEEESTTSSHHHH
T ss_pred cCCEEEEEcCCCCcHHHH
Confidence 346688899999999964
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=81.17 E-value=5.2 Score=38.44 Aligned_cols=71 Identities=13% Similarity=0.156 Sum_probs=54.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhc----CCCeeeecCCCCHHHHHHHHHHhhcCCccEEEecC-----cc-cccCCCCCcc
Q 001261 715 GKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VA-ARGLDVKELE 784 (1112)
Q Consensus 715 ~~vLIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~F~~g~~~VLVaT~-----v~-~~GlDi~~v~ 784 (1112)
..+||.|++..-|..+...+... ++.+..++|+.+.......+. ..+|||+|+ .+ ...+++.++.
T Consensus 73 ~~~lil~pt~~l~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~-----~~~IlV~TP~~l~~~l~~~~~~~~~l~ 147 (208)
T d1hv8a1 73 IEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-----NANIVVGTPGRILDHINRGTLNLKNVK 147 (208)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-----TCSEEEECHHHHHHHHHTTCSCTTSCC
T ss_pred cceEEEeeccccchhhhhhhhhhcccCCeEEEEeeCCCChHHHHHhcC-----CCCEEEEChHHHHHHHHcCCCCcccCc
Confidence 37999999999999988887664 678899999998877655442 368999994 23 3467889999
Q ss_pred EEEEeC
Q 001261 785 LVINFD 790 (1112)
Q Consensus 785 ~VI~~d 790 (1112)
+||.-.
T Consensus 148 ~lViDE 153 (208)
T d1hv8a1 148 YFILDE 153 (208)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 988633
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=80.90 E-value=2.3 Score=41.03 Aligned_cols=71 Identities=21% Similarity=0.321 Sum_probs=50.1
Q ss_pred CCcEEEEccchhHHHHHHHHHHHHhhhcCceEEEEeCCCChHHHHH---HHhc-CCeEEEeCchHHHHHHHhcCCccccc
Q 001261 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQIS---ELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (1112)
Q Consensus 540 ~~~~LIl~PtreLa~Q~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~---~l~~-~~~IvV~Tp~~L~~~l~~~~~~~~~l 615 (1112)
+.++||.|+|+..+..++..+.. .++.+..++|+.+..+... .+.. ...|+|+|.. +. .-.++
T Consensus 30 ~~~~IIF~~t~~~~~~l~~~l~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ilvaTd~-----~~----~GiD~ 96 (200)
T d1oywa3 30 GKSGIIYCNSRAKVEDTAARLQS----KGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVA-----FG----MGINK 96 (200)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTT-----SC----TTTCC
T ss_pred CCCEEEEEeeehhhHHhhhhhcc----CCceeEEecCCCcHHHHHHHHHHHhcccceEEEecch-----hh----hccCC
Confidence 56789999999988877665544 5888999999988765533 3333 4689999953 21 22577
Q ss_pred CCceEEEe
Q 001261 616 RRVTYLVM 623 (1112)
Q Consensus 616 ~~i~~vVi 623 (1112)
.++.+||.
T Consensus 97 p~v~~VI~ 104 (200)
T d1oywa3 97 PNVRFVVH 104 (200)
T ss_dssp TTCCEEEE
T ss_pred CCCCEEEE
Confidence 77887763
|