Citrus Sinensis ID: 001272

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110
MAPTRRSKSVNKRVAYTSEVASKKKAENADRSGKRKRKLSDMLGPQWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTMNRAYLSLPEGTASVVGLIAMMTDHYGILAGSDGEQESDEATGSSQKSQKCAGGKFQNPPPKGSDGPSPDLLNFQSAAPNYGCLSLLKKRRSGSRPRAVAKRTPRVPVSYSYDKDNTEKYISPIKQGLKPRLGSIDDDVAHEIALALTEASQRGGSLLVSQTPKRKRGKPSPVQKGSRTCDVSEMNSSKPHGSEMDEDGRELSLGSTDADNGYYSRDKIYLMDAETADTVEIQQKGKRYHSKKLKQEESVSNHLDDIKEACSGTEEGQDMVVMKGKFAMEIADEKNSRSYSKGSKKRSKKVLFKRDESSEFDALQTLADLSLMMPETTADTELSLQLKEEKPEAVNESKLKGNRSSTGVKDTAIKTSKLGKDCTDDVSVIPESEEGNHLTNSGNRTKRQKFLPIKLRMDATEELKKFISKGKRSLSASQSKHGKLVKPPEHTSSTDHEKEGNNSASSTAHVRTANQVNLPTKVRSRRKMNMQKLLIERDKMSSEDILKSSEDIFNDQNRTNSSFFDRAIKQKEQLSNCLSWYQVRVWCVSEWFYSTIDYPWFAKREFVEYLDHVGLSHVPRLTRVEWGVIRSSLGRPRRFSEQFLKEEKEKLNQYRESVRNHYSELRSGTKEGLPTDLARPLYVGQRIIAVHPRTREICDGSVLTVEHSRYRVQFDKRELGIEFVQDIDCMPLNPLENMPASLTRPNVAFGKFMDNFTELQMNGQPRERDIEGYMKFTPCENLETAYAPSHISPSTNYPINNLLQQHKGVSYTDSEVHVGSTGQAKEEDVLALSHLRHALDKKVASALFCLRQRNTYQGNTCLTGLKPMSGLGNLGGGLPNSFDHSAYQTPESGPHVVEVVESSRSKAQKMVDVAVQALSSLEKEGNGIERIEEAMDYVNNKLAGNDSGMPSIRSSTSADLVHSSRNSQDQQLETHTTNLLANSRAPDSTLNNSSDENSAHIPLELIAHCVAALFMIQRCTERDFPPADVALVLDSAVTSLQPCCSQNLPVYAEIQKCMGIIRNQILALIPTST
cccccccccccccccccHHHHHHccccccccccccHHcccccccccccHHHHHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccHHccccccccHHHHcccccccccccccccccccHHHHHccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHccccccccccccccccHHHHHHHHHHHHHHHccccccccEEEEEcccccccHHHHcccHHHHHHHHHcccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEEcccccccEEEEEEEEEcccEEEEEcccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccc
ccccccccEEcEEEEEEcccccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccHHHHccccccccccccccccccEEEEccccccHHccccccHHccccccccccccccHEEEEHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccHEEHHHHHHHcccHHHcccHHHHHHHHHHcccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHccccHHcccccEcccEEEEEccccccccccEEEEEccccEEEEEcccccccEEEcccHcccccccccccHHHHHccccccHHcccccccccccccccccccccccccccccHHcccccccccccccccHHHHHHHcccccHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHcHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccc
maptrrsksvnKRVAYTSEVASKkkaenadrsgkrkrklsdmlgpqwsKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTMNRAylslpegtASVVGLIAMMTDHYgilagsdgeqesdeatgssqksqkcaggkfqnpppkgsdgpspdllnfqsaapnygCLSLLkkrrsgsrpravakrtprvpvsysydkdntekyispikqglkprlgsiddDVAHEIALALTEASqrggsllvsqtpkrkrgkpspvqkgsrtcdvsemnsskphgsemdedgrelslgstdadngyysrdkiylmdaetaDTVEIQQKgkryhskklkqeeSVSNHLDDikeacsgteegqDMVVMKGKFAMEIAdeknsrsyskgskkrskkvlfkrdessefdALQTLAdlslmmpettaDTELSLQLkeekpeavnesklkgnrsstgvkdtaiktsklgkdctddvsvipeseegnhltnsgnrtkrqkflpikLRMDATEELKKFISKGKrslsasqskhgklvkppehtsstdhekegnnsasstaHVRTanqvnlptkVRSRRKMNMQKLLIERDKMSSEDILKSSEdifndqnrtnssfFDRAIKQKEQLSNCLSWYQVRVWCVSEWFystidypwfaKREFVEYLDHvglshvprltrVEWGVirsslgrprrfSEQFLKEEKEKLNQYRESVRNHYSElrsgtkeglptdlarplyvGQRIIavhprtreicdgsvltvEHSRYrvqfdkrelgiefvqdidcmplnplenmpasltrpnvafgKFMDNFTElqmngqprerdiegymkftpcenletayapshispstnypinnllqqhkgvsytdsevhvgstgqakEEDVLALSHLRHALDKKVASALFCLRqrntyqgntcltglkpmsglgnlggglpnsfdhsayqtpesgpHVVEVVESSRSKAQKMVDVAVQALSSLEKEGNGIERIEEAMDYVNnklagndsgmpsirsstsadlvhssrnsqdqqLETHTtnllansrapdstlnnssdensahiPLELIAHCVAALFMIQrcterdfppaDVALVLDSAVtslqpccsqnlpvYAEIQKCMGIIRNQILALIPTST
maptrrsksvnkrvaytsevaskkkaenadrsgkrkrklsdmlgpqwskeeLERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTMNRAYLSLPEGTASVVGLIAMMTDHYGILAGSDGEQESDEATGSSQKSQKCAGGKFQNPPPKGSDGPSPDLLNFQSAAPNYGCLSLlkkrrsgsrpravakrtprvpvsysydkdntekyispikqglkPRLGSIDDDVAHEIALALteasqrggsllvsqtpkrkrgkpspvqkgsrtcdvsemnsskphgsemdedgreLSLGSTDADNGYYSRDKIYLMDAETADTVEiqqkgkryhskklkqeesvsnhLDDIKEAcsgteegqdMVVMKGKFAMEIadeknsrsyskgskkrskkvlfkrdessefdALQTLADLSLMMPETTADTELSLQLKEEkpeavnesklkgnrsstgvkdtaiktsklgkdctddvsvipeseegnhltnsgnrtkrqkflpiKLRMDATEELKKFISkgkrslsasqskhgklvkppehtsstdhekegnnsasstahvrtanqvnlptkvrsrrKMNMQKLlierdkmsseDILKSSedifndqnrtnSSFFDRAIKQKEQLSNCLSWYQVRVWCVSEWFYSTIDYPWFAKREFVEYLDHVGlshvprltrvewgvirsslgrprrfseqfLKEEKEKLNQYRESVRNHYselrsgtkeglptdlarpLYVGQRIIAVHPRTREICdgsvltvehsryrvqfdkreLGIEFVQDIDCMPLNPLENMPASLTRPNVAFGKFMDNFTELQMNGQPRERDIEGYMKFTPCENLETAYAPSHISPSTNYPINNLLQQHKGVSYTDSEVHVGSTGQAKEEDVLALSHLRHALDKKVASALFCLRQRNTYQGNTCLTGLKPMSGLGNLGGGLPNSFDHSAYQTPESGPHVVEVVESSRSKAQKMVDVAVQALsslekegngIERIEEAMDYVNNKLAGNDSGMPSIRSSTSADLVHSSRNSQDQQLETHTtnllansrapdsTLNNSSDENSAHIPLELIAHCVAALFMIQRCTERDFPPADVALVLDSAVTSLQPCCSQNLPVYAEIQKCMGIIRNQILALIPTST
MAPTRRSKSVNKRVAYTSEVASKKKAENADRSGKRKRKLSDMLGPQWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTMNRAYLSLPEGTASVVGLIAMMTDHYGILAGSDGEQESDEATGSSQKSQKCAGGKFQNpppkgsdgpspdLLNFQSAAPNYGCLSLLKKRRSGSRPRAVAKRTPRVPVSYSYDKDNTEKYISPIKQGLKPRLGSIDDDVAHEIALALTEASQRGGSLLVSQTPKRKRGKPSPVQKGSRTCDVSEMNSSKPHGSEMDEDGRELSLGSTDADNGYYSRDKIYLMDAETADTVEIQQKGKRYHSKKLKQEESVSNHLDDIKEACSGTEEGQDMVVMKGKFAMEIADEknsrsyskgskkrskkvlfkrDESSEFDALQTLADLSLMMPETTADTELSLQLKEEKPEAVNESKLKGNRSSTGVKDTAIKTSKLGKDCTDDVSVIPESEEGNHLTNSGNRTKRQKFLPIKLRMDATEELKKFISKGKRSLSASQSKHGKLVKPPEHTSSTDHEKEGNNSASSTAHVRTANQVNLPTKVRSRRKMNMQKLLIERDKMSSEDILKSSEDIFNDQNRTNSSFFDRAIKQKEQLSNCLSWYQVRVWCVSEWFYSTIDYPWFAKREFVEYLDHVGLSHVPRLTRVEWGVIRSSLGRPRRFSEQFLKEEKEKLNQYRESVRNHYSELRSGTKEGLPTDLARPLYVGQRIIAVHPRTREICDGSVLTVEHSRYRVQFDKRELGIEFVQDIDCMPLNPLENMPASLTRPNVAFGKFMDNFTELQMNGQPRERDIEGYMKFTPCENLETAYAPSHISPSTNYPINNLLQQHKGVSYTDSEVHVGSTGQAKEEDVLALSHLRHALDKKVASALFCLRQRNTYQGNTCLTGLKPMSglgnlggglPNSFDHSAYQTPESGPHVVEVVESSRSKAQKMVDVAVQALSSLEKEGNGIERIEEAMDYVNNKLAGNDSGMPSIRSSTSADLVHSSRNSQDQQLETHTTNLLANSRAPDSTLNNSSDENSAHIPLELIAHCVAALFMIQRCTERDFPPADVALVLDSAVTSLQPCCSQNLPVYAEIQKCMGIIRNQILALIPTST
**************************************************ELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTMNRAYLSLPEGTASVVGLIAMMTDHYGILA**************************************************YGCLS*************************************************IDDDVAHEIALAL*****************************************************************YYSRDKIYLMDA**************************************************************************************************************************************************************************************************************************************************************************************************FDRAIKQKEQLSNCLSWYQVRVWCVSEWFYSTIDYPWFAKREFVEYLDHVGLSHVPRLTRVEWGVIRSSL*****************************************TDLARPLYVGQRIIAVHPRTREICDGSVLTVEHSRYRVQFDKRELGIEFVQDIDCMPLNPLENMPASLTRPNVAFGKFMDNFTEL**********IEGYMKFTPCENLETAYAPSHI***TNYPINNLLQQHKGVSYT***************DVLALSHLRHALDKKVASALFCLRQRNTYQGNTCLTGLKPMSGLGNL*****************************************************************************************************************************HIPLELIAHCVAALFMIQRCTERDFPPADVALVLDSAVTSLQPCCSQNLPVYAEIQKCMGIIRNQILALI****
***************************************************LERFYEAYRKYGKDWK**************EALFTMNRA*****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************SNCLSWYQVRVWCVSEWFYSTIDYPWFAKREFVEYLDHVGLSHVPRLTRVEWGVIRSSLGRPRRFSEQFLKEEKEKLNQYRESVRN*********KEGLPTDLARPLYVGQRIIAVHPRTREICDGSVLTVEHSRYRVQFDKRELGIEFVQDIDCMPLNPLENMPASLTRPNVAF******************************************************************************************DKKVASALFCLRQ*********************************************EVVESSRSKAQKMVDVAVQA*************IEEAMDYVNN***********************************************************HIPLELIAHCVAALFMIQRCTERDFPPADVALVLDSAVTSLQPCCSQNLPVYAEIQKCMGIIRNQILALIPT**
*************VAYTSE***********************LGPQWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTMNRAYLSLPEGTASVVGLIAMMTDHYGILAGSD**********************************SPDLLNFQSAAPNYGCLSLLKK****************VPVSYSYDKDNTEKYISPIKQGLKPRLGSIDDDVAHEIALALTEASQRGGSLL******************************************ELSLGSTDADNGYYSRDKIYLMDAETADTVEIQQKGKRYHSKKLKQEESVSNHLDDIKEACSGTEEGQDMVVMKGKFAMEIAD********************KRDESSEFDALQTLADLSLMMPETTADTELSLQL***********************DTAIKTSKLGKDCTDDVSVIPESEEGNHLTNSGNRTKRQKFLPIKLRMDATEELKKFI****************************************AHVRTANQVNLPTKVRSRRKMNMQKLLIERDKMSSEDILKSSEDIFNDQNRTNSSFFDRAIKQKEQLSNCLSWYQVRVWCVSEWFYSTIDYPWFAKREFVEYLDHVGLSHVPRLTRVEWGVIRSSLGRPRRFSEQFLKEEKEKLNQYRESVRNHYSELRSGTKEGLPTDLARPLYVGQRIIAVHPRTREICDGSVLTVEHSRYRVQFDKRELGIEFVQDIDCMPLNPLENMPASLTRPNVAFGKFMDNFTELQMNGQPRERDIEGYMKFTPCENLETAYAPSHISPSTNYPINNLLQQHKGVSYTDSEVHVGSTGQAKEEDVLALSHLRHALDKKVASALFCLRQRNTYQGNTCLTGLKPMSGLGNLGGGLPNSFDHSAYQTPESGPHVVEVVESSRSKAQKMVDVAVQALSSLEKEGNGIERIEEAMDYVNNKLAGNDSGMP**********************ETHTTNLLANSRAPDSTLNNSSDENSAHIPLELIAHCVAALFMIQRCTERDFPPADVALVLDSAVTSLQPCCSQNLPVYAEIQKCMGIIRNQILALIPTST
*******KSVNKRVAYTSEV*************K*KRKLSDMLGPQWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTMNRAYLSLPEGTASVVGLIAMMTDHYGI*******************************************************L***************AKRTPRVPVSYSYDKDN**KY***************DDDVAHEIALALTEAS***************************************************************************************************************************************************************FDA*******SLM***********************************************************************************************************************************************************************************************FDRAIKQKEQLSNCLSWYQVRVWCVSEWFYSTIDYPWFAKREFVEYLDHVGLSHVPRLTRVEWGVIRSSLGRPRRFSEQFLKEEKEKLNQYRESVRNHYSELRSGTKEGLPTDLARPLYVGQRIIAVHPRTREICDGSVLTVEHSRYRVQFDKRELGIEFVQDIDCMPLNPLENMPASLTRPNVAFGKFMDNFTELQMNG**RE*DIEGYMKFTPCENLE***APSHISPSTNYPINNLLQQHKG***************AKEEDVLALSHLRHALDKKVASALFCLRQRNTYQGNTCLTGLKP*************************GPHVVEVVESSRSKAQKMVDVAVQALSSLEKEGNGIERIEEAMDYVNN*********************************************************SAHIPLELIAHCVAALFMIQRCTERDFPPADVALVLDSAVTSLQPCCSQNLPVYAEIQKCMGIIRNQILALIPT**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAPTRRSKSVNKRVAYTSEVASKKKAENADRSGKRKRKLSDMLGPQWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTMNRAYLSLPEGTASVVGLIAMMTDHYGILAGSDGEQESDEATGSSQKSQKCAGGKFQNPPPKGSDGPSPDLLNFQSAAPNYGCLSLLKKRRSGSRPRAVAKRTPRVPVSYSYDKDNTEKYISPIKQGLKPRLGSIDDDVAHEIALALTEASQRGGSLLVSQTPKRKRGKPSPVQKGSRTCDVSEMNSSKPHGSEMDEDGRELSLGSTDADNGYYSRDKIYLMDAETADTVEIQQKGKRYHSKKLKQEESVSNHLDDIKEACSGTEEGQDMVVMKGKFAMEIADEKNSRSYSKGSKKRSKKVLFKRDESSEFDALQTLADLSLMMPETTADTELSLQLKEEKPEAVNESKLKGNRSSTGVKDTAIKTSKLGKDCTDDVSVIPESEEGNHLTNSGNRTKRQKFLPIKLRMDATEELKKFISKGKRSLSASQSKHGKLVKPPEHTSSTDHEKEGNNSASSTAHVRTANQVNLPTKVRSRRKMNMQKLLIERDKMSSEDILKSSEDIFNDQNRTNSSFFDRAIKQKEQLSNCLSWYQVRVWCVSEWFYSTIDYPWFAKREFVEYLDHVGLSHVPRLTRVEWGVIRSSLGRPRRFSEQFxxxxxxxxxxxxxxxxxxxxxLRSGTKEGLPTDLARPLYVGQRIIAVHPRTREICDGSVLTVEHSRYRVQFDKRELGIEFVQDIDCMPLNPLENMPASLTRPNVAFGKFMDNFTELQMNGQPRERDIEGYMKFTPCENLETAYAPSHISPSTNYPINNLLQQHKGVSYTDSEVHVGSTGQAKEEDVLALSHLRHALDKKVASALFCLRQRNTYQGNTCLTGLKPMSGLGNLGGGLPNSFDHSAYQTPESGPHVVEVVESSRSKAQKMVDVAVQALSSLEKEGNGIERIEEAMDYVNNKLAGNDSGMPSIRSSTSADLVHSSRNSQDQQLETHTTNLLANSRAPDSTLNNSSDENSAHIPLELIAHCVAALFMIQRCTERDFPPADVALVLDSAVTSLQPCCSQNLPVYAEIQKCMGIIRNQILALIPTST
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1110 2.2.26 [Sep-21-2011]
Q6A3321132 Protein ALWAYS EARLY 3 OS yes no 0.940 0.922 0.464 0.0
Q6A3331051 Protein ALWAYS EARLY 2 OS no no 0.890 0.941 0.400 0.0
Q6A331971 Protein ALWAYS EARLY 1 OS no no 0.834 0.953 0.345 1e-149
Q5RHQ8543 Protein lin-9 homolog OS= yes no 0.163 0.333 0.35 1e-19
Q8C735542 Protein lin-9 homolog OS= yes no 0.153 0.313 0.343 5e-19
Q4R8N2542 Protein lin-9 homolog OS= N/A no 0.153 0.313 0.333 2e-18
Q5TKA1542 Protein lin-9 homolog OS= yes no 0.153 0.313 0.333 2e-18
P30630644 Protein lin-9 OS=Caenorha yes no 0.155 0.268 0.324 3e-14
>sp|Q6A332|ALY3_ARATH Protein ALWAYS EARLY 3 OS=Arabidopsis thaliana GN=ALY3 PE=1 SV=1 Back     alignment and function desciption
 Score =  919 bits (2375), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 556/1196 (46%), Positives = 727/1196 (60%), Gaps = 152/1196 (12%)

Query: 1    MAPTRRSKSVNKRVAYTSEVASKKKAENADRSGKRKRKLSDMLGPQWSKEELERFYEAYR 60
            MAP+R  KS  K+      V+  K  E+  ++ +RKRKLSDMLGPQWSKEELERFYE YR
Sbjct: 1    MAPSRSKKSKYKKKPRAKAVSPHKDEESMSKTKQRKRKLSDMLGPQWSKEELERFYEGYR 60

Query: 61   KYGKDWKKIAAAVRNRTAEMVEALFTMNRAYLSLPEGTASVVGLIAMMTDHYGIL-AGSD 119
            K+GK+WKK+A  V +R+AEMVEAL+TMN+AYLSLPEGTASVVGL AMMTDHY +L  GSD
Sbjct: 61   KFGKEWKKVAGFVHSRSAEMVEALYTMNKAYLSLPEGTASVVGLTAMMTDHYSVLHGGSD 120

Query: 120  GEQESDEATGSSQKSQKCAGGKFQNPPPKGSDGPSPDLLNFQSAAPNYGCLSLLKKRRSG 179
             EQE++E   + + + K +  K  + P  G +G S D L F+S++   G +  LKKRR+ 
Sbjct: 121  SEQENNEGIETPRSAPKRSRVKSSDHPSIGLEGLS-DRLQFRSSS---GFMPSLKKRRTE 176

Query: 180  SRPRAVAKRTPRVPVSYSYDKDNTEKYISPIKQGLKPRLGSIDDDVAHEIALALTEASQR 239
            + PRAV KRTPR+P+SY+ +KD  E+Y+SP+K+GL  +    DDD+ HEIALAL EASQR
Sbjct: 177  TMPRAVGKRTPRIPISYTLEKDTRERYLSPVKRGLNQKGDDTDDDMEHEIALALAEASQR 236

Query: 240  GGSLLVSQTPKRKRGKPSPVQKGSRTCDVSEMNSSKPHGSEMDEDGRELSLGSTDADNGY 299
            GGS   S TP RK     P +KG R     ++  +K H ++M++   E SLGST+ADN  
Sbjct: 237  GGSTKNSHTPNRKAKMYPPDKKGERMRADIDLAIAKLHATDMEDVRCEPSLGSTEADNAD 296

Query: 300  YSRDKIYLMDAETADTVEIQQKGKRYHSKKLKQEESVSNHLDDIKEACSGTEEGQDMVVM 359
            YS  +  L   E +  VE QQKG+ Y+ +++  +E      +D KEACSGT+E   +   
Sbjct: 297  YSGGRNDLTHGEGSSAVEKQQKGRTYYRRRVGIKE------EDAKEACSGTDEAPSLGAP 350

Query: 360  KGKFAMEIADEKNSRSYSKGSKKRSKKVLFKRDESSEFDALQTLADLSLMMPETTADTEL 419
              KF  E   +    +Y K S+++SKK LF  DE +  DAL TLADLSLMMPET  DTE 
Sbjct: 351  DEKFEQEREGKALKFTY-KVSRRKSKKSLFTADEDTACDALHTLADLSLMMPETATDTES 409

Query: 420  SLQLKEEKPEAVNESKLKGNRSSTGVKDTAIKTSKLGKDCTDDVSVIPESEEGNHLTNSG 479
            S+Q +E+K      S  KG   ++  K ++++ SK  +  ++D+   PE E  +  ++S 
Sbjct: 410  SVQAEEKKAGEAYVSDFKGTDPASMSKSSSLRNSKQRRYGSNDL-CNPELERKSP-SSSL 467

Query: 480  NRTKRQKFLPIKLRMDATE-------------------ELKKFISKGKRSLSASQSKHGK 520
             + +RQK LP K+R +  +                   E  K + +GKRS S   S   K
Sbjct: 468  IQKRRQKALPAKVRENVLKDELAASSQVIEPCNSKGIGEEYKPVGRGKRSASIRNSHEKK 527

Query: 521  LVKPPEHTSSTDHEKEGNNSASSTAHVRTANQVNLPTKVRSRRKMNMQKLLIERDKMSSE 580
              K  +HTSS+++  E + SA S A ++   QVNLPTKVRSRRK+  +K L   D   SE
Sbjct: 528  SAKSHDHTSSSNNIVEEDESAPSNAVIK--KQVNLPTKVRSRRKIVTEKPLTIDDGKISE 585

Query: 581  DILKSSEDIFNDQNRTNSSFFDRAIKQKEQLSNCLSWYQVRVWCVSEWFYSTIDYPWFAK 640
             I                          E+ S+C+S ++ R WC+ EWFYS IDYPWFA+
Sbjct: 586  TI--------------------------EKFSHCISSFRARRWCIFEWFYSAIDYPWFAR 619

Query: 641  REFVEYLDHVGLSHVPRLTRVEWGVIRSSLGRPRRFSEQFLKEEKEKLNQYRESVRNHYS 700
            +EFVEYLDHVGL HVPRLTRVEWGVIRSSLG+PRRFSEQFLKEEKEKL  YR+SVR HY 
Sbjct: 620  QEFVEYLDHVGLGHVPRLTRVEWGVIRSSLGKPRRFSEQFLKEEKEKLYLYRDSVRKHYD 679

Query: 701  ELRSGTKEGLPTDLARPLYVGQRIIAVHPRTREICDGSVLTVEHSRYRVQFDKRELGIEF 760
            EL +G +EGLP DLARPL V QR+I +HP++REI DG+VLTV+H RYR+QFD  ELG+EF
Sbjct: 680  ELNTGMREGLPMDLARPLNVSQRVICLHPKSREIHDGNVLTVDHCRYRIQFDNPELGVEF 739

Query: 761  VQDIDCMPLNPLENMPASLTRPNVAFGKF-MDNFTELQMNGQPRERDIEGYMKFTPCENL 819
            V+D +CMPLNPLENMPASL R + AF  + + N  E +M+ + +E  +EGY K + CE  
Sbjct: 740  VKDTECMPLNPLENMPASLAR-HYAFSNYHIQNPIEEKMHERAKESMLEGYPKLS-CET- 796

Query: 820  ETAYAPSHISPSTNYPINNLLQQHK-GVSYTDSEVHVG---------------STG--QA 861
                   H+  S NY I+N L+Q K  +S ++ +   G               S G  QA
Sbjct: 797  ------GHLLSSPNYNISNSLKQEKVDISSSNPQAQDGVDEALALQLFNSQPSSIGQIQA 850

Query: 862  KEEDVLALSHLRHALDKK------------------------------------------ 879
            +E DV ALS L  ALDKK                                          
Sbjct: 851  READVQALSELTRALDKKELVLRELKCMNDEVVESQKDGHNNALKDSESFKKQYAAVLFQ 910

Query: 880  -------VASALFCLRQRNTYQGNTCLTGLKPMSGLGNLGGGLPNSFDHSAYQTPESGPH 932
                   V+ AL  LRQRNTYQ N   + ++ MS  G   G L    D++A  T  +G H
Sbjct: 911  LSEINEQVSLALLGLRQRNTYQENVPYSSIRRMSKSGEPDGQLTYE-DNNASDT--NGFH 967

Query: 933  VVEVVESSRSKAQKMVDVAVQALSSLEKEGNGIERIEEAMDYVNNKLAGNDSGMPSIRSS 992
            V E+VESSR KA+KMV  AVQAL  L K+ N    +EEA+D+VNN+L+ +          
Sbjct: 968  VSEIVESSRIKARKMVYRAVQALELLRKDENNNVNMEEAIDFVNNQLSID---------Q 1018

Query: 993  TSADLVHSSRNSQDQQLETHTTNLLANSRAPDSTLNNSSDENSAHIPLELIAHCVAALFM 1052
            T    V  ++  QDQ+L + T N  +++ A DS LN   D+N   +P +L++ C+A L M
Sbjct: 1019 TEGSSVQQTQGGQDQRLPS-TPNPPSSTPANDSHLNQ-PDQNDLQVPSDLVSRCIATLLM 1076

Query: 1053 IQRCTERDFPPADVALVLDSAVTSLQPCCSQNLPVYAEIQKCMGIIRNQILALIPT 1108
            IQ+CTER FPP++VA VLDSAV SLQPCCSQNLP+Y EIQKCMGIIRNQILAL+P+
Sbjct: 1077 IQKCTERQFPPSEVAQVLDSAVASLQPCCSQNLPIYTEIQKCMGIIRNQILALVPS 1132

Arabidopsis thaliana (taxid: 3702)
>sp|Q6A333|ALY2_ARATH Protein ALWAYS EARLY 2 OS=Arabidopsis thaliana GN=ALY2 PE=1 SV=1 Back     alignment and function description
>sp|Q6A331|ALY1_ARATH Protein ALWAYS EARLY 1 OS=Arabidopsis thaliana GN=ALY1 PE=2 SV=2 Back     alignment and function description
>sp|Q5RHQ8|LIN9_DANRE Protein lin-9 homolog OS=Danio rerio GN=lin9 PE=2 SV=1 Back     alignment and function description
>sp|Q8C735|LIN9_MOUSE Protein lin-9 homolog OS=Mus musculus GN=Lin9 PE=2 SV=2 Back     alignment and function description
>sp|Q4R8N2|LIN9_MACFA Protein lin-9 homolog OS=Macaca fascicularis GN=LIN9 PE=2 SV=1 Back     alignment and function description
>sp|Q5TKA1|LIN9_HUMAN Protein lin-9 homolog OS=Homo sapiens GN=LIN9 PE=1 SV=1 Back     alignment and function description
>sp|P30630|LIN9_CAEEL Protein lin-9 OS=Caenorhabditis elegans GN=lin-9 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1110
2555516951119 always early, putative [Ricinus communis 0.946 0.939 0.555 0.0
4494954521161 PREDICTED: protein ALWAYS EARLY 3-like [ 0.967 0.925 0.530 0.0
4494328281161 PREDICTED: LOW QUALITY PROTEIN: protein 0.967 0.925 0.530 0.0
2977368871127 unnamed protein product [Vitis vinifera] 0.934 0.920 0.522 0.0
3565639001181 PREDICTED: protein ALWAYS EARLY 3-like [ 0.980 0.921 0.489 0.0
3565199861155 PREDICTED: protein ALWAYS EARLY 3-like [ 0.954 0.916 0.478 0.0
224123182980 predicted protein [Populus trichocarpa] 0.806 0.913 0.544 0.0
2978351141131 always early protein 3 [Arabidopsis lyra 0.939 0.922 0.469 0.0
1865102861132 protein ALWAYS EARLY 3 [Arabidopsis thal 0.940 0.922 0.464 0.0
92946901128 unnamed protein product [Arabidopsis tha 0.940 0.925 0.466 0.0
>gi|255551695|ref|XP_002516893.1| always early, putative [Ricinus communis] gi|223543981|gb|EEF45507.1| always early, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1219 bits (3153), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 653/1176 (55%), Positives = 797/1176 (67%), Gaps = 125/1176 (10%)

Query: 1    MAPTRRSKSVNKRVAYTSEVASKKKAENADRSGKRKRKLSDMLGPQWSKEELERFYEAYR 60
            MAP+R+S+SVNKR +Y +E  S K  EN +R  +RKRKLSDMLGPQWSKEELERFY AYR
Sbjct: 1    MAPSRKSRSVNKRFSYINEATSNKTGENDNRRRQRKRKLSDMLGPQWSKEELERFYRAYR 60

Query: 61   KYGKDWKKIAAAVRNRTAEMVEALFTMNRAYLSLPEGTASVVGLIAMMTDHYGILAGSDG 120
            K+GKDW K+AAAVR+R+ EMVEAL+TMNRAYL+LP+G AS  GLIAMMTDHY  L  SD 
Sbjct: 61   KHGKDWGKVAAAVRDRSVEMVEALYTMNRAYLNLPKGYASAAGLIAMMTDHYTNLEESDS 120

Query: 121  EQESDEATGSSQKSQKCAGGKFQNPPPKGSDG-PSPDLLNFQSAAPNYGCLSLLKKRRSG 179
            EQE  E   + +K QK + G       K  D  P PDL+  QSAA N+GCLSLLKKRRSG
Sbjct: 121  EQEITEPVVAPRKPQKRSRGT------KELDASPVPDLMQSQSAASNFGCLSLLKKRRSG 174

Query: 180  SRPRAVAKRTPRVPVSYSYDKDNTEKYISPIKQGLKPRLGSIDDDVAHEIALALTEASQR 239
             RP AV KRTPRVPVS+SYDK + +KYISPI+  LK +  ++DDDVAHEIAL LTEASQR
Sbjct: 175  GRPWAVGKRTPRVPVSFSYDKASGQKYISPIRPDLKLKADALDDDVAHEIALVLTEASQR 234

Query: 240  GGSLLVSQTPKRKRGKPSPVQKGSRTCDVSEMNSSKPHGSEMDEDGRELSLGSTDADNGY 299
             GS   SQTP  K   PS  + G      SEM SSKP GSEMDE G ELSLGST+AD  +
Sbjct: 235  AGSPQASQTPNGKAETPSLTRNGEHMHVESEMTSSKPRGSEMDEGGCELSLGSTEADMEH 294

Query: 300  YSRDKIYLMDAETADTVEIQQKGKRYHSKKLKQEESVSNHLDDIKEACSGTEEGQDMVVM 359
            Y+RDK                KGK YH +K + E+++ N  DDIKEACSGTEEGQ +  +
Sbjct: 295  YARDKRLT-------------KGKGYHGRKPEVEDNIDNSSDDIKEACSGTEEGQKLGAI 341

Query: 360  KGKFAMEIADEKNSRSYSKGSKKRSKKVLFKRDESSEFDALQTLADLSLMMPETTADTEL 419
            +GKF +E+   K +RS +KG +KRSKKVLF   E+   DALQTLAD+SL +PE   DTE 
Sbjct: 342  RGKFEVEVVGTKFARSSNKGPRKRSKKVLFGEGEADAVDALQTLADMSLRLPEALVDTES 401

Query: 420  SLQLKEEKPEAVNESKLKGNRSSTGVKDTAIKTSKLGKDCTDDVSVIPESEEGNHLTNSG 479
            S+ + ++K + V +SKLKGN S+ GVK  + KT+K G+    DVS IP+ ++  H  ++G
Sbjct: 402  SVHVDDQKTKIVAKSKLKGNHSTAGVKVASPKTTK-GRVFLHDVSPIPKVKDAVHQISAG 460

Query: 480  NRTKRQKFLPIKLRMDATEELKKFISKGKRSLSASQSKHGKLVKPPEHTSSTDHEKEGNN 539
               +R+K  P K    AT+++   ISKGK S      K G+ VKP E  SSTDH +E N+
Sbjct: 461  IGKRRKKSQPSK----ATDDVGDLISKGKSSHDTGYQKQGRPVKPSELNSSTDHGRESND 516

Query: 540  SASSTAHVRTANQVNLPTKVRSRRKMNMQKLLIERDKMSSEDILKSSEDIFNDQNRTNSS 599
            SA S+  V ++ Q NLPTKVRSRRK+N  K L+++D  SSEDI K               
Sbjct: 517  SAPSSIPVLSSKQFNLPTKVRSRRKINTPKPLLDKDNQSSEDIKK--------------- 561

Query: 600  FFDRAIKQKEQLSNCLSWYQVRVWCVSEWFYSTIDYPWFAKREFVEYLDHVGLSHVPRLT 659
                       LSNCLS Y VR W + EWFYS IDYPWFAKREFVEYLDHVGL H+PRLT
Sbjct: 562  -----------LSNCLSSYLVRRWSIFEWFYSAIDYPWFAKREFVEYLDHVGLGHIPRLT 610

Query: 660  RVEWGVIRSSLGRPRRFSEQFLKEEKEKLNQYRESVRNHYSELRSGTKEGLPTDLARPLY 719
            RVEWGVIRSSLG+PRRFSEQFL EEKEKLNQYRESVR HY+ELR+GT++GLPTDLARPL 
Sbjct: 611  RVEWGVIRSSLGKPRRFSEQFLSEEKEKLNQYRESVRKHYTELRAGTRDGLPTDLARPLS 670

Query: 720  VGQRIIAVHPRTREICDGSVLTVEHSRYRVQFDKRELGIEFVQDIDCMPLNPLENMPASL 779
            VGQRIIA+HP+TREI DGSVLTV+H+R R+QFD+ ELG+E V D+DCMPLNPLENMPASL
Sbjct: 671  VGQRIIALHPKTREIHDGSVLTVDHNRCRIQFDQPELGVELVMDVDCMPLNPLENMPASL 730

Query: 780  TRPNVAFGKFMDNFTELQMNGQPRERDIEGYMKFTPCENLETAYAPSHISPSTNYPINNL 839
            TR  V F +F++N  EL+MNGQP ER++EGY+KF  CEN+E      H SPST++ I+NL
Sbjct: 731  TRQTVVFNRFIENLNELKMNGQPVERNMEGYIKFASCENMENTDGLLHSSPSTHH-ISNL 789

Query: 840  LQQHKGVSYTDSEVHVGSTG--------------------QAKEEDVLALSHLRHALDKK 879
            +Q  KG    +   HV +                      QAK+ D+ ALS L  ALDKK
Sbjct: 790  MQHGKGY-LANYSTHVATESGESVINQQAVNTQPFILAHIQAKDADIQALSDLTRALDKK 848

Query: 880  -----------------------------------------------VASALFCLRQRNT 892
                                                           V+SAL CLRQRNT
Sbjct: 849  EAVVSELKRMNDEVENEKDGENSLKDSELFKKHYAAVLFQLNEVNEQVSSALLCLRQRNT 908

Query: 893  YQGNTCLTGLKPMSGLGNLGGGLPNSFDHSAYQTPESGPHVVEVVESSRSKAQKMVDVAV 952
            YQGN     +KPM+ +G   G   + FD SA +T ESG HV E+VE+SR+KAQ MVD A+
Sbjct: 909  YQGNNPQMWMKPMTYIGEPVGHC-SLFDRSADETQESGSHVAEIVETSRAKAQTMVDAAM 967

Query: 953  QALSSLEKEGNGIERIEEAMDYVNNKLAGNDSGMPSIRSSTSADLVHSSRNSQDQQLETH 1012
            QA+SSL+KEG+    IEEA+D+VNN+L+ +D    ++RSS  A+ VHS+  SQDQ   + 
Sbjct: 968  QAMSSLKKEGSN---IEEAIDFVNNQLSADDLSTSAVRSSIPANSVHSTVASQDQS-SSC 1023

Query: 1013 TTNLLANSRAPDSTLNNSSDENSAHIPLELIAHCVAALFMIQRCTERDFPPADVALVLDS 1072
            TTNL  NS AP++ +++S +++ A IP E+I  CVA L MIQ+CTER FPP+DVA VLDS
Sbjct: 1024 TTNLGPNSHAPETDMDHSPEQSEAQIPSEIITQCVATLLMIQKCTERQFPPSDVAQVLDS 1083

Query: 1073 AVTSLQPCCSQNLPVYAEIQKCMGIIRNQILALIPT 1108
            AVTSL+PCCSQNLP+YA+IQKCMGIIRNQILALIPT
Sbjct: 1084 AVTSLKPCCSQNLPIYADIQKCMGIIRNQILALIPT 1119

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449495452|ref|XP_004159845.1| PREDICTED: protein ALWAYS EARLY 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449432828|ref|XP_004134200.1| PREDICTED: LOW QUALITY PROTEIN: protein ALWAYS EARLY 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297736887|emb|CBI26088.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356563900|ref|XP_003550195.1| PREDICTED: protein ALWAYS EARLY 3-like [Glycine max] Back     alignment and taxonomy information
>gi|356519986|ref|XP_003528649.1| PREDICTED: protein ALWAYS EARLY 3-like [Glycine max] Back     alignment and taxonomy information
>gi|224123182|ref|XP_002330359.1| predicted protein [Populus trichocarpa] gi|222871563|gb|EEF08694.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297835114|ref|XP_002885439.1| always early protein 3 [Arabidopsis lyrata subsp. lyrata] gi|297331279|gb|EFH61698.1| always early protein 3 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|186510286|ref|NP_001078197.2| protein ALWAYS EARLY 3 [Arabidopsis thaliana] gi|75323048|sp|Q6A332.1|ALY3_ARATH RecName: Full=Protein ALWAYS EARLY 3; Short=AtALY3 gi|50539422|emb|CAE47462.1| always early protein 3 [Arabidopsis thaliana] gi|332642987|gb|AEE76508.1| protein ALWAYS EARLY 3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|9294690|dbj|BAB03056.1| unnamed protein product [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1110
TAIR|locus:20894381132 ALY3 "ALWAYS EARLY 3" [Arabido 0.516 0.506 0.432 3.7e-159
TAIR|locus:2143666971 ALY1 "ALWAYS EARLY 1" [Arabido 0.386 0.441 0.383 7.5e-143
ZFIN|ZDB-GENE-030131-1747543 lin9 "lin-9 homolog (C. elegan 0.219 0.449 0.324 3.1e-19
UNIPROTKB|Q5TKA1542 LIN9 "Protein lin-9 homolog" [ 0.154 0.317 0.336 2.8e-17
MGI|MGI:1919818542 Lin9 "lin-9 homolog (C. elegan 0.156 0.321 0.343 8.1e-17
UNIPROTKB|C9J5J4489 LIN9 "Protein lin-9 homolog" [ 0.154 0.351 0.336 8.9e-17
DICTYBASE|DDB_G0286665999 lin9 "RmlC-like cupin family p 0.171 0.190 0.264 1.6e-16
UNIPROTKB|Q5ZMF8450 LIN9 "Uncharacterized protein" 0.154 0.382 0.336 1.6e-16
UNIPROTKB|F1MIQ3541 LOC534587 "Uncharacterized pro 0.154 0.317 0.336 1.9e-16
UNIPROTKB|H0Y322613 LIN9 "Protein lin-9 homolog" [ 0.154 0.280 0.336 2e-16
TAIR|locus:2089438 ALY3 "ALWAYS EARLY 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1066 (380.3 bits), Expect = 3.7e-159, Sum P(2) = 3.7e-159
 Identities = 264/610 (43%), Positives = 357/610 (58%)

Query:     1 MAPTRRSKSVNKRVAYTSEVASKKKAENADRSGKRKRKLSDMLGPQWSKEELERFYEAYR 60
             MAP+R  KS  K+      V+  K  E+  ++ +RKRKLSDMLGPQWSKEELERFYE YR
Sbjct:     1 MAPSRSKKSKYKKKPRAKAVSPHKDEESMSKTKQRKRKLSDMLGPQWSKEELERFYEGYR 60

Query:    61 KYGKDWKKIAAAVRNRTAEMVEALFTMNRAYLSLPEGTASVVGLIAMMTDHYGIL-AGSD 119
             K+GK+WKK+A  V +R+AEMVEAL+TMN+AYLSLPEGTASVVGL AMMTDHY +L  GSD
Sbjct:    61 KFGKEWKKVAGFVHSRSAEMVEALYTMNKAYLSLPEGTASVVGLTAMMTDHYSVLHGGSD 120

Query:   120 GEQESDEATGSSQKSQKCAGGKFQNXXXXXXXXXXXXLLNFQSAAPNYGCLSLLKKRRSG 179
              EQE++E   + + + K +  K  +            L  F+S++   G +  LKKRR+ 
Sbjct:   121 SEQENNEGIETPRSAPKRSRVKSSDHPSIGLEGLSDRL-QFRSSS---GFMPSLKKRRTE 176

Query:   180 SRPRAVAKRTPRVPVSYSYDKDNTEKYISPIKQGLKPRLGSIDDDVAHEIALALTEASQR 239
             + PRAV KRTPR+P+SY+ +KD  E+Y+SP+K+GL  +    DDD+ HEIALAL EASQR
Sbjct:   177 TMPRAVGKRTPRIPISYTLEKDTRERYLSPVKRGLNQKGDDTDDDMEHEIALALAEASQR 236

Query:   240 GGSLLVSQTPKRKRGKPSPVQKGSRT-CDVSEMNSSKPHGSEMDEDGRELSLGSTDADNG 298
             GGS   S TP RK     P +KG R   D+ ++  +K H ++M++   E SLGST+ADN 
Sbjct:   237 GGSTKNSHTPNRKAKMYPPDKKGERMRADI-DLAIAKLHATDMEDVRCEPSLGSTEADNA 295

Query:   299 YYSRDKIYLMDAETADTVEIQQKGKRYHSKKLKQEESVSNHLDDIKEACSGTEEGQDMVV 358
              YS  +  L   E +  VE QQKG+ Y+ +++  +E      +D KEACSGT+E   +  
Sbjct:   296 DYSGGRNDLTHGEGSSAVEKQQKGRTYYRRRVGIKE------EDAKEACSGTDEAPSLGA 349

Query:   359 MKGKFAMEIADEXXXXXXXXXXXXXXXXXXXXXDESSEFDALQTLADLSLMMPETTADTE 418
                KF  E  +                      DE +  DAL TLADLSLMMPET  DTE
Sbjct:   350 PDEKFEQE-REGKALKFTYKVSRRKSKKSLFTADEDTACDALHTLADLSLMMPETATDTE 408

Query:   419 LSLQLKEEKPEAVNESKLKGNRSSTGVKDTAIKTSKLGKDCTDDVSVIPESEEGNHLTNS 478
              S+Q +E+K      S  KG   ++  K ++++ SK  +  ++D+   PE E  +  ++S
Sbjct:   409 SSVQAEEKKAGEAYVSDFKGTDPASMSKSSSLRNSKQRRYGSNDLCN-PELERKSP-SSS 466

Query:   479 GNRTKRQKFLPIKLRMDAT-EELK------------------KFISKGKRSLSASQSKHG 519
               + +RQK LP K+R +   +EL                   K + +GKRS S   S   
Sbjct:   467 LIQKRRQKALPAKVRENVLKDELAASSQVIEPCNSKGIGEEYKPVGRGKRSASIRNSHEK 526

Query:   520 KLVKPPEHTSSTDHEKEGNNSASSTAHVRTANQVNLPTKVRSRRKMNMQKLLIERDKMSS 579
             K  K  +HTSS+++  E + SA S A ++   QVNLPTKVRSRRK+  +K L   D   S
Sbjct:   527 KSAKSHDHTSSSNNIVEEDESAPSNAVIK--KQVNLPTKVRSRRKIVTEKPLTIDDGKIS 584

Query:   580 EDILKSSEDI 589
             E I K S  I
Sbjct:   585 ETIEKFSHCI 594
GO:0003677 "DNA binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005515 "protein binding" evidence=IPI
GO:0009630 "gravitropism" evidence=RCA
GO:0010413 "glucuronoxylan metabolic process" evidence=RCA
GO:0045492 "xylan biosynthetic process" evidence=RCA
TAIR|locus:2143666 ALY1 "ALWAYS EARLY 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-1747 lin9 "lin-9 homolog (C. elegans)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q5TKA1 LIN9 "Protein lin-9 homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1919818 Lin9 "lin-9 homolog (C. elegans)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|C9J5J4 LIN9 "Protein lin-9 homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0286665 lin9 "RmlC-like cupin family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZMF8 LIN9 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1MIQ3 LOC534587 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|H0Y322 LIN9 "Protein lin-9 homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6A332ALY3_ARATHNo assigned EC number0.46480.94050.9222yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1110
pfam06584109 pfam06584, DIRP, DIRP 2e-44
cd0016745 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA- 2e-07
smart0071749 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII 3e-07
pfam0024947 pfam00249, Myb_DNA-binding, Myb-like DNA-binding d 4e-07
pfam1392159 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do 0.002
cd1166146 cd11661, SANT_MTA3_like, Myb-Like Dna-Binding Doma 0.004
>gnl|CDD|148285 pfam06584, DIRP, DIRP Back     alignment and domain information 
 Score =  155 bits (394), Expect = 2e-44
 Identities = 59/109 (54%), Positives = 70/109 (64%), Gaps = 7/109 (6%)

Query: 629 FYSTIDYPWFAKREFVEYL-DHVGLSHVPRLTRVEWGVIRSSLGRPRRFSEQFLKEEKEK 687
           FYS ID PWF   +FV YL +H  L H  RLTR EW +IR S+G+PRRFS  FLKEE+EK
Sbjct: 1   FYSAIDKPWFEDNDFVRYLREHFPLLHTRRLTRAEWRLIRRSMGKPRRFSAAFLKEEREK 60

Query: 688 LNQYRESVRN------HYSELRSGTKEGLPTDLARPLYVGQRIIAVHPR 730
           L + RE +R       HY EL  G  E LP D+  PL VGQ++ A HPR
Sbjct: 61  LERKREKIRQLQQLKLHYKELNVGLLEDLPKDVPLPLAVGQKVTARHPR 109

DIRP (Domain in Rb-related Pathway) is postulated to be involved in the Rb-related pathway, which is encoded by multiple eukaryotic genomes and is present in proteins including lin-9 of Caenorhabditis elegans, aly of fruit fly and mustard weed. Studies of lin-9 and aly of fruit fly proteins containing DIRP suggest that this domain might be involved in development. Aly, lin-9, act in parallel to, or downstream of, activation of MAPK by the RTK-Ras signalling pathway. Length = 109
>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|212559 cd11661, SANT_MTA3_like, Myb-Like Dna-Binding Domain of MTA3 and related proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1110
KOG1019837 consensus Retinoblastoma pathway protein LIN-9/chr 100.0
PF06584109 DIRP: DIRP; InterPro: IPR010561 DIRP (Domain in Rb 100.0
KOG1019837 consensus Retinoblastoma pathway protein LIN-9/chr 99.96
TIGR0155757 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c 99.02
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 98.85
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 98.33
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 98.29
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 97.93
COG5259531 RSC8 RSC chromatin remodeling complex subunit RSC8 97.5
KOG1279506 consensus Chromatin remodeling factor subunit and 96.95
PLN03212249 Transcription repressor MYB5; Provisional 96.72
KOG0457438 consensus Histone acetyltransferase complex SAGA/A 96.13
PLN03091459 hypothetical protein; Provisional 95.76
PLN03212249 Transcription repressor MYB5; Provisional 95.17
PLN03091459 hypothetical protein; Provisional 94.68
KOG0724335 consensus Zuotin and related molecular chaperones 93.13
KOG4468782 consensus Polycomb-group transcriptional regulator 92.77
KOG4329445 consensus DNA-binding protein [General function pr 92.63
COG5118507 BDP1 Transcription initiation factor TFIIIB, Bdp1 92.4
smart0033357 TUDOR Tudor domain. Domain of unknown function pre 91.76
COG5114432 Histone acetyltransferase complex SAGA/ADA, subuni 91.67
PF07039130 DUF1325: SGF29 tudor-like domain; InterPro: IPR010 88.54
KOG0048238 consensus Transcription factor, Myb superfamily [T 87.86
PF15057124 DUF4537: Domain of unknown function (DUF4537) 84.68
KOG1194534 consensus Predicted DNA-binding protein, contains 82.63
smart0074361 Agenet Tudor-like domain present in plant sequence 82.4
PF15057124 DUF4537: Domain of unknown function (DUF4537) 82.23
PF0946555 LBR_tudor: Lamin-B receptor of TUDOR domain; Inter 81.46
>KOG1019 consensus Retinoblastoma pathway protein LIN-9/chromatin-associated protein Aly [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=1e-84  Score=753.57  Aligned_cols=787  Identities=35%  Similarity=0.437  Sum_probs=646.6

Q ss_pred             CCCCc--CccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHHHHHHHcCCChHHHHHHHh-cch
Q 001272            1 MAPTR--RSKSVNKRVAYTSEVASKKKAENADRSGKRKRKLSDMLGPQWSKEELERFYEAYRKYGKDWKKIAAAVR-NRT   77 (1110)
Q Consensus         1 Map~R--ksrsvnK~~~~~~e~~~~~~~~~~~k~k~rk~klsd~lg~rWs~eEh~rFlea~r~yGk~WkkVa~~V~-tRT   77 (1110)
                      |||.|  |++.++|+++  |+++|+.+....+|.++||++++|+|+++|+..|+++||++|++||+.|+++++.++ +|+
T Consensus         1 ~a~vRkrk~~~~~~~~~--ndtsp~~~~~~~sKt~qR~~~~~d~l~pq~s~~~~e~~~k~~~k~~~~~r~~~~~~~~~R~   78 (837)
T KOG1019|consen    1 MAAVRKRKSKSVDKRFT--NDTSPRYDSGSTSKTPQRKRKLADKLSPQWSKLELERFYKAYRKRGREWRKSPAAVRSTRS   78 (837)
T ss_pred             CCccccccccccccccc--ccccccccccccccCCCCCcccccccCcchhHhhhhhhhhcccccccccccccccccchhh
Confidence            89999  8889999999  999999999999999999999999999999999999999999999999999999999 599


Q ss_pred             HHHHHHHHhhhhhhcccCcccccccceeeeeeccccccCCCCCCccccccccCccccccccCCcc-CCCCCCCCCCCCCc
Q 001272           78 AEMVEALFTMNRAYLSLPEGTASVVGLIAMMTDHYGILAGSDGEQESDEATGSSQKSQKCAGGKF-QNPPPKGSDGPSPD  156 (1110)
Q Consensus        78 ~~qVrsly~~~k~~l~lpeg~as~~gliAmmtdhy~~l~~s~Se~es~~~~~~~~k~~kr~r~~~-~~~~~~~~~~~~~~  156 (1110)
                      +.||+.||.||+||+++|+|+++++|+|+||||||+++.||.++.|++++++..++.+|++|+++ +.+.      ....
T Consensus        79 s~~vell~~~n~Ay~S~~~~~~si~G~~~~~t~~ys~~~gs~~~~e~~d~sE~e~k~~k~kr~~va~~~D------~~eg  152 (837)
T KOG1019|consen   79 SNMVELLKAMNKAYLSLSEGTESILGLIEPMTDHYSVLEGSGPEGESNDASEKERKAIKRKRAKVAKRSD------FDEG  152 (837)
T ss_pred             hhHHHHHHhhhcccccccccccccccccccCCCccchhcCCCCCCccchhhhhhHHHHHHHhhccccccc------cccc
Confidence            99999999999999999999999999999999999999999999999999999999999999988 4443      2222


Q ss_pred             ccccccCCCCCCccccccccccCCCCcccccCCCccccccccccCCcccccCccccCCCCCCCCCChhhHHHHHHHHHHH
Q 001272          157 LLNFQSAAPNYGCLSLLKKRRSGSRPRAVAKRTPRVPVSYSYDKDNTEKYISPIKQGLKPRLGSIDDDVAHEIALALTEA  236 (1110)
Q Consensus       157 ~~~~~~~~S~~G~ls~lKkrr~g~~~~avgKRTPRvpvs~~~~kd~~e~~i~p~~r~~K~~~da~ddd~~h~iAlAltEa  236 (1110)
                      +---..+.|..||+++||+.++   -++.++++|++++-..+..+|.+.+..|+.|..++. +..|            ++
T Consensus       153 ~~l~n~~~s~~~~~~~~~q~~~---~~~~k~~~~~~~~~~~~~aed~~~~s~~n~r~~~ql-~r~~------------~k  216 (837)
T KOG1019|consen  153 LRLTNEAKSLSGHLWFFKQFRT---SQADKPTLKQFLVYKNQTAEDAPTLSRPNIRALWQL-DRRD------------GK  216 (837)
T ss_pred             ccchhhhccccchHHHHHHHHh---hhhccccchhhhHHHhhhhhhhhhccchhhhhhhhh-hccc------------cc
Confidence            2334456788999999999997   569999999999999999999999988888887763 3333            67


Q ss_pred             hhcCCCCCccCCccCcCCC-C-CCCCCCCcccccccccCCCCCCCCccccccccCCCCCCCCCCcccccchhhhccccch
Q 001272          237 SQRGGSLLVSQTPKRKRGK-P-SPVQKGSRTCDVSEMNSSKPHGSEMDEDGRELSLGSTDADNGYYSRDKIYLMDAETAD  314 (1110)
Q Consensus       237 sqRGgSp~vS~tP~Rr~~~-~-Sp~~~~~k~~~~Se~~ssK~hgs~~de~~~E~SlgS~~a~~g~y~rd~s~lm~~eg~~  314 (1110)
                      +.||+.      |.++.+. . +|.+.+.++-+ +.--.+|+.+++|.++|++    +....-|.-.++++.||+|++..
T Consensus       217 sRr~~~------~~f~~e~~E~~~~~~~~~~~~-sr~~~~~~~nss~~~~~~~----~i~~~l~~~~~~Ss~L~~~er~~  285 (837)
T KOG1019|consen  217 SRRGSA------PFFREELSEQIPKRERIKTSQ-SREKFSKLKNSSMLRIGPR----SIPKPLGKPDRVSSLLMDMERMG  285 (837)
T ss_pred             chhccc------hhhHhHHhhhhHHHHhhhhhh-hhcccCCCCchHHhhhhhh----hcccccccCccchhhhhchhhcc
Confidence            888887      7777765 2 46666666633 3334567789999999999    67778889999999999999985


Q ss_pred             hHHHHhhccccccccchhhhcccCCcchhhhhccCccccchhhhhcccchhhhcccccccCCcccccccccccccCCCcc
Q 001272          315 TVEIQQKGKRYHSKKLKQEESVSNHLDDIKEACSGTEEGQDMVVMKGKFAMEIADEKNSRSYSKGSKKRSKKVLFKRDES  394 (1110)
Q Consensus       315 ~v~~~~K~k~~~~kk~kve~~~~~~~dD~~EAcSgteeg~~~~~~k~~~e~ev~~~k~~~~s~~~~~kRskklf~~d~e~  394 (1110)
                      .++.         +-+++|.+.+++++|                                                    
T Consensus       286 ~~~~---------kv~~~e~ae~sy~~d----------------------------------------------------  304 (837)
T KOG1019|consen  286 LEEA---------KVVKDELAEGSYLDD----------------------------------------------------  304 (837)
T ss_pred             cccc---------eeEeechhhhhhhhh----------------------------------------------------
Confidence            5543         224566666666654                                                    


Q ss_pred             hhhhHHHHHHHhh-ccCCCccccccccccccccCc------cccccccccCCCCCCCCccc-------------hhhccc
Q 001272          395 SEFDALQTLADLS-LMMPETTADTELSLQLKEEKP------EAVNESKLKGNRSSTGVKDT-------------AIKTSK  454 (1110)
Q Consensus       395 salDAL~TLAdlS-l~~P~~~~esess~q~~~e~~------k~~~ps~~s~~~~~~~~~~~-------------~~k~sk  454 (1110)
                       +|||++++|.++ .|+|...++++++.+.++++.      +++.+..+++.++.+...+.             .+.+.|
T Consensus       305 -~~~~~~~~ae~~~s~~p~~~l~S~~~t~~~~~~s~~i~d~~ss~~~iv~~~~~~~~~nv~~~ke~L~~~l~a~~~~k~k  383 (837)
T KOG1019|consen  305 -GLDALKLPAEESVSMLPGNRLESESSTHYKEERSGIIMDVNSSGFEIVETSPHIPKNNVSDTKELLDGKLRALSKRKIK  383 (837)
T ss_pred             -hhhhhccchhhcccccccccchhhcccccccccccceeccCcCCceeeccCcCCccccchhhhhhhhhhhhhhhhhccc
Confidence             499999999999 999999999999999999882      33334445555544444333             233677


Q ss_pred             cCCCCCCCCCccCccccCcccCCCcccccccccchhhh------------hhhhHHHhhhhhccccccccccccccCccc
Q 001272          455 LGKDCTDDVSVIPESEEGNHLTNSGNRTKRQKFLPIKL------------RMDATEELKKFISKGKRSLSASQSKHGKLV  522 (1110)
Q Consensus       455 ~~k~~~~d~~~~~e~~~~~~~~~~~~~krk~K~~~~k~------------k~~~~~e~~~~~~kgk~~~~~~~~~q~~~v  522 (1110)
                      +.|..+.|+..+++....+.+     ++++++.+.++.            +......+.++.+++++..+.+..+|...+
T Consensus       384 ~~k~~s~d~~~v~~~il~~ls-----~~~~~~v~D~et~~ei~q~~S~~~~~~~~~~e~~s~v~~~r~~~~~a~~q~~t~  458 (837)
T KOG1019|consen  384 PSKPLSTDGVRVSVAILMDLS-----RKRKLLVLDVETPKEISQSKSRNRGESTERLEKKSLVKGRRYSAVPANLQRLTK  458 (837)
T ss_pred             ccccccCCCccchhHHhhhhc-----ccCccccccccchhhhhcccccccccchhhhhhhhhhhhhhhhhhhHHHHHhhh
Confidence            788889999999998775444     566667666653            111222236788889999888777999999


Q ss_pred             CCCC-CCCCCcccccCCCCCCCcccccccCCcCCCccccchhhhhhcchhhhhhccchhhhhcccccccccCCCCCcccc
Q 001272          523 KPPE-HTSSTDHEKEGNNSASSTAHVRTANQVNLPTKVRSRRKMNMQKLLIERDKMSSEDILKSSEDIFNDQNRTNSSFF  601 (1110)
Q Consensus       523 ~~~e-~~~ssd~~~~~~~~~~st~~v~~~~qv~l~tK~rSRRK~~~~k~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  601 (1110)
                      +..+ ..+-+|......|....+.++..-+..-++.|.+.+|++.+++.+.++.++..-+-+.+...  |+    ++.  
T Consensus       459 ~i~~~~~l~~d~~~~~~d~~~~~~q~s~~~~~~~~Qk~~n~rd~elk~a~~e~~~~~e~~h~~~~s~--n~----~Sq--  530 (837)
T KOG1019|consen  459 KIGEESRLTRDKKELGADADIQPRQVSKSGPAFQEQKAPNIRDIELKNALQEKALSGEQDHHMYFSR--ND----LSQ--  530 (837)
T ss_pred             hccchhhhhhhhhhcccccccccchhcccchhhhhhhcchhHHHHHHhHHHHHHhhcccchhhhccc--cc----hhH--
Confidence            9984 47888988888888999999999888999999999999999999999987644343333321  10    000  


Q ss_pred             ccHHHHHHHHHhhhccccccCeeeeeccccCCChhhhccchHHHHHhhcCCCCCCCcchhhHHHHHhhcCCCCCCcHHHH
Q 001272          602 DRAIKQKEQLSNCLSWYQVRVWCVSEWFYSTIDYPWFAKREFVEYLDHVGLSHVPRLTRVEWGVIRSSLGRPRRFSEQFL  681 (1110)
Q Consensus       602 ~~~~~l~~rL~n~L~~pkarRW~~yEwFYS~IDkp~F~~NEF~e~L~e~gl~~~~rLTR~EW~~IRrsmGKPRRFS~aFL  681 (1110)
                       ....++.++.+|+..+...+||++||||+++|.+||..-+|..||.+++|++++++++++|.+|-..+|.||  |..|+
T Consensus       531 -~~l~~~~kre~c~~~~~~~vd~i~~~~~~~~~~l~~~k~~~Td~L~~v~lg~~p~~s~V~~~vl~~~lqepr--s~~~~  607 (837)
T KOG1019|consen  531 -SELLPKAKREECSSQAGRTVDHINEGFYSANPHLGFLKMEFTDYLNHVRLGGTPRLSAVEWSVLKSSLQEPR--STRIL  607 (837)
T ss_pred             -HHhcchhHHHhhhccCchhHHHHHhHHhhcCcchhHHHhhhhhhhhccccccccchhhhhHHHHHHHhhcch--hhhhh
Confidence             112236799999999999999999999999999999999999999999999999999999999999999999  99999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhccccCCCCcccCCCccCCCEEEEEcCCCCCcccceEEEEecCeeEEEecCCCCceeEe
Q 001272          682 KEEKEKLNQYRESVRNHYSELRSGTKEGLPTDLARPLYVGQRIIAVHPRTREICDGSVLTVEHSRYRVQFDKRELGIEFV  761 (1110)
Q Consensus       682 ~EER~kLE~~R~~IRqlq~e~~~~~~e~LP~dIP~PL~VGqkV~A~hP~trgL~dGtVlaVd~~~YRV~FDRpeLGv~~V  761 (1110)
                      .+||+.|+.|++.+|.+|.++...-.+.+++++.+||.||    |.||.|+++|||.|++++++.|-|-|+  +||++.|
T Consensus       608 ~~er~~lq~yvE~~~k~~~~l~s~~~~~~~t~~~r~~d~~----~s~p~t~e~~d~~~~~~~~n~~~~~~~--~~~a~~~  681 (837)
T KOG1019|consen  608 QEEREKLQDYVESVRKTYHELRSEAGELLGTDLARKLDVG----ASHPKTREIHDGKILTVDHNKCNVLFD--KLGAELV  681 (837)
T ss_pred             hhHHHHHHHHHHhhhcchhhhhccccccccchhccccccc----cCCcchhhhhhhhhhhcccccCccchh--hhccccc
Confidence            9999999999999999999999988999999999999999    999999999999999999999999999  7899999


Q ss_pred             cccccccCCCCCCCCcccccccccccccchhhhhhhhcCCCCcccccCccc-cCccccccccCCCCCCCCCCCCcchhhh
Q 001272          762 QDIDCMPLNPLENMPASLTRPNVAFGKFMDNFTELQMNGQPRERDIEGYMK-FTPCENLETAYAPSHISPSTNYPINNLL  840 (1110)
Q Consensus       762 pD~dVmpl~p~e~mP~sl~~~~~~~n~~~~~~~e~~~~~~~~e~~~~g~~~-f~~~e~~~~~~~~~h~~p~~~~~~~~l~  840 (1110)
                      +|++|||++|.+.+|+-++++.   .++.+...|++.+|+.    ..|++. |.+|+ ++|                   
T Consensus       682 ~~q~~~~ln~~~dk~e~~~r~~---d~~~~~~~e~q~~g~~----na~~~s~~~~~~-~~~-------------------  734 (837)
T KOG1019|consen  682 MDQDCMPLNPLEDKPEGLRRQI---DKCLEKEKEAQLGGHE----NAGYSSLFRPDE-LEN-------------------  734 (837)
T ss_pred             chhhccccChhhhhhhhhhhhh---hHHHHHHHHHHhCCCC----CcCchhhcCchh-HHH-------------------
Confidence            9999999999999999998876   6788888999999886    555554 44443 211                   


Q ss_pred             hccccccccCcccccccccchhhHhHHHhhHhHHHHHHHHHHHHHhhhhcccccCCCccCCCCcCCCCCCCCCCCCCCCC
Q 001272          841 QQHKGVSYTDSEVHVGSTGQAKEEDVLALSHLRHALDKKVASALFCLRQRNTYQGNTCLTGLKPMSGLGNLGGGLPNSFD  920 (1110)
Q Consensus       841 ~~~k~~~~~~~~~q~~~~~Q~~Eadi~al~els~aLdkkvs~aL~~LRqrnty~~n~~~~~~k~~~~~~~~~~g~~~~~~  920 (1110)
                                ++             .+.+    ..|| -++-+|..++|+||-..+        +....+ +.+.+..  
T Consensus       735 ----------v~-------------fq~~----~~~d-~~~~~L~g~~q~~~~~~~--------~~~~~E-~~~~l~~--  775 (837)
T KOG1019|consen  735 ----------VE-------------FQMN----QQLD-PEEPHLDGKVQHNTIEIQ--------KLKLEE-IQRELAL--  775 (837)
T ss_pred             ----------HH-------------HHHH----hccC-chhhhhhhhhhccchHhh--------hccccc-hhhHHHh--
Confidence                      00             0000    1111 156689999999992111        222333 4444333  


Q ss_pred             CCCCCCCCCCCchhhhhhhcHHHHHHHHHHHHHHHhhhhhcCC-hhhHHHHHHH
Q 001272          921 HSAYQTPESGPHVVEVVESSRSKAQKMVDVAVQALSSLEKEGN-GIERIEEAMD  973 (1110)
Q Consensus       921 ~~~~~~~e~gs~v~eiv~~Sr~~A~~MVd~A~qA~~~~~kege-~~~~i~~ald  973 (1110)
                      .++...+|++++|+|||..|+.+|++|||+||||.+ ++||+| ....|+|||+
T Consensus       776 qh~~~~~~~~~~~~eiv~~s~i~a~kmvd~a~qaa~-~~~~de~~~~~meea~~  828 (837)
T KOG1019|consen  776 QHLDDEEEMEPEMVEIVTQSKIEAQKMVDAAIQAAS-STKEDEDVNLMMEEALE  828 (837)
T ss_pred             hcCChhhhcCcchhhhhhhhHHHHHHHHHHHHHHHH-hhcccchhhHHHHHHHh
Confidence            345779999999999999999999999999999999 999999 8899999998

>PF06584 DIRP: DIRP; InterPro: IPR010561 DIRP (Domain in Rb-related Pathway) is postulated to be involved in the Rb-related pathway, which is encoded by multiple eukaryotic genomes and is present in proteins including lin-9 of Caenorhabditis elegans, aly of Drosophila melanogaster and mustard weed Back     alignment and domain information
>KOG1019 consensus Retinoblastoma pathway protein LIN-9/chromatin-associated protein Aly [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] Back     alignment and domain information
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class Back     alignment and domain information
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics] Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription] Back     alignment and domain information
>KOG4329 consensus DNA-binding protein [General function prediction only] Back     alignment and domain information
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription] Back     alignment and domain information
>smart00333 TUDOR Tudor domain Back     alignment and domain information
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>PF07039 DUF1325: SGF29 tudor-like domain; InterPro: IPR010750 SAGA-associated factor 29 is involved in transcriptional regulation, probably through association with histone acetyltransferase (HAT) complexes like the TFTC-HAT or STAGA complexes Back     alignment and domain information
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>PF15057 DUF4537: Domain of unknown function (DUF4537) Back     alignment and domain information
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription] Back     alignment and domain information
>smart00743 Agenet Tudor-like domain present in plant sequences Back     alignment and domain information
>PF15057 DUF4537: Domain of unknown function (DUF4537) Back     alignment and domain information
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1110
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 3e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-12
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 1e-10
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 4e-10
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 4e-08
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 1e-07
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 2e-07
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 3e-06
2yqk_A63 Arginine-glutamic acid dipeptide repeats protein; 9e-06
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 4e-05
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 4e-05
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 6e-05
2crg_A70 Metastasis associated protein MTA3; transcription 6e-04
1vf9_A64 Telomeric repeat binding factor 2; MYB, helix-turn 7e-04
2cjj_A93 Radialis; plant development, DNA-binding protein, 8e-04
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89 Back     alignment and structure
 Score = 62.7 bits (152), Expect = 3e-12
 Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 4/66 (6%)

Query: 31 RSGKRKRKLSDMLGPQWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTMNRA 90
           S  R+          W++EE+    +   ++G++W  IA  V ++T    +  +   + 
Sbjct: 7  HSSGRENLYFQ----GWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKK 62

Query: 91 YLSLPE 96
            +L E
Sbjct: 63 RQNLDE 68
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79 Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72 Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 61 Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Length = 235 Back     alignment and structure
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Length = 94 Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60 Back     alignment and structure
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63 Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Length = 482 Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73 Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75 Back     alignment and structure
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 Length = 70 Back     alignment and structure
>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64 Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Length = 93 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1110
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 99.17
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 98.98
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 98.98
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 98.96
2yqk_A63 Arginine-glutamic acid dipeptide repeats protein; 98.84
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 98.65
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 98.56
2crg_A70 Metastasis associated protein MTA3; transcription 98.56
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 98.56
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 98.52
1wgx_A73 KIAA1903 protein; MYB DNA-binding domain, human cD 98.48
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 98.37
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 98.35
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 97.6
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 98.2
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 98.13
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 98.11
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 98.09
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 98.02
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 97.97
1irz_A64 ARR10-B; helix-turn-helix, DNA binding protein; NM 97.94
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 97.94
2cjj_A93 Radialis; plant development, DNA-binding protein, 97.93
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 97.92
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 97.78
4eef_G74 F-HB80.4, designed hemagglutinin binding protein; 97.76
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 97.75
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 97.74
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 97.74
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 97.64
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 97.63
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 97.59
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 97.58
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 97.56
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 97.46
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 97.44
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 97.29
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 97.23
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 97.12
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 96.89
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 96.87
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 96.44
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 96.25
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 96.18
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 96.1
1ofc_X304 ISWI protein; nuclear protein, chromatin remodelin 94.66
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 94.41
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 93.61
2equ_A74 PHD finger protein 20-like 1; tudor domain, struct 93.52
3qii_A85 PHD finger protein 20; tudor domain, structural ge 93.37
3p8d_A67 Medulloblastoma antigen MU-MB-50.72; tudor domain, 93.22
4b4c_A211 Chromodomain-helicase-DNA-binding protein 1; chrom 92.29
2xdp_A123 Lysine-specific demethylase 4C; oxidoreductase, hi 91.49
2qqr_A118 JMJC domain-containing histone demethylation prote 91.21
1mhn_A59 SurviVal motor neuron protein; SMN, SMA, spinal mu 90.8
4a4f_A64 SurviVal of motor neuron-related-splicing factor; 90.79
1g5v_A88 SurviVal motor neuron protein 1; mRNA processing, 90.7
4hcz_A58 PHD finger protein 1; protein-peptide complex, tud 90.1
3mea_A180 SAGA-associated factor 29 homolog; structural geno 88.64
2l8d_A66 Lamin-B receptor; DNA binding protein; NMR {Gallus 88.36
2ldm_A81 Uncharacterized protein; PHF20, tudor domain, epig 87.96
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 85.32
2dig_A68 Lamin-B receptor; tudor domain, integral nuclear e 84.88
2g3r_A123 Tumor suppressor P53-binding protein 1; tandem tud 84.19
2y9y_A374 Imitation switch protein 1 (DEL_ATPase); transcrip 83.94
2eqj_A66 Metal-response element-binding transcription facto 83.89
2xk0_A69 Polycomb protein PCL; transcription, aromatic CAGE 83.67
2d9t_A78 Tudor domain-containing protein 3; structural geno 83.1
2m0o_A79 PHD finger protein 1; tudor domain, H3K36ME3 bindi 82.85
2e5p_A68 Protein PHF1, PHD finger protein 1; tudor domain, 82.37
4iej_A93 DNA methyltransferase 1-associated protein 1; DNA 81.55
2xb0_X270 Chromo domain-containing protein 1; hydrolase, DNA 81.06
3s6w_A54 Tudor domain-containing protein 3; methylated argi 80.43
3mp6_A522 MBP, SGF29, maltose-binding periplasmic protein, l 80.22
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
Probab=99.17  E-value=3e-11  Score=108.12  Aligned_cols=57  Identities=26%  Similarity=0.464  Sum_probs=51.3

Q ss_pred             cccccccccccccCCCCCCHHHHHHHHHHHHHcCCChHHHHHHHhcchHHHHHHHHh
Q 001272           30 DRSGKRKRKLSDMLGPQWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFT   86 (1110)
Q Consensus        30 ~k~k~rk~klsd~lg~rWs~eEh~rFlea~r~yGk~WkkVa~~V~tRT~~qVrsly~   86 (1110)
                      .-+|.+|++......+.||.||+++|++|+.+||.+|.+||.+|++||..||+.+|.
T Consensus         4 g~~~~~~~~~~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~   60 (79)
T 2yus_A            4 GSSGTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFL   60 (79)
T ss_dssp             SSSCCCCCCCSSCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHT
T ss_pred             cccCccCCccccccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHH
Confidence            344566777888899999999999999999999999999999999999999999864
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Back     alignment and structure
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens} Back     alignment and structure
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens} Back     alignment and structure
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens} Back     alignment and structure
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens} Back     alignment and structure
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A* Back     alignment and structure
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A* Back     alignment and structure
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A* Back     alignment and structure
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens} Back     alignment and structure
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A Back     alignment and structure
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus} Back     alignment and structure
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens} Back     alignment and structure
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Back     alignment and structure
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A Back     alignment and structure
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A Back     alignment and structure
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus} Back     alignment and structure
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster} Back     alignment and structure
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1 Back     alignment and structure
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens} Back     alignment and structure
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A* Back     alignment and structure
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A Back     alignment and structure
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A* Back     alignment and structure
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1110
d1xc5a168 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 2e-08
d2iw5b165 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu 4e-08
d2crga157 a.4.1.3 (A:8-64) Metastasis associated protein MTA 2e-06
d1irza_64 a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis th 5e-05
d2cu7a165 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap 8e-05
d2cqqa159 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 8e-05
d2cqra160 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 3e-04
d2cjja163 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti 0.003
d1guua_50 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 0.004
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (119), Expect = 2e-08
 Identities = 12/60 (20%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 35 RKRKLSDMLGPQWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTMNRAYLSL 94
          + R++ +M    WS++E E F E + ++ K++  IA+ +  +T       + + +   + 
Sbjct: 12 KDRQVMNM----WSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKNENY 67
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 57 Back     information, alignment and structure
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 59 Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60 Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63 Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1110
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 99.04
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 98.9
d1irza_64 Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId 98.85
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 98.82
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 98.72
d2crga157 Metastasis associated protein MTA3 {Mouse (Mus mus 98.7
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 98.46
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 98.3
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 98.14
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 98.04
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 97.83
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 97.6
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 97.38
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 97.35
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 96.86
d1wgxa_73 Hypothetical protein C14orf106 (KIAA1903) {Human ( 95.8
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 95.21
d1ofcx152 SANT domain of the nucleosome remodeling ATPase IS 95.19
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 95.13
d2qqra159 Jumonji domain-containing protein 2A {Human (Homo 88.29
d2d9ta160 Tudor domain-containing protein 3, TDRD3 {Mouse (M 84.06
d2diqa197 Tudor and KH domain-containing protein TDRKH {Huma 84.0
d1mhna_59 Survival motor neuron protein 1, smn {Human (Homo 83.92
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=7.9e-11  Score=98.96  Aligned_cols=53  Identities=26%  Similarity=0.508  Sum_probs=48.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCChHHHHHHHhcchHHHHHHHHhhhhhhcccC
Q 001272           43 LGPQWSKEELERFYEAYRKYGKDWKKIAAAVRNRTAEMVEALFTMNRAYLSLP   95 (1110)
Q Consensus        43 lg~rWs~eEh~rFlea~r~yGk~WkkVa~~V~tRT~~qVrsly~~~k~~l~lp   95 (1110)
                      ...+||.||.+.|++++..||++|.+|+.+|++||..||+..|.+.+--++++
T Consensus         4 ~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k~~~~~   56 (65)
T d2iw5b1           4 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNID   56 (65)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTTTTHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHHhhcCHH
Confidence            56799999999999999999999999999999999999999999887666554
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d2qqra1 b.34.9.1 (A:897-955) Jumonji domain-containing protein 2A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure