Citrus Sinensis ID: 001296

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------
MASPSSGRLAITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKFDVTNNGDRFNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGENSVENDEEKSPTSDHEDASLTINSRKRQPVRYSFGEPKVILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPSELLMQNNKRRKQQEDFPRNSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILIVDKIIKISEVTCEMTDADNFINQEKIDGSQNSVAESVQDIVKVGGTNDHSTPAHTDDVVLPYISEIDGMVQEKQMGNVKDLTECGQAQNEMGEHKLECELVQSDNSKKNKELIAYRTRSKQKK
cccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHccHHcccccccccHHHHHccccccHHHHHHHHHHHHHHHccccccccccHHcccccccHHHHHHHHHHHccccccccccccccHHcccccHHHHHHHHHHHHHHHHHHHHHccHHccHHHHHHHHHcHHHHcccccHHHHHHHHHHHHHHHcccccccHHHHHcHHHHHHccccccHHHHHHHHcccccccHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHccccHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
cccccccccccccHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHcccccccHHHcccccEEEEccccccccHHHHcHHHHHHHHHHHHccccccHHHHHHHHccccccccccccccccccccccccHHHHHccccHHccccccEEccccccccccccccccccccccccEEEccccccccccccccEEEEEEEEEEEEEEEEEEcccccccccccccccccEEEEcccEEEccccccccccccccccccccHHHHHcHHHHHHccccccEEEccccccccccHHHHHHHHccccccHcHHHHHHHHHHHccc
maspssgrlaitpssrvlqsplsdESIWKRLKeagldevsiKRRDKAALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAEsaetkvaadsKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRhlnqqtslahadlgsdqkfdvtnngdrfntpsvqktasasppslarFSWIKRFADLVFKhsgensvendeeksptsdhedasltinsrkrqpvrysfgepkvilevpsenevvKRTVDLESENNQNAAQKCKQSVSEDGIHAArkrrvdvdcvdpsellmQNNKRRkqqedfprnsseeainhgavaeqsnlpedqhtltsknksnvpeglhtltsnnhtqggneeaSILIVDKIIKISevtcemtdadnfinqekidgsqnsvAESVQDIVKvggtndhstpahtddvvlpYISEIDGMVQEKQMGNVKDLTECGQAQNEMGEHKLECELVQSDNSKKNKELIAYRTRSKQKK
maspssgrlaitpssrvlqsplsdesIWKRLkeagldevsikrrDKAALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRaesaetkvaadsKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYhrsaerklqevvareddlsrriasfkadceekeREIIrerqslsdrkKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKfkalneeksnldltLVSLLKREEAVIEREASLQKKEQKLLVSQetlaskesnEIQKIIANHesalrvkqsEFEAELAIKYKLAEDEIEkkrrawelrdldlGQREesllerehdlevqsralvdkekDLVErshlleekenkliafekEADLKKSLLQKEKEEVNIIKsdlqkslssldekKKQVNCAKDKLEamkseagelsvleiklkeeldVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRkeaervavervvvskslkderdslrqerdamrdqhkrdvdslNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMRefqqisslkekaeKELEQVTleikrldlermeinmdrqrrdREWAELNNSIEELMVQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKFDVTNNGDRfntpsvqktasasppslaRFSWIKRFADLVFKHSGEnsvendeeksptsdhedasltinsrkrqpvrysfgepkvilevpseneVVKRTVDLesennqnaaqkckqsvsedgihaarkrrvdvdcvdpsellmqnnkrrkqqedfprnSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTsnnhtqggneEASILIVDKIIKISEVTCEMTDADNFINQEKIDGSQNSVAESVQDIVKVGgtndhstpahtddvVLPYISEIDGMVQEKQMGNVKDLTECGQAQNEMGEHKLECelvqsdnskknkeliayrtrskqkk
MASPSSGRLAITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCeekereiirerQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADlkksllqkekeeVNIIksdlqkslssldekkkqVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDekreelrkeaervavervvvskslKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIekrreelessfrerekafeeekmrefQQISSlkekaekeleQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKFDVTNNGDRFNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGENSVENDEEKSPTSDHEDASLTINSRKRQPVRYSFGEPKVILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPSELLMQNNKRRKQQEDFPRNSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILIVDKIIKISEVTCEMTDADNFINQEKIDGSQNSVAESVQDIVKVGGTNDHSTPAHTDDVVLPYISEIDGMVQEKQMGNVKDLTECGQAQNEMGEHKLECELVQSDNSKKNKELIAYRTRSKQKK
**************************IWKRLKEAGLDEVSIKRRDKAALIAYIAKLETEIFEHQHHMGLLILEKKELA**********************************************ECIASL*******************************************************************************************************************************************************************LTLVSLL****************************************************FEAELAIKYKLAEDEI*****AWEL**********************************************************************************************************SVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWE*****************************************************************EHSEWFTKIQQERADFLLGIEMQK**************************************************************************************************************DLKIAVDYMA****************************************************************ARFSWIKRFADLVFK************************************************************************************************************************************************************************SILIVDKIIKISEVTCEMTDADNFIN*****************IV*************TDDVVLPYISEIDGMV*****************************************************
**************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
*********AITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLK*******************DVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEM********************QTSLAHADLGSDQKFDVTNNGDRFNTP***********SLARFSWIKRFADLVFKHSG********************LTINSRKRQPVRYSFGEPKVILEVPSENEVVKRTVDLESE******************HAARKRRVDVDCVDPSELLMQNN*************SEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILIVDKIIKISEVTCEMTDADNFINQEKIDGSQNSVAESVQDIVKVGGTNDHSTPAHTDDVVLPYISEIDGMVQEKQMGNVKDLTECGQAQNEMGEHKLECELVQSDNSKKNKELIAYRTRSKQKK
*******************SPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLA*************************************FSWIKRFADLVFKH*****************HEDASLTINSRKRQPVRYSFGEPKVILEVPSEN****R*VD*ESENNQNAA******VS*D**************************************************************************T******T***NEEASILIVDKIIKISEVTCEMTDADNFINQEKIDGSQNSVAESVQDIVKVGGTNDHSTPAHTDDVVLPYISEIDGMVQEKQMGNVKDLTEC**********************K*NK*****R*******
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MASPSSGRLAITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETEIFEHQHHMGLLILExxxxxxxxxxxxxxxxxxxxxQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQTLLNEREDHILSKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFxxxxxxxxxxxxxxxxxxxxxWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLxxxxxxxxxxxxxxxxxxxxxLQKEKEEVNIIKSDLQKSxxxxxxxxxxxxxxxxxxxxxxxxAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLExxxxxxxxxxxxxxxxxxxxxAERVAVERVVVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKFDVTNNGDRFNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGENSVENDEEKSPTSDHEDASLTINSRKRQPVRYSFGEPKVILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPSELLMQNNKRRKQQEDFPRNSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILIVDKIIKISEVTCEMTDADNFINQEKIDGSQNSVAESVQDIVKVGGTNDHSTPAHTDDVVLPYISEIDGMVQEKQMGNVKDLTECGQAQNEMGEHKLECELVQSDNSKKNKELIAYRTRSKQKK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1106 2.2.26 [Sep-21-2011]
Q9FLH01042 Putative nuclear matrix c yes no 0.845 0.897 0.507 0.0
>sp|Q9FLH0|NMCP_ARATH Putative nuclear matrix constituent protein 1-like protein OS=Arabidopsis thaliana GN=At5g65770 PE=2 SV=1 Back     alignment and function desciption
 Score =  901 bits (2329), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 530/1045 (50%), Positives = 725/1045 (69%), Gaps = 110/1045 (10%)

Query: 2    ASPSSGRLAITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETEIF 61
            ++ ++ RL ITP+SRVL+SPL++E +WKRLK+AG DE SIK RDKAALIAYIAKLE+E++
Sbjct: 15   STAATNRLTITPNSRVLKSPLTEEIMWKRLKDAGFDEQSIKNRDKAALIAYIAKLESEVY 74

Query: 62   EHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLG 121
            ++QH+MGLL+LEK EL+S+YE+IKAS + ++L    ++++++SA+AEA+KREESLKK +G
Sbjct: 75   DYQHNMGLLLLEKNELSSQYEEIKASVDESDLTHMREKSAYVSALAEAKKREESLKKDVG 134

Query: 122  VEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQA 181
            + KECI+SLEK +HE+RAE AETKV+A S  +EA  M+E+A KK A+AEAK+ AAE+LQA
Sbjct: 135  IAKECISSLEKTLHEMRAECAETKVSAGSTMSEAHVMIEDALKKLADAEAKMRAAEALQA 194

Query: 182  EANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHE 241
            EANRYHR AERKL+EV +REDDL+RR+ASFK++CE KE E++ ERQ+L++R+K LQQEHE
Sbjct: 195  EANRYHRIAERKLKEVESREDDLTRRLASFKSECETKENEMVIERQTLNERRKSLQQEHE 254

Query: 242  RLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLK 301
            RLLDAQ  LN+REDHI ++ QEL+  EK L+ ++   EE+ KA  ++KSNL++ L    K
Sbjct: 255  RLLDAQVSLNQREDHIFARSQELAELEKGLDTAKTTFEEERKAFEDKKSNLEIALALCAK 314

Query: 302  REE---------------------------AVIEREASLQKKEQKLLVSQETLASKESNE 334
            REE                           AV ERE+SL KKEQ+LLV++E +ASKES  
Sbjct: 315  REEVCFYSHNSLLFLVLHYRSSKKFLGDKIAVSERESSLLKKEQELLVAEEKIASKESEL 374

Query: 335  IQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREH 394
            IQ ++AN E  LR ++S+ EAEL  K K  E EIE KRRAWELR++D+ QRE+ + E+EH
Sbjct: 375  IQNVLANQEVILRKRKSDVEAELECKSKSVEVEIESKRRAWELREVDIKQREDLVGEKEH 434

Query: 395  DLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQK 454
            DLEVQSRAL +KEKD+ E+S  L+EKE  L+A E++ + K ++L+ EKE +  +  +LQ+
Sbjct: 435  DLEVQSRALAEKEKDITEKSFNLDEKEKNLVATEEDINRKTTMLEDEKERLRKLDLELQQ 494

Query: 455  SLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLE 514
            SL+SL++K+K+V+ A  KLEA+KSE  ELS LE+KLKEELD +RAQKLE++ E D+L++E
Sbjct: 495  SLTSLEDKRKRVDSATQKLEALKSETSELSTLEMKLKEELDDLRAQKLEMLAEADRLKVE 554

Query: 515  KAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDS 574
            KAKFEAEWE ID KREELRKEAE +  +R   S  LKDERD++++ERDA+R+QHK DV+S
Sbjct: 555  KAKFEAEWEHIDVKREELRKEAEYITRQREAFSMYLKDERDNIKEERDALRNQHKNDVES 614

Query: 575  LNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFRERE 634
            LNREREEFMNKMV EHSEW +KIQ+ERADFLLGIEMQKR+LE CIE +REELE+S R+RE
Sbjct: 615  LNREREEFMNKMVEEHSEWLSKIQRERADFLLGIEMQKRELEYCIENKREELENSSRDRE 674

Query: 635  KAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSI 694
            KAFE+EK  E ++I SLKE AEKELE V +E+KRLD ER+EI +DR+RR+REWAEL +S+
Sbjct: 675  KAFEQEKKLEEERIQSLKEMAEKELEHVQVELKRLDAERLEIKLDRERREREWAELKDSV 734

Query: 695  EELMVQRQ-------LLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKK 747
            EEL VQR+       +L A+R+EI+ E E LKKLE+LK+A+D M++++MQ S LE S +K
Sbjct: 735  EELKVQREKLETQRHMLRAERDEIRHEIEELKKLENLKVALDDMSMAKMQLSNLERSWEK 794

Query: 748  ISAKRHLNQQTSLAHADLGSDQKFD-------VTNNGDRFNTPSVQKTASASPPSLARFS 800
            +SA   L Q+       +  D + D       V+N+ D +N+ S+++    +P S   FS
Sbjct: 795  VSA---LKQKV------VSRDDELDLQNGVSTVSNSEDGYNS-SMERQNGLTPSSATPFS 844

Query: 801  WIKRFADLVFKHSGENSVENDEEKSPTSDHEDASLTINSRKRQPVRYSFGEPKVILEVPS 860
            WIKR  +L+FK S E S                           + + + E      VPS
Sbjct: 845  WIKRCTNLIFKTSPEKST--------------------------LMHHYEEEGG---VPS 875

Query: 861  ENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPSELLMQNNKRRKQ 920
            E       + LES   +  A     S++ + + A RKRR +    + SE    NNK+RK 
Sbjct: 876  EK------LKLESSRREEKAYTEGLSIAVERLEAGRKRRGNTSGDETSE--PSNNKKRKH 927

Query: 921  QEDFPRNSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEAS 980
              D  +  S+EA     ++   N+PED+H L S +++  P G+                 
Sbjct: 928  --DVTQKYSDEADTQSVISSPQNVPEDKHELPS-SQTQTPSGM----------------- 967

Query: 981  ILIVDKIIKISEVTCEMTDADNFIN 1005
             +++ + +KI+ VTCE T+  N + 
Sbjct: 968  -VVISETVKITRVTCE-TEVTNKVT 990


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.309    0.125    0.324 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 368,006,664
Number of Sequences: 539616
Number of extensions: 15683869
Number of successful extensions: 135439
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 5320
Number of HSP's that attempted gapping in prelim test: 79285
Number of HSP's gapped (non-prelim): 26798
length of query: 1106
length of database: 191,569,459
effective HSP length: 128
effective length of query: 978
effective length of database: 122,498,611
effective search space: 119803641558
effective search space used: 119803641558
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 67 (30.4 bits)

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1106
3594970421117 PREDICTED: putative nuclear matrix const 0.972 0.963 0.569 0.0
2555795071052 Filamin-A-interacting protein, putative 0.932 0.980 0.567 0.0
4494513331025 PREDICTED: putative nuclear matrix const 0.866 0.934 0.550 0.0
3565119841048 PREDICTED: putative nuclear matrix const 0.918 0.969 0.531 0.0
3565634801050 PREDICTED: putative nuclear matrix const 0.920 0.969 0.521 0.0
2402564861010 branched-chain-amino-acid aminotransfera 0.845 0.925 0.520 0.0
2384816501042 protein little nuclei4 [Arabidopsis thal 0.845 0.897 0.507 0.0
3341886551018 branched-chain-amino-acid aminotransfera 0.838 0.910 0.515 0.0
7486519 1421 hypothetical protein F6H11.110 - Arabido 0.836 0.650 0.509 0.0
284807022925 nuclear matrix constituent protein 2 [Ap 0.726 0.868 0.541 0.0
>gi|359497042|ref|XP_003635406.1| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like [Vitis vinifera] gi|296085718|emb|CBI29518.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1136 bits (2939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 652/1145 (56%), Positives = 821/1145 (71%), Gaps = 69/1145 (6%)

Query: 1    MASPSSGRLAI--TPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLET 58
            MASP   R +I  TP SRVLQSPLSD++IWKRL++AG DE SIKRRDKAALIAYIAKLE 
Sbjct: 1    MASPQPARFSIAATPGSRVLQSPLSDDAIWKRLRDAGFDEESIKRRDKAALIAYIAKLEA 60

Query: 59   EIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKK 118
            EIF+HQHHMGLLILE+KE A+KYEQIK  AE+AE++ K D+++H SA+AEARKRE+SLKK
Sbjct: 61   EIFDHQHHMGLLILERKEWATKYEQIKTEAESAEIVYKRDQSAHSSALAEARKREDSLKK 120

Query: 119  TLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAES 178
             L +EKECIA+LEKA+HE+R E AETKVAA+ K AEA  MVE+AQK+F EAEAKLHAAE+
Sbjct: 121  ALEIEKECIANLEKALHEMRQECAETKVAAEIKLAEAHSMVEDAQKRFVEAEAKLHAAEA 180

Query: 179  LQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQ 238
             QAEA  + R+AERKLQEV AREDDL RR+ SFK+DC+EKE+EII ERQSLS+R+K +QQ
Sbjct: 181  FQAEAICFRRTAERKLQEVEAREDDLRRRLISFKSDCDEKEKEIILERQSLSERQKNVQQ 240

Query: 239  EHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVS 298
              ERL+D Q LLN+RE++I S+ QEL+R EKELEAS++N+E++ +ALNEEKSNL+L L S
Sbjct: 241  GQERLIDGQALLNQREEYIFSRSQELNRLEKELEASKSNIEKELRALNEEKSNLELKLAS 300

Query: 299  LLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELA 358
            L  REE V++REA L KKE ++L+ QE +ASKES+E+QK++A HE AL+ +++EFEAEL 
Sbjct: 301  LTTREEDVVKREALLNKKEHEILILQEKIASKESDEVQKLMALHEIALKTRKAEFEAELE 360

Query: 359  IKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLE 418
             K KL EDEIE KRRA ELR++DL  RE+  LEREH+LEVQSRAL +KEKD+ E+ + L+
Sbjct: 361  TKRKLVEDEIEAKRRASELREVDLSNREDFALEREHELEVQSRALAEKEKDVTEKLNSLD 420

Query: 419  EKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKS 478
            EKE  L A EK+ +L+K  L+KEKEE+N +K +++KSLSSL++KKKQV+ AK+K+EAMKS
Sbjct: 421  EKEKYLNAAEKDVELEKIHLEKEKEEINKMKLNIEKSLSSLEDKKKQVDHAKEKVEAMKS 480

Query: 479  EAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAER 538
            E  EL VLE+KLKEE+DV+RAQKLELM E D+L+ +KA FEAEWE IDEKREELR EAER
Sbjct: 481  ETSELLVLEMKLKEEIDVIRAQKLELMAEADELRAQKANFEAEWESIDEKREELRNEAER 540

Query: 539  VAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQ 598
            +A ER+ +SK LKDERDSL+ E+DAMRDQ+K++V+SL+RERE+FM+KMVHE SEWF+KIQ
Sbjct: 541  IAEERLAISKFLKDERDSLKLEKDAMRDQYKQEVESLSREREDFMSKMVHERSEWFSKIQ 600

Query: 599  QERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKE 658
            QERADFLL IEMQK++LENCI+ RREELES F+EREK FE+EKM+E Q ISS+KE+  KE
Sbjct: 601  QERADFLLDIEMQKKELENCIDNRREELESYFKEREKTFEQEKMKELQHISSMKERVAKE 660

Query: 659  LEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQ-------LLHADREEI 711
            LE V  E+KRLD ERMEIN+D +RRDREWAEL+NSIEEL +QRQ       LLHADR+EI
Sbjct: 661  LEHVASEMKRLDAERMEINLDHERRDREWAELSNSIEELKMQRQKLKKQRELLHADRKEI 720

Query: 712  QAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKF 771
              + E LKKLEDLKIA D +A++EMQ+S  E SQ+K+  KR+   Q ++ +AD  S QK 
Sbjct: 721  HTQIEHLKKLEDLKIASDNIALAEMQQSNQEPSQRKVYVKRYYKAQNTIPNADFESHQKI 780

Query: 772  DVTNNGDRFNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGENSVENDEEKSPTSDHE 831
            +V  NG  FN P++    S+SP +   FSW KR A+L+FK S E       EKS  S+ E
Sbjct: 781  NVVKNGSGFNLPAL--PDSSSPSTATPFSWFKRCAELIFKLSPEKPSIKHGEKSSISNSE 838

Query: 832  DASLTINSR----------------------KRQPVRYSFGEPKVILEVPSENEVVKRTV 869
            +A+LT+                          RQP RY+ GEPKVILEVPS  E VK   
Sbjct: 839  NANLTLAGNLDLSDGFDREVHDRNEKTHSISDRQPTRYALGEPKVILEVPSSGEDVKGLH 898

Query: 870  DLESENNQNAAQKCKQSVSEDGIHAARKRRV----DVDCVDPSELLMQNNKRRKQQEDFP 925
             LESE  ++ ++    S SE  + A RKRRV      D VD +    Q NK+R+QQE   
Sbjct: 899  TLESEIKKDTSENSSHSFSEKELLAGRKRRVVNSSSNDWVDTTLEQRQKNKKRRQQES-- 956

Query: 926  RNSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILIVD 985
                  A +   V+ Q               S+  EG     S N TQGG EE ++LI D
Sbjct: 957  ------AADPCGVSIQ---------------SDAREGQDVSISLNQTQGGAEETNLLITD 995

Query: 986  KIIKISEVTCEMTDADNFINQEKIDGSQNSVAESVQDIVKVGGTNDHSTPAHTDDVVLPY 1045
            +IIKISEVTCE      F NQ K +  QNSV E  QDI + GGTN  +     + V+   
Sbjct: 996  EIIKISEVTCENV---VFDNQAKPNALQNSVVELGQDI-QHGGTNGLADSNAENCVLSSD 1051

Query: 1046 ISEIDGMVQEKQMGNVKDLTECGQAQNEMGEHKLECEL-----VQSDNSKKNKELIAYRT 1100
                + + +E    +V  + E  Q Q+E    K + EL      +SD+ KK  E +  R 
Sbjct: 1052 FKAQEKIGKEVLFVDVGQVIEHSQPQDESISEKSQQELQEQGVPKSDDDKKLSEKVGRRM 1111

Query: 1101 RSKQK 1105
            RS+QK
Sbjct: 1112 RSRQK 1116

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255579507|ref|XP_002530596.1| Filamin-A-interacting protein, putative [Ricinus communis] gi|223529844|gb|EEF31776.1| Filamin-A-interacting protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449451333|ref|XP_004143416.1| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356511984|ref|XP_003524701.1| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like [Glycine max] Back     alignment and taxonomy information
>gi|356563480|ref|XP_003549990.1| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like [Glycine max] Back     alignment and taxonomy information
>gi|240256486|ref|NP_201378.5| branched-chain-amino-acid aminotransferase 5 [Arabidopsis thaliana] gi|334188653|ref|NP_001190626.1| branched-chain-amino-acid aminotransferase 5 [Arabidopsis thaliana] gi|332010720|gb|AED98103.1| branched-chain-amino-acid aminotransferase 5 [Arabidopsis thaliana] gi|332010722|gb|AED98105.1| branched-chain-amino-acid aminotransferase 5 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|238481650|ref|NP_001154799.1| protein little nuclei4 [Arabidopsis thaliana] gi|26397174|sp|Q9FLH0.1|NMCP_ARATH RecName: Full=Putative nuclear matrix constituent protein 1-like protein; Short=NMCP1-like gi|10177335|dbj|BAB10684.1| nuclear matrix constituent protein 1 (NMCP1)-like [Arabidopsis thaliana] gi|332010721|gb|AED98104.1| protein little nuclei4 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|334188655|ref|NP_001190627.1| branched-chain-amino-acid aminotransferase 5 [Arabidopsis thaliana] gi|332010724|gb|AED98107.1| branched-chain-amino-acid aminotransferase 5 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|7486519|pir||T05892 hypothetical protein F6H11.110 - Arabidopsis thaliana gi|2827709|emb|CAA16682.1| predicted protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|284807022|dbj|BAI67716.1| nuclear matrix constituent protein 2 [Apium graveolens] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1106
TAIR|locus:21699501042 LINC4 "LITTLE NUCLEI4" [Arabid 0.687 0.729 0.383 5.8e-121
TAIR|locus:20195291132 LINC1 "AT1G67230" [Arabidopsis 0.613 0.598 0.276 2.9e-81
TAIR|locus:20318751128 LINC2 "LITTLE NUCLEI2" [Arabid 0.632 0.619 0.271 1.7e-70
TAIR|locus:20124231085 LINC3 "LITTLE NUCLEI3" [Arabid 0.518 0.528 0.284 1.8e-58
ZFIN|ZDB-GENE-050208-3171422 tnks1bp1 "tankyrase 1 binding 0.320 0.248 0.238 1.7e-19
ZFIN|ZDB-GENE-060503-5061041 si:ch211-250g4.3 "si:ch211-250 0.488 0.518 0.206 6.1e-15
ZFIN|ZDB-GENE-030131-58701964 myh9a "myosin, heavy polypepti 0.704 0.396 0.201 8.4e-15
UNIPROTKB|G1K3071972 MYH11 "Myosin-11" [Gallus gall 0.491 0.275 0.219 1.4e-14
UNIPROTKB|E1BXA51979 MYH11 "Myosin-11" [Gallus gall 0.491 0.274 0.219 1.4e-14
UNIPROTKB|P105871979 MYH11 "Myosin-11" [Gallus gall 0.491 0.274 0.219 1.4e-14
TAIR|locus:2169950 LINC4 "LITTLE NUCLEI4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1190 (424.0 bits), Expect = 5.8e-121, P = 5.8e-121
 Identities = 304/793 (38%), Positives = 426/793 (53%)

Query:    79 SKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIR 138
             S Y    A A+  E   K D       I+   K    ++      K    S     H + 
Sbjct:   113 SAYVSALAEAKKREESLKKDVGIAKECISSLEKTLHEMRAECAETKVSAGSTMSEAH-VM 171

Query:   139 AESAETKVA-ADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANR----YHRSAERK 193
              E A  K+A A++K   A  +   A +    AE KL   ES + +  R    +    E K
Sbjct:   172 IEDALKKLADAEAKMRAAEALQAEANRYHRIAERKLKEVESREDDLTRRLASFKSECETK 231

Query:   194 LQEVVAREDDLSRRIASFKADCXXXXXXXXXXXQSLSDRKKILQQEHERLLDAQTLLNER 253
               E+V     L+ R  S + +             SL+ R+  +    + L + +  L+  
Sbjct:   232 ENEMVIERQTLNERRKSLQQE----HERLLDAQVSLNQREDHIFARSQELAELEKGLDTA 287

Query:   254 EDHILSKLQELSRKEKELEASRANVEEKFKA-LNEEKSNLDLTL-----VSLLKREEAVI 307
             +     + +    K+  LE + A   ++ +       S L L L        L  + AV 
Sbjct:   288 KTTFEEERKAFEDKKSNLEIALALCAKREEVCFYSHNSLLFLVLHYRSSKKFLGDKIAVS 347

Query:   308 EREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDE 367
             ERE+SL KKEQ+LLV++E +ASKES  IQ ++AN E  LR ++S+ EAEL  K K  E E
Sbjct:   348 ERESSLLKKEQELLVAEEKIASKESELIQNVLANQEVILRKRKSDVEAELECKSKSVEVE 407

Query:   368 IEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAF 427
             IE KRRAWELR++D+ QRE+ + E+EHDLEVQSRAL +KEKD+ E+S  L+EKE  L+A 
Sbjct:   408 IESKRRAWELREVDIKQREDLVGEKEHDLEVQSRALAEKEKDITEKSFNLDEKEKNLVAT 467

Query:   428 EKEADXXXXXXXXXXXXVNIIXXXXXXXXXXXXXXXXXVNCAKDKLEAMKSEAGELSVLE 487
             E++ +            +  +                 V+ A  KLEA+KSE  ELS LE
Sbjct:   468 EEDINRKTTMLEDEKERLRKLDLELQQSLTSLEDKRKRVDSATQKLEALKSETSELSTLE 527

Query:   488 IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDXXXXXXXXXXXXXXXXXXXXX 547
             +KLKEELD +RAQKLE++ E D+L++EKAKFEAEWE ID                     
Sbjct:   528 MKLKEELDDLRAQKLEMLAEADRLKVEKAKFEAEWEHIDVKREELRKEAEYITRQREAFS 587

Query:   548 XXXKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLG 607
                KDERD++++ERDA+R+QHK DV+SLNREREEFMNKMV EHSEW +KIQ+ERADFLLG
Sbjct:   588 MYLKDERDNIKEERDALRNQHKNDVESLNREREEFMNKMVEEHSEWLSKIQRERADFLLG 647

Query:   608 IEMQKRDLENCIXXXXXXXXXXXXXXXXXXXXXXXXXXQQISSXXXXXXXXXXQVTLEIK 667
             IEMQKR+LE CI                          ++I S           V +E+K
Sbjct:   648 IEMQKRELEYCIENKREELENSSRDREKAFEQEKKLEEERIQSLKEMAEKELEHVQVELK 707

Query:   668 RLDLERMEINMDRQRRDREWAELNNSIEELMVQRQ-------LLHADREEIQAESERLKK 720
             RLD ER+EI +DR+RR+REWAEL +S+EEL VQR+       +L A+R+EI+ E E LKK
Sbjct:   708 RLDAERLEIKLDRERREREWAELKDSVEELKVQREKLETQRHMLRAERDEIRHEIEELKK 767

Query:   721 LEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKFD-VTNNGDR 779
             LE+LK+A+D M++++MQ S LE S +K+SA   L Q+      +L        V+N+ D 
Sbjct:   768 LENLKVALDDMSMAKMQLSNLERSWEKVSA---LKQKVVSRDDELDLQNGVSTVSNSEDG 824

Query:   780 FNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGENS--VENDEEKSPTSDHEDASLTI 837
             +N+ S+++    +P S   FSWIKR  +L+FK S E S  + + EE+      +   L +
Sbjct:   825 YNS-SMERQNGLTPSSATPFSWIKRCTNLIFKTSPEKSTLMHHYEEEGGVPSEK---LKL 880

Query:   838 NSRKRQPVRYSFG 850
              S +R+   Y+ G
Sbjct:   881 ESSRREEKAYTEG 893
GO:0005634 "nucleus" evidence=ISM
GO:0009507 "chloroplast" evidence=IDA
GO:0005652 "nuclear lamina" evidence=IDA
GO:0006997 "nucleus organization" evidence=IMP
GO:0034399 "nuclear periphery" evidence=IDA
TAIR|locus:2019529 LINC1 "AT1G67230" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031875 LINC2 "LITTLE NUCLEI2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2012423 LINC3 "LITTLE NUCLEI3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050208-317 tnks1bp1 "tankyrase 1 binding protein 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060503-506 si:ch211-250g4.3 "si:ch211-250g4.3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5870 myh9a "myosin, heavy polypeptide 9a, non-muscle" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|G1K307 MYH11 "Myosin-11" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1BXA5 MYH11 "Myosin-11" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P10587 MYH11 "Myosin-11" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FLH0NMCP_ARATHNo assigned EC number0.50710.84530.8973yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1106
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-13
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-11
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 6e-11
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 8e-11
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 3e-10
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 3e-10
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 4e-10
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-09
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 1e-09
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 1e-09
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-09
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-09
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 5e-09
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 5e-09
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 6e-09
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 7e-09
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 7e-09
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-08
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 5e-08
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 7e-08
PRK02224880 PRK02224, PRK02224, chromosome segregation protein 1e-07
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-07
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 3e-07
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 3e-07
PRK12704520 PRK12704, PRK12704, phosphodiesterase; Provisional 4e-07
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 7e-07
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 8e-07
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 1e-06
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 1e-06
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-06
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-06
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-06
PRK02224880 PRK02224, PRK02224, chromosome segregation protein 2e-06
pfam121281198 pfam12128, DUF3584, Protein of unknown function (D 2e-06
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 4e-06
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 8e-06
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 8e-06
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 1e-05
TIGR03319514 TIGR03319, RNase_Y, ribonuclease Y 1e-05
PRK12704520 PRK12704, PRK12704, phosphodiesterase; Provisional 2e-05
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 3e-05
pfam024631162 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 3e-05
PRK02224880 PRK02224, PRK02224, chromosome segregation protein 4e-05
pfam024631162 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 4e-05
pfam024631162 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 5e-05
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 6e-05
TIGR006181042 TIGR00618, sbcc, exonuclease SbcC 6e-05
PRK05771646 PRK05771, PRK05771, V-type ATP synthase subunit I; 7e-05
pfam05557722 pfam05557, MAD, Mitotic checkpoint protein 8e-05
pfam024631162 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 2e-04
COG4942420 COG4942, COG4942, Membrane-bound metallopeptidase 6e-04
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 8e-04
COG1269660 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su 8e-04
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.001
PRK00409782 PRK00409, PRK00409, recombination and DNA strand e 0.001
pfam01496707 pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni 0.002
TIGR026801353 TIGR02680, TIGR02680, TIGR02680 family protein 0.004
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information 
 Score = 74.4 bits (183), Expect = 3e-13
 Identities = 152/718 (21%), Positives = 308/718 (42%), Gaps = 38/718 (5%)

Query: 33  EAGLDEVSIKRRDKAALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAE 92
           E  L+E+  +  +    I  +     E+ E    +   +LE KE   + E   +      
Sbjct: 252 EEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERL 311

Query: 93  LLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKF 152
              +++       + E +++ E+LK+ L   +  +  LE+ + E+     E +    +  
Sbjct: 312 EELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALL 371

Query: 153 AEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFK 212
            E   + E  +++ AE EA+L    +   E  R   S E +L+ +  R +DL   +   +
Sbjct: 372 EELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELE 431

Query: 213 ADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELE 272
           A+ EE + E+    + L + ++ L++  +RL + +  L E ++ +    +ELS  E  L+
Sbjct: 432 AELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLD 491

Query: 273 ASRAN------VEEKFKALNEEKSNLDLTLVSLLK-REEAVIEREASLQKKEQKLLVSQE 325
              A       V    +AL      +   +  L+K +E+     EA+L  + Q ++V  E
Sbjct: 492 RLEAEQRASQGVRAVLEALESGLPGVYGPVAELIKVKEKYETALEAALGNRLQAVVVENE 551

Query: 326 TLASKESNEIQK--------IIANHESALRVKQSEFE---AELAIKYKLAEDEIEKKRRA 374
            +A K    +++        +  +    LR  +S+       LA      + + E   R 
Sbjct: 552 EVAKKAIEFLKENKAGRATFLPLDRIKPLRSLKSDAAPGFLGLASDLIDFDPKYEPAVRF 611

Query: 375 WELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLL----------EEKENKL 424
             L D  +    E        L ++ R +V  + DLVE S  +            ++ +L
Sbjct: 612 V-LGDTLVVDDLEQARRLARKLRIKYR-IVTLDGDLVEPSGSITGGSRNKRSSLAQKREL 669

Query: 425 IAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELS 484
              E+E    ++ L+K +EE+  +K++L+     L+E ++Q+   + +LE +K E   L 
Sbjct: 670 KELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALE 729

Query: 485 VLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERV 544
               +L+  L+ +  +  EL  E ++LQ    + E E E ++E   +L++E E +  +R 
Sbjct: 730 EELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQ 789

Query: 545 VVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEF---MNKMVHEHSEWFTKIQQER 601
            + + L++  + L +    + D  +R+++SL + RE     + ++  E  E   K+ +  
Sbjct: 790 ALQEELEELEEELEEAERRL-DALERELESLEQRRERLEQEIEELEEEIEELEEKLDELE 848

Query: 602 ADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQ 661
            + L  +E +  +L+  +E+   E E    +  K  EEEK    +++  L+ +  +  E+
Sbjct: 849 EE-LEELEKELEELKEELEELEAEKEEL-EDELKELEEEKEELEEELRELESELAELKEE 906

Query: 662 VTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQLLHADREEIQAESERLK 719
           +  E  R  LE +E  ++R   +    E     E        L  + E ++ E E L 
Sbjct: 907 I--EKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALG 962

Length = 1163
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y Back     alignment and domain information
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain Back     alignment and domain information
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC Back     alignment and domain information
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated Back     alignment and domain information
>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein Back     alignment and domain information
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain Back     alignment and domain information
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed Back     alignment and domain information
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family Back     alignment and domain information
>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1106
PRK02224880 chromosome segregation protein; Provisional 99.46
KOG01611930 consensus Myosin class II heavy chain [Cytoskeleto 99.3
PRK02224880 chromosome segregation protein; Provisional 99.08
TIGR006061311 rad50 rad50. This family is based on the phylogeno 99.05
TIGR006061311 rad50 rad50. This family is based on the phylogeno 99.01
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 98.81
COG11961163 Smc Chromosome segregation ATPases [Cell division 98.67
PRK03918880 chromosome segregation protein; Provisional 98.65
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 98.57
PRK03918880 chromosome segregation protein; Provisional 98.43
PRK01156895 chromosome segregation protein; Provisional 98.4
TIGR021691164 SMC_prok_A chromosome segregation protein SMC, pri 98.38
TIGR021691164 SMC_prok_A chromosome segregation protein SMC, pri 98.26
KOG01611930 consensus Myosin class II heavy chain [Cytoskeleto 98.2
PF121281201 DUF3584: Protein of unknown function (DUF3584); In 98.15
PRK01156895 chromosome segregation protein; Provisional 98.15
KOG10291118 consensus Endocytic adaptor protein intersectin [S 97.89
PF10174775 Cast: RIM-binding protein of the cytomatrix active 97.86
COG0419908 SbcC ATPase involved in DNA repair [DNA replicatio 97.84
COG11961163 Smc Chromosome segregation ATPases [Cell division 97.8
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 97.74
KOG46741822 consensus Uncharacterized conserved coiled-coil pr 97.68
PF01576859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 97.48
COG0419908 SbcC ATPase involved in DNA repair [DNA replicatio 97.45
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 97.17
KOG02501074 consensus DNA repair protein RAD18 (SMC family pro 96.91
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 96.75
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 96.73
PF121281201 DUF3584: Protein of unknown function (DUF3584); In 96.47
PF10174775 Cast: RIM-binding protein of the cytomatrix active 96.4
PRK12704520 phosphodiesterase; Provisional 96.35
PRK11637428 AmiB activator; Provisional 96.35
PRK11637428 AmiB activator; Provisional 96.26
KOG0964 1200 consensus Structural maintenance of chromosome pro 96.07
KOG09331174 consensus Structural maintenance of chromosome pro 96.0
TIGR03319514 YmdA_YtgF conserved hypothetical protein YmdA/YtgF 95.96
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 95.79
PRK00106535 hypothetical protein; Provisional 95.72
PF00038312 Filament: Intermediate filament protein; InterPro: 95.62
PF01576859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 95.62
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 95.34
KOG0018 1141 consensus Structural maintenance of chromosome pro 95.12
PRK12704520 phosphodiesterase; Provisional 95.12
PHA02562562 46 endonuclease subunit; Provisional 95.02
TIGR03319514 YmdA_YtgF conserved hypothetical protein YmdA/YtgF 94.89
PRK00106535 hypothetical protein; Provisional 94.85
KOG0977546 consensus Nuclear envelope protein lamin, intermed 94.5
PRK04863 1486 mukB cell division protein MukB; Provisional 94.5
PF12072201 DUF3552: Domain of unknown function (DUF3552); Int 94.39
PF00038312 Filament: Intermediate filament protein; InterPro: 94.04
PHA02562562 46 endonuclease subunit; Provisional 94.04
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 93.8
PF05701522 WEMBL: Weak chloroplast movement under blue light; 92.94
KOG0996 1293 consensus Structural maintenance of chromosome pro 92.55
PF13851201 GAS: Growth-arrest specific micro-tubule binding 92.04
COG1340294 Uncharacterized archaeal coiled-coil protein [Func 90.25
PF12072201 DUF3552: Domain of unknown function (DUF3552); Int 89.99
PRK12705508 hypothetical protein; Provisional 89.92
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 89.56
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 88.38
PF05557722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 87.54
KOG06121317 consensus Rho-associated, coiled-coil containing p 87.45
PF05557722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 87.3
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 85.8
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 85.09
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 84.9
KOG06121317 consensus Rho-associated, coiled-coil containing p 84.71
KOG02501074 consensus DNA repair protein RAD18 (SMC family pro 82.43
PRK09039343 hypothetical protein; Validated 82.27
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 80.9
KOG09641200 consensus Structural maintenance of chromosome pro 80.61
TIGR01005754 eps_transp_fam exopolysaccharide transport protein 80.2
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 80.11
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information 
Probab=99.46  E-value=6e-07  Score=108.08  Aligned_cols=148  Identities=16%  Similarity=0.215  Sum_probs=61.8

Q ss_pred             HHHHhHHHHHHHHHhhhhhhh---hhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhh
Q 001296          125 ECIASLEKAVHEIRAESAETK---VAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVARE  201 (1106)
Q Consensus       125 qCVadLEKAL~emr~E~AeiK---~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL~eVEaRE  201 (1106)
                      +.+..++..+..+...+.+..   -....++.+.+.-+..++.+...+...+..+....+..+-+...+..++.+++...
T Consensus       251 ~~l~~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~~~~~~~l~~~~~~l~~k~~el~~~l  330 (880)
T PRK02224        251 EELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRL  330 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444454444444444321   12233333333334444433333333333333333444444444555555555555


Q ss_pred             hHHHHHHhHhhhhhhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHH
Q 001296          202 DDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVE  279 (1106)
Q Consensus       202 ~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie  279 (1106)
                      +.++.....+..+.+.+...+       ...++.+.+.++.+.....-+..-+..+......+..++.++++.+..++
T Consensus       331 ~~~~~~l~~~~~~~e~~~~~~-------~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~  401 (880)
T PRK02224        331 EECRVAAQAHNEEAESLREDA-------DDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFG  401 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            444444444433333333333       33333333333333333333444444444444445555555555444444

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>PRK12704 phosphodiesterase; Provisional Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PRK00106 hypothetical protein; Provisional Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK12704 phosphodiesterase; Provisional Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF Back     alignment and domain information
>PRK00106 hypothetical protein; Provisional Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] Back     alignment and domain information
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PRK12705 hypothetical protein; Provisional Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1106
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-19
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-08
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-16
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 5e-15
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-13
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-13
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-12
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-10
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-05
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 1e-13
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 7e-11
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 6e-09
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 3e-07
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 6e-05
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 2e-07
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 6e-05
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 2e-06
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 4e-05
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 8e-05
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 8e-05
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 2e-04
1sjj_A863 Actinin; 3-helix bundle, calponin homology domain, 4e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 94.5 bits (234), Expect = 1e-19
 Identities = 104/651 (15%), Positives = 211/651 (32%), Gaps = 185/651 (28%)

Query: 184 NRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDR--KKILQQEHE 241
           + +H   E    +   + D LS    +F  + + K+ + +  +  LS      I+  +  
Sbjct: 3   HHHHMDFETGEHQYQYK-DILSVFEDAFVDNFDCKDVQDM-PKSILSKEEIDHIIMSKDA 60

Query: 242 -----RLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALN-----EEKSN 291
                RL    TLL+++E+ +   ++E+ R   +   S    E++  ++      E++  
Sbjct: 61  VSGTLRLFW--TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118

Query: 292 LDLTLVSLLK----REEAVIEREASLQ--KKEQKLLV------SQETLASK--ESNEIQK 337
           L        K    R +  ++   +L   +  + +L+       +  +A     S ++Q 
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178

Query: 338 IIANH------------ESALRVKQ-----------SEFEAELAIKYKLAEDEIEKKRRA 374
            +               E+ L + Q           S  +    IK ++      + RR 
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI-HSIQAELRRL 237

Query: 375 WELRDLDLGQREESLL------EREH--DLEVQSRALV---DK------------EKDLV 411
            + +       E  LL        +      +  + L+    K               L 
Sbjct: 238 LKSKPY-----ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292

Query: 412 ERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVN-----IIKSDLQKSLSSLDEKKKQV 466
             S  L   E K +   K  D +   L +E    N     II   ++  L++ D  K  V
Sbjct: 293 HHSMTLTPDEVKSL-LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK-HV 350

Query: 467 NCAKDKL-EAMKSEAGELSVLEIK-LKEEL-----DV-VRAQKLELMVETDKLQLEKAKF 518
           NC  DKL   ++S    L   E + + + L        +    L L+             
Sbjct: 351 NC--DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI------------- 395

Query: 519 EAEW-EMIDEKREELRKEAERVAVERVVVSKSL--KDERDS----------LRQERDAMR 565
              W ++I         +   V  +  +   SL  K  ++S          L+ + +   
Sbjct: 396 ---WFDVIKS-------DVMVVVNK--LHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443

Query: 566 DQHKRDVDSLNREREEFMNKMVHEHSE--WFTKIQQERADFLLGIEMQKRDLENCIEKRR 623
             H+  VD  N  +    + ++  + +  +++ I       L  IE  +R          
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI----GHHLKNIEHPERMTL------F 493

Query: 624 EELESSFREREKAFEEEKMRE--------------FQQISSLKE---KAEKELEQVTLEI 666
             +   FR     F E+K+R                QQ+   K      + + E++   I
Sbjct: 494 RMVFLDFR-----FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI 548

Query: 667 KRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQLLHADREEIQAESER 717
               L ++E N+   +               +++  L+  + E I  E+ +
Sbjct: 549 LDF-LPKIEENLICSKYTD------------LLRIALMA-EDEAIFEEAHK 585
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1106
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 97.76
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 97.71
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 95.6
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 94.85
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 94.31
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 93.33
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 92.23
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 91.18
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 88.48
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 87.92
2efr_A155 General control protein GCN4 and tropomyosin 1 Al; 84.35
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
Probab=97.76  E-value=5.2e-05  Score=93.57  Aligned_cols=33  Identities=15%  Similarity=0.259  Sum_probs=0.0

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhh
Q 001296          556 SLRQERDAMRDQHKRDVDSLNREREEFMNKMVHE  589 (1106)
Q Consensus       556 rLK~EK~~~r~~~krelEsL~~ekEsF~~kMehE  589 (1106)
                      .|..+...++..+. ++...+...-+...+|+.|
T Consensus      1148 ~L~~ele~L~~~Ie-el~~vn~aq~el~~~~e~~ 1180 (1184)
T 1i84_S         1148 DLSEELEALKTELE-DTLDTTATQQELRGSDYKD 1180 (1184)
T ss_dssp             ----------------------------------
T ss_pred             HHHHHHHHHHHHHH-HHhhHHHHHHHHHhhhccc
Confidence            34444444444433 2333344444444444433
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00